Query 023787
Match_columns 277
No_of_seqs 414 out of 2166
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 06:39:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023787.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023787hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05891 Methyltransf_PK: AdoM 100.0 4.2E-29 9.2E-34 205.4 6.8 167 102-276 2-168 (218)
2 COG2226 UbiE Methylase involve 99.9 5.3E-24 1.1E-28 179.7 12.2 139 125-274 22-161 (238)
3 PF01209 Ubie_methyltran: ubiE 99.9 1.1E-23 2.3E-28 179.3 8.5 146 118-274 11-158 (233)
4 PLN02396 hexaprenyldihydroxybe 99.9 6.6E-21 1.4E-25 169.0 14.1 154 104-270 83-236 (322)
5 PLN02233 ubiquinone biosynthes 99.9 6.1E-21 1.3E-25 165.5 12.8 115 155-274 71-187 (261)
6 PF08241 Methyltransf_11: Meth 99.8 2.4E-20 5.2E-25 136.1 11.1 95 162-267 1-95 (95)
7 PLN02244 tocopherol O-methyltr 99.8 1.7E-19 3.7E-24 162.2 15.0 109 156-271 117-225 (340)
8 KOG1540 Ubiquinone biosynthesi 99.8 5.8E-20 1.3E-24 153.0 10.8 139 127-273 73-218 (296)
9 PTZ00098 phosphoethanolamine N 99.8 6.1E-19 1.3E-23 153.2 14.6 110 155-272 50-159 (263)
10 PF12847 Methyltransf_18: Meth 99.8 3.7E-19 8E-24 134.4 10.8 108 157-270 1-112 (112)
11 COG2227 UbiG 2-polyprenyl-3-me 99.8 1.6E-19 3.4E-24 150.3 9.3 105 157-271 59-163 (243)
12 PRK11207 tellurite resistance 99.8 6.7E-19 1.4E-23 146.6 13.1 105 157-269 30-134 (197)
13 KOG1270 Methyltransferases [Co 99.8 2.8E-19 6.1E-24 149.8 9.6 108 158-271 90-197 (282)
14 TIGR02752 MenG_heptapren 2-hep 99.8 7.9E-19 1.7E-23 149.6 12.0 111 155-273 43-155 (231)
15 PRK15451 tRNA cmo(5)U34 methyl 99.8 1.6E-18 3.6E-23 149.2 13.9 110 157-273 56-168 (247)
16 PF02353 CMAS: Mycolic acid cy 99.8 1.1E-18 2.5E-23 151.6 12.5 126 135-271 43-168 (273)
17 COG2230 Cfa Cyclopropane fatty 99.8 2.1E-18 4.4E-23 148.4 13.6 112 155-274 70-181 (283)
18 PF13847 Methyltransf_31: Meth 99.8 2E-18 4.3E-23 137.9 11.1 106 157-271 3-112 (152)
19 TIGR00740 methyltransferase, p 99.8 4.3E-18 9.3E-23 146.0 13.0 111 156-273 52-165 (239)
20 TIGR00477 tehB tellurite resis 99.8 6.4E-18 1.4E-22 140.5 12.7 105 157-270 30-134 (195)
21 PF13649 Methyltransf_25: Meth 99.8 1.5E-18 3.4E-23 128.9 6.8 96 161-263 1-101 (101)
22 PRK10258 biotin biosynthesis p 99.7 2.4E-17 5.2E-22 142.3 14.3 102 156-271 41-142 (251)
23 PRK14103 trans-aconitate 2-met 99.7 8.3E-18 1.8E-22 145.6 11.1 99 155-269 27-126 (255)
24 PRK05785 hypothetical protein; 99.7 3.8E-18 8.3E-23 144.9 8.2 90 157-262 51-140 (226)
25 PRK11036 putative S-adenosyl-L 99.7 7.2E-18 1.6E-22 145.9 9.8 105 157-269 44-149 (255)
26 TIGR03587 Pse_Me-ase pseudamin 99.7 7.1E-17 1.5E-21 134.9 14.5 104 156-273 42-146 (204)
27 PRK12335 tellurite resistance 99.7 4.1E-17 9E-22 143.5 12.0 104 157-269 120-223 (287)
28 PRK15068 tRNA mo(5)U34 methylt 99.7 6.1E-17 1.3E-21 144.3 13.2 107 156-270 121-227 (322)
29 PF03848 TehB: Tellurite resis 99.7 4.4E-17 9.6E-22 133.5 10.9 106 156-270 29-134 (192)
30 TIGR03840 TMPT_Se_Te thiopurin 99.7 1.2E-16 2.6E-21 134.3 13.4 126 138-268 19-151 (213)
31 PRK11873 arsM arsenite S-adeno 99.7 7.6E-17 1.6E-21 140.8 12.7 110 155-272 75-186 (272)
32 PRK01683 trans-aconitate 2-met 99.7 9.3E-17 2E-21 139.2 13.0 100 155-268 29-129 (258)
33 PLN02336 phosphoethanolamine N 99.7 1E-16 2.2E-21 150.6 14.2 109 155-272 264-372 (475)
34 smart00828 PKS_MT Methyltransf 99.7 8.5E-17 1.8E-21 136.5 12.2 104 160-271 2-106 (224)
35 TIGR00452 methyltransferase, p 99.7 1.8E-16 3.9E-21 140.1 12.7 105 155-270 119-226 (314)
36 TIGR02072 BioC biotin biosynth 99.7 3.4E-16 7.3E-21 133.5 13.5 102 157-270 34-136 (240)
37 PF08242 Methyltransf_12: Meth 99.7 3E-18 6.4E-23 126.8 0.5 95 162-265 1-99 (99)
38 smart00138 MeTrc Methyltransfe 99.7 1.9E-16 4.1E-21 137.5 11.8 113 156-268 98-241 (264)
39 KOG4300 Predicted methyltransf 99.7 6.5E-17 1.4E-21 130.9 8.1 111 155-273 74-186 (252)
40 PLN02490 MPBQ/MSBQ methyltrans 99.7 2.1E-16 4.6E-21 140.8 12.2 105 156-271 112-217 (340)
41 PLN02336 phosphoethanolamine N 99.7 3.4E-16 7.4E-21 147.1 13.9 109 156-273 36-146 (475)
42 PRK06922 hypothetical protein; 99.7 3E-16 6.5E-21 148.2 13.0 109 157-272 418-540 (677)
43 PF13489 Methyltransf_23: Meth 99.7 1.1E-16 2.4E-21 128.2 8.7 98 156-272 21-118 (161)
44 PRK00216 ubiE ubiquinone/menaq 99.7 3.1E-16 6.8E-21 133.8 11.6 109 157-272 51-161 (239)
45 PRK09489 rsmC 16S ribosomal RN 99.7 6.8E-16 1.5E-20 138.4 13.8 214 36-271 77-305 (342)
46 TIGR01934 MenG_MenH_UbiE ubiqu 99.7 7.2E-16 1.6E-20 130.2 13.0 107 156-272 38-146 (223)
47 PF05401 NodS: Nodulation prot 99.7 2.3E-16 5.1E-21 128.0 9.5 104 156-269 42-146 (201)
48 PRK11705 cyclopropane fatty ac 99.7 8.7E-16 1.9E-20 139.9 14.0 104 155-270 165-268 (383)
49 PRK08317 hypothetical protein; 99.7 1.5E-15 3.2E-20 129.4 14.3 107 155-270 17-125 (241)
50 COG4106 Tam Trans-aconitate me 99.7 2.8E-16 6E-21 128.2 9.1 104 155-272 28-134 (257)
51 PRK00107 gidB 16S rRNA methylt 99.7 7.1E-16 1.5E-20 126.9 11.3 101 157-270 45-146 (187)
52 PRK06202 hypothetical protein; 99.7 8.3E-16 1.8E-20 131.2 12.0 105 156-271 59-168 (232)
53 PRK13255 thiopurine S-methyltr 99.6 3.2E-15 7E-20 126.0 14.0 111 156-267 36-153 (218)
54 TIGR02716 C20_methyl_CrtF C-20 99.6 3.4E-15 7.3E-20 132.6 14.3 111 155-273 147-258 (306)
55 TIGR00138 gidB 16S rRNA methyl 99.6 1.3E-15 2.9E-20 124.9 9.9 100 157-269 42-142 (181)
56 KOG3178 Hydroxyindole-O-methyl 99.6 4.3E-15 9.4E-20 130.1 13.2 160 101-274 115-280 (342)
57 TIGR02469 CbiT precorrin-6Y C5 99.6 5.6E-15 1.2E-19 113.1 11.6 103 155-268 17-121 (124)
58 PRK00121 trmB tRNA (guanine-N( 99.6 1.4E-15 3.1E-20 127.0 8.7 107 157-269 40-156 (202)
59 PF05175 MTS: Methyltransferas 99.6 7.2E-15 1.6E-19 119.5 11.9 122 135-270 16-141 (170)
60 TIGR02021 BchM-ChlM magnesium 99.6 5.9E-15 1.3E-19 124.8 11.8 104 156-268 54-157 (219)
61 COG2813 RsmC 16S RNA G1207 met 99.6 1.6E-14 3.5E-19 124.8 13.1 217 35-270 37-267 (300)
62 PRK15001 SAM-dependent 23S rib 99.6 2.6E-14 5.6E-19 129.2 14.2 125 135-270 213-341 (378)
63 PRK13944 protein-L-isoaspartat 99.6 1.8E-14 3.9E-19 120.7 12.3 101 155-268 70-172 (205)
64 PRK07580 Mg-protoporphyrin IX 99.6 1.9E-14 4.1E-19 122.4 12.4 103 156-267 62-164 (230)
65 KOG1271 Methyltransferases [Ge 99.6 7E-15 1.5E-19 116.9 8.8 104 160-268 70-180 (227)
66 TIGR00537 hemK_rel_arch HemK-r 99.6 2.4E-14 5.2E-19 117.4 12.4 106 157-272 19-143 (179)
67 PLN02585 magnesium protoporphy 99.6 1.9E-14 4E-19 127.5 12.1 104 157-266 144-247 (315)
68 PRK11088 rrmA 23S rRNA methylt 99.6 1.7E-14 3.6E-19 126.1 11.1 94 157-270 85-182 (272)
69 PLN03075 nicotianamine synthas 99.6 2.7E-14 5.9E-19 124.3 11.4 106 157-268 123-232 (296)
70 PRK08287 cobalt-precorrin-6Y C 99.6 4.4E-14 9.5E-19 116.6 11.7 102 155-269 29-131 (187)
71 PRK05134 bifunctional 3-demeth 99.6 7.3E-14 1.6E-18 119.2 13.3 105 156-270 47-152 (233)
72 TIGR00091 tRNA (guanine-N(7)-) 99.6 1.5E-14 3.3E-19 120.1 8.8 107 157-269 16-132 (194)
73 TIGR03438 probable methyltrans 99.5 5.2E-14 1.1E-18 124.6 12.5 111 157-272 63-180 (301)
74 KOG2361 Predicted methyltransf 99.5 3.5E-14 7.7E-19 117.8 9.9 146 106-270 32-184 (264)
75 TIGR00406 prmA ribosomal prote 99.5 6.8E-14 1.5E-18 123.1 11.7 103 157-271 159-261 (288)
76 PRK13942 protein-L-isoaspartat 99.5 9.1E-14 2E-18 117.0 11.9 101 155-269 74-176 (212)
77 PRK13256 thiopurine S-methyltr 99.5 1.7E-13 3.7E-18 115.4 13.3 126 138-268 28-162 (226)
78 KOG3010 Methyltransferase [Gen 99.5 4.3E-14 9.2E-19 117.4 8.9 100 160-268 36-135 (261)
79 TIGR00080 pimt protein-L-isoas 99.5 1.4E-13 3.1E-18 116.1 12.3 100 155-268 75-176 (215)
80 PF13659 Methyltransf_26: Meth 99.5 2.5E-14 5.5E-19 108.7 6.8 107 158-269 1-115 (117)
81 TIGR01983 UbiG ubiquinone bios 99.5 1.2E-13 2.5E-18 117.1 11.5 105 157-270 45-150 (224)
82 COG4976 Predicted methyltransf 99.5 6.4E-15 1.4E-19 121.2 2.0 105 155-273 123-230 (287)
83 PF08003 Methyltransf_9: Prote 99.5 1.1E-13 2.3E-18 119.6 9.5 104 156-269 114-219 (315)
84 PRK14967 putative methyltransf 99.5 2.6E-13 5.5E-18 115.2 11.5 106 156-269 35-159 (223)
85 PRK00517 prmA ribosomal protei 99.5 1.3E-13 2.9E-18 118.9 9.3 98 156-271 118-215 (250)
86 COG4123 Predicted O-methyltran 99.5 1.9E-13 4.1E-18 115.8 9.7 109 155-268 42-169 (248)
87 TIGR03533 L3_gln_methyl protei 99.5 9.9E-13 2.1E-17 115.4 13.3 106 157-268 121-250 (284)
88 PRK04266 fibrillarin; Provisio 99.5 7.1E-13 1.5E-17 112.3 11.9 100 155-267 70-174 (226)
89 PRK00377 cbiT cobalt-precorrin 99.5 7.6E-13 1.7E-17 110.2 11.9 103 155-267 38-143 (198)
90 PLN02232 ubiquinone biosynthes 99.5 3.5E-13 7.5E-18 108.5 9.0 86 184-274 1-86 (160)
91 PRK00312 pcm protein-L-isoaspa 99.4 1E-12 2.2E-17 110.7 11.9 101 155-270 76-176 (212)
92 PRK11188 rrmJ 23S rRNA methylt 99.4 7E-13 1.5E-17 111.3 10.7 99 156-271 50-167 (209)
93 PRK14121 tRNA (guanine-N(7)-)- 99.4 7.1E-13 1.5E-17 119.5 11.3 107 156-268 121-234 (390)
94 PRK11805 N5-glutamine S-adenos 99.4 1.8E-12 3.9E-17 114.9 12.9 104 159-268 135-262 (307)
95 cd02440 AdoMet_MTases S-adenos 99.4 1.8E-12 3.9E-17 94.7 10.9 102 160-268 1-103 (107)
96 TIGR02081 metW methionine bios 99.4 7.7E-13 1.7E-17 109.8 9.8 91 157-262 13-105 (194)
97 TIGR03534 RF_mod_PrmC protein- 99.4 2.7E-12 5.8E-17 110.5 13.5 105 157-268 87-216 (251)
98 KOG1541 Predicted protein carb 99.4 9E-13 1.9E-17 108.0 9.7 100 157-268 50-159 (270)
99 TIGR00536 hemK_fam HemK family 99.4 2.6E-12 5.6E-17 112.9 13.4 104 159-268 116-243 (284)
100 PF00891 Methyltransf_2: O-met 99.4 1.4E-12 3E-17 111.9 10.9 103 155-273 98-203 (241)
101 PRK07402 precorrin-6B methylas 99.4 2.8E-12 6.2E-17 106.6 12.2 104 155-270 38-143 (196)
102 COG2264 PrmA Ribosomal protein 99.4 1.9E-12 4.1E-17 112.5 11.3 104 157-271 162-265 (300)
103 PRK00811 spermidine synthase; 99.4 2.5E-12 5.4E-17 112.9 10.8 112 156-268 75-190 (283)
104 PF05724 TPMT: Thiopurine S-me 99.4 9.6E-13 2.1E-17 110.9 7.8 125 138-267 22-153 (218)
105 TIGR01177 conserved hypothetic 99.4 5E-12 1.1E-16 113.4 12.7 108 155-269 180-294 (329)
106 PF06325 PrmA: Ribosomal prote 99.4 1.9E-12 4.2E-17 113.3 9.4 102 156-271 160-261 (295)
107 PRK14968 putative methyltransf 99.4 6E-12 1.3E-16 103.5 11.8 109 156-270 22-149 (188)
108 PF03291 Pox_MCEL: mRNA cappin 99.4 2.4E-12 5.1E-17 114.8 9.9 112 157-268 62-185 (331)
109 PF07021 MetW: Methionine bios 99.4 4.4E-12 9.6E-17 103.0 9.9 95 156-268 12-108 (193)
110 PRK09328 N5-glutamine S-adenos 99.4 1.5E-11 3.3E-16 107.4 13.8 106 156-268 107-237 (275)
111 COG2242 CobL Precorrin-6B meth 99.4 1.2E-11 2.6E-16 99.8 11.8 115 139-268 19-134 (187)
112 PTZ00146 fibrillarin; Provisio 99.3 1.3E-11 2.8E-16 107.2 12.5 103 154-268 129-236 (293)
113 PRK14966 unknown domain/N5-glu 99.3 1.2E-11 2.5E-16 112.5 12.5 104 157-267 251-379 (423)
114 PRK04457 spermidine synthase; 99.3 7E-12 1.5E-16 108.8 10.6 108 156-268 65-176 (262)
115 PRK13943 protein-L-isoaspartat 99.3 1E-11 2.2E-16 110.4 11.8 101 155-269 78-180 (322)
116 COG2518 Pcm Protein-L-isoaspar 99.3 1.2E-11 2.7E-16 101.9 11.3 101 155-270 70-170 (209)
117 PHA03411 putative methyltransf 99.3 8.9E-12 1.9E-16 107.2 10.7 100 157-268 64-182 (279)
118 PLN02781 Probable caffeoyl-CoA 99.3 8.5E-12 1.8E-16 106.5 10.5 105 156-271 67-179 (234)
119 smart00650 rADc Ribosomal RNA 99.3 1.7E-11 3.6E-16 99.6 10.2 102 155-268 11-112 (169)
120 PF01739 CheR: CheR methyltran 99.3 1.1E-11 2.4E-16 102.6 9.1 118 155-272 29-180 (196)
121 TIGR00438 rrmJ cell division p 99.3 1.7E-11 3.6E-16 101.3 9.5 97 155-268 30-145 (188)
122 TIGR03704 PrmC_rel_meth putati 99.3 3E-11 6.5E-16 104.2 11.3 102 158-268 87-215 (251)
123 PF05148 Methyltransf_8: Hypot 99.3 6E-12 1.3E-16 103.2 6.4 131 109-271 30-160 (219)
124 PRK01544 bifunctional N5-gluta 99.3 2E-11 4.3E-16 115.2 10.9 105 157-267 138-267 (506)
125 PF01135 PCMT: Protein-L-isoas 99.3 1.2E-11 2.6E-16 103.5 7.5 101 155-269 70-172 (209)
126 PRK14901 16S rRNA methyltransf 99.3 5.3E-11 1.1E-15 110.6 12.4 109 155-269 250-384 (434)
127 TIGR00563 rsmB ribosomal RNA s 99.3 7.1E-11 1.5E-15 109.5 13.1 111 155-270 236-369 (426)
128 PRK14904 16S rRNA methyltransf 99.2 7.3E-11 1.6E-15 110.0 12.4 109 155-270 248-378 (445)
129 PRK01581 speE spermidine synth 99.2 7.3E-11 1.6E-15 105.3 11.6 115 156-270 149-269 (374)
130 PRK10901 16S rRNA methyltransf 99.2 8.4E-11 1.8E-15 109.1 12.4 109 155-270 242-373 (427)
131 KOG1975 mRNA cap methyltransfe 99.2 2E-11 4.3E-16 105.4 7.4 130 135-268 99-236 (389)
132 PLN02366 spermidine synthase 99.2 8.5E-11 1.8E-15 103.9 11.6 111 156-268 90-205 (308)
133 TIGR00417 speE spermidine synt 99.2 5.7E-11 1.2E-15 103.7 10.3 110 157-268 72-185 (270)
134 PF06080 DUF938: Protein of un 99.2 1.4E-10 3E-15 95.6 11.7 110 160-274 28-146 (204)
135 PHA03412 putative methyltransf 99.2 7.2E-11 1.6E-15 99.4 10.2 95 158-264 50-158 (241)
136 COG2890 HemK Methylase of poly 99.2 8.1E-11 1.8E-15 102.9 10.7 99 160-268 113-237 (280)
137 TIGR00446 nop2p NOL1/NOP2/sun 99.2 7.9E-11 1.7E-15 102.4 10.4 110 155-270 69-200 (264)
138 KOG3045 Predicted RNA methylas 99.2 2.8E-11 6.1E-16 101.5 7.1 129 109-271 138-266 (325)
139 PRK11783 rlmL 23S rRNA m(2)G24 99.2 3.2E-11 6.9E-16 118.1 8.7 110 157-270 538-657 (702)
140 COG4122 Predicted O-methyltran 99.2 1.1E-10 2.4E-15 97.5 10.4 121 136-274 45-170 (219)
141 PRK15128 23S rRNA m(5)C1962 me 99.2 6.2E-11 1.3E-15 108.4 9.2 110 157-270 220-340 (396)
142 PRK14902 16S rRNA methyltransf 99.2 2.1E-10 4.5E-15 107.0 12.3 108 155-269 248-379 (444)
143 PRK14903 16S rRNA methyltransf 99.2 1.4E-10 3.1E-15 107.5 11.0 110 155-270 235-367 (431)
144 KOG2940 Predicted methyltransf 99.2 2.8E-11 6E-16 99.9 5.5 102 157-268 72-173 (325)
145 PRK10611 chemotaxis methyltran 99.2 1E-10 2.3E-15 102.1 9.4 115 157-271 115-266 (287)
146 PLN02476 O-methyltransferase 99.2 2.5E-10 5.5E-15 99.0 10.8 105 156-271 117-229 (278)
147 PF05219 DREV: DREV methyltran 99.2 1.7E-10 3.6E-15 97.8 9.3 95 157-269 94-188 (265)
148 PF01596 Methyltransf_3: O-met 99.1 1.2E-10 2.7E-15 97.1 7.5 104 157-271 45-156 (205)
149 PRK10909 rsmD 16S rRNA m(2)G96 99.1 2.9E-10 6.3E-15 94.5 9.5 105 157-270 53-160 (199)
150 KOG1499 Protein arginine N-met 99.1 1.8E-10 4E-15 101.1 8.3 105 157-267 60-165 (346)
151 PRK03612 spermidine synthase; 99.1 3.6E-10 7.7E-15 107.2 10.8 113 156-268 296-414 (521)
152 PRK13168 rumA 23S rRNA m(5)U19 99.1 4.5E-10 9.8E-15 104.7 10.9 103 155-270 295-401 (443)
153 PLN02672 methionine S-methyltr 99.1 5.5E-10 1.2E-14 112.1 11.7 110 158-267 119-276 (1082)
154 COG3963 Phospholipid N-methylt 99.1 1.4E-09 3E-14 85.8 10.7 116 139-268 33-155 (194)
155 COG2519 GCD14 tRNA(1-methylade 99.1 1E-09 2.2E-14 92.6 10.1 102 155-269 92-195 (256)
156 PF02390 Methyltransf_4: Putat 99.1 5.9E-10 1.3E-14 92.5 8.6 106 158-269 18-133 (195)
157 KOG2899 Predicted methyltransf 99.1 1.1E-09 2.4E-14 91.2 9.7 110 156-267 57-207 (288)
158 PF10294 Methyltransf_16: Puta 99.0 6E-10 1.3E-14 90.8 7.7 110 155-270 43-157 (173)
159 PRK03522 rumB 23S rRNA methylu 99.0 9.2E-10 2E-14 98.2 9.5 102 157-270 173-275 (315)
160 COG2263 Predicted RNA methylas 99.0 6.4E-10 1.4E-14 89.7 7.4 76 156-241 44-119 (198)
161 COG1352 CheR Methylase of chem 99.0 2.1E-09 4.6E-14 92.8 10.7 116 157-272 96-246 (268)
162 PLN02589 caffeoyl-CoA O-methyl 99.0 1.8E-09 4E-14 92.5 10.1 104 157-271 79-191 (247)
163 PF05185 PRMT5: PRMT5 arginine 98.9 2.7E-09 5.8E-14 99.0 8.0 103 158-266 187-294 (448)
164 PF03141 Methyltransf_29: Puta 98.9 7.9E-10 1.7E-14 101.3 4.4 147 108-270 72-220 (506)
165 TIGR00479 rumA 23S rRNA (uraci 98.9 5.3E-09 1.2E-13 97.3 9.9 104 155-270 290-397 (431)
166 TIGR02085 meth_trns_rumB 23S r 98.9 6.5E-09 1.4E-13 94.8 10.1 102 157-270 233-335 (374)
167 TIGR00095 RNA methyltransferas 98.9 7.4E-09 1.6E-13 85.5 9.1 104 157-268 49-158 (189)
168 PRK11727 23S rRNA mA1618 methy 98.9 7.9E-09 1.7E-13 91.7 9.7 83 157-244 114-203 (321)
169 PRK14896 ksgA 16S ribosomal RN 98.9 2.6E-08 5.6E-13 86.4 12.8 77 155-242 27-103 (258)
170 COG0220 Predicted S-adenosylme 98.9 7.9E-09 1.7E-13 87.3 8.7 104 159-268 50-163 (227)
171 KOG1500 Protein arginine N-met 98.9 9.4E-09 2E-13 89.5 9.2 105 156-267 176-280 (517)
172 KOG2904 Predicted methyltransf 98.9 1.7E-08 3.7E-13 85.7 10.5 109 157-270 148-286 (328)
173 PF12147 Methyltransf_20: Puta 98.9 3.4E-08 7.4E-13 84.9 12.3 109 155-268 133-248 (311)
174 PRK00274 ksgA 16S ribosomal RN 98.9 2E-08 4.4E-13 87.7 11.2 76 155-240 40-115 (272)
175 TIGR00478 tly hemolysin TlyA f 98.9 9E-09 1.9E-13 87.2 8.4 94 157-267 75-169 (228)
176 COG1092 Predicted SAM-dependen 98.9 9E-09 1.9E-13 93.3 8.5 111 157-271 217-338 (393)
177 PLN02823 spermine synthase 98.8 2.9E-08 6.3E-13 88.8 11.5 111 156-268 102-219 (336)
178 PF08704 GCD14: tRNA methyltra 98.8 8.2E-09 1.8E-13 88.3 7.3 102 155-268 38-145 (247)
179 PF09243 Rsm22: Mitochondrial 98.8 2.1E-08 4.6E-13 87.6 9.9 112 156-276 32-146 (274)
180 TIGR00755 ksgA dimethyladenosi 98.8 2.6E-08 5.7E-13 86.1 10.4 76 155-241 27-105 (253)
181 COG0421 SpeE Spermidine syntha 98.8 5.2E-08 1.1E-12 85.0 9.7 109 157-268 76-189 (282)
182 PTZ00338 dimethyladenosine tra 98.7 5.2E-08 1.1E-12 85.8 9.1 80 155-242 34-113 (294)
183 PF10672 Methyltrans_SAM: S-ad 98.7 2.1E-08 4.5E-13 87.5 6.5 111 157-271 123-240 (286)
184 PRK04148 hypothetical protein; 98.7 1.4E-07 3E-12 72.8 10.2 91 157-268 16-108 (134)
185 PF01170 UPF0020: Putative RNA 98.7 9.2E-08 2E-12 78.3 9.4 111 155-270 26-152 (179)
186 KOG1269 SAM-dependent methyltr 98.7 1.2E-08 2.6E-13 91.9 4.4 112 155-273 108-219 (364)
187 PRK00536 speE spermidine synth 98.7 8.2E-08 1.8E-12 82.8 8.4 101 155-268 70-170 (262)
188 KOG3420 Predicted RNA methylas 98.7 2.3E-08 4.9E-13 77.1 4.0 79 156-241 47-125 (185)
189 PRK04338 N(2),N(2)-dimethylgua 98.6 9.4E-08 2E-12 87.2 7.9 99 158-268 58-157 (382)
190 PRK01544 bifunctional N5-gluta 98.6 1E-07 2.3E-12 90.1 8.5 107 156-268 346-461 (506)
191 PRK05031 tRNA (uracil-5-)-meth 98.6 1.4E-07 2.9E-12 85.8 8.7 98 159-270 208-321 (362)
192 PF03602 Cons_hypoth95: Conser 98.6 3.7E-08 8E-13 80.9 4.5 105 157-268 42-152 (183)
193 COG1041 Predicted DNA modifica 98.6 2.7E-07 5.8E-12 81.7 10.0 109 155-270 195-311 (347)
194 PF01564 Spermine_synth: Sperm 98.6 6.2E-08 1.3E-12 83.3 5.1 112 156-269 75-191 (246)
195 TIGR03439 methyl_EasF probable 98.6 6.3E-07 1.4E-11 79.6 11.4 112 156-271 75-200 (319)
196 TIGR02143 trmA_only tRNA (urac 98.6 1.6E-07 3.5E-12 85.0 7.8 98 159-270 199-312 (353)
197 COG0500 SmtA SAM-dependent met 98.6 1.5E-06 3.2E-11 67.4 12.2 102 161-272 52-158 (257)
198 PF07942 N2227: N2227-like pro 98.5 4.1E-07 8.8E-12 78.6 9.0 109 156-267 55-200 (270)
199 KOG1663 O-methyltransferase [S 98.5 1.8E-06 3.9E-11 71.9 11.7 114 139-270 62-183 (237)
200 PF02527 GidB: rRNA small subu 98.5 6.5E-07 1.4E-11 73.4 9.1 96 160-268 51-147 (184)
201 KOG1661 Protein-L-isoaspartate 98.5 5.3E-07 1.2E-11 73.9 8.4 105 156-268 81-192 (237)
202 PF02475 Met_10: Met-10+ like- 98.5 2.1E-07 4.7E-12 77.2 6.1 99 156-266 100-199 (200)
203 COG2521 Predicted archaeal met 98.5 1.7E-07 3.8E-12 77.9 4.4 110 155-268 132-244 (287)
204 PRK11933 yebU rRNA (cytosine-C 98.5 1.5E-06 3.1E-11 81.3 11.0 109 155-269 111-242 (470)
205 KOG1331 Predicted methyltransf 98.5 1.5E-07 3.4E-12 80.6 4.2 96 157-268 45-142 (293)
206 KOG3191 Predicted N6-DNA-methy 98.4 1.3E-06 2.7E-11 70.2 8.5 103 158-268 44-167 (209)
207 COG2520 Predicted methyltransf 98.4 1E-06 2.3E-11 78.4 8.3 109 156-275 187-295 (341)
208 COG0742 N6-adenine-specific me 98.4 2.4E-06 5.3E-11 69.5 8.7 107 156-269 42-154 (187)
209 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.3 7.5E-07 1.6E-11 76.5 4.9 117 156-272 55-202 (256)
210 TIGR00308 TRM1 tRNA(guanine-26 98.3 1.8E-06 3.9E-11 78.5 7.6 99 158-268 45-146 (374)
211 COG0030 KsgA Dimethyladenosine 98.3 2.7E-06 6E-11 72.9 7.8 77 155-240 28-105 (259)
212 PRK00050 16S rRNA m(4)C1402 me 98.3 1.3E-06 2.7E-11 76.8 5.8 76 155-238 17-98 (296)
213 COG4076 Predicted RNA methylas 98.3 2E-06 4.3E-11 69.4 6.3 102 159-269 34-135 (252)
214 KOG0820 Ribosomal RNA adenine 98.3 4.4E-06 9.6E-11 71.2 8.6 76 155-238 56-131 (315)
215 KOG3987 Uncharacterized conser 98.2 4.3E-07 9.3E-12 74.3 1.3 96 155-268 110-206 (288)
216 PF02384 N6_Mtase: N-6 DNA Met 98.2 6.4E-06 1.4E-10 73.3 8.3 110 155-268 44-182 (311)
217 COG0357 GidB Predicted S-adeno 98.2 1.1E-05 2.5E-10 67.4 9.0 97 158-266 68-165 (215)
218 COG2265 TrmA SAM-dependent met 98.2 8.7E-06 1.9E-10 75.3 9.1 105 155-271 291-398 (432)
219 KOG2352 Predicted spermine/spe 98.2 1.1E-05 2.4E-10 74.1 9.5 105 159-270 50-162 (482)
220 PF04672 Methyltransf_19: S-ad 98.1 1.2E-05 2.6E-10 69.2 8.7 126 135-271 49-192 (267)
221 PF01728 FtsJ: FtsJ-like methy 98.1 7E-07 1.5E-11 73.1 1.1 96 157-269 23-139 (181)
222 PF09445 Methyltransf_15: RNA 98.1 2.1E-06 4.6E-11 68.7 3.2 72 160-237 2-76 (163)
223 PF08123 DOT1: Histone methyla 98.1 2.1E-05 4.5E-10 65.7 8.8 112 155-273 40-162 (205)
224 TIGR02987 met_A_Alw26 type II 98.1 1.4E-05 3E-10 76.3 8.7 79 157-241 31-123 (524)
225 PF11968 DUF3321: Putative met 98.1 1.7E-05 3.7E-10 65.8 7.8 89 157-268 51-148 (219)
226 PRK11783 rlmL 23S rRNA m(2)G24 98.1 2.4E-05 5.1E-10 77.2 10.0 108 156-268 189-346 (702)
227 PF00398 RrnaAD: Ribosomal RNA 98.0 3.7E-05 8E-10 66.8 9.4 100 155-268 28-133 (262)
228 COG3897 Predicted methyltransf 98.0 2.2E-05 4.8E-10 63.9 7.1 102 156-270 78-180 (218)
229 KOG1709 Guanidinoacetate methy 98.0 5E-05 1.1E-09 62.7 8.8 104 156-268 100-205 (271)
230 KOG2730 Methylase [General fun 98.0 6E-06 1.3E-10 68.3 3.2 76 157-238 94-173 (263)
231 PF13679 Methyltransf_32: Meth 97.9 8.3E-05 1.8E-09 58.4 8.9 86 155-244 23-113 (141)
232 PF05958 tRNA_U5-meth_tr: tRNA 97.9 4.2E-05 9E-10 69.3 8.0 78 160-244 199-292 (352)
233 TIGR01444 fkbM_fam methyltrans 97.8 4.4E-05 9.6E-10 59.7 6.4 57 160-222 1-58 (143)
234 KOG3201 Uncharacterized conser 97.8 2E-05 4.2E-10 62.2 4.1 134 130-269 5-140 (201)
235 PF04816 DUF633: Family of unk 97.8 7.3E-05 1.6E-09 62.4 7.9 73 161-239 1-75 (205)
236 COG0116 Predicted N6-adenine-s 97.8 0.00027 5.8E-09 63.7 11.8 110 155-269 189-344 (381)
237 COG4262 Predicted spermidine s 97.8 0.00014 3E-09 64.7 9.6 111 156-270 288-408 (508)
238 COG0144 Sun tRNA and rRNA cyto 97.8 0.00028 6E-09 64.0 11.8 109 155-269 154-288 (355)
239 PRK11760 putative 23S rRNA C24 97.8 8.8E-05 1.9E-09 66.0 8.2 88 155-262 209-296 (357)
240 COG0293 FtsJ 23S rRNA methylas 97.8 0.00013 2.8E-09 60.4 8.0 100 155-271 43-161 (205)
241 COG1189 Predicted rRNA methyla 97.8 6.2E-05 1.3E-09 63.3 6.2 98 155-267 77-176 (245)
242 PF03059 NAS: Nicotianamine sy 97.7 7.4E-05 1.6E-09 64.9 6.7 106 157-268 120-229 (276)
243 PF01269 Fibrillarin: Fibrilla 97.7 0.00034 7.4E-09 58.4 10.2 104 153-268 69-177 (229)
244 COG4627 Uncharacterized protei 97.7 1.6E-05 3.4E-10 62.3 1.4 55 214-268 31-85 (185)
245 COG5459 Predicted rRNA methyla 97.7 5.2E-05 1.1E-09 66.9 4.6 117 157-276 113-232 (484)
246 PF13578 Methyltransf_24: Meth 97.6 1.7E-05 3.6E-10 59.0 0.8 99 162-269 1-105 (106)
247 COG4798 Predicted methyltransf 97.6 0.00014 3E-09 59.2 5.8 109 155-274 46-171 (238)
248 KOG2915 tRNA(1-methyladenosine 97.6 0.00084 1.8E-08 57.5 10.3 98 155-264 103-204 (314)
249 KOG2187 tRNA uracil-5-methyltr 97.6 9.8E-05 2.1E-09 68.3 5.0 75 140-224 369-443 (534)
250 PF05971 Methyltransf_10: Prot 97.4 0.00067 1.4E-08 59.6 8.2 82 158-244 103-191 (299)
251 PF03141 Methyltransf_29: Puta 97.4 0.00016 3.4E-09 67.0 4.4 101 156-271 364-469 (506)
252 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.4 0.00044 9.5E-09 60.8 6.3 109 155-269 83-219 (283)
253 KOG2798 Putative trehalase [Ca 97.3 0.00088 1.9E-08 58.5 7.6 110 156-268 149-295 (369)
254 PF06962 rRNA_methylase: Putat 97.3 0.00049 1.1E-08 53.6 5.5 80 182-268 1-91 (140)
255 COG1889 NOP1 Fibrillarin-like 97.2 0.0062 1.3E-07 50.1 10.7 115 142-268 61-179 (231)
256 COG2384 Predicted SAM-dependen 97.1 0.0064 1.4E-07 50.7 10.5 78 157-239 16-94 (226)
257 KOG2793 Putative N2,N2-dimethy 97.1 0.0021 4.6E-08 54.9 7.9 111 157-270 86-200 (248)
258 TIGR00006 S-adenosyl-methyltra 97.1 0.0015 3.3E-08 57.7 6.6 76 155-237 18-99 (305)
259 cd00315 Cyt_C5_DNA_methylase C 97.0 0.0059 1.3E-07 53.4 10.1 100 160-273 2-114 (275)
260 KOG1501 Arginine N-methyltrans 97.0 0.0014 2.9E-08 59.8 5.9 100 158-262 67-168 (636)
261 KOG3115 Methyltransferase-like 97.0 0.0016 3.5E-08 53.5 5.6 114 157-270 60-184 (249)
262 PF07091 FmrO: Ribosomal RNA m 97.0 0.0019 4.1E-08 55.0 6.2 99 135-247 89-188 (251)
263 KOG4589 Cell division protein 96.9 0.0063 1.4E-07 49.5 8.5 100 155-271 67-186 (232)
264 PHA01634 hypothetical protein 96.9 0.0031 6.8E-08 47.9 6.1 47 157-203 28-74 (156)
265 KOG2539 Mitochondrial/chloropl 96.9 0.031 6.7E-07 51.6 13.2 118 156-275 199-321 (491)
266 PLN02668 indole-3-acetate carb 96.8 0.0039 8.4E-08 56.9 7.4 45 225-269 157-237 (386)
267 PF03492 Methyltransf_7: SAM d 96.7 0.008 1.7E-07 54.1 8.5 108 155-268 14-182 (334)
268 PRK10742 putative methyltransf 96.7 0.0036 7.8E-08 53.5 5.5 108 160-270 91-220 (250)
269 KOG1562 Spermidine synthase [A 96.6 0.0026 5.7E-08 55.2 4.4 114 155-270 119-237 (337)
270 KOG1122 tRNA and rRNA cytosine 96.4 0.013 2.9E-07 53.3 7.7 109 154-269 238-371 (460)
271 PF06859 Bin3: Bicoid-interact 96.4 0.0017 3.8E-08 48.1 1.7 39 230-268 1-43 (110)
272 PF02636 Methyltransf_28: Puta 96.3 0.013 2.8E-07 50.5 7.2 46 157-202 18-72 (252)
273 KOG2920 Predicted methyltransf 96.3 0.0019 4.1E-08 55.8 1.6 112 155-268 114-233 (282)
274 KOG4058 Uncharacterized conser 96.2 0.035 7.5E-07 43.5 7.8 95 136-239 55-149 (199)
275 COG4301 Uncharacterized conser 96.1 0.052 1.1E-06 46.2 9.3 110 157-273 78-198 (321)
276 COG1064 AdhP Zn-dependent alco 96.1 0.034 7.5E-07 49.8 8.7 97 154-271 163-261 (339)
277 PF03269 DUF268: Caenorhabditi 95.9 0.05 1.1E-06 43.3 7.8 105 158-275 2-117 (177)
278 COG3129 Predicted SAM-dependen 95.9 0.026 5.7E-07 47.4 6.3 97 140-242 62-165 (292)
279 KOG0822 Protein kinase inhibit 95.8 0.028 6.1E-07 52.6 6.7 105 157-268 367-477 (649)
280 COG0270 Dcm Site-specific DNA 95.6 0.056 1.2E-06 48.5 8.0 103 158-273 3-119 (328)
281 PF02005 TRM: N2,N2-dimethylgu 95.6 0.022 4.8E-07 52.0 5.5 103 157-269 49-154 (377)
282 PRK09424 pntA NAD(P) transhydr 95.5 0.15 3.2E-06 48.5 10.7 99 155-268 162-284 (509)
283 PF01861 DUF43: Protein of unk 95.5 0.19 4E-06 42.8 10.2 102 157-268 44-148 (243)
284 PF07757 AdoMet_MTase: Predict 95.5 0.027 5.9E-07 41.6 4.4 46 139-188 43-88 (112)
285 COG0275 Predicted S-adenosylme 95.4 0.086 1.9E-06 46.2 8.2 74 155-235 21-101 (314)
286 PF11312 DUF3115: Protein of u 95.4 0.085 1.8E-06 46.5 8.1 116 157-272 86-245 (315)
287 cd08283 FDH_like_1 Glutathione 95.3 0.075 1.6E-06 48.7 7.9 105 155-269 182-306 (386)
288 KOG0024 Sorbitol dehydrogenase 95.3 0.11 2.3E-06 46.1 8.3 99 155-271 167-275 (354)
289 COG0286 HsdM Type I restrictio 95.2 0.22 4.9E-06 47.2 11.1 108 156-268 185-325 (489)
290 PF01795 Methyltransf_5: MraW 95.2 0.04 8.6E-07 48.8 5.5 75 155-236 18-99 (310)
291 COG1565 Uncharacterized conser 95.2 0.047 1E-06 49.0 5.9 50 154-203 74-132 (370)
292 PRK09880 L-idonate 5-dehydroge 95.0 0.14 2.9E-06 46.1 8.5 97 156-269 168-266 (343)
293 KOG1596 Fibrillarin and relate 95.0 0.16 3.5E-06 43.1 8.2 103 153-268 152-260 (317)
294 PF04445 SAM_MT: Putative SAM- 95.0 0.023 5E-07 48.2 3.2 83 159-242 77-163 (234)
295 TIGR00675 dcm DNA-methyltransf 94.7 0.092 2E-06 46.9 6.6 98 161-272 1-110 (315)
296 PF04989 CmcI: Cephalosporin h 94.6 0.092 2E-06 43.7 5.8 105 157-271 32-149 (206)
297 PF00145 DNA_methylase: C-5 cy 94.5 0.062 1.3E-06 47.7 5.0 98 160-273 2-113 (335)
298 TIGR00027 mthyl_TIGR00027 meth 94.4 0.52 1.1E-05 40.9 10.5 107 158-268 82-196 (260)
299 COG1063 Tdh Threonine dehydrog 94.3 0.47 1E-05 43.0 10.2 98 157-271 168-271 (350)
300 PRK11524 putative methyltransf 94.2 0.18 3.9E-06 44.3 7.3 59 138-202 194-252 (284)
301 PF11599 AviRa: RRNA methyltra 94.0 0.26 5.7E-06 41.2 7.3 115 155-269 49-214 (246)
302 PRK10458 DNA cytosine methylas 94.0 0.54 1.2E-05 44.3 10.3 46 156-201 86-131 (467)
303 PF11899 DUF3419: Protein of u 93.9 0.1 2.2E-06 47.8 5.1 58 212-269 275-334 (380)
304 PF01555 N6_N4_Mtase: DNA meth 93.9 0.19 4.1E-06 41.9 6.5 57 136-198 175-231 (231)
305 cd08254 hydroxyacyl_CoA_DH 6-h 93.6 0.81 1.8E-05 40.4 10.5 93 155-268 163-262 (338)
306 PF00107 ADH_zinc_N: Zinc-bind 93.6 0.46 1E-05 35.9 7.7 86 167-272 1-92 (130)
307 TIGR00561 pntA NAD(P) transhyd 93.3 0.28 6.1E-06 46.6 7.2 98 155-267 161-282 (511)
308 COG3510 CmcI Cephalosporin hyd 93.2 0.18 3.8E-06 41.4 4.8 104 157-273 69-184 (237)
309 cd05188 MDR Medium chain reduc 93.2 1.3 2.7E-05 37.6 10.6 98 156-270 133-233 (271)
310 COG1867 TRM1 N2,N2-dimethylgua 93.0 0.31 6.6E-06 44.0 6.4 100 158-269 53-154 (380)
311 cd08237 ribitol-5-phosphate_DH 92.9 0.64 1.4E-05 41.7 8.8 92 156-269 162-256 (341)
312 KOG2651 rRNA adenine N-6-methy 92.7 0.3 6.5E-06 44.2 5.9 43 156-198 152-194 (476)
313 TIGR02822 adh_fam_2 zinc-bindi 92.6 1.6 3.5E-05 39.0 10.8 92 155-270 163-255 (329)
314 KOG1099 SAM-dependent methyltr 92.5 0.39 8.5E-06 40.5 6.0 93 158-267 42-161 (294)
315 PRK13699 putative methylase; P 92.4 0.58 1.3E-05 39.7 7.3 59 138-202 149-207 (227)
316 PTZ00357 methyltransferase; Pr 92.4 0.54 1.2E-05 45.8 7.6 105 159-264 702-830 (1072)
317 cd08232 idonate-5-DH L-idonate 92.3 0.71 1.5E-05 41.1 8.2 95 157-268 165-261 (339)
318 PRK11524 putative methyltransf 92.2 0.095 2.1E-06 46.1 2.3 56 213-268 8-79 (284)
319 cd08230 glucose_DH Glucose deh 91.7 1.1 2.4E-05 40.3 8.8 96 156-270 171-270 (355)
320 PLN03154 putative allyl alcoho 90.9 1.1 2.3E-05 40.4 7.8 98 155-269 156-258 (348)
321 KOG1227 Putative methyltransfe 90.9 0.18 3.9E-06 44.1 2.5 107 157-275 194-303 (351)
322 PF05711 TylF: Macrocin-O-meth 90.8 0.93 2E-05 39.0 6.9 107 156-270 73-213 (248)
323 KOG1253 tRNA methyltransferase 90.8 0.22 4.8E-06 46.4 3.2 103 155-268 107-215 (525)
324 COG0686 Ald Alanine dehydrogen 90.6 0.57 1.2E-05 41.5 5.3 101 155-267 165-266 (371)
325 PF10354 DUF2431: Domain of un 90.5 0.99 2.1E-05 36.4 6.4 100 163-268 2-124 (166)
326 cd00401 AdoHcyase S-adenosyl-L 90.3 1.2 2.5E-05 41.4 7.4 88 156-269 200-289 (413)
327 KOG2198 tRNA cytosine-5-methyl 90.2 2.9 6.3E-05 37.9 9.6 110 154-269 152-296 (375)
328 KOG2078 tRNA modification enzy 90.0 0.15 3.4E-06 46.6 1.4 63 155-222 247-309 (495)
329 cd08255 2-desacetyl-2-hydroxye 89.9 3.2 7E-05 35.6 9.7 93 155-268 95-189 (277)
330 KOG2352 Predicted spermine/spe 89.8 0.29 6.2E-06 45.7 3.0 109 156-271 294-418 (482)
331 PRK13699 putative methylase; P 89.3 0.37 7.9E-06 40.9 3.2 52 216-267 4-70 (227)
332 TIGR03451 mycoS_dep_FDH mycoth 89.2 3.9 8.5E-05 36.8 10.0 98 155-269 174-276 (358)
333 TIGR01202 bchC 2-desacetyl-2-h 89.0 2.6 5.6E-05 37.2 8.5 86 157-269 144-231 (308)
334 PRK01747 mnmC bifunctional tRN 88.9 1 2.3E-05 44.4 6.4 111 156-266 56-203 (662)
335 PF02254 TrkA_N: TrkA-N domain 88.6 4.1 8.9E-05 30.0 8.2 85 166-268 4-95 (116)
336 cd08245 CAD Cinnamyl alcohol d 88.5 3.5 7.6E-05 36.4 9.1 96 155-269 160-256 (330)
337 PF04072 LCM: Leucine carboxyl 88.4 1.6 3.4E-05 35.6 6.3 93 159-255 80-182 (183)
338 cd08234 threonine_DH_like L-th 88.1 5.1 0.00011 35.3 10.0 95 155-269 157-257 (334)
339 TIGR02825 B4_12hDH leukotriene 88.0 6.5 0.00014 34.7 10.5 96 155-268 136-236 (325)
340 PF07279 DUF1442: Protein of u 87.9 7.5 0.00016 32.6 9.9 119 136-273 27-152 (218)
341 COG0604 Qor NADPH:quinone redu 87.9 2.9 6.3E-05 37.5 8.1 100 155-272 140-244 (326)
342 cd08293 PTGR2 Prostaglandin re 87.8 2 4.3E-05 38.3 7.1 93 159-268 156-253 (345)
343 cd08281 liver_ADH_like1 Zinc-d 87.4 5.4 0.00012 36.1 9.8 99 155-270 189-291 (371)
344 TIGR03201 dearomat_had 6-hydro 87.4 6.7 0.00015 35.1 10.3 45 155-199 164-209 (349)
345 TIGR03366 HpnZ_proposed putati 87.3 5.5 0.00012 34.5 9.5 97 156-270 119-219 (280)
346 cd08239 THR_DH_like L-threonin 87.3 7.3 0.00016 34.6 10.4 98 155-269 161-262 (339)
347 cd08295 double_bond_reductase_ 86.5 3.8 8.2E-05 36.5 8.2 97 155-268 149-250 (338)
348 COG4017 Uncharacterized protei 86.4 4.2 9.1E-05 33.5 7.3 72 156-246 43-115 (254)
349 cd08294 leukotriene_B4_DH_like 86.3 3.2 7E-05 36.5 7.5 96 155-268 141-240 (329)
350 TIGR00518 alaDH alanine dehydr 86.0 1.2 2.6E-05 40.7 4.7 99 157-267 166-265 (370)
351 cd05278 FDH_like Formaldehyde 85.2 6.2 0.00013 35.0 8.9 96 155-268 165-266 (347)
352 cd08261 Zn_ADH7 Alcohol dehydr 84.6 12 0.00027 33.0 10.5 97 155-269 157-258 (337)
353 PF03514 GRAS: GRAS domain fam 84.6 5.4 0.00012 36.6 8.2 111 155-268 108-243 (374)
354 COG3315 O-Methyltransferase in 84.5 5.4 0.00012 35.3 7.9 106 158-269 93-209 (297)
355 PLN02740 Alcohol dehydrogenase 83.8 10 0.00022 34.5 9.9 98 155-269 196-300 (381)
356 PRK10309 galactitol-1-phosphat 83.5 4 8.7E-05 36.5 6.9 99 155-270 158-261 (347)
357 cd05285 sorbitol_DH Sorbitol d 82.8 15 0.00032 32.7 10.2 96 155-268 160-264 (343)
358 PRK07417 arogenate dehydrogena 82.6 9.9 0.00021 33.1 8.8 84 160-265 2-87 (279)
359 PRK07502 cyclohexadienyl dehyd 82.4 5.5 0.00012 35.2 7.2 89 159-267 7-98 (307)
360 TIGR00936 ahcY adenosylhomocys 82.3 5.4 0.00012 36.9 7.3 87 157-269 194-282 (406)
361 PRK08267 short chain dehydroge 82.2 14 0.00031 31.2 9.6 70 160-239 3-86 (260)
362 KOG0821 Predicted ribosomal RN 81.9 1.4 3.1E-05 37.0 3.0 61 157-224 50-110 (326)
363 PLN02586 probable cinnamyl alc 81.3 6.8 0.00015 35.4 7.6 95 156-269 182-278 (360)
364 PRK05708 2-dehydropantoate 2-r 80.8 18 0.00038 32.1 9.9 101 159-270 3-105 (305)
365 PF11899 DUF3419: Protein of u 80.3 4.2 9.1E-05 37.3 5.8 46 155-201 33-78 (380)
366 PRK05476 S-adenosyl-L-homocyst 80.2 6.1 0.00013 36.8 6.9 87 157-269 211-299 (425)
367 cd08285 NADP_ADH NADP(H)-depen 80.1 21 0.00046 31.8 10.4 97 155-269 164-266 (351)
368 cd08238 sorbose_phosphate_red 79.9 24 0.00053 32.4 10.9 100 155-267 173-286 (410)
369 COG1748 LYS9 Saccharopine dehy 79.8 6.2 0.00013 36.3 6.7 73 159-241 2-79 (389)
370 PRK05786 fabG 3-ketoacyl-(acyl 79.8 17 0.00037 30.2 9.1 103 158-269 5-135 (238)
371 COG0541 Ffh Signal recognition 79.7 8.5 0.00019 35.8 7.5 110 155-273 97-225 (451)
372 cd08242 MDR_like Medium chain 79.5 31 0.00068 30.1 11.1 92 155-269 153-245 (319)
373 COG0287 TyrA Prephenate dehydr 79.4 6 0.00013 34.7 6.3 88 159-266 4-95 (279)
374 cd08300 alcohol_DH_class_III c 79.1 23 0.0005 32.0 10.3 99 155-270 184-289 (368)
375 PRK05872 short chain dehydroge 78.9 22 0.00048 31.0 9.9 75 157-240 8-95 (296)
376 PF05050 Methyltransf_21: Meth 78.9 4.1 8.9E-05 31.8 4.8 37 163-199 1-42 (167)
377 TIGR02818 adh_III_F_hyde S-(hy 78.9 23 0.0005 32.0 10.2 99 155-270 183-288 (368)
378 PLN02827 Alcohol dehydrogenase 78.9 16 0.00034 33.3 9.1 97 155-268 191-294 (378)
379 COG1255 Uncharacterized protei 78.7 23 0.00051 26.7 8.1 87 157-268 13-101 (129)
380 COG5379 BtaA S-adenosylmethion 77.9 3.8 8.3E-05 36.0 4.4 73 187-270 293-367 (414)
381 cd08231 MDR_TM0436_like Hypoth 77.8 25 0.00054 31.5 10.1 95 157-269 177-280 (361)
382 PRK08265 short chain dehydroge 77.4 27 0.00058 29.7 9.8 71 158-239 6-89 (261)
383 PRK08306 dipicolinate synthase 77.1 7.7 0.00017 34.3 6.3 87 157-266 151-238 (296)
384 PF01210 NAD_Gly3P_dh_N: NAD-d 77.0 6.8 0.00015 31.0 5.5 98 161-267 2-101 (157)
385 PLN02494 adenosylhomocysteinas 76.5 5.5 0.00012 37.6 5.4 89 157-270 253-342 (477)
386 PRK07066 3-hydroxybutyryl-CoA 76.4 9.2 0.0002 34.3 6.7 100 158-265 7-115 (321)
387 PRK07533 enoyl-(acyl carrier p 76.4 28 0.0006 29.6 9.6 103 157-268 9-147 (258)
388 PRK03562 glutathione-regulated 76.1 25 0.00054 34.6 10.1 93 158-268 400-497 (621)
389 PLN02514 cinnamyl-alcohol dehy 75.8 17 0.00038 32.6 8.5 97 156-270 179-276 (357)
390 PF02153 PDH: Prephenate dehyd 75.7 4.2 9.1E-05 35.1 4.3 74 172-266 2-76 (258)
391 cd08236 sugar_DH NAD(P)-depend 75.7 32 0.00068 30.4 10.1 97 155-269 157-258 (343)
392 cd01842 SGNH_hydrolase_like_5 75.6 6.2 0.00014 32.1 4.8 45 227-271 47-101 (183)
393 PRK08085 gluconate 5-dehydroge 75.4 36 0.00078 28.6 10.0 74 158-239 9-95 (254)
394 COG2933 Predicted SAM-dependen 75.4 7.8 0.00017 33.7 5.5 35 155-190 209-243 (358)
395 PF05206 TRM13: Methyltransfer 75.0 8.2 0.00018 33.5 5.8 35 156-190 17-57 (259)
396 PRK08324 short chain dehydroge 74.8 19 0.00041 35.8 9.1 103 157-268 421-556 (681)
397 TIGR00497 hsdM type I restrict 74.4 23 0.00051 33.7 9.3 44 157-200 217-265 (501)
398 cd05213 NAD_bind_Glutamyl_tRNA 74.2 15 0.00032 32.7 7.4 43 157-199 177-221 (311)
399 cd08296 CAD_like Cinnamyl alco 73.8 13 0.00029 32.8 7.2 97 155-268 161-258 (333)
400 cd08233 butanediol_DH_like (2R 73.6 53 0.0011 29.2 11.0 98 155-269 170-272 (351)
401 TIGR00692 tdh L-threonine 3-de 73.5 40 0.00086 29.9 10.2 96 156-269 160-261 (340)
402 PRK15001 SAM-dependent 23S rib 73.2 65 0.0014 29.6 11.4 99 160-272 47-145 (378)
403 PRK09496 trkA potassium transp 73.1 43 0.00093 31.1 10.7 69 157-238 230-305 (453)
404 cd08298 CAD2 Cinnamyl alcohol 72.9 46 0.001 29.1 10.4 91 155-269 165-256 (329)
405 cd08277 liver_alcohol_DH_like 72.9 41 0.0009 30.2 10.2 98 155-269 182-286 (365)
406 KOG3924 Putative protein methy 72.6 4.4 9.5E-05 37.1 3.6 115 155-273 190-312 (419)
407 PRK08277 D-mannonate oxidoredu 72.3 31 0.00066 29.6 8.9 74 158-239 10-96 (278)
408 COG1568 Predicted methyltransf 71.7 14 0.0003 32.4 6.2 102 157-268 152-259 (354)
409 PF01488 Shikimate_DH: Shikima 71.3 6.3 0.00014 30.3 3.9 75 157-242 11-87 (135)
410 PRK06249 2-dehydropantoate 2-r 70.8 15 0.00032 32.6 6.7 102 157-270 4-107 (313)
411 PF02558 ApbA: Ketopantoate re 70.6 9.9 0.00021 29.4 4.9 100 161-270 1-102 (151)
412 cd08263 Zn_ADH10 Alcohol dehyd 70.4 46 0.001 29.9 9.9 96 156-268 186-286 (367)
413 PRK10669 putative cation:proto 70.4 42 0.00091 32.4 10.1 90 159-268 418-514 (558)
414 PRK03659 glutathione-regulated 70.0 39 0.00084 33.1 9.8 92 159-268 401-497 (601)
415 cd08241 QOR1 Quinone oxidoredu 69.8 50 0.0011 28.3 9.8 95 155-268 137-237 (323)
416 PLN02178 cinnamyl-alcohol dehy 69.6 18 0.00039 33.0 7.1 93 157-269 178-273 (375)
417 PRK07109 short chain dehydroge 69.5 38 0.00081 30.3 9.0 75 157-239 7-94 (334)
418 PRK06522 2-dehydropantoate 2-r 69.4 36 0.00078 29.6 8.8 98 160-270 2-101 (304)
419 PRK12823 benD 1,6-dihydroxycyc 69.0 62 0.0013 27.2 10.0 72 158-238 8-92 (260)
420 PRK07984 enoyl-(acyl carrier p 69.0 70 0.0015 27.3 10.4 73 158-239 6-93 (262)
421 TIGR00872 gnd_rel 6-phosphoglu 68.7 20 0.00043 31.6 7.0 87 160-266 2-90 (298)
422 PTZ00075 Adenosylhomocysteinas 68.6 8.8 0.00019 36.3 4.8 87 156-268 252-340 (476)
423 cd05289 MDR_like_2 alcohol deh 68.5 48 0.001 28.3 9.4 94 155-268 142-237 (309)
424 PRK09260 3-hydroxybutyryl-CoA 68.3 26 0.00056 30.6 7.6 100 160-267 3-115 (288)
425 cd08301 alcohol_DH_plants Plan 67.8 54 0.0012 29.5 9.8 98 155-269 185-289 (369)
426 cd08278 benzyl_alcohol_DH Benz 67.6 44 0.00096 30.1 9.2 96 155-269 184-285 (365)
427 cd01065 NAD_bind_Shikimate_DH 67.6 22 0.00048 27.5 6.4 44 157-200 18-63 (155)
428 PRK07985 oxidoreductase; Provi 67.5 49 0.0011 28.8 9.2 104 157-268 48-184 (294)
429 PRK06079 enoyl-(acyl carrier p 67.4 40 0.00086 28.5 8.4 102 157-269 6-143 (252)
430 COG1893 ApbA Ketopantoate redu 67.3 35 0.00076 30.3 8.2 99 160-270 2-102 (307)
431 PF03686 UPF0146: Uncharacteri 67.1 10 0.00022 29.0 4.1 87 157-268 13-101 (127)
432 TIGR02819 fdhA_non_GSH formald 67.0 46 0.00099 30.6 9.2 105 155-270 183-300 (393)
433 PRK12921 2-dehydropantoate 2-r 66.8 31 0.00067 30.1 7.8 99 160-270 2-103 (305)
434 cd05281 TDH Threonine dehydrog 66.8 23 0.0005 31.4 7.1 96 156-269 162-262 (341)
435 cd08265 Zn_ADH3 Alcohol dehydr 66.1 55 0.0012 29.7 9.6 97 155-268 201-306 (384)
436 PRK06701 short chain dehydroge 65.9 37 0.0008 29.5 8.1 105 157-269 45-181 (290)
437 PRK08507 prephenate dehydrogen 65.4 36 0.00078 29.4 7.9 84 160-266 2-88 (275)
438 PRK12937 short chain dehydroge 65.3 64 0.0014 26.7 9.2 105 157-269 4-139 (245)
439 PRK10083 putative oxidoreducta 65.3 79 0.0017 27.8 10.3 98 155-269 158-259 (339)
440 KOG1201 Hydroxysteroid 17-beta 65.1 36 0.00077 30.1 7.6 76 156-240 36-124 (300)
441 cd08266 Zn_ADH_like1 Alcohol d 65.1 71 0.0015 27.7 9.9 95 155-268 164-264 (342)
442 cd01075 NAD_bind_Leu_Phe_Val_D 65.0 38 0.00083 28.0 7.6 44 157-200 27-71 (200)
443 PRK05396 tdh L-threonine 3-deh 64.9 66 0.0014 28.4 9.7 95 157-269 163-263 (341)
444 cd05288 PGDH Prostaglandin deh 64.9 78 0.0017 27.6 10.1 95 155-268 143-243 (329)
445 TIGR02356 adenyl_thiF thiazole 64.5 11 0.00023 31.3 4.1 33 157-189 20-54 (202)
446 COG5379 BtaA S-adenosylmethion 64.4 16 0.00035 32.2 5.3 46 155-201 61-106 (414)
447 PRK06484 short chain dehydroge 64.0 47 0.001 31.5 9.0 72 157-239 4-88 (520)
448 KOG0023 Alcohol dehydrogenase, 63.7 25 0.00055 31.5 6.4 98 155-268 179-278 (360)
449 KOG2918 Carboxymethyl transfer 62.7 63 0.0014 28.9 8.6 117 156-273 86-230 (335)
450 PRK12939 short chain dehydroge 62.4 58 0.0013 27.0 8.5 73 158-239 7-93 (250)
451 KOG2912 Predicted DNA methylas 62.4 24 0.00051 31.6 5.9 75 161-241 106-189 (419)
452 PTZ00354 alcohol dehydrogenase 62.3 89 0.0019 27.1 10.0 96 155-268 138-239 (334)
453 PRK00094 gpsA NAD(P)H-dependen 62.3 59 0.0013 28.6 8.9 99 160-268 3-104 (325)
454 PF10237 N6-adenineMlase: Prob 62.0 81 0.0018 25.2 10.5 93 157-268 25-122 (162)
455 cd08246 crotonyl_coA_red croto 61.9 85 0.0018 28.5 10.0 44 155-198 191-236 (393)
456 PF06690 DUF1188: Protein of u 61.8 62 0.0013 27.7 8.1 68 159-245 43-111 (252)
457 cd08286 FDH_like_ADH2 formalde 61.8 92 0.002 27.5 10.1 96 155-268 164-265 (345)
458 cd08279 Zn_ADH_class_III Class 61.8 1.1E+02 0.0023 27.5 10.6 97 155-269 180-282 (363)
459 PLN02688 pyrroline-5-carboxyla 61.5 41 0.00088 28.8 7.5 85 160-266 2-92 (266)
460 PRK12744 short chain dehydroge 61.2 86 0.0019 26.3 9.4 101 158-267 8-143 (257)
461 cd05286 QOR2 Quinone oxidoredu 60.9 92 0.002 26.5 9.7 93 155-268 134-234 (320)
462 cd08270 MDR4 Medium chain dehy 60.9 1E+02 0.0022 26.5 9.9 89 157-269 132-222 (305)
463 PRK06997 enoyl-(acyl carrier p 60.8 52 0.0011 28.0 8.0 102 158-268 6-144 (260)
464 PRK06484 short chain dehydroge 60.4 82 0.0018 29.8 10.0 101 157-268 268-399 (520)
465 cd08267 MDR1 Medium chain dehy 60.3 77 0.0017 27.3 9.2 97 155-268 141-239 (319)
466 cd08274 MDR9 Medium chain dehy 60.2 1E+02 0.0022 27.1 10.1 92 155-268 175-272 (350)
467 cd08297 CAD3 Cinnamyl alcohol 60.1 1E+02 0.0023 27.0 10.1 95 155-268 163-264 (341)
468 PRK09496 trkA potassium transp 60.0 96 0.0021 28.8 10.2 89 160-267 2-97 (453)
469 PF03446 NAD_binding_2: NAD bi 60.0 11 0.00024 29.9 3.3 89 160-270 3-95 (163)
470 PRK12491 pyrroline-5-carboxyla 59.9 52 0.0011 28.6 7.8 87 159-267 3-94 (272)
471 COG0373 HemA Glutamyl-tRNA red 59.8 41 0.00089 31.3 7.4 69 157-239 177-247 (414)
472 PRK15057 UDP-glucose 6-dehydro 59.7 91 0.002 28.7 9.7 39 160-199 2-41 (388)
473 PRK06139 short chain dehydroge 59.7 34 0.00073 30.6 6.8 75 157-239 6-93 (330)
474 PRK14620 NAD(P)H-dependent gly 59.7 91 0.002 27.6 9.6 100 160-268 2-105 (326)
475 cd08243 quinone_oxidoreductase 59.6 1E+02 0.0023 26.4 9.9 93 155-269 140-238 (320)
476 PRK07806 short chain dehydroge 59.5 56 0.0012 27.2 7.9 104 157-268 5-133 (248)
477 PRK07680 late competence prote 59.4 48 0.001 28.6 7.6 87 160-266 2-93 (273)
478 PLN00203 glutamyl-tRNA reducta 59.3 40 0.00087 32.4 7.5 44 157-200 265-310 (519)
479 PRK08415 enoyl-(acyl carrier p 59.1 1.1E+02 0.0024 26.3 9.8 102 158-268 5-142 (274)
480 PRK06128 oxidoreductase; Provi 58.8 93 0.002 27.1 9.4 103 158-268 55-190 (300)
481 PF02826 2-Hacid_dh_C: D-isome 58.6 11 0.00024 30.4 3.2 38 157-194 35-73 (178)
482 PRK06505 enoyl-(acyl carrier p 58.5 1E+02 0.0022 26.4 9.4 103 157-268 6-144 (271)
483 KOG2671 Putative RNA methylase 58.5 6.5 0.00014 35.5 1.8 109 155-268 206-353 (421)
484 PRK06125 short chain dehydroge 58.3 63 0.0014 27.2 8.0 75 158-239 7-90 (259)
485 cd05292 LDH_2 A subgroup of L- 56.5 93 0.002 27.5 9.0 101 160-270 2-117 (308)
486 PRK05875 short chain dehydroge 56.4 98 0.0021 26.3 9.0 75 158-238 7-94 (276)
487 PRK08655 prephenate dehydrogen 56.0 39 0.00085 31.6 6.8 85 160-266 2-89 (437)
488 PF01555 N6_N4_Mtase: DNA meth 55.7 6.6 0.00014 32.4 1.5 22 247-268 34-55 (231)
489 cd05283 CAD1 Cinnamyl alcohol 55.6 77 0.0017 28.0 8.5 96 155-269 167-263 (337)
490 TIGR02437 FadB fatty oxidation 55.6 39 0.00085 33.9 7.0 101 157-266 312-425 (714)
491 TIGR01751 crot-CoA-red crotony 55.5 1.1E+02 0.0025 27.8 9.7 44 155-198 187-232 (398)
492 cd08289 MDR_yhfp_like Yhfp put 55.5 1.1E+02 0.0023 26.7 9.3 95 158-269 147-243 (326)
493 PRK06500 short chain dehydroge 55.4 1.2E+02 0.0026 25.1 9.5 70 158-238 6-88 (249)
494 PRK12743 oxidoreductase; Provi 55.3 99 0.0022 26.0 8.8 72 159-239 3-89 (256)
495 PRK07889 enoyl-(acyl carrier p 55.1 1.3E+02 0.0028 25.4 9.6 101 157-268 6-144 (256)
496 PRK06603 enoyl-(acyl carrier p 55.0 1.3E+02 0.0028 25.5 10.2 103 157-268 7-145 (260)
497 PF02719 Polysacc_synt_2: Poly 54.7 18 0.00039 32.0 4.0 76 164-244 3-91 (293)
498 COG0863 DNA modification methy 54.6 52 0.0011 28.5 7.0 60 137-202 207-266 (302)
499 cd05284 arabinose_DH_like D-ar 54.3 1.5E+02 0.0032 26.0 10.0 95 156-268 166-265 (340)
500 cd08240 6_hydroxyhexanoate_dh_ 54.1 1.6E+02 0.0034 26.1 10.7 93 157-269 175-274 (350)
No 1
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.95 E-value=4.2e-29 Score=205.35 Aligned_cols=167 Identities=54% Similarity=1.056 Sum_probs=133.4
Q ss_pred hhhHHHHHhhhcccccccccccccCCCCcccccccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCC
Q 023787 102 KTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN 181 (277)
Q Consensus 102 ~~~~y~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~ 181 (277)
.+.||.++.+||++++.+.+||++||+.+++.|+.+++.||..+.....+ ......++||+|||.|+.|..++.+.+.
T Consensus 2 ~~~~y~~a~~YW~~v~atvdGMLGG~~~is~~Di~gS~~FL~~l~~~~~~--~~~~~~~alDcGAGIGRVTk~lLl~~f~ 79 (218)
T PF05891_consen 2 KKIWYEKAKEYWENVPATVDGMLGGFGHISRIDIQGSRNFLKKLKRGRKP--GKPKFNRALDCGAGIGRVTKGLLLPVFD 79 (218)
T ss_dssp HCHHHHHHHHHHHTS-SSHHHHTTT-GGGHHHHHHHHHHHHHCCCT-----------SEEEEET-TTTHHHHHTCCCC-S
T ss_pred cccHHHHHHHHHcCCCCCccccccCCCCCChHHHHHHHHHHHHHHhhccc--CCCCcceEEecccccchhHHHHHHHhcC
Confidence 35799999999999999999999999999999999999999987654321 1345679999999999999999888899
Q ss_pred cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCC
Q 023787 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKP 261 (277)
Q Consensus 182 ~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~Lkp 261 (277)
+|+.||+++.+++.|++.+.... ....++++..++++.+++++||+||+.|++.|++++|+..+|++|...|+|
T Consensus 80 ~VDlVEp~~~Fl~~a~~~l~~~~------~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~ 153 (218)
T PF05891_consen 80 EVDLVEPVEKFLEQAKEYLGKDN------PRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKP 153 (218)
T ss_dssp EEEEEES-HHHHHHHHHHTCCGG------CCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEE
T ss_pred EeEEeccCHHHHHHHHHHhcccC------CCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcC
Confidence 99999999999999998876521 356889999999998877899999999999999999999999999999999
Q ss_pred CcEEEEEecCCCCCC
Q 023787 262 GGFFVLKENIARSDI 276 (277)
Q Consensus 262 GG~lii~e~~~~~~~ 276 (277)
||++++.||++..++
T Consensus 154 ~G~IvvKEN~~~~~~ 168 (218)
T PF05891_consen 154 NGVIVVKENVSSSGF 168 (218)
T ss_dssp EEEEEEEEEEESSSE
T ss_pred CcEEEEEecCCCCCC
Confidence 999999999987663
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.91 E-value=5.3e-24 Score=179.72 Aligned_cols=139 Identities=19% Similarity=0.214 Sum_probs=112.4
Q ss_pred cCCCCcccccccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCC
Q 023787 125 GGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPE 203 (277)
Q Consensus 125 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~ 203 (277)
..|+.+++...-+....+.+.+...+. ..++.+|||+|||||.++..+++.... +|+++|+|+.||+.|+++....
T Consensus 22 ~~YD~~n~~~S~g~~~~Wr~~~i~~~~---~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~ 98 (238)
T COG2226 22 KKYDLMNDLMSFGLHRLWRRALISLLG---IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKK 98 (238)
T ss_pred HHHHhhcccccCcchHHHHHHHHHhhC---CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhcc
Confidence 334444433334444445554444443 347899999999999999999877533 8999999999999999999875
Q ss_pred CCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 023787 204 NHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (277)
Q Consensus 204 ~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (277)
+. .+++|+++|++++|+++++||+|.+++.|++++ |...+|++++|+|||||++++.|...+.
T Consensus 99 ~~------~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~--d~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 99 GV------QNVEFVVGDAENLPFPDNSFDAVTISFGLRNVT--DIDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred Cc------cceEEEEechhhCCCCCCccCEEEeeehhhcCC--CHHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 54 339999999999999999999999999999999 7779999999999999999999976543
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.89 E-value=1.1e-23 Score=179.26 Aligned_cols=146 Identities=19% Similarity=0.216 Sum_probs=88.8
Q ss_pred ccccccccCCCCcccccccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHH
Q 023787 118 ASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDA 195 (277)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ 195 (277)
..|+.+...|+.+++....+....+...+.+.+. ..++.+|||+|||||.++..+++... .+|+++|+|+.|++.
T Consensus 11 ~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~---~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~ 87 (233)
T PF01209_consen 11 KMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLG---LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEV 87 (233)
T ss_dssp --------------------------SHHHHHHT-----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHH
T ss_pred HHHHHHHHHhCCCccccCCcHHHHHHHHHHhccC---CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHH
Confidence 3444445555554443322323333333322222 45778999999999999998886643 289999999999999
Q ss_pred HHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 023787 196 ARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (277)
Q Consensus 196 a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (277)
|+++....+. .+++++++|++++++++++||+|++++.+++++ |...++++++|+|||||++++.|...+.
T Consensus 88 a~~k~~~~~~------~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~--d~~~~l~E~~RVLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 88 ARKKLKREGL------QNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFP--DRERALREMYRVLKPGGRLVILEFSKPR 158 (233)
T ss_dssp HHHHHHHTT--------SEEEEE-BTTB--S-TT-EEEEEEES-GGG-S--SHHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred HHHHHHhhCC------CCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhC--CHHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence 9999876443 479999999999999999999999999999999 6779999999999999999999976654
No 4
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.86 E-value=6.6e-21 Score=168.96 Aligned_cols=154 Identities=17% Similarity=0.211 Sum_probs=109.4
Q ss_pred hHHHHHhhhcccccccccccccCCCCcccccccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcE
Q 023787 104 QWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEV 183 (277)
Q Consensus 104 ~~y~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v 183 (277)
.+.+.+..||+.... +..+..++..........+...+..........++.+|||||||+|.++..+++.+. +|
T Consensus 83 ~f~~~a~~WW~~~g~-----~~~lh~~N~~R~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~La~~g~-~V 156 (322)
T PLN02396 83 KFSAIADTWWHSEGP-----FKPLHQMNPTRLAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPLARMGA-TV 156 (322)
T ss_pred HHHHHHHHhcCCCCC-----chHHHHhChHHHHHHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHHHHcCC-EE
Confidence 444556688875321 112222333333333334433332111101123567999999999999998886655 69
Q ss_pred EEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCc
Q 023787 184 DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGG 263 (277)
Q Consensus 184 ~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG 263 (277)
+|+|+|+.|++.|+++....+. ..++.+++++++++++++++||+|++..+++|++ +...+++++.++|||||
T Consensus 157 ~GID~s~~~i~~Ar~~~~~~~~-----~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv~--d~~~~L~~l~r~LkPGG 229 (322)
T PLN02396 157 TGVDAVDKNVKIARLHADMDPV-----TSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHVA--NPAEFCKSLSALTIPNG 229 (322)
T ss_pred EEEeCCHHHHHHHHHHHHhcCc-----ccceeEEecCHHHhhhccCCCCEEEEhhHHHhcC--CHHHHHHHHHHHcCCCc
Confidence 9999999999999988654322 2468999999988887778999999999999999 56699999999999999
Q ss_pred EEEEEec
Q 023787 264 FFVLKEN 270 (277)
Q Consensus 264 ~lii~e~ 270 (277)
.+++...
T Consensus 230 ~liist~ 236 (322)
T PLN02396 230 ATVLSTI 236 (322)
T ss_pred EEEEEEC
Confidence 9999864
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.85 E-value=6.1e-21 Score=165.49 Aligned_cols=115 Identities=17% Similarity=0.106 Sum_probs=96.0
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||+|||+|.++..+++.. + .+|+|+|+|+.|++.|+++...... ....+++++++|++++++++++||
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~---~~~~~i~~~~~d~~~lp~~~~sfD 147 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK---SCYKNIEWIEGDATDLPFDDCYFD 147 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh---ccCCCeEEEEcccccCCCCCCCEe
Confidence 4467899999999999999887663 3 2799999999999999887532100 002468999999999999889999
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (277)
+|++++++||++ +...++++++|+|||||++++.|...++
T Consensus 148 ~V~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 148 AITMGYGLRNVV--DRLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred EEEEecccccCC--CHHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 999999999998 6779999999999999999999876543
No 6
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.84 E-value=2.4e-20 Score=136.10 Aligned_cols=95 Identities=27% Similarity=0.378 Sum_probs=82.9
Q ss_pred EEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchhhh
Q 023787 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIG 241 (277)
Q Consensus 162 LDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~ 241 (277)
||+|||+|..+..+++....+|+++|+|+.+++.++++... .++.+...|++++++++++||+|++..+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~---------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN---------EGVSFRQGDAEDLPFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT---------STEEEEESBTTSSSS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc---------cCchheeehHHhCcccccccccccccccee
Confidence 89999999999999877455899999999999999999875 345599999999999999999999999999
Q ss_pred cCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 242 HLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 242 ~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
|++ +...+++++.|+|||||+++|
T Consensus 72 ~~~--~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 HLE--DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GSS--HHHHHHHHHHHHEEEEEEEEE
T ss_pred ecc--CHHHHHHHHHHHcCcCeEEeC
Confidence 996 788999999999999999986
No 7
>PLN02244 tocopherol O-methyltransferase
Probab=99.82 E-value=1.7e-19 Score=162.15 Aligned_cols=109 Identities=19% Similarity=0.251 Sum_probs=96.6
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||||||+|..+..+++.+..+|+|+|+|+.|++.++++....++ ..++.|+++|+.++++++++||+|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~-----~~~v~~~~~D~~~~~~~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGL-----SDKVSFQVADALNQPFEDGQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEEcCcccCCCCCCCccEEE
Confidence 56789999999999999998877555799999999999999998766544 3568999999999998889999999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+..+++|++ +...+++++.++|||||+|++.+.+
T Consensus 192 s~~~~~h~~--d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 192 SMESGEHMP--DKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred ECCchhccC--CHHHHHHHHHHHcCCCcEEEEEEec
Confidence 999999998 6679999999999999999998754
No 8
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.82 E-value=5.8e-20 Score=152.98 Aligned_cols=139 Identities=17% Similarity=0.247 Sum_probs=116.1
Q ss_pred CCCcccccccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCC-------CcEEEEeCCHHHHHHHHHH
Q 023787 127 FGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-------NEVDLLEPVSHFLDAARES 199 (277)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~-------~~v~gvD~S~~~l~~a~~~ 199 (277)
|+.+++....+.+..+.+.+...+. +..+.++||++||||..+..+++... .+|+++|+||.||..++++
T Consensus 73 YD~mND~mSlGiHRlWKd~~v~~L~---p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqR 149 (296)
T KOG1540|consen 73 YDIMNDAMSLGIHRLWKDMFVSKLG---PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQR 149 (296)
T ss_pred HHHHHHHhhcchhHHHHHHhhhccC---CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHH
Confidence 4445666666677777777776666 67789999999999999999987633 3899999999999999999
Q ss_pred hCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 200 LAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
....++. ...++.|+++|++++|+++++||..++.+.+.+++ ++++.+++++|+|||||+|.+.|-...
T Consensus 150 a~~~~l~---~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~t--h~~k~l~EAYRVLKpGGrf~cLeFskv 218 (296)
T KOG1540|consen 150 AKKRPLK---ASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVT--HIQKALREAYRVLKPGGRFSCLEFSKV 218 (296)
T ss_pred HhhcCCC---cCCceEEEeCCcccCCCCCCcceeEEEecceecCC--CHHHHHHHHHHhcCCCcEEEEEEcccc
Confidence 8665442 12358999999999999999999999999999999 777999999999999999999886543
No 9
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.81 E-value=6.1e-19 Score=153.16 Aligned_cols=110 Identities=22% Similarity=0.287 Sum_probs=96.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|..+..++.....+|+++|+|+.|++.|+++... ..++.+.+.|+.+.++++++||+|
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--------~~~i~~~~~D~~~~~~~~~~FD~V 121 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--------KNKIEFEANDILKKDFPENTFDMI 121 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--------CCceEEEECCcccCCCCCCCeEEE
Confidence 457789999999999999988765444799999999999999998754 246889999998888888899999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
++..+++|++..+...++++++++|||||+|+++|.+.
T Consensus 122 ~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 122 YSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred EEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 99999999987788899999999999999999998754
No 10
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.80 E-value=3.7e-19 Score=134.39 Aligned_cols=108 Identities=24% Similarity=0.214 Sum_probs=87.3
Q ss_pred CCccEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCC-CCCCCCCCceeEE
Q 023787 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFTPETGRYDVI 234 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~V 234 (277)
|+.+|||+|||+|..+..+++. ...+|+++|+|+.|++.|+++....+. ..++++++.|+ ...... +.||+|
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~i~~~~~d~~~~~~~~-~~~D~v 74 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL-----SDRITFVQGDAEFDPDFL-EPFDLV 74 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT-----TTTEEEEESCCHGGTTTS-SCEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEECccccCcccC-CCCCEE
Confidence 4679999999999999999983 333799999999999999999833222 57899999999 333333 579999
Q ss_pred ecch-hhhcCC-hhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 235 WVQW-CIGHLT-DDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 235 i~~~-~l~~~~-~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++.+ +++++. .++...+++++.+.|+|||++++.++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 75 ICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp EECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred EECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 9999 666444 35778999999999999999999763
No 11
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.80 E-value=1.6e-19 Score=150.30 Aligned_cols=105 Identities=21% Similarity=0.298 Sum_probs=92.8
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||.|.++..+++.++ .|+|+|+|+.+++.|+.+....++ .+++.+...+++....++||+|+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv-------~i~y~~~~~edl~~~~~~FDvV~c 130 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGV-------NIDYRQATVEDLASAGGQFDVVTC 130 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccc-------cccchhhhHHHHHhcCCCccEEEE
Confidence 678999999999999999998886 499999999999999999887643 477888888877655589999999
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
..+++|++ +...+++.|.+++||||.++++...
T Consensus 131 mEVlEHv~--dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 131 MEVLEHVP--DPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred hhHHHccC--CHHHHHHHHHHHcCCCcEEEEeccc
Confidence 99999999 5558999999999999999998653
No 12
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.80 E-value=6.7e-19 Score=146.60 Aligned_cols=105 Identities=23% Similarity=0.284 Sum_probs=91.0
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||+|..+..+++++. +|+++|+|+.|++.++++....++ .++++.+.|+.+++++ ++||+|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~------~~v~~~~~d~~~~~~~-~~fD~I~~ 101 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENL------DNLHTAVVDLNNLTFD-GEYDFILS 101 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCC------CcceEEecChhhCCcC-CCcCEEEE
Confidence 567999999999999999998766 599999999999999988766443 3478888898877665 57999999
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+.++||+++++...+++++.++|||||++++.+
T Consensus 102 ~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 102 TVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred ecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 999999988889999999999999999976654
No 13
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.79 E-value=2.8e-19 Score=149.82 Aligned_cols=108 Identities=18% Similarity=0.252 Sum_probs=90.9
Q ss_pred CccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecc
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~ 237 (277)
+.+|||+|||+|.++..|++.+. .|+|+|+|+.|++.|+++.......+.....+++|.+.+++... +.||.|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 57899999999999999997776 59999999999999999965544433333345778888888765 569999999
Q ss_pred hhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
.+++|+. |+..++..+.+.|||||.++++...
T Consensus 166 evleHV~--dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 166 EVLEHVK--DPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred HHHHHHh--CHHHHHHHHHHHhCCCCceEeeehh
Confidence 9999998 7779999999999999999998653
No 14
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.79 E-value=7.9e-19 Score=149.64 Aligned_cols=111 Identities=15% Similarity=0.189 Sum_probs=95.3
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||+|||+|.++..+++.. . .+|+|+|+|+.|++.+++++...+. .+++++++|..++++++++||
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~fD 116 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL------HNVELVHGNAMELPFDDNSFD 116 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC------CceEEEEechhcCCCCCCCcc
Confidence 4567899999999999999888764 3 2799999999999999998865432 468899999988887778999
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
+|++..++++++ +...+++++.++|+|||++++.|...+
T Consensus 117 ~V~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 155 (231)
T TIGR02752 117 YVTIGFGLRNVP--DYMQVLREMYRVVKPGGKVVCLETSQP 155 (231)
T ss_pred EEEEecccccCC--CHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 999999999998 667999999999999999999886543
No 15
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.79 E-value=1.6e-18 Score=149.23 Aligned_cols=110 Identities=15% Similarity=0.251 Sum_probs=94.3
Q ss_pred CCccEEEeeccccHHHHHHHHh--CC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 157 QHLVALDCGSGIGRITKNLLIR--YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~--~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
++.+|||+|||+|..+..+++. .+ .+++++|+|+.|++.|++++...+. ..+++++++|+.+++++ .+|+
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~-----~~~v~~~~~d~~~~~~~--~~D~ 128 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----PTPVDVIEGDIRDIAIE--NASM 128 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEeCChhhCCCC--CCCE
Confidence 5689999999999999888763 22 2799999999999999999876443 34689999999887754 5999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
|+++.++||+++++...++++++++|||||.|+++|.+..
T Consensus 129 vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~ 168 (247)
T PRK15451 129 VVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSF 168 (247)
T ss_pred EehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 9999999999977788999999999999999999997643
No 16
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.79 E-value=1.1e-18 Score=151.61 Aligned_cols=126 Identities=21% Similarity=0.275 Sum_probs=97.0
Q ss_pred ccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcce
Q 023787 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214 (277)
Q Consensus 135 ~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~ 214 (277)
+..........+.+.+. ..++.+|||||||+|.++..+++++..+|+|+++|+.+.+.+++++...|+ ..++
T Consensus 43 Le~AQ~~k~~~~~~~~~---l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl-----~~~v 114 (273)
T PF02353_consen 43 LEEAQERKLDLLCEKLG---LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGL-----EDRV 114 (273)
T ss_dssp HHHHHHHHHHHHHTTTT-----TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTS-----SSTE
T ss_pred HHHHHHHHHHHHHHHhC---CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCC-----CCce
Confidence 44444444444444444 789999999999999999999998545799999999999999999988776 4678
Q ss_pred eEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 215 NFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 215 ~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
++...|..+++ .+||.|++..+++|++.+++..+++++.++|||||++++...+
T Consensus 115 ~v~~~D~~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 115 EVRLQDYRDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp EEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred EEEEeeccccC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 88999988765 4899999999999999889999999999999999999987554
No 17
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.79 E-value=2.1e-18 Score=148.37 Aligned_cols=112 Identities=21% Similarity=0.259 Sum_probs=100.5
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|.++.++++++..+|+|+++|+++.+.+++++...|+ ..++++...|..++. +.||-|
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl-----~~~v~v~l~d~rd~~---e~fDrI 141 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGL-----EDNVEVRLQDYRDFE---EPFDRI 141 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCC-----CcccEEEeccccccc---ccccee
Confidence 789999999999999999999988756899999999999999999988776 457888888888875 459999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (277)
+|..+++|+..+....+|+.+++.|+|||.+++.....++
T Consensus 142 vSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 142 VSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred eehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 9999999999888999999999999999999998765543
No 18
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.78 E-value=2e-18 Score=137.87 Aligned_cols=106 Identities=20% Similarity=0.298 Sum_probs=91.5
Q ss_pred CCccEEEeeccccHHHHHHHHh-CC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCcee
Q 023787 157 QHLVALDCGSGIGRITKNLLIR-YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~-~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD 232 (277)
++.+|||+|||+|.++..++.. ++ .+++|+|+|+.|++.|++++...++ .+++|++.|+.+++ ++ +.||
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~------~ni~~~~~d~~~l~~~~~-~~~D 75 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL------DNIEFIQGDIEDLPQELE-EKFD 75 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS------TTEEEEESBTTCGCGCSS-TTEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc------cccceEEeehhccccccC-CCee
Confidence 5689999999999999999854 32 3899999999999999998766543 47999999999976 44 7999
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+|++..+++|++ +...+++++.+.|++||.+++.+..
T Consensus 76 ~I~~~~~l~~~~--~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 76 IIISNGVLHHFP--DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEESTGGGTS--HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEEcCchhhcc--CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 999999999999 6669999999999999999998764
No 19
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.77 E-value=4.3e-18 Score=145.97 Aligned_cols=111 Identities=14% Similarity=0.265 Sum_probs=94.8
Q ss_pred CCCccEEEeeccccHHHHHHHHhC--C-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY--F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~--~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
.++.+|||+|||+|..+..+++.. + .+++|+|+|+.|++.|++++...+. ..+++++++|+.+++++ .+|
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~--~~d 124 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----EIPVEILCNDIRHVEIK--NAS 124 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEECChhhCCCC--CCC
Confidence 366799999999999999888753 2 2799999999999999998765322 24688999999988765 589
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
+|+++.++||+++++...++++++++|||||.++++|++..
T Consensus 125 ~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~ 165 (239)
T TIGR00740 125 MVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF 165 (239)
T ss_pred EEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccC
Confidence 99999999999988888999999999999999999998653
No 20
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.76 E-value=6.4e-18 Score=140.46 Aligned_cols=105 Identities=17% Similarity=0.220 Sum_probs=88.2
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||+|..+..+++++. +|+++|+|+.|++.++++....++ .+.+...|+...+++ ++||+|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~-------~v~~~~~d~~~~~~~-~~fD~I~~ 100 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENL-------PLRTDAYDINAAALN-EDYDFIFS 100 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCC-------CceeEeccchhcccc-CCCCEEEE
Confidence 457999999999999999988766 599999999999999988765432 256677777665554 58999999
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+.++||++.++...++++++++|||||++++.+.
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 101 TVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred ecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 9999999877888999999999999999776643
No 21
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.75 E-value=1.5e-18 Score=128.88 Aligned_cols=96 Identities=24% Similarity=0.469 Sum_probs=81.9
Q ss_pred EEEeeccccHHHHHHHHhC---C-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 161 ALDCGSGIGRITKNLLIRY---F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 161 VLDiGcGtG~~s~~l~~~~---~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
|||+|||+|..+..++... + .+++++|+|+.|++.++++.... ..++++++.|+.+++..+++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~-------~~~~~~~~~D~~~l~~~~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED-------GPKVRFVQADARDLPFSDGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT-------TTTSEEEESCTTCHHHHSSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc-------CCceEEEECCHhHCcccCCCeeEEEE
Confidence 7999999999999998775 2 48999999999999999998653 23689999999998877789999999
Q ss_pred ch-hhhcCChhhHHHHHHHHHhcCCCCc
Q 023787 237 QW-CIGHLTDDDFVSFFKRAKVGLKPGG 263 (277)
Q Consensus 237 ~~-~l~~~~~~d~~~~l~~~~r~LkpGG 263 (277)
.. +++|++++++..+++++.++|||||
T Consensus 74 ~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 74 SGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 55 5999999999999999999999998
No 22
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.75 E-value=2.4e-17 Score=142.32 Aligned_cols=102 Identities=18% Similarity=0.348 Sum_probs=88.7
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||+|||+|.++..+...+ .+|+++|+|+.|++.++++... ..++++|++++++++++||+|+
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~~-----------~~~~~~d~~~~~~~~~~fD~V~ 108 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDAA-----------DHYLAGDIESLPLATATFDLAW 108 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCCC-----------CCEEEcCcccCcCCCCcEEEEE
Confidence 356789999999999999887665 4699999999999999987532 4678899999888888999999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
++.++++++ +...++.++.++|+|||.++++...
T Consensus 109 s~~~l~~~~--d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 109 SNLAVQWCG--NLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred ECchhhhcC--CHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 999999988 6779999999999999999998543
No 23
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.75 E-value=8.3e-18 Score=145.56 Aligned_cols=99 Identities=19% Similarity=0.310 Sum_probs=85.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..++.+|||||||+|.++..++...+. +|+|+|+|+.|++.|+++ ++++.++|+.++. ++++||+
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------------~~~~~~~d~~~~~-~~~~fD~ 92 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------------GVDARTGDVRDWK-PKPDTDV 92 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------------CCcEEEcChhhCC-CCCCceE
Confidence 456789999999999999999877543 799999999999999763 3678889988774 4579999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
|+++.++||++ +...++++++++|||||++++..
T Consensus 93 v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 93 VVSNAALQWVP--EHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred EEEehhhhhCC--CHHHHHHHHHHhCCCCcEEEEEc
Confidence 99999999998 66799999999999999999863
No 24
>PRK05785 hypothetical protein; Provisional
Probab=99.74 E-value=3.8e-18 Score=144.90 Aligned_cols=90 Identities=10% Similarity=0.098 Sum_probs=78.8
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||||..+..+++....+|+|+|+|++|++.|+++. .++++|++++++++++||+|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~--------------~~~~~d~~~lp~~d~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD--------------DKVVGSFEALPFRDKSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc--------------ceEEechhhCCCCCCCEEEEEe
Confidence 46799999999999999888774347999999999999998641 2467899999998899999999
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCC
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPG 262 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpG 262 (277)
.+++||++ +...++++++|+|||.
T Consensus 117 ~~~l~~~~--d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 117 SFALHASD--NIEKVIAEFTRVSRKQ 140 (226)
T ss_pred cChhhccC--CHHHHHHHHHHHhcCc
Confidence 99999998 6779999999999994
No 25
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.74 E-value=7.2e-18 Score=145.93 Aligned_cols=105 Identities=21% Similarity=0.252 Sum_probs=90.7
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~Vi 235 (277)
++.+|||+|||+|..+..++..+. +|+++|+|+.|++.|+++....++ ..+++++++|+.++. ..+++||+|+
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~-----~~~v~~~~~d~~~l~~~~~~~fD~V~ 117 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGV-----SDNMQFIHCAAQDIAQHLETPVDLIL 117 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC-----ccceEEEEcCHHHHhhhcCCCCCEEE
Confidence 567999999999999999987765 699999999999999999876544 356889999987764 4457999999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+..+++|++ +...+++++.++|||||++++..
T Consensus 118 ~~~vl~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 118 FHAVLEWVA--DPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred ehhHHHhhC--CHHHHHHHHHHHcCCCeEEEEEE
Confidence 999999998 55699999999999999998864
No 26
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.73 E-value=7.1e-17 Score=134.94 Aligned_cols=104 Identities=15% Similarity=0.181 Sum_probs=88.0
Q ss_pred CCCccEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
.++.+|||+|||+|..+..+.... ..+++|+|+|+.|++.|+++.. ++.+.++|+.+ ++++++||+|
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~-----------~~~~~~~d~~~-~~~~~sfD~V 109 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP-----------NINIIQGSLFD-PFKDNFFDLV 109 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC-----------CCcEEEeeccC-CCCCCCEEEE
Confidence 356789999999999999888763 3479999999999999998753 25677888877 6777899999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
+++.+++|++++++..+++++.|++ ++.+++.|...+
T Consensus 110 ~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 110 LTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred EECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 9999999999888999999999998 578888886543
No 27
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.72 E-value=4.1e-17 Score=143.53 Aligned_cols=104 Identities=21% Similarity=0.245 Sum_probs=89.4
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||+|..+..++..+. +|+++|+|+.|++.++++....+ .++++...|+..... +++||+|++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~-------l~v~~~~~D~~~~~~-~~~fD~I~~ 190 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKEN-------LNIRTGLYDINSASI-QEEYDFILS 190 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC-------CceEEEEechhcccc-cCCccEEEE
Confidence 346999999999999999988776 59999999999999998876543 257777888877655 478999999
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
..++||+++++...+++++.++|+|||++++.+
T Consensus 191 ~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 191 TVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999999998889999999999999999977754
No 28
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.72 E-value=6.1e-17 Score=144.35 Aligned_cols=107 Identities=19% Similarity=0.201 Sum_probs=89.1
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||||||+|.++..++..++..|+|+|+|+.|+..++......+. ..++.+..++++++++ +++||+|+
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~-----~~~i~~~~~d~e~lp~-~~~FD~V~ 194 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGN-----DQRAHLLPLGIEQLPA-LKAFDTVF 194 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCC-----CCCeEEEeCCHHHCCC-cCCcCEEE
Confidence 35689999999999999999988877899999999999865433211110 2468999999999887 67999999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
|..+++|.. +...+++++++.|+|||.+++.+.
T Consensus 195 s~~vl~H~~--dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 195 SMGVLYHRR--SPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred ECChhhccC--CHHHHHHHHHHhcCCCcEEEEEEE
Confidence 999999988 667999999999999999998654
No 29
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.72 E-value=4.4e-17 Score=133.52 Aligned_cols=106 Identities=23% Similarity=0.224 Sum_probs=88.6
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.++||+|||.|+.+.+|+++|+. |+++|.|+..++.+++.....++ .++..+.|+.+..++ +.||+|+
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~G~~-VtAvD~s~~al~~l~~~a~~~~l-------~i~~~~~Dl~~~~~~-~~yD~I~ 99 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQGFD-VTAVDISPVALEKLQRLAEEEGL-------DIRTRVADLNDFDFP-EEYDFIV 99 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHTT-E-EEEEESSHHHHHHHHHHHHHTT--------TEEEEE-BGCCBS-T-TTEEEEE
T ss_pred cCCCcEEEcCCCCcHHHHHHHHCCCe-EEEEECCHHHHHHHHHHHhhcCc-------eeEEEEecchhcccc-CCcCEEE
Confidence 35689999999999999999999996 99999999999999887765433 488899999988876 6899999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+..+++|++.+.+..+++.+...++|||++++...
T Consensus 100 st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 100 STVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp EESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 99999999999999999999999999999888543
No 30
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.72 E-value=1.2e-16 Score=134.32 Aligned_cols=126 Identities=12% Similarity=-0.026 Sum_probs=94.9
Q ss_pred hHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCC------CCCCCC
Q 023787 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH------MAPDMH 211 (277)
Q Consensus 138 ~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~------~~~~~~ 211 (277)
...++...+.... ..++.+|||+|||.|..+..|++++.. |+|+|+|+.+++.+.+....... ......
T Consensus 19 p~~~l~~~~~~l~----~~~~~rvLd~GCG~G~da~~LA~~G~~-V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~ 93 (213)
T TIGR03840 19 VNPLLVKHWPALG----LPAGARVFVPLCGKSLDLAWLAEQGHR-VLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRA 93 (213)
T ss_pred CCHHHHHHHHhhC----CCCCCeEEEeCCCchhHHHHHHhCCCe-EEEEeCCHHHHHHHHHHcCCCcceeccccceeeec
Confidence 3445555544321 235679999999999999999988886 99999999999987543221100 000113
Q ss_pred cceeEEEcCCCCCCCC-CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 212 KATNFFCVPLQDFTPE-TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 212 ~~~~~~~~d~~~~~~~-~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.+++++++|+.++... .+.||.|+-..+++|++.+....+++.+.++|||||++++.
T Consensus 94 ~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 94 GNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred CceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 4689999999987643 35799999999999999989999999999999999976554
No 31
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.72 E-value=7.6e-17 Score=140.83 Aligned_cols=110 Identities=24% Similarity=0.187 Sum_probs=93.3
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||+|||+|..+..++... .. +|+++|+|+.|++.|+++....+. .++++..+|+.++++++++||
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~------~~v~~~~~d~~~l~~~~~~fD 148 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY------TNVEFRLGEIEALPVADNSVD 148 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC------CCEEEEEcchhhCCCCCCcee
Confidence 4577899999999999887666553 32 699999999999999998765443 467899999998888778999
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
+|+++.++++.+ +...+++++.++|||||+|++++...
T Consensus 149 ~Vi~~~v~~~~~--d~~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 149 VIISNCVINLSP--DKERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred EEEEcCcccCCC--CHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 999999999988 66689999999999999999987653
No 32
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.71 E-value=9.3e-17 Score=139.18 Aligned_cols=100 Identities=23% Similarity=0.394 Sum_probs=86.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..++.+|||||||+|.++..++...+ .+|+|+|+|+.|++.|+++.. ++.++..|+.++.. +.+||+
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~-----------~~~~~~~d~~~~~~-~~~fD~ 96 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP-----------DCQFVEADIASWQP-PQALDL 96 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC-----------CCeEEECchhccCC-CCCccE
Confidence 45678999999999999998987754 389999999999999998753 37788889887654 359999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
|+++.++||++ +...+++++.++|||||.+++.
T Consensus 97 v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 97 IFANASLQWLP--DHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred EEEccChhhCC--CHHHHHHHHHHhcCCCcEEEEE
Confidence 99999999998 6669999999999999999986
No 33
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.71 E-value=1e-16 Score=150.59 Aligned_cols=109 Identities=21% Similarity=0.205 Sum_probs=94.3
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++.... ..++.|.+.|+...++++++||+|
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~-------~~~v~~~~~d~~~~~~~~~~fD~I 336 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR-------KCSVEFEVADCTKKTYPDNSFDVI 336 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC-------CCceEEEEcCcccCCCCCCCEEEE
Confidence 3467899999999999999888765447999999999999999876532 346899999999888777899999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
+|..+++|++ +...++++++++|||||++++.+.+.
T Consensus 337 ~s~~~l~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 337 YSRDTILHIQ--DKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred EECCcccccC--CHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 9999999998 66799999999999999999998654
No 34
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.71 E-value=8.5e-17 Score=136.46 Aligned_cols=104 Identities=22% Similarity=0.242 Sum_probs=90.8
Q ss_pred cEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecch
Q 023787 160 VALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (277)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~ 238 (277)
+|||||||+|..+..+++.++ .+|+|+|+|+.+++.+++++...++ ..++.+...|+...+++ ++||+|++..
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl-----~~~i~~~~~d~~~~~~~-~~fD~I~~~~ 75 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL-----QGRIRIFYRDSAKDPFP-DTYDLVFGFE 75 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC-----CcceEEEecccccCCCC-CCCCEeehHH
Confidence 799999999999998987764 3799999999999999999876554 45788999998766554 5899999999
Q ss_pred hhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 239 ~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+++|++ +...++++++++|||||++++.+..
T Consensus 76 ~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 76 VIHHIK--DKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred HHHhCC--CHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 999998 6779999999999999999998864
No 35
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.70 E-value=1.8e-16 Score=140.14 Aligned_cols=105 Identities=18% Similarity=0.137 Sum_probs=86.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHH---HhCCCCCCCCCCCcceeEEEcCCCCCCCCCCce
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE---SLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 231 (277)
..++.+|||||||+|.++..++..++..|+|+|+|+.|+..++. .... ..++.+...++++++.. .+|
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~--------~~~v~~~~~~ie~lp~~-~~F 189 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDN--------DKRAILEPLGIEQLHEL-YAF 189 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhcc--------CCCeEEEECCHHHCCCC-CCc
Confidence 34678999999999999998888877789999999999986533 2222 24577888888888754 489
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
|+|+|..+++|.+ +...+|++++++|||||.|++.+.
T Consensus 190 D~V~s~gvL~H~~--dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 190 DTVFSMGVLYHRK--SPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred CEEEEcchhhccC--CHHHHHHHHHHhcCCCCEEEEEEE
Confidence 9999999999998 667999999999999999998754
No 36
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.69 E-value=3.4e-16 Score=133.52 Aligned_cols=102 Identities=25% Similarity=0.397 Sum_probs=90.0
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.+.+|||+|||+|.++..++..++. +++++|+|+.+++.++++.. .++.++.+|+.+.++++++||+|+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----------~~~~~~~~d~~~~~~~~~~fD~vi 103 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----------ENVQFICGDAEKLPLEDSSFDLIV 103 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----------CCCeEEecchhhCCCCCCceeEEE
Confidence 4578999999999999999887654 68999999999999998764 247889999999887778999999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++.++||+. +...++.++.++|+|||.+++.+.
T Consensus 104 ~~~~l~~~~--~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 104 SNLALQWCD--DLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred Ehhhhhhcc--CHHHHHHHHHHHcCCCcEEEEEeC
Confidence 999999998 667999999999999999999864
No 37
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.69 E-value=3e-18 Score=126.78 Aligned_cols=95 Identities=27% Similarity=0.433 Sum_probs=62.1
Q ss_pred EEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEc---CCCCCCCCCCceeEEecc
Q 023787 162 LDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV---PLQDFTPETGRYDVIWVQ 237 (277)
Q Consensus 162 LDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~fD~Vi~~ 237 (277)
||||||+|.++..+++.... +++++|+|+.|++.+++++..... .+...... +..+... .++||+|++.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~fD~V~~~ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN------DNFERLRFDVLDLFDYDP-PESFDLVVAS 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---------EEEEE--SSS---CCC-----SEEEEE
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC------cceeEEEeecCChhhccc-ccccceehhh
Confidence 79999999999999988543 899999999999888888765321 22233333 3322222 2599999999
Q ss_pred hhhhcCChhhHHHHHHHHHhcCCCCcEE
Q 023787 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFF 265 (277)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~r~LkpGG~l 265 (277)
.++||++ ++..++++++++|||||+|
T Consensus 74 ~vl~~l~--~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 74 NVLHHLE--DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -TTS--S---HHHHHHHHTTT-TSS-EE
T ss_pred hhHhhhh--hHHHHHHHHHHHcCCCCCC
Confidence 9999996 7889999999999999986
No 38
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.69 E-value=1.9e-16 Score=137.49 Aligned_cols=113 Identities=19% Similarity=0.309 Sum_probs=88.5
Q ss_pred CCCccEEEeeccccH----HHHHHHHhCC------CcEEEEeCCHHHHHHHHHHhCCC----CCC---------------
Q 023787 156 NQHLVALDCGSGIGR----ITKNLLIRYF------NEVDLLEPVSHFLDAARESLAPE----NHM--------------- 206 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~----~s~~l~~~~~------~~v~gvD~S~~~l~~a~~~~~~~----~~~--------------- 206 (277)
.++.+|||+|||||. ++..+++.+. .+|+|+|+|+.|++.|++..-.. ++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 456899999999996 4444444332 27999999999999999854110 000
Q ss_pred --CCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 207 --APDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 207 --~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
......++.|.+.|+.+.+++.++||+|+|.++++|+++++...+++++++.|+|||++++.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 00112468999999999877678999999999999999888889999999999999999996
No 39
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.69 E-value=6.5e-17 Score=130.89 Aligned_cols=111 Identities=22% Similarity=0.308 Sum_probs=92.1
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCccee-EEEcCCCCCC-CCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN-FFCVPLQDFT-PETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~-~~~~~fD 232 (277)
......|||+|||||..-.++--.-..+||++|+++.|-+.+.+.+.+.. ..++. |+.++.++++ .++++||
T Consensus 74 k~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k------~~~~~~fvva~ge~l~~l~d~s~D 147 (252)
T KOG4300|consen 74 KSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK------PLQVERFVVADGENLPQLADGSYD 147 (252)
T ss_pred ccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc------CcceEEEEeechhcCcccccCCee
Confidence 34456789999999998774321122379999999999999999887752 34555 8899999998 7789999
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
.|++..++.-.. +..+.|+++.|+|+|||++++.|++..
T Consensus 148 tVV~TlvLCSve--~~~k~L~e~~rlLRpgG~iifiEHva~ 186 (252)
T KOG4300|consen 148 TVVCTLVLCSVE--DPVKQLNEVRRLLRPGGRIIFIEHVAG 186 (252)
T ss_pred eEEEEEEEeccC--CHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 999999998877 777999999999999999999999864
No 40
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.69 E-value=2.1e-16 Score=140.77 Aligned_cols=105 Identities=23% Similarity=0.175 Sum_probs=90.6
Q ss_pred CCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
.++.+|||+|||+|..+..+++... .+|+++|+|+.|++.|+++... .+++++.+|+.++++++++||+|
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~---------~~i~~i~gD~e~lp~~~~sFDvV 182 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---------KECKIIEGDAEDLPFPTDYADRY 182 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc---------cCCeEEeccHHhCCCCCCceeEE
Confidence 3567999999999999998876643 3799999999999999987542 35788999999988887899999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+++.+++|++ +...++++++++|||||++++.+.+
T Consensus 183 Is~~~L~~~~--d~~~~L~e~~rvLkPGG~LvIi~~~ 217 (340)
T PLN02490 183 VSAGSIEYWP--DPQRGIKEAYRVLKIGGKACLIGPV 217 (340)
T ss_pred EEcChhhhCC--CHHHHHHHHHHhcCCCcEEEEEEec
Confidence 9999999998 5558999999999999999988654
No 41
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.69 E-value=3.4e-16 Score=147.06 Aligned_cols=109 Identities=23% Similarity=0.408 Sum_probs=92.8
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC--CCCCCCceeE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD--FTPETGRYDV 233 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~fD~ 233 (277)
.++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.+++.... ..++.+++.|+.. +++++++||+
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~~--------~~~i~~~~~d~~~~~~~~~~~~fD~ 106 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESINGH--------YKNVKFMCADVTSPDLNISDGSVDL 106 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhcc--------CCceEEEEecccccccCCCCCCEEE
Confidence 355799999999999999988764 4799999999999988764332 3568899999863 4566789999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
|++.++++|++++++..++++++++|||||++++.|++..
T Consensus 107 I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~ 146 (475)
T PLN02336 107 IFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFH 146 (475)
T ss_pred EehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCC
Confidence 9999999999987789999999999999999999998743
No 42
>PRK06922 hypothetical protein; Provisional
Probab=99.68 E-value=3e-16 Score=148.16 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=91.7
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCceeE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~ 233 (277)
++.+|||+|||+|..+..++...+. +|+|+|+|+.|++.|+++.... ..++.++++|+.+++ +++++||+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~-------g~~ie~I~gDa~dLp~~fedeSFDv 490 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE-------GRSWNVIKGDAINLSSSFEKESVDT 490 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc-------CCCeEEEEcchHhCccccCCCCEEE
Confidence 5689999999999999888876544 8999999999999999886542 235778889988876 67789999
Q ss_pred EecchhhhcC-----------ChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 234 IWVQWCIGHL-----------TDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 234 Vi~~~~l~~~-----------~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
|+++.++|++ +.++...++++++++|||||.+++.|.+.
T Consensus 491 VVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~ 540 (677)
T PRK06922 491 IVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM 540 (677)
T ss_pred EEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence 9999999875 23578899999999999999999998753
No 43
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.68 E-value=1.1e-16 Score=128.19 Aligned_cols=98 Identities=28% Similarity=0.380 Sum_probs=79.9
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||||||+|.++..+...++ +++|+|+|+.+++. . +......+......++++||+|+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~fD~i~ 83 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-----R-----------NVVFDNFDAQDPPFPDGSFDLII 83 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-----T-----------TSEEEEEECHTHHCHSSSEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-----h-----------hhhhhhhhhhhhhccccchhhHh
Confidence 4678999999999999998877666 79999999999998 1 12222232233334568999999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
|+.+++|++ +...+++++.++|||||++++.+...
T Consensus 84 ~~~~l~~~~--d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 84 CNDVLEHLP--DPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp EESSGGGSS--HHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hHHHHhhcc--cHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 999999999 67799999999999999999998754
No 44
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.68 E-value=3.1e-16 Score=133.79 Aligned_cols=109 Identities=20% Similarity=0.201 Sum_probs=95.0
Q ss_pred CCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
++.+|||+|||+|..+..++..++ .+++++|+|+.+++.+++++...+. ..++.+...|+.+.+.++++||+|
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~D~I 125 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL-----SGNVEFVQGDAEALPFPDNSFDAV 125 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc-----ccCeEEEecccccCCCCCCCccEE
Confidence 568999999999999999988874 5899999999999999998865433 356889999998887767899999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
++..++++++ +...+++++.++|+|||.+++.|...
T Consensus 126 ~~~~~l~~~~--~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 126 TIAFGLRNVP--DIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred EEecccccCC--CHHHHHHHHHHhccCCcEEEEEEecC
Confidence 9999999988 67799999999999999999987654
No 45
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.68 E-value=6.8e-16 Score=138.40 Aligned_cols=214 Identities=15% Similarity=0.155 Sum_probs=138.6
Q ss_pred CchhhhhhhhhHHHHhhhhhccccCCCCCCcccccccCCCCCCCccccHHHHHHHHhCCCCcchhhh--hhHH-------
Q 023787 36 PTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKK--TQWY------- 106 (277)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~--~~~y------- 106 (277)
.-.-++.+||-+..++.+.+.+... -+....+.+.|....| .+++.++.+...... .....+ ..++
T Consensus 77 ~d~~~~~~pk~k~~~~~~l~~~~~~--l~~g~~i~~~G~~~~g--~~s~~k~~~~~~~~~-~~~~ar~~~l~~~~~~~~~ 151 (342)
T PRK09489 77 CDTLIYYWPKNKQEAQFQLMNLLSL--LPVGTDIFVVGENRSG--VRSAEKMLADYAPLN-KIDSARRCGLYHGRLEKQP 151 (342)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHh--CCCCCEEEEEEecccc--HHHHHHHHHHhcCcc-ccccceeEEEEEEeccccC
Confidence 3445889999999999998877663 2235567888999999 778888777764211 100000 0000
Q ss_pred -HHHhhhcccccccccccccCCCCccc-ccccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCC-cE
Q 023787 107 -REGISYWEGVEASVDGVLGGFGNVNE-VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EV 183 (277)
Q Consensus 107 -~~~~~yW~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v 183 (277)
-...+||..... .+-.+.....+.. ..+......+...+. .....+|||+|||+|.++..+++.++. +|
T Consensus 152 ~~~~~~~~~~y~~-~~l~i~~~pgvFs~~~lD~gt~lLl~~l~-------~~~~g~VLDlGCG~G~ls~~la~~~p~~~v 223 (342)
T PRK09489 152 VFDADKFWKEYQV-DGLTVKTLPGVFSRDGLDVGSQLLLSTLT-------PHTKGKVLDVGCGAGVLSAVLARHSPKIRL 223 (342)
T ss_pred CCcccccceeeec-CCEEEEeCCCCCCCCCCCHHHHHHHHhcc-------ccCCCeEEEeccCcCHHHHHHHHhCCCCEE
Confidence 012345543211 0001111222221 123333344444332 223458999999999999999887664 79
Q ss_pred EEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCC---hhhHHHHHHHHHhcCC
Q 023787 184 DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLT---DDDFVSFFKRAKVGLK 260 (277)
Q Consensus 184 ~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~---~~d~~~~l~~~~r~Lk 260 (277)
+++|+|+.|++.+++++..+++ ..++...|.... .+++||+|+++..+|+.. ......+++++.+.||
T Consensus 224 ~~vDis~~Al~~A~~nl~~n~l-------~~~~~~~D~~~~--~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~Lk 294 (342)
T PRK09489 224 TLSDVSAAALESSRATLAANGL-------EGEVFASNVFSD--IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLN 294 (342)
T ss_pred EEEECCHHHHHHHHHHHHHcCC-------CCEEEEcccccc--cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcC
Confidence 9999999999999999877543 245666676542 247899999999998632 2346789999999999
Q ss_pred CCcEEEEEecC
Q 023787 261 PGGFFVLKENI 271 (277)
Q Consensus 261 pGG~lii~e~~ 271 (277)
|||.++++-|.
T Consensus 295 pgG~L~iVan~ 305 (342)
T PRK09489 295 SGGELRIVANA 305 (342)
T ss_pred cCCEEEEEEeC
Confidence 99999998663
No 46
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.67 E-value=7.2e-16 Score=130.19 Aligned_cols=107 Identities=20% Similarity=0.253 Sum_probs=93.7
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
.++.+|||+|||+|..+..+++.++. +++++|+++.+++.++++... ..++++..+|+.+.++++++||+
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~--------~~~i~~~~~d~~~~~~~~~~~D~ 109 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL--------PLNIEFIQADAEALPFEDNSFDA 109 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc--------CCCceEEecchhcCCCCCCcEEE
Confidence 36789999999999999999888774 899999999999999998752 35688899999888776679999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
|+++.++++++ +...+++++.+.|+|||++++.+...
T Consensus 110 i~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 110 VTIAFGLRNVT--DIQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred EEEeeeeCCcc--cHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 99999999988 67799999999999999999987643
No 47
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.67 E-value=2.3e-16 Score=128.04 Aligned_cols=104 Identities=28% Similarity=0.425 Sum_probs=84.7
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
..-.++||+|||.|.++..|+.+ ..+++++|+|+..++.|++++.. ..+++|.+.++.++.+ +++||+|+
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~--------~~~V~~~~~dvp~~~P-~~~FDLIV 111 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAG--------LPHVEWIQADVPEFWP-EGRFDLIV 111 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT---------SSEEEEES-TTT----SS-EEEEE
T ss_pred cccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCC--------CCCeEEEECcCCCCCC-CCCeeEEE
Confidence 34578999999999999998755 56899999999999999999987 4789999999988754 48999999
Q ss_pred cchhhhcCCh-hhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 236 VQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 236 ~~~~l~~~~~-~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
++.+++|+.+ +++..++.++...|+|||.+++..
T Consensus 112 ~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 112 LSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp EES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 9999999985 679999999999999999999964
No 48
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.67 E-value=8.7e-16 Score=139.91 Aligned_cols=104 Identities=21% Similarity=0.288 Sum_probs=89.8
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|.++..+++....+|+|+|+|+.|++.|+++... ..+++...|..++ +++||.|
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~---------l~v~~~~~D~~~l---~~~fD~I 232 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG---------LPVEIRLQDYRDL---NGQFDRI 232 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc---------CeEEEEECchhhc---CCCCCEE
Confidence 457789999999999999988876545799999999999999998753 2367777887665 3689999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++..+++|++..++..+++++.++|||||++++.+.
T Consensus 233 vs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 233 VSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred EEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 999999999877888999999999999999999764
No 49
>PRK08317 hypothetical protein; Provisional
Probab=99.67 E-value=1.5e-15 Score=129.44 Aligned_cols=107 Identities=21% Similarity=0.241 Sum_probs=92.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||+|||+|.++..++... + .+++++|+|+.+++.++++.... ..++.+...|+..+++++++||
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~D 89 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-------GPNVEFVRGDADGLPFPDGSFD 89 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-------CCceEEEecccccCCCCCCCce
Confidence 4577899999999999999988775 2 37999999999999999883321 3568899999988887778999
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+|++..+++|++ +...+++++.++|||||.+++.+.
T Consensus 90 ~v~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 90 AVRSDRVLQHLE--DPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred EEEEechhhccC--CHHHHHHHHHHHhcCCcEEEEEec
Confidence 999999999998 667999999999999999999874
No 50
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.67 E-value=2.8e-16 Score=128.18 Aligned_cols=104 Identities=22% Similarity=0.368 Sum_probs=93.1
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
.....+|.|+|||+|..|..|+++++. .++|+|.|+.|++.|++++. +.+|..+|+.++..+ .++|+
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp-----------~~~f~~aDl~~w~p~-~~~dl 95 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP-----------DATFEEADLRTWKPE-QPTDL 95 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC-----------CCceecccHhhcCCC-Cccch
Confidence 456789999999999999999988876 89999999999999998864 488999999999865 58999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE--ecCC
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK--ENIA 272 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~--e~~~ 272 (277)
++++.+|++++ |-..+|.++...|.|||++.+. +|..
T Consensus 96 lfaNAvlqWlp--dH~~ll~rL~~~L~Pgg~LAVQmPdN~d 134 (257)
T COG4106 96 LFANAVLQWLP--DHPELLPRLVSQLAPGGVLAVQMPDNLD 134 (257)
T ss_pred hhhhhhhhhcc--ccHHHHHHHHHhhCCCceEEEECCCccC
Confidence 99999999999 7779999999999999999987 5543
No 51
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.66 E-value=7.1e-16 Score=126.91 Aligned_cols=101 Identities=23% Similarity=0.241 Sum_probs=85.6
Q ss_pred CCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
++.+|||+|||+|..+..++...+ .+|+++|+|+.|++.|+++....++ .+++++++|+.++.. .++||+|+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l------~~i~~~~~d~~~~~~-~~~fDlV~ 117 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL------KNVTVVHGRAEEFGQ-EEKFDVVT 117 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC------CCEEEEeccHhhCCC-CCCccEEE
Confidence 478999999999999998886544 3899999999999999999877654 348999999988776 57999999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+... . ++..+++.+++.|||||++++.+.
T Consensus 118 ~~~~----~--~~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 118 SRAV----A--SLSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred Eccc----c--CHHHHHHHHHHhcCCCeEEEEEeC
Confidence 8752 2 566899999999999999999864
No 52
>PRK06202 hypothetical protein; Provisional
Probab=99.66 E-value=8.3e-16 Score=131.20 Aligned_cols=105 Identities=21% Similarity=0.308 Sum_probs=83.9
Q ss_pred CCCccEEEeeccccHHHHHHHHh----CCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCc
Q 023787 156 NQHLVALDCGSGIGRITKNLLIR----YFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGR 230 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~----~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 230 (277)
.++.+|||+|||+|.++..++.. ++. +|+|+|+|+.|++.|+++... .++.+.+.+...++.++++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~---------~~~~~~~~~~~~l~~~~~~ 129 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR---------PGVTFRQAVSDELVAEGER 129 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc---------CCCeEEEEecccccccCCC
Confidence 45679999999999998887653 332 799999999999999987643 2355666666666556689
Q ss_pred eeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 231 fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
||+|+++.++||+++++...+++++.++++ |.+++.|..
T Consensus 130 fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~ 168 (232)
T PRK06202 130 FDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLI 168 (232)
T ss_pred ccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccc
Confidence 999999999999998778899999999998 566665543
No 53
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.65 E-value=3.2e-15 Score=126.04 Aligned_cols=111 Identities=11% Similarity=-0.030 Sum_probs=88.2
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCC------CCCCCCCcceeEEEcCCCCCCCC-C
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPEN------HMAPDMHKATNFFCVPLQDFTPE-T 228 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~------~~~~~~~~~~~~~~~d~~~~~~~-~ 228 (277)
.++.+|||+|||.|..+..|+++++. |+|||+|+.+++.+.+...... ........++++.++|+.++... .
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~~-V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGHE-VLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCCe-EEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 35679999999999999999988886 9999999999998754321110 00011135788999999988643 2
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
+.||+|+-..+++|++.+....+++.+.++|+|||++++
T Consensus 115 ~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 115 ADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 589999999999999999999999999999999997444
No 54
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.64 E-value=3.4e-15 Score=132.61 Aligned_cols=111 Identities=15% Similarity=0.193 Sum_probs=95.1
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..+..+|||||||+|.++..++++++. +++++|. +.+++.+++++...++ ..+++++.+|+.+.+++ .+|+
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl-----~~rv~~~~~d~~~~~~~--~~D~ 218 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV-----ADRMRGIAVDIYKESYP--EADA 218 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCc-----cceEEEEecCccCCCCC--CCCE
Confidence 456689999999999999999988765 8999997 7999999998877655 45789999998765554 3799
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
|++..++|+.+++....+++++++.|+|||++++.|.+..
T Consensus 219 v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 219 VLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred EEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 9999999999877778899999999999999999997543
No 55
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.63 E-value=1.3e-15 Score=124.88 Aligned_cols=100 Identities=23% Similarity=0.243 Sum_probs=82.0
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
++.+|||+|||+|..+..++..... +|+++|+|+.|++.++++....++ .+++++++|+.++.. .++||+|+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~------~~i~~i~~d~~~~~~-~~~fD~I~ 114 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL------NNVEIVNGRAEDFQH-EEQFDVIT 114 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC------CCeEEEecchhhccc-cCCccEEE
Confidence 3679999999999999988766543 799999999999999988766443 358999999988743 46999999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+.. ++ ++..+++.+.++|+|||.+++..
T Consensus 115 s~~-~~-----~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 115 SRA-LA-----SLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ehh-hh-----CHHHHHHHHHHhcCCCCEEEEEc
Confidence 876 43 34478899999999999999874
No 56
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.63 E-value=4.3e-15 Score=130.07 Aligned_cols=160 Identities=30% Similarity=0.472 Sum_probs=126.9
Q ss_pred hhhhHHHHHhhhcccccccccc-cccCCCCccc---ccccchHHHHHHHHhccCCC-c-CCCCCccEEEeeccccHHHHH
Q 023787 101 KKTQWYREGISYWEGVEASVDG-VLGGFGNVNE---VDIKGSEAFLQMLLSDRFPN-A-RNNQHLVALDCGSGIGRITKN 174 (277)
Q Consensus 101 ~~~~~y~~~~~yW~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~l~~-~-~~~~~~~VLDiGcGtG~~s~~ 174 (277)
....+|+++..||.+...+.+| ++++|...+. .++..+..++..+....+.+ . +...-...+|+|.|+|+.+..
T Consensus 115 ~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ 194 (342)
T KOG3178|consen 115 NTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKN 194 (342)
T ss_pred hhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHH
Confidence 3446789999999999999999 7888887655 67777777777777643321 1 122347899999999999999
Q ss_pred HHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHH
Q 023787 175 LLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKR 254 (277)
Q Consensus 175 l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~ 254 (277)
++. .+.++.++++....+..++..+. .| ++.+-+|+..- .| +-|+||+.|++||.+|+++.++|++
T Consensus 195 ll~-~fp~ik~infdlp~v~~~a~~~~-~g---------V~~v~gdmfq~-~P--~~daI~mkWiLhdwtDedcvkiLkn 260 (342)
T KOG3178|consen 195 LLS-KYPHIKGINFDLPFVLAAAPYLA-PG---------VEHVAGDMFQD-TP--KGDAIWMKWILHDWTDEDCVKILKN 260 (342)
T ss_pred HHH-hCCCCceeecCHHHHHhhhhhhc-CC---------cceeccccccc-CC--CcCeEEEEeecccCChHHHHHHHHH
Confidence 998 55569999999999988888774 21 55566666554 22 3469999999999999999999999
Q ss_pred HHhcCCCCcEEEEEecCCCC
Q 023787 255 AKVGLKPGGFFVLKENIARS 274 (277)
Q Consensus 255 ~~r~LkpGG~lii~e~~~~~ 274 (277)
|+..|+|||.+++.|++.+.
T Consensus 261 C~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 261 CKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred HHHhCCCCCEEEEEeccCCC
Confidence 99999999999999997653
No 57
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.62 E-value=5.6e-15 Score=113.13 Aligned_cols=103 Identities=18% Similarity=0.099 Sum_probs=82.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-CCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD 232 (277)
..++.+|||+|||+|..+..+++..+. +|+++|+|+.+++.++++....+. .+++++..|+... +....+||
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV------SNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC------CceEEEeccccccChhhcCCCC
Confidence 345679999999999999999887553 899999999999999988765433 3577888877653 22235899
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|++....+ ....+++++.+.|||||++++.
T Consensus 91 ~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 91 RVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred EEEECCcch-----hHHHHHHHHHHHcCCCCEEEEE
Confidence 999977543 3458999999999999999985
No 58
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.62 E-value=1.4e-15 Score=127.01 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=85.5
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCC-CCCC--CCCCcee
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFT--PETGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~--~~~~~fD 232 (277)
++.+|||+|||+|..+..++...+. +|+++|+|+.|++.|++++...+. .++.++++|+ ..++ +++++||
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~------~~v~~~~~d~~~~l~~~~~~~~~D 113 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL------TNLRLLCGDAVEVLLDMFPDGSLD 113 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC------CCEEEEecCHHHHHHHHcCccccc
Confidence 5679999999999999998876543 799999999999999998865432 4688999998 6655 5567999
Q ss_pred EEecchhhhcC------ChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 233 VIWVQWCIGHL------TDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 233 ~Vi~~~~l~~~------~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+|++++...+. .......+++++.++|||||.|++..
T Consensus 114 ~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 114 RIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred eEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 99987654322 11124679999999999999999974
No 59
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.61 E-value=7.2e-15 Score=119.50 Aligned_cols=122 Identities=24% Similarity=0.269 Sum_probs=93.8
Q ss_pred ccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcc
Q 023787 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (277)
Q Consensus 135 ~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~ 213 (277)
......++.+.+.. .+..+|||+|||+|.++..++..++. +|+++|+|+.+++.+++++..+++ .+
T Consensus 16 ~d~~t~lL~~~l~~-------~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~------~~ 82 (170)
T PF05175_consen 16 LDAGTRLLLDNLPK-------HKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL------EN 82 (170)
T ss_dssp HHHHHHHHHHHHHH-------HTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC------TT
T ss_pred CCHHHHHHHHHHhh-------ccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc------cc
Confidence 33444555555542 25679999999999999999887776 799999999999999999987654 22
Q ss_pred eeEEEcCCCCCCCCCCceeEEecchhhhcCCh---hhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD---DDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 214 ~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~---~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++++..|+.+... +++||+|+++..++.-.+ .-...+++.+.+.|||||.+++.-+
T Consensus 83 v~~~~~d~~~~~~-~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 83 VEVVQSDLFEALP-DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp EEEEESSTTTTCC-TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccccc-ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 8888888876443 579999999998776553 2367899999999999999987643
No 60
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.61 E-value=5.9e-15 Score=124.84 Aligned_cols=104 Identities=17% Similarity=0.195 Sum_probs=88.5
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||+|||+|.++..++.... +|+|+|+|+.|++.|++++...+. ..++.|.+.|+.+.+ ++||+|+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~-----~~~i~~~~~d~~~~~---~~fD~ii 124 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDV-----AGNVEFEVNDLLSLC---GEFDIVV 124 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECChhhCC---CCcCEEE
Confidence 3578999999999999999887654 699999999999999999865432 236889999988765 6899999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+..+++|++.+++..+++++.+++++++++.+.
T Consensus 125 ~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 125 CMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred EhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 999999998778889999999999988777664
No 61
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=1.6e-14 Score=124.76 Aligned_cols=217 Identities=19% Similarity=0.176 Sum_probs=143.1
Q ss_pred cCchhhhhhhhhHHHHhhhhhccccCCCCCCcccccccCCCCCCCccccHHHHHHHHhCCCCcc--hhhhhhHHH-----
Q 023787 35 KPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQ--QEKKTQWYR----- 107 (277)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~--~~~~~~~y~----- 107 (277)
..-.-|+-|+|-++..+.+.+.+...- +....+.+.|...+| ..+..+|..+........ -+....+|.
T Consensus 37 ~~d~~l~~~pK~~~e~e~qLa~ll~~~--~~g~~i~v~g~~~~g--~~s~~k~l~~~~~~~~~~~a~~~~~~~~~~~~~~ 112 (300)
T COG2813 37 DFDAVLLYWPKHKAEAEFQLAQLLARL--PPGGEIVVVGEKRDG--VRSAEKMLEKYGGPTKTDSARHCMRLHYYSENPP 112 (300)
T ss_pred CCCEEEEEccCchHHHHHHHHHHHhhC--CCCCeEEEEecccch--HHHHHHHHHHhcCccccchHhhcceeEeecCCCC
Confidence 455668889999999999988777643 234567778888898 788888887775432111 111111221
Q ss_pred --HHhhhcccccccccccccCCCCcc-cccccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCC-cE
Q 023787 108 --EGISYWEGVEASVDGVLGGFGNVN-EVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EV 183 (277)
Q Consensus 108 --~~~~yW~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v 183 (277)
....+|.......+..+-+...++ ...+....++|.+.+. .....+|||+|||.|.++..+++..+. ++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~-------~~~~~~vlDlGCG~Gvlg~~la~~~p~~~v 185 (300)
T COG2813 113 PFADEPEWKVYLLGHELTFKTLPGVFSRDKLDKGSRLLLETLP-------PDLGGKVLDLGCGYGVLGLVLAKKSPQAKL 185 (300)
T ss_pred cccchhhhhhhhccCceEEEeCCCCCcCCCcChHHHHHHHhCC-------ccCCCcEEEeCCCccHHHHHHHHhCCCCeE
Confidence 112333332222222222223332 2334555555555554 334459999999999999999988875 89
Q ss_pred EEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCChh---hHHHHHHHHHhcCC
Q 023787 184 DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDD---DFVSFFKRAKVGLK 260 (277)
Q Consensus 184 ~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~---d~~~~l~~~~r~Lk 260 (277)
+.+|+|...++.|++++..++. .+..++..|+.+-. + ++||+|+|+-.||--... -..+++..+.+.|+
T Consensus 186 tmvDvn~~Av~~ar~Nl~~N~~------~~~~v~~s~~~~~v-~-~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~ 257 (300)
T COG2813 186 TLVDVNARAVESARKNLAANGV------ENTEVWASNLYEPV-E-GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLK 257 (300)
T ss_pred EEEecCHHHHHHHHHhHHHcCC------CccEEEEecccccc-c-ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhc
Confidence 9999999999999999988654 22244555554322 2 399999999999843211 13489999999999
Q ss_pred CCcEEEEEec
Q 023787 261 PGGFFVLKEN 270 (277)
Q Consensus 261 pGG~lii~e~ 270 (277)
+||.|.|+-|
T Consensus 258 ~gGeL~iVan 267 (300)
T COG2813 258 PGGELWIVAN 267 (300)
T ss_pred cCCEEEEEEc
Confidence 9999999877
No 62
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.59 E-value=2.6e-14 Score=129.22 Aligned_cols=125 Identities=19% Similarity=0.174 Sum_probs=93.3
Q ss_pred ccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcc
Q 023787 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (277)
Q Consensus 135 ~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~ 213 (277)
+.....++...+. .....+|||+|||+|.++..++++++. +|+++|+|+.|++.|++++..++... ..+
T Consensus 213 LD~GtrllL~~lp-------~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~---~~~ 282 (378)
T PRK15001 213 LDIGARFFMQHLP-------ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEA---LDR 282 (378)
T ss_pred cChHHHHHHHhCC-------cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCccc---Cce
Confidence 4444455554443 223469999999999999999888765 89999999999999999986543210 135
Q ss_pred eeEEEcCCCCCCCCCCceeEEecchhhhcC---ChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHL---TDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 214 ~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~---~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+++...|..... ++++||+|+|+..+|.. ++.....+|+.+.++|+|||.++++-|
T Consensus 283 v~~~~~D~l~~~-~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 283 CEFMINNALSGV-EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred EEEEEccccccC-CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 788888765432 33589999999888753 334467899999999999999999854
No 63
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.59 E-value=1.8e-14 Score=120.69 Aligned_cols=101 Identities=16% Similarity=0.124 Sum_probs=82.4
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||+|||+|..+..+++... .+|+++|+++.+++.|++++...+. ..+++++.+|..+.....++||
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~-----~~~v~~~~~d~~~~~~~~~~fD 144 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY-----WGVVEVYHGDGKRGLEKHAPFD 144 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCcEEEEECCcccCCccCCCcc
Confidence 45678999999999999987776542 3799999999999999998876543 2358889999877554557999
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|++..++++++ .++.+.|+|||++++.
T Consensus 145 ~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 145 AIIVTAAASTIP--------SALVRQLKDGGVLVIP 172 (205)
T ss_pred EEEEccCcchhh--------HHHHHhcCcCcEEEEE
Confidence 999999887766 3577899999999885
No 64
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.58 E-value=1.9e-14 Score=122.37 Aligned_cols=103 Identities=19% Similarity=0.223 Sum_probs=84.5
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||+|||+|.++..++..+. .|+++|+|+.|++.|++++...+. ..++.+..+|+.. .+++||+|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~-----~~~i~~~~~d~~~---~~~~fD~v~ 132 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGL-----AGNITFEVGDLES---LLGRFDTVV 132 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC-----ccCcEEEEcCchh---ccCCcCEEE
Confidence 3567999999999999999987766 499999999999999998865433 2468888888543 347899999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
+..+++|+++++...+++++.+.+++++.+.+
T Consensus 133 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 133 CLDVLIHYPQEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred EcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 99999999988888999999998765555443
No 65
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.58 E-value=7e-15 Score=116.87 Aligned_cols=104 Identities=18% Similarity=0.319 Sum_probs=86.8
Q ss_pred cEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecch
Q 023787 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (277)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~ 238 (277)
+|||+|||.|.+...|++.++. .++|+|+|+.+++.|+...+..++ ...++|.+.|+.+-.+..+.||+|.--.
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~-----~n~I~f~q~DI~~~~~~~~qfdlvlDKG 144 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGF-----SNEIRFQQLDITDPDFLSGQFDLVLDKG 144 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCC-----CcceeEEEeeccCCcccccceeEEeecC
Confidence 9999999999999999999887 599999999999999998888766 3449999999998777678999998655
Q ss_pred hhhcC------ChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 239 CIGHL------TDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 239 ~l~~~------~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
++..+ +...+...+..+.+.|+|||+|+|.
T Consensus 145 T~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvIt 180 (227)
T KOG1271|consen 145 TLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVIT 180 (227)
T ss_pred ceeeeecCCCCcccceeeehhhHhhccCCCcEEEEE
Confidence 44433 2223456789999999999999986
No 66
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.58 E-value=2.4e-14 Score=117.39 Aligned_cols=106 Identities=21% Similarity=0.148 Sum_probs=86.5
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||+|.++..++..+. +|+++|+|+.|++.+++++...+ .++++..+|+.+.. .++||+|++
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~d~~~~~--~~~fD~Vi~ 88 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNN-------VGLDVVMTDLFKGV--RGKFDVILF 88 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcC-------CceEEEEccccccc--CCcccEEEE
Confidence 457899999999999999887776 79999999999999999986532 34778888876643 358999999
Q ss_pred chhhhcCChh-------------------hHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 237 QWCIGHLTDD-------------------DFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 237 ~~~l~~~~~~-------------------d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
+..+++.++. ....+++++.++|||||.+++.+...
T Consensus 89 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 89 NPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred CCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 9888766521 14678999999999999999987654
No 67
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.58 E-value=1.9e-14 Score=127.51 Aligned_cols=104 Identities=14% Similarity=0.169 Sum_probs=80.3
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|+++....+... ....++.|.+.|+.++ +++||+|+|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~-~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAAL-PPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhccccc-ccccceEEEEcchhhc---CCCcCEEEE
Confidence 467999999999999999987765 69999999999999999876431100 0023578888888664 378999999
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEE
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (277)
..+++|++++....+++.+.+ +.+||.++
T Consensus 219 ~~vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 219 LDVLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred cCEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 999999987777778888875 45555544
No 68
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.57 E-value=1.7e-14 Score=126.07 Aligned_cols=94 Identities=17% Similarity=0.139 Sum_probs=78.3
Q ss_pred CCccEEEeeccccHHHHHHHHhCC----CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF----NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~----~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
...+|||+|||+|.++..++.... ..++|+|+|+.|++.|+++. .++.+.++|+.++++++++||
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----------~~~~~~~~d~~~lp~~~~sfD 153 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----------PQVTFCVASSHRLPFADQSLD 153 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----------CCCeEEEeecccCCCcCCcee
Confidence 457899999999999998886643 25899999999999998764 347889999999998889999
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+|++..+ + ..++++.|+|||||++++...
T Consensus 154 ~I~~~~~----~-----~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 154 AIIRIYA----P-----CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred EEEEecC----C-----CCHHHHHhhccCCCEEEEEeC
Confidence 9998654 2 246789999999999999754
No 69
>PLN03075 nicotianamine synthase; Provisional
Probab=99.56 E-value=2.7e-14 Score=124.29 Aligned_cols=106 Identities=18% Similarity=0.231 Sum_probs=87.5
Q ss_pred CCccEEEeeccccHHHHHHHH-hC-CC-cEEEEeCCHHHHHHHHHHhCC-CCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 157 QHLVALDCGSGIGRITKNLLI-RY-FN-EVDLLEPVSHFLDAARESLAP-ENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~-~~-~~-~v~gvD~S~~~l~~a~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
++.+|+|||||.|..+..++. .. +. +++++|+++.+++.|++.+.. .++ ..+++|..+|+.+.....+.||
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL-----~~rV~F~~~Da~~~~~~l~~FD 197 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL-----SKRMFFHTADVMDVTESLKEYD 197 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc-----cCCcEEEECchhhcccccCCcC
Confidence 678999999998855444443 33 33 799999999999999999853 444 4679999999988643346899
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|++. +++++..++...+++++.+.|+|||++++.
T Consensus 198 lVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 198 VVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred EEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 99999 999997678889999999999999999986
No 70
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.55 E-value=4.4e-14 Score=116.64 Aligned_cols=102 Identities=18% Similarity=0.242 Sum_probs=81.7
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..++.+|||+|||+|.++..+++.++. +|+++|+|+.+++.++++....++ .++++++.|... .. .++||+
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~------~~i~~~~~d~~~-~~-~~~~D~ 100 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC------GNIDIIPGEAPI-EL-PGKADA 100 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC------CCeEEEecCchh-hc-CcCCCE
Confidence 346789999999999999999877654 899999999999999998765433 357788887642 22 358999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
|++....++ +..+++.+.+.|+|||++++..
T Consensus 101 v~~~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 101 IFIGGSGGN-----LTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred EEECCCccC-----HHHHHHHHHHhcCCCeEEEEEE
Confidence 998876443 4478999999999999998865
No 71
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.55 E-value=7.3e-14 Score=119.17 Aligned_cols=105 Identities=18% Similarity=0.261 Sum_probs=87.3
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeEE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~V 234 (277)
.++.+|||||||+|.++..+++.+. +++++|+++.+++.+++++...+ ..+++...++.+++ ...++||+|
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~fD~I 118 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESG-------LKIDYRQTTAEELAAEHPGQFDVV 118 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcC-------CceEEEecCHHHhhhhcCCCccEE
Confidence 4678999999999999998887654 59999999999999998875432 24677777777664 234789999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++..+++|++ +...+++++.+.|+|||.+++...
T Consensus 119 i~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 119 TCMEMLEHVP--DPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred EEhhHhhccC--CHHHHHHHHHHHcCCCcEEEEEec
Confidence 9999999998 666899999999999999998754
No 72
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.55 E-value=1.5e-14 Score=120.13 Aligned_cols=107 Identities=17% Similarity=0.189 Sum_probs=85.4
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC---CCCCcee
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD 232 (277)
...+|||||||+|.++..++...+. .|+|+|+|+.|++.|+++....++ .+++++++|+.++. ++++++|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l------~ni~~i~~d~~~~~~~~~~~~~~d 89 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL------KNLHVLCGDANELLDKFFPDGSLS 89 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC------CCEEEEccCHHHHHHhhCCCCcee
Confidence 4568999999999999999988765 899999999999999988766543 47899999987653 4456899
Q ss_pred EEecchhhhcCChh------hHHHHHHHHHhcCCCCcEEEEEe
Q 023787 233 VIWVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~------d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.|++++...+.... ....++++++++|||||.|++..
T Consensus 90 ~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 90 KVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred EEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 99988764432211 12479999999999999999863
No 73
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.55 E-value=5.2e-14 Score=124.61 Aligned_cols=111 Identities=20% Similarity=0.248 Sum_probs=87.0
Q ss_pred CCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-CCCCC----
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETG---- 229 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~---- 229 (277)
++.+|||+|||+|..+..+++... .+|+++|+|+.|++.+++++.... ...++.++++|+.+. +....
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~-----p~~~v~~i~gD~~~~~~~~~~~~~~ 137 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY-----PQLEVHGICADFTQPLALPPEPAAG 137 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC-----CCceEEEEEEcccchhhhhcccccC
Confidence 557899999999999999998863 479999999999999998875421 024567788998763 33221
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
...++++..+++++++++...+|+++++.|+|||.|+|.-+..
T Consensus 138 ~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 138 RRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred CeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 3445556678999998899999999999999999999875443
No 74
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.54 E-value=3.5e-14 Score=117.82 Aligned_cols=146 Identities=20% Similarity=0.322 Sum_probs=108.7
Q ss_pred HHHHhhhcccccccccccccCCCCcccccccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCC---c
Q 023787 106 YREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN---E 182 (277)
Q Consensus 106 y~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~---~ 182 (277)
-..+..||+........ .+.-.+.++..-+.++++... ....+||++|||.|.....+++-... .
T Consensus 32 ~~~~~k~wD~fy~~~~~-----------rFfkdR~wL~~Efpel~~~~~-~~~~~ilEvGCGvGNtvfPll~~~~n~~l~ 99 (264)
T KOG2361|consen 32 EREASKYWDTFYKIHEN-----------RFFKDRNWLLREFPELLPVDE-KSAETILEVGCGVGNTVFPLLKTSPNNRLK 99 (264)
T ss_pred hcchhhhhhhhhhhccc-----------cccchhHHHHHhhHHhhCccc-cChhhheeeccCCCcccchhhhcCCCCCeE
Confidence 34567899875443332 223345566666666554211 22238999999999999999977655 8
Q ss_pred EEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC----CCCCCceeEEecchhhhcCChhhHHHHHHHHHhc
Q 023787 183 VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVG 258 (277)
Q Consensus 183 v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~ 258 (277)
|.++|.||.+++..+++.... ..++...+.|++.- +++.+++|.|++.++|..++++....++.+++++
T Consensus 100 v~acDfsp~Ai~~vk~~~~~~-------e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~l 172 (264)
T KOG2361|consen 100 VYACDFSPRAIELVKKSSGYD-------ESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTL 172 (264)
T ss_pred EEEcCCChHHHHHHHhccccc-------hhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHH
Confidence 999999999999999887653 23444445555432 3567899999999999999999999999999999
Q ss_pred CCCCcEEEEEec
Q 023787 259 LKPGGFFVLKEN 270 (277)
Q Consensus 259 LkpGG~lii~e~ 270 (277)
|||||.+++.|-
T Consensus 173 lKPGG~llfrDY 184 (264)
T KOG2361|consen 173 LKPGGSLLFRDY 184 (264)
T ss_pred hCCCcEEEEeec
Confidence 999999999874
No 75
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.53 E-value=6.8e-14 Score=123.13 Aligned_cols=103 Identities=18% Similarity=0.232 Sum_probs=81.4
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|+++...+++ ..++.+...+... ..+++||+|++
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~-----~~~~~~~~~~~~~--~~~~~fDlVva 231 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQV-----SDRLQVKLIYLEQ--PIEGKADVIVA 231 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCC-----CcceEEEeccccc--ccCCCceEEEE
Confidence 5689999999999999988776666899999999999999999876554 2345555554322 23468999999
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+...+ .+..++.++.++|||||+++++...
T Consensus 232 n~~~~-----~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 232 NILAE-----VIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred ecCHH-----HHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 86543 4557999999999999999998654
No 76
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.53 E-value=9.1e-14 Score=117.00 Aligned_cols=101 Identities=19% Similarity=0.171 Sum_probs=81.7
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||||||+|..+..+++... .+|+++|+++.+++.+++++...+. .+++++++|......+.++||
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~------~~v~~~~gd~~~~~~~~~~fD 147 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY------DNVEVIVGDGTLGYEENAPYD 147 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCeEEEECCcccCCCcCCCcC
Confidence 45788999999999999987776532 3799999999999999999876543 468999999877655567999
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+|++.....+++ ..+.+.|||||++++..
T Consensus 148 ~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 148 RIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred EEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence 999987765544 34667899999998853
No 77
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.53 E-value=1.7e-13 Score=115.43 Aligned_cols=126 Identities=13% Similarity=-0.022 Sum_probs=97.6
Q ss_pred hHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCC------CCCCCCCC
Q 023787 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE------NHMAPDMH 211 (277)
Q Consensus 138 ~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~------~~~~~~~~ 211 (277)
...+|...+.... ..++.+||+.|||.|..+..|+..++. |+|+|+|+..++.+.+..... +.......
T Consensus 28 pnp~L~~~~~~l~----~~~~~rvLvPgCGkg~D~~~LA~~G~~-V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~ 102 (226)
T PRK13256 28 PNEFLVKHFSKLN----INDSSVCLIPMCGCSIDMLFFLSKGVK-VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKG 102 (226)
T ss_pred CCHHHHHHHHhcC----CCCCCeEEEeCCCChHHHHHHHhCCCc-EEEEecCHHHHHHHHHHcCCCcceecccccceecc
Confidence 3345544444332 235689999999999999999999996 999999999999986643211 00001113
Q ss_pred cceeEEEcCCCCCCCC---CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 212 KATNFFCVPLQDFTPE---TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 212 ~~~~~~~~d~~~~~~~---~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
..+++.++|+.+++.. .++||+|+-..+|++++++...++.+.+.++|+|||.+++.
T Consensus 103 ~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 103 DDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred CceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4789999999998642 26899999999999999999999999999999999988876
No 78
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.52 E-value=4.3e-14 Score=117.39 Aligned_cols=100 Identities=18% Similarity=0.242 Sum_probs=76.5
Q ss_pred cEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchh
Q 023787 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWC 239 (277)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~ 239 (277)
.++|+|||+|..+. .++.++.+|+++|+|+.||+.|++.....-. +....+...++.++.-.+++.|+|++..+
T Consensus 36 ~a~DvG~G~Gqa~~-~iae~~k~VIatD~s~~mL~~a~k~~~~~y~-----~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 36 LAWDVGTGNGQAAR-GIAEHYKEVIATDVSEAMLKVAKKHPPVTYC-----HTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred eEEEeccCCCcchH-HHHHhhhhheeecCCHHHHHHhhcCCCcccc-----cCCccccccccccccCCCcceeeehhhhh
Confidence 89999999996666 4456688899999999999999987654321 22333444555555544789999999999
Q ss_pred hhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 240 IGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 240 l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|++. ++.+++.++|+||+.|-++..
T Consensus 110 ~HWFd---le~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 110 VHWFD---LERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred HHhhc---hHHHHHHHHHHcCCCCCEEEE
Confidence 99985 568999999999988744443
No 79
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.52 E-value=1.4e-13 Score=116.06 Aligned_cols=100 Identities=18% Similarity=0.122 Sum_probs=81.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||||||+|..+..+++.... +|+++|+++.+++.|++++...++ .+++++++|..+.....++||
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~------~~v~~~~~d~~~~~~~~~~fD 148 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL------DNVIVIVGDGTQGWEPLAPYD 148 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC------CCeEEEECCcccCCcccCCCC
Confidence 457789999999999999988766432 599999999999999999877553 468899999877554446899
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|++.....+++ ..+.+.|+|||++++.
T Consensus 149 ~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 149 RIYVTAAGPKIP--------EALIDQLKEGGILVMP 176 (215)
T ss_pred EEEEcCCccccc--------HHHHHhcCcCcEEEEE
Confidence 999887765544 3467889999999885
No 80
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.52 E-value=2.5e-14 Score=108.69 Aligned_cols=107 Identities=22% Similarity=0.260 Sum_probs=86.5
Q ss_pred CccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCceeEEe
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVIW 235 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~Vi 235 (277)
+.+|||+|||+|.++..+++.+..+++++|+++..++.++.++...+. ..++++++.|+.+.. .++++||+|+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~D~Iv 75 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGL-----DDRVEVIVGDARDLPEPLPDGKFDLIV 75 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTT-----TTTEEEEESHHHHHHHTCTTT-EEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccC-----CceEEEEECchhhchhhccCceeEEEE
Confidence 358999999999999999988845899999999999999999887554 456899999988775 5678999999
Q ss_pred cchhhhcCC------hhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 236 VQWCIGHLT------DDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 236 ~~~~l~~~~------~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
++..+.... ......+++++.++|||||.+++.-
T Consensus 76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp E--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 998766421 1235689999999999999998863
No 81
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.52 E-value=1.2e-13 Score=117.14 Aligned_cols=105 Identities=20% Similarity=0.316 Sum_probs=88.6
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC-CCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~Vi 235 (277)
.+.+|||+|||+|.++..++..+. +++++|+|+.+++.+++++...+. .++.+...|+.+++.. +++||+|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~D~i~ 117 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPL------LKIEYRCTSVEDLAEKGAKSFDVVT 117 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCC------CceEEEeCCHHHhhcCCCCCccEEE
Confidence 467999999999999998887665 599999999999999998765322 2578888888776543 37899999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+..+++|+. +...+++++.++|+|||.+++.+.
T Consensus 118 ~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 118 CMEVLEHVP--DPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred ehhHHHhCC--CHHHHHHHHHHhcCCCcEEEEEec
Confidence 999999998 666999999999999999998764
No 82
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.50 E-value=6.4e-15 Score=121.21 Aligned_cols=105 Identities=21% Similarity=0.270 Sum_probs=83.5
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD 232 (277)
..+..++||+|||||..+..+- ....+++|||+|.+|++.|.++--... ..++++..+. ..+.+||
T Consensus 123 ~g~F~~~lDLGCGTGL~G~~lR-~~a~~ltGvDiS~nMl~kA~eKg~YD~-----------L~~Aea~~Fl~~~~~er~D 190 (287)
T COG4976 123 LGPFRRMLDLGCGTGLTGEALR-DMADRLTGVDISENMLAKAHEKGLYDT-----------LYVAEAVLFLEDLTQERFD 190 (287)
T ss_pred CCccceeeecccCcCcccHhHH-HHHhhccCCchhHHHHHHHHhccchHH-----------HHHHHHHHHhhhccCCccc
Confidence 3447899999999999999765 445579999999999999988754322 2334443332 3457999
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE-ecCCC
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK-ENIAR 273 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~-e~~~~ 273 (277)
+|++..|+.|+. ++..++.-+...|+|||.|.|+ |..+.
T Consensus 191 Li~AaDVl~YlG--~Le~~~~~aa~~L~~gGlfaFSvE~l~~ 230 (287)
T COG4976 191 LIVAADVLPYLG--ALEGLFAGAAGLLAPGGLFAFSVETLPD 230 (287)
T ss_pred chhhhhHHHhhc--chhhHHHHHHHhcCCCceEEEEecccCC
Confidence 999999999999 8889999999999999999998 65544
No 83
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.49 E-value=1.1e-13 Score=119.56 Aligned_cols=104 Identities=20% Similarity=0.246 Sum_probs=83.5
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHH--HHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAAR--ESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~--~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
-.+.+|||||||.|..+..++.+++..|+|+|+++-..-..+ +++... ...+.+....+++++. .+.||+
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~-------~~~~~~lplgvE~Lp~-~~~FDt 185 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQ-------DPPVFELPLGVEDLPN-LGAFDT 185 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCC-------CccEEEcCcchhhccc-cCCcCE
Confidence 367899999999999999999999999999999988766533 222210 1223344457777776 579999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
|+|.+||.|.. +....|.+++..|+|||.+++-.
T Consensus 186 VF~MGVLYHrr--~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 186 VFSMGVLYHRR--SPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred EEEeeehhccC--CHHHHHHHHHHhhCCCCEEEEEE
Confidence 99999999988 77799999999999999999753
No 84
>PRK14967 putative methyltransferase; Provisional
Probab=99.49 E-value=2.6e-13 Score=115.19 Aligned_cols=106 Identities=15% Similarity=0.053 Sum_probs=82.0
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||+|||+|.++..++..+..+++++|+|+.+++.+++++...+ .++.+++.|+.+. .++++||+|+
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~-------~~~~~~~~d~~~~-~~~~~fD~Vi 106 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAG-------VDVDVRRGDWARA-VEFRPFDVVV 106 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhC-------CeeEEEECchhhh-ccCCCeeEEE
Confidence 4567999999999999998887655589999999999999999876532 2467788888664 3456899999
Q ss_pred cchhhhcCCh-------------------hhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 236 VQWCIGHLTD-------------------DDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 236 ~~~~l~~~~~-------------------~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
++..+...+. ..+..+++++.++|||||++++..
T Consensus 107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~ 159 (223)
T PRK14967 107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQ 159 (223)
T ss_pred ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9854332211 125678899999999999999863
No 85
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.48 E-value=1.3e-13 Score=118.93 Aligned_cols=98 Identities=19% Similarity=0.130 Sum_probs=75.5
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||+|||+|..+..++..+..+|+++|+|+.+++.|++++..+++ ...+.+... +.+||+|+
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~-----~~~~~~~~~--------~~~fD~Vv 184 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGV-----ELNVYLPQG--------DLKADVIV 184 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCC-----CceEEEccC--------CCCcCEEE
Confidence 36789999999999999977766665799999999999999999876543 112222221 12799999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
++...+ .+..++.++.++|||||+++++...
T Consensus 185 ani~~~-----~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 185 ANILAN-----PLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred EcCcHH-----HHHHHHHHHHHhcCCCcEEEEEECc
Confidence 875432 4557899999999999999998654
No 86
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.48 E-value=1.9e-13 Score=115.83 Aligned_cols=109 Identities=18% Similarity=0.151 Sum_probs=91.4
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCce
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY 231 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~f 231 (277)
.....+|||+|||+|..+..++++.. .++++||+.+.|.+.|+++.+.+++ ..++++++.|+.++. ....+|
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l-----~~ri~v~~~Di~~~~~~~~~~~f 116 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL-----EERIQVIEADIKEFLKALVFASF 116 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcc-----hhceeEehhhHHHhhhccccccc
Confidence 34478999999999999998887744 4899999999999999999988776 688999999999885 334579
Q ss_pred eEEecchhhhcCCh----------------hhHHHHHHHHHhcCCCCcEEEEE
Q 023787 232 DVIWVQWCIGHLTD----------------DDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 232 D~Vi~~~~l~~~~~----------------~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
|+|+|+-.+.-... -+++++++.+.++|||||.+.++
T Consensus 117 D~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 117 DLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred CEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 99999866543321 24789999999999999999986
No 87
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.46 E-value=9.9e-13 Score=115.43 Aligned_cols=106 Identities=19% Similarity=0.163 Sum_probs=81.6
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
++.+|||+|||+|.++..++...+. +|+++|+|+.+++.|++++...++ ..++.++++|+.+. .++++||+|+
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~-----~~~i~~~~~D~~~~-~~~~~fD~Iv 194 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL-----EDRVTLIQSDLFAA-LPGRKYDLIV 194 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECchhhc-cCCCCccEEE
Confidence 4568999999999999999877653 799999999999999999876554 34688999998543 2345899999
Q ss_pred cchhh-------------hcCCh----------hhHHHHHHHHHhcCCCCcEEEEE
Q 023787 236 VQWCI-------------GHLTD----------DDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 236 ~~~~l-------------~~~~~----------~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
++... +|-+. +....+++.+.+.|+|||++++-
T Consensus 195 ~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 195 SNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred ECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 87321 11110 12467899999999999999873
No 88
>PRK04266 fibrillarin; Provisional
Probab=99.46 E-value=7.1e-13 Score=112.35 Aligned_cols=100 Identities=16% Similarity=0.071 Sum_probs=76.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC----CCCCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETG 229 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~ 229 (277)
..++.+|||+|||+|.++..++.... ..|+++|+|+.|++.+.++... ..++.++.+|..+. .+. .
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~--------~~nv~~i~~D~~~~~~~~~l~-~ 140 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE--------RKNIIPILADARKPERYAHVV-E 140 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh--------cCCcEEEECCCCCcchhhhcc-c
Confidence 56788999999999999998887643 3799999999999988777654 24678888887652 122 5
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
+||+|++.... +.....+++++.++|||||.+++
T Consensus 141 ~~D~i~~d~~~----p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 141 KVDVIYQDVAQ----PNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred cCCEEEECCCC----hhHHHHHHHHHHHhcCCCcEEEE
Confidence 79999854221 11234578999999999999999
No 89
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.46 E-value=7.6e-13 Score=110.24 Aligned_cols=103 Identities=14% Similarity=0.150 Sum_probs=82.1
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCce
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~f 231 (277)
..++.+|||+|||+|.++..++... . .+|+++|+|+.|++.+++++...++ ..++.++++|..+.. ...++|
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~-----~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV-----LNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC-----CCCeEEEEechhhhHhhcCCCC
Confidence 5678899999999999999887653 2 3799999999999999999876543 246788888887642 223689
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
|.|++... ..++..+++.+.+.|+|||++++
T Consensus 113 D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 113 DRIFIGGG-----SEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CEEEECCC-----cccHHHHHHHHHHHcCCCcEEEE
Confidence 99998642 12567899999999999999987
No 90
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.45 E-value=3.5e-13 Score=108.50 Aligned_cols=86 Identities=15% Similarity=0.107 Sum_probs=72.4
Q ss_pred EEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCc
Q 023787 184 DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGG 263 (277)
Q Consensus 184 ~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG 263 (277)
+|+|+|+.|++.|+++....+.. ...+++++++|+.++++++++||+|++.+++++++ +...++++++|+|||||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~---~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpGG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS---CYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPGS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc---CCCceEEEEechhhCCCCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcCe
Confidence 58999999999998776431110 02468999999999999888999999999999998 77799999999999999
Q ss_pred EEEEEecCCCC
Q 023787 264 FFVLKENIARS 274 (277)
Q Consensus 264 ~lii~e~~~~~ 274 (277)
.+++.|...++
T Consensus 76 ~l~i~d~~~~~ 86 (160)
T PLN02232 76 RVSILDFNKSN 86 (160)
T ss_pred EEEEEECCCCC
Confidence 99999876553
No 91
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.45 E-value=1e-12 Score=110.67 Aligned_cols=101 Identities=18% Similarity=0.086 Sum_probs=80.1
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||+|||+|..+..++... .+|+++|+++.+++.+++++...++ .++++...|..+...+.++||+|
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~fD~I 148 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGL------HNVSVRHGDGWKGWPAYAPFDRI 148 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCC------CceEEEECCcccCCCcCCCcCEE
Confidence 4577899999999999998766554 4799999999999999999876543 35888888876543334789999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++...+++++ +.+.+.|+|||++++.-.
T Consensus 149 ~~~~~~~~~~--------~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 149 LVTAAAPEIP--------RALLEQLKEGGILVAPVG 176 (212)
T ss_pred EEccCchhhh--------HHHHHhcCCCcEEEEEEc
Confidence 9988766543 456789999999988643
No 92
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.44 E-value=7e-13 Score=111.31 Aligned_cols=99 Identities=16% Similarity=0.162 Sum_probs=76.4
Q ss_pred CCCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--------
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------- 225 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------- 225 (277)
.++.+|||||||+|.++..+++... ..|++||+++ |. . ..++.++++|+.+..
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~--------~--------~~~v~~i~~D~~~~~~~~~i~~~ 112 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD--------P--------IVGVDFLQGDFRDELVLKALLER 112 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc--------C--------CCCcEEEecCCCChHHHHHHHHH
Confidence 4667999999999999998888753 2799999987 21 1 134789999998853
Q ss_pred CCCCceeEEecchhhhcCChh--h-------HHHHHHHHHhcCCCCcEEEEEecC
Q 023787 226 PETGRYDVIWVQWCIGHLTDD--D-------FVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 226 ~~~~~fD~Vi~~~~l~~~~~~--d-------~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+.+++||+|+|..+.++.... + ...+++++.++|||||.|++....
T Consensus 113 ~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 113 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 456789999998876654321 1 246899999999999999997543
No 93
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.44 E-value=7.1e-13 Score=119.52 Aligned_cols=107 Identities=19% Similarity=0.135 Sum_probs=86.6
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC--CCCCCcee
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYD 232 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD 232 (277)
..+..+||||||+|.++..++...+. .++|+|+++.|++.+.+++...++ .++.++++|+..+ .++++++|
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL------~NV~~i~~DA~~ll~~~~~~s~D 194 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL------KNLLIINYDARLLLELLPSNSVE 194 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHHHhhhhCCCCcee
Confidence 34568999999999999999988765 899999999999999998876554 5688999998764 35678999
Q ss_pred EEecchhhhcCChh----hHHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDD----DFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~----d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.|++++...+.... ....++++++|+|+|||.+.+.
T Consensus 195 ~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 195 KIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred EEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 99987654332211 1257999999999999999986
No 94
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.43 E-value=1.8e-12 Score=114.90 Aligned_cols=104 Identities=20% Similarity=0.177 Sum_probs=81.1
Q ss_pred ccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecc
Q 023787 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (277)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~ 237 (277)
.+|||+|||+|.++..++...+. +|+++|+|+.+++.|++++...++ ..+++++++|+.+.. ++++||+|+++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l-----~~~i~~~~~D~~~~l-~~~~fDlIvsN 208 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL-----EDRVTLIESDLFAAL-PGRRYDLIVSN 208 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CCcEEEEECchhhhC-CCCCccEEEEC
Confidence 68999999999999999877653 899999999999999999876554 346899999986532 34589999987
Q ss_pred hhh-------------hcCCh----------hhHHHHHHHHHhcCCCCcEEEEE
Q 023787 238 WCI-------------GHLTD----------DDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 238 ~~l-------------~~~~~----------~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
... +|-|. +....+++++.+.|+|||++++-
T Consensus 209 PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 209 PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 321 11111 12467899999999999999983
No 95
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.43 E-value=1.8e-12 Score=94.68 Aligned_cols=102 Identities=26% Similarity=0.337 Sum_probs=82.9
Q ss_pred cEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC-CCCceeEEecch
Q 023787 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIWVQW 238 (277)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~Vi~~~ 238 (277)
+|+|+|||+|..+..++.....+++++|+++.+++.+++...... ..++.+...|..+... ..++||+|++..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL------ADNVEVLKGDAEELPPEADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc------ccceEEEEcChhhhccccCCceEEEEEcc
Confidence 589999999999998886444589999999999999985332211 3568888888888764 457899999999
Q ss_pred hhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 239 ~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+++++ .+....+++.+.+.|+|||.+++.
T Consensus 75 ~~~~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 99884 347779999999999999999875
No 96
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.43 E-value=7.7e-13 Score=109.82 Aligned_cols=91 Identities=12% Similarity=-0.018 Sum_probs=73.6
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC-C-CCCCCceeEE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-TPETGRYDVI 234 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~fD~V 234 (277)
++.+|||+|||+|.++..++......++|+|+|+.|++.++++ ++++++.|+.+ + ++++++||+|
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-------------~~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-------------GVNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-------------CCeEEEEEhhhcccccCCCCcCEE
Confidence 5679999999999999988765544689999999999998652 25677777765 3 2556799999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPG 262 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpG 262 (277)
+++.++||++ +...+++++.|.++++
T Consensus 80 i~~~~l~~~~--d~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 80 ILSQTLQATR--NPEEILDEMLRVGRHA 105 (194)
T ss_pred EEhhHhHcCc--CHHHHHHHHHHhCCeE
Confidence 9999999998 6668999998887653
No 97
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.43 E-value=2.7e-12 Score=110.53 Aligned_cols=105 Identities=25% Similarity=0.291 Sum_probs=82.1
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.+.+|||+|||+|.++..++..... +++++|+|+.+++.++++....++ .++.++++|+.+ .+++++||+|+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~------~~~~~~~~d~~~-~~~~~~fD~Vi 159 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL------DNVTFLQSDWFE-PLPGGKFDLIV 159 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhc-cCcCCceeEEE
Confidence 4468999999999999999877544 899999999999999998876543 358889999866 33457999999
Q ss_pred cchhhhc------CCh------------------hhHHHHHHHHHhcCCCCcEEEEE
Q 023787 236 VQWCIGH------LTD------------------DDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 236 ~~~~l~~------~~~------------------~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
++..+.. +.. .....+++++.++|+|||.+++.
T Consensus 160 ~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 160 SNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred ECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 8654321 111 11347899999999999999985
No 98
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.43 E-value=9e-13 Score=108.02 Aligned_cols=100 Identities=18% Similarity=0.172 Sum_probs=81.8
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCC-CCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ-DFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~Vi 235 (277)
.+.-|||||||+|..+..+...+. .++|+|+|+.|++.|.++- ...+++.+|+- .+|+.+++||.+|
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e-----------~egdlil~DMG~GlpfrpGtFDg~I 117 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERE-----------LEGDLILCDMGEGLPFRPGTFDGVI 117 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhh-----------hhcCeeeeecCCCCCCCCCccceEE
Confidence 578899999999999998877774 5999999999999998742 12466777775 4678899999999
Q ss_pred cchhhhc---------CChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 236 VQWCIGH---------LTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 236 ~~~~l~~---------~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+..++.+ .|...+..|+..++.+|++|+..++.
T Consensus 118 SISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 118 SISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred EeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 7665543 35556888999999999999999986
No 99
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.42 E-value=2.6e-12 Score=112.95 Aligned_cols=104 Identities=24% Similarity=0.247 Sum_probs=81.2
Q ss_pred ccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecc
Q 023787 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (277)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~ 237 (277)
.+|||+|||+|.++..++..... +|+++|+|+.+++.|+++....++ ..+++++++|+.+. .+..+||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~-----~~~v~~~~~d~~~~-~~~~~fDlIvsN 189 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL-----EHRVEFIQSNLFEP-LAGQKIDIIVSN 189 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECchhcc-CcCCCccEEEEC
Confidence 68999999999999999877653 899999999999999999876544 23588999988663 233489999987
Q ss_pred h-------------hhhcCCh----------hhHHHHHHHHHhcCCCCcEEEEE
Q 023787 238 W-------------CIGHLTD----------DDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 238 ~-------------~l~~~~~----------~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
. ++.|-|. .....++..+.+.|+|||++++-
T Consensus 190 PPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 190 PPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred CCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 2 2223221 14667899999999999998873
No 100
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.41 E-value=1.4e-12 Score=111.91 Aligned_cols=103 Identities=21% Similarity=0.340 Sum_probs=87.8
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..+..+|+|||+|+|.++..++++++. +++.+|. |.+++.+++ . .+++++.+|+. -+++. +|+
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---~---------~rv~~~~gd~f-~~~P~--~D~ 161 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---A---------DRVEFVPGDFF-DPLPV--ADV 161 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---T---------TTEEEEES-TT-TCCSS--ESE
T ss_pred ccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---c---------cccccccccHH-hhhcc--ccc
Confidence 345578999999999999999999888 9999998 889999888 1 56999999998 45553 999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCC--cEEEEEecCCC
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPG--GFFVLKENIAR 273 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpG--G~lii~e~~~~ 273 (277)
|++.+++|+.++++...+|+++++.|+|| |+|+|.|.+.+
T Consensus 162 ~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 162 YLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp EEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred eeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence 99999999999999999999999999999 99999998754
No 101
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.41 E-value=2.8e-12 Score=106.60 Aligned_cols=104 Identities=16% Similarity=0.121 Sum_probs=78.3
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-CCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD 232 (277)
..++.+|||+|||+|.++..++.... .+|+++|+|+.|++.+++++...+. .+++++.+|+.+. ......+|
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~------~~v~~~~~d~~~~~~~~~~~~d 111 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV------KNVEVIEGSAPECLAQLAPAPD 111 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CCeEEEECchHHHHhhCCCCCC
Confidence 45678999999999999998876543 3799999999999999998866443 3578888887542 21113457
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
.|+.... .++..+++++.+.|+|||++++...
T Consensus 112 ~v~~~~~------~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 112 RVCIEGG------RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred EEEEECC------cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 6654321 2466899999999999999998754
No 102
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=1.9e-12 Score=112.52 Aligned_cols=104 Identities=23% Similarity=0.213 Sum_probs=81.1
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++.+|||+|||+|.++...++.+..+++|+|+.|..++.|++|...++.. ..+.....+....+ ..++||+|++
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~-----~~~~~~~~~~~~~~-~~~~~DvIVA 235 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVE-----LLVQAKGFLLLEVP-ENGPFDVIVA 235 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCc-----hhhhcccccchhhc-ccCcccEEEe
Confidence 78899999999999999988888889999999999999999999887652 11112222222222 2369999999
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
|-.- +-+..+...+.+.|||||+++++-.+
T Consensus 236 NILA-----~vl~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 236 NILA-----EVLVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred hhhH-----HHHHHHHHHHHHHcCCCceEEEEeeh
Confidence 8742 24568999999999999999998644
No 103
>PRK00811 spermidine synthase; Provisional
Probab=99.39 E-value=2.5e-12 Score=112.86 Aligned_cols=112 Identities=19% Similarity=0.194 Sum_probs=83.6
Q ss_pred CCCccEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~ 233 (277)
..+.+||+||||+|..+..+++. ...+|++||+++.+++.|++.+...+.. .....+++++.+|...+. ...++||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~-~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGG-AYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccc-cccCCceEEEECchHHHHhhCCCcccE
Confidence 45679999999999999998865 3458999999999999999987532110 001467889999987653 23578999
Q ss_pred EecchhhhcCChhh--HHHHHHHHHhcCCCCcEEEEE
Q 023787 234 IWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 234 Vi~~~~l~~~~~~d--~~~~l~~~~r~LkpGG~lii~ 268 (277)
|++...-.+.+... ...+++.+++.|+|||++++.
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99865433322222 257899999999999999874
No 104
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.39 E-value=9.6e-13 Score=110.87 Aligned_cols=125 Identities=18% Similarity=0.168 Sum_probs=92.6
Q ss_pred hHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCC-CCCC-----CCCCC
Q 023787 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP-ENHM-----APDMH 211 (277)
Q Consensus 138 ~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~-~~~~-----~~~~~ 211 (277)
....|..++.. +. ..++.+||..|||.|.....|+++++. |+|+|+|+..++.+.+.... .... .....
T Consensus 22 ~~p~L~~~~~~-l~---~~~~~rvLvPgCG~g~D~~~La~~G~~-VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~ 96 (218)
T PF05724_consen 22 PNPALVEYLDS-LA---LKPGGRVLVPGCGKGYDMLWLAEQGHD-VVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQA 96 (218)
T ss_dssp STHHHHHHHHH-HT---TSTSEEEEETTTTTSCHHHHHHHTTEE-EEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETT
T ss_pred CCHHHHHHHHh-cC---CCCCCeEEEeCCCChHHHHHHHHCCCe-EEEEecCHHHHHHHHHHhccCCCcccccceeeecC
Confidence 33445555443 11 456789999999999999999998884 99999999999998554322 1000 00113
Q ss_pred cceeEEEcCCCCCCCCC-CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 212 KATNFFCVPLQDFTPET-GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 212 ~~~~~~~~d~~~~~~~~-~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
.+++++++|+.+++... ++||+|+=..+|+-++++...+..+.+.++|+|||.+++
T Consensus 97 ~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 97 GRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp SSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred CceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 46899999999986543 589999999999999999999999999999999999433
No 105
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.38 E-value=5e-12 Score=113.42 Aligned_cols=108 Identities=14% Similarity=-0.027 Sum_probs=85.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||+|||+|.++..++..+. .++|+|+++.|++.+++++...++ .++.+.+.|+.+++..+++||+|
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~------~~i~~~~~D~~~l~~~~~~~D~I 252 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGI------EDFFVKRGDATKLPLSSESVDAI 252 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCC------CCCeEEecchhcCCcccCCCCEE
Confidence 45678999999999999887665444 699999999999999999876554 23778899999988777899999
Q ss_pred ecchhhhcC-------ChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 235 WVQWCIGHL-------TDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 235 i~~~~l~~~-------~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+++..+..- ..+-...+++++.++|||||++++.-
T Consensus 253 v~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 253 ATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred EECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 997543211 11225789999999999999998864
No 106
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.38 E-value=1.9e-12 Score=113.33 Aligned_cols=102 Identities=19% Similarity=0.236 Sum_probs=77.8
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||+|||+|.++...++.+..+|+++|++|.+++.|++|...+++. .++.. ....+. ..++||+|+
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~-----~~~~v--~~~~~~--~~~~~dlvv 230 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVE-----DRIEV--SLSEDL--VEGKFDLVV 230 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-T-----TCEEE--SCTSCT--CCS-EEEEE
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCC-----eeEEE--EEeccc--ccccCCEEE
Confidence 366799999999999999888778889999999999999999999887662 33322 222222 237999999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
++-... -+..++..+.++|+|||+++++-..
T Consensus 231 ANI~~~-----vL~~l~~~~~~~l~~~G~lIlSGIl 261 (295)
T PF06325_consen 231 ANILAD-----VLLELAPDIASLLKPGGYLILSGIL 261 (295)
T ss_dssp EES-HH-----HHHHHHHHCHHHEEEEEEEEEEEEE
T ss_pred ECCCHH-----HHHHHHHHHHHhhCCCCEEEEcccc
Confidence 987743 5667889999999999999998543
No 107
>PRK14968 putative methyltransferase; Provisional
Probab=99.38 E-value=6e-12 Score=103.50 Aligned_cols=109 Identities=17% Similarity=0.135 Sum_probs=82.1
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.++.+|||+|||+|.++..++..+ .+++++|+|+.+++.+++++...+.. ...+.+...|+.+.. .+.+||+|+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~----~~~~~~~~~d~~~~~-~~~~~d~vi 95 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIR----NNGVEVIRSDLFEPF-RGDKFDVIL 95 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCC----CcceEEEeccccccc-cccCceEEE
Confidence 356789999999999999998774 57999999999999999988654431 112677888876633 335899999
Q ss_pred cchhhhcCC-------------------hhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 236 VQWCIGHLT-------------------DDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 236 ~~~~l~~~~-------------------~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++..+...+ ...+..+++++.++|||||.+++...
T Consensus 96 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 96 FNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred ECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 876543211 12356789999999999999888643
No 108
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.37 E-value=2.4e-12 Score=114.83 Aligned_cols=112 Identities=19% Similarity=0.245 Sum_probs=81.0
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCC----CCCCCCCCcceeEEEcCCCCCC----CC-
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE----NHMAPDMHKATNFFCVPLQDFT----PE- 227 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~----~~~~~~~~~~~~~~~~d~~~~~----~~- 227 (277)
++.+|||+|||-|.....+.......++|+|+|...|+.|+++.... .-......-...|+.+|..... +.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 77899999999998888788888889999999999999999998210 0000001234667777765431 22
Q ss_pred -CCceeEEecchhhhcC--ChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 228 -TGRYDVIWVQWCIGHL--TDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 228 -~~~fD~Vi~~~~l~~~--~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
...||+|-|.+++||. +.+....+|+++...|+|||+|+.+
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3599999999999987 4555777999999999999999986
No 109
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.36 E-value=4.4e-12 Score=102.97 Aligned_cols=95 Identities=12% Similarity=0.005 Sum_probs=77.2
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC--CCCCCceeE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV 233 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~ 233 (277)
.++.+|||+|||.|.+...|.+.......|+|++++.+..+.++ .+..+++|+.+. .+++++||.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-------------Gv~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-------------GVSVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-------------CCCEEECCHHHhHhhCCCCCccE
Confidence 37899999999999999988775444799999999998888764 256788888764 278899999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
||++.++.++. +...+|+++.|+ |...+++
T Consensus 79 VIlsqtLQ~~~--~P~~vL~EmlRV---gr~~IVs 108 (193)
T PF07021_consen 79 VILSQTLQAVR--RPDEVLEEMLRV---GRRAIVS 108 (193)
T ss_pred EehHhHHHhHh--HHHHHHHHHHHh---cCeEEEE
Confidence 99999999998 555899999776 4455544
No 110
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.36 E-value=1.5e-11 Score=107.39 Aligned_cols=106 Identities=25% Similarity=0.282 Sum_probs=80.9
Q ss_pred CCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
.++.+|||+|||+|..+..++...+ .+++++|+|+.+++.|++++. ... ..++.++..|+.+.. .+++||+|
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~-----~~~i~~~~~d~~~~~-~~~~fD~I 179 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGL-----GARVEFLQGDWFEPL-PGGRFDLI 179 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCC-----CCcEEEEEccccCcC-CCCceeEE
Confidence 4567999999999999999987764 389999999999999999976 111 356889999885532 24689999
Q ss_pred ecchhhhc------CC------------------hhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 235 WVQWCIGH------LT------------------DDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 235 i~~~~l~~------~~------------------~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+++....- +. -+....+++++.++|+|||++++.
T Consensus 180 v~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 180 VSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred EECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 98643211 11 012467889999999999999984
No 111
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.35 E-value=1.2e-11 Score=99.83 Aligned_cols=115 Identities=19% Similarity=0.175 Sum_probs=92.5
Q ss_pred HHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEE
Q 023787 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF 217 (277)
Q Consensus 139 ~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 217 (277)
..-++-+....+. +.++.+++|||||||..+..++..++. +|+++|-++++++..++|+...+. .++..+
T Consensus 19 K~EIRal~ls~L~---~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~------~n~~vv 89 (187)
T COG2242 19 KEEIRALTLSKLR---PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV------DNLEVV 89 (187)
T ss_pred HHHHHHHHHHhhC---CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC------CcEEEE
Confidence 3334444333443 778999999999999999999965665 899999999999999999887664 678889
Q ss_pred EcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 218 CVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 218 ~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.++..+......+||.|+.... . .+..+++.+...|||||++++.
T Consensus 90 ~g~Ap~~L~~~~~~daiFIGGg-~-----~i~~ile~~~~~l~~ggrlV~n 134 (187)
T COG2242 90 EGDAPEALPDLPSPDAIFIGGG-G-----NIEEILEAAWERLKPGGRLVAN 134 (187)
T ss_pred eccchHhhcCCCCCCEEEECCC-C-----CHHHHHHHHHHHcCcCCeEEEE
Confidence 9988776433337999999988 3 4558999999999999999985
No 112
>PTZ00146 fibrillarin; Provisional
Probab=99.34 E-value=1.3e-11 Score=107.23 Aligned_cols=103 Identities=15% Similarity=-0.023 Sum_probs=76.8
Q ss_pred CCCCCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC---CCCC
Q 023787 154 RNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPET 228 (277)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~ 228 (277)
...++.+|||+|||+|.++..++.... ..|++||+|+.|++...+.... ..++.++..|+... ....
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~--------r~NI~~I~~Da~~p~~y~~~~ 200 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK--------RPNIVPIIEDARYPQKYRMLV 200 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh--------cCCCEEEECCccChhhhhccc
Confidence 356788999999999999999987753 2799999999876555554432 24577888887542 2223
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.+||+|++.... + ++...++.++.++|||||.|+|.
T Consensus 201 ~~vDvV~~Dva~---p-dq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 201 PMVDVIFADVAQ---P-DQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CCCCEEEEeCCC---c-chHHHHHHHHHHhccCCCEEEEE
Confidence 589999987742 2 24456777999999999999995
No 113
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.34 E-value=1.2e-11 Score=112.47 Aligned_cols=104 Identities=20% Similarity=0.200 Sum_probs=78.9
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC-CCCceeEE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~V 234 (277)
++.+|||+|||+|.++..++...+. +|+++|+|+.|++.|+++....+ .+++++++|+.+... ..++||+|
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g-------~rV~fi~gDl~e~~l~~~~~FDLI 323 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG-------ARVEFAHGSWFDTDMPSEGKWDII 323 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-------CcEEEEEcchhccccccCCCccEE
Confidence 4568999999999999988866543 79999999999999999986542 368899999865432 23589999
Q ss_pred ecchhhhcCCh-----------------------hhHHHHHHHHHhcCCCCcEEEE
Q 023787 235 WVQWCIGHLTD-----------------------DDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 235 i~~~~l~~~~~-----------------------~d~~~~l~~~~r~LkpGG~lii 267 (277)
+|+.....-.+ +-...+++.+.+.|+|||.+++
T Consensus 324 VSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil 379 (423)
T PRK14966 324 VSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL 379 (423)
T ss_pred EECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 99764211000 1145778888899999999876
No 114
>PRK04457 spermidine synthase; Provisional
Probab=99.34 E-value=7e-12 Score=108.80 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=81.6
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~ 233 (277)
.++.+|||||||+|.++..++...+. +++++|+++.+++.|++++...+. ..+++++.+|..++. ..+++||+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~-----~~rv~v~~~Da~~~l~~~~~~yD~ 139 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPEN-----GERFEVIEADGAEYIAVHRHSTDV 139 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCC-----CCceEEEECCHHHHHHhCCCCCCE
Confidence 35678999999999999988877654 899999999999999999765322 357889999976542 22368999
Q ss_pred Eecchhh-hcCChh-hHHHHHHHHHhcCCCCcEEEEE
Q 023787 234 IWVQWCI-GHLTDD-DFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 234 Vi~~~~l-~~~~~~-d~~~~l~~~~r~LkpGG~lii~ 268 (277)
|++...- ...+.. ....+++++.+.|+|||++++.
T Consensus 140 I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 140 ILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred EEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 9975311 111110 1258999999999999999984
No 115
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.34 E-value=1e-11 Score=110.42 Aligned_cols=101 Identities=20% Similarity=0.190 Sum_probs=79.8
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||+|||+|.++..+++.... .|+++|+++.|++.|++++...+. .++.++++|..+...+.++||
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~------~nV~~i~gD~~~~~~~~~~fD 151 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI------ENVIFVCGDGYYGVPEFAPYD 151 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEeCChhhcccccCCcc
Confidence 456789999999999999988876542 599999999999999998876543 457888888876655556899
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+|++...+.+++ ..+.+.|+|||++++..
T Consensus 152 ~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 152 VIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred EEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 999987665543 23567899999998853
No 116
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.2e-11 Score=101.89 Aligned_cols=101 Identities=23% Similarity=0.223 Sum_probs=84.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|..+.-++ +...+|+.+|..+...+.|++++...++ .|+.+.++|...--.+.++||.|
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla-~l~~~V~siEr~~~L~~~A~~~L~~lg~------~nV~v~~gDG~~G~~~~aPyD~I 142 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLA-RLVGRVVSIERIEELAEQARRNLETLGY------ENVTVRHGDGSKGWPEEAPYDRI 142 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHH-HHhCeEEEEEEcHHHHHHHHHHHHHcCC------CceEEEECCcccCCCCCCCcCEE
Confidence 6788999999999999999666 4444799999999999999999988775 46899999988765556899999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+.......+| + .+.+.|||||++++-..
T Consensus 143 ~Vtaaa~~vP--~------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 143 IVTAAAPEVP--E------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred EEeeccCCCC--H------HHHHhcccCCEEEEEEc
Confidence 9999988777 2 34567999999999754
No 117
>PHA03411 putative methyltransferase; Provisional
Probab=99.33 E-value=8.9e-12 Score=107.17 Aligned_cols=100 Identities=19% Similarity=0.258 Sum_probs=80.8
Q ss_pred CCccEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
...+|||+|||+|.++..++.+. ..+|+++|+|+.|++.+++++. ++++++.|+.++... .+||+|+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-----------~v~~v~~D~~e~~~~-~kFDlII 131 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-----------EAEWITSDVFEFESN-EKFDVVI 131 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-----------CCEEEECchhhhccc-CCCcEEE
Confidence 45699999999999999887664 3479999999999999998742 477899999887543 6899999
Q ss_pred cchhhhcCChhh------------------HHHHHHHHHhcCCCCcEEEEE
Q 023787 236 VQWCIGHLTDDD------------------FVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 236 ~~~~l~~~~~~d------------------~~~~l~~~~r~LkpGG~lii~ 268 (277)
++..+++.+..+ +.+++.....+|+|+|.+++.
T Consensus 132 sNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 132 SNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred EcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 999988865432 246778888999999988775
No 118
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.33 E-value=8.5e-12 Score=106.51 Aligned_cols=105 Identities=13% Similarity=0.145 Sum_probs=83.3
Q ss_pred CCCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC------CC
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PE 227 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~ 227 (277)
.++.+|||+|||+|..+..++.... .+|+++|+++.+++.|++++...++ ..+++++.+|+.+.. .+
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl-----~~~i~~~~gda~~~L~~l~~~~~ 141 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV-----DHKINFIQSDALSALDQLLNNDP 141 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEccHHHHHHHHHhCCC
Confidence 3567999999999999888876543 3899999999999999999988766 457899999886641 12
Q ss_pred CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
.++||+|++... .+....++..+.+.|+|||.+++ ||+
T Consensus 142 ~~~fD~VfiDa~-----k~~y~~~~~~~~~ll~~GG~ii~-dn~ 179 (234)
T PLN02781 142 KPEFDFAFVDAD-----KPNYVHFHEQLLKLVKVGGIIAF-DNT 179 (234)
T ss_pred CCCCCEEEECCC-----HHHHHHHHHHHHHhcCCCeEEEE-EcC
Confidence 368999987543 23566889999999999998766 443
No 119
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.30 E-value=1.7e-11 Score=99.56 Aligned_cols=102 Identities=14% Similarity=0.113 Sum_probs=79.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||+|||+|.++..++++ ..+++++|+++.|++.+++++.. ..+++++.+|+.++++++.+||.|
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~--------~~~v~ii~~D~~~~~~~~~~~d~v 81 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA--------ADNLTVIHGDALKFDLPKLQPYKV 81 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc--------CCCEEEEECchhcCCccccCCCEE
Confidence 446679999999999999999977 45799999999999999998864 246889999999988776679999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+++..++ +..+.+..+++.. .+.++|.+++.
T Consensus 82 i~n~Py~-~~~~~i~~~l~~~--~~~~~~~l~~q 112 (169)
T smart00650 82 VGNLPYN-ISTPILFKLLEEP--PAFRDAVLMVQ 112 (169)
T ss_pred EECCCcc-cHHHHHHHHHhcC--CCcceEEEEEE
Confidence 9987664 3433444444432 24588888776
No 120
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.30 E-value=1.1e-11 Score=102.56 Aligned_cols=118 Identities=22% Similarity=0.341 Sum_probs=74.9
Q ss_pred CCCCccEEEeeccccHH----HHHHHHh---CCC---cEEEEeCCHHHHHHHHHHh------C-------------CC--
Q 023787 155 NNQHLVALDCGSGIGRI----TKNLLIR---YFN---EVDLLEPVSHFLDAARESL------A-------------PE-- 203 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~----s~~l~~~---~~~---~v~gvD~S~~~l~~a~~~~------~-------------~~-- 203 (277)
.....+|+..||+||.- +..+.+. ... +|+|+|+|+.+++.|++-. . ..
T Consensus 29 ~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~ 108 (196)
T PF01739_consen 29 PGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGG 108 (196)
T ss_dssp S-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CC
T ss_pred CCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCC
Confidence 34678999999999963 3323331 122 8999999999999998732 0 00
Q ss_pred CCC-CCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE--ecCC
Q 023787 204 NHM-APDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK--ENIA 272 (277)
Q Consensus 204 ~~~-~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~--e~~~ 272 (277)
+.. .......+.|...|+.+.....+.||+|+|.+|+.|++.+....+++.+++.|+|||+|++. |.+.
T Consensus 109 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE~l~ 180 (196)
T PF01739_consen 109 GYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSESLP 180 (196)
T ss_dssp CTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT--ST
T ss_pred ceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCccCC
Confidence 000 11123578999999988444457999999999999999999999999999999999999996 5554
No 121
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.29 E-value=1.7e-11 Score=101.32 Aligned_cols=97 Identities=22% Similarity=0.146 Sum_probs=71.8
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (277)
..++.+|||+|||+|.++..++..... +|+++|+|+.+ . ..++.+++.|+.+..
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~-----------~~~i~~~~~d~~~~~~~~~l~~ 92 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------P-----------IENVDFIRGDFTDEEVLNKIRE 92 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------c-----------CCCceEEEeeCCChhHHHHHHH
Confidence 457789999999999999988876533 69999999854 1 134677888876642
Q ss_pred -CCCCceeEEecchhhh--------cCC-hhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 226 -PETGRYDVIWVQWCIG--------HLT-DDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 226 -~~~~~fD~Vi~~~~l~--------~~~-~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.+.++||+|++..+.+ |.. .++...++..+.++|+|||++++.
T Consensus 93 ~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 93 RVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred HhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 3456899999865322 211 123468999999999999999985
No 122
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.28 E-value=3e-11 Score=104.20 Aligned_cols=102 Identities=22% Similarity=0.211 Sum_probs=77.0
Q ss_pred CccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC--CCCceeEE
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYDVI 234 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~fD~V 234 (277)
+.+|||+|||+|.++..++..... +|+++|+|+.+++.|++++..++ .+++++|+.+... ..++||+|
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~---------~~~~~~D~~~~l~~~~~~~fDlV 157 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG---------GTVHEGDLYDALPTALRGRVDIL 157 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---------CEEEEeechhhcchhcCCCEeEE
Confidence 458999999999999988876543 79999999999999999986532 3678888765321 12579999
Q ss_pred ecchhhh------cCChh------------------hHHHHHHHHHhcCCCCcEEEEE
Q 023787 235 WVQWCIG------HLTDD------------------DFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 235 i~~~~l~------~~~~~------------------d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+++.... .++++ -+..++..+.++|+|||++++.
T Consensus 158 v~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 158 AANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred EECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9886432 11111 1357888889999999999975
No 123
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.28 E-value=6e-12 Score=103.17 Aligned_cols=131 Identities=18% Similarity=0.207 Sum_probs=78.7
Q ss_pred HhhhcccccccccccccCCCCcccccccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeC
Q 023787 109 GISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188 (277)
Q Consensus 109 ~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~ 188 (277)
+.+.+..-+..|+.+..||......+...+-..+...+.. .++...|.|+|||.+.++..+- ... .|...|+
T Consensus 30 A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~------~~~~~viaD~GCGdA~la~~~~-~~~-~V~SfDL 101 (219)
T PF05148_consen 30 ALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKK------RPKSLVIADFGCGDAKLAKAVP-NKH-KVHSFDL 101 (219)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCT------S-TTS-EEEES-TT-HHHHH---S----EEEEES
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHh------cCCCEEEEECCCchHHHHHhcc-cCc-eEEEeec
Confidence 3344444455555555555443333444444444444442 3456799999999999987542 223 4999998
Q ss_pred CHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 189 S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
-+ .+-....+|+...|.+++++|++|++.+|+.. ++..++.++.|+|||||.+.|.
T Consensus 102 va---------------------~n~~Vtacdia~vPL~~~svDv~VfcLSLMGT---n~~~fi~EA~RvLK~~G~L~IA 157 (219)
T PF05148_consen 102 VA---------------------PNPRVTACDIANVPLEDESVDVAVFCLSLMGT---NWPDFIREANRVLKPGGILKIA 157 (219)
T ss_dssp S----------------------SSTTEEES-TTS-S--TT-EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEE
T ss_pred cC---------------------CCCCEEEecCccCcCCCCceeEEEEEhhhhCC---CcHHHHHHHHheeccCcEEEEE
Confidence 52 22346779999999999999999999998763 6778999999999999999999
Q ss_pred ecC
Q 023787 269 ENI 271 (277)
Q Consensus 269 e~~ 271 (277)
|..
T Consensus 158 EV~ 160 (219)
T PF05148_consen 158 EVK 160 (219)
T ss_dssp EEG
T ss_pred Eec
Confidence 864
No 124
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.28 E-value=2e-11 Score=115.17 Aligned_cols=105 Identities=20% Similarity=0.176 Sum_probs=79.2
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
++.+|||+|||+|.++..++...+. +|+++|+|+.+++.|++++...++ ..++.++++|+.+. .+.++||+|+
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l-----~~~v~~~~~D~~~~-~~~~~fDlIv 211 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV-----TDRIQIIHSNWFEN-IEKQKFDFIV 211 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-----ccceeeeecchhhh-CcCCCccEEE
Confidence 3468999999999999988876543 899999999999999999876544 34678888887542 2346899999
Q ss_pred cchhhh--------------cCCh----------hhHHHHHHHHHhcCCCCcEEEE
Q 023787 236 VQWCIG--------------HLTD----------DDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 236 ~~~~l~--------------~~~~----------~d~~~~l~~~~r~LkpGG~lii 267 (277)
++.... |-|. +.+..+++.+.+.|+|||.+++
T Consensus 212 sNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 212 SNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred ECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 864211 1110 1245678889999999999987
No 125
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.26 E-value=1.2e-11 Score=103.46 Aligned_cols=101 Identities=22% Similarity=0.156 Sum_probs=76.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||||||+|..+..++..... .|+++|+.+...+.|++++...+. .++.+.++|......+.++||
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~------~nv~~~~gdg~~g~~~~apfD 143 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI------DNVEVVVGDGSEGWPEEAPFD 143 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT------HSEEEEES-GGGTTGGG-SEE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc------CceeEEEcchhhccccCCCcC
Confidence 668899999999999999977655332 699999999999999999986543 478999998766544557899
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.|++......+| ..+.+.|++||++++.-
T Consensus 144 ~I~v~~a~~~ip--------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 144 RIIVTAAVPEIP--------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp EEEESSBBSS----------HHHHHTEEEEEEEEEEE
T ss_pred EEEEeeccchHH--------HHHHHhcCCCcEEEEEE
Confidence 999998876555 23566799999999853
No 126
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.26 E-value=5.3e-11 Score=110.62 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=86.0
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PET 228 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~ 228 (277)
+.++.+|||+|||+|..+..++.... .+|+++|+++.+++.+++++...|+ .++.+++.|..+++ ...
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~------~~v~~~~~D~~~~~~~~~~~~ 323 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL------KSIKILAADSRNLLELKPQWR 323 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC------CeEEEEeCChhhccccccccc
Confidence 45778999999999999998887643 2799999999999999999887654 35888999988765 335
Q ss_pred CceeEEecc------hhhhcCCh-------hh-------HHHHHHHHHhcCCCCcEEEEEe
Q 023787 229 GRYDVIWVQ------WCIGHLTD-------DD-------FVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 229 ~~fD~Vi~~------~~l~~~~~-------~d-------~~~~l~~~~r~LkpGG~lii~e 269 (277)
++||.|++. .++++-++ .+ ...++.++.+.|||||+++.+.
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 689999953 34444332 11 3578999999999999998875
No 127
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.26 E-value=7.1e-11 Score=109.54 Aligned_cols=111 Identities=20% Similarity=0.094 Sum_probs=83.7
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC--CCCce
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRY 231 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~f 231 (277)
+.++.+|||+|||+|..+..+++... .+|+++|+|+.+++.+++++...++ ...+.+..+|...... +.++|
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~-----~~~v~~~~~d~~~~~~~~~~~~f 310 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL-----TIKAETKDGDGRGPSQWAENEQF 310 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC-----CeEEEEecccccccccccccccc
Confidence 55778999999999999998887654 3799999999999999999987554 2234446666654433 45689
Q ss_pred eEEecc------hhhhcCChh-------h-------HHHHHHHHHhcCCCCcEEEEEec
Q 023787 232 DVIWVQ------WCIGHLTDD-------D-------FVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 232 D~Vi~~------~~l~~~~~~-------d-------~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
|.|++. +++++.++- + ...+|.++.++|||||+++++..
T Consensus 311 D~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 311 DRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred CEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 999842 355554421 1 35799999999999999999854
No 128
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.24 E-value=7.3e-11 Score=110.03 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=83.5
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|||+|||+|..+..+++... .+|+++|+|+.+++.+++++...++ .++++.+.|+.++. ++++||
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~------~~v~~~~~Da~~~~-~~~~fD 320 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI------TIIETIEGDARSFS-PEEQPD 320 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC------CeEEEEeCcccccc-cCCCCC
Confidence 45678999999999999988876532 3799999999999999999877654 36888999988765 346899
Q ss_pred EEecc----h--hhh-------cCChhh-------HHHHHHHHHhcCCCCcEEEEEec
Q 023787 233 VIWVQ----W--CIG-------HLTDDD-------FVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 233 ~Vi~~----~--~l~-------~~~~~d-------~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+|++. . ++. +.+.++ ...+|.++.+.|||||+++++..
T Consensus 321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 99952 1 111 122222 24689999999999999999754
No 129
>PRK01581 speE spermidine synthase; Validated
Probab=99.24 E-value=7.3e-11 Score=105.30 Aligned_cols=115 Identities=21% Similarity=0.200 Sum_probs=81.0
Q ss_pred CCCccEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCCCCCC-CCCCcceeEEEcCCCCCC-CCCCcee
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMA-PDMHKATNFFCVPLQDFT-PETGRYD 232 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~-~~~~~fD 232 (277)
..+.+||++|||+|..+..+++.. ..+|++||+++.|++.|++...-..+.. ....++++++.+|..++. ...++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 456799999999999999888653 2489999999999999997321100000 011468899999887753 3346899
Q ss_pred EEecchhhh---cCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 233 VIWVQWCIG---HLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 233 ~Vi~~~~l~---~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+|++...-. ....---..+++.+++.|+|||++++...
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 999874311 11111125799999999999999988754
No 130
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.24 E-value=8.4e-11 Score=109.05 Aligned_cols=109 Identities=19% Similarity=0.136 Sum_probs=83.5
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCce
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY 231 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~f 231 (277)
..++.+|||+|||+|..+..+++... .+|+++|+|+.+++.+++++...++ ++.+++.|+.+.+ +..++|
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-------~~~~~~~D~~~~~~~~~~~~f 314 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-------KATVIVGDARDPAQWWDGQPF 314 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-------CeEEEEcCcccchhhcccCCC
Confidence 45778999999999999999988765 3799999999999999999877543 3578888987653 234689
Q ss_pred eEEecchh------hhcC-------Chhh-------HHHHHHHHHhcCCCCcEEEEEec
Q 023787 232 DVIWVQWC------IGHL-------TDDD-------FVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 232 D~Vi~~~~------l~~~-------~~~d-------~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
|.|++... +.+- ...+ ...++.++.+.|||||+++++..
T Consensus 315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 99994331 1111 1111 34789999999999999998753
No 131
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.24 E-value=2e-11 Score=105.41 Aligned_cols=130 Identities=15% Similarity=0.177 Sum_probs=95.3
Q ss_pred ccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcce
Q 023787 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214 (277)
Q Consensus 135 ~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~ 214 (277)
+.....++...+.... ..+...++|+|||-|.....+-+.+...++|+||+...++.|+++..+-........-.+
T Consensus 99 lRnfNNwIKs~LI~~y----~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a 174 (389)
T KOG1975|consen 99 LRNFNNWIKSVLINLY----TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTA 174 (389)
T ss_pred hhhhhHHHHHHHHHHH----hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhccccee
Confidence 3444455555554333 246678999999999999988888888999999999999999998764211111111246
Q ss_pred eEEEcCCCCC------CCCCCceeEEecchhhhcC--ChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 215 NFFCVPLQDF------TPETGRYDVIWVQWCIGHL--TDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 215 ~~~~~d~~~~------~~~~~~fD~Vi~~~~l~~~--~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.|+.+|-..- ++.+.+||+|-|.+++||. +.+....+++++.+.|+|||+||-+
T Consensus 175 ~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 175 VFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred EEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 7888875432 2344459999999999985 4555778999999999999999865
No 132
>PLN02366 spermidine synthase
Probab=99.23 E-value=8.5e-11 Score=103.95 Aligned_cols=111 Identities=18% Similarity=0.220 Sum_probs=82.6
Q ss_pred CCCccEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCcee
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD 232 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD 232 (277)
+++.+||+||||.|..+..+++.. ..+|+.||+++.+++.|++.+...+. ....++++++.+|...+. .++++||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~--~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAV--GFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhcc--ccCCCceEEEEChHHHHHhhccCCCCC
Confidence 457899999999999999888653 24899999999999999998864321 112468999999975542 2246899
Q ss_pred EEecchhhhcCChhh--HHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d--~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|++...-.+.+... -..+++.+++.|+|||++++.
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 999865433322111 347899999999999999764
No 133
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.23 E-value=5.7e-11 Score=103.68 Aligned_cols=110 Identities=16% Similarity=0.178 Sum_probs=80.3
Q ss_pred CCccEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeEE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~V 234 (277)
.+.+||+||||+|..+..+++.. ..+++++|+++.+++.+++.+...+. .....+++++..|..++. ..+++||+|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~--~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAG--SYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcc--cccCCceEEEECchHHHHHhCCCCccEE
Confidence 45699999999999999888765 45899999999999999998754221 111346777777765431 113689999
Q ss_pred ecchhhhcCChhh--HHHHHHHHHhcCCCCcEEEEE
Q 023787 235 WVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 235 i~~~~l~~~~~~d--~~~~l~~~~r~LkpGG~lii~ 268 (277)
++.......+... ...+++.+++.|+|||++++.
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 9865532222222 357899999999999999986
No 134
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.23 E-value=1.4e-10 Score=95.59 Aligned_cols=110 Identities=16% Similarity=0.143 Sum_probs=84.5
Q ss_pred cEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--C------CCCc
Q 023787 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--P------ETGR 230 (277)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~------~~~~ 230 (277)
+|||||||||..+.+++...+. ...-.|+.+..+.-.+......++.+... -+..|+...+ . ..++
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~-----P~~lDv~~~~w~~~~~~~~~~~~ 102 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRP-----PLALDVSAPPWPWELPAPLSPES 102 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCC-----CeEeecCCCCCccccccccCCCC
Confidence 6999999999999999988876 67778988888766666655554432222 1234444332 1 2468
Q ss_pred eeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 023787 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (277)
Q Consensus 231 fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (277)
||.|++.+++|-++++..+.+|+.+.++|+|||.|++--....+
T Consensus 103 ~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~ 146 (204)
T PF06080_consen 103 FDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRD 146 (204)
T ss_pred cceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccC
Confidence 99999999999999999999999999999999999997655443
No 135
>PHA03412 putative methyltransferase; Provisional
Probab=99.23 E-value=7.2e-11 Score=99.41 Aligned_cols=95 Identities=13% Similarity=0.123 Sum_probs=73.6
Q ss_pred CccEEEeeccccHHHHHHHHhC----CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 158 HLVALDCGSGIGRITKNLLIRY----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~----~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
+.+|||+|||+|.++..++.+. ..+|+++|+++.+++.|+++.. ++.+++.|+....+ +++||+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----------~~~~~~~D~~~~~~-~~~FDl 117 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----------EATWINADALTTEF-DTLFDM 117 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----------CCEEEEcchhcccc-cCCccE
Confidence 5799999999999999887653 2279999999999999998753 36788899877654 368999
Q ss_pred EecchhhhcCChh----------hHHHHHHHHHhcCCCCcE
Q 023787 234 IWVQWCIGHLTDD----------DFVSFFKRAKVGLKPGGF 264 (277)
Q Consensus 234 Vi~~~~l~~~~~~----------d~~~~l~~~~r~LkpGG~ 264 (277)
||++-.+.-.... -...++..+.++++||+.
T Consensus 118 IIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 118 AISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred EEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 9999876633211 145688999997777665
No 136
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=8.1e-11 Score=102.93 Aligned_cols=99 Identities=24% Similarity=0.256 Sum_probs=76.7
Q ss_pred cEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecch
Q 023787 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (277)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~ 238 (277)
+|||+|||+|..+..++...+. +|+++|+|+.+++.|++|...+++ .++.++..|+.+-. .++||+|++|-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l------~~~~~~~~dlf~~~--~~~fDlIVsNP 184 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL------VRVLVVQSDLFEPL--RGKFDLIVSNP 184 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC------ccEEEEeeeccccc--CCceeEEEeCC
Confidence 7999999999999999988775 899999999999999999988654 23444555544322 24899999885
Q ss_pred hhhcCChh-------------------------hHHHHHHHHHhcCCCCcEEEEE
Q 023787 239 CIGHLTDD-------------------------DFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 239 ~l~~~~~~-------------------------d~~~~l~~~~r~LkpGG~lii~ 268 (277)
. |++.+ -...++.++.+.|+|||.+++-
T Consensus 185 P--Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 185 P--YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred C--CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 4 12111 2567888999999999988875
No 137
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.22 E-value=7.9e-11 Score=102.42 Aligned_cols=110 Identities=15% Similarity=0.076 Sum_probs=83.7
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
+.++.+|||+|||+|..+..++.... ..|+++|+++.+++.+++++...++ .++.+.+.|...++...++||
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~------~~v~~~~~D~~~~~~~~~~fD 142 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV------LNVAVTNFDGRVFGAAVPKFD 142 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC------CcEEEecCCHHHhhhhccCCC
Confidence 45778999999999999998887643 2799999999999999999987654 357888888877654446799
Q ss_pred EEecch------hhhcCC-------hh-------hHHHHHHHHHhcCCCCcEEEEEec
Q 023787 233 VIWVQW------CIGHLT-------DD-------DFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 233 ~Vi~~~------~l~~~~-------~~-------d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
.|++.- ++.+-+ .+ ....+|+++.+.|||||+++.+..
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 998532 222111 11 124599999999999999998743
No 138
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.21 E-value=2.8e-11 Score=101.50 Aligned_cols=129 Identities=17% Similarity=0.217 Sum_probs=92.6
Q ss_pred HhhhcccccccccccccCCCCcccccccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeC
Q 023787 109 GISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188 (277)
Q Consensus 109 ~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~ 188 (277)
+.+.+..-+..|+.+..||......+...+...+...+.. ......|.|+|||.+.++. .-...|..+|+
T Consensus 138 A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~------r~~~~vIaD~GCGEakiA~----~~~~kV~SfDL 207 (325)
T KOG3045|consen 138 AFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKR------RPKNIVIADFGCGEAKIAS----SERHKVHSFDL 207 (325)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHh------CcCceEEEecccchhhhhh----ccccceeeeee
Confidence 3445554445555555555443333344444444444443 2456799999999998765 33446999997
Q ss_pred CHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 189 S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
- ..+-+++.+|+.+.|.++++.|+++++.+|+.. ++..++.++.|+|+|||.++|.
T Consensus 208 ~---------------------a~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgt---n~~df~kEa~RiLk~gG~l~IA 263 (325)
T KOG3045|consen 208 V---------------------AVNERVIACDMRNVPLEDESVDVAVFCLSLMGT---NLADFIKEANRILKPGGLLYIA 263 (325)
T ss_pred e---------------------cCCCceeeccccCCcCccCcccEEEeeHhhhcc---cHHHHHHHHHHHhccCceEEEE
Confidence 4 234567889999999999999999999988652 6788999999999999999999
Q ss_pred ecC
Q 023787 269 ENI 271 (277)
Q Consensus 269 e~~ 271 (277)
|.-
T Consensus 264 Ev~ 266 (325)
T KOG3045|consen 264 EVK 266 (325)
T ss_pred ehh
Confidence 864
No 139
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.21 E-value=3.2e-11 Score=118.09 Aligned_cols=110 Identities=15% Similarity=0.179 Sum_probs=85.1
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~Vi 235 (277)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++..+++. ..+++++++|+.++. ...++||+|+
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~----~~~v~~i~~D~~~~l~~~~~~fDlIi 613 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLS----GRQHRLIQADCLAWLKEAREQFDLIF 613 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----ccceEEEEccHHHHHHHcCCCcCEEE
Confidence 46799999999999999988776668999999999999999999876651 136899999976542 1136899999
Q ss_pred cchhhh-c------C--ChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 236 VQWCIG-H------L--TDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 236 ~~~~l~-~------~--~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+..... . . ...+...++..+.++|+|||.+++.-+
T Consensus 614 lDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 614 IDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred ECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 864311 0 0 012567789999999999999988644
No 140
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.21 E-value=1.1e-10 Score=97.50 Aligned_cols=121 Identities=21% Similarity=0.309 Sum_probs=92.9
Q ss_pred cchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCC-C-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcc
Q 023787 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (277)
Q Consensus 136 ~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~-~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~ 213 (277)
+....++..++. ...+.+|||||.+.|..+.+++...+ + +++.+|+++++.+.|+++++..|+ ..+
T Consensus 45 ~e~g~~L~~L~~-------~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~-----~~~ 112 (219)
T COG4122 45 PETGALLRLLAR-------LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV-----DDR 112 (219)
T ss_pred hhHHHHHHHHHH-------hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC-----cce
Confidence 444556666554 34678999999999999999998766 2 899999999999999999998877 455
Q ss_pred eeEEE-cCCCCCC--CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 023787 214 TNFFC-VPLQDFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (277)
Q Consensus 214 ~~~~~-~d~~~~~--~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (277)
+..+. +|..+.- ...++||+|+.-.. ..+...++..+.++|+|||.+++ ||+--.
T Consensus 113 i~~~~~gdal~~l~~~~~~~fDliFIDad-----K~~yp~~le~~~~lLr~GGliv~-DNvl~~ 170 (219)
T COG4122 113 IELLLGGDALDVLSRLLDGSFDLVFIDAD-----KADYPEYLERALPLLRPGGLIVA-DNVLFG 170 (219)
T ss_pred EEEEecCcHHHHHHhccCCCccEEEEeCC-----hhhCHHHHHHHHHHhCCCcEEEE-eecccC
Confidence 77777 3544332 23589999987654 34667899999999999998876 565433
No 141
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.20 E-value=6.2e-11 Score=108.40 Aligned_cols=110 Identities=17% Similarity=0.147 Sum_probs=83.7
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCCCcee
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD 232 (277)
++.+|||+|||+|.++...+..+..+|+++|+|+.+++.|++++..+++. ..+++++++|+.++. ...++||
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~----~~~v~~i~~D~~~~l~~~~~~~~~fD 295 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD----LSKAEFVRDDVFKLLRTYRDRGEKFD 295 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CCcEEEEEccHHHHHHHHHhcCCCCC
Confidence 46799999999999998766666668999999999999999999876651 136889999987652 1235899
Q ss_pred EEecchhhhcCCh-------hhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 233 VIWVQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 233 ~Vi~~~~l~~~~~-------~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+|++......-+. ..+..++..+.++|+|||.++..-+
T Consensus 296 lVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred EEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9998855311111 1355677788999999999987543
No 142
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.18 E-value=2.1e-10 Score=107.02 Aligned_cols=108 Identities=18% Similarity=0.142 Sum_probs=82.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCc
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGR 230 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~--~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~ 230 (277)
..++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++...++ .++++++.|+.++. ++ ++
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~------~~v~~~~~D~~~~~~~~~-~~ 320 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL------TNIETKALDARKVHEKFA-EK 320 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCCcccccchhc-cc
Confidence 4567899999999999999888764 23799999999999999999877654 34889999988763 23 68
Q ss_pred eeEEecchh------hhcCC-------hhh-------HHHHHHHHHhcCCCCcEEEEEe
Q 023787 231 YDVIWVQWC------IGHLT-------DDD-------FVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 231 fD~Vi~~~~------l~~~~-------~~d-------~~~~l~~~~r~LkpGG~lii~e 269 (277)
||+|++... +.+-| ..+ ...++.++.++|||||.++.+.
T Consensus 321 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 321 FDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred CCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 999996532 11111 111 2468999999999999999764
No 143
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.18 E-value=1.4e-10 Score=107.47 Aligned_cols=110 Identities=12% Similarity=0.060 Sum_probs=84.1
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCce
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~--~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~f 231 (277)
+.++.+|||+|||+|..+..++... ..+|+++|+|+.+++.+++++...++ .++.+.+.|..+++ +.+++|
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~------~~v~~~~~Da~~l~~~~~~~f 308 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL------SSIEIKIADAERLTEYVQDTF 308 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhhhhhhhhccC
Confidence 5577899999999999999888764 23799999999999999999887654 35788899988765 335689
Q ss_pred eEEecch------hhhcCC-------hh-------hHHHHHHHHHhcCCCCcEEEEEec
Q 023787 232 DVIWVQW------CIGHLT-------DD-------DFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 232 D~Vi~~~------~l~~~~-------~~-------d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
|.|++.. ++..-+ .+ ...++|.++.+.|||||+++++..
T Consensus 309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 367 (431)
T PRK14903 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC 367 (431)
T ss_pred CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 9999532 222111 11 235679999999999999988743
No 144
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.18 E-value=2.8e-11 Score=99.91 Aligned_cols=102 Identities=18% Similarity=0.330 Sum_probs=89.4
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
....++|||||-|.....+...+..+++-+|.|..|++.++..-.. .....+...|-+.+++.++++|+|++
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp--------~i~~~~~v~DEE~Ldf~ens~DLiis 143 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDP--------SIETSYFVGDEEFLDFKENSVDLIIS 143 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCC--------ceEEEEEecchhcccccccchhhhhh
Confidence 3457999999999999999988988999999999999988764321 34577788899999999999999999
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+..+|++. ++...+.+|+..|||+|.|+-+
T Consensus 144 SlslHW~N--dLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 144 SLSLHWTN--DLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhhhhhc--cCchHHHHHHHhcCCCccchhH
Confidence 99999988 8889999999999999998754
No 145
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.18 E-value=1e-10 Score=102.08 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=86.0
Q ss_pred CCccEEEeeccccHH----HHHHHHhC-----CCcEEEEeCCHHHHHHHHHHhCC-----------------------CC
Q 023787 157 QHLVALDCGSGIGRI----TKNLLIRY-----FNEVDLLEPVSHFLDAARESLAP-----------------------EN 204 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~----s~~l~~~~-----~~~v~gvD~S~~~l~~a~~~~~~-----------------------~~ 204 (277)
...+|+..||+||.- +..+.+.. .-+|+|+|+|+.+++.|++-.=. .+
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 348999999999963 33233321 11799999999999999875200 00
Q ss_pred C--CCCCCCcceeEEEcCCCCCCCC-CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE--ecC
Q 023787 205 H--MAPDMHKATNFFCVPLQDFTPE-TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK--ENI 271 (277)
Q Consensus 205 ~--~~~~~~~~~~~~~~d~~~~~~~-~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~--e~~ 271 (277)
. ........+.|...|+.+.+++ .+.||+|+|.+++.|++++....+++++++.|+|||+|++. |.+
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sEsl 266 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSENF 266 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCcccc
Confidence 0 0112346788999999875533 57899999999999999888999999999999999999885 444
No 146
>PLN02476 O-methyltransferase
Probab=99.16 E-value=2.5e-10 Score=99.02 Aligned_cols=105 Identities=15% Similarity=0.123 Sum_probs=84.7
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--C----C
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--P----E 227 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~----~ 227 (277)
.++.+|||||+|+|..+..++..... +|+.+|.+++..+.|+++++..|+ ..+++++.+|+.+.. . .
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl-----~~~I~li~GdA~e~L~~l~~~~~ 191 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV-----SHKVNVKHGLAAESLKSMIQNGE 191 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHHHHHHHHhccc
Confidence 35689999999999999988865332 699999999999999999998776 457999999876532 1 1
Q ss_pred CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
.++||+|+.-.. ..+...++..+.++|+|||.+++ ||+
T Consensus 192 ~~~FD~VFIDa~-----K~~Y~~y~e~~l~lL~~GGvIV~-DNv 229 (278)
T PLN02476 192 GSSYDFAFVDAD-----KRMYQDYFELLLQLVRVGGVIVM-DNV 229 (278)
T ss_pred CCCCCEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEE-ecC
Confidence 368999987654 34677899999999999999776 565
No 147
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.16 E-value=1.7e-10 Score=97.80 Aligned_cols=95 Identities=22% Similarity=0.315 Sum_probs=76.6
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
...++||||+|.|..+..++ ..+.+|++.|.|+.|....+++- |.+.+..++...+.+||+|.|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~-~~f~~v~aTE~S~~Mr~rL~~kg---------------~~vl~~~~w~~~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLA-PLFKEVYATEASPPMRWRLSKKG---------------FTVLDIDDWQQTDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHH-hhcceEEeecCCHHHHHHHHhCC---------------CeEEehhhhhccCCceEEEee
Confidence 56789999999999999886 56778999999999988776641 122333344434468999999
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.+++.... +...+|+.+++.|+|+|+++++=
T Consensus 158 LNvLDRc~--~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 158 LNVLDRCD--RPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred hhhhhccC--CHHHHHHHHHHHhCCCCEEEEEE
Confidence 99999877 66699999999999999999863
No 148
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.14 E-value=1.2e-10 Score=97.10 Aligned_cols=104 Identities=17% Similarity=0.286 Sum_probs=83.5
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC------CCC
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PET 228 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~ 228 (277)
.+.+||||||++|..+..++...+. +|+.+|+++...+.|++.+...|+ ..+++++.+|..+.- .+.
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~-----~~~I~~~~gda~~~l~~l~~~~~~ 119 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL-----DDRIEVIEGDALEVLPELANDGEE 119 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG-----GGGEEEEES-HHHHHHHHHHTTTT
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC-----CCcEEEEEeccHhhHHHHHhccCC
Confidence 5679999999999999999976553 899999999999999999988766 568999999876531 113
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
++||+|+.-.. ..+...++..+.++|+|||.+++ ||+
T Consensus 120 ~~fD~VFiDa~-----K~~y~~y~~~~~~ll~~ggvii~-DN~ 156 (205)
T PF01596_consen 120 GQFDFVFIDAD-----KRNYLEYFEKALPLLRPGGVIIA-DNV 156 (205)
T ss_dssp TSEEEEEEEST-----GGGHHHHHHHHHHHEEEEEEEEE-ETT
T ss_pred CceeEEEEccc-----ccchhhHHHHHhhhccCCeEEEE-ccc
Confidence 58999997664 34677889999999999999877 443
No 149
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.13 E-value=2.9e-10 Score=94.46 Aligned_cols=105 Identities=16% Similarity=0.125 Sum_probs=79.2
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~Vi 235 (277)
++.+|||+|||+|.++..++.++..+|+++|.++.+++.+++++...+. .++.+++.|+.+.. ....+||+|+
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~------~~v~~~~~D~~~~l~~~~~~fDlV~ 126 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA------GNARVVNTNALSFLAQPGTPHNVVF 126 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC------CcEEEEEchHHHHHhhcCCCceEEE
Confidence 4579999999999999877767777899999999999999999877543 35888888876542 1234799999
Q ss_pred cchhhhcCChhhHHHHHHHHHh--cCCCCcEEEEEec
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVLKEN 270 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r--~LkpGG~lii~e~ 270 (277)
+.-.+.. . -...+++.+.. .|+|+|++++..+
T Consensus 127 ~DPPy~~-g--~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 127 VDPPFRK-G--LLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred ECCCCCC-C--hHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 9988532 1 23345555554 4899998888643
No 150
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.13 E-value=1.8e-10 Score=101.06 Aligned_cols=105 Identities=20% Similarity=0.208 Sum_probs=86.6
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++..|||+|||||.++...++.|+.+|++||.|. +.+.|++.+..+++ ...++++.+.+++...|..++|+|++
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~-----~~ii~vi~gkvEdi~LP~eKVDiIvS 133 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGL-----EDVITVIKGKVEDIELPVEKVDIIVS 133 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCc-----cceEEEeecceEEEecCccceeEEee
Confidence 5789999999999999999989988999999886 45999999988877 45788999988888766679999998
Q ss_pred chhhhcCC-hhhHHHHHHHHHhcCCCCcEEEE
Q 023787 237 QWCIGHLT-DDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 237 ~~~l~~~~-~~d~~~~l~~~~r~LkpGG~lii 267 (277)
-|.=+.+- ..-+..++-.=-+.|+|||.++=
T Consensus 134 EWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 134 EWMGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred hhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 87644432 22456777777899999999864
No 151
>PRK03612 spermidine synthase; Provisional
Probab=99.12 E-value=3.6e-10 Score=107.20 Aligned_cols=113 Identities=19% Similarity=0.146 Sum_probs=81.4
Q ss_pred CCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCC-CCCCcceeEEEcCCCCCC-CCCCcee
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMA-PDMHKATNFFCVPLQDFT-PETGRYD 232 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~-~~~~~fD 232 (277)
+++.+|||+|||+|..+..+++... .+++++|+++++++.++++..-..+.. ...+++++++..|..++. ..+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4568999999999999998886544 589999999999999998432111100 011357889999987642 2346899
Q ss_pred EEecchhhhcCChh---hHHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDD---DFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~---d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|++.......+.. --.++++.+++.|||||++++.
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 99998543322210 1236899999999999999885
No 152
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.11 E-value=4.5e-10 Score=104.70 Aligned_cols=103 Identities=19% Similarity=0.172 Sum_probs=79.0
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCCCc
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGR 230 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~ 230 (277)
..++.+|||+|||+|.++..++... .+|+++|+|+.|++.|++++..+++ .+++|+++|+.+.. +.+++
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~------~~v~~~~~d~~~~l~~~~~~~~~ 367 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGL------DNVTFYHANLEEDFTDQPWALGG 367 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEeChHHhhhhhhhhcCC
Confidence 3466799999999999999888665 5799999999999999999876543 36899999986532 33468
Q ss_pred eeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 231 fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
||+|++...-.- ....+..+.+ ++|+++++++-|
T Consensus 368 fD~Vi~dPPr~g-----~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 368 FDKVLLDPPRAG-----AAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred CCEEEECcCCcC-----hHHHHHHHHh-cCCCeEEEEEeC
Confidence 999998765332 2245555555 699999999854
No 153
>PLN02672 methionine S-methyltransferase
Probab=99.10 E-value=5.5e-10 Score=112.11 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=80.9
Q ss_pred CccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCC----------CCCCCcceeEEEcCCCCCCC
Q 023787 158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHM----------APDMHKATNFFCVPLQDFTP 226 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~----------~~~~~~~~~~~~~d~~~~~~ 226 (277)
+.+|||+|||+|.++..++.... .+|+++|+|+.+++.|++|...+++. +.....+++|+++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999988765 38999999999999999998765432 00112468999999876542
Q ss_pred C-CCceeEEecchhhh------cCC--------------------------hhh----HHHHHHHHHhcCCCCcEEEE
Q 023787 227 E-TGRYDVIWVQWCIG------HLT--------------------------DDD----FVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 227 ~-~~~fD~Vi~~~~l~------~~~--------------------------~~d----~~~~l~~~~r~LkpGG~lii 267 (277)
. ..+||+|+++-..- .+. .++ ...++.++.++|+|||++++
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 2 13799999874310 000 011 36678888899999999886
No 154
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.08 E-value=1.4e-09 Score=85.75 Aligned_cols=116 Identities=17% Similarity=0.187 Sum_probs=94.3
Q ss_pred HHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeE
Q 023787 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (277)
Q Consensus 139 ~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~ 216 (277)
...+.+.+..... ...+.-|||+|.|||.+++.+++++.. .++.+|.|+.+.....+.+.+ +++
T Consensus 33 Ss~lA~~M~s~I~---pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~-----------~~i 98 (194)
T COG3963 33 SSILARKMASVID---PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG-----------VNI 98 (194)
T ss_pred cHHHHHHHHhccC---cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC-----------ccc
Confidence 3444444443333 567789999999999999999998765 899999999999999998766 456
Q ss_pred EEcCCCCCC-----CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 217 FCVPLQDFT-----PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 217 ~~~d~~~~~-----~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+.+|..++. .....||.|+|.-.+-.+|.....++++.+...|.+||.++-.
T Consensus 99 i~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 99 INGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred cccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 777766654 4456899999999999998777889999999999999988864
No 155
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=1e-09 Score=92.62 Aligned_cols=102 Identities=22% Similarity=0.244 Sum_probs=86.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHh-CC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIR-YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|+|.|.|+|.++..|+.. ++ .+|+.+|+-+.+.+.|++|+...++ ..++.+...|+.+...++ .||
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l-----~d~v~~~~~Dv~~~~~~~-~vD 165 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL-----GDRVTLKLGDVREGIDEE-DVD 165 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc-----ccceEEEecccccccccc-ccC
Confidence 678999999999999999999864 33 2899999999999999999988766 445888889998887665 899
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+|+.-. + +.-.++..+.++|||||.+++--
T Consensus 166 av~LDm-----p--~PW~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 166 AVFLDL-----P--DPWNVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred EEEEcC-----C--ChHHHHHHHHHHhCCCcEEEEEc
Confidence 998654 3 66689999999999999998853
No 156
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.07 E-value=5.9e-10 Score=92.48 Aligned_cols=106 Identities=18% Similarity=0.180 Sum_probs=81.2
Q ss_pred CccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC---CCCCceeE
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDV 233 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~ 233 (277)
...+||||||.|.+...++...+. .++|+|++...+..+.++....++ .|+.++++|+..+. ++++++|-
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l------~Nv~~~~~da~~~l~~~~~~~~v~~ 91 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL------KNVRFLRGDARELLRRLFPPGSVDR 91 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT------SSEEEEES-CTTHHHHHSTTTSEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc------cceEEEEccHHHHHhhcccCCchhe
Confidence 348999999999999999999887 899999999999999888776554 78999999988742 45689999
Q ss_pred EecchhhhcCChhh------HHHHHHHHHhcCCCCcEEEEEe
Q 023787 234 IWVQWCIGHLTDDD------FVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 234 Vi~~~~l~~~~~~d------~~~~l~~~~r~LkpGG~lii~e 269 (277)
|+.++.=-+..... -..++..++++|+|||.|.+..
T Consensus 92 i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 92 IYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp EEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 99887533322111 3579999999999999999863
No 157
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.06 E-value=1.1e-09 Score=91.22 Aligned_cols=110 Identities=21% Similarity=0.246 Sum_probs=76.6
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCC-----CC---------------C-------
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPEN-----HM---------------A------- 207 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~-----~~---------------~------- 207 (277)
..+..+|||||..|.++..+++.+.. .|.|+||.+..+..|++++...- .. +
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 35678999999999999999977544 89999999999999999875310 00 0
Q ss_pred --CCCCccee-------EEEcCCCCCCCCCCceeEEecchhh--hcCC--hhhHHHHHHHHHhcCCCCcEEEE
Q 023787 208 --PDMHKATN-------FFCVPLQDFTPETGRYDVIWVQWCI--GHLT--DDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 208 --~~~~~~~~-------~~~~d~~~~~~~~~~fD~Vi~~~~l--~~~~--~~d~~~~l~~~~r~LkpGG~lii 267 (277)
..+..++. +...|+.+ .....||+|+|..+- -|+. |+-+..+|+++.++|.|||+|++
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~--~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLD--MIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred ccccCCcchhcccccEEEecchhhh--hccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 00000111 11122221 234589999876543 2443 55699999999999999999987
No 158
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.05 E-value=6e-10 Score=90.79 Aligned_cols=110 Identities=18% Similarity=0.117 Sum_probs=74.4
Q ss_pred CCCCccEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETG 229 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~ 229 (277)
...+.+|||+|||+|..+..++.. +..+|+..|.++ .++.++.++..++. ....++.+...+..+.. .+..
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~---~~~~~v~v~~L~Wg~~~~~~~~~~~ 118 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS---LLDGRVSVRPLDWGDELDSDLLEPH 118 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-----------EEEE--TTS-HHHHHHS-S
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc---cccccccCcEEEecCcccccccccc
Confidence 346789999999999999988766 456899999999 99999999877541 11345677777765521 2346
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+||+|+++.++.. ++....+++.+.++|+|+|.++++..
T Consensus 119 ~~D~IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 119 SFDVILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp SBSEEEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred cCCEEEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 8999999999986 34788999999999999999887754
No 159
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.05 E-value=9.2e-10 Score=98.17 Aligned_cols=102 Identities=13% Similarity=0.044 Sum_probs=76.8
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC-CCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~Vi 235 (277)
++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++++...++ .+++|+++|+.++.. ..++||+|+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l------~~v~~~~~D~~~~~~~~~~~~D~Vv 245 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGL------TNVQFQALDSTQFATAQGEVPDLVL 245 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEcCHHHHHHhcCCCCeEEE
Confidence 45799999999999999998765 4799999999999999999877554 468999999977642 235799999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+...-.-+. ..++ +....++|+++++++-+
T Consensus 246 ~dPPr~G~~----~~~~-~~l~~~~~~~ivyvsc~ 275 (315)
T PRK03522 246 VNPPRRGIG----KELC-DYLSQMAPRFILYSSCN 275 (315)
T ss_pred ECCCCCCcc----HHHH-HHHHHcCCCeEEEEECC
Confidence 885522221 1233 33344789999988754
No 160
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=6.4e-10 Score=89.67 Aligned_cols=76 Identities=20% Similarity=0.266 Sum_probs=65.6
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
-.+.+|+|+|||||.++...+..++.+|+++|+.+++++.++++.... ..+++|.++|+.++. +.||.++
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l-------~g~v~f~~~dv~~~~---~~~dtvi 113 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL-------LGDVEFVVADVSDFR---GKFDTVI 113 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh-------CCceEEEEcchhhcC---CccceEE
Confidence 356789999999999999888888889999999999999999998762 356999999999976 6789999
Q ss_pred cchhhh
Q 023787 236 VQWCIG 241 (277)
Q Consensus 236 ~~~~l~ 241 (277)
++..+.
T Consensus 114 mNPPFG 119 (198)
T COG2263 114 MNPPFG 119 (198)
T ss_pred ECCCCc
Confidence 886553
No 161
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.03 E-value=2.1e-09 Score=92.78 Aligned_cols=116 Identities=21% Similarity=0.312 Sum_probs=87.3
Q ss_pred CCccEEEeeccccH----HHHHHHHhCC-----C-cEEEEeCCHHHHHHHHHHhCC---------------------CC-
Q 023787 157 QHLVALDCGSGIGR----ITKNLLIRYF-----N-EVDLLEPVSHFLDAARESLAP---------------------EN- 204 (277)
Q Consensus 157 ~~~~VLDiGcGtG~----~s~~l~~~~~-----~-~v~gvD~S~~~l~~a~~~~~~---------------------~~- 204 (277)
...+|+-.||+||. ++..+.+.++ . +|+++|+|..+|+.|+.-.=. .+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 47899999999995 3443444332 2 899999999999999753211 00
Q ss_pred CC-CCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE--ecCC
Q 023787 205 HM-APDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK--ENIA 272 (277)
Q Consensus 205 ~~-~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~--e~~~ 272 (277)
.. .......+.|...|+.+-.+..+.||+|+|.+|+.|++.+....++..++..|+|||+|++- |.+.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE~~~ 246 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSETIP 246 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCcccC
Confidence 00 11123567888888877663447899999999999999888999999999999999999995 6554
No 162
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.02 E-value=1.8e-09 Score=92.46 Aligned_cols=104 Identities=14% Similarity=0.166 Sum_probs=83.5
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC-------C
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-------E 227 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------~ 227 (277)
+..+|||||+++|..+..++...+. +|+.+|.++...+.|++++...|+ ..+++++.++..+... .
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~-----~~~I~~~~G~a~e~L~~l~~~~~~ 153 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV-----AHKIDFREGPALPVLDQMIEDGKY 153 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----CCceEEEeccHHHHHHHHHhcccc
Confidence 5679999999999999988865433 899999999999999999998776 4678999998765421 1
Q ss_pred CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
.++||+|+.-.- ......++..+.+.|+|||.+++ ||+
T Consensus 154 ~~~fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~-DNv 191 (247)
T PLN02589 154 HGTFDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGY-DNT 191 (247)
T ss_pred CCcccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEE-cCC
Confidence 268999997644 33566888999999999999665 654
No 163
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.93 E-value=2.7e-09 Score=98.97 Aligned_cols=103 Identities=16% Similarity=0.147 Sum_probs=75.9
Q ss_pred CccEEEeeccccHHHHHHHHhC-----CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 158 HLVALDCGSGIGRITKNLLIRY-----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~-----~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
+..|+|+|||+|.++...++.+ ..+|++||-|+.+....+++...++. ..+++++.+|++++..+ .++|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w-----~~~V~vi~~d~r~v~lp-ekvD 260 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW-----GDKVTVIHGDMREVELP-EKVD 260 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT-----TTTEEEEES-TTTSCHS-S-EE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC-----CCeEEEEeCcccCCCCC-Ccee
Confidence 5789999999999988776654 34899999999888887776555444 46799999999999876 4999
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEE
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (277)
+|||-+.=.....+-....|..+.|.|||||+++
T Consensus 261 IIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 261 IIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 9998665333333445678899999999999876
No 164
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.93 E-value=7.9e-10 Score=101.30 Aligned_cols=147 Identities=19% Similarity=0.207 Sum_probs=89.4
Q ss_pred HHhhhcccccccccccccCCCCcccccccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCc--EEE
Q 023787 108 EGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNE--VDL 185 (277)
Q Consensus 108 ~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~--v~g 185 (277)
++.+-|-......-.+-++ +.........+-+.+.+.+..... ...-..+||+|||+|.++.+|+.++... +.-
T Consensus 72 K~~qnWv~~~gd~~~FPgg-gt~F~~Ga~~Yid~i~~~~~~~~~---~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~ 147 (506)
T PF03141_consen 72 KADQNWVRVEGDKFRFPGG-GTMFPHGADHYIDQIAEMIPLIKW---GGGIRTALDVGCGVASFGAYLLERNVTTMSFAP 147 (506)
T ss_pred cccccceeecCCEEEeCCC-CccccCCHHHHHHHHHHHhhcccc---CCceEEEEeccceeehhHHHHhhCCceEEEccc
Confidence 3445565544333222222 223323333444445555442211 3344578999999999999999886541 122
Q ss_pred EeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEE
Q 023787 186 LEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFF 265 (277)
Q Consensus 186 vD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~l 265 (277)
-|..+.+++.|-++--. .-+-...-..+|+++++||+|.|+.++..-...+ .-+|-++.|+|+|||++
T Consensus 148 ~d~~~~qvqfaleRGvp-----------a~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~-g~~l~evdRvLRpGGyf 215 (506)
T PF03141_consen 148 NDEHEAQVQFALERGVP-----------AMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPND-GFLLFEVDRVLRPGGYF 215 (506)
T ss_pred ccCCchhhhhhhhcCcc-----------hhhhhhccccccCCccchhhhhcccccccchhcc-cceeehhhhhhccCceE
Confidence 25555667777655211 1111233467889999999999999876544333 35899999999999999
Q ss_pred EEEec
Q 023787 266 VLKEN 270 (277)
Q Consensus 266 ii~e~ 270 (277)
+.+-.
T Consensus 216 v~S~p 220 (506)
T PF03141_consen 216 VLSGP 220 (506)
T ss_pred EecCC
Confidence 99743
No 165
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.92 E-value=5.3e-09 Score=97.26 Aligned_cols=104 Identities=16% Similarity=0.120 Sum_probs=77.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC----CCCCCc
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETGR 230 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~ 230 (277)
..++.+|||+|||+|.++..++.. ..+|+++|+|+.|++.|++++..+++ .+++|+.+|+.+. ....++
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~------~nv~~~~~d~~~~l~~~~~~~~~ 362 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGI------ANVEFLAGTLETVLPKQPWAGQI 362 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCC------CceEEEeCCHHHHHHHHHhcCCC
Confidence 345679999999999999988865 45799999999999999999876554 4689999998653 123457
Q ss_pred eeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 231 fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
||+|++...-..+ ...+++.+.+ ++|++.++++-+
T Consensus 363 ~D~vi~dPPr~G~----~~~~l~~l~~-l~~~~ivyvsc~ 397 (431)
T TIGR00479 363 PDVLLLDPPRKGC----AAEVLRTIIE-LKPERIVYVSCN 397 (431)
T ss_pred CCEEEECcCCCCC----CHHHHHHHHh-cCCCEEEEEcCC
Confidence 9999976552221 1255665554 899999888743
No 166
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.92 E-value=6.5e-09 Score=94.82 Aligned_cols=102 Identities=12% Similarity=0.035 Sum_probs=77.9
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC-CCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~Vi 235 (277)
++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.|+++...++. .+++|+++|+.++.. ...+||+|+
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~------~~~~~~~~d~~~~~~~~~~~~D~vi 305 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGL------DNLSFAALDSAKFATAQMSAPELVL 305 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHHHHHHhcCCCCCEEE
Confidence 44689999999999999888665 5799999999999999999877554 368899999876432 124699999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+.-.-..+. ..+++.+. .++|+++++++-+
T Consensus 306 ~DPPr~G~~----~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 306 VNPPRRGIG----KELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred ECCCCCCCc----HHHHHHHH-hcCCCeEEEEEeC
Confidence 887643332 24555554 4799999999854
No 167
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.90 E-value=7.4e-09 Score=85.54 Aligned_cols=104 Identities=15% Similarity=0.024 Sum_probs=75.9
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-C-C-CCC-cee
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T-P-ETG-RYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~-~~~-~fD 232 (277)
.+.++||++||+|.++..++.++...|+++|.++.+++.+++++...+. ..++++++.|+.+. . . ... .||
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~-----~~~~~~~~~D~~~~l~~~~~~~~~~d 123 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKS-----GEQAEVVRNSALRALKFLAKKPTFDN 123 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----cccEEEEehhHHHHHHHhhccCCCce
Confidence 4679999999999999999999888899999999999999999877654 23578888888543 1 1 122 478
Q ss_pred EEecchhhhcCChhhHHHHHHHHH--hcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAK--VGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~--r~LkpGG~lii~ 268 (277)
+|+.-..+..- ....++..+. .+|+++|.+++-
T Consensus 124 vv~~DPPy~~~---~~~~~l~~l~~~~~l~~~~iiv~E 158 (189)
T TIGR00095 124 VIYLDPPFFNG---ALQALLELCENNWILEDTVLIVVE 158 (189)
T ss_pred EEEECcCCCCC---cHHHHHHHHHHCCCCCCCeEEEEE
Confidence 88876665431 2334444443 468888876664
No 168
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.90 E-value=7.9e-09 Score=91.69 Aligned_cols=83 Identities=12% Similarity=0.073 Sum_probs=62.0
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCC-CCCCCCCCcceeEEE-cCCCCCC----CCCC
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFC-VPLQDFT----PETG 229 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~-~d~~~~~----~~~~ 229 (277)
...+|||||||+|.+...++.+.+. +++|+|+++.+++.|++++..+ ++ ..++.+.. .+..++. .+.+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l-----~~~I~~~~~~~~~~i~~~i~~~~~ 188 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL-----NGAIRLRLQKDSKAIFKGIIHKNE 188 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC-----cCcEEEEEccchhhhhhcccccCC
Confidence 5689999999999888877766443 7999999999999999999886 45 34566653 2322221 2346
Q ss_pred ceeEEecchhhhcCC
Q 023787 230 RYDVIWVQWCIGHLT 244 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~ 244 (277)
+||+|+|+-.++--.
T Consensus 189 ~fDlivcNPPf~~s~ 203 (321)
T PRK11727 189 RFDATLCNPPFHASA 203 (321)
T ss_pred ceEEEEeCCCCcCcc
Confidence 899999999877543
No 169
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.90 E-value=2.6e-08 Score=86.40 Aligned_cols=77 Identities=13% Similarity=0.110 Sum_probs=64.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|.++..+++.. .+|+++|+++.|++.+++++.. ..+++++++|+.+++++ .||.|
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~--------~~~v~ii~~D~~~~~~~--~~d~V 95 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA--------AGNVEIIEGDALKVDLP--EFNKV 95 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc--------CCCEEEEEeccccCCch--hceEE
Confidence 3467899999999999999999874 4699999999999999998754 25689999999887765 48999
Q ss_pred ecchhhhc
Q 023787 235 WVQWCIGH 242 (277)
Q Consensus 235 i~~~~l~~ 242 (277)
+++...+.
T Consensus 96 v~NlPy~i 103 (258)
T PRK14896 96 VSNLPYQI 103 (258)
T ss_pred EEcCCccc
Confidence 99877543
No 170
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.88 E-value=7.9e-09 Score=87.34 Aligned_cols=104 Identities=17% Similarity=0.192 Sum_probs=85.2
Q ss_pred ccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC---CCCCceeEE
Q 023787 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDVI 234 (277)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~V 234 (277)
..+||||||.|.+...+|.+.+. .+.|||+....+..|.+++...++ .|+.+++.|+..+. +++++.|-|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l------~Nlri~~~DA~~~l~~~~~~~sl~~I 123 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL------KNLRLLCGDAVEVLDYLIPDGSLDKI 123 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC------CcEEEEcCCHHHHHHhcCCCCCeeEE
Confidence 57999999999999999999887 899999999999999988877654 38999999887653 455699999
Q ss_pred ecchhhhcCCh------hhHHHHHHHHHhcCCCCcEEEEE
Q 023787 235 WVQWCIGHLTD------DDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 235 i~~~~l~~~~~------~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+.++.=-+... --...+++.+.+.|+|||.|.+.
T Consensus 124 ~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 124 YINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 98876433211 01357999999999999999986
No 171
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.88 E-value=9.4e-09 Score=89.48 Aligned_cols=105 Identities=21% Similarity=0.190 Sum_probs=84.0
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
-.+..|||+|||+|.++...+..+..+|.+|+.| +|.+.|++..+.+.+ ..++..+.+-++++..+ ++.|+||
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~-----~~rItVI~GKiEdieLP-Ek~DviI 248 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNL-----ADRITVIPGKIEDIELP-EKVDVII 248 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCc-----cceEEEccCccccccCc-hhccEEE
Confidence 3567899999999999998888899999999986 699999999988766 67899999999998877 5899999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
+-..-..+-++...+..-.+++.|||.|.++-
T Consensus 249 SEPMG~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 249 SEPMGYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred eccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 86543333334444445556799999999874
No 172
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.88 E-value=1.7e-08 Score=85.70 Aligned_cols=109 Identities=21% Similarity=0.218 Sum_probs=79.5
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-----CCCCCc
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-----TPETGR 230 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~ 230 (277)
.+..|||+|||+|..+..++...+. .|+++|.|+.++..|.+|+...++ ...+..+..+++.. +...++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l-----~g~i~v~~~~me~d~~~~~~l~~~~ 222 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL-----SGRIEVIHNIMESDASDEHPLLEGK 222 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh-----cCceEEEecccccccccccccccCc
Confidence 4558999999999999999877665 899999999999999999887665 34455554444322 233589
Q ss_pred eeEEecchhhhcCC------------------------hhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 231 YDVIWVQWCIGHLT------------------------DDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 231 fD~Vi~~~~l~~~~------------------------~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+|+++|+-..-.-. -+.+..++.-+.|.|+|||.+.+.-+
T Consensus 223 ~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 223 IDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred eeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 99999885421100 01245567778899999999988644
No 173
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.88 E-value=3.4e-08 Score=84.93 Aligned_cols=109 Identities=17% Similarity=0.162 Sum_probs=91.3
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC---CCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PET 228 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~---~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~ 228 (277)
...+.+||||.||.|+.....+...+. +|...|+|+..++..++.++..|+ ...++|.+.|+.+.. .-+
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL-----~~i~~f~~~dAfd~~~l~~l~ 207 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL-----EDIARFEQGDAFDRDSLAALD 207 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC-----ccceEEEecCCCCHhHhhccC
Confidence 356789999999999998888877653 899999999999999999998887 345689999877642 112
Q ss_pred CceeEEecchhhhcCChhh-HHHHHHHHHhcCCCCcEEEEE
Q 023787 229 GRYDVIWVQWCIGHLTDDD-FVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d-~~~~l~~~~r~LkpGG~lii~ 268 (277)
-..++++.+..+..|++.+ +...++.+.+.+.|||+++.+
T Consensus 208 p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyT 248 (311)
T PF12147_consen 208 PAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYT 248 (311)
T ss_pred CCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 3679999999999999877 455799999999999999986
No 174
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.87 E-value=2e-08 Score=87.69 Aligned_cols=76 Identities=16% Similarity=0.074 Sum_probs=62.5
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||+|||+|.++..++..+. +|+++|+++.|++.+++++.. .+++++++|+.++++++-.+|.|
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~---------~~v~~i~~D~~~~~~~~~~~~~v 109 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE---------DNLTIIEGDALKVDLSELQPLKV 109 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc---------CceEEEEChhhcCCHHHcCcceE
Confidence 45678999999999999999998866 799999999999999987643 46889999999887653225888
Q ss_pred ecchhh
Q 023787 235 WVQWCI 240 (277)
Q Consensus 235 i~~~~l 240 (277)
+++...
T Consensus 110 v~NlPY 115 (272)
T PRK00274 110 VANLPY 115 (272)
T ss_pred EEeCCc
Confidence 888664
No 175
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.86 E-value=9e-09 Score=87.18 Aligned_cols=94 Identities=20% Similarity=0.226 Sum_probs=60.1
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHH-HHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDA-ARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~-a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
++.+|||+|||||.++..+++.+..+|+++|+++.|+.. .+++..-..+. ..+++ ..+.+++..+-..||+++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~----~~ni~--~~~~~~~~~d~~~~Dvsf 148 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLE----RTNIR--YVTPADIFPDFATFDVSF 148 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEee----cCCcc--cCCHhHcCCCceeeeEEE
Confidence 567899999999999999998877789999999988876 32221100000 01121 122222222224688777
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
++..+ .+..+.+.|+| |.+++
T Consensus 149 iS~~~----------~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 149 ISLIS----------ILPELDLLLNP-NDLTL 169 (228)
T ss_pred eehHh----------HHHHHHHHhCc-CeEEE
Confidence 76653 46678888888 76554
No 176
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.85 E-value=9e-09 Score=93.34 Aligned_cols=111 Identities=17% Similarity=0.128 Sum_probs=88.9
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCCCcee
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD 232 (277)
.+.+|||+=|=||.++.+.+..+..+|+.||.|...++.|++|+.-+++. ..+..|+++|+.++- -...+||
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~----~~~~~~i~~Dvf~~l~~~~~~g~~fD 292 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLD----GDRHRFIVGDVFKWLRKAERRGEKFD 292 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCC----ccceeeehhhHHHHHHHHHhcCCccc
Confidence 47899999999999999988778878999999999999999999988763 346789999987653 2234899
Q ss_pred EEecchh-hhcCC------hhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 233 VIWVQWC-IGHLT------DDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 233 ~Vi~~~~-l~~~~------~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+|++-.. |.--+ ..+...++..+.++|+|||+++++-+.
T Consensus 293 lIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 293 LIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred EEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 9995431 11111 236788999999999999999998654
No 177
>PLN02823 spermine synthase
Probab=98.85 E-value=2.9e-08 Score=88.83 Aligned_cols=111 Identities=19% Similarity=0.214 Sum_probs=80.0
Q ss_pred CCCccEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~ 233 (277)
..+.+||.||+|.|..+..+++.. ..+++.||+++.+++.|++.+...+. ....++++++..|...+. ...++||+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~--~~~dprv~v~~~Da~~~L~~~~~~yDv 179 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNRE--AFCDKRLELIINDARAELEKRDEKFDV 179 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccc--cccCCceEEEEChhHHHHhhCCCCccE
Confidence 356799999999999999888753 45899999999999999999864321 111467889998887653 23468999
Q ss_pred Eecchhh--hcCChhh--HHHHHH-HHHhcCCCCcEEEEE
Q 023787 234 IWVQWCI--GHLTDDD--FVSFFK-RAKVGLKPGGFFVLK 268 (277)
Q Consensus 234 Vi~~~~l--~~~~~~d--~~~~l~-~~~r~LkpGG~lii~ 268 (277)
|++-..- ..-+... -..+++ .+.+.|+|||++++.
T Consensus 180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 9976311 0000000 236887 899999999998764
No 178
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.84 E-value=8.2e-09 Score=88.26 Aligned_cols=102 Identities=19% Similarity=0.179 Sum_probs=78.1
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC-C-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC---CC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TG 229 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~ 229 (277)
..++.+|||.|.|+|.++..|++... . +|+.+|+.+...+.|++++...++ ..++++.+.|+.+..++ +.
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl-----~~~v~~~~~Dv~~~g~~~~~~~ 112 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL-----DDNVTVHHRDVCEEGFDEELES 112 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC-----CTTEEEEES-GGCG--STT-TT
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC-----CCCceeEecceecccccccccC
Confidence 67899999999999999999986533 2 899999999999999999998776 56899999998654332 36
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcC-CCCcEEEEE
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGL-KPGGFFVLK 268 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~L-kpGG~lii~ 268 (277)
.||.|+.-.. +.-.++..+.++| ||||++++-
T Consensus 113 ~~DavfLDlp-------~Pw~~i~~~~~~L~~~gG~i~~f 145 (247)
T PF08704_consen 113 DFDAVFLDLP-------DPWEAIPHAKRALKKPGGRICCF 145 (247)
T ss_dssp SEEEEEEESS-------SGGGGHHHHHHHE-EEEEEEEEE
T ss_pred cccEEEEeCC-------CHHHHHHHHHHHHhcCCceEEEE
Confidence 7999886543 4447899999999 899999875
No 179
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.83 E-value=2.1e-08 Score=87.60 Aligned_cols=112 Identities=16% Similarity=0.190 Sum_probs=78.5
Q ss_pred CCCccEEEeeccccHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC-CCCCCCcee
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRYD 232 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~--~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD 232 (277)
-.+.+|||+|||+|..+..+.... ..+++++|.|+.|++.++..+..... .....+......+ .++ ...|
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~-----~~~~~~~~~~~~~~~~~--~~~D 104 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN-----NRNAEWRRVLYRDFLPF--PPDD 104 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc-----cccchhhhhhhcccccC--CCCc
Confidence 356799999999998776555433 23899999999999999988765321 0111111111111 112 2349
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSDI 276 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~~~ 276 (277)
+|+++++|..++++....+++.+.+.+.+ .|+|+|+-++.+|
T Consensus 105 Lvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf 146 (274)
T PF09243_consen 105 LVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGF 146 (274)
T ss_pred EEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHH
Confidence 99999999999987788888888887776 9999998776654
No 180
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.83 E-value=2.6e-08 Score=86.11 Aligned_cols=76 Identities=17% Similarity=0.144 Sum_probs=62.3
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee--
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD-- 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD-- 232 (277)
..++.+|||+|||+|.++..+++.+. .|+++|+++.|++.+++++.. ..+++++++|+.+++++ +||
T Consensus 27 ~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~--------~~~v~v~~~D~~~~~~~--~~d~~ 95 (253)
T TIGR00755 27 VLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL--------YERLEVIEGDALKVDLP--DFPKQ 95 (253)
T ss_pred CCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc--------CCcEEEEECchhcCChh--HcCCc
Confidence 44678999999999999999998775 599999999999999988754 25688899999887754 466
Q ss_pred -EEecchhhh
Q 023787 233 -VIWVQWCIG 241 (277)
Q Consensus 233 -~Vi~~~~l~ 241 (277)
+|+++..++
T Consensus 96 ~~vvsNlPy~ 105 (253)
T TIGR00755 96 LKVVSNLPYN 105 (253)
T ss_pred ceEEEcCChh
Confidence 777776644
No 181
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.75 E-value=5.2e-08 Score=84.99 Aligned_cols=109 Identities=19% Similarity=0.224 Sum_probs=83.5
Q ss_pred CCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC-CCCceeEE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~V 234 (277)
.+.+||-||.|.|..++.+++... .+++.||+.+.+++.+++.+........ .++++.+..|..++.- ...+||+|
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~--dpRv~i~i~Dg~~~v~~~~~~fDvI 153 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGAD--DPRVEIIIDDGVEFLRDCEEKFDVI 153 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccC--CCceEEEeccHHHHHHhCCCcCCEE
Confidence 346999999999999999997653 4999999999999999999876532222 5788888888877642 22489999
Q ss_pred ecchhhhcCCh-h--hHHHHHHHHHhcCCCCcEEEEE
Q 023787 235 WVQWCIGHLTD-D--DFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 235 i~~~~l~~~~~-~--d~~~~l~~~~r~LkpGG~lii~ 268 (277)
++-..=. ..+ + --..+++.|++.|+|+|+++..
T Consensus 154 i~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 154 IVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 9655422 111 0 0247999999999999999987
No 182
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.73 E-value=5.2e-08 Score=85.82 Aligned_cols=80 Identities=14% Similarity=0.056 Sum_probs=64.7
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.+|||||||+|.++..++.... +|+++|+++.|++.+++++...+. ..+++++++|+.+..++ .||.|
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~-----~~~v~ii~~Dal~~~~~--~~d~V 105 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPL-----ASKLEVIEGDALKTEFP--YFDVC 105 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCC-----CCcEEEEECCHhhhccc--ccCEE
Confidence 45678999999999999999987654 699999999999999998865432 35789999999876543 68999
Q ss_pred ecchhhhc
Q 023787 235 WVQWCIGH 242 (277)
Q Consensus 235 i~~~~l~~ 242 (277)
+++...+-
T Consensus 106 vaNlPY~I 113 (294)
T PTZ00338 106 VANVPYQI 113 (294)
T ss_pred EecCCccc
Confidence 98766543
No 183
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.73 E-value=2.1e-08 Score=87.54 Aligned_cols=111 Identities=21% Similarity=0.222 Sum_probs=80.3
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC---CCCCceeE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDV 233 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~ 233 (277)
.+.+|||+=|=||.++.+.+..+..+|+.||.|..+++.+++++.-+++. ..+++|++.|+.++- -..++||+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~----~~~~~~~~~Dvf~~l~~~~~~~~fD~ 198 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLD----LDRHRFIQGDVFKFLKRLKKGGRFDL 198 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-C----CTCEEEEES-HHHHHHHHHHTT-EEE
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----ccceEEEecCHHHHHHHHhcCCCCCE
Confidence 46799999999999999888777778999999999999999999887652 246889998886532 12368999
Q ss_pred Eecchh-hhc--CC-hhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 234 IWVQWC-IGH--LT-DDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 234 Vi~~~~-l~~--~~-~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
||+-.. +.- +. ..+...++..+.++|+|||.+++.-+.
T Consensus 199 IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 199 IILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp EEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 995432 110 00 236778999999999999999877553
No 184
>PRK04148 hypothetical protein; Provisional
Probab=98.73 E-value=1.4e-07 Score=72.85 Aligned_cols=91 Identities=16% Similarity=0.150 Sum_probs=69.0
Q ss_pred CCccEEEeeccccH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC-CCceeEE
Q 023787 157 QHLVALDCGSGIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVI 234 (277)
Q Consensus 157 ~~~~VLDiGcGtG~-~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~V 234 (277)
++.+|||||||+|. ++..|.+.+. .|+++|+++..++.++++. ++++.+|+.+-.+. -..+|+|
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~-------------~~~v~dDlf~p~~~~y~~a~li 81 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLG-------------LNAFVDDLFNPNLEIYKNAKLI 81 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhC-------------CeEEECcCCCCCHHHHhcCCEE
Confidence 45789999999996 8887776665 5999999999999987753 56788898875533 2479999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
++... +.+++..+.++++.+. .-++|.
T Consensus 82 ysirp-----p~el~~~~~~la~~~~--~~~~i~ 108 (134)
T PRK04148 82 YSIRP-----PRDLQPFILELAKKIN--VPLIIK 108 (134)
T ss_pred EEeCC-----CHHHHHHHHHHHHHcC--CCEEEE
Confidence 98776 4577777777777543 555554
No 185
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.71 E-value=9.2e-08 Score=78.33 Aligned_cols=111 Identities=21% Similarity=0.168 Sum_probs=79.1
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC-c---------EEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN-E---------VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~---------v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 224 (277)
..++..+||--||+|.+....+..+.. . +.|+|+++.+++.|++++...++ ...+.+.+.|+.++
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~-----~~~i~~~~~D~~~l 100 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV-----EDYIDFIQWDAREL 100 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT------CGGEEEEE--GGGG
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc-----CCceEEEecchhhc
Confidence 456789999999999998776554333 2 78999999999999999987665 45688999999999
Q ss_pred CCCCCceeEEecchhhhcC-Ch-----hhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 225 TPETGRYDVIWVQWCIGHL-TD-----DDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 225 ~~~~~~fD~Vi~~~~l~~~-~~-----~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++.++++|+|+++.....- .. .-...+++++.++|++...+++.++
T Consensus 101 ~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~ 152 (179)
T PF01170_consen 101 PLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSN 152 (179)
T ss_dssp GGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESC
T ss_pred ccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 8666899999998765432 21 1145678999999999666666543
No 186
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.71 E-value=1.2e-08 Score=91.89 Aligned_cols=112 Identities=21% Similarity=0.230 Sum_probs=94.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++..++|+|||.|..+..+..-....++|+|.++..+..+.......++ .....+...++-+.+++++.||.+
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l-----~~k~~~~~~~~~~~~fedn~fd~v 182 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYL-----DNKCNFVVADFGKMPFEDNTFDGV 182 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHh-----hhhcceehhhhhcCCCCccccCcE
Confidence 345568999999999999988776666899999999998888777655444 345566778999989999999999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
.+..+..|.+ +...++++++|+++|||+++..|.+..
T Consensus 183 ~~ld~~~~~~--~~~~~y~Ei~rv~kpGG~~i~~e~i~~ 219 (364)
T KOG1269|consen 183 RFLEVVCHAP--DLEKVYAEIYRVLKPGGLFIVKEWIKT 219 (364)
T ss_pred EEEeecccCC--cHHHHHHHHhcccCCCceEEeHHHHHh
Confidence 9999999999 777999999999999999999876643
No 187
>PRK00536 speE spermidine synthase; Provisional
Probab=98.67 E-value=8.2e-08 Score=82.82 Aligned_cols=101 Identities=17% Similarity=0.089 Sum_probs=75.8
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
.+.+.+||=||.|.|..++.+++. ..+|+.||+.+.+++.+++.++.... ...+++++.+.. +.+ ...++||+|
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh-~~~v~mVeID~~Vv~~~k~~lP~~~~--~~~DpRv~l~~~-~~~--~~~~~fDVI 143 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY-DTHVDFVQADEKILDSFISFFPHFHE--VKNNKNFTHAKQ-LLD--LDIKKYDLI 143 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc-CCeeEEEECCHHHHHHHHHHCHHHHH--hhcCCCEEEeeh-hhh--ccCCcCCEE
Confidence 457799999999999999999955 45899999999999999997764221 112456666542 211 123689999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
++-..+ + ..+++.+++.|+|||+++..
T Consensus 144 IvDs~~---~----~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 144 ICLQEP---D----IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred EEcCCC---C----hHHHHHHHHhcCCCcEEEEC
Confidence 976431 1 36889999999999999986
No 188
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=2.3e-08 Score=77.11 Aligned_cols=79 Identities=13% Similarity=0.096 Sum_probs=67.0
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
-.+++++|+|||.|.++....-.....|.|+|+.+..++.+++|.... ..++++.++|+.+..+..+.||.++
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEf-------EvqidlLqcdildle~~~g~fDtav 119 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEF-------EVQIDLLQCDILDLELKGGIFDTAV 119 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHh-------hhhhheeeeeccchhccCCeEeeEE
Confidence 467899999999999996665455568999999999999999998764 4568999999999887779999999
Q ss_pred cchhhh
Q 023787 236 VQWCIG 241 (277)
Q Consensus 236 ~~~~l~ 241 (277)
.+..|.
T Consensus 120 iNppFG 125 (185)
T KOG3420|consen 120 INPPFG 125 (185)
T ss_pred ecCCCC
Confidence 887764
No 189
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.63 E-value=9.4e-08 Score=87.18 Aligned_cols=99 Identities=16% Similarity=0.180 Sum_probs=77.3
Q ss_pred CccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
+.+|||++||+|..+..++.... .+|+++|+++.+++.+++++..+++ .++.+.+.|+..+.....+||+|++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~------~~~~v~~~Da~~~l~~~~~fD~V~l 131 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL------ENEKVFNKDANALLHEERKFDVVDI 131 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CceEEEhhhHHHHHhhcCCCCEEEE
Confidence 35899999999999999876543 4799999999999999999877654 2456788887654321357999998
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.-. . ....++..+.+.+++||+++++
T Consensus 132 DP~----G--s~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 132 DPF----G--SPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CCC----C--CcHHHHHHHHHHhcCCCEEEEE
Confidence 642 2 2236888877889999999998
No 190
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.63 E-value=1e-07 Score=90.12 Aligned_cols=107 Identities=16% Similarity=0.040 Sum_probs=83.1
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCcee
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD 232 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD 232 (277)
.....+||||||.|.++..++...+. .+.|+|++...+..+.++....++ .|+.+++.|+..+. ++++++|
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l------~N~~~~~~~~~~~~~~~~~~sv~ 419 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI------TNFLLFPNNLDLILNDLPNNSLD 419 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC------CeEEEEcCCHHHHHHhcCccccc
Confidence 45678999999999999999999887 899999999988888777655443 56777777764332 5678999
Q ss_pred EEecchhhhcCChh------hHHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~------d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.|+.++.=-+.... --..+++.+++.|||||.+.+.
T Consensus 420 ~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 420 GIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred EEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 99988764332111 1357999999999999999886
No 191
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.62 E-value=1.4e-07 Score=85.80 Aligned_cols=98 Identities=18% Similarity=0.135 Sum_probs=71.6
Q ss_pred ccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CC---------
Q 023787 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PE--------- 227 (277)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~--------- 227 (277)
.+|||++||+|.++..+++. ..+|+++|+|+.+++.|++++..+++ .++.|+.+|+.++. ..
T Consensus 208 ~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~------~~v~~~~~d~~~~l~~~~~~~~~~~~~ 280 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGI------DNVQIIRMSAEEFTQAMNGVREFNRLK 280 (362)
T ss_pred CeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCC------CcEEEEECCHHHHHHHHhhcccccccc
Confidence 57999999999999977654 56799999999999999999877654 36889999886631 10
Q ss_pred -----CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 228 -----TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 228 -----~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
..+||+|+..-.-.-+. ..+++.+.+ |+++++++-+
T Consensus 281 ~~~~~~~~~D~v~lDPPR~G~~----~~~l~~l~~---~~~ivyvSC~ 321 (362)
T PRK05031 281 GIDLKSYNFSTIFVDPPRAGLD----DETLKLVQA---YERILYISCN 321 (362)
T ss_pred cccccCCCCCEEEECCCCCCCc----HHHHHHHHc---cCCEEEEEeC
Confidence 12589999876632222 245555543 7888888744
No 192
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.62 E-value=3.7e-08 Score=80.86 Aligned_cols=105 Identities=13% Similarity=0.146 Sum_probs=75.6
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCCCcee
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD 232 (277)
.+.++||+-||+|.++...+.+++.+|+.||.++..+...+++++..+. ..+...+..|....- ....+||
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~-----~~~~~v~~~d~~~~l~~~~~~~~~fD 116 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGL-----EDKIRVIKGDAFKFLLKLAKKGEKFD 116 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT------GGGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCC-----CcceeeeccCHHHHHHhhcccCCCce
Confidence 5789999999999999999999999999999999999999999887554 335777777753321 1347999
Q ss_pred EEecchhhhcCChhhHHHHHHHHH--hcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAK--VGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~--r~LkpGG~lii~ 268 (277)
+|++-.....-. ....++..+. .+|+++|.+++-
T Consensus 117 iIflDPPY~~~~--~~~~~l~~l~~~~~l~~~~~ii~E 152 (183)
T PF03602_consen 117 IIFLDPPYAKGL--YYEELLELLAENNLLNEDGLIIIE 152 (183)
T ss_dssp EEEE--STTSCH--HHHHHHHHHHHTTSEEEEEEEEEE
T ss_pred EEEECCCcccch--HHHHHHHHHHHCCCCCCCEEEEEE
Confidence 999887755421 1356777776 789999988774
No 193
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.62 E-value=2.7e-07 Score=81.70 Aligned_cols=109 Identities=19% Similarity=0.110 Sum_probs=84.5
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEc-CCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~fD~ 233 (277)
..++..|||==||||.+.....-.+. +++|+|++..|++-|+.|+...+. ....+... |+..+++++.+||.
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i------~~~~~~~~~Da~~lpl~~~~vda 267 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGI------EDYPVLKVLDATNLPLRDNSVDA 267 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCc------CceeEEEecccccCCCCCCccce
Confidence 56788999999999999987664455 599999999999999999987543 22333444 99999988778999
Q ss_pred EecchhhhcCC-------hhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 234 IWVQWCIGHLT-------DDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 234 Vi~~~~l~~~~-------~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
|++-....--+ ++=...+|+.+.++||+||+++|.-+
T Consensus 268 IatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 268 IATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred EEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 99654322111 22367899999999999999999754
No 194
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.58 E-value=6.2e-08 Score=83.30 Aligned_cols=112 Identities=21% Similarity=0.229 Sum_probs=78.0
Q ss_pred CCCccEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCC-cee
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETG-RYD 232 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~-~fD 232 (277)
+++.+||-||.|.|..+..+++.. ..+++.||+++.+++.|++.+...... ...++++++..|...+. -... +||
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--~~d~r~~i~~~Dg~~~l~~~~~~~yD 152 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG--LDDPRVRIIIGDGRKFLKETQEEKYD 152 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT--GGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc--cCCCceEEEEhhhHHHHHhccCCccc
Confidence 467899999999999999888544 348999999999999999987542110 11467888998876553 1223 899
Q ss_pred EEecchhhhcCChhh--HHHHHHHHHhcCCCCcEEEEEe
Q 023787 233 VIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d--~~~~l~~~~r~LkpGG~lii~e 269 (277)
+|+.-..-...+... -..+++.+++.|+|||++++.-
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 999643321111111 2479999999999999999864
No 195
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.58 E-value=6.3e-07 Score=79.62 Aligned_cols=112 Identities=18% Similarity=0.134 Sum_probs=82.3
Q ss_pred CCCccEEEeeccccHHHHHHHHhC-----CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC----CC
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY-----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TP 226 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-----~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~ 226 (277)
.++..++|+|||.|.=+..|++.. ...++.+|+|..+++.+.+++....+ ....+.-+++|+.+. +.
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~----p~l~v~~l~gdy~~~l~~l~~ 150 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF----SHVRCAGLLGTYDDGLAWLKR 150 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC----CCeEEEEEEecHHHHHhhccc
Confidence 356689999999999888777653 22699999999999999999872211 012334467777553 11
Q ss_pred --CCCceeEEecc-hhhhcCChhhHHHHHHHHHh-cCCCCcEEEEE-ecC
Q 023787 227 --ETGRYDVIWVQ-WCIGHLTDDDFVSFFKRAKV-GLKPGGFFVLK-ENI 271 (277)
Q Consensus 227 --~~~~fD~Vi~~-~~l~~~~~~d~~~~l~~~~r-~LkpGG~lii~-e~~ 271 (277)
......+|+.- .++.++++++...+|+++++ .|+|||.|++. |.+
T Consensus 151 ~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~ 200 (319)
T TIGR03439 151 PENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGC 200 (319)
T ss_pred ccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCC
Confidence 12345666655 48999999999999999999 99999999986 544
No 196
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.57 E-value=1.6e-07 Score=85.00 Aligned_cols=98 Identities=18% Similarity=0.122 Sum_probs=70.9
Q ss_pred ccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC-----------
Q 023787 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE----------- 227 (277)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----------- 227 (277)
.+|||++||+|.++..+++. +.+|+++|+|+.+++.|++++..+++ .++.|+..|+.++...
T Consensus 199 ~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~------~~v~~~~~d~~~~~~~~~~~~~~~~~~ 271 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNI------DNVQIIRMSAEEFTQAMNGVREFRRLK 271 (353)
T ss_pred CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEEcCHHHHHHHHhhcccccccc
Confidence 47999999999999977655 45799999999999999999877654 3688999888664210
Q ss_pred -----CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 228 -----TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 228 -----~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
...||+|+..-.=.-+ ...+++.+.+ |+++++++-+
T Consensus 272 ~~~~~~~~~d~v~lDPPR~G~----~~~~l~~l~~---~~~ivYvsC~ 312 (353)
T TIGR02143 272 GIDLKSYNCSTIFVDPPRAGL----DPDTCKLVQA---YERILYISCN 312 (353)
T ss_pred ccccccCCCCEEEECCCCCCC----cHHHHHHHHc---CCcEEEEEcC
Confidence 1137999876652211 2245555543 7888888744
No 197
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.56 E-value=1.5e-06 Score=67.44 Aligned_cols=102 Identities=22% Similarity=0.221 Sum_probs=71.8
Q ss_pred EEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC--CCCCC-CceeEEe
Q 023787 161 ALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD--FTPET-GRYDVIW 235 (277)
Q Consensus 161 VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~-~~fD~Vi 235 (277)
++|+|||+|..+ .+..... ..++++|+++.++..++...... . ...+.+...+... +++.. ..||++.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 124 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGA-G-----LGLVDFVVADALGGVLPFEDSASFDLVI 124 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhc-C-----CCceEEEEeccccCCCCCCCCCceeEEe
Confidence 999999999976 3333322 26899999999999965544221 0 0115677777665 56665 4899994
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
+....++.. ....+.++.+.|+|+|.+++.+...
T Consensus 125 ~~~~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 125 SLLVLHLLP---PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred eeeehhcCC---HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 444444444 5689999999999999999987654
No 198
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.54 E-value=4.1e-07 Score=78.61 Aligned_cols=109 Identities=19% Similarity=0.253 Sum_probs=82.0
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCC---CC--------------------C-------
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP---EN--------------------H------- 205 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~---~~--------------------~------- 205 (277)
..+.+||-=|||.|+++..++..++. +.|.|.|--|+-..+-.+.. .+ +
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~~-~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGYA-VQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccce-EEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 45679999999999999999999885 99999999997765543321 00 0
Q ss_pred ----CCCCCCcceeEEEcCCCCCCCCC---CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 206 ----MAPDMHKATNFFCVPLQDFTPET---GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 206 ----~~~~~~~~~~~~~~d~~~~~~~~---~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
.......+.....+|+.++-.++ ++||+|+.++.+...+ ++...|..+.++|||||+.+-
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~--Ni~~Yi~tI~~lLkpgG~WIN 200 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAE--NIIEYIETIEHLLKPGGYWIN 200 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechH--HHHHHHHHHHHHhccCCEEEe
Confidence 00011235666667777765444 7999999998887655 899999999999999997764
No 199
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.51 E-value=1.8e-06 Score=71.94 Aligned_cols=114 Identities=21% Similarity=0.275 Sum_probs=87.5
Q ss_pred HHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeE
Q 023787 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (277)
Q Consensus 139 ~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~ 216 (277)
..|+..+++. -.++++||||.=||..+..++...+. +|+++|+++...+.+.+..+..+. ...+++
T Consensus 62 g~fl~~li~~-------~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv-----~~KI~~ 129 (237)
T KOG1663|consen 62 GQFLQMLIRL-------LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV-----DHKITF 129 (237)
T ss_pred HHHHHHHHHH-------hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc-----cceeee
Confidence 3455555542 25689999999999999988877665 899999999999999888777665 578999
Q ss_pred EEcCCCCCC------CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 217 FCVPLQDFT------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 217 ~~~d~~~~~------~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++++..+.. .+.++||+++.-.- ..+....+.++.+++|+||++++ ||
T Consensus 130 i~g~a~esLd~l~~~~~~~tfDfaFvDad-----K~nY~~y~e~~l~Llr~GGvi~~-DN 183 (237)
T KOG1663|consen 130 IEGPALESLDELLADGESGTFDFAFVDAD-----KDNYSNYYERLLRLLRVGGVIVV-DN 183 (237)
T ss_pred eecchhhhHHHHHhcCCCCceeEEEEccc-----hHHHHHHHHHHHhhcccccEEEE-ec
Confidence 998765431 34579999985322 23455789999999999999877 45
No 200
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.51 E-value=6.5e-07 Score=73.42 Aligned_cols=96 Identities=22% Similarity=0.232 Sum_probs=75.0
Q ss_pred cEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecch
Q 023787 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (277)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~ 238 (277)
+++|||+|.|.-+..++-..+. +++.+|.+..=+...+.-....++ .++++++..+++ .....+||+|++..
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L------~nv~v~~~R~E~-~~~~~~fd~v~aRA 123 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL------SNVEVINGRAEE-PEYRESFDVVTARA 123 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-------SSEEEEES-HHH-TTTTT-EEEEEEES
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC------CCEEEEEeeecc-cccCCCccEEEeeh
Confidence 7999999999988888777776 899999999877766665555444 568889988887 33457999999988
Q ss_pred hhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 239 ~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+- .+..++.-+...+++||.+++.
T Consensus 124 v~------~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 124 VA------PLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp SS------SHHHHHHHHGGGEEEEEEEEEE
T ss_pred hc------CHHHHHHHHHHhcCCCCEEEEE
Confidence 74 4558899999999999998875
No 201
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=5.3e-07 Score=73.91 Aligned_cols=105 Identities=19% Similarity=0.194 Sum_probs=77.5
Q ss_pred CCCccEEEeeccccHHHHHHHHh-CCC--cEEEEeCCHHHHHHHHHHhCCCCC----CCCCCCcceeEEEcCCCCCCCCC
Q 023787 156 NQHLVALDCGSGIGRITKNLLIR-YFN--EVDLLEPVSHFLDAARESLAPENH----MAPDMHKATNFFCVPLQDFTPET 228 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~-~~~--~v~gvD~S~~~l~~a~~~~~~~~~----~~~~~~~~~~~~~~d~~~~~~~~ 228 (277)
.++.+.||+|+|+|.++..++.. +.. ...|||.-++.++.+++++...-- ...-...+..++.+|......+.
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~ 160 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQ 160 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCcc
Confidence 47899999999999999877643 222 349999999999999999864210 00011245778888888877777
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.+||.|++...-. ..-+++...|+|||.+++-
T Consensus 161 a~YDaIhvGAaa~--------~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 161 APYDAIHVGAAAS--------ELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CCcceEEEccCcc--------ccHHHHHHhhccCCeEEEe
Confidence 8999999874422 4556777789999999874
No 202
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.50 E-value=2.1e-07 Score=77.19 Aligned_cols=99 Identities=18% Similarity=0.244 Sum_probs=71.9
Q ss_pred CCCccEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
.++..|+|+-||.|.++..+++. ....|+++|++|..++.+++++..+++ ..++..+++|..++.. .+.||.|
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv-----~~~i~~~~~D~~~~~~-~~~~drv 173 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV-----ENRIEVINGDAREFLP-EGKFDRV 173 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT------TTTEEEEES-GGG----TT-EEEE
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC-----CCeEEEEcCCHHHhcC-ccccCEE
Confidence 46789999999999999998873 334799999999999999999988766 4568889999988765 5799999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEE
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (277)
++...-. -..++..+.+++++||++-
T Consensus 174 im~lp~~------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 174 IMNLPES------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EE--TSS------GGGGHHHHHHHEEEEEEEE
T ss_pred EECChHH------HHHHHHHHHHHhcCCcEEE
Confidence 9876522 1258888999999999874
No 203
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.46 E-value=1.7e-07 Score=77.91 Aligned_cols=110 Identities=16% Similarity=0.073 Sum_probs=83.0
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD 232 (277)
...+.+|||...|-|..+...++++...|.-++.++..++.|.-|-=..++ ....++.+.+|..+.. +++.+||
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l----~~~~i~iilGD~~e~V~~~~D~sfD 207 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSREL----FEIAIKIILGDAYEVVKDFDDESFD 207 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccc----cccccEEecccHHHHHhcCCccccc
Confidence 557899999999999999999999998899999999999988755322222 1335788888887663 7788999
Q ss_pred EEecchh-hhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWC-IGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~-l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|+--.. |.+...---..+.++++|+|||||.++--
T Consensus 208 aIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHY 244 (287)
T COG2521 208 AIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHY 244 (287)
T ss_pred eEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEE
Confidence 9984321 22222112347999999999999999864
No 204
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.46 E-value=1.5e-06 Score=81.28 Aligned_cols=109 Identities=16% Similarity=0.131 Sum_probs=82.4
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCce
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~f 231 (277)
+.++.+|||++||.|.=|.+++..... .|+++|+++.-++.+++++...|+ .++.....|...+. ...+.|
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~------~nv~v~~~D~~~~~~~~~~~f 184 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV------SNVALTHFDGRVFGAALPETF 184 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCchhhhhhhchhhc
Confidence 467889999999999999999876533 799999999999999999987664 45677777776653 223679
Q ss_pred eEEe----cch--hhhcCC-------hhh-------HHHHHHHHHhcCCCCcEEEEEe
Q 023787 232 DVIW----VQW--CIGHLT-------DDD-------FVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 232 D~Vi----~~~--~l~~~~-------~~d-------~~~~l~~~~r~LkpGG~lii~e 269 (277)
|.|+ |+. ++..-+ .++ ...+|..+.+.|||||+|+.+.
T Consensus 185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 185 DAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred CeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 9999 443 232211 111 2678999999999999998763
No 205
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.46 E-value=1.5e-07 Score=80.56 Aligned_cols=96 Identities=19% Similarity=0.151 Sum_probs=77.2
Q ss_pred CCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.+..++|+|||.|..+. ..+ ..+.|.|++...+..+++.-. .....+|+..+++.+.+||.++
T Consensus 45 ~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~~~------------~~~~~ad~l~~p~~~~s~d~~l 108 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRSGG------------DNVCRADALKLPFREESFDAAL 108 (293)
T ss_pred CcceeeecccCCcccCc----CCCcceeeecchhhhhccccccCCC------------ceeehhhhhcCCCCCCccccch
Confidence 47889999999997654 122 259999999988888765421 1456789999999989999999
Q ss_pred cchhhhcCC-hhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 236 VQWCIGHLT-DDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 236 ~~~~l~~~~-~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+..++||+. ......+++++.|.|+|||...+.
T Consensus 109 siavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 109 SIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 999999996 445678999999999999986664
No 206
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=1.3e-06 Score=70.16 Aligned_cols=103 Identities=16% Similarity=0.038 Sum_probs=75.5
Q ss_pred CccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
+.-+||||||+|..+..+++.... .+.++|++|.+++..++....++ .+++.++.|+..-..+ ++.|+++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~-------~~~~~V~tdl~~~l~~-~~VDvLv 115 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR-------VHIDVVRTDLLSGLRN-ESVDVLV 115 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC-------CccceeehhHHhhhcc-CCccEEE
Confidence 567999999999999988766433 68899999999999887776542 3467778887664333 7899988
Q ss_pred cchhhhcC-------------------ChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 236 VQWCIGHL-------------------TDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 236 ~~~~l~~~-------------------~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.+-..--- ..+-...++..+-.+|.|.|++++.
T Consensus 116 fNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv 167 (209)
T KOG3191|consen 116 FNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLV 167 (209)
T ss_pred ECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEee
Confidence 66432111 1112456778888899999999986
No 207
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.41 E-value=1e-06 Score=78.41 Aligned_cols=109 Identities=17% Similarity=0.153 Sum_probs=92.1
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
..+.+|||.=||.|.++..++..+...|+++|++|..++.+++++..++. ...+..+++|..+....-+.+|-|+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v-----~~~v~~i~gD~rev~~~~~~aDrIi 261 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKV-----EGRVEPILGDAREVAPELGVADRII 261 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCc-----cceeeEEeccHHHhhhccccCCEEE
Confidence 35889999999999999999988776799999999999999999998776 3448889999998876657899999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSD 275 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (277)
+...- .-..++..+.+.+++||++-+-+++.++.
T Consensus 262 m~~p~------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 262 MGLPK------SAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred eCCCC------cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 88763 22368888888999999999998887643
No 208
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.36 E-value=2.4e-06 Score=69.55 Aligned_cols=107 Identities=17% Similarity=0.121 Sum_probs=80.8
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--C-CCCcee
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--P-ETGRYD 232 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~-~~~~fD 232 (277)
-.+.++||+=+|+|.++...+.++...++.||.+...+...+++....++ ..+..++..|...+. . ..++||
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~-----~~~~~~~~~da~~~L~~~~~~~~FD 116 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGL-----EGEARVLRNDALRALKQLGTREPFD 116 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-----ccceEEEeecHHHHHHhcCCCCccc
Confidence 36789999999999999999999999999999999999999999877554 356677777776441 1 223599
Q ss_pred EEecchhhhc-CChhhHHHHHHH--HHhcCCCCcEEEEEe
Q 023787 233 VIWVQWCIGH-LTDDDFVSFFKR--AKVGLKPGGFFVLKE 269 (277)
Q Consensus 233 ~Vi~~~~l~~-~~~~d~~~~l~~--~~r~LkpGG~lii~e 269 (277)
+|+.-..++. +. +....+.. -...|+|+|.+++-.
T Consensus 117 lVflDPPy~~~l~--~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 117 LVFLDPPYAKGLL--DKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred EEEeCCCCccchh--hHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 9999888762 11 11223333 457799999999853
No 209
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.31 E-value=7.5e-07 Score=76.50 Aligned_cols=117 Identities=17% Similarity=0.254 Sum_probs=77.8
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCC-------------CCCC---------CCcc
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH-------------MAPD---------MHKA 213 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~-------------~~~~---------~~~~ 213 (277)
.++.++||||||+-..-..-+...+.+|+..|+++..++..++-+...+- .+.. ....
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 35679999999996554433445667999999999999988877655321 0000 0111
Q ss_pred e-eEEEcCCCCCC-CCC-----CceeEEecchhhhcCC--hhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 214 T-NFFCVPLQDFT-PET-----GRYDVIWVQWCIGHLT--DDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 214 ~-~~~~~d~~~~~-~~~-----~~fD~Vi~~~~l~~~~--~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
+ ..+.+|+.+.+ ..+ .+||+|++.+++.... .+....+++++.++|||||.|++..-..
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 2 25567887654 221 3599999999998764 4568899999999999999999986544
No 210
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.30 E-value=1.8e-06 Score=78.46 Aligned_cols=99 Identities=10% Similarity=0.042 Sum_probs=79.4
Q ss_pred CccEEEeeccccHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC-CCCceeEE
Q 023787 158 HLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~--~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~V 234 (277)
+.+|||+.||+|..+..++.+ +..+|+++|+++..++.++++++.++. .++.+++.|+..+.. ...+||+|
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~------~~~~v~~~Da~~~l~~~~~~fDvI 118 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV------ENIEVPNEDAANVLRYRNRKFHVI 118 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CcEEEEchhHHHHHHHhCCCCCEE
Confidence 368999999999999999987 557899999999999999999977543 346778888766532 12579999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
..-. + ..+ ..++..+.+.+++||+++++
T Consensus 119 dlDP-f-Gs~----~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 119 DIDP-F-GTP----APFVDSAIQASAERGLLLVT 146 (374)
T ss_pred EeCC-C-CCc----HHHHHHHHHhcccCCEEEEE
Confidence 8855 3 222 26899999999999999998
No 211
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=2.7e-06 Score=72.94 Aligned_cols=77 Identities=18% Similarity=0.151 Sum_probs=65.0
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCC-ceeE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG-RYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~fD~ 233 (277)
..++..|||||+|.|.+|..|+++... |+++|+++.+++..++++.. ..+++.+.+|+....++.- .++.
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~~-v~aiEiD~~l~~~L~~~~~~--------~~n~~vi~~DaLk~d~~~l~~~~~ 98 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLLERAAR-VTAIEIDRRLAEVLKERFAP--------YDNLTVINGDALKFDFPSLAQPYK 98 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhhcCe-EEEEEeCHHHHHHHHHhccc--------ccceEEEeCchhcCcchhhcCCCE
Confidence 455789999999999999999988775 99999999999999999864 4679999999998887632 5788
Q ss_pred Eecchhh
Q 023787 234 IWVQWCI 240 (277)
Q Consensus 234 Vi~~~~l 240 (277)
|+++...
T Consensus 99 vVaNlPY 105 (259)
T COG0030 99 VVANLPY 105 (259)
T ss_pred EEEcCCC
Confidence 8877654
No 212
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.28 E-value=1.3e-06 Score=76.80 Aligned_cols=76 Identities=16% Similarity=0.186 Sum_probs=60.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCC-
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETG- 229 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~- 229 (277)
+.++..++|++||.|..+..+++... .+|+|+|.++.|++.|++++.. ..++.+++.++.++. .+.+
T Consensus 17 ~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--------~~ri~~i~~~f~~l~~~l~~~~ 88 (296)
T PRK00050 17 IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--------FGRFTLVHGNFSNLKEVLAEGL 88 (296)
T ss_pred CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--------CCcEEEEeCCHHHHHHHHHcCC
Confidence 45677999999999999999998864 3899999999999999988754 246888999888764 2212
Q ss_pred -ceeEEecch
Q 023787 230 -RYDVIWVQW 238 (277)
Q Consensus 230 -~fD~Vi~~~ 238 (277)
+||.|++..
T Consensus 89 ~~vDgIl~DL 98 (296)
T PRK00050 89 GKVDGILLDL 98 (296)
T ss_pred CccCEEEECC
Confidence 799998543
No 213
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.28 E-value=2e-06 Score=69.39 Aligned_cols=102 Identities=17% Similarity=0.099 Sum_probs=82.6
Q ss_pred ccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecch
Q 023787 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (277)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~ 238 (277)
..+.|+|+|+|.++. ++.+...+|++++.+|.-.+.|.+++.-.|+ .+++.+.+|+.++.++ ..|+|+|-.
T Consensus 34 d~~~DLGaGsGiLs~-~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~------~n~evv~gDA~~y~fe--~ADvvicEm 104 (252)
T COG4076 34 DTFADLGAGSGILSV-VAAHAAERVIAIEKDPKRARLAEENLHVPGD------VNWEVVVGDARDYDFE--NADVVICEM 104 (252)
T ss_pred hceeeccCCcchHHH-HHHhhhceEEEEecCcHHHHHhhhcCCCCCC------cceEEEeccccccccc--ccceeHHHH
Confidence 679999999999998 5556677999999999999999999765553 6899999999998884 589999866
Q ss_pred hhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 239 ~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.=.-+-.+....+++.+...||-++.++-.+
T Consensus 105 lDTaLi~E~qVpV~n~vleFLr~d~tiiPq~ 135 (252)
T COG4076 105 LDTALIEEKQVPVINAVLEFLRYDPTIIPQE 135 (252)
T ss_pred hhHHhhcccccHHHHHHHHHhhcCCccccHH
Confidence 4333334456778999999999999887543
No 214
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.27 E-value=4.4e-06 Score=71.18 Aligned_cols=76 Identities=16% Similarity=0.116 Sum_probs=64.7
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++..|||+|.|||.+|..+++.+.. |+++++.+.|+....++...... ......+.+|+...+.+ .||.+
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~~kk-VvA~E~Dprmvael~krv~gtp~-----~~kLqV~~gD~lK~d~P--~fd~c 127 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEAGKK-VVAVEIDPRMVAELEKRVQGTPK-----SGKLQVLHGDFLKTDLP--RFDGC 127 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCe-EEEEecCcHHHHHHHHHhcCCCc-----cceeeEEecccccCCCc--cccee
Confidence 678899999999999999999988775 99999999999999999887543 35678888998877654 69999
Q ss_pred ecch
Q 023787 235 WVQW 238 (277)
Q Consensus 235 i~~~ 238 (277)
|++.
T Consensus 128 VsNl 131 (315)
T KOG0820|consen 128 VSNL 131 (315)
T ss_pred eccC
Confidence 9754
No 215
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.21 E-value=4.3e-07 Score=74.26 Aligned_cols=96 Identities=19% Similarity=0.245 Sum_probs=73.7
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
...+.++||+|+|.|..+..++ ..+.+|.+.+.|..|....+++- |-+....++...+-+||+|
T Consensus 110 ~~~~~~lLDlGAGdGeit~~m~-p~feevyATElS~tMr~rL~kk~---------------ynVl~~~ew~~t~~k~dli 173 (288)
T KOG3987|consen 110 GQEPVTLLDLGAGDGEITLRMA-PTFEEVYATELSWTMRDRLKKKN---------------YNVLTEIEWLQTDVKLDLI 173 (288)
T ss_pred CCCCeeEEeccCCCcchhhhhc-chHHHHHHHHhhHHHHHHHhhcC---------------CceeeehhhhhcCceeehH
Confidence 4567899999999999999765 56668999999999999887642 1112222222223579999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCC-CcEEEEE
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKP-GGFFVLK 268 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~Lkp-GG~lii~ 268 (277)
.|.+.+.-.. +.-.+++.++.+|+| +|.++++
T Consensus 174 ~clNlLDRc~--~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 174 LCLNLLDRCF--DPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred HHHHHHHhhc--ChHHHHHHHHHHhccCCCcEEEE
Confidence 9999987665 555899999999999 9988875
No 216
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.18 E-value=6.4e-06 Score=73.31 Aligned_cols=110 Identities=18% Similarity=0.080 Sum_probs=69.7
Q ss_pred CCCCccEEEeeccccHHHHHHHHh--------CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIR--------YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT- 225 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~--------~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~- 225 (277)
..++.+|+|-.||+|.+...+.+. ....++|+|+++.++..|+-++.-.+.. .....+...|....+
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~----~~~~~i~~~d~l~~~~ 119 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID----NSNINIIQGDSLENDK 119 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH----CBGCEEEES-TTTSHS
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc----cccccccccccccccc
Confidence 556778999999999998877763 2338999999999999998765332211 122346666654433
Q ss_pred CC-CCceeEEecchhhhcC--Ch-----------------hhHHHHHHHHHhcCCCCcEEEEE
Q 023787 226 PE-TGRYDVIWVQWCIGHL--TD-----------------DDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 226 ~~-~~~fD~Vi~~~~l~~~--~~-----------------~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.. ...||+|+++..+... .. ..-..++..+.+.|++||++.+.
T Consensus 120 ~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~I 182 (311)
T PF02384_consen 120 FIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAII 182 (311)
T ss_dssp CTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEE
Confidence 22 4689999988655432 00 01124889999999999987664
No 217
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.18 E-value=1.1e-05 Score=67.41 Aligned_cols=97 Identities=25% Similarity=0.268 Sum_probs=74.1
Q ss_pred CccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
+.+++|||+|.|.-+..++-..+. +|+.+|....=+...+.-....++ .|+.+++.-++++......||+|++
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L------~nv~i~~~RaE~~~~~~~~~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL------ENVEIVHGRAEEFGQEKKQYDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC------CCeEEehhhHhhcccccccCcEEEe
Confidence 589999999999998887745444 799999988766666555555443 6789999999987643211999998
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEE
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (277)
..+- .+..++.-+...+|+||.++
T Consensus 142 RAva------~L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 142 RAVA------SLNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred ehcc------chHHHHHHHHHhcccCCcch
Confidence 8763 55578888889999988864
No 218
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=8.7e-06 Score=75.32 Aligned_cols=105 Identities=22% Similarity=0.208 Sum_probs=80.0
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC---CCce
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TGRY 231 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~f 231 (277)
..++.++||+=||.|.++..++ ....+|+|+|+++++++.|+++++.++. .|+.|..++.+++... ...+
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA-~~~~~V~gvEi~~~aV~~A~~NA~~n~i------~N~~f~~~~ae~~~~~~~~~~~~ 363 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLA-KRVKKVHGVEISPEAVEAAQENAAANGI------DNVEFIAGDAEEFTPAWWEGYKP 363 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhc-ccCCEEEEEecCHHHHHHHHHHHHHcCC------CcEEEEeCCHHHHhhhccccCCC
Confidence 4566899999999999999888 4455799999999999999999998876 4589999999887533 2478
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
|.|+..-.=.-+. . .+++.+. .++|-.+++++-|-
T Consensus 364 d~VvvDPPR~G~~--~--~~lk~l~-~~~p~~IvYVSCNP 398 (432)
T COG2265 364 DVVVVDPPRAGAD--R--EVLKQLA-KLKPKRIVYVSCNP 398 (432)
T ss_pred CEEEECCCCCCCC--H--HHHHHHH-hcCCCcEEEEeCCH
Confidence 9999765543333 1 3444444 46788888888653
No 219
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.17 E-value=1.1e-05 Score=74.14 Aligned_cols=105 Identities=16% Similarity=0.277 Sum_probs=88.0
Q ss_pred ccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecch
Q 023787 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (277)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~ 238 (277)
.++|-+|||.-.++..+.+.++..|+.+|+|+..++....+.... .....+...|+..+.+++.+||+|+.-+
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~-------~~~~~~~~~d~~~l~fedESFdiVIdkG 122 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE-------RPEMQMVEMDMDQLVFEDESFDIVIDKG 122 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC-------CcceEEEEecchhccCCCcceeEEEecC
Confidence 489999999999999999889999999999999999887765321 3568889999999999999999999998
Q ss_pred hhhcCChh--------hHHHHHHHHHhcCCCCcEEEEEec
Q 023787 239 CIGHLTDD--------DFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 239 ~l~~~~~~--------d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
.++++-.. .....+.++.|+|+|||+++..-.
T Consensus 123 tlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 123 TLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 88876311 134568999999999999877644
No 220
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.14 E-value=1.2e-05 Score=69.19 Aligned_cols=126 Identities=21% Similarity=0.264 Sum_probs=79.8
Q ss_pred ccchHHHHHHHHhccCCCcCCCCCccEEEeecccc--HHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCC
Q 023787 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIG--RITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDM 210 (277)
Q Consensus 135 ~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG--~~s~~l~~~~-~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~ 210 (277)
....+.|+.+.+..+..+ ..-...||||||-= ..+-.+++.. +. +|+.||..|..+..++..+..+
T Consensus 49 ar~nR~Fl~RaVr~la~~---~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~------- 118 (267)
T PF04672_consen 49 ARANRAFLRRAVRYLAEE---AGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN------- 118 (267)
T ss_dssp HHHHHHHHHHHHHHHHCT---T---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT--------
T ss_pred HHHHHHHHHHHHHHHHHh---cCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC-------
Confidence 455567777766544331 13357999999932 3344455443 33 8999999999999999998873
Q ss_pred Ccc--eeEEEcCCCCCC--CC----CCcee-----EEecchhhhcCCh-hhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 211 HKA--TNFFCVPLQDFT--PE----TGRYD-----VIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 211 ~~~--~~~~~~d~~~~~--~~----~~~fD-----~Vi~~~~l~~~~~-~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
.+ ..++.+|+.+.. +. .+-+| .|++..++||+++ ++...+++.+...|.||.+|+|+-.+
T Consensus 119 -~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 119 -PRGRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp -TTSEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred -CCccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 34 789999987642 00 12233 5778889999986 67999999999999999999998544
No 221
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.14 E-value=7e-07 Score=73.12 Aligned_cols=96 Identities=23% Similarity=0.261 Sum_probs=57.5
Q ss_pred CCccEEEeeccccHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC------C--C
Q 023787 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF------T--P 226 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~--~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~--~ 226 (277)
.+.+|||+||++|.++..++.+. ..+|+++|+.+. . . ...+.++++|+.+. . .
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~---~--------~~~~~~i~~d~~~~~~~~~i~~~~ 85 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------D---P--------LQNVSFIQGDITNPENIKDIRKLL 85 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------G---S---------TTEEBTTGGGEEEEHSHHGGGSH
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc------c---c--------ccceeeeecccchhhHHHhhhhhc
Confidence 56899999999999999888777 348999999865 0 0 11233333332211 1 1
Q ss_pred --CCCceeEEecchhhhcCCh---------hhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 227 --ETGRYDVIWVQWCIGHLTD---------DDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 227 --~~~~fD~Vi~~~~l~~~~~---------~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
...+||+|+|-.+...... .-....+.-+...|+|||.+++.-
T Consensus 86 ~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 86 PESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp GTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred cccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 1258999998773322211 123445566667899999988863
No 222
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.10 E-value=2.1e-06 Score=68.70 Aligned_cols=72 Identities=18% Similarity=0.337 Sum_probs=52.8
Q ss_pred cEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCc-eeEEec
Q 023787 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGR-YDVIWV 236 (277)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~-fD~Vi~ 236 (277)
.|+|+.||.|..+..+++. +.+|+++|+++..++.|+.++.-.|. ..+++|+++|..+.. ..... ||+|++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv-----~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGV-----ADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT------GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 6899999999999999865 55799999999999999999887654 568999999987653 11112 899995
Q ss_pred c
Q 023787 237 Q 237 (277)
Q Consensus 237 ~ 237 (277)
+
T Consensus 76 S 76 (163)
T PF09445_consen 76 S 76 (163)
T ss_dssp -
T ss_pred C
Confidence 5
No 223
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.08 E-value=2.1e-05 Score=65.70 Aligned_cols=112 Identities=18% Similarity=0.156 Sum_probs=65.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCC-------CCCCCCCCCcceeEEEcCCCCCCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAP-------ENHMAPDMHKATNFFCVPLQDFTP 226 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~-------~~~~~~~~~~~~~~~~~d~~~~~~ 226 (277)
..++...+|||||.|......+.. .+.+.+|||+.+...+.|+..... .+. ....+++..+|+.+.+.
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~----~~~~v~l~~gdfl~~~~ 115 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK----RPGKVELIHGDFLDPDF 115 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB-------EEEEECS-TTTHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc----ccccceeeccCccccHh
Confidence 567889999999999987766543 455799999999988877653321 111 12467778888776431
Q ss_pred C---CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 227 E---TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 227 ~---~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
. -...|+|++++.. ++ +++...|.+....||+|-+++-.....+
T Consensus 116 ~~~~~s~AdvVf~Nn~~--F~-~~l~~~L~~~~~~lk~G~~IIs~~~~~~ 162 (205)
T PF08123_consen 116 VKDIWSDADVVFVNNTC--FD-PDLNLALAELLLELKPGARIISTKPFCP 162 (205)
T ss_dssp HHHHGHC-SEEEE--TT--T--HHHHHHHHHHHTTS-TT-EEEESS-SS-
T ss_pred HhhhhcCCCEEEEeccc--cC-HHHHHHHHHHHhcCCCCCEEEECCCcCC
Confidence 1 0246999998764 22 4666777888899999988876555544
No 224
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.07 E-value=1.4e-05 Score=76.28 Aligned_cols=79 Identities=15% Similarity=0.131 Sum_probs=53.6
Q ss_pred CCccEEEeeccccHHHHHHHHhCC---------CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC---
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF---------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--- 224 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~---------~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~--- 224 (277)
...+|||.|||+|.+...++.... ..++|+|+++..+..++.++...+. ...+..+.|....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~------~~~~i~~~d~l~~~~~ 104 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL------LEINVINFNSLSYVLL 104 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC------CCceeeeccccccccc
Confidence 456999999999999988876542 2689999999999999998765431 1122233322111
Q ss_pred --CCCCCceeEEecchhhh
Q 023787 225 --TPETGRYDVIWVQWCIG 241 (277)
Q Consensus 225 --~~~~~~fD~Vi~~~~l~ 241 (277)
....+.||+|+++-...
T Consensus 105 ~~~~~~~~fD~IIgNPPy~ 123 (524)
T TIGR02987 105 NIESYLDLFDIVITNPPYG 123 (524)
T ss_pred ccccccCcccEEEeCCCcc
Confidence 11125899999886544
No 225
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.06 E-value=1.7e-05 Score=65.84 Aligned_cols=89 Identities=19% Similarity=0.267 Sum_probs=64.7
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC---CCCceeE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---ETGRYDV 233 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~fD~ 233 (277)
...++|||||=+......- ...+ .|+.||+++ ..-.+.+.|+-+.|. +.++||+
T Consensus 51 ~~lrlLEVGals~~N~~s~-~~~f-dvt~IDLns---------------------~~~~I~qqDFm~rplp~~~~e~Fdv 107 (219)
T PF11968_consen 51 PKLRLLEVGALSTDNACST-SGWF-DVTRIDLNS---------------------QHPGILQQDFMERPLPKNESEKFDV 107 (219)
T ss_pred ccceEEeecccCCCCcccc-cCce-eeEEeecCC---------------------CCCCceeeccccCCCCCCcccceeE
Confidence 3479999999755433311 1234 599999974 112235566665543 3579999
Q ss_pred EecchhhhcCC-hhhHHHHHHHHHhcCCCCcE-----EEEE
Q 023787 234 IWVQWCIGHLT-DDDFVSFFKRAKVGLKPGGF-----FVLK 268 (277)
Q Consensus 234 Vi~~~~l~~~~-~~d~~~~l~~~~r~LkpGG~-----lii~ 268 (277)
|.++.||.++| +.+.-.+++++.+.|+|+|. ++++
T Consensus 108 Is~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlV 148 (219)
T PF11968_consen 108 ISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLV 148 (219)
T ss_pred EEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEE
Confidence 99999999999 45577899999999999999 7776
No 226
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.05 E-value=2.4e-05 Score=77.17 Aligned_cols=108 Identities=15% Similarity=0.109 Sum_probs=78.2
Q ss_pred CCCccEEEeeccccHHHHHHHHhC-------------------------------------------CCcEEEEeCCHHH
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY-------------------------------------------FNEVDLLEPVSHF 192 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-------------------------------------------~~~v~gvD~S~~~ 192 (277)
.++..++|-+||+|.+....+... ..+++|+|+++.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 356799999999999987765420 0158999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC--CCceeEEecchhhhc-CC-hhhHHHHHHHHHhcCC---CCcEE
Q 023787 193 LDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDVIWVQWCIGH-LT-DDDFVSFFKRAKVGLK---PGGFF 265 (277)
Q Consensus 193 l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~fD~Vi~~~~l~~-~~-~~d~~~~l~~~~r~Lk---pGG~l 265 (277)
++.|++++...++ ...+.+.++|+.+++.+ .++||+|+++..... +. ..++..+...+.+.++ +|+.+
T Consensus 269 v~~A~~N~~~~g~-----~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~ 343 (702)
T PRK11783 269 IQAARKNARRAGV-----AELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNA 343 (702)
T ss_pred HHHHHHHHHHcCC-----CcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeE
Confidence 9999999988766 45688999999887643 357999999976432 22 2344455555444444 88887
Q ss_pred EEE
Q 023787 266 VLK 268 (277)
Q Consensus 266 ii~ 268 (277)
++.
T Consensus 344 ~ll 346 (702)
T PRK11783 344 ALF 346 (702)
T ss_pred EEE
Confidence 664
No 227
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.01 E-value=3.7e-05 Score=66.84 Aligned_cols=100 Identities=12% Similarity=0.120 Sum_probs=74.0
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCC---Cce
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---GRY 231 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~f 231 (277)
..++..|||+|+|+|.+|..+++.+ .+++++|+++.+.+..++++.. ..+++++..|+.++.... ...
T Consensus 28 ~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~--------~~~~~vi~~D~l~~~~~~~~~~~~ 98 (262)
T PF00398_consen 28 LSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS--------NPNVEVINGDFLKWDLYDLLKNQP 98 (262)
T ss_dssp CGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT--------CSSEEEEES-TTTSCGGGHCSSSE
T ss_pred CCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh--------cccceeeecchhccccHHhhcCCc
Confidence 4477899999999999999999887 6799999999999999998874 467999999999887543 456
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCC---CcEEEEE
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKP---GGFFVLK 268 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~Lkp---GG~lii~ 268 (277)
..|+++... +++. .++.++...-+. ...+++.
T Consensus 99 ~~vv~NlPy-~is~----~il~~ll~~~~~g~~~~~l~vq 133 (262)
T PF00398_consen 99 LLVVGNLPY-NISS----PILRKLLELYRFGRVRMVLMVQ 133 (262)
T ss_dssp EEEEEEETG-TGHH----HHHHHHHHHGGGCEEEEEEEEE
T ss_pred eEEEEEecc-cchH----HHHHHHhhcccccccceEEEEe
Confidence 778877665 4442 455555442232 3455554
No 228
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.00 E-value=2.2e-05 Score=63.89 Aligned_cols=102 Identities=17% Similarity=0.083 Sum_probs=76.3
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
-.+++|||+|+|+|..+...+..+...|+..|+.|......+-|.+.++ ..+.+...|... ++..||+|+
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ang-------v~i~~~~~d~~g---~~~~~Dl~L 147 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANG-------VSILFTHADLIG---SPPAFDLLL 147 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcc-------ceeEEeeccccC---CCcceeEEE
Confidence 4678999999999999998888888899999999888888777776653 457777777765 346899999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCc-EEEEEec
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGG-FFVLKEN 270 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG-~lii~e~ 270 (277)
...++..-+ .-..++. +.+.|+..| .+++-++
T Consensus 148 agDlfy~~~--~a~~l~~-~~~~l~~~g~~vlvgdp 180 (218)
T COG3897 148 AGDLFYNHT--EADRLIP-WKDRLAEAGAAVLVGDP 180 (218)
T ss_pred eeceecCch--HHHHHHH-HHHHHHhCCCEEEEeCC
Confidence 999876544 3446666 555555555 4444443
No 229
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.97 E-value=5e-05 Score=62.73 Aligned_cols=104 Identities=19% Similarity=0.168 Sum_probs=79.1
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCceeE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~ 233 (277)
.++.+||++|-|-|.....+-++-+.+-+.++..|..++..+...-.. ..++....+-.++.. .+++.||-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e-------k~nViil~g~WeDvl~~L~d~~FDG 172 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE-------KENVIILEGRWEDVLNTLPDKHFDG 172 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc-------ccceEEEecchHhhhccccccCcce
Confidence 578999999999999988777666778899999999999998865432 245656665444432 45678999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
|+---.-.+- +|+..+.+.+.|+|||+|++-+-
T Consensus 173 I~yDTy~e~y--Edl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 173 IYYDTYSELY--EDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred eEeechhhHH--HHHHHHHHHHhhhcCCCceEEEe
Confidence 9854332332 47888999999999999998775
No 230
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.96 E-value=6e-06 Score=68.26 Aligned_cols=76 Identities=17% Similarity=0.211 Sum_probs=62.5
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC----CCCCCcee
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~fD 232 (277)
....|+|.-||.|..+..++.+++. |+++|++|.-+..|+.+++--|. ..+++|+++|+.++ .+....+|
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~-VisIdiDPikIa~AkhNaeiYGI-----~~rItFI~GD~ld~~~~lq~~K~~~~ 167 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY-VIAIDIDPVKIACARHNAEVYGV-----PDRITFICGDFLDLASKLKADKIKYD 167 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe-EEEEeccHHHHHHHhccceeecC-----CceeEEEechHHHHHHHHhhhhheee
Confidence 4568999999999999999988775 99999999999999999987666 56899999998764 24444577
Q ss_pred EEecch
Q 023787 233 VIWVQW 238 (277)
Q Consensus 233 ~Vi~~~ 238 (277)
+|+.+.
T Consensus 168 ~vf~sp 173 (263)
T KOG2730|consen 168 CVFLSP 173 (263)
T ss_pred eeecCC
Confidence 887553
No 231
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.91 E-value=8.3e-05 Score=58.40 Aligned_cols=86 Identities=17% Similarity=0.227 Sum_probs=59.5
Q ss_pred CCCCccEEEeeccccHHHHHHHH-----hCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLI-----RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG 229 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~-----~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 229 (277)
..+..+|+|+|||.|.++..++. ....+|+++|.++..++.+.++....+. ....+..+...+..+... ..
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~ 98 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGS---DLEKRLSFIQGDIADESS-SD 98 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcc---hhhccchhhccchhhhcc-cC
Confidence 35678999999999999998887 4333899999999999999888765331 112345556665544322 35
Q ss_pred ceeEEecchhhhcCC
Q 023787 230 RYDVIWVQWCIGHLT 244 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~ 244 (277)
..++++.-.+-..++
T Consensus 99 ~~~~~vgLHaCG~Ls 113 (141)
T PF13679_consen 99 PPDILVGLHACGDLS 113 (141)
T ss_pred CCeEEEEeecccchH
Confidence 677777665554444
No 232
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.90 E-value=4.2e-05 Score=69.33 Aligned_cols=78 Identities=21% Similarity=0.215 Sum_probs=53.0
Q ss_pred cEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--------------
Q 023787 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------------- 225 (277)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------------- 225 (277)
+|||+-||.|.++..++ ..+.+|+|||+++.+++.|++++..+++ .+++|+.++.+++.
T Consensus 199 ~vlDlycG~G~fsl~la-~~~~~V~gvE~~~~av~~A~~Na~~N~i------~n~~f~~~~~~~~~~~~~~~r~~~~~~~ 271 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLA-KKAKKVIGVEIVEEAVEDARENAKLNGI------DNVEFIRGDAEDFAKALAKAREFNRLKG 271 (352)
T ss_dssp EEEEES-TTTCCHHHHH-CCSSEEEEEES-HHHHHHHHHHHHHTT--------SEEEEE--SHHCCCHHCCS-GGTTGGG
T ss_pred cEEEEeecCCHHHHHHH-hhCCeEEEeeCCHHHHHHHHHHHHHcCC------CcceEEEeeccchhHHHHhhHHHHhhhh
Confidence 79999999999999877 5556799999999999999999988765 57888887655432
Q ss_pred --CCCCceeEEecchhhhcCC
Q 023787 226 --PETGRYDVIWVQWCIGHLT 244 (277)
Q Consensus 226 --~~~~~fD~Vi~~~~l~~~~ 244 (277)
.....+|+|+.-..=..+.
T Consensus 272 ~~~~~~~~d~vilDPPR~G~~ 292 (352)
T PF05958_consen 272 IDLKSFKFDAVILDPPRAGLD 292 (352)
T ss_dssp S-GGCTTESEEEE---TT-SC
T ss_pred hhhhhcCCCEEEEcCCCCCch
Confidence 1123689988655433333
No 233
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.85 E-value=4.4e-05 Score=59.70 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=45.5
Q ss_pred cEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCC
Q 023787 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (277)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~ 222 (277)
.++|+|||+|..+..++..++. +++++|+++.+.+.+++++..+++ .++.++...+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~------~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL------PNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC------CcEEEEEeeee
Confidence 4899999999999998877765 799999999999999999876543 23555555444
No 234
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=2e-05 Score=62.21 Aligned_cols=134 Identities=16% Similarity=0.111 Sum_probs=80.6
Q ss_pred cccccccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCC-C-cEEEEeCCHHHHHHHHHHhCCCCCCC
Q 023787 130 VNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMA 207 (277)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~-~-~v~gvD~S~~~l~~a~~~~~~~~~~~ 207 (277)
.....+..+++.+...+..... .-.+.+||++|.|--.++-.+..... . .|...|-++..++-.++....+....
T Consensus 5 tgnvciwpseeala~~~l~~~n---~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~ 81 (201)
T KOG3201|consen 5 TGNVCIWPSEEALAWTILRDPN---KIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASS 81 (201)
T ss_pred CCcEEecccHHHHHHHHHhchh---HHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccc
Confidence 3344556666666665543221 33457999999995444443433332 2 89999999999998887765432111
Q ss_pred CCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 208 PDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 208 ~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
...-..+++..-... ...+...||.|+++.++.. ++-...+++.+.++|+|.|.-++.-
T Consensus 82 ~tsc~vlrw~~~~aq-sq~eq~tFDiIlaADClFf--dE~h~sLvdtIk~lL~p~g~Al~fs 140 (201)
T KOG3201|consen 82 LTSCCVLRWLIWGAQ-SQQEQHTFDIILAADCLFF--DEHHESLVDTIKSLLRPSGRALLFS 140 (201)
T ss_pred cceehhhHHHHhhhH-HHHhhCcccEEEeccchhH--HHHHHHHHHHHHHHhCcccceeEec
Confidence 110000111000000 0123458999999998754 4456789999999999999866653
No 235
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.84 E-value=7.3e-05 Score=62.44 Aligned_cols=73 Identities=16% Similarity=0.075 Sum_probs=54.1
Q ss_pred EEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCC-CCCCCCCCceeEEecch
Q 023787 161 ALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFTPETGRYDVIWVQW 238 (277)
Q Consensus 161 VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~Vi~~~ 238 (277)
|+||||-.|.+..+|++.+.. +++++|+++.-++.|++++...++ ..++++..+|- ..++.. ...|.|+.++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l-----~~~i~~rlgdGL~~l~~~-e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL-----EDRIEVRLGDGLEVLKPG-EDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT------TTTEEEEE-SGGGG--GG-G---EEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----cccEEEEECCcccccCCC-CCCCEEEEec
Confidence 689999999999999988775 799999999999999999988776 56789999884 434322 2379998665
Q ss_pred h
Q 023787 239 C 239 (277)
Q Consensus 239 ~ 239 (277)
+
T Consensus 75 M 75 (205)
T PF04816_consen 75 M 75 (205)
T ss_dssp E
T ss_pred C
Confidence 4
No 236
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.83 E-value=0.00027 Score=63.73 Aligned_cols=110 Identities=15% Similarity=0.079 Sum_probs=83.4
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC----------------------------------------cEEEEeCCHHHHH
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN----------------------------------------EVDLLEPVSHFLD 194 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~----------------------------------------~v~gvD~S~~~l~ 194 (277)
-.++..++|-=||+|.+....+-...+ .++|+|+++.+++
T Consensus 189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~ 268 (381)
T COG0116 189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE 268 (381)
T ss_pred CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence 344568999999999998877655421 2779999999999
Q ss_pred HHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchhhh-cCChh-h----HHHHHHHHHhcCCCCcEEEEE
Q 023787 195 AARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIG-HLTDD-D----FVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 195 ~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~-~~~~~-d----~~~~l~~~~r~LkpGG~lii~ 268 (277)
.|+.|....|+ ...+.|.+.|+.++..+-..+|+|||+.... -+..+ . ...+.+.+++.++--+.++|+
T Consensus 269 ~Ak~NA~~AGv-----~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~t 343 (381)
T COG0116 269 GAKANARAAGV-----GDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFT 343 (381)
T ss_pred HHHHHHHhcCC-----CceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 99999998877 5779999999999875546899999997532 12211 1 334566777888877888876
Q ss_pred e
Q 023787 269 E 269 (277)
Q Consensus 269 e 269 (277)
-
T Consensus 344 t 344 (381)
T COG0116 344 T 344 (381)
T ss_pred c
Confidence 3
No 237
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.83 E-value=0.00014 Score=64.68 Aligned_cols=111 Identities=18% Similarity=0.261 Sum_probs=78.6
Q ss_pred CCCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCC-CCCCCCcceeEEEcCCCCCC-CCCCce
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENH-MAPDMHKATNFFCVPLQDFT-PETGRY 231 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~-~~~~~f 231 (277)
+.-.+||-+|.|.|...+.++ +++ .+++.||+.|.|++.++.+..-... .+...++++..+..|..++. -....|
T Consensus 288 ~~a~~vLvlGGGDGLAlRell-kyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELL-KYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHH-hCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 345689999999999999988 444 4999999999999999844321111 01122568888888887763 223589
Q ss_pred eEEecch------hhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 232 DVIWVQW------CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 232 D~Vi~~~------~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
|+||.-. ++.-+- -.++..-+.+.|+++|.+++.-.
T Consensus 367 D~vIVDl~DP~tps~~rlY---S~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLY---SVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred cEEEEeCCCCCCcchhhhh---hHHHHHHHHHhcCcCceEEEecC
Confidence 9998432 222221 23688889999999999999743
No 238
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=0.00028 Score=64.03 Aligned_cols=109 Identities=21% Similarity=0.172 Sum_probs=81.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC---CCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PET 228 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~---~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~ 228 (277)
+.++.+|||+.++.|.=|.+++..... .|+++|.|+.=++..++++...|. .++.....|...++ ...
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~------~nv~~~~~d~~~~~~~~~~~ 227 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV------RNVIVVNKDARRLAELLPGG 227 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC------CceEEEeccccccccccccc
Confidence 678899999999999999989877653 469999999999999999988765 44666777765543 222
Q ss_pred CceeEEec------chhhhcCC-------hhh-------HHHHHHHHHhcCCCCcEEEEEe
Q 023787 229 GRYDVIWV------QWCIGHLT-------DDD-------FVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 229 ~~fD~Vi~------~~~l~~~~-------~~d-------~~~~l~~~~r~LkpGG~lii~e 269 (277)
++||.|+. .++++--| ..+ ..++|..+.+.|||||.|+.+.
T Consensus 228 ~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 228 EKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred CcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 36999982 23332111 111 4568999999999999999873
No 239
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.81 E-value=8.8e-05 Score=65.95 Aligned_cols=88 Identities=17% Similarity=0.088 Sum_probs=61.4
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..++.++|||||++|.++..+++++. +|++||.++ |-. .+.. ..++.....|...+.++.+.+|++
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~~----~L~~--------~~~V~h~~~d~fr~~p~~~~vDwv 274 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MAQ----SLMD--------TGQVEHLRADGFKFRPPRKNVDWL 274 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cCH----hhhC--------CCCEEEEeccCcccCCCCCCCCEE
Confidence 35788999999999999999998887 699999653 222 2222 356777777766665435789999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCC
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPG 262 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpG 262 (277)
+|-.+- ....+.+-+.+.|..|
T Consensus 275 VcDmve------~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 275 VCDMVE------KPARVAELMAQWLVNG 296 (357)
T ss_pred EEeccc------CHHHHHHHHHHHHhcC
Confidence 987663 2335555555555444
No 240
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=0.00013 Score=60.43 Aligned_cols=100 Identities=18% Similarity=0.097 Sum_probs=70.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (277)
..++.+|+|+||-.|.++..+++.... .|+++|+-|-- ...++.++++|+++-.
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------------~~~~V~~iq~d~~~~~~~~~l~~ 105 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------------PIPGVIFLQGDITDEDTLEKLLE 105 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------------cCCCceEEeeeccCccHHHHHHH
Confidence 457899999999999999977776554 49999986411 1356889999988754
Q ss_pred -CCCCceeEEecchhh--------hcCChhh-HHHHHHHHHhcCCCCcEEEEEecC
Q 023787 226 -PETGRYDVIWVQWCI--------GHLTDDD-FVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 226 -~~~~~fD~Vi~~~~l--------~~~~~~d-~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
.....+|+|+|-..- +|..... ...++.-+..+|+|||.+++..--
T Consensus 106 ~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 106 ALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred HcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 233457999955432 3332222 334566677899999999987543
No 241
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=6.2e-05 Score=63.27 Aligned_cols=98 Identities=24% Similarity=0.191 Sum_probs=72.3
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC--CCcee
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~fD 232 (277)
..++..+||+|+.||.+|..+++++...|+++|..-.++.+--++- ...+.+...++..+..+ .+..|
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d----------~rV~~~E~tN~r~l~~~~~~~~~d 146 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRND----------PRVIVLERTNVRYLTPEDFTEKPD 146 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcC----------CcEEEEecCChhhCCHHHcccCCC
Confidence 3467899999999999999999999999999999987777543331 12233344455544311 13678
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
+|+|--+|. .+..+|..+..+++|+|-++.
T Consensus 147 ~~v~DvSFI-----SL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 147 LIVIDVSFI-----SLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred eEEEEeehh-----hHHHHHHHHHHhcCCCceEEE
Confidence 999887765 345899999999999997765
No 242
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.75 E-value=7.4e-05 Score=64.92 Aligned_cols=106 Identities=19% Similarity=0.216 Sum_probs=66.4
Q ss_pred CCccEEEeeccccHHHHHHHHh--CCC-cEEEEeCCHHHHHHHHHHhC-CCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 157 QHLVALDCGSGIGRITKNLLIR--YFN-EVDLLEPVSHFLDAARESLA-PENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~--~~~-~v~gvD~S~~~l~~a~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
.+.+|+=||||.=-+|..++.. +.. .|+++|+++..++.+++-.. ..++ ..++.|+++|..+...+-..||
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L-----~~~m~f~~~d~~~~~~dl~~~D 194 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL-----SKRMSFITADVLDVTYDLKEYD 194 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH------SSEEEEES-GGGG-GG----S
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc-----cCCeEEEecchhccccccccCC
Confidence 4569999999987776666543 222 69999999999999998776 3333 4678999999876654446899
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|+.+.... ++.++-.++|.++.+.++||..+++.
T Consensus 195 vV~lAalVg-~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 195 VVFLAALVG-MDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp EEEE-TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred EEEEhhhcc-cccchHHHHHHHHHhhCCCCcEEEEe
Confidence 998766543 33346678999999999999999886
No 243
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.74 E-value=0.00034 Score=58.44 Aligned_cols=104 Identities=14% Similarity=0.003 Sum_probs=69.0
Q ss_pred cCCCCCccEEEeeccccHHHHHHHHhCC-C-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC---CC
Q 023787 153 ARNNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PE 227 (277)
Q Consensus 153 ~~~~~~~~VLDiGcGtG~~s~~l~~~~~-~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~ 227 (277)
....++.+||-+|+.+|....++..--. . .|++|+.|+...+..-...+. ..|+--+..|+..-. .-
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~--------R~NIiPIl~DAr~P~~Y~~l 140 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK--------RPNIIPILEDARHPEKYRML 140 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH--------STTEEEEES-TTSGGGGTTT
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc--------CCceeeeeccCCChHHhhcc
Confidence 3467889999999999999998876533 2 799999999655444333322 356666677776421 22
Q ss_pred CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
-+.+|+|++--+- +++..-++.++...||+||.++++
T Consensus 141 v~~VDvI~~DVaQ----p~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 141 VEMVDVIFQDVAQ----PDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp S--EEEEEEE-SS----TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccEEEecCCC----hHHHHHHHHHHHhhccCCcEEEEE
Confidence 3589999876551 235667889999999999999876
No 244
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.69 E-value=1.6e-05 Score=62.28 Aligned_cols=55 Identities=25% Similarity=0.393 Sum_probs=46.5
Q ss_pred eeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 214 ~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+++.+-......|.+++.|+|++..++.|++-++...++++|+|.|||||++-++
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEE
Confidence 3444444445567789999999999999999889999999999999999999886
No 245
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=5.2e-05 Score=66.90 Aligned_cols=117 Identities=15% Similarity=0.043 Sum_probs=72.8
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
.+.+|||+|.|.|.....+..-.+. .++.++.|+..-+..-.......... ...+..-+..|-..++.. ..|++|
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~--td~r~s~vt~dRl~lp~a-d~ytl~ 189 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEK--TDWRASDVTEDRLSLPAA-DLYTLA 189 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccccc--CCCCCCccchhccCCCcc-ceeehh
Confidence 4567999999999877655443443 78889999876665544332211100 011111122233333333 478887
Q ss_pred ecchhhhcCC-hhhHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 023787 235 WVQWCIGHLT-DDDFVSFFKRAKVGLKPGGFFVLKENIARSDI 276 (277)
Q Consensus 235 i~~~~l~~~~-~~d~~~~l~~~~r~LkpGG~lii~e~~~~~~~ 276 (277)
+...-+-+.. ...+...++.+..++.|||.|+|.|.-++.+|
T Consensus 190 i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf 232 (484)
T COG5459 190 IVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGF 232 (484)
T ss_pred hhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhH
Confidence 7766555543 33356689999999999999999998776654
No 246
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.63 E-value=1.7e-05 Score=58.97 Aligned_cols=99 Identities=21% Similarity=0.265 Sum_probs=42.7
Q ss_pred EEeeccccHHHHHHHHhCC----CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCceeEEe
Q 023787 162 LDCGSGIGRITKNLLIRYF----NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVIW 235 (277)
Q Consensus 162 LDiGcGtG~~s~~l~~~~~----~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~Vi 235 (277)
||||+..|..+..+++... .+++++|..+. .+..++..+..++ ..++.++.++..+.- ++.++||+|+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~-----~~~~~~~~g~s~~~l~~~~~~~~dli~ 74 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGL-----SDRVEFIQGDSPDFLPSLPDGPIDLIF 74 (106)
T ss_dssp --------------------------EEEESS-------------GGG------BTEEEEES-THHHHHHHHH--EEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCC-----CCeEEEEEcCcHHHHHHcCCCCEEEEE
Confidence 6899999999988775422 16999999985 2222233222222 356889998876542 2246899999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.-.. |- .+.....+..+...|+|||++++-|
T Consensus 75 iDg~--H~-~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 75 IDGD--HS-YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp EES------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred ECCC--CC-HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 7653 11 1245578899999999999998865
No 247
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.60 E-value=0.00014 Score=59.23 Aligned_cols=109 Identities=17% Similarity=0.178 Sum_probs=68.5
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC-CC-cEEEEeCCHH----------HHHHHHHHhCCCCCCCCCCCcceeEEEcCCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY-FN-EVDLLEPVSH----------FLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~~-~v~gvD~S~~----------~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~ 222 (277)
..++.+|+|+=-|.|.++..+.... +. .|+++=+.+. +-..+++.. ..|.+.+..++.
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~----------~aN~e~~~~~~~ 115 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV----------YANVEVIGKPLV 115 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh----------hhhhhhhCCccc
Confidence 5688999999999999999665432 22 5666543322 111121111 233444445555
Q ss_pred CCCCCCCceeEEecchhhhcC-----ChhhHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 023787 223 DFTPETGRYDVIWVQWCIGHL-----TDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (277)
Q Consensus 223 ~~~~~~~~fD~Vi~~~~l~~~-----~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (277)
.+. .++..|+++.+..-|-+ .......+.+.+++.|||||++.+.|+....
T Consensus 116 A~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~p 171 (238)
T COG4798 116 ALG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADP 171 (238)
T ss_pred ccC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccC
Confidence 554 33567777764433322 2334678999999999999999999997543
No 248
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.00084 Score=57.51 Aligned_cols=98 Identities=13% Similarity=0.026 Sum_probs=76.7
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC--CCc
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGR 230 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~ 230 (277)
..++.+|||-|.|+|.++.++++.... ++.-+|+...-.+.|++.++..+. ..++++..-|+....+. ...
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi-----~~~vt~~hrDVc~~GF~~ks~~ 177 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI-----GDNVTVTHRDVCGSGFLIKSLK 177 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC-----CcceEEEEeecccCCccccccc
Confidence 678999999999999999999876543 899999999999999999988775 67899999888876543 467
Q ss_pred eeEEecchhhhcCChhhHHHHHHHHHhcCCCCcE
Q 023787 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGF 264 (277)
Q Consensus 231 fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~ 264 (277)
+|.|+.-.. ..-.++-.++.+||.+|.
T Consensus 178 aDaVFLDlP-------aPw~AiPha~~~lk~~g~ 204 (314)
T KOG2915|consen 178 ADAVFLDLP-------APWEAIPHAAKILKDEGG 204 (314)
T ss_pred cceEEEcCC-------ChhhhhhhhHHHhhhcCc
Confidence 888875433 223566666667887663
No 249
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=9.8e-05 Score=68.32 Aligned_cols=75 Identities=17% Similarity=0.135 Sum_probs=59.6
Q ss_pred HHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEc
Q 023787 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (277)
Q Consensus 140 ~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 219 (277)
+.+-..+.+... .+.+..++|+-||||.++..++ ++..+|+||++++..++.|+.+...++. .|.+|+++
T Consensus 369 evLys~i~e~~~---l~~~k~llDv~CGTG~iglala-~~~~~ViGvEi~~~aV~dA~~nA~~Ngi------sNa~Fi~g 438 (534)
T KOG2187|consen 369 EVLYSTIGEWAG---LPADKTLLDVCCGTGTIGLALA-RGVKRVIGVEISPDAVEDAEKNAQINGI------SNATFIVG 438 (534)
T ss_pred HHHHHHHHHHhC---CCCCcEEEEEeecCCceehhhh-ccccceeeeecChhhcchhhhcchhcCc------cceeeeec
Confidence 334444554444 5677899999999999999776 6666899999999999999999998876 68899998
Q ss_pred CCCCC
Q 023787 220 PLQDF 224 (277)
Q Consensus 220 d~~~~ 224 (277)
-.++.
T Consensus 439 qaE~~ 443 (534)
T KOG2187|consen 439 QAEDL 443 (534)
T ss_pred chhhc
Confidence 55443
No 250
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.43 E-value=0.00067 Score=59.60 Aligned_cols=82 Identities=17% Similarity=0.157 Sum_probs=48.1
Q ss_pred CccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCC-CCCCCCCCcceeEEEcC----CCC-CCCCCCc
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFCVP----LQD-FTPETGR 230 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~d----~~~-~~~~~~~ 230 (277)
..++||||||....-..|..+.+. +++|+|+++..++.|++++..+ ++ ..++..+... +.. +..+...
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L-----~~~I~l~~~~~~~~i~~~i~~~~e~ 177 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNL-----ESRIELRKQKNPDNIFDGIIQPNER 177 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T------TTTEEEEE--ST-SSTTTSTT--S-
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhcccc-----ccceEEEEcCCccccchhhhcccce
Confidence 578999999988665445444333 7999999999999999999887 55 4567766542 211 2223468
Q ss_pred eeEEecchhhhcCC
Q 023787 231 YDVIWVQWCIGHLT 244 (277)
Q Consensus 231 fD~Vi~~~~l~~~~ 244 (277)
||+.+|+..|+.-.
T Consensus 178 ~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 178 FDFTMCNPPFYSSQ 191 (299)
T ss_dssp EEEEEE-----SS-
T ss_pred eeEEecCCccccCh
Confidence 99999999987654
No 251
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.42 E-value=0.00016 Score=67.00 Aligned_cols=101 Identities=14% Similarity=0.225 Sum_probs=65.4
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHH----HHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCce
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSH----FLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~----~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 231 (277)
..-..|+|..+|.|.++..|.+.. |+....-|. .+... -+.|+ +-.++.=-+.++.-+.+|
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~~---VWVMNVVP~~~~ntL~vI----ydRGL--------IG~yhDWCE~fsTYPRTY 428 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDDP---VWVMNVVPVSGPNTLPVI----YDRGL--------IGVYHDWCEAFSTYPRTY 428 (506)
T ss_pred cceeeeeeecccccHHHHHhccCC---ceEEEecccCCCCcchhh----hhccc--------chhccchhhccCCCCcch
Confidence 344689999999999999886442 444443332 11111 11122 111211123333334899
Q ss_pred eEEecchhhhcCC-hhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 232 DVIWVQWCIGHLT-DDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 232 D~Vi~~~~l~~~~-~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
|+|.+..+|.... .-++..++-++.|+|+|||.++|.|.+
T Consensus 429 DLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~ 469 (506)
T PF03141_consen 429 DLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV 469 (506)
T ss_pred hheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH
Confidence 9999999887654 335788999999999999999998864
No 252
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.35 E-value=0.00044 Score=60.79 Aligned_cols=109 Identities=19% Similarity=0.148 Sum_probs=79.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCc
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGR 230 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~ 230 (277)
+.++.+|||+.++.|.=+..++.... ..+++.|+++.-+...++++...|. .++.....|..... .....
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~------~~v~~~~~D~~~~~~~~~~~~ 156 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV------FNVIVINADARKLDPKKPESK 156 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-------SSEEEEESHHHHHHHHHHTTT
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC------ceEEEEeeccccccccccccc
Confidence 56788999999999999998888765 3899999999999999988877654 45666656655541 12236
Q ss_pred eeEEec----ch--hhhcCCh-------hh-------HHHHHHHHHhcC----CCCcEEEEEe
Q 023787 231 YDVIWV----QW--CIGHLTD-------DD-------FVSFFKRAKVGL----KPGGFFVLKE 269 (277)
Q Consensus 231 fD~Vi~----~~--~l~~~~~-------~d-------~~~~l~~~~r~L----kpGG~lii~e 269 (277)
||.|+. +. ++..-++ .+ ...+|+++.+.+ ||||+++.+.
T Consensus 157 fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 157 FDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp EEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred cchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 999982 22 2332221 11 356899999999 9999999873
No 253
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.33 E-value=0.00088 Score=58.49 Aligned_cols=110 Identities=19% Similarity=0.261 Sum_probs=72.2
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhC---C--------------------CCCCCCCC--
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA---P--------------------ENHMAPDM-- 210 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~---~--------------------~~~~~~~~-- 210 (277)
....+||-=|||.|+++..++..++. +-|=++|--|+=...-.+. . +.+....+
T Consensus 149 r~ki~iLvPGaGlGRLa~dla~~G~~-~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 149 RTKIRILVPGAGLGRLAYDLACLGFK-CQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred ccCceEEecCCCchhHHHHHHHhccc-ccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 45679999999999999999988886 7777888887655433221 0 00000000
Q ss_pred -------CcceeE--EEcCCCCCCC---CCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 211 -------HKATNF--FCVPLQDFTP---ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 211 -------~~~~~~--~~~d~~~~~~---~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.....| -.+|+.+.-. ..++||+|+.++.+.... +...+++.+..+|||||+.+-.
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~--NileYi~tI~~iLk~GGvWiNl 295 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAH--NILEYIDTIYKILKPGGVWINL 295 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechH--HHHHHHHHHHHhccCCcEEEec
Confidence 000111 2234433211 124799999998776544 7889999999999999998753
No 254
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.32 E-value=0.00049 Score=53.57 Aligned_cols=80 Identities=16% Similarity=0.213 Sum_probs=57.2
Q ss_pred cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCceeEEecchhhhcCCh---------hhHHH
Q 023787 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVIWVQWCIGHLTD---------DDFVS 250 (277)
Q Consensus 182 ~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~Vi~~~~l~~~~~---------~d~~~ 250 (277)
+|+++|+-+.+++..++++...+. ..+++++..+=+++. .+.+++|+|+.+.. |+|- +.-..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~-----~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~ 73 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL-----EDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLK 73 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT------GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC-----CCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHH
Confidence 589999999999999999988665 357888887655543 12258999997754 4432 23567
Q ss_pred HHHHHHhcCCCCcEEEEE
Q 023787 251 FFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 251 ~l~~~~r~LkpGG~lii~ 268 (277)
+++.+.++|+|||.+.+.
T Consensus 74 Al~~al~lL~~gG~i~iv 91 (140)
T PF06962_consen 74 ALEAALELLKPGGIITIV 91 (140)
T ss_dssp HHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHhhccCCEEEEE
Confidence 889999999999999986
No 255
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.0062 Score=50.13 Aligned_cols=115 Identities=13% Similarity=0.058 Sum_probs=78.1
Q ss_pred HHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcC
Q 023787 142 LQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220 (277)
Q Consensus 142 l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d 220 (277)
|...+...+......++.+||=+|+.+|....++..--.. .+++|++|+.+....-..+.. ..|+--+..|
T Consensus 61 LaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~--------R~Ni~PIL~D 132 (231)
T COG1889 61 LAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK--------RPNIIPILED 132 (231)
T ss_pred HHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh--------CCCceeeecc
Confidence 3333433444445788999999999999999888755333 799999999987766655554 3455556667
Q ss_pred CCCCC---CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 221 LQDFT---PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 221 ~~~~~---~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+..-. .--+..|+|+.--+ .+++..-+..++...||+||.++++
T Consensus 133 A~~P~~Y~~~Ve~VDviy~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 133 ARKPEKYRHLVEKVDVIYQDVA----QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred cCCcHHhhhhcccccEEEEecC----CchHHHHHHHHHHHhcccCCeEEEE
Confidence 65421 11246888875433 1234556788999999999976664
No 256
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.14 E-value=0.0064 Score=50.71 Aligned_cols=78 Identities=17% Similarity=-0.009 Sum_probs=62.2
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.+.++.||||-.|.+..++...+.. .+++.|+++.-++.|.+++...++ ..+++...+|...--..+..+|+|+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l-----~~~i~vr~~dgl~~l~~~d~~d~iv 90 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL-----SERIDVRLGDGLAVLELEDEIDVIV 90 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC-----cceEEEeccCCccccCccCCcCEEE
Confidence 3456999999999999999988765 899999999999999999998777 5677777777633222334799998
Q ss_pred cchh
Q 023787 236 VQWC 239 (277)
Q Consensus 236 ~~~~ 239 (277)
.+++
T Consensus 91 IAGM 94 (226)
T COG2384 91 IAGM 94 (226)
T ss_pred EeCC
Confidence 6654
No 257
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=97.14 E-value=0.0021 Score=54.95 Aligned_cols=111 Identities=14% Similarity=0.086 Sum_probs=67.4
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC---CCCCCCc-ee
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD---FTPETGR-YD 232 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~-fD 232 (277)
...+||++|+|+|..+..++.....+|...|+...+ +..+.+...++.........+.....+..+ ..+-... ||
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~-~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVV-ENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhH-HHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 456799999999988886665566678888875443 333333222111100101123333333222 2211123 99
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+|+++.++.+-. ....++..++..|..+|++++.-.
T Consensus 165 lilasDvvy~~~--~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 165 LILASDVVYEEE--SFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred EEEEeeeeecCC--cchhHHHHHHHHHhcCCeEEEEEe
Confidence 999999987654 566888889999999997766543
No 258
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.07 E-value=0.0015 Score=57.69 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=59.8
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----CCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PET 228 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~ 228 (277)
..++..++|.-||.|..+..++.... .+|+|+|.++.+++.+++++... ..++.++++++.++. ...
T Consensus 18 ~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~-------~~R~~~i~~nF~~l~~~l~~~~~ 90 (305)
T TIGR00006 18 IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF-------EGRVVLIHDNFANFFEHLDELLV 90 (305)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc-------CCcEEEEeCCHHHHHHHHHhcCC
Confidence 45677999999999999999997753 48999999999999999987642 246888888877653 123
Q ss_pred CceeEEecc
Q 023787 229 GRYDVIWVQ 237 (277)
Q Consensus 229 ~~fD~Vi~~ 237 (277)
.++|.|+..
T Consensus 91 ~~vDgIl~D 99 (305)
T TIGR00006 91 TKIDGILVD 99 (305)
T ss_pred CcccEEEEe
Confidence 568888843
No 259
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.04 E-value=0.0059 Score=53.42 Aligned_cols=100 Identities=17% Similarity=0.133 Sum_probs=67.6
Q ss_pred cEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC--CCceeEEecc
Q 023787 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDVIWVQ 237 (277)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~fD~Vi~~ 237 (277)
+++|+-||.|.++..+...++..+.++|+++..++..+.++... .++.|+.++... ...+|+++..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~------------~~~~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK------------LIEGDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC------------CccCccccCchhhcCCCCCEEEeC
Confidence 69999999999999888888888999999999999999887541 345566665422 2579999965
Q ss_pred hhhhcCCh--------hhHHHHH---HHHHhcCCCCcEEEEEecCCC
Q 023787 238 WCIGHLTD--------DDFVSFF---KRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 238 ~~l~~~~~--------~d~~~~l---~~~~r~LkpGG~lii~e~~~~ 273 (277)
.....++. +....++ -++.+.++|. +++.||+..
T Consensus 70 pPCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g 114 (275)
T cd00315 70 FPCQPFSIAGKRKGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKG 114 (275)
T ss_pred CCChhhhHHhhcCCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcc
Confidence 43322210 1111222 2344445665 778899854
No 260
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.02 E-value=0.0014 Score=59.77 Aligned_cols=100 Identities=16% Similarity=0.141 Sum_probs=66.5
Q ss_pred CccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC-CCceeEEec
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWV 236 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~Vi~ 236 (277)
...|||||.|||.++....+.+...|++++.=..|.+.|++....+|. ..+++.+..--++.... ..+-|+++.
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~-----SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGM-----SDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCC-----ccceeeeccccceeeecCcchhhhhhH
Confidence 357899999999999977777888999999999999999999988877 35566655433333211 134666665
Q ss_pred chhhhcCChhhHHHHHHHHHhcC-CCC
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGL-KPG 262 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~L-kpG 262 (277)
....-.+.-+.....++++++.| +||
T Consensus 142 e~fdtEligeGalps~qhAh~~L~~~n 168 (636)
T KOG1501|consen 142 EDFDTELIGEGALPSLQHAHDMLLVDN 168 (636)
T ss_pred hhhhhhhhccccchhHHHHHHHhcccC
Confidence 44433332222334455555554 444
No 261
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.99 E-value=0.0016 Score=53.50 Aligned_cols=114 Identities=14% Similarity=0.168 Sum_probs=68.6
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCC-CCCCCcceeEEEcCCCCCC---CCCCce
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHM-APDMHKATNFFCVPLQDFT---PETGRY 231 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~---~~~~~f 231 (277)
+.-.+.|||||.|.+...|+..++. -+.|.+|--..-++.++++...+.. ......++.....+...+. +..+..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 4467999999999999999877776 7899999888888888876543211 1111344555544433332 122222
Q ss_pred eEEecchhhhcCChh------hHHHHHHHHHhcCCCCcEEEEEec
Q 023787 232 DVIWVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~------d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+-.+..+.--|+... --..++.+..-+|++||.++....
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 222221111121100 023577888889999999987643
No 262
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.99 E-value=0.0019 Score=55.05 Aligned_cols=99 Identities=12% Similarity=0.064 Sum_probs=66.2
Q ss_pred ccchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcc
Q 023787 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (277)
Q Consensus 135 ~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~ 213 (277)
+.....++..++.. ...+.+|+|||||.=-++..+...... .++++|++..+++.....+... ...
T Consensus 89 l~~Ld~fY~~if~~------~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l-------~~~ 155 (251)
T PF07091_consen 89 LPNLDEFYDEIFGR------IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL-------GVP 155 (251)
T ss_dssp GGGHHHHHHHHCCC------S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT-------T-C
T ss_pred hhhHHHHHHHHHhc------CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh-------CCC
Confidence 44455555555431 345789999999999998877744332 8999999999999998876553 245
Q ss_pred eeEEEcCCCCCCCCCCceeEEecchhhhcCChhh
Q 023787 214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDD 247 (277)
Q Consensus 214 ~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d 247 (277)
.++...|+..-+.+ ...|+....-+++.+....
T Consensus 156 ~~~~v~Dl~~~~~~-~~~DlaLllK~lp~le~q~ 188 (251)
T PF07091_consen 156 HDARVRDLLSDPPK-EPADLALLLKTLPCLERQR 188 (251)
T ss_dssp EEEEEE-TTTSHTT-SEESEEEEET-HHHHHHHS
T ss_pred cceeEeeeeccCCC-CCcchhhHHHHHHHHHHHh
Confidence 66777777765443 5899999888877765333
No 263
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.95 E-value=0.0063 Score=49.47 Aligned_cols=100 Identities=21% Similarity=0.133 Sum_probs=61.5
Q ss_pred CCCCccEEEeeccccHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEc-CCCCCC------
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFT------ 225 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~------ 225 (277)
..++.+|||+||..|.++.-..++- +. .|.|||+-. +.. ...++++++ |+++..
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~p--------~~Ga~~i~~~dvtdp~~~~ki~ 129 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IEP--------PEGATIIQGNDVTDPETYRKIF 129 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------ccC--------CCCcccccccccCCHHHHHHHH
Confidence 4578999999999999999555443 33 799999732 111 233455555 665431
Q ss_pred --CCCCceeEEecchhhhcC--Chhh-------HHHHHHHHHhcCCCCcEEEEEecC
Q 023787 226 --PETGRYDVIWVQWCIGHL--TDDD-------FVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 226 --~~~~~fD~Vi~~~~l~~~--~~~d-------~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
.++...|+|++-..-... ..-| ...++.-....++|+|.+++.-..
T Consensus 130 e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~ 186 (232)
T KOG4589|consen 130 EALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWD 186 (232)
T ss_pred HhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEec
Confidence 345789999975432111 1112 223444455677999999987443
No 264
>PHA01634 hypothetical protein
Probab=96.91 E-value=0.0031 Score=47.93 Aligned_cols=47 Identities=17% Similarity=-0.014 Sum_probs=43.5
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCC
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE 203 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~ 203 (277)
.+.+|+|||++.|..+.+++-+++..|+++++++...+..+++++.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence 56799999999999999999999999999999999999999988764
No 265
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=96.86 E-value=0.031 Score=51.61 Aligned_cols=118 Identities=17% Similarity=0.140 Sum_probs=73.3
Q ss_pred CCCccEEEeeccccHHHHHHHH--hC-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 156 NQHLVALDCGSGIGRITKNLLI--RY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~--~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..+..+.|+|.|.|.-...+.. +. ...++.||.|..|+.............+.....+..|...-+.- .....||
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi--~~~~~yD 276 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPI--DIKNGYD 276 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCC--Cccccee
Confidence 3456888999887754442222 22 33799999999999999888776222111111121222111111 1235699
Q ss_pred EEecchhhhcCChhh--HHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 023787 233 VIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLKENIARSD 275 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d--~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (277)
+|++++.+++++... ....-.-+.+..++||.+++.|.-.+-+
T Consensus 277 lvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~g 321 (491)
T KOG2539|consen 277 LVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTMG 321 (491)
T ss_pred eEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCccc
Confidence 999999999987332 2223444566789999999999865544
No 266
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.85 E-value=0.0039 Score=56.85 Aligned_cols=45 Identities=20% Similarity=0.317 Sum_probs=36.6
Q ss_pred CCCCCceeEEecchhhhcCCh------------------------------------hhHHHHHHHHHhcCCCCcEEEEE
Q 023787 225 TPETGRYDVIWVQWCIGHLTD------------------------------------DDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 225 ~~~~~~fD~Vi~~~~l~~~~~------------------------------------~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.+|.++.+++++++++|++.. .|+..+|+.=++-|.|||+++++
T Consensus 157 LfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~ 236 (386)
T PLN02668 157 LFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLV 236 (386)
T ss_pred ccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEE
Confidence 477899999999999999862 13566777778889999999997
Q ss_pred e
Q 023787 269 E 269 (277)
Q Consensus 269 e 269 (277)
=
T Consensus 237 ~ 237 (386)
T PLN02668 237 C 237 (386)
T ss_pred E
Confidence 3
No 267
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.73 E-value=0.008 Score=54.10 Aligned_cols=108 Identities=19% Similarity=0.138 Sum_probs=60.0
Q ss_pred CCCCccEEEeeccccHHHHHHHHh-----------CC---C---cEEEEeCCHH-HHHHHHH------HhCCCCCCCCCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIR-----------YF---N---EVDLLEPVSH-FLDAARE------SLAPENHMAPDM 210 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-----------~~---~---~v~gvD~S~~-~l~~a~~------~~~~~~~~~~~~ 210 (277)
.....+|+|+||..|..+..+... .. . +|..-|.-.. +-...+. .....+
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~------ 87 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFR------ 87 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTT------
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCc------
Confidence 456789999999999998877653 11 0 5666664322 1111111 000000
Q ss_pred CcceeEEEcCCCCCCCCCCceeEEecchhhhcCCh-------------------------------------hhHHHHHH
Q 023787 211 HKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD-------------------------------------DDFVSFFK 253 (277)
Q Consensus 211 ~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~-------------------------------------~d~~~~l~ 253 (277)
..-+.-+.+.+-+=.+|+++.|+++++.++|++.. .|+..+|+
T Consensus 88 ~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~ 167 (334)
T PF03492_consen 88 NYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLK 167 (334)
T ss_dssp SEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 01122233455444577899999999999998741 24667777
Q ss_pred HHHhcCCCCcEEEEE
Q 023787 254 RAKVGLKPGGFFVLK 268 (277)
Q Consensus 254 ~~~r~LkpGG~lii~ 268 (277)
.=++-|+|||++++.
T Consensus 168 ~Ra~ELv~GG~mvl~ 182 (334)
T PF03492_consen 168 ARAEELVPGGRMVLT 182 (334)
T ss_dssp HHHHHEEEEEEEEEE
T ss_pred HhhheeccCcEEEEE
Confidence 778889999999987
No 268
>PRK10742 putative methyltransferase; Provisional
Probab=96.66 E-value=0.0036 Score=53.47 Aligned_cols=108 Identities=19% Similarity=0.146 Sum_probs=72.1
Q ss_pred cEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCC-C--CCcceeEEEcCCCCCCC-CCCceeEEe
Q 023787 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAP-D--MHKATNFFCVPLQDFTP-ETGRYDVIW 235 (277)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~-~--~~~~~~~~~~d~~~~~~-~~~~fD~Vi 235 (277)
+|||+-+|.|..+..++..++. |+++|-++.+....++.+........ . ...+++.+..|..++.. ...+||+|+
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVY 169 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY 169 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEE
Confidence 8999999999999999988886 99999999998888877765211100 0 12467888888766531 124799999
Q ss_pred cchhhhc----------------C--ChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 236 VQWCIGH----------------L--TDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 236 ~~~~l~~----------------~--~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+--.+.| + .+.+-..+|..+.++-+ -++++.++
T Consensus 170 lDPMfp~~~ksa~vkk~mr~~~~l~g~d~d~~~lL~~Al~~A~--kRVVVKrp 220 (250)
T PRK10742 170 LDPMFPHKQKSALVKKEMRVFQSLVGPDLDADGLLEPARLLAT--KRVVVKRP 220 (250)
T ss_pred ECCCCCCCccccchhhhHHHHHHhcCCCCChHHHHHHHHHhcC--ceEEEecC
Confidence 4433322 1 12234466777666655 56666554
No 269
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.62 E-value=0.0026 Score=55.17 Aligned_cols=114 Identities=14% Similarity=0.081 Sum_probs=80.4
Q ss_pred CCCCccEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCce
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY 231 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~f 231 (277)
...+.++|-||.|.|.+.+....+ ...+++.+|+....++..++.++.-.. ...++++...-+|-..+- ...++|
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~--gy~~~~v~l~iGDG~~fl~~~~~~~~ 196 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLAC--GYEGKKVKLLIGDGFLFLEDLKENPF 196 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhc--ccCCCceEEEeccHHHHHHHhccCCc
Confidence 457789999999999998877755 223899999999999998888764311 122567777777755442 335799
Q ss_pred eEEecchhhhcCChh--hHHHHHHHHHhcCCCCcEEEEEec
Q 023787 232 DVIWVQWCIGHLTDD--DFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~--d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
|+|+.-..=--.|.. -...++.-+.+.||+||+++....
T Consensus 197 dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 197 DVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred eEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 999943321111211 145788999999999999998753
No 270
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.41 E-value=0.013 Score=53.25 Aligned_cols=109 Identities=16% Similarity=0.062 Sum_probs=77.4
Q ss_pred CCCCCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC---CCC
Q 023787 154 RNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PET 228 (277)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~ 228 (277)
.++++.||||..+-.|.=|.+++.-... .|++.|.+..-+...+.++...|. .+......|...++ ++
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv------~ntiv~n~D~~ef~~~~~~- 310 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV------TNTIVSNYDGREFPEKEFP- 310 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC------CceEEEccCcccccccccC-
Confidence 4788999999999999888877765333 799999999999999988877654 33444555666554 44
Q ss_pred CceeEEe----cch--hhhc------CC-hh-------hHHHHHHHHHhcCCCCcEEEEEe
Q 023787 229 GRYDVIW----VQW--CIGH------LT-DD-------DFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 229 ~~fD~Vi----~~~--~l~~------~~-~~-------d~~~~l~~~~r~LkpGG~lii~e 269 (277)
++||-|. |+. ++.- .. .. -..++|..+..++++||+|+.+.
T Consensus 311 ~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 311 GSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred cccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 3899998 333 1110 00 00 13467888899999999999874
No 271
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=96.41 E-value=0.0017 Score=48.10 Aligned_cols=39 Identities=38% Similarity=0.705 Sum_probs=30.8
Q ss_pred ceeEEecchhhh--cC--ChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 230 RYDVIWVQWCIG--HL--TDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 230 ~fD~Vi~~~~l~--~~--~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.||+|+|..+.. |+ .|+-+..+|+++++.|+|||.|++-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 499999887644 33 3566899999999999999999883
No 272
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=96.35 E-value=0.013 Score=50.55 Aligned_cols=46 Identities=17% Similarity=0.314 Sum_probs=36.9
Q ss_pred CCccEEEeeccccHHHHHHHHhCC---------CcEEEEeCCHHHHHHHHHHhCC
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYF---------NEVDLLEPVSHFLDAARESLAP 202 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~---------~~v~gvD~S~~~l~~a~~~~~~ 202 (277)
.+.+|+|+|+|+|.++..+++... .+++.||+|+.+.+.-++++..
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 458999999999999999987522 1799999999999999998876
No 273
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=96.28 E-value=0.0019 Score=55.84 Aligned_cols=112 Identities=17% Similarity=0.160 Sum_probs=66.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHH-HhCCCCCC---CCCCCcceeEEEcCCCCCCC-CCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE-SLAPENHM---APDMHKATNFFCVPLQDFTP-ETG 229 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~-~~~~~~~~---~~~~~~~~~~~~~d~~~~~~-~~~ 229 (277)
...+++|||+|||.|.-.......+...+...|+|...++.-.- +....-.. ......-.......+.++.+ ..+
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred EecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcc
Confidence 35678999999999999887777775679999999888742110 00000000 00000111111121112221 113
Q ss_pred --ceeEEecchhhhcCChhhHHHH-HHHHHhcCCCCcEEEEE
Q 023787 230 --RYDVIWVQWCIGHLTDDDFVSF-FKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 230 --~fD~Vi~~~~l~~~~~~d~~~~-l~~~~r~LkpGG~lii~ 268 (277)
.||+|.++.++...+ ....+ ......+++++|+++++
T Consensus 194 ~~~ydlIlsSetiy~~~--~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSID--SLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred ccchhhhhhhhhhhCcc--hhhhhHhhhhhhcCCccchhhhh
Confidence 799999999887665 33344 66777788999988764
No 274
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.035 Score=43.50 Aligned_cols=95 Identities=20% Similarity=0.074 Sum_probs=62.9
Q ss_pred cchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCccee
Q 023787 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (277)
Q Consensus 136 ~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~ 215 (277)
....+.+++.+. .+. .++..+.+|+|+|.|+.....++.+...-+|+++++-.+..++-+.-..+. .....
T Consensus 55 pAtteQv~nVLS-ll~---~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~-----~k~tr 125 (199)
T KOG4058|consen 55 PATTEQVENVLS-LLR---GNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGC-----AKSTR 125 (199)
T ss_pred CccHHHHHHHHH-Hcc---CCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhc-----ccchh
Confidence 344444555443 222 456689999999999999888877755799999999999998876554444 34566
Q ss_pred EEEcCCCCCCCCCCceeEEecchh
Q 023787 216 FFCVPLQDFTPETGRYDVIWVQWC 239 (277)
Q Consensus 216 ~~~~d~~~~~~~~~~fD~Vi~~~~ 239 (277)
|..-|+-.....+-.+-+|+....
T Consensus 126 f~RkdlwK~dl~dy~~vviFgaes 149 (199)
T KOG4058|consen 126 FRRKDLWKVDLRDYRNVVIFGAES 149 (199)
T ss_pred hhhhhhhhccccccceEEEeehHH
Confidence 666666655544434444444333
No 275
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=0.052 Score=46.18 Aligned_cols=110 Identities=19% Similarity=0.288 Sum_probs=77.4
Q ss_pred CCccEEEeeccccHHHHHHHHhCCC-----cEEEEeCCHHHHHHHHHHh-CCCCCCCCCCCcceeEEEcCCCC----CCC
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFN-----EVDLLEPVSHFLDAARESL-APENHMAPDMHKATNFFCVPLQD----FTP 226 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-----~v~gvD~S~~~l~~a~~~~-~~~~~~~~~~~~~~~~~~~d~~~----~~~ 226 (277)
.+...+|+|+|+-.-+..++..... +++-+|+|...++...+.+ .... .-.+.-+++|++. ++
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~------~l~v~~l~~~~~~~La~~~- 150 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP------GLEVNALCGDYELALAELP- 150 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC------CCeEeehhhhHHHHHhccc-
Confidence 4678999999999988888765332 8999999999988654433 2211 1234445555442 22
Q ss_pred CCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE-ecCCC
Q 023787 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK-ENIAR 273 (277)
Q Consensus 227 ~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~-e~~~~ 273 (277)
..++==+++...++..+++.+...|+..+...|+||-.+++- |.+.+
T Consensus 151 ~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~ 198 (321)
T COG4301 151 RGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKP 198 (321)
T ss_pred CCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccCH
Confidence 223333455566889999999999999999999999999885 65543
No 276
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.12 E-value=0.034 Score=49.79 Aligned_cols=97 Identities=15% Similarity=0.074 Sum_probs=67.4
Q ss_pred CCCCCccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcC-CCCCCCCCCce
Q 023787 154 RNNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-LQDFTPETGRY 231 (277)
Q Consensus 154 ~~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~f 231 (277)
...++.+|+-+|+| -|..+..+++....+|+++|.|++-++.|++.-.+ .++... -.....-.+.|
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd------------~~i~~~~~~~~~~~~~~~ 230 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD------------HVINSSDSDALEAVKEIA 230 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc------------EEEEcCCchhhHHhHhhC
Confidence 35678899998887 45677778875556899999999999999887544 122211 11111111349
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
|+|+..-. . ..+....+.|++||++++.-+.
T Consensus 231 d~ii~tv~-~--------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 231 DAIIDTVG-P--------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred cEEEECCC-h--------hhHHHHHHHHhcCCEEEEECCC
Confidence 99987655 2 4566677889999999998665
No 277
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=95.94 E-value=0.05 Score=43.28 Aligned_cols=105 Identities=18% Similarity=0.164 Sum_probs=66.0
Q ss_pred CccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHH-HHHHHhCCCCCCCCCCCcceeEEEcCCC-CCCCCCCceeEEe
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLD-AARESLAPENHMAPDMHKATNFFCVPLQ-DFTPETGRYDVIW 235 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~-~a~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~Vi 235 (277)
+++++-+|+..=.+-...+..+..++.-||.++--++ ..+.++. .+...|+. ++..-.++||++.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~s-------------si~p~df~~~~~~y~~~fD~~a 68 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLS-------------SILPVDFAKNWQKYAGSFDFAA 68 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccccc-------------cccHHHHHHHHHHhhccchhhh
Confidence 4578888888776666666677778888887641111 0111110 11111111 1111136899999
Q ss_pred cchhhhcCC---------hhhHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 023787 236 VQWCIGHLT---------DDDFVSFFKRAKVGLKPGGFFVLKENIARSD 275 (277)
Q Consensus 236 ~~~~l~~~~---------~~d~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (277)
|..+++|+. +.--...+.++.++|||||.+++.=+++++.
T Consensus 69 s~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~ 117 (177)
T PF03269_consen 69 SFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDA 117 (177)
T ss_pred eechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcc
Confidence 999998862 1123467889999999999999998877654
No 278
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.86 E-value=0.026 Score=47.45 Aligned_cols=97 Identities=16% Similarity=0.142 Sum_probs=60.8
Q ss_pred HHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCC-CCCCCCCCcceeEE
Q 023787 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFF 217 (277)
Q Consensus 140 ~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~-~~~~~~~~~~~~~~ 217 (277)
..+.+++.+.-+.. ..++.++||||.|.-..-..+-.+.+. +.+|.|+++..++.|+..+..+ ++ ...++..
T Consensus 62 h~laDLL~s~~g~~-~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l-----~~~I~lr 135 (292)
T COG3129 62 HHLADLLASTSGQI-PGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGL-----ERAIRLR 135 (292)
T ss_pred HHHHHHHHhcCCCC-CcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcch-----hhheeEE
Confidence 34455554433321 246789999999876554433223222 7999999999999999998765 32 2334443
Q ss_pred EcC-----CCCCCCCCCceeEEecchhhhc
Q 023787 218 CVP-----LQDFTPETGRYDVIWVQWCIGH 242 (277)
Q Consensus 218 ~~d-----~~~~~~~~~~fD~Vi~~~~l~~ 242 (277)
.-. +....-..+.||++.|+..||.
T Consensus 136 ~qk~~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 136 RQKDSDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred eccCccccccccccccceeeeEecCCCcch
Confidence 321 1122222578999999999985
No 279
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.77 E-value=0.028 Score=52.60 Aligned_cols=105 Identities=14% Similarity=0.187 Sum_probs=74.6
Q ss_pred CCccEEEeeccccHHHHHHHHh---CCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCce
Q 023787 157 QHLVALDCGSGIGRITKNLLIR---YFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~---~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 231 (277)
...+|+-+|+|-|-+....++. ... ++++|+-+|.++-..+.+--. .. ..+++.+..|+..+..+..+.
T Consensus 367 ~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~-~W-----~~~Vtii~~DMR~w~ap~eq~ 440 (649)
T KOG0822|consen 367 TTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFE-CW-----DNRVTIISSDMRKWNAPREQA 440 (649)
T ss_pred ceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchh-hh-----cCeeEEEeccccccCCchhhc
Confidence 3678999999999876655543 222 799999999988877653211 11 467999999999998665789
Q ss_pred eEEecchhhhcCChhh-HHHHHHHHHhcCCCCcEEEEE
Q 023787 232 DVIWVQWCIGHLTDDD-FVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d-~~~~l~~~~r~LkpGG~lii~ 268 (277)
|++++-. |.-+.+.+ -.+.|.-+.+.|||+|+.+=.
T Consensus 441 DI~VSEL-LGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 441 DIIVSEL-LGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred cchHHHh-hccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 9988643 23333223 246788899999999987643
No 280
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.61 E-value=0.056 Score=48.54 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=73.3
Q ss_pred CccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCC--C-ceeEE
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET--G-RYDVI 234 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~-~fD~V 234 (277)
..+++|+=||.|.+...+...++.-+.++|+++..++.-+.++.. ..+...|+..+.... . .+|++
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-----------~~~~~~di~~~~~~~~~~~~~Dvl 71 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-----------GDIILGDIKELDGEALRKSDVDVL 71 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC-----------CceeechHhhcChhhccccCCCEE
Confidence 468999999999999999888988899999999999999888763 334555655443221 1 78999
Q ss_pred ecchhhhcCChh-----------hHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 235 WVQWCIGHLTDD-----------DFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 235 i~~~~l~~~~~~-----------d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
+.......++.. .+---+.++...++| .+++.||++.
T Consensus 72 igGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~g 119 (328)
T COG0270 72 IGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKG 119 (328)
T ss_pred EeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCch
Confidence 966544433211 122345566677788 8888899863
No 281
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=95.60 E-value=0.022 Score=52.04 Aligned_cols=103 Identities=14% Similarity=0.133 Sum_probs=72.6
Q ss_pred CCccEEEeeccccHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeE
Q 023787 157 QHLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~--~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~ 233 (277)
.+.+|||.=+|+|.=+..++.. +..+|+.-|+|+..++..++++..+++.. ..+...+.|+..+- .....||+
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~----~~~~v~~~DAn~ll~~~~~~fD~ 124 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED----ERIEVSNMDANVLLYSRQERFDV 124 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG----CCEEEEES-HHHHHCHSTT-EEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC----ceEEEehhhHHHHhhhccccCCE
Confidence 4579999999999988888777 34589999999999999999988776621 14677777766543 13468999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
|=.-. +. ....++..+.+.++.||.|.++-
T Consensus 125 IDlDP----fG--Sp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 125 IDLDP----FG--SPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp EEE------SS----HHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCC----CC--CccHhHHHHHHHhhcCCEEEEec
Confidence 84321 12 34479999999999999999973
No 282
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.50 E-value=0.15 Score=48.51 Aligned_cols=99 Identities=13% Similarity=0.105 Sum_probs=64.4
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC----------
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD---------- 223 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~---------- 223 (277)
..++.+|+-+|||. |..+...++.....|+++|.++.-++.+++. .. ++...+..+
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl-GA------------~~v~i~~~e~~~~~~gya~ 228 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM-GA------------EFLELDFEEEGGSGDGYAK 228 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CC------------eEEEeccccccccccchhh
Confidence 45789999999995 6666666666555799999999999998873 21 111111100
Q ss_pred -CC----------CC--CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 224 -FT----------PE--TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 224 -~~----------~~--~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.. +. -..+|+|+..-....-+ ....+.+++.+.+||||+++..
T Consensus 229 ~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~--aP~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 229 VMSEEFIKAEMALFAEQAKEVDIIITTALIPGKP--APKLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred hcchhHHHHHHHHHHhccCCCCEEEECCCCCccc--CcchHHHHHHHhcCCCCEEEEE
Confidence 00 01 13689999766543221 1123359999999999998876
No 283
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=95.50 E-value=0.19 Score=42.81 Aligned_cols=102 Identities=18% Similarity=0.136 Sum_probs=60.4
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC--CCceeEE
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDVI 234 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~fD~V 234 (277)
.+.+||=+|=..-......+...+.+|+.+|+.+.+++..++.....++ .++.+..|+.+--++ .++||++
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl-------~i~~~~~DlR~~LP~~~~~~fD~f 116 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL-------PIEAVHYDLRDPLPEELRGKFDVF 116 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---------EEEE---TTS---TTTSS-BSEE
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC-------ceEEEEecccccCCHHHhcCCCEE
Confidence 5689999996654433323334556999999999999999888776544 388888888764322 3799999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCc-EEEEE
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGG-FFVLK 268 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG-~lii~ 268 (277)
++...-- .+-+.-|+.+....||.-| ..+++
T Consensus 117 ~TDPPyT---~~G~~LFlsRgi~~Lk~~g~~gy~~ 148 (243)
T PF01861_consen 117 FTDPPYT---PEGLKLFLSRGIEALKGEGCAGYFG 148 (243)
T ss_dssp EE---SS---HHHHHHHHHHHHHTB-STT-EEEEE
T ss_pred EeCCCCC---HHHHHHHHHHHHHHhCCCCceEEEE
Confidence 9876521 2357789999999998766 55554
No 284
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.46 E-value=0.027 Score=41.59 Aligned_cols=46 Identities=20% Similarity=0.172 Sum_probs=32.5
Q ss_pred HHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeC
Q 023787 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188 (277)
Q Consensus 139 ~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~ 188 (277)
..++..+...... ..+.....|||||+|.+.-.|...++. =.|+|.
T Consensus 43 AAyLi~LW~~~~~---~~~~~~FVDlGCGNGLLV~IL~~EGy~-G~GiD~ 88 (112)
T PF07757_consen 43 AAYLIELWRDMYG---EQKFQGFVDLGCGNGLLVYILNSEGYP-GWGIDA 88 (112)
T ss_pred HHHHHHHHhcccC---CCCCCceEEccCCchHHHHHHHhCCCC-cccccc
Confidence 3444444443333 345668999999999999988877876 778885
No 285
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.45 E-value=0.086 Score=46.23 Aligned_cols=74 Identities=14% Similarity=0.152 Sum_probs=58.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----CC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~ 227 (277)
+.++...+|.--|.|..+..+++.++. +++++|-.+.+++.|++++... ..++.+++.++.++. ..
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~-------~~r~~~v~~~F~~l~~~l~~~~ 93 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF-------DGRVTLVHGNFANLAEALKELG 93 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc-------CCcEEEEeCcHHHHHHHHHhcC
Confidence 567789999999999999999999864 7999999999999999998663 346777777665543 12
Q ss_pred CCceeEEe
Q 023787 228 TGRYDVIW 235 (277)
Q Consensus 228 ~~~fD~Vi 235 (277)
.+++|-|+
T Consensus 94 i~~vDGiL 101 (314)
T COG0275 94 IGKVDGIL 101 (314)
T ss_pred CCceeEEE
Confidence 34677766
No 286
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=95.41 E-value=0.085 Score=46.52 Aligned_cols=116 Identities=14% Similarity=0.213 Sum_probs=78.4
Q ss_pred CCccEEEeeccccHHHHHHHHhC-------C--------------CcEEEEeCCH--HHHHHHHHHhCCCC---------
Q 023787 157 QHLVALDCGSGIGRITKNLLIRY-------F--------------NEVDLLEPVS--HFLDAARESLAPEN--------- 204 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~-------~--------------~~v~gvD~S~--~~l~~a~~~~~~~~--------- 204 (277)
+..+||-||.|.|.-...++... . -.++.||+.+ ..++.....+....
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 34799999999998766666543 0 1689999874 35555555554430
Q ss_pred -C-CCCCCCcceeEEEcCCCCCCCCC-------CceeEEecchhhhcC---ChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 205 -H-MAPDMHKATNFFCVPLQDFTPET-------GRYDVIWVQWCIGHL---TDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 205 -~-~~~~~~~~~~~~~~d~~~~~~~~-------~~fD~Vi~~~~l~~~---~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
. ......-++.|.+.|+..+..++ ...|+|...+++..+ ....-.++|.++-..++||-.++|+|.-+
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpG 245 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPG 245 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCC
Confidence 0 11112347889999987765321 257888887776643 12356689999999999999999998654
No 287
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.29 E-value=0.075 Score=48.68 Aligned_cols=105 Identities=18% Similarity=0.140 Sum_probs=67.1
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcC-C----CCCCCC
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-L----QDFTPE 227 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d-~----~~~~~~ 227 (277)
..++.+||.+|||. |..+..+++.... +++++|.++..++.+++.... ..+.+...+ + .++ ..
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~---------~vi~~~~~~~~~~~l~~~-~~ 251 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA---------ETINFEEVDDVVEALREL-TG 251 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc---------EEEcCCcchHHHHHHHHH-cC
Confidence 45678999999998 8888888877654 599999999999999875321 111111111 0 111 11
Q ss_pred CCceeEEecchhh-------hc----C--ChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 228 TGRYDVIWVQWCI-------GH----L--TDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 228 ~~~fD~Vi~~~~l-------~~----~--~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
...+|+|+-+-.- ++ . +..+....+.++.+.|+|+|.+++..
T Consensus 252 ~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 252 GRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 2368988764211 11 1 01122467889999999999999874
No 288
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.28 E-value=0.11 Score=46.07 Aligned_cols=99 Identities=19% Similarity=0.125 Sum_probs=65.1
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEc-C-CCCC------
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-P-LQDF------ 224 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-d-~~~~------ 224 (277)
.+.+.+||-+|+| .|..+...++. +..+|+.+|+++.-++.|++ +.... +..... + ..++
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~---------~~~~~~~~~~~~~~~~v~~ 236 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATV---------TDPSSHKSSPQELAELVEK 236 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeE---------EeeccccccHHHHHHHHHh
Confidence 5678999999999 46666655554 45599999999999999999 44311 111111 0 1110
Q ss_pred CCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 225 TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 225 ~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
......+|+.+.+..++ ..++.....+|+||.+++.+.-
T Consensus 237 ~~g~~~~d~~~dCsG~~--------~~~~aai~a~r~gGt~vlvg~g 275 (354)
T KOG0024|consen 237 ALGKKQPDVTFDCSGAE--------VTIRAAIKATRSGGTVVLVGMG 275 (354)
T ss_pred hccccCCCeEEEccCch--------HHHHHHHHHhccCCEEEEeccC
Confidence 12224588887655432 5666677889999998888653
No 289
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=95.23 E-value=0.22 Score=47.21 Aligned_cols=108 Identities=15% Similarity=0.089 Sum_probs=69.2
Q ss_pred CCCccEEEeeccccHHHHHHHHhC---C--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCC-CCCCC---
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY---F--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFTP--- 226 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~---~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~--- 226 (277)
.+..+|.|-.||+|.+.....+.. . ..++|.|+++.....|+.++--.+... .+.....|- .+...
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~-----~~~i~~~dtl~~~~~~~~ 259 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG-----DANIRHGDTLSNPKHDDK 259 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc-----cccccccccccCCccccc
Confidence 455699999999998766544332 1 359999999999999999876544321 122222222 11111
Q ss_pred -CCCceeEEecchhhh-------------------c--C-C-hhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 227 -ETGRYDVIWVQWCIG-------------------H--L-T-DDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 227 -~~~~fD~Vi~~~~l~-------------------~--~-~-~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
..+.||+|+++..+. + + + ...-..+++.+...|+|||+..|.
T Consensus 260 ~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 260 DDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred CCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 336799998775543 0 0 0 111267999999999999866654
No 290
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.20 E-value=0.04 Score=48.81 Aligned_cols=75 Identities=19% Similarity=0.183 Sum_probs=54.6
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----C-C
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P-E 227 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-~ 227 (277)
+.++...+|.--|.|..+..+++.... +++|+|-.+.+++.|++++... ..++.++..++.++. . .
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-------~~r~~~~~~~F~~l~~~l~~~~~ 90 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-------DDRFIFIHGNFSNLDEYLKELNG 90 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-------CTTEEEEES-GGGHHHHHHHTTT
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-------cceEEEEeccHHHHHHHHHHccC
Confidence 457789999999999999999987554 8999999999999999988753 357888888877653 2 3
Q ss_pred CCceeEEec
Q 023787 228 TGRYDVIWV 236 (277)
Q Consensus 228 ~~~fD~Vi~ 236 (277)
..++|.|+.
T Consensus 91 ~~~~dgiL~ 99 (310)
T PF01795_consen 91 INKVDGILF 99 (310)
T ss_dssp TS-EEEEEE
T ss_pred CCccCEEEE
Confidence 357888873
No 291
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=95.17 E-value=0.047 Score=49.00 Aligned_cols=50 Identities=18% Similarity=0.319 Sum_probs=41.3
Q ss_pred CCCCCccEEEeeccccHHHHHHHHhC---------CCcEEEEeCCHHHHHHHHHHhCCC
Q 023787 154 RNNQHLVALDCGSGIGRITKNLLIRY---------FNEVDLLEPVSHFLDAARESLAPE 203 (277)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~s~~l~~~~---------~~~v~gvD~S~~~l~~a~~~~~~~ 203 (277)
..+.+..++|+|.|+|.++..+++.. ..++..|++|+...+.=+++++..
T Consensus 74 g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 74 GRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred cCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 34567889999999999999888752 228999999999999888888763
No 292
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.98 E-value=0.14 Score=46.07 Aligned_cols=97 Identities=22% Similarity=0.130 Sum_probs=59.3
Q ss_pred CCCccEEEeecc-ccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 156 NQHLVALDCGSG-IGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 156 ~~~~~VLDiGcG-tG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
.++.+||-.||| .|..+..+++.. ..+|+++|.++.-++.+++.-.. .-++....++.+.....+.+|+
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~---------~vi~~~~~~~~~~~~~~g~~D~ 238 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD---------KLVNPQNDDLDHYKAEKGYFDV 238 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc---------EEecCCcccHHHHhccCCCCCE
Confidence 356789988886 455666666554 33699999999999988764221 1111111122221111235898
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
|+-.-.- ...+..+.+.|++||++++..
T Consensus 239 vid~~G~--------~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 239 SFEVSGH--------PSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred EEECCCC--------HHHHHHHHHHhhcCCEEEEEc
Confidence 8754321 146677888999999999864
No 293
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=94.97 E-value=0.16 Score=43.07 Aligned_cols=103 Identities=17% Similarity=0.009 Sum_probs=63.5
Q ss_pred cCCCCCccEEEeeccccHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC---CC
Q 023787 153 ARNNQHLVALDCGSGIGRITKNLLIR-YFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PE 227 (277)
Q Consensus 153 ~~~~~~~~VLDiGcGtG~~s~~l~~~-~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~ 227 (277)
....++.+||=+|++.|....++..- ++. -|++|+.|+..=...-..... ..|+--+.-|+..-. ..
T Consensus 152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk--------RtNiiPIiEDArhP~KYRml 223 (317)
T KOG1596|consen 152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK--------RTNIIPIIEDARHPAKYRML 223 (317)
T ss_pred eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc--------cCCceeeeccCCCchheeee
Confidence 34678999999999999988777644 233 699999987543333222222 234444445554311 11
Q ss_pred CCceeEEecchhhhcCChhh-HHHHHHHHHhcCCCCcEEEEE
Q 023787 228 TGRYDVIWVQWCIGHLTDDD-FVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~~~d-~~~~l~~~~r~LkpGG~lii~ 268 (277)
-+-.|+|++--. .+| ...+.-++.-.||+||.++++
T Consensus 224 VgmVDvIFaDva-----qpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 224 VGMVDVIFADVA-----QPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred eeeEEEEeccCC-----CchhhhhhhhhhhhhhccCCeEEEE
Confidence 235666665332 223 334556788899999999987
No 294
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=94.96 E-value=0.023 Score=48.24 Aligned_cols=83 Identities=13% Similarity=0.163 Sum_probs=46.3
Q ss_pred ccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHH---HhCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeEE
Q 023787 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE---SLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (277)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~V 234 (277)
.+|||.-+|-|..+..++..+. +|+++|-||.+-...+. +.............+++.+.+|..++- .++.+||+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 4899999999999997776666 59999999987555443 222111100011257899999988753 446799999
Q ss_pred ecchhhhc
Q 023787 235 WVQWCIGH 242 (277)
Q Consensus 235 i~~~~l~~ 242 (277)
++-..|.+
T Consensus 156 Y~DPMFp~ 163 (234)
T PF04445_consen 156 YFDPMFPE 163 (234)
T ss_dssp EE--S---
T ss_pred EECCCCCC
Confidence 96555443
No 295
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.69 E-value=0.092 Score=46.88 Aligned_cols=98 Identities=18% Similarity=0.163 Sum_probs=62.9
Q ss_pred EEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC-CCceeEEecchh
Q 023787 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWVQWC 239 (277)
Q Consensus 161 VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~Vi~~~~ 239 (277)
|+|+-||.|.++.-+...++.-+.++|+++...+.-+.++.. .+...|+.++... -..+|+++....
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~------------~~~~~Di~~~~~~~~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN------------KVPFGDITKISPSDIPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC------------CCCccChhhhhhhhCCCcCEEEecCC
Confidence 589999999999998888887778899999999998888753 1233555554321 125788885433
Q ss_pred hhcCC--------hhhHHHHHHH---HHhcCCCCcEEEEEecCC
Q 023787 240 IGHLT--------DDDFVSFFKR---AKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 240 l~~~~--------~~d~~~~l~~---~~r~LkpGG~lii~e~~~ 272 (277)
...++ ++....++.+ +.+.++| .+++.||++
T Consensus 69 Cq~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P--~~~v~ENV~ 110 (315)
T TIGR00675 69 CQPFSIAGKRKGFEDTRGTLFFEIVRILKEKKP--KFFLLENVK 110 (315)
T ss_pred CcccchhcccCCCCCchhhHHHHHHHHHhhcCC--CEEEeeccH
Confidence 22221 0112223333 3344576 478889985
No 296
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=94.60 E-value=0.092 Score=43.70 Aligned_cols=105 Identities=8% Similarity=0.000 Sum_probs=54.7
Q ss_pred CCccEEEeeccccHHHHHHHHh---C-C-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC------
Q 023787 157 QHLVALDCGSGIGRITKNLLIR---Y-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------ 225 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~---~-~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------ 225 (277)
++..|+|+|.-.|..+..++.. . . .+|+|+|+.....+. +..+..++ ..+++++++|..+..
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~-----~~rI~~i~Gds~d~~~~~~v~ 104 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPM-----SPRITFIQGDSIDPEIVDQVR 104 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG---------TTEEEEES-SSSTHHHHTSG
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccc-----cCceEEEECCCCCHHHHHHHH
Confidence 5679999999999988866542 2 2 389999995332221 12221111 367999999877542
Q ss_pred -C-CCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 226 -P-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 226 -~-~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
. ......+|+ -.+-|.- +.....|+....+++||+++++-|..
T Consensus 105 ~~~~~~~~vlVi-lDs~H~~--~hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 105 ELASPPHPVLVI-LDSSHTH--EHVLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp SS----SSEEEE-ESS------SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred HhhccCCceEEE-ECCCccH--HHHHHHHHHhCccCCCCCEEEEEecc
Confidence 0 112333444 2232222 25567788899999999999987653
No 297
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=94.48 E-value=0.062 Score=47.67 Aligned_cols=98 Identities=20% Similarity=0.200 Sum_probs=64.6
Q ss_pred cEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC---CCCCceeEEec
Q 023787 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDVIWV 236 (277)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~Vi~ 236 (277)
+++|+=||.|.++..+...++.-+.++|+++...+.-+.++. .....|+.++. ++. .+|+++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------------~~~~~Di~~~~~~~l~~-~~D~l~g 67 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------------EVICGDITEIDPSDLPK-DVDLLIG 67 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------------EEEESHGGGCHHHHHHH-T-SEEEE
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------------ccccccccccccccccc-cceEEEe
Confidence 689999999999999988888889999999999999988873 44667777664 332 5999985
Q ss_pred chhhhcC---------Chh--hHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 237 QWCIGHL---------TDD--DFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 237 ~~~l~~~---------~~~--d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
.....-+ .++ .+-.-+-++.+.++| .+++.||+..
T Consensus 68 gpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~P--k~~~~ENV~~ 113 (335)
T PF00145_consen 68 GPPCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKP--KYFLLENVPG 113 (335)
T ss_dssp E---TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS---SEEEEEEEGG
T ss_pred ccCCceEeccccccccccccchhhHHHHHHHhhccc--eEEEecccce
Confidence 5433222 111 122233444555688 4566698753
No 298
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=94.45 E-value=0.52 Score=40.89 Aligned_cols=107 Identities=12% Similarity=0.014 Sum_probs=68.8
Q ss_pred CccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC-C-------CCCCC
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-------TPETG 229 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-------~~~~~ 229 (277)
...|+.+|||-=.-...+.......+.=+|. |++++.-++.+...+. ....+..++..|+.+ + .+...
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~---~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~ 157 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGA---EPPAHRRAVPVDLRQDWPAALAAAGFDPT 157 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCC---CCCCceEEeccCchhhHHHHHHhCCCCCC
Confidence 3469999999755444332111113444554 4455655555654221 113456777778752 1 12223
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.--++++-.++.|++.++...+|+.+.+...||+.+++.
T Consensus 158 ~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d 196 (260)
T TIGR00027 158 APTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFD 196 (260)
T ss_pred CCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 455788889999999999999999999998899988874
No 299
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.25 E-value=0.47 Score=43.00 Aligned_cols=98 Identities=16% Similarity=0.078 Sum_probs=63.8
Q ss_pred CCccEEEeeccc-cHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEc-CCC-C-CCCCC-Cc
Q 023787 157 QHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQ-D-FTPET-GR 230 (277)
Q Consensus 157 ~~~~VLDiGcGt-G~~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-d~~-~-~~~~~-~~ 230 (277)
++.+|+=+|||+ |.++..+++. +..+|+++|.++.=++.|++....... ..... +.. . ..... ..
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~---------~~~~~~~~~~~~~~~t~g~g 238 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVV---------VNPSEDDAGAEILELTGGRG 238 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEe---------ecCccccHHHHHHHHhCCCC
Confidence 334899999994 7776666655 345899999999999999986544211 00000 000 0 01111 26
Q ss_pred eeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 231 fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+|+++-+-. . . .++..+.++++|||.+.+.-..
T Consensus 239 ~D~vie~~G---~---~--~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 239 ADVVIEAVG---S---P--PALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CCEEEECCC---C---H--HHHHHHHHHhcCCCEEEEEecc
Confidence 999984443 1 1 4888999999999999987443
No 300
>PRK11524 putative methyltransferase; Provisional
Probab=94.24 E-value=0.18 Score=44.29 Aligned_cols=59 Identities=17% Similarity=0.052 Sum_probs=46.2
Q ss_pred hHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCC
Q 023787 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (277)
Q Consensus 138 ~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~ 202 (277)
+...+..++... ..++..|||.=||+|..+.. +.+...+.+|+|++++.++.|++++..
T Consensus 194 P~~L~erlI~~~-----S~~GD~VLDPF~GSGTT~~A-A~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 194 PEALLKRIILAS-----SNPGDIVLDPFAGSFTTGAV-AKASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred hHHHHHHHHHHh-----CCCCCEEEECCCCCcHHHHH-HHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 345556655432 45889999999999999884 445566799999999999999999754
No 301
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=94.05 E-value=0.26 Score=41.16 Aligned_cols=115 Identities=14% Similarity=0.078 Sum_probs=64.4
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHhCCCC---------------------------
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPEN--------------------------- 204 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~---~v~gvD~S~~~l~~a~~~~~~~~--------------------------- 204 (277)
...+-++.|-.||.|.+.--+.--+.. .|.+.|+++.+++.|++|+.-..
T Consensus 49 ~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl 128 (246)
T PF11599_consen 49 GKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEAL 128 (246)
T ss_dssp S-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred CCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 356789999999999876644333222 89999999999999999873210
Q ss_pred ---------CCCCCCCcceeEEEcCCCCCC-----CCCCceeEEecchhhhcCC-------hhhHHHHHHHHHhcCCCCc
Q 023787 205 ---------HMAPDMHKATNFFCVPLQDFT-----PETGRYDVIWVQWCIGHLT-------DDDFVSFFKRAKVGLKPGG 263 (277)
Q Consensus 205 ---------~~~~~~~~~~~~~~~d~~~~~-----~~~~~fD~Vi~~~~l~~~~-------~~d~~~~l~~~~r~LkpGG 263 (277)
+............+.|+.+.. ......|+|+.-....+++ ..-...+|..++.+|-+++
T Consensus 129 ~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~s 208 (246)
T PF11599_consen 129 ESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERS 208 (246)
T ss_dssp HHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-
T ss_pred HHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCc
Confidence 000001123556777777632 1112469998655444432 2236789999999996666
Q ss_pred EEEEEe
Q 023787 264 FFVLKE 269 (277)
Q Consensus 264 ~lii~e 269 (277)
++.+++
T Consensus 209 VV~v~~ 214 (246)
T PF11599_consen 209 VVAVSD 214 (246)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 666654
No 302
>PRK10458 DNA cytosine methylase; Provisional
Probab=94.03 E-value=0.54 Score=44.26 Aligned_cols=46 Identities=17% Similarity=0.018 Sum_probs=39.6
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhC
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~ 201 (277)
....+++|+=||.|.++..+-..++.-|.++|+++.+.+.-+.++.
T Consensus 86 ~~~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~ 131 (467)
T PRK10458 86 HYAFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWY 131 (467)
T ss_pred CCCceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcC
Confidence 3467999999999999999887788778999999999888888763
No 303
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=93.90 E-value=0.1 Score=47.83 Aligned_cols=58 Identities=7% Similarity=0.180 Sum_probs=51.7
Q ss_pred cceeEEEcCCCCCC--CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 212 KATNFFCVPLQDFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 212 ~~~~~~~~d~~~~~--~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.+++++..++.+.. .++++||.++....+.++++++..+.++++.+.++|||++++--
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEee
Confidence 56888888888763 45689999999999999999999999999999999999999863
No 304
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=93.89 E-value=0.19 Score=41.91 Aligned_cols=57 Identities=14% Similarity=0.111 Sum_probs=39.9
Q ss_pred cchHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 023787 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (277)
Q Consensus 136 ~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~ 198 (277)
.-+...+..++... ..++..|||.=||+|..+.... ....+.+|+|+++...+.|++
T Consensus 175 ~kP~~l~~~lI~~~-----t~~gdiVlDpF~GSGTT~~aa~-~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 175 QKPVELIERLIKAS-----TNPGDIVLDPFAGSGTTAVAAE-ELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -S-HHHHHHHHHHH-----S-TT-EEEETT-TTTHHHHHHH-HTT-EEEEEESSHHHHHHHHH
T ss_pred cCCHHHHHHHHHhh-----hccceeeehhhhccChHHHHHH-HcCCeEEEEeCCHHHHHHhcC
Confidence 34455666666533 3478899999999999998554 555579999999999999874
No 305
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=93.62 E-value=0.81 Score=40.44 Aligned_cols=93 Identities=23% Similarity=0.194 Sum_probs=61.0
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC------CCC
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF------TPE 227 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~ 227 (277)
..++.+||..|+| .|..+..+++....+|++++.++...+.+++.- . +.+...-... ...
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g-~------------~~~~~~~~~~~~~~~~~~~ 229 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELG-A------------DEVLNSLDDSPKDKKAAGL 229 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhC-C------------CEEEcCCCcCHHHHHHHhc
Confidence 4466789888876 477887787765557999999999998886531 1 0111110000 112
Q ss_pred CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.+.+|+|+.+... ...+.++.+.|+++|.++..
T Consensus 230 ~~~~D~vid~~g~--------~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 230 GGGFDVIFDFVGT--------QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred CCCceEEEECCCC--------HHHHHHHHHHhhcCCEEEEE
Confidence 3579988754321 14778889999999999875
No 306
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=93.60 E-value=0.46 Score=35.92 Aligned_cols=86 Identities=21% Similarity=0.149 Sum_probs=58.5
Q ss_pred cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-----C-CCCCceeEEecchhh
Q 023787 167 GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-----T-PETGRYDVIWVQWCI 240 (277)
Q Consensus 167 GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~-~~~~~fD~Vi~~~~l 240 (277)
|.|..+..+++....+|+++|.++.-++.+++.-.. .++...-.++ . .....+|+|+-+-.-
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~------------~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~ 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGAD------------HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS 68 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTES------------EEEETTTSSHHHHHHHHTTTSSEEEEEESSSS
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhccc------------ccccccccccccccccccccccceEEEEecCc
Confidence 568888888887668899999999999999875322 1111111111 0 122479999854331
Q ss_pred hcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 241 GHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 241 ~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
. ..++.+..+|+|||++++.-...
T Consensus 69 ------~--~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 69 ------G--DTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp ------H--HHHHHHHHHEEEEEEEEEESSTS
T ss_pred ------H--HHHHHHHHHhccCCEEEEEEccC
Confidence 2 58888899999999999975543
No 307
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.33 E-value=0.28 Score=46.60 Aligned_cols=98 Identities=13% Similarity=0.138 Sum_probs=62.3
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC----------
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD---------- 223 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~---------- 223 (277)
..++.+|+-+|||. |..+..++......|+++|.++.-++.++. +.. +++..+..+
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-lGa------------~~v~v~~~e~g~~~~gYa~ 227 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-MGA------------EFLELDFKEEGGSGDGYAK 227 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCC------------eEEecccccccccccccee
Confidence 34678999999995 566666665554569999999998888876 321 111111100
Q ss_pred -------------CCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 224 -------------FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 224 -------------~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
+...-..+|+|+..-.+..-+ ...-+.+++.+.+|||++++-
T Consensus 228 ~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~--aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 228 VMSEEFIAAEMELFAAQAKEVDIIITTALIPGKP--APKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred ecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCC--CCeeehHHHHhhCCCCCEEEE
Confidence 110124699998776554433 222467888999999998763
No 308
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=93.21 E-value=0.18 Score=41.39 Aligned_cols=104 Identities=13% Similarity=0.018 Sum_probs=71.8
Q ss_pred CCccEEEeeccccHHHHHHHHh---CC--CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC------
Q 023787 157 QHLVALDCGSGIGRITKNLLIR---YF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------ 225 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~---~~--~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------ 225 (277)
.+..|+|+|.-.|..+..++.. .. .+|.++|++-..++.+... .+.+.|+.++-.+..
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----------~p~i~f~egss~dpai~eqi~ 137 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----------VPDILFIEGSSTDPAIAEQIR 137 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----------CCCeEEEeCCCCCHHHHHHHH
Confidence 5678999999999988877654 22 2799999997766655443 256889988766542
Q ss_pred -CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 226 -~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
...+.--+.+|-.+-|+.. ...+.++...++|.-|-++++-|.+.+
T Consensus 138 ~~~~~y~kIfvilDsdHs~~--hvLAel~~~~pllsaG~Y~vVeDs~v~ 184 (237)
T COG3510 138 RLKNEYPKIFVILDSDHSME--HVLAELKLLAPLLSAGDYLVVEDSNVN 184 (237)
T ss_pred HHhcCCCcEEEEecCCchHH--HHHHHHHHhhhHhhcCceEEEeccccc
Confidence 1112223344555666654 566778888899999999999876544
No 309
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=93.18 E-value=1.3 Score=37.58 Aligned_cols=98 Identities=20% Similarity=0.146 Sum_probs=60.9
Q ss_pred CCCccEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC-C-CCCCCcee
Q 023787 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-TPETGRYD 232 (277)
Q Consensus 156 ~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~fD 232 (277)
.++.+||..|+|. |..+..+++....+|++++.++...+.+++..... .++....+... . ....+.+|
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~---------~~~~~~~~~~~~~~~~~~~~~d 203 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADH---------VIDYKEEDLEEELRLTGGGGAD 203 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCce---------eccCCcCCHHHHHHHhcCCCCC
Confidence 5678999999995 77777777665568999999988888776542110 00000000000 0 01235799
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+|+.+..- . ..+..+.+.|+++|.++....
T Consensus 204 ~vi~~~~~------~--~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 204 VVIDAVGG------P--ETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred EEEECCCC------H--HHHHHHHHhcccCCEEEEEcc
Confidence 99854321 1 356667788999999987643
No 310
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=92.97 E-value=0.31 Score=43.98 Aligned_cols=100 Identities=15% Similarity=0.156 Sum_probs=72.0
Q ss_pred CccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC-CCceeEEe
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW 235 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~Vi 235 (277)
+.+|||-=+|||.=+..++..... +|+.-|+||..++..++|+..+.. .+...+..|...+-.. ...||+|=
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~------~~~~v~n~DAN~lm~~~~~~fd~ID 126 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG------EDAEVINKDANALLHELHRAFDVID 126 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc------ccceeecchHHHHHHhcCCCccEEe
Confidence 579999999999988888766554 899999999999999999887521 2333444555443222 25788773
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.- -+. ....++..+.+..+.||++.++-
T Consensus 127 iD----PFG--SPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 127 ID----PFG--SPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred cC----CCC--CCchHHHHHHHHhhcCCEEEEEe
Confidence 21 112 24478889999999999999973
No 311
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=92.94 E-value=0.64 Score=41.74 Aligned_cols=92 Identities=17% Similarity=0.064 Sum_probs=57.0
Q ss_pred CCCccEEEeecc-ccHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 156 NQHLVALDCGSG-IGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 156 ~~~~~VLDiGcG-tG~~s~~l~~~--~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
.++.+||-+||| .|..+..++++ +..+|+++|.++.-++.+++ +.. .....++. +...+|
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~------------~~~~~~~~----~~~g~d 224 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE------------TYLIDDIP----EDLAVD 224 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc------------eeehhhhh----hccCCc
Confidence 467899999987 34455556654 24479999999988888764 211 00001111 112488
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+|+-.-.- . .....+....+.|++||++++.-
T Consensus 225 ~viD~~G~-~----~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 225 HAFECVGG-R----GSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred EEEECCCC-C----ccHHHHHHHHHhCcCCcEEEEEe
Confidence 88743220 0 11257888889999999998764
No 312
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=92.66 E-value=0.3 Score=44.20 Aligned_cols=43 Identities=21% Similarity=0.334 Sum_probs=34.8
Q ss_pred CCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~ 198 (277)
.+-..++|+|.|.|.++..+.-.+.-.|.+||-|....+.|++
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 4556899999999999997765555589999999877777654
No 313
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=92.57 E-value=1.6 Score=38.96 Aligned_cols=92 Identities=14% Similarity=-0.032 Sum_probs=58.4
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..++.+||-.|+| .|..+..+++....+|++++.++.-++.+++.-... .+ +..+. ..+.+|+
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~---------vi-----~~~~~--~~~~~d~ 226 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAAS---------AG-----GAYDT--PPEPLDA 226 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCce---------ec-----ccccc--CcccceE
Confidence 4567899999975 445555566554446999999998888887743221 01 11111 1235787
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++..... + ..+....+.|++||++++.-.
T Consensus 227 ~i~~~~~---~-----~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 227 AILFAPA---G-----GLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred EEECCCc---H-----HHHHHHHHhhCCCcEEEEEec
Confidence 6543221 1 467788899999999988654
No 314
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.48 E-value=0.39 Score=40.53 Aligned_cols=93 Identities=14% Similarity=0.149 Sum_probs=64.7
Q ss_pred CccEEEeeccccHHHHHHHHhCCC----------cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFN----------EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-- 225 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~----------~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 225 (277)
-.|++|+.+..|.++..+.++.+. .+++||+-+ |. . -..+.-+++|++...
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-Ma-------P---------I~GV~qlq~DIT~~sta 104 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-MA-------P---------IEGVIQLQGDITSASTA 104 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-CC-------c---------cCceEEeecccCCHhHH
Confidence 358999999999999988776433 389999743 11 1 234666778887643
Q ss_pred ------CCCCceeEEecchh-----hhcCC----hhhHHHHHHHHHhcCCCCcEEEE
Q 023787 226 ------PETGRYDVIWVQWC-----IGHLT----DDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 226 ------~~~~~fD~Vi~~~~-----l~~~~----~~d~~~~l~~~~r~LkpGG~lii 267 (277)
|...+.|+|+|-.+ +|.++ .+-+..+|.-...+|||||.|+-
T Consensus 105 e~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 105 EAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred HHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 44468999998764 44333 12255667778899999999874
No 315
>PRK13699 putative methylase; Provisional
Probab=92.42 E-value=0.58 Score=39.73 Aligned_cols=59 Identities=20% Similarity=0.175 Sum_probs=44.6
Q ss_pred hHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCC
Q 023787 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (277)
Q Consensus 138 ~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~ 202 (277)
+...+..++... ..++..|||-=||+|..+.... +...+++|+|+++...+.+.+++..
T Consensus 149 P~~l~~~~i~~~-----s~~g~~vlDpf~Gsgtt~~aa~-~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 149 PVTSLQPLIESF-----THPNAIVLDPFAGSGSTCVAAL-QSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred cHHHHHHHHHHh-----CCCCCEEEeCCCCCCHHHHHHH-HcCCCEEEEecCHHHHHHHHHHHHH
Confidence 345555555422 3477899999999999988655 4444699999999999999988754
No 316
>PTZ00357 methyltransferase; Provisional
Probab=92.39 E-value=0.54 Score=45.85 Aligned_cols=105 Identities=16% Similarity=0.161 Sum_probs=63.4
Q ss_pred ccEEEeeccccHHHHHHHHh----CCC-cEEEEeCCHHHHHHHHHHhCCCCCC---CCCCCcceeEEEcCCCCCCCCC--
Q 023787 159 LVALDCGSGIGRITKNLLIR----YFN-EVDLLEPVSHFLDAARESLAPENHM---APDMHKATNFFCVPLQDFTPET-- 228 (277)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~----~~~-~v~gvD~S~~~l~~a~~~~~~~~~~---~~~~~~~~~~~~~d~~~~~~~~-- 228 (277)
..|+-+|+|-|-+....++. +.. +|++||-++..+.....+....... .......++++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 46999999999876655543 222 7999999966544444443211111 1112346899999999885331
Q ss_pred ---------CceeEEecchhhhcCChhh-HHHHHHHHHhcCCC----CcE
Q 023787 229 ---------GRYDVIWVQWCIGHLTDDD-FVSFFKRAKVGLKP----GGF 264 (277)
Q Consensus 229 ---------~~fD~Vi~~~~l~~~~~~d-~~~~l~~~~r~Lkp----GG~ 264 (277)
+++|+||+-. |.-|.+.+ -.+.|.-+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSEL-LGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSEL-LGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHhh-hcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 3799998733 22222222 23456666777765 776
No 317
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=92.35 E-value=0.71 Score=41.08 Aligned_cols=95 Identities=21% Similarity=0.255 Sum_probs=58.6
Q ss_pred CCccEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 157 QHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 157 ~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
++.+||-.|||. |..+..+++.... .+++++.++...+.+++. ... .-+.....++.......+.+|+|
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-g~~--------~vi~~~~~~~~~~~~~~~~vd~v 235 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-GAD--------ETVNLARDPLAAYAADKGDFDVV 235 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CCC--------EEEcCCchhhhhhhccCCCccEE
Confidence 678888888875 6677767766443 699999999888866653 211 00111101111221122459999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+.+... . ..++.+.+.|+++|+++..
T Consensus 236 ld~~g~------~--~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 236 FEASGA------P--AALASALRVVRPGGTVVQV 261 (339)
T ss_pred EECCCC------H--HHHHHHHHHHhcCCEEEEE
Confidence 865331 1 3567788999999999865
No 318
>PRK11524 putative methyltransferase; Provisional
Probab=92.24 E-value=0.095 Score=46.06 Aligned_cols=56 Identities=14% Similarity=0.089 Sum_probs=38.2
Q ss_pred ceeEEEcCCCCC--CCCCCceeEEecchhhhc------C----Chh----hHHHHHHHHHhcCCCCcEEEEE
Q 023787 213 ATNFFCVPLQDF--TPETGRYDVIWVQWCIGH------L----TDD----DFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 213 ~~~~~~~d~~~~--~~~~~~fD~Vi~~~~l~~------~----~~~----d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+..++++|..+. .+++++||+|++.-.+.- . ..+ -+..++.++.++|||||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 345677777664 255679999998644310 0 001 1357899999999999999985
No 319
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=91.67 E-value=1.1 Score=40.27 Aligned_cols=96 Identities=25% Similarity=0.177 Sum_probs=57.8
Q ss_pred CCCccEEEeecc-ccHHHHHHHHhCCCcEEEEeC---CHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCce
Q 023787 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEP---VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (277)
Q Consensus 156 ~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~---S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 231 (277)
.++.+||-+|+| .|..+..+++....+|++++. ++.-++.+++.-.. .+.....+..+.. ..+.|
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~----------~v~~~~~~~~~~~-~~~~~ 239 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGAT----------YVNSSKTPVAEVK-LVGEF 239 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE----------EecCCccchhhhh-hcCCC
Confidence 356789999987 366666676654447999986 67777777653211 0111111111101 12468
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
|+|+-.-.- . ..+....+.|++||.+++.-.
T Consensus 240 d~vid~~g~------~--~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 240 DLIIEATGV------P--PLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred CEEEECcCC------H--HHHHHHHHHccCCcEEEEEec
Confidence 988854431 1 367788899999999987643
No 320
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=90.93 E-value=1.1 Score=40.44 Aligned_cols=98 Identities=13% Similarity=0.046 Sum_probs=61.6
Q ss_pred CCCCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEc-CCCC-C-CCCCC
Q 023787 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQD-F-TPETG 229 (277)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-d~~~-~-~~~~~ 229 (277)
..++.+||=.|+ |.|..+..+++....+|++++.++.-.+.+++.+... .-++.... ++.+ . ....+
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~--------~vi~~~~~~~~~~~i~~~~~~ 227 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFD--------EAFNYKEEPDLDAALKRYFPE 227 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCC--------EEEECCCcccHHHHHHHHCCC
Confidence 456789999997 4788888888775557999999998888776444321 11111110 1110 0 01123
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.+|+|+-+-. . ..+..+.+.|++||++++.-
T Consensus 228 gvD~v~d~vG-------~--~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 228 GIDIYFDNVG-------G--DMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred CcEEEEECCC-------H--HHHHHHHHHhccCCEEEEEC
Confidence 6898874322 1 35677888999999998753
No 321
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=90.86 E-value=0.18 Score=44.14 Aligned_cols=107 Identities=22% Similarity=0.175 Sum_probs=69.5
Q ss_pred CCccEEEeeccccHHHH-HHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGIGRITK-NLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~-~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.+..|.|+=+|.|.++. .+...+...|.++|.+|..++..++++..++. ..+...+.+|-.. +.+....|-|.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V-----~~r~~i~~gd~R~-~~~~~~AdrVn 267 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNV-----MDRCRITEGDNRN-PKPRLRADRVN 267 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcch-----HHHHHhhhccccc-cCccccchhee
Confidence 34789999999999999 66777888999999999999999999877533 1222233344333 22345677776
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCC-Cc-EEEEEecCCCCC
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKP-GG-FFVLKENIARSD 275 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~Lkp-GG-~lii~e~~~~~~ 275 (277)
.... |..+ +-.-.+..+||| || ++=|.||+..++
T Consensus 268 LGLl----PSse--~~W~~A~k~Lk~eggsilHIHenV~~s~ 303 (351)
T KOG1227|consen 268 LGLL----PSSE--QGWPTAIKALKPEGGSILHIHENVKDSD 303 (351)
T ss_pred eccc----cccc--cchHHHHHHhhhcCCcEEEEeccccccc
Confidence 4432 2111 233334456666 44 666778886543
No 322
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=90.83 E-value=0.93 Score=38.98 Aligned_cols=107 Identities=15% Similarity=0.196 Sum_probs=59.1
Q ss_pred CCCccEEEeeccccHHHHHHHH---hC---CCcEEEEeCC--------------------------HHHHHHHHHHhCCC
Q 023787 156 NQHLVALDCGSGIGRITKNLLI---RY---FNEVDLLEPV--------------------------SHFLDAARESLAPE 203 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~---~~---~~~v~gvD~S--------------------------~~~l~~a~~~~~~~ 203 (277)
.-+..|+|+||-.|..+..+.. .+ ..++.+.|.= ...++..++++...
T Consensus 73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~ 152 (248)
T PF05711_consen 73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY 152 (248)
T ss_dssp TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence 4557899999999987764432 21 1267777621 12355566666554
Q ss_pred CCCCCCCCcceeEEEcCCCCCC--CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 204 NHMAPDMHKATNFFCVPLQDFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 204 ~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
++. ..++.++.+.+.+.. .+..++-++..-.-+. +-....|..++..|.|||+++|-|-
T Consensus 153 gl~----~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY----esT~~aLe~lyprl~~GGiIi~DDY 213 (248)
T PF05711_consen 153 GLL----DDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY----ESTKDALEFLYPRLSPGGIIIFDDY 213 (248)
T ss_dssp TTS----STTEEEEES-HHHHCCC-TT--EEEEEE---SH----HHHHHHHHHHGGGEEEEEEEEESST
T ss_pred CCC----cccEEEECCcchhhhccCCCccEEEEEEeccch----HHHHHHHHHHHhhcCCCeEEEEeCC
Confidence 431 357888888765432 1223444443322221 1345789999999999999999764
No 323
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=90.77 E-value=0.22 Score=46.42 Aligned_cols=103 Identities=12% Similarity=0.082 Sum_probs=73.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PET 228 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~ 228 (277)
..++.+|||.=|++|.-+...+...+. +|++-|.++..++..+++...++. ...++-...|+..+- ...
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v-----~~ive~~~~DA~~lM~~~~~~~ 181 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGV-----EDIVEPHHSDANVLMYEHPMVA 181 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCc-----hhhcccccchHHHHHHhccccc
Confidence 346789999999999999988877544 899999999999999998877533 122333344443321 123
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
..||+|-.--. . ....||..+.+.++.||.++++
T Consensus 182 ~~FDvIDLDPy----G--s~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 182 KFFDVIDLDPY----G--SPSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred cccceEecCCC----C--CccHHHHHHHHHhhcCCEEEEE
Confidence 68998853221 1 2337889999999999999997
No 324
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=90.63 E-value=0.57 Score=41.45 Aligned_cols=101 Identities=13% Similarity=0.097 Sum_probs=70.8
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
.-.+.+|.-||.| .|..+..++.-....|+.+|+|..-++.....+.. ++...-....++...-.+.|+
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~----------rv~~~~st~~~iee~v~~aDl 234 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGG----------RVHTLYSTPSNIEEAVKKADL 234 (371)
T ss_pred CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCc----------eeEEEEcCHHHHHHHhhhccE
Confidence 3456788889998 46777777755555899999998888877776643 355555544444322357899
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
||..-.+---. ...-+.+++...||||++++=
T Consensus 235 vIgaVLIpgak--aPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 235 VIGAVLIPGAK--APKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred EEEEEEecCCC--CceehhHHHHHhcCCCcEEEE
Confidence 98765554433 445688999999999998873
No 325
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=90.53 E-value=0.99 Score=36.37 Aligned_cols=100 Identities=19% Similarity=0.184 Sum_probs=58.0
Q ss_pred EeeccccHHHHHHHHhCC-C-cEEEE--eCCHHHHHHHH---HHhCCCCCCCCCCCccee-EEEcCCCCCC----CCCCc
Q 023787 163 DCGSGIGRITKNLLIRYF-N-EVDLL--EPVSHFLDAAR---ESLAPENHMAPDMHKATN-FFCVPLQDFT----PETGR 230 (277)
Q Consensus 163 DiGcGtG~~s~~l~~~~~-~-~v~gv--D~S~~~l~~a~---~~~~~~~~~~~~~~~~~~-~~~~d~~~~~----~~~~~ 230 (277)
=||=|.=.++..|++... . .+++. |......+.-. +++.... ...+. ....|++++. ...+.
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~------~~g~~V~~~VDat~l~~~~~~~~~~ 75 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELR------ELGVTVLHGVDATKLHKHFRLKNQR 75 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh------hcCCccccCCCCCcccccccccCCc
Confidence 356677777887877644 2 45444 44433333221 2222110 01122 2345666664 24579
Q ss_pred eeEEecchhhhc-----------CChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 231 YDVIWVQWCIGH-----------LTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 231 fD~Vi~~~~l~~-----------~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
||.|+.++.-.. ....=+..+|+.+..+|+++|.+.|+
T Consensus 76 FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT 124 (166)
T PF10354_consen 76 FDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT 124 (166)
T ss_pred CCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 999998876322 00122678999999999999999987
No 326
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=90.27 E-value=1.2 Score=41.41 Aligned_cols=88 Identities=14% Similarity=-0.012 Sum_probs=55.2
Q ss_pred CCCccEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 156 ~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
-++.+|+-+|||. |......++....+|+++|.++.-++.|+.. |. +. .++.+. . ..+|+|
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~----G~---------~~--~~~~e~-v--~~aDVV 261 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAME----GY---------EV--MTMEEA-V--KEGDIF 261 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhc----CC---------EE--ccHHHH-H--cCCCEE
Confidence 3678999999995 5555555544444799999998877777652 11 11 111111 1 257999
Q ss_pred ecchhhhcCChhhHHHHHHH-HHhcCCCCcEEEEEe
Q 023787 235 WVQWCIGHLTDDDFVSFFKR-AKVGLKPGGFFVLKE 269 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~-~~r~LkpGG~lii~e 269 (277)
+..-. . ..++.. ..+.+|+||+++..-
T Consensus 262 I~atG-------~-~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 262 VTTTG-------N-KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred EECCC-------C-HHHHHHHHHhcCCCCcEEEEeC
Confidence 86432 1 134544 488999999998764
No 327
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=90.22 E-value=2.9 Score=37.85 Aligned_cols=110 Identities=17% Similarity=0.057 Sum_probs=69.5
Q ss_pred CCCCCccEEEeeccccHHHHHHHHhCCC-----cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC---
Q 023787 154 RNNQHLVALDCGSGIGRITKNLLIRYFN-----EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--- 225 (277)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~s~~l~~~~~~-----~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 225 (277)
...++.+|||+.+-.|.=+..+++.... .|++=|.++.=+...+.......- .+......++..++
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~------~~~~v~~~~~~~~p~~~ 225 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS------PNLLVTNHDASLFPNIY 225 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC------cceeeecccceeccccc
Confidence 3678999999999999999888877442 588999998877776666533211 22222222332222
Q ss_pred ------CCCCceeEEecc-----h-hhhcCCh---------------hhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 226 ------PETGRYDVIWVQ-----W-CIGHLTD---------------DDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 226 ------~~~~~fD~Vi~~-----~-~l~~~~~---------------~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.....||-|.+- . ++.+.++ .-...++.+..++||+||.++-+.
T Consensus 226 ~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST 296 (375)
T KOG2198|consen 226 LKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST 296 (375)
T ss_pred cccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence 122468887732 1 1111110 012457899999999999999874
No 328
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=89.98 E-value=0.15 Score=46.60 Aligned_cols=63 Identities=11% Similarity=0.025 Sum_probs=49.9
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~ 222 (277)
.+++..|.|+-||.|-++..++.++. +|++-|.+++++++.+.+++.+... ..++..+..|..
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~----~~~iei~Nmda~ 309 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVD----PSAIEIFNMDAK 309 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccc----hhheeeecccHH
Confidence 35788999999999999999888875 6999999999999999998876542 223555555543
No 329
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=89.91 E-value=3.2 Score=35.60 Aligned_cols=93 Identities=16% Similarity=-0.005 Sum_probs=57.9
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~~-v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+||-.|||. |..+..+++....+ |++++.+++..+.+++.-... .-.... .. ......+|
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~--------~~~~~~-~~----~~~~~~~d 161 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPAD--------PVAADT-AD----EIGGRGAD 161 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCc--------cccccc-hh----hhcCCCCC
Confidence 45678888888875 66666677665555 999999999888776542010 000000 00 01224689
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|+..-.- . ..+....+.|+++|.++..
T Consensus 162 ~vl~~~~~------~--~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 162 VVIEASGS------P--SALETALRLLRDRGRVVLV 189 (277)
T ss_pred EEEEccCC------h--HHHHHHHHHhcCCcEEEEE
Confidence 88853221 1 3567778889999999865
No 330
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=89.77 E-value=0.29 Score=45.67 Aligned_cols=109 Identities=16% Similarity=0.095 Sum_probs=71.5
Q ss_pred CCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCC-------CCCCC
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ-------DFTPE 227 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~-------~~~~~ 227 (277)
.....+|-+|-|.|.+...+....+ ..+++|++.|.|++.|++++.-..- .+....-.|.. ....+
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~------~r~~V~i~dGl~~~~~~~k~~~~ 367 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS------DRNKVHIADGLDFLQRTAKSQQE 367 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh------hhhhhhHhhchHHHHHHhhcccc
Confidence 4567899999999999887765555 3899999999999999998754210 11111111211 11124
Q ss_pred CCceeEEec----chhhhcC--Chhh--HHHHHHHHHhcCCCCcEEEEEecC
Q 023787 228 TGRYDVIWV----QWCIGHL--TDDD--FVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 228 ~~~fD~Vi~----~~~l~~~--~~~d--~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
+..||+++. .. .|-+ ++.. -..++..++..|.|-|.+++--.+
T Consensus 368 ~~~~dvl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~ 418 (482)
T KOG2352|consen 368 DICPDVLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVT 418 (482)
T ss_pred ccCCcEEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEec
Confidence 568999872 23 3333 2222 346899999999999999875433
No 331
>PRK13699 putative methylase; Provisional
Probab=89.34 E-value=0.37 Score=40.94 Aligned_cols=52 Identities=15% Similarity=0.020 Sum_probs=32.1
Q ss_pred EEEcCCCCC--CCCCCceeEEecchhhh----c-----CC----hhhHHHHHHHHHhcCCCCcEEEE
Q 023787 216 FFCVPLQDF--TPETGRYDVIWVQWCIG----H-----LT----DDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 216 ~~~~d~~~~--~~~~~~fD~Vi~~~~l~----~-----~~----~~d~~~~l~~~~r~LkpGG~lii 267 (277)
++++|..+. ..+++++|+|+..-... + +. .+-...++.+++|+|||||.+++
T Consensus 4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 344554433 35567788887653221 0 00 11245789999999999999886
No 332
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=89.16 E-value=3.9 Score=36.80 Aligned_cols=98 Identities=16% Similarity=-0.019 Sum_probs=58.0
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC-C--CCCCC
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F--TPETG 229 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~-~--~~~~~ 229 (277)
..++.+||-.||| .|..+..+++.... +|+++|.++.-++.+++.-.. .-++....+..+ + .....
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~---------~~i~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGAT---------HTVNSSGTDPVEAIRALTGGF 244 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc---------eEEcCCCcCHHHHHHHHhCCC
Confidence 4567899999876 35566666665443 599999999988888653211 001111111100 0 01123
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.+|+|+-.-.- . ..+....+.+++||++++.-
T Consensus 245 g~d~vid~~g~------~--~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 245 GADVVIDAVGR------P--ETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CCCEEEECCCC------H--HHHHHHHHHhccCCEEEEEC
Confidence 58988743221 1 35667778999999999764
No 333
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=89.01 E-value=2.6 Score=37.23 Aligned_cols=86 Identities=21% Similarity=0.128 Sum_probs=54.0
Q ss_pred CCccEEEeecc-ccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 157 QHLVALDCGSG-IGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 157 ~~~~VLDiGcG-tG~~s~~l~~~~-~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
++.++|=+||| .|.++..+++.. ...|.++|.++..++.+.... . + +..+. ....+|+|
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~----~--------i-----~~~~~--~~~g~Dvv 204 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE----V--------L-----DPEKD--PRRDYRAI 204 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc----c--------c-----Chhhc--cCCCCCEE
Confidence 45678888876 566777677654 345778898887776664321 0 0 10000 12468988
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+-+-.- . ..+..+.+.|++||++++.-
T Consensus 205 id~~G~------~--~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 205 YDASGD------P--SLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred EECCCC------H--HHHHHHHHhhhcCcEEEEEe
Confidence 854331 1 46677888999999999763
No 334
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=88.86 E-value=1 Score=44.40 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=63.1
Q ss_pred CCCccEEEeeccccHHHHHHHHhC-------C-----C-cEEEEeCC---HHHHHHHHHHhC-----------C-----C
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY-------F-----N-EVDLLEPV---SHFLDAARESLA-----------P-----E 203 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-------~-----~-~v~gvD~S---~~~l~~a~~~~~-----------~-----~ 203 (277)
....+|+|+|-|+|......++.. + . +++.+|.- .+.+..+-+... . .
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 345899999999999776665432 2 1 78888853 333333322111 0 0
Q ss_pred CCCCC---CCCcceeEEEcCCCCCCC-CCCceeEEecch-hhhcCChhhHHHHHHHHHhcCCCCcEEE
Q 023787 204 NHMAP---DMHKATNFFCVPLQDFTP-ETGRYDVIWVQW-CIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (277)
Q Consensus 204 ~~~~~---~~~~~~~~~~~d~~~~~~-~~~~fD~Vi~~~-~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (277)
++... .....++...+|+.+... -...||+++.-. +-...|+-=-..+|+.++++++|||++.
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence 11000 001245566677755321 125699998543 2223231112479999999999999987
No 335
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=88.59 E-value=4.1 Score=30.02 Aligned_cols=85 Identities=15% Similarity=0.112 Sum_probs=54.3
Q ss_pred ccccHHHHHHHHh---CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCCCceeEEecch
Q 023787 166 SGIGRITKNLLIR---YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYDVIWVQW 238 (277)
Q Consensus 166 cGtG~~s~~l~~~---~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD~Vi~~~ 238 (277)
||.|..+..+++. ....|+.+|.++..++.+++.. ..++.+|..+.. ..-.+.|.|++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~-------------~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG-------------VEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-------------SEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc-------------cccccccchhhhHHhhcCccccCEEEEcc
Confidence 5666777666554 3336999999999988887642 557888887643 2224688777654
Q ss_pred hhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 239 ~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
. ++.....+....+.+.|...++..
T Consensus 71 ~-----~d~~n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 71 D-----DDEENLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp S-----SHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred C-----CHHHHHHHHHHHHHHCCCCeEEEE
Confidence 4 223334555566777788777764
No 336
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=88.47 E-value=3.5 Score=36.38 Aligned_cols=96 Identities=19% Similarity=0.108 Sum_probs=59.3
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..++.+||-+||| .|..+..+++....+|++++.++..++.+++. ... .-+.....+...- ..+.+|+
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~-g~~--------~~~~~~~~~~~~~--~~~~~d~ 228 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKL-GAD--------EVVDSGAELDEQA--AAGGADV 228 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh-CCc--------EEeccCCcchHHh--ccCCCCE
Confidence 4567789999987 77777777766555799999999988888542 211 0000000000000 1245898
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
++....- . ..+..+.+.|+++|.++...
T Consensus 229 vi~~~~~------~--~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 229 ILVTVVS------G--AAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred EEECCCc------H--HHHHHHHHhcccCCEEEEEC
Confidence 8754221 1 35677788999999998763
No 337
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=88.44 E-value=1.6 Score=35.64 Aligned_cols=93 Identities=10% Similarity=0.047 Sum_probs=55.8
Q ss_pred ccEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC---------CCC
Q 023787 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---------PET 228 (277)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------~~~ 228 (277)
..|+.+|||-=.....+...... .+.-+|. |.+++.-++.+...+.. ...+..++.+|+.+.. +..
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~---~~~~~~~v~~Dl~~~~~~~~L~~~g~~~ 155 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGAR---PPANYRYVPADLRDDSWIDALPKAGFDP 155 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHH---HHEESSEEES-TTSHHHHHHHHHCTT-T
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCccc---CCcceeEEeccccchhhHHHHHHhCCCC
Confidence 38999999987777767654322 5666665 44555555555442100 0123567888888532 234
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHH
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRA 255 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~ 255 (277)
+.--++++-.++.|++.++...+|+.+
T Consensus 156 ~~ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 156 DRPTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp TSEEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CCCeEEEEcchhhcCCHHHHHHHHHHh
Confidence 566788888999999988888888776
No 338
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=88.15 E-value=5.1 Score=35.34 Aligned_cols=95 Identities=20% Similarity=0.138 Sum_probs=58.3
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC----CCCC
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPET 228 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~-v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~ 228 (277)
..++.+||-+|+| .|..+..+++....+ +++++.++...+.+++.... .++..+-.+. ....
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~------------~~~~~~~~~~~~~~~~~~ 224 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGAT------------ETVDPSREDPEAQKEDNP 224 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCe------------EEecCCCCCHHHHHHhcC
Confidence 4567799999876 366666666665444 89999999988887543210 1111110000 0123
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
..+|+|+.+..- . ..+..+.+.|+++|+++...
T Consensus 225 ~~vd~v~~~~~~------~--~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 225 YGFDVVIEATGV------P--KTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCCcEEEECCCC------h--HHHHHHHHHHhcCCEEEEEe
Confidence 568999854220 1 46777788999999998753
No 339
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=88.00 E-value=6.5 Score=34.72 Aligned_cols=96 Identities=13% Similarity=0.058 Sum_probs=59.8
Q ss_pred CCCCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEc-CCCCC--CCCCC
Q 023787 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDF--TPETG 229 (277)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-d~~~~--~~~~~ 229 (277)
..++.+||=.|+ |.|..+..+++....+|++++.++.-.+.+++ +... .-++.... +..+. ....+
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~-lGa~--------~vi~~~~~~~~~~~~~~~~~~ 206 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK-LGFD--------VAFNYKTVKSLEETLKKASPD 206 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCCC--------EEEeccccccHHHHHHHhCCC
Confidence 456789998884 57888888887755579999999988888865 3221 11111110 11110 01124
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.+|+|+-.-. . ..+....+.|++||+++..
T Consensus 207 gvdvv~d~~G-------~--~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 207 GYDCYFDNVG-------G--EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred CeEEEEECCC-------H--HHHHHHHHHhCcCcEEEEe
Confidence 6998885322 1 2457778899999999975
No 340
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=87.93 E-value=7.5 Score=32.59 Aligned_cols=119 Identities=20% Similarity=0.224 Sum_probs=69.7
Q ss_pred cchHHHHHHHHhccCCCcCCCCCccEEEeeccccH--HHHHHHH--h-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCC
Q 023787 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGR--ITKNLLI--R-YFNEVDLLEPVSHFLDAARESLAPENHMAPDM 210 (277)
Q Consensus 136 ~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~--~s~~l~~--~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~ 210 (277)
++..+|+..+.. ...-..|++..|+.|. .+..|+. + -..++++|-+.+.-+...++.+...++
T Consensus 27 p~~aEfISAlAA-------G~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~----- 94 (218)
T PF07279_consen 27 PGVAEFISALAA-------GWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL----- 94 (218)
T ss_pred CCHHHHHHHHhc-------cccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc-----
Confidence 344566655443 3445678898766442 3343332 2 222789998888888888887776544
Q ss_pred CcceeEEEcCC-CCCCCCCCceeEEecchhhhcCChhhHH-HHHHHHHhcCCCCcEEEEEecCCC
Q 023787 211 HKATNFFCVPL-QDFTPETGRYDVIWVQWCIGHLTDDDFV-SFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 211 ~~~~~~~~~d~-~~~~~~~~~fD~Vi~~~~l~~~~~~d~~-~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
...++|+.++. +++...-...|+++.-.-. ++.. .+|+.+. +.|.|-+++..|...
T Consensus 95 ~~~vEfvvg~~~e~~~~~~~~iDF~vVDc~~-----~d~~~~vl~~~~--~~~~GaVVV~~Na~~ 152 (218)
T PF07279_consen 95 SDVVEFVVGEAPEEVMPGLKGIDFVVVDCKR-----EDFAARVLRAAK--LSPRGAVVVCYNAFS 152 (218)
T ss_pred cccceEEecCCHHHHHhhccCCCEEEEeCCc-----hhHHHHHHHHhc--cCCCceEEEEecccc
Confidence 24468887764 3322222357877643332 2444 5555433 567788888888644
No 341
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=87.86 E-value=2.9 Score=37.50 Aligned_cols=100 Identities=19% Similarity=0.133 Sum_probs=65.2
Q ss_pred CCCCccEEEee--ccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CC-CC
Q 023787 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PE-TG 229 (277)
Q Consensus 155 ~~~~~~VLDiG--cGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~-~~ 229 (277)
..++.+||=.| .|.|.++..|++.....++++--|++-.+.+++...+ ..+++...|+.+-. .. ..
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd---------~vi~y~~~~~~~~v~~~t~g~ 210 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGAD---------HVINYREEDFVEQVRELTGGK 210 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCC---------EEEcCCcccHHHHHHHHcCCC
Confidence 45688999998 4577888888887653577777787777766665443 22333333322211 11 23
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
.+|+|+..-. . ..+.+..+.|+++|.++..-...
T Consensus 211 gvDvv~D~vG-------~--~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 211 GVDVVLDTVG-------G--DTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred CceEEEECCC-------H--HHHHHHHHHhccCCEEEEEecCC
Confidence 6999986544 2 56677888999999999875543
No 342
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=87.79 E-value=2 Score=38.26 Aligned_cols=93 Identities=10% Similarity=0.016 Sum_probs=57.6
Q ss_pred ccEEEeec--cccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC-C-CCCCCceeE
Q 023787 159 LVALDCGS--GIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-TPETGRYDV 233 (277)
Q Consensus 159 ~~VLDiGc--GtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~fD~ 233 (277)
.+||=.|+ |.|..+..+++.... +|++++.+++-.+.+++.+... ..+.....++.+ + ....+.+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~--------~vi~~~~~~~~~~i~~~~~~gvd~ 227 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFD--------AAINYKTDNVAERLRELCPEGVDV 227 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCc--------EEEECCCCCHHHHHHHHCCCCceE
Confidence 78988885 678888888876554 6999999988888877654321 111111111110 0 011246999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
|+..-. . ..+..+.+.|+++|+++..
T Consensus 228 vid~~g-------~--~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 228 YFDNVG-------G--EISDTVISQMNENSHIILC 253 (345)
T ss_pred EEECCC-------c--HHHHHHHHHhccCCEEEEE
Confidence 985322 1 2346778899999999874
No 343
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=87.37 E-value=5.4 Score=36.13 Aligned_cols=99 Identities=16% Similarity=-0.045 Sum_probs=58.0
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC-CC-CCCCc
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT-PETGR 230 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~-~~~~~ 230 (277)
..++.+||=.|+| .|..+..+++.... .|+++|.++.-++.+++.-.. .-++....+..+ +. ...+.
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~---------~~i~~~~~~~~~~i~~~~~~g 259 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGAT---------ATVNAGDPNAVEQVRELTGGG 259 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCc---------eEeCCCchhHHHHHHHHhCCC
Confidence 4567788888876 35556656655433 699999999999888653211 001111111100 00 11136
Q ss_pred eeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 231 fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+|+|+-.-.- . ..+..+.+.|++||++++.-.
T Consensus 260 ~d~vid~~G~------~--~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 260 VDYAFEMAGS------V--PALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CCEEEECCCC------h--HHHHHHHHHHhcCCEEEEEcc
Confidence 8988843220 1 466777788999999987643
No 344
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=87.36 E-value=6.7 Score=35.15 Aligned_cols=45 Identities=11% Similarity=-0.012 Sum_probs=34.7
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~ 199 (277)
..++.+||-+|||. |..+..+++....+|+++|.++.-++.+++.
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~ 209 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGF 209 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh
Confidence 45678999999965 6666667766544799999999999888653
No 345
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=87.33 E-value=5.5 Score=34.51 Aligned_cols=97 Identities=15% Similarity=0.009 Sum_probs=57.4
Q ss_pred CCCccEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEE--cCCCCCCCCCCce
Q 023787 156 NQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC--VPLQDFTPETGRY 231 (277)
Q Consensus 156 ~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~f 231 (277)
.++.+||-+|+| .|..+..+++.... .|+++|.++.-++.+++.-... -++... ..+.+. .....+
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~---------~i~~~~~~~~~~~~-~~~~g~ 188 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATA---------LAEPEVLAERQGGL-QNGRGV 188 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcE---------ecCchhhHHHHHHH-hCCCCC
Confidence 367789999876 45555556655443 5899999998888877642210 011000 000001 112358
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
|+|+-.-.- . ..++.+.+.|+|+|++++.-.
T Consensus 189 d~vid~~G~------~--~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 189 DVALEFSGA------T--AAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred CEEEECCCC------h--HHHHHHHHHhcCCCEEEEecc
Confidence 888753320 1 467778889999999998654
No 346
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=87.28 E-value=7.3 Score=34.59 Aligned_cols=98 Identities=20% Similarity=0.049 Sum_probs=56.9
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--CCCCc
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGR 230 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~-v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~ 230 (277)
..++.+||=+|+| .|..+..+++....+ |++++.++.-++.+++.-.. .-++....+...+. .....
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~---------~~i~~~~~~~~~~~~~~~~~~ 231 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGAD---------FVINSGQDDVQEIRELTSGAG 231 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC---------EEEcCCcchHHHHHHHhCCCC
Confidence 4467888888875 344555566554445 99999999888888653211 00111111100000 11236
Q ss_pred eeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 231 fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+|+|+-.-.- . ..+....+.|+++|++++.-
T Consensus 232 ~d~vid~~g~------~--~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 232 ADVAIECSGN------T--AARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CCEEEECCCC------H--HHHHHHHHHhhcCCEEEEEc
Confidence 8998844321 1 35566778899999998753
No 347
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=86.50 E-value=3.8 Score=36.50 Aligned_cols=97 Identities=10% Similarity=0.024 Sum_probs=61.1
Q ss_pred CCCCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEc-CCCC-C-CCCCC
Q 023787 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQD-F-TPETG 229 (277)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-d~~~-~-~~~~~ 229 (277)
..++.+||=.|+ |.|..+..+++....+|++++.++.-.+.+++.+... ..+++... +..+ + ....+
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~--------~vi~~~~~~~~~~~i~~~~~~ 220 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFD--------DAFNYKEEPDLDAALKRYFPN 220 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCc--------eeEEcCCcccHHHHHHHhCCC
Confidence 457789999886 5777887787765557999999988888887644321 11111110 1100 0 01114
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.+|+|+-.-. . ..+..+.+.|+++|+++..
T Consensus 221 gvd~v~d~~g-------~--~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 221 GIDIYFDNVG-------G--KMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred CcEEEEECCC-------H--HHHHHHHHHhccCcEEEEe
Confidence 6898875322 2 4567788999999999875
No 348
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=86.40 E-value=4.2 Score=33.53 Aligned_cols=72 Identities=15% Similarity=0.160 Sum_probs=51.5
Q ss_pred CCCccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 156 ~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
..+.+||-+|.- ||..+..++.+ ..+|+.+|+.|.|--.. ..+++|... ..+..+.+|+|
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~l--------------p~~v~Fr~~----~~~~~G~~Dli 103 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGFL--------------PNNVKFRNL----LKFIRGEVDLI 103 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhcC--------------CCCccHhhh----cCCCCCceeEE
Confidence 467899999986 88888888866 44799999998774433 223555443 33456899999
Q ss_pred ecchhhhcCChh
Q 023787 235 WVQWCIGHLTDD 246 (277)
Q Consensus 235 i~~~~l~~~~~~ 246 (277)
+-.-.+..+.++
T Consensus 104 vDlTGlGG~~Pe 115 (254)
T COG4017 104 VDLTGLGGIEPE 115 (254)
T ss_pred EeccccCCCCHH
Confidence 988777776643
No 349
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=86.30 E-value=3.2 Score=36.52 Aligned_cols=96 Identities=11% Similarity=0.048 Sum_probs=59.7
Q ss_pred CCCCccEEEee--ccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC-C-CCCCCc
Q 023787 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-TPETGR 230 (277)
Q Consensus 155 ~~~~~~VLDiG--cGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~ 230 (277)
..++.+||=.| .|.|..+..+++....+|++++.++.-.+.+++ +... .-++....++.+ + ....+.
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~-~Ga~--------~vi~~~~~~~~~~v~~~~~~g 211 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE-LGFD--------AVFNYKTVSLEEALKEAAPDG 211 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCCC--------EEEeCCCccHHHHHHHHCCCC
Confidence 45678888887 467778777877655579999999988888876 3221 111111111100 0 011246
Q ss_pred eeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 231 fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|+|+-.-. . ..+....+.|+++|+++..
T Consensus 212 vd~vld~~g-------~--~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 212 IDCYFDNVG-------G--EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred cEEEEECCC-------H--HHHHHHHHhhccCCEEEEE
Confidence 898884322 1 4567888899999999865
No 350
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=86.01 E-value=1.2 Score=40.72 Aligned_cols=99 Identities=13% Similarity=0.030 Sum_probs=53.5
Q ss_pred CCccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
++.+|+=+|+| .|..+...+.....+|+++|.++.-++.+...+.. .+.....+..++...-..+|+|+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~----------~v~~~~~~~~~l~~~l~~aDvVI 235 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG----------RIHTRYSNAYEIEDAVKRADLLI 235 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc----------eeEeccCCHHHHHHHHccCCEEE
Confidence 45679999998 56666666655444699999998777666554422 01110011111110013689999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
..-.....+ ...-+-+++.+.++||++++-
T Consensus 236 ~a~~~~g~~--~p~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 236 GAVLIPGAK--APKLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred EccccCCCC--CCcCcCHHHHhcCCCCCEEEE
Confidence 754221110 000122455566899987764
No 351
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=85.22 E-value=6.2 Score=35.02 Aligned_cols=96 Identities=16% Similarity=0.085 Sum_probs=57.5
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCC----CCCCCCC
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPET 228 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~ 228 (277)
..++.+||..|+| .|..+..+++... ..+++++.++...+.+++.-.. .-+.....++ ... .+.
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~---------~vi~~~~~~~~~~i~~~-~~~ 234 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGAT---------DIINPKNGDIVEQILEL-TGG 234 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCc---------EEEcCCcchHHHHHHHH-cCC
Confidence 4467788887775 4667777776655 3688888888777777653211 1111111111 111 122
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+.+|+|+....- . ..+..+.+.|+++|+++..
T Consensus 235 ~~~d~vld~~g~------~--~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 235 RGVDCVIEAVGF------E--ETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred CCCcEEEEccCC------H--HHHHHHHHHhhcCCEEEEE
Confidence 468988854221 1 4677788899999998864
No 352
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=84.58 E-value=12 Score=33.01 Aligned_cols=97 Identities=20% Similarity=0.044 Sum_probs=60.1
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcC----CCCCCCCCC
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP----LQDFTPETG 229 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d----~~~~~~~~~ 229 (277)
..++.+||-.|+|. |..+..+++....+|+++..+++..+.+++.... .-+.....+ +... .+..
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~---------~v~~~~~~~~~~~l~~~-~~~~ 226 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGAD---------DTINVGDEDVAARLREL-TDGE 226 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCC---------EEecCcccCHHHHHHHH-hCCC
Confidence 45677899998874 7777777776555799998888888887553211 111111111 1111 1224
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.+|+|+.+..- ...+..+.+.|+++|.++...
T Consensus 227 ~vd~vld~~g~--------~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 227 GADVVIDATGN--------PASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CCCEEEECCCC--------HHHHHHHHHHHhcCCEEEEEc
Confidence 58999865321 145677888999999988653
No 353
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=84.57 E-value=5.4 Score=36.55 Aligned_cols=111 Identities=19% Similarity=0.231 Sum_probs=64.4
Q ss_pred CCCCccEEEeeccccHHHHHHHHh------CCC--cEEEEeC----CHHHHHHHHHHhCCCCCCCCCCCcceeEEEc---
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIR------YFN--EVDLLEP----VSHFLDAARESLAPENHMAPDMHKATNFFCV--- 219 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~------~~~--~v~gvD~----S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~--- 219 (277)
.....+|+|+|.|.|.-=..|++. ++. ++|+|+. +..-++.+.+++....- ..+...+|...
T Consensus 108 g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~---~lgv~fef~~v~~~ 184 (374)
T PF03514_consen 108 GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFAR---SLGVPFEFHPVVVE 184 (374)
T ss_pred cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHH---HcCccEEEEecccC
Confidence 346679999999999754445443 222 8999999 78888887777643210 00122344432
Q ss_pred CCCCCC-----CCCCceeEEecchhhhcCChhh-----HHHHHHHHHhcCCCCcEEEEE
Q 023787 220 PLQDFT-----PETGRYDVIWVQWCIGHLTDDD-----FVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 220 d~~~~~-----~~~~~fD~Vi~~~~l~~~~~~d-----~~~~l~~~~r~LkpGG~lii~ 268 (277)
+++++. ..++..=+|-|...+||+.++. ....+-+..+.|+|.-.+++-
T Consensus 185 ~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 185 SLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE 243 (374)
T ss_pred chhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence 333332 2334444555777889986321 223344455578999555443
No 354
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=84.54 E-value=5.4 Score=35.35 Aligned_cols=106 Identities=12% Similarity=0.124 Sum_probs=71.8
Q ss_pred CccEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC---------C
Q 023787 158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---------P 226 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------~ 226 (277)
...|+-+|||-= ++..--..+. .|.=+|. |+.++.=++.+.+.+.. ......++..|+.+.. +
T Consensus 93 ~~qvViLgaGLD--TRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~---~~~~~~~Va~Dl~~~dw~~~L~~~G~ 166 (297)
T COG3315 93 IRQVVILGAGLD--TRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGAT---PPAHRRLVAVDLREDDWPQALAAAGF 166 (297)
T ss_pred ccEEEEeccccc--cceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCC---CCceEEEEeccccccchHHHHHhcCC
Confidence 468999999853 3322112332 5666665 55666656666654321 1225778888887432 2
Q ss_pred CCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 227 ~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
....-=++++-+++.|++.+...++|..+...+.||-.+++..
T Consensus 167 d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 167 DRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred CcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEec
Confidence 2345567888999999999999999999999999999888764
No 355
>PLN02740 Alcohol dehydrogenase-like
Probab=83.83 E-value=10 Score=34.47 Aligned_cols=98 Identities=13% Similarity=0.033 Sum_probs=56.8
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEc--CCCC-C-CCCC
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV--PLQD-F-TPET 228 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~--d~~~-~-~~~~ 228 (277)
..++.+||=+||| .|..+..+++.... +|+++|.++.-++.+++. ... .-++.... ++.+ . ....
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~-Ga~--------~~i~~~~~~~~~~~~v~~~~~ 266 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM-GIT--------DFINPKDSDKPVHERIREMTG 266 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc-CCc--------EEEecccccchHHHHHHHHhC
Confidence 4567899999886 34555556655443 699999999999888653 210 11111100 0100 0 0111
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCC-cEEEEEe
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKE 269 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpG-G~lii~e 269 (277)
+.+|+|+-.-.- . ..+......+++| |++++.-
T Consensus 267 ~g~dvvid~~G~------~--~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 267 GGVDYSFECAGN------V--EVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred CCCCEEEECCCC------h--HHHHHHHHhhhcCCCEEEEEc
Confidence 258988754331 1 4566777788886 9887754
No 356
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=83.53 E-value=4 Score=36.47 Aligned_cols=99 Identities=15% Similarity=0.050 Sum_probs=55.6
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC--CCCCCc
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGR 230 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~ 230 (277)
..++.+||=.||| .|..+..+++.... .|++++.++.-++.+++. ... .-++....+...+ ......
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-Ga~--------~~i~~~~~~~~~~~~~~~~~~ 228 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL-GAM--------QTFNSREMSAPQIQSVLRELR 228 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CCc--------eEecCcccCHHHHHHHhcCCC
Confidence 3467789999876 34455555555444 478999999888887543 211 0011110010000 011235
Q ss_pred ee-EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 231 YD-VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 231 fD-~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+| +|+-+-. . ...+....+.|++||.+++.-.
T Consensus 229 ~d~~v~d~~G-----~---~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 229 FDQLILETAG-----V---PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred CCeEEEECCC-----C---HHHHHHHHHHhhcCCEEEEEcc
Confidence 66 5543221 0 1467788899999999998743
No 357
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=82.79 E-value=15 Score=32.73 Aligned_cols=96 Identities=20% Similarity=0.159 Sum_probs=58.5
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcC-------CCCCC
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-------LQDFT 225 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~~-v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d-------~~~~~ 225 (277)
..++.+||-.|+|. |..+..+++....+ |++++.++...+.+++. ... .-+.....+ +.+.
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~~--------~vi~~~~~~~~~~~~~~~~~- 229 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL-GAT--------HTVNVRTEDTPESAEKIAEL- 229 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CCc--------EEeccccccchhHHHHHHHH-
Confidence 45677888888765 66777777665545 89999888888877553 221 001111111 1111
Q ss_pred CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 226 ~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.....+|+|+.+... . ..+....+.|+++|+++..
T Consensus 230 ~~~~~~d~vld~~g~------~--~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 230 LGGKGPDVVIECTGA------E--SCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred hCCCCCCEEEECCCC------H--HHHHHHHHHhhcCCEEEEE
Confidence 122459999864331 1 3677788899999998865
No 358
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=82.64 E-value=9.9 Score=33.12 Aligned_cols=84 Identities=14% Similarity=0.011 Sum_probs=51.0
Q ss_pred cEEEeeccc--cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecc
Q 023787 160 VALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (277)
Q Consensus 160 ~VLDiGcGt--G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~ 237 (277)
+|.=||+|. |.++..+.+.+. +|+++|.++..++.+.+.-. +.....+... -...|+|+.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g~------------~~~~~~~~~~----~~~aDlVila 64 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERGL------------VDEASTDLSL----LKDCDLVILA 64 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCC------------cccccCCHhH----hcCCCEEEEc
Confidence 466788884 456665655554 59999999988887765311 1101111111 1357888877
Q ss_pred hhhhcCChhhHHHHHHHHHhcCCCCcEE
Q 023787 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFF 265 (277)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~r~LkpGG~l 265 (277)
-.. .....+++++...++|+-++
T Consensus 65 vp~-----~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 65 LPI-----GLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred CCH-----HHHHHHHHHHHHhCCCCcEE
Confidence 543 34456788888888877443
No 359
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=82.37 E-value=5.5 Score=35.23 Aligned_cols=89 Identities=13% Similarity=0.061 Sum_probs=51.8
Q ss_pred ccEEEeeccc--cHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 159 LVALDCGSGI--GRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 159 ~~VLDiGcGt--G~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.+|.=||+|. +.++..+...+. .+|+++|.++..++.+++. +. ......+..+. -...|+|+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~----g~--------~~~~~~~~~~~---~~~aDvVi 71 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL----GL--------GDRVTTSAAEA---VKGADLVI 71 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC----CC--------CceecCCHHHH---hcCCCEEE
Confidence 5789999886 234444544444 3799999999887776542 11 00011121111 13578888
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
.+-... ....++..+...+++|..++.
T Consensus 72 iavp~~-----~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 72 LCVPVG-----ASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred ECCCHH-----HHHHHHHHHHhhCCCCCEEEe
Confidence 665432 234566777777888876543
No 360
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=82.32 E-value=5.4 Score=36.94 Aligned_cols=87 Identities=10% Similarity=-0.039 Sum_probs=51.8
Q ss_pred CCccEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.+.+|+-+|+|. |......++....+|+++|.++.-...+... |. ...++.+. . ...|+|+
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~----G~-----------~v~~leea-l--~~aDVVI 255 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMD----GF-----------RVMTMEEA-A--KIGDIFI 255 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhc----CC-----------EeCCHHHH-H--hcCCEEE
Confidence 578999999995 5555545544444799999888644333321 11 11122221 1 2468887
Q ss_pred cchhhhcCChhhHHHHHH-HHHhcCCCCcEEEEEe
Q 023787 236 VQWCIGHLTDDDFVSFFK-RAKVGLKPGGFFVLKE 269 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~-~~~r~LkpGG~lii~e 269 (277)
+.-. . ..++. +....+|+|++++..-
T Consensus 256 taTG-------~-~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 256 TATG-------N-KDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred ECCC-------C-HHHHHHHHHhcCCCCcEEEEEC
Confidence 6432 1 23444 4778899999998763
No 361
>PRK08267 short chain dehydrogenase; Provisional
Probab=82.22 E-value=14 Score=31.20 Aligned_cols=70 Identities=16% Similarity=0.071 Sum_probs=44.6
Q ss_pred cEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----CC----
Q 023787 160 VALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE---- 227 (277)
Q Consensus 160 ~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~---- 227 (277)
++|-.|++.|. ++..+++++. +|.+++.++..++...+.... .++.++.+|+.+.. ..
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~v~~~~~~~~~ 72 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELGA---------GNAWTGALDVTDRAAWDAALADFAA 72 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcC---------CceEEEEecCCCHHHHHHHHHHHHH
Confidence 57777776542 3344554555 599999988877766555432 34778888887643 00
Q ss_pred --CCceeEEecchh
Q 023787 228 --TGRYDVIWVQWC 239 (277)
Q Consensus 228 --~~~fD~Vi~~~~ 239 (277)
.+++|+|+.+..
T Consensus 73 ~~~~~id~vi~~ag 86 (260)
T PRK08267 73 ATGGRLDVLFNNAG 86 (260)
T ss_pred HcCCCCCEEEECCC
Confidence 356899886544
No 362
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=81.85 E-value=1.4 Score=37.03 Aligned_cols=61 Identities=15% Similarity=0.191 Sum_probs=45.3
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 224 (277)
.+.-|.+||.|.|..+..++..+..++..|+..+.++.-.+-..+.. ..+..++..|+..+
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa-------~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAA-------PGKLRIHHGDVLRF 110 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcC-------CcceEEecccccee
Confidence 45679999999999999999988889999999988877665444332 23455556665443
No 363
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=81.29 E-value=6.8 Score=35.44 Aligned_cols=95 Identities=15% Similarity=0.028 Sum_probs=52.5
Q ss_pred CCCccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEE-cCCCCCCCCCCceeE
Q 023787 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQDFTPETGRYDV 233 (277)
Q Consensus 156 ~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~fD~ 233 (277)
.++.+||-.|+| .|..+..+++....++++++.++.-...+.+.+... .-++... ..+... .+.+|+
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~--------~vi~~~~~~~~~~~---~~~~D~ 250 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGAD--------SFLVSTDPEKMKAA---IGTMDY 250 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCc--------EEEcCCCHHHHHhh---cCCCCE
Confidence 356788888886 456666666665546888888765443332222210 0000000 011111 124788
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
|+-.-. . . ..+..+.+.|++||+++..-
T Consensus 251 vid~~g-----~-~--~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 251 IIDTVS-----A-V--HALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred EEECCC-----C-H--HHHHHHHHHhcCCcEEEEeC
Confidence 874322 0 1 36677888999999998763
No 364
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=80.83 E-value=18 Score=32.07 Aligned_cols=101 Identities=15% Similarity=0.080 Sum_probs=56.7
Q ss_pred ccEEEeecc--ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 159 LVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 159 ~~VLDiGcG--tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
++|+=+||| -|.++..|.+.+. .|+.++-+++-++..++.- |+.-........+ ...... +.+.+.||+|+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~---Gl~i~~~g~~~~~-~~~~~~-~~~~~~~D~viv 76 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAG---GLTLVEQGQASLY-AIPAET-ADAAEPIHRLLL 76 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcC---CeEEeeCCcceee-ccCCCC-cccccccCEEEE
Confidence 479999998 3445555554444 5999999876666555421 1100000000111 111111 112257999886
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+-=-+ +...+++.+...+.++..+++.-|
T Consensus 77 ~vK~~-----~~~~al~~l~~~l~~~t~vv~lQN 105 (305)
T PRK05708 77 ACKAY-----DAEPAVASLAHRLAPGAELLLLQN 105 (305)
T ss_pred ECCHH-----hHHHHHHHHHhhCCCCCEEEEEeC
Confidence 54222 345788899999999998877655
No 365
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=80.29 E-value=4.2 Score=37.31 Aligned_cols=46 Identities=11% Similarity=-0.099 Sum_probs=37.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~ 201 (277)
..++.+||-|.+|...... ++...+.+|++||+||.++...+-+..
T Consensus 33 i~~~d~vl~ItSaG~N~L~-yL~~~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 33 IGPDDRVLTITSAGCNALD-YLLAGPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred CCCCCeEEEEccCCchHHH-HHhcCCceEEEEeCCHHHHHHHHHHHH
Confidence 6688899999887666666 466888999999999999888776553
No 366
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=80.20 E-value=6.1 Score=36.82 Aligned_cols=87 Identities=13% Similarity=0.025 Sum_probs=51.3
Q ss_pred CCccEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.+.+|+=+|+|. |......++....+|+.+|.++.-...+... |. + ..++.+.. ..+|+|+
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~----G~---------~--v~~l~eal---~~aDVVI 272 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMD----GF---------R--VMTMEEAA---ELGDIFV 272 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhc----CC---------E--ecCHHHHH---hCCCEEE
Confidence 578999999984 3333333434344799999988654443221 11 1 11222211 2579998
Q ss_pred cchhhhcCChhhHHHHHH-HHHhcCCCCcEEEEEe
Q 023787 236 VQWCIGHLTDDDFVSFFK-RAKVGLKPGGFFVLKE 269 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~-~~~r~LkpGG~lii~e 269 (277)
..-. . ..++. .....+|+|++++..-
T Consensus 273 ~aTG-------~-~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 273 TATG-------N-KDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred ECCC-------C-HHHHHHHHHhcCCCCCEEEEcC
Confidence 6532 1 13454 6778899999998763
No 367
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=80.07 E-value=21 Score=31.76 Aligned_cols=97 Identities=13% Similarity=0.058 Sum_probs=57.7
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCC----CCCCCCC
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPET 228 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~ 228 (277)
..++.+||-.|+| .|..+..+++.... .++++|.++.-.+.+++. ... .-++....+. ..+ ...
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~~--------~~v~~~~~~~~~~i~~~-~~~ 233 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY-GAT--------DIVDYKNGDVVEQILKL-TGG 233 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCc--------eEecCCCCCHHHHHHHH-hCC
Confidence 4567788888876 45566666655433 699999998888877753 210 0011111111 011 112
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
..+|+|+.+-.- . ..+..+.+.|+++|+++...
T Consensus 234 ~~~d~vld~~g~------~--~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 234 KGVDAVIIAGGG------Q--DTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred CCCcEEEECCCC------H--HHHHHHHHHhhcCCEEEEec
Confidence 468988843220 1 46788888999999998653
No 368
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=79.88 E-value=24 Score=32.44 Aligned_cols=100 Identities=15% Similarity=0.160 Sum_probs=58.1
Q ss_pred CCCCccEEEee--ccccHHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCC---CCC-
Q 023787 155 NNQHLVALDCG--SGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ---DFT- 225 (277)
Q Consensus 155 ~~~~~~VLDiG--cGtG~~s~~l~~~~---~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~---~~~- 225 (277)
..++.+||=+| .+.|..+..+++.. ..+|+++|.++.-++.+++....... ....+....+.. ++.
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~-----~~Ga~~~~i~~~~~~~~~~ 247 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAA-----SRGIELLYVNPATIDDLHA 247 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhcccccc-----ccCceEEEECCCccccHHH
Confidence 45667899887 34777877777663 23699999999999999885321100 000110111111 100
Q ss_pred -----CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 226 -----PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 226 -----~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
.....||+|+..-.- ...+....+.++++|.+++
T Consensus 248 ~v~~~t~g~g~D~vid~~g~--------~~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 248 TLMELTGGQGFDDVFVFVPV--------PELVEEADTLLAPDGCLNF 286 (410)
T ss_pred HHHHHhCCCCCCEEEEcCCC--------HHHHHHHHHHhccCCeEEE
Confidence 112368888753210 1466778888998886654
No 369
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=79.81 E-value=6.2 Score=36.28 Aligned_cols=73 Identities=14% Similarity=0.079 Sum_probs=47.9
Q ss_pred ccEEEeecc-ccHHHHHH-HHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC---CCCceeE
Q 023787 159 LVALDCGSG-IGRITKNL-LIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---ETGRYDV 233 (277)
Q Consensus 159 ~~VLDiGcG-tG~~s~~l-~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~fD~ 233 (277)
.+||=|||| .|+..... ++++-.+|+..|-|....+.+..... .++++...|+.+.+- --..+|+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~----------~~v~~~~vD~~d~~al~~li~~~d~ 71 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG----------GKVEALQVDAADVDALVALIKDFDL 71 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc----------ccceeEEecccChHHHHHHHhcCCE
Confidence 479999996 34444333 33343479999999888887766542 257788888877631 0135699
Q ss_pred Eecchhhh
Q 023787 234 IWVQWCIG 241 (277)
Q Consensus 234 Vi~~~~l~ 241 (277)
|++....+
T Consensus 72 VIn~~p~~ 79 (389)
T COG1748 72 VINAAPPF 79 (389)
T ss_pred EEEeCCch
Confidence 98765543
No 370
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.79 E-value=17 Score=30.15 Aligned_cols=103 Identities=14% Similarity=-0.038 Sum_probs=57.1
Q ss_pred CccEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----C---
Q 023787 158 HLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P--- 226 (277)
Q Consensus 158 ~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~--- 226 (277)
+.+||-.|++.|. .+..+++.+. +|++++-++.-++...+.... ..++.++.+|+.+.. +
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~--------~~~~~~~~~Dl~~~~~~~~~~~~~ 75 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSK--------YGNIHYVVGDVSSTESARNVIEKA 75 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHh--------cCCeEEEECCCCCHHHHHHHHHHH
Confidence 4688889886432 2233333455 699999988766655444432 124677788887532 0
Q ss_pred --CCCceeEEecchhhhcC-Chhh--------------HHHHHHHHHhcCCCCcEEEEEe
Q 023787 227 --ETGRYDVIWVQWCIGHL-TDDD--------------FVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 227 --~~~~fD~Vi~~~~l~~~-~~~d--------------~~~~l~~~~r~LkpGG~lii~e 269 (277)
.-+.+|.++.+...... +..+ ...+++.+...++++|.+++.-
T Consensus 76 ~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 76 AKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred HHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 01346777755432110 0001 1133556666777888777753
No 371
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=79.73 E-value=8.5 Score=35.75 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=70.8
Q ss_pred CCCCccEEEeec-ccc------HHHHHHHHhCCC-cEEEEe-CCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC
Q 023787 155 NNQHLVALDCGS-GIG------RITKNLLIRYFN-EVDLLE-PVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT 225 (277)
Q Consensus 155 ~~~~~~VLDiGc-GtG------~~s~~l~~~~~~-~v~gvD-~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 225 (277)
..++..|+=+|= |+| -++.++.+++.. -+++.| .-|.++++.+..... .++.|+..+-..-|
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q---------~~v~~f~~~~~~~P 167 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQ---------VGVPFFGSGTEKDP 167 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHH---------cCCceecCCCCCCH
Confidence 345677888873 333 445544443433 567777 456778888777654 33555544323222
Q ss_pred ----------CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 226 ----------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 226 ----------~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
+....||+|+.--+=.|--++++-.=+.+++..++|.=++++.|....
T Consensus 168 v~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G 225 (451)
T COG0541 168 VEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG 225 (451)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc
Confidence 223579999976653333356788889999999999999999987654
No 372
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=79.54 E-value=31 Score=30.09 Aligned_cols=92 Identities=26% Similarity=0.203 Sum_probs=55.7
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..++.+||=.|+| .|..+..+++....++++++.+++..+.+++ +... ... +..+. .....+|+
T Consensus 153 ~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~-~g~~--------~~~-----~~~~~-~~~~~~d~ 217 (319)
T cd08242 153 ITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR-LGVE--------TVL-----PDEAE-SEGGGFDV 217 (319)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-cCCc--------EEe-----Ccccc-ccCCCCCE
Confidence 4567788888764 3334444454444469999999999998877 3221 001 11111 12346999
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
|+.... . ...+..+.+.|+++|.+++..
T Consensus 218 vid~~g-----~---~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 218 VVEATG-----S---PSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred EEECCC-----C---hHHHHHHHHHhhcCCEEEEEc
Confidence 886421 1 135677778899999998743
No 373
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=79.44 E-value=6 Score=34.70 Aligned_cols=88 Identities=18% Similarity=0.029 Sum_probs=55.5
Q ss_pred ccEEEeecc--ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEE-cCCCCCCCCCCceeEE
Q 023787 159 LVALDCGSG--IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQDFTPETGRYDVI 234 (277)
Q Consensus 159 ~~VLDiGcG--tG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~fD~V 234 (277)
.+|+=+|.| .|.++..+..++.. .+++.|.+...++.+.+.--. ... .+.. .......|+|
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~-------------d~~~~~~~--~~~~~~aD~V 68 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVI-------------DELTVAGL--AEAAAEADLV 68 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcc-------------cccccchh--hhhcccCCEE
Confidence 467777776 45666666656665 589999998887777643211 110 1110 0112457999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEE
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (277)
+.+-.+. ....+++++...|+||..+.
T Consensus 69 ivavPi~-----~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 69 IVAVPIE-----ATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred EEeccHH-----HHHHHHHHhcccCCCCCEEE
Confidence 9876654 34478999998999987654
No 374
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=79.07 E-value=23 Score=31.96 Aligned_cols=99 Identities=14% Similarity=0.056 Sum_probs=57.3
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEc--CCCC-C-CCCC
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV--PLQD-F-TPET 228 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~--d~~~-~-~~~~ 228 (277)
..++.+||=+|+| .|..+..+++.... .|+++|.++.-++.+++. ... .-++.... ++.+ . ....
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~l-Ga~--------~~i~~~~~~~~~~~~v~~~~~ 254 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF-GAT--------DCVNPKDHDKPIQQVLVEMTD 254 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCC--------EEEcccccchHHHHHHHHHhC
Confidence 4567889988875 44555556655444 699999999988888653 211 11111110 0100 0 0112
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCC-cEEEEEec
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKEN 270 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpG-G~lii~e~ 270 (277)
+.+|+|+-.-. . ...+..+.+.|+++ |++++.-.
T Consensus 255 ~g~d~vid~~g--~------~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 255 GGVDYTFECIG--N------VKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred CCCcEEEECCC--C------hHHHHHHHHhhccCCCeEEEEcc
Confidence 36898875322 0 14667778889887 98887643
No 375
>PRK05872 short chain dehydrogenase; Provisional
Probab=78.95 E-value=22 Score=31.01 Aligned_cols=75 Identities=19% Similarity=0.172 Sum_probs=45.1
Q ss_pred CCccEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC--------
Q 023787 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------- 225 (277)
Q Consensus 157 ~~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------- 225 (277)
.+.++|-.|++.|. ++..+++.+. +|+.++.++..++...+.+.. ...+..+.+|+.+..
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~--------~~~~~~~~~Dv~d~~~v~~~~~~ 78 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGG--------DDRVLTVVADVTDLAAMQAAAEE 78 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcC--------CCcEEEEEecCCCHHHHHHHHHH
Confidence 35678888866542 3333444455 699999998877766555432 123445557776532
Q ss_pred --CCCCceeEEecchhh
Q 023787 226 --PETGRYDVIWVQWCI 240 (277)
Q Consensus 226 --~~~~~fD~Vi~~~~l 240 (277)
..-+.+|+++.+-.+
T Consensus 79 ~~~~~g~id~vI~nAG~ 95 (296)
T PRK05872 79 AVERFGGIDVVVANAGI 95 (296)
T ss_pred HHHHcCCCCEEEECCCc
Confidence 011468999876543
No 376
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=78.90 E-value=4.1 Score=31.83 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=24.3
Q ss_pred Eeecccc--HHHHHHHH--hCCC-cEEEEeCCHHHHHHHHHH
Q 023787 163 DCGSGIG--RITKNLLI--RYFN-EVDLLEPVSHFLDAARES 199 (277)
Q Consensus 163 DiGcGtG--~~s~~l~~--~~~~-~v~gvD~S~~~l~~a~~~ 199 (277)
|||++.| ..+..++. .+.. +|+++|++|...+..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 66555542 2332 799999999999999888
No 377
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=78.89 E-value=23 Score=32.02 Aligned_cols=99 Identities=15% Similarity=0.031 Sum_probs=57.9
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEE--cCCCC-C-CCCC
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC--VPLQD-F-TPET 228 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~--~d~~~-~-~~~~ 228 (277)
..++.+||=+||| .|..+..+++.... +|+++|.++.-++.+++.-.. .-++... .++.+ . ....
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~---------~~i~~~~~~~~~~~~v~~~~~ 253 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGAT---------DCVNPNDYDKPIQEVIVEITD 253 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCC---------eEEcccccchhHHHHHHHHhC
Confidence 4567899999986 35566666665443 699999999998888664211 1111110 00000 0 0011
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCC-cEEEEEec
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKEN 270 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpG-G~lii~e~ 270 (277)
+.+|+|+-.-.- ...+..+.+.+++| |++++.-.
T Consensus 254 ~g~d~vid~~G~--------~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 254 GGVDYSFECIGN--------VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred CCCCEEEECCCC--------HHHHHHHHHHhhcCCCeEEEEec
Confidence 358888744220 14567777888886 98887643
No 378
>PLN02827 Alcohol dehydrogenase-like
Probab=78.85 E-value=16 Score=33.35 Aligned_cols=97 Identities=13% Similarity=-0.006 Sum_probs=55.0
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEc--CCCC-CC-CCC
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV--PLQD-FT-PET 228 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~--d~~~-~~-~~~ 228 (277)
..++.+||-.|+| .|..+..+++. +...|+++|.++.-.+.+++.-.. .-++.... +... +. ...
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~---------~~i~~~~~~~~~~~~v~~~~~ 261 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVT---------DFINPNDLSEPIQQVIKRMTG 261 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCc---------EEEcccccchHHHHHHHHHhC
Confidence 4567899999875 34455555544 333688999999888888653211 00111100 1000 00 111
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCC-cEEEEE
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLK 268 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpG-G~lii~ 268 (277)
+.+|+|+-.-.- . ..+..+.+.|++| |++++.
T Consensus 262 ~g~d~vid~~G~------~--~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 262 GGADYSFECVGD------T--GIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred CCCCEEEECCCC------h--HHHHHHHHhhccCCCEEEEE
Confidence 358888743320 1 3567778889998 999875
No 379
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=78.70 E-value=23 Score=26.68 Aligned_cols=87 Identities=14% Similarity=0.093 Sum_probs=57.2
Q ss_pred CCccEEEeeccccH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC-CCceeEE
Q 023787 157 QHLVALDCGSGIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVI 234 (277)
Q Consensus 157 ~~~~VLDiGcGtG~-~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~V 234 (277)
...+|.|+|-|-=. .+..|.++++. |+++|+.+. +. ...+++...|+++-... -...|+|
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~g~d-v~atDI~~~-------~a----------~~g~~~v~DDitnP~~~iY~~A~lI 74 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAERGFD-VLATDINEK-------TA----------PEGLRFVVDDITNPNISIYEGADLI 74 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHcCCc-EEEEecccc-------cC----------cccceEEEccCCCccHHHhhCccce
Confidence 34599999998653 55666666775 999999875 11 13477888998874421 1257888
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|.-. ++++...+-.+.+.++ -.+++.
T Consensus 75 YSiRp-----ppEl~~~ildva~aVg--a~l~I~ 101 (129)
T COG1255 75 YSIRP-----PPELQSAILDVAKAVG--APLYIK 101 (129)
T ss_pred eecCC-----CHHHHHHHHHHHHhhC--CCEEEE
Confidence 77654 4477777777777554 444444
No 380
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=77.91 E-value=3.8 Score=36.05 Aligned_cols=73 Identities=11% Similarity=0.170 Sum_probs=58.8
Q ss_pred eCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC--CCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcE
Q 023787 187 EPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGF 264 (277)
Q Consensus 187 D~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~ 264 (277)
...+...+.+++++ .++.++.+|+.++.- +.+.+|.++...+-.++++..+..++.++.+-+.||..
T Consensus 293 yl~~~~YEsir~n~-----------~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~ 361 (414)
T COG5379 293 YLDEGVYESIRQNL-----------RRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGAR 361 (414)
T ss_pred hhchhhHHHHHhhh-----------hheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcE
Confidence 34455566666654 347888888887753 56899999999999999999999999999999999999
Q ss_pred EEEEec
Q 023787 265 FVLKEN 270 (277)
Q Consensus 265 lii~e~ 270 (277)
+++...
T Consensus 362 VifRta 367 (414)
T COG5379 362 VIFRTA 367 (414)
T ss_pred EEEecc
Confidence 999743
No 381
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=77.82 E-value=25 Score=31.46 Aligned_cols=95 Identities=18% Similarity=0.138 Sum_probs=54.3
Q ss_pred CCccEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCC-------CCCCCC
Q 023787 157 QHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-------QDFTPE 227 (277)
Q Consensus 157 ~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~-------~~~~~~ 227 (277)
++.+||=.|+| .|..+..+++.... +|++++.++.-.+.+++ +... .-+.....+. .+. ..
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~-~g~~--------~vi~~~~~~~~~~~~~i~~~-~~ 246 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE-FGAD--------ATIDIDELPDPQRRAIVRDI-TG 246 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-cCCC--------eEEcCcccccHHHHHHHHHH-hC
Confidence 56778888765 34455555655444 79999998887777754 2210 0011111110 111 11
Q ss_pred CCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
...+|+|+..-.- . ..+....+.|+++|++++.-
T Consensus 247 ~~~~d~vid~~g~------~--~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 247 GRGADVVIEASGH------P--AAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CCCCcEEEECCCC------h--HHHHHHHHHhccCCEEEEEc
Confidence 2468988854211 1 35667788999999998763
No 382
>PRK08265 short chain dehydrogenase; Provisional
Probab=77.41 E-value=27 Score=29.70 Aligned_cols=71 Identities=20% Similarity=0.212 Sum_probs=42.4
Q ss_pred CccEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----CC--
Q 023787 158 HLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE-- 227 (277)
Q Consensus 158 ~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~-- 227 (277)
+.++|-.|++.|. ++..+++.+. +|+.++.++.-++...+... .++.++.+|+.+.. +.
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----------~~~~~~~~Dl~~~~~~~~~~~~~ 74 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLG----------ERARFIATDITDDAAIERAVATV 74 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC----------CeeEEEEecCCCHHHHHHHHHHH
Confidence 4678888865442 3334444455 69999998765555444331 24667788887642 00
Q ss_pred ---CCceeEEecchh
Q 023787 228 ---TGRYDVIWVQWC 239 (277)
Q Consensus 228 ---~~~fD~Vi~~~~ 239 (277)
-+..|+++.+..
T Consensus 75 ~~~~g~id~lv~~ag 89 (261)
T PRK08265 75 VARFGRVDILVNLAC 89 (261)
T ss_pred HHHhCCCCEEEECCC
Confidence 146788886543
No 383
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=77.13 E-value=7.7 Score=34.30 Aligned_cols=87 Identities=20% Similarity=0.177 Sum_probs=49.3
Q ss_pred CCccEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.+.+|+=+|+|. |......+.....+|+++|.++...+.++.. + ..+. ++.++...-..+|+|+
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~----G---------~~~~--~~~~l~~~l~~aDiVI 215 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEM----G---------LSPF--HLSELAEEVGKIDIIF 215 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc----C---------Ceee--cHHHHHHHhCCCCEEE
Confidence 468999999984 3333333433334799999998766655432 1 1111 1111111114689999
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEE
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (277)
..-... -+-+++...++||++++
T Consensus 216 ~t~p~~--------~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 216 NTIPAL--------VLTKEVLSKMPPEALII 238 (296)
T ss_pred ECCChh--------hhhHHHHHcCCCCcEEE
Confidence 753211 12345667788988766
No 384
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=77.02 E-value=6.8 Score=30.95 Aligned_cols=98 Identities=13% Similarity=0.060 Sum_probs=54.5
Q ss_pred EEEeeccccHHHHHH-HHhCCCcEEEEeCCHHHHHHHHHHhCCCC-CCCCCCCcceeEEEcCCCCCCCCCCceeEEecch
Q 023787 161 ALDCGSGIGRITKNL-LIRYFNEVDLLEPVSHFLDAARESLAPEN-HMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (277)
Q Consensus 161 VLDiGcGtG~~s~~l-~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~ 238 (277)
|.-+|+|.+..+... +.....+|+....+++.++..++.-.... +.+.....++.+ ..|+.+.. ...|+|+..-
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~---~~ad~Iiiav 77 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL---EDADIIIIAV 77 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH---TT-SEEEE-S
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh---CcccEEEecc
Confidence 667888876654332 22334479999999988888877644211 111111223322 23433211 2457777544
Q ss_pred hhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 239 ~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
.- .....+++++...++++-.+++
T Consensus 78 Ps-----~~~~~~~~~l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 78 PS-----QAHREVLEQLAPYLKKGQIIIS 101 (157)
T ss_dssp -G-----GGHHHHHHHHTTTSHTT-EEEE
T ss_pred cH-----HHHHHHHHHHhhccCCCCEEEE
Confidence 32 2345899999999977766665
No 385
>PLN02494 adenosylhomocysteinase
Probab=76.48 E-value=5.5 Score=37.58 Aligned_cols=89 Identities=15% Similarity=0.014 Sum_probs=51.9
Q ss_pred CCccEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 157 ~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
.+.+|+-+|+|. |......++....+|+++|.++.-...+... + ..+ .++.+.. ...|+|+
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~----G---------~~v--v~leEal---~~ADVVI 314 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALME----G---------YQV--LTLEDVV---SEADIFV 314 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhc----C---------Cee--ccHHHHH---hhCCEEE
Confidence 578999999994 4444444433333799999987654444321 1 111 1222211 2579988
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
....-. .-+..+....||+||+|+..-.
T Consensus 315 ~tTGt~-------~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 315 TTTGNK-------DIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred ECCCCc-------cchHHHHHhcCCCCCEEEEcCC
Confidence 633211 1234677788999999988643
No 386
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.39 E-value=9.2 Score=34.26 Aligned_cols=100 Identities=15% Similarity=0.110 Sum_probs=54.8
Q ss_pred CccEEEeeccc--cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCC-------CCCCCCCCCcceeEEEcCCCCCCCCC
Q 023787 158 HLVALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP-------ENHMAPDMHKATNFFCVPLQDFTPET 228 (277)
Q Consensus 158 ~~~VLDiGcGt--G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~-------~~~~~~~~~~~~~~~~~d~~~~~~~~ 228 (277)
-.+|.=||+|+ ..++..++..++. |+..|++++.++.+++.+.. .+........++.+. .++.+. -
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~-V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~a---v 81 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLD-VVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEAC---V 81 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHHH---h
Confidence 45788999984 3455556666664 99999999988876654321 111000000112221 121110 1
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEE
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFF 265 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~l 265 (277)
...|+|+-+-. ..+. --..+++++.+.++|+-+|
T Consensus 82 ~~aDlViEavp-E~l~--vK~~lf~~l~~~~~~~aIl 115 (321)
T PRK07066 82 ADADFIQESAP-EREA--LKLELHERISRAAKPDAII 115 (321)
T ss_pred cCCCEEEECCc-CCHH--HHHHHHHHHHHhCCCCeEE
Confidence 34577765422 2111 2446889999999998743
No 387
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.38 E-value=28 Score=29.61 Aligned_cols=103 Identities=13% Similarity=0.049 Sum_probs=55.8
Q ss_pred CCccEEEeeccc----cH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC------
Q 023787 157 QHLVALDCGSGI----GR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------ 225 (277)
Q Consensus 157 ~~~~VLDiGcGt----G~-~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------ 225 (277)
.+..+|-.|++. |. .+..+++.+. +|..++.+....+..++..... ....++.+|+.+..
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~v~~~~ 79 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEEL--------DAPIFLPLDVREPGQLEAVF 79 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhh--------ccceEEecCcCCHHHHHHHH
Confidence 456889999764 32 3344444455 5888888754433232222111 11345667776542
Q ss_pred ----CCCCceeEEecchhhh----------cCChhhHHHH-----------HHHHHhcCCCCcEEEEE
Q 023787 226 ----PETGRYDVIWVQWCIG----------HLTDDDFVSF-----------FKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 226 ----~~~~~fD~Vi~~~~l~----------~~~~~d~~~~-----------l~~~~r~LkpGG~lii~ 268 (277)
..-++.|+++.+..+. .++.+++... .+.+...|+.+|.+++.
T Consensus 80 ~~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~i 147 (258)
T PRK07533 80 ARIAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTM 147 (258)
T ss_pred HHHHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEE
Confidence 0115789988765432 1233344333 35566677778887664
No 388
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=76.12 E-value=25 Score=34.58 Aligned_cols=93 Identities=13% Similarity=0.119 Sum_probs=57.0
Q ss_pred CccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCCCcee
Q 023787 158 HLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (277)
Q Consensus 158 ~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD 232 (277)
..+|+=+||| .|......+.+....++.+|.+++.++.+++. ....+.+|.++.. ..-++.|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-------------g~~v~~GDat~~~~L~~agi~~A~ 466 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF-------------GMKVFYGDATRMDLLESAGAAKAE 466 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc-------------CCeEEEEeCCCHHHHHhcCCCcCC
Confidence 4678888888 45444334434333599999999999988762 1345778877653 2224678
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
++++... +++....+-...|.+.|+-.++..
T Consensus 467 ~vvv~~~-----d~~~n~~i~~~ar~~~p~~~iiaR 497 (621)
T PRK03562 467 VLINAID-----DPQTSLQLVELVKEHFPHLQIIAR 497 (621)
T ss_pred EEEEEeC-----CHHHHHHHHHHHHHhCCCCeEEEE
Confidence 7776543 223333444455566777666654
No 389
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=75.84 E-value=17 Score=32.65 Aligned_cols=97 Identities=14% Similarity=0.066 Sum_probs=54.2
Q ss_pred CCCccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 156 ~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
.++.+||-+|+| .|..+..+++....++++++.++...+.+.+.+... ..+. ..+...+......+|+|
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~--------~~i~--~~~~~~~~~~~~~~D~v 248 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGAD--------DYLV--SSDAAEMQEAADSLDYI 248 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCc--------EEec--CCChHHHHHhcCCCcEE
Confidence 356788877765 555666666655446888888877666665544321 0000 00000000001247888
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+-.-. . ...+..+.+.|++||+++..-.
T Consensus 249 id~~g-----~---~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 249 IDTVP-----V---FHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred EECCC-----c---hHHHHHHHHHhccCCEEEEECC
Confidence 74322 0 1366677789999999987643
No 390
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=75.75 E-value=4.2 Score=35.09 Aligned_cols=74 Identities=16% Similarity=0.056 Sum_probs=45.3
Q ss_pred HHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchhhhcCChhhHHH
Q 023787 172 TKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVS 250 (277)
Q Consensus 172 s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~l~~~~~~d~~~ 250 (277)
+..|.+.++. +|+|+|.++..++.|.+.--. +-...+.+. . ..+|+|+.+-.+. ....
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~------------~~~~~~~~~--~--~~~DlvvlavP~~-----~~~~ 60 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALELGII------------DEASTDIEA--V--EDADLVVLAVPVS-----AIED 60 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSS------------SEEESHHHH--G--GCCSEEEE-S-HH-----HHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCe------------eeccCCHhH--h--cCCCEEEEcCCHH-----HHHH
Confidence 4556666643 899999999999988764211 111111111 1 2469999876654 4558
Q ss_pred HHHHHHhcCCCCcEEE
Q 023787 251 FFKRAKVGLKPGGFFV 266 (277)
Q Consensus 251 ~l~~~~r~LkpGG~li 266 (277)
+++++...+++|+++.
T Consensus 61 ~l~~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 61 VLEEIAPYLKPGAIVT 76 (258)
T ss_dssp HHHHHHCGS-TTSEEE
T ss_pred HHHHhhhhcCCCcEEE
Confidence 9999999999987764
No 391
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=75.65 E-value=32 Score=30.44 Aligned_cols=97 Identities=19% Similarity=0.117 Sum_probs=58.0
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcC---CCCCCCCCC
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP---LQDFTPETG 229 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~~-v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~ 229 (277)
..++.+||-.|+|. |..+..+++....+ +++++.++...+.+++. ... .-+...... +... ....
T Consensus 157 ~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~-g~~--------~~~~~~~~~~~~~~~~-~~~~ 226 (343)
T cd08236 157 ITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAREL-GAD--------DTINPKEEDVEKVREL-TEGR 226 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-CCC--------EEecCccccHHHHHHH-hCCC
Confidence 44667899998765 66777677665545 99999888888777542 110 001111000 1111 1123
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.+|+|+.+.. . ...+..+.+.|+++|.++...
T Consensus 227 ~~d~vld~~g-----~---~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 227 GADLVIEAAG-----S---PATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CCCEEEECCC-----C---HHHHHHHHHHhhcCCEEEEEc
Confidence 5899985421 1 146677888999999988763
No 392
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=75.61 E-value=6.2 Score=32.09 Aligned_cols=45 Identities=20% Similarity=0.406 Sum_probs=35.5
Q ss_pred CCCceeEEecchhhhcCCh----------hhHHHHHHHHHhcCCCCcEEEEEecC
Q 023787 227 ETGRYDVIWVQWCIGHLTD----------DDFVSFFKRAKVGLKPGGFFVLKENI 271 (277)
Q Consensus 227 ~~~~fD~Vi~~~~l~~~~~----------~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (277)
..+..|+|+++++|+-+.. ++++.++..+..+|+|+-.++..-..
T Consensus 47 ~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~ 101 (183)
T cd01842 47 EGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAM 101 (183)
T ss_pred cCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCC
Confidence 3478899999999886642 35788889999999999888886443
No 393
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=75.40 E-value=36 Score=28.60 Aligned_cols=74 Identities=16% Similarity=0.021 Sum_probs=44.2
Q ss_pred CccEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----C---
Q 023787 158 HLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P--- 226 (277)
Q Consensus 158 ~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~--- 226 (277)
+.++|=.|++.|. ++..+++.+. +|+.++.++..++...+.+... ..++.++.+|+.+.. .
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~-------~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQE-------GIKAHAAPFNVTHKQEVEAAIEHI 80 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhc-------CCeEEEEecCCCCHHHHHHHHHHH
Confidence 4578888865542 3334444454 6999998877766655544331 124566777877642 0
Q ss_pred --CCCceeEEecchh
Q 023787 227 --ETGRYDVIWVQWC 239 (277)
Q Consensus 227 --~~~~fD~Vi~~~~ 239 (277)
.-+.+|.|+.+..
T Consensus 81 ~~~~~~id~vi~~ag 95 (254)
T PRK08085 81 EKDIGPIDVLINNAG 95 (254)
T ss_pred HHhcCCCCEEEECCC
Confidence 1146899987654
No 394
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=75.38 E-value=7.8 Score=33.66 Aligned_cols=35 Identities=23% Similarity=0.190 Sum_probs=30.2
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCH
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS 190 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~ 190 (277)
..+++...|+|+-.|.++..+.+++-. |++||-.+
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr~m~-V~aVDng~ 243 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKRNMR-VYAVDNGP 243 (358)
T ss_pred hcCCceeeecccCCCccchhhhhcceE-EEEeccch
Confidence 468899999999999999999988774 99999643
No 395
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=75.00 E-value=8.2 Score=33.46 Aligned_cols=35 Identities=17% Similarity=0.292 Sum_probs=28.1
Q ss_pred CCCccEEEeeccccHHHHHHHHhCC------CcEEEEeCCH
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRYF------NEVDLLEPVS 190 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~------~~v~gvD~S~ 190 (277)
.++..++|+|||.|.++.+++.... ..+..||-..
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 4667999999999999998887652 2789999743
No 396
>PRK08324 short chain dehydrogenase; Validated
Probab=74.84 E-value=19 Score=35.77 Aligned_cols=103 Identities=23% Similarity=0.158 Sum_probs=60.1
Q ss_pred CCccEEEeecccc--H-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----CC-
Q 023787 157 QHLVALDCGSGIG--R-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE- 227 (277)
Q Consensus 157 ~~~~VLDiGcGtG--~-~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~- 227 (277)
.+.+||-.|++.| . ++..+++.+. +|+++|.++.-++.+.+.+... .++.++.+|+.+.. +.
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~--------~~v~~v~~Dvtd~~~v~~~~~~ 491 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGP--------DRALGVACDVTDEAAVQAAFEE 491 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhcc--------CcEEEEEecCCCHHHHHHHHHH
Confidence 4568888886433 3 2333343455 6999999988777666554331 24667778876532 10
Q ss_pred ----CCceeEEecchhhhc------CChhh-----------HHHHHHHHHhcCCC---CcEEEEE
Q 023787 228 ----TGRYDVIWVQWCIGH------LTDDD-----------FVSFFKRAKVGLKP---GGFFVLK 268 (277)
Q Consensus 228 ----~~~fD~Vi~~~~l~~------~~~~d-----------~~~~l~~~~r~Lkp---GG~lii~ 268 (277)
-+.+|+|+.+-.... .+.++ ...+++.+.+.+++ ||.+++.
T Consensus 492 ~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~v 556 (681)
T PRK08324 492 AALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFI 556 (681)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 146899886654221 12222 23456666777666 6777775
No 397
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=74.43 E-value=23 Score=33.72 Aligned_cols=44 Identities=11% Similarity=-0.026 Sum_probs=34.4
Q ss_pred CCccEEEeeccccHHHHHHHHhC--C---CcEEEEeCCHHHHHHHHHHh
Q 023787 157 QHLVALDCGSGIGRITKNLLIRY--F---NEVDLLEPVSHFLDAARESL 200 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~--~---~~v~gvD~S~~~l~~a~~~~ 200 (277)
+...|.|.-||+|.+........ . ..++|-+..+.+...++.+.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm 265 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNM 265 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHH
Confidence 45789999999999876544321 1 26999999999999998874
No 398
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=74.19 E-value=15 Score=32.69 Aligned_cols=43 Identities=14% Similarity=0.157 Sum_probs=27.4
Q ss_pred CCccEEEeeccc-cHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHH
Q 023787 157 QHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARES 199 (277)
Q Consensus 157 ~~~~VLDiGcGt-G~~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~ 199 (277)
++.+|+-+|+|. |......+.. +...|+.++.++.-.+...+.
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~ 221 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKE 221 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Confidence 578999999973 4433333333 556899999997655433333
No 399
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=73.76 E-value=13 Score=32.84 Aligned_cols=97 Identities=15% Similarity=0.099 Sum_probs=55.3
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..++.+||=.||| .|..+..+++....+++.++.++.-++.+++ +... .-+.....+..........+|+
T Consensus 161 ~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~-~g~~--------~~i~~~~~~~~~~~~~~~~~d~ 231 (333)
T cd08296 161 AKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARK-LGAH--------HYIDTSKEDVAEALQELGGAKL 231 (333)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH-cCCc--------EEecCCCccHHHHHHhcCCCCE
Confidence 4466788888864 4555555565544479999999888888854 2211 0011111111000000124788
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
|+.... . . ..+..+.+.|+++|.++..
T Consensus 232 vi~~~g----~--~--~~~~~~~~~l~~~G~~v~~ 258 (333)
T cd08296 232 ILATAP----N--A--KAISALVGGLAPRGKLLIL 258 (333)
T ss_pred EEECCC----c--h--HHHHHHHHHcccCCEEEEE
Confidence 874321 0 1 4677788899999999875
No 400
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=73.58 E-value=53 Score=29.19 Aligned_cols=98 Identities=21% Similarity=0.103 Sum_probs=56.3
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC-C-C-CCCC
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-T-PETG 229 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~-~~~~ 229 (277)
..++.+||=.|+| .|..+..+++.... .|++++.++.-.+.+++. ... .-++....++.+ + . ...+
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~-ga~--------~~i~~~~~~~~~~l~~~~~~~ 240 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL-GAT--------IVLDPTEVDVVAEVRKLTGGG 240 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CCC--------EEECCCccCHHHHHHHHhCCC
Confidence 4466788888764 34555555555443 699999999888888653 210 111111111100 0 0 1123
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.+|+|+-+... ...+..+.+.|+++|.++..-
T Consensus 241 ~~d~vid~~g~--------~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 241 GVDVSFDCAGV--------QATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred CCCEEEECCCC--------HHHHHHHHHhccCCCEEEEEc
Confidence 48998854321 135677888999999988753
No 401
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=73.51 E-value=40 Score=29.86 Aligned_cols=96 Identities=20% Similarity=0.148 Sum_probs=54.7
Q ss_pred CCCccEEEeecc-ccHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCC----CCCCCCCC
Q 023787 156 NQHLVALDCGSG-IGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPETG 229 (277)
Q Consensus 156 ~~~~~VLDiGcG-tG~~s~~l~~~~~~~-v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~~ 229 (277)
.++.+||-.|+| .|..+..+++....+ |++++-++.-.+.+++.-.. .-++....++ .++ .+..
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~---------~~v~~~~~~~~~~l~~~-~~~~ 229 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGAT---------YVVNPFKEDVVKEVADL-TDGE 229 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc---------EEEcccccCHHHHHHHh-cCCC
Confidence 356677777765 455666666655544 88888888777766543211 0011111111 011 1224
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.+|+|+.+.. . . ..+..+.+.|+++|+++..-
T Consensus 230 ~~d~vld~~g----~--~--~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 230 GVDVFLEMSG----A--P--KALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred CCCEEEECCC----C--H--HHHHHHHHhhcCCCEEEEEc
Confidence 6899986421 1 1 45778888999999988763
No 402
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=73.16 E-value=65 Score=29.60 Aligned_cols=99 Identities=9% Similarity=-0.031 Sum_probs=60.6
Q ss_pred cEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecchh
Q 023787 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWC 239 (277)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~~~ 239 (277)
+||-++=..|.++..++...+. ...| |--.-...+.++..+++. ...+++. +..+ ++ ++.+|+|+....
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~--~~~d-s~~~~~~~~~n~~~n~~~----~~~~~~~--~~~~-~~-~~~~d~vl~~~P 115 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPY--SIGD-SYISELATRENLRLNGID----ESSVKFL--DSTA-DY-PQQPGVVLIKVP 115 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCC--eeeh-HHHHHHHHHHHHHHcCCC----cccceee--cccc-cc-cCCCCEEEEEeC
Confidence 8999999999999988854332 2233 222223345566655441 1123333 2222 12 256999887654
Q ss_pred hhcCChhhHHHHHHHHHhcCCCCcEEEEEecCC
Q 023787 240 IGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (277)
Q Consensus 240 l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (277)
=. ...+...+..+.+.|.||+.++..++..
T Consensus 116 K~---~~~l~~~l~~l~~~l~~~~~ii~g~~~k 145 (378)
T PRK15001 116 KT---LALLEQQLRALRKVVTSDTRIIAGAKAR 145 (378)
T ss_pred CC---HHHHHHHHHHHHhhCCCCCEEEEEEecC
Confidence 21 1256678999999999999998877653
No 403
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=73.12 E-value=43 Score=31.10 Aligned_cols=69 Identities=17% Similarity=0.028 Sum_probs=43.5
Q ss_pred CCccEEEeeccccHHHHHHHH---hCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCCC
Q 023787 157 QHLVALDCGSGIGRITKNLLI---RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETG 229 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~---~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~ 229 (277)
...+|+=+|+| .++..+++ .....|+.+|.+++.++.+++... ...++.+|..+.. ..-.
T Consensus 230 ~~~~iiIiG~G--~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~-----------~~~~i~gd~~~~~~L~~~~~~ 296 (453)
T PRK09496 230 PVKRVMIVGGG--NIGYYLAKLLEKEGYSVKLIERDPERAEELAEELP-----------NTLVLHGDGTDQELLEEEGID 296 (453)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCC-----------CCeEEECCCCCHHHHHhcCCc
Confidence 45788888885 44444433 223369999999999888877542 2456777765432 1224
Q ss_pred ceeEEecch
Q 023787 230 RYDVIWVQW 238 (277)
Q Consensus 230 ~fD~Vi~~~ 238 (277)
.+|.|++..
T Consensus 297 ~a~~vi~~~ 305 (453)
T PRK09496 297 EADAFIALT 305 (453)
T ss_pred cCCEEEECC
Confidence 678877543
No 404
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=72.94 E-value=46 Score=29.12 Aligned_cols=91 Identities=18% Similarity=0.095 Sum_probs=53.6
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..++.+||=.||| .|..+..+++....+++.++.++...+.+++ +.. +.. .+.... ....+|+
T Consensus 165 ~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~-~g~------------~~~-~~~~~~--~~~~vD~ 228 (329)
T cd08298 165 LKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE-LGA------------DWA-GDSDDL--PPEPLDA 228 (329)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH-hCC------------cEE-eccCcc--CCCcccE
Confidence 3456677778765 2334444454444579999988887777744 221 100 111111 1245888
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
++..... . ..+..+.+.|+++|.++...
T Consensus 229 vi~~~~~------~--~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 229 AIIFAPV------G--ALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred EEEcCCc------H--HHHHHHHHHhhcCCEEEEEc
Confidence 7743211 1 46788899999999999764
No 405
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=72.91 E-value=41 Score=30.24 Aligned_cols=98 Identities=13% Similarity=-0.012 Sum_probs=55.7
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcC--CCC-C-CCCC
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP--LQD-F-TPET 228 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d--~~~-~-~~~~ 228 (277)
..++.+||=+|+| .|..+..+++.... +|+++|.++.-++.+++. .... -++....+ +.+ + ....
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~-ga~~--------~i~~~~~~~~~~~~~~~~~~ 252 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF-GATD--------FINPKDSDKPVSEVIREMTG 252 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCCc--------EeccccccchHHHHHHHHhC
Confidence 4567889888875 34455555655443 699999999888888653 2110 01111100 000 0 0011
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCC-cEEEEEe
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKE 269 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpG-G~lii~e 269 (277)
+.+|+|+-.-.- . ..+....+.|+++ |.+++.-
T Consensus 253 ~g~d~vid~~g~------~--~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 253 GGVDYSFECTGN------A--DLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred CCCCEEEECCCC------h--HHHHHHHHhcccCCCEEEEEc
Confidence 358988843220 1 4667778889885 9988753
No 406
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=72.63 E-value=4.4 Score=37.05 Aligned_cols=115 Identities=14% Similarity=0.021 Sum_probs=69.4
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCC----CCCCCCCCcceeEEEcCCCCCCC---
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPE----NHMAPDMHKATNFFCVPLQDFTP--- 226 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~----~~~~~~~~~~~~~~~~d~~~~~~--- 226 (277)
.++.....|+|.|.|.....++.... ..-.|+++....-+.+..+.... ...+.. ...++.+.+++.+-..
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~-~~~~~~i~gsf~~~~~v~e 268 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKK-PNKIETIHGSFLDPKRVTE 268 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCC-cCceeecccccCCHHHHHH
Confidence 56788999999999999987765433 25677776655444443322110 000000 2345666666654321
Q ss_pred CCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 227 ~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
-....++|+++++.. + +++..=+.++..-+++|-+++=.+.+.+
T Consensus 269 I~~eatvi~vNN~~F--d-p~L~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 269 IQTEATVIFVNNVAF--D-PELKLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred HhhcceEEEEecccC--C-HHHHHhhHHHHhhCCCcceEeccccccc
Confidence 124678898888742 2 3444455688888999999887766543
No 407
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=72.31 E-value=31 Score=29.55 Aligned_cols=74 Identities=16% Similarity=0.056 Sum_probs=44.2
Q ss_pred CccEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----CC--
Q 023787 158 HLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE-- 227 (277)
Q Consensus 158 ~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~-- 227 (277)
+.++|-.|++.|. ++..+++.+. +|+.++.++...+...+.+... ..++.++.+|+.+.. +.
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~v~~~~~~~ 81 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAA-------GGEALAVKADVLDKESLEQARQQI 81 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc-------CCeEEEEECCCCCHHHHHHHHHHH
Confidence 4678877775442 3333444455 5999999877666555544321 134677788887642 00
Q ss_pred ---CCceeEEecchh
Q 023787 228 ---TGRYDVIWVQWC 239 (277)
Q Consensus 228 ---~~~fD~Vi~~~~ 239 (277)
-+++|+++.+-.
T Consensus 82 ~~~~g~id~li~~ag 96 (278)
T PRK08277 82 LEDFGPCDILINGAG 96 (278)
T ss_pred HHHcCCCCEEEECCC
Confidence 146898886543
No 408
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=71.67 E-value=14 Score=32.42 Aligned_cols=102 Identities=14% Similarity=0.171 Sum_probs=68.3
Q ss_pred CCccEEEeeccccHHHHHHH-HhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC--CCceeE
Q 023787 157 QHLVALDCGSGIGRITKNLL-IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDV 233 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~-~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~fD~ 233 (277)
.+..|+-+| -.-..+.+++ ...+.+|..+|+.+..++.-.+.....|+ .+++.+.-|+.+--++ .++||+
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~------~~ie~~~~Dlr~plpe~~~~kFDv 224 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY------NNIEAFVFDLRNPLPEDLKRKFDV 224 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc------cchhheeehhcccChHHHHhhCCe
Confidence 456799999 3333444333 34566999999999999988887776554 4577778888764322 368998
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCC---cEEEEE
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPG---GFFVLK 268 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpG---G~lii~ 268 (277)
++.-.. ..++ .+..|+.+=...||.- |++.++
T Consensus 225 fiTDPp-eTi~--alk~FlgRGI~tLkg~~~aGyfgiT 259 (354)
T COG1568 225 FITDPP-ETIK--ALKLFLGRGIATLKGEGCAGYFGIT 259 (354)
T ss_pred eecCch-hhHH--HHHHHHhccHHHhcCCCccceEeee
Confidence 875443 2222 4556777777777765 777775
No 409
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=71.33 E-value=6.3 Score=30.31 Aligned_cols=75 Identities=16% Similarity=0.156 Sum_probs=45.5
Q ss_pred CCccEEEeeccc-c-HHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 157 QHLVALDCGSGI-G-RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 157 ~~~~VLDiGcGt-G-~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
.+.++|=+|+|. | .....+...++.+++.+.-+..-.+...+.+.. ..+.+. ++.++......+|+|
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~---------~~~~~~--~~~~~~~~~~~~Div 79 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGG---------VNIEAI--PLEDLEEALQEADIV 79 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTG---------CSEEEE--EGGGHCHHHHTESEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCc---------ccccee--eHHHHHHHHhhCCeE
Confidence 578999999973 2 234445555777899999987766665555522 223333 333332112479999
Q ss_pred ecchhhhc
Q 023787 235 WVQWCIGH 242 (277)
Q Consensus 235 i~~~~l~~ 242 (277)
+++-...+
T Consensus 80 I~aT~~~~ 87 (135)
T PF01488_consen 80 INATPSGM 87 (135)
T ss_dssp EE-SSTTS
T ss_pred EEecCCCC
Confidence 98765543
No 410
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=70.80 E-value=15 Score=32.57 Aligned_cols=102 Identities=17% Similarity=0.053 Sum_probs=51.6
Q ss_pred CCccEEEeecc--ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 157 QHLVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 157 ~~~~VLDiGcG--tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
...+|+=+|+| .|.++..|.+.+. .|+.+.-++ .+..+++ ++.-........+........+.....||+|
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~--~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 76 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSD--YEAVREN----GLQVDSVHGDFHLPPVQAYRSAEDMPPCDWV 76 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCC--HHHHHhC----CeEEEeCCCCeeecCceEEcchhhcCCCCEE
Confidence 34689999988 3345555554454 588887764 2222221 1100000000111100011111112579999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+.+---+ +...+++.+...++|++.++..-|
T Consensus 77 ilavK~~-----~~~~~~~~l~~~~~~~~~iv~lqN 107 (313)
T PRK06249 77 LVGLKTT-----ANALLAPLIPQVAAPDAKVLLLQN 107 (313)
T ss_pred EEEecCC-----ChHhHHHHHhhhcCCCCEEEEecC
Confidence 8664322 234677888888999998776544
No 411
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=70.58 E-value=9.9 Score=29.42 Aligned_cols=100 Identities=21% Similarity=0.229 Sum_probs=52.2
Q ss_pred EEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEE-cCCCCCCCCCCceeEEecch
Q 023787 161 ALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQDFTPETGRYDVIWVQW 238 (277)
Q Consensus 161 VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~fD~Vi~~~ 238 (277)
|+=+|+| .|.+....+.+...+|+.+.-++ -++..++.--.... . .....+.. ............||+|+.+-
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~D~viv~v 75 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITG--P--DGDETVQPPIVISAPSADAGPYDLVIVAV 75 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEE--T--TEEEEEEEEEEESSHGHHHSTESEEEE-S
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEe--c--ccceecccccccCcchhccCCCcEEEEEe
Confidence 4556776 34433333333344699999877 55554433110000 0 00000100 11111011246899998764
Q ss_pred hhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 239 ~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
=- .+...+++.+...+.|+..+++.-|
T Consensus 76 Ka-----~~~~~~l~~l~~~~~~~t~iv~~qN 102 (151)
T PF02558_consen 76 KA-----YQLEQALQSLKPYLDPNTTIVSLQN 102 (151)
T ss_dssp SG-----GGHHHHHHHHCTGEETTEEEEEESS
T ss_pred cc-----cchHHHHHHHhhccCCCcEEEEEeC
Confidence 21 1556899999999999988888765
No 412
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=70.40 E-value=46 Score=29.87 Aligned_cols=96 Identities=17% Similarity=0.082 Sum_probs=54.6
Q ss_pred CCCccEEEeecc-ccHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCC-CC--CCCCCc
Q 023787 156 NQHLVALDCGSG-IGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ-DF--TPETGR 230 (277)
Q Consensus 156 ~~~~~VLDiGcG-tG~~s~~l~~~~~~~-v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~-~~--~~~~~~ 230 (277)
.++.+||-.|+| .|..+..+++..... +++++.++...+.+++. ... .-+.....+.. .+ ......
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~-g~~--------~v~~~~~~~~~~~l~~~~~~~~ 256 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKEL-GAT--------HTVNAAKEDAVAAIREITGGRG 256 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh-CCc--------eEecCCcccHHHHHHHHhCCCC
Confidence 456678777664 555556566554444 99999998888877542 210 00010000100 00 012246
Q ss_pred eeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 231 fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|+|+..-. . . ..+..+.+.|+++|.++..
T Consensus 257 ~d~vld~vg-----~-~--~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 257 VDVVVEALG-----K-P--ETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred CCEEEEeCC-----C-H--HHHHHHHHHHhcCCEEEEE
Confidence 898885422 1 1 2567788899999999875
No 413
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=70.36 E-value=42 Score=32.41 Aligned_cols=90 Identities=12% Similarity=-0.040 Sum_probs=51.9
Q ss_pred ccEEEeeccccHHHHHHHH---hCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCCCce
Q 023787 159 LVALDCGSGIGRITKNLLI---RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY 231 (277)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~---~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~f 231 (277)
.+|+=+||| ..+..+++ .....++.+|.+++.++.+++. ....+.+|..+.. ..-++.
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-------------g~~~i~GD~~~~~~L~~a~i~~a 482 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-------------GIRAVLGNAANEEIMQLAHLDCA 482 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-------------CCeEEEcCCCCHHHHHhcCcccc
Confidence 466767766 33333333 2233699999999998888752 2456778887642 222467
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
|.++..-. +++-...+-.+.+...|.-.++..
T Consensus 483 ~~viv~~~-----~~~~~~~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 483 RWLLLTIP-----NGYEAGEIVASAREKRPDIEIIAR 514 (558)
T ss_pred CEEEEEcC-----ChHHHHHHHHHHHHHCCCCeEEEE
Confidence 86654422 112112233344556777776654
No 414
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=70.05 E-value=39 Score=33.08 Aligned_cols=92 Identities=11% Similarity=0.096 Sum_probs=54.0
Q ss_pred ccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCCCceeE
Q 023787 159 LVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYDV 233 (277)
Q Consensus 159 ~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD~ 233 (277)
.+|+=+|+| .|......+......++.+|.+++.++.+++. ....+.+|.++.. ..-.+.|+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-------------g~~v~~GDat~~~~L~~agi~~A~~ 467 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY-------------GYKVYYGDATQLELLRAAGAEKAEA 467 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC-------------CCeEEEeeCCCHHHHHhcCCccCCE
Confidence 466666665 23322222333333699999999999988752 1345778877643 22246777
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+++... +++....+-...|.+.|...++..
T Consensus 468 vv~~~~-----d~~~n~~i~~~~r~~~p~~~IiaR 497 (601)
T PRK03659 468 IVITCN-----EPEDTMKIVELCQQHFPHLHILAR 497 (601)
T ss_pred EEEEeC-----CHHHHHHHHHHHHHHCCCCeEEEE
Confidence 776543 222223344455667788877764
No 415
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=69.84 E-value=50 Score=28.30 Aligned_cols=95 Identities=17% Similarity=0.141 Sum_probs=55.7
Q ss_pred CCCCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCC----CCCCCCC
Q 023787 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPET 228 (277)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~ 228 (277)
..++.+||-.|| +.|..+..++......+++++.++...+.+++. ... .-+.....+. ... ...
T Consensus 137 ~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~-g~~--------~~~~~~~~~~~~~i~~~-~~~ 206 (323)
T cd08241 137 LQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARAL-GAD--------HVIDYRDPDLRERVKAL-TGG 206 (323)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHHc-CCc--------eeeecCCccHHHHHHHH-cCC
Confidence 346789999998 466666666666555699999998888777542 110 0011000011 001 112
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
..+|+++.+.. . ..+..+.+.++++|.++..
T Consensus 207 ~~~d~v~~~~g-------~--~~~~~~~~~~~~~g~~v~~ 237 (323)
T cd08241 207 RGVDVVYDPVG-------G--DVFEASLRSLAWGGRLLVI 237 (323)
T ss_pred CCcEEEEECcc-------H--HHHHHHHHhhccCCEEEEE
Confidence 35898875432 1 2445667788999988764
No 416
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=69.60 E-value=18 Score=32.96 Aligned_cols=93 Identities=16% Similarity=0.046 Sum_probs=51.9
Q ss_pred CCccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHH-HHHHHHHhCCCCCCCCCCCcceeEEE-cCCCCCCCCCCceeE
Q 023787 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHF-LDAARESLAPENHMAPDMHKATNFFC-VPLQDFTPETGRYDV 233 (277)
Q Consensus 157 ~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~-l~~a~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~fD~ 233 (277)
++.+||-.|+| .|..+..+++....+|++++.++.. .+.+++ +... .-++... ..+.+. . +.+|+
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~-lGa~--------~~i~~~~~~~v~~~--~-~~~D~ 245 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDR-LGAD--------SFLVTTDSQKMKEA--V-GTMDF 245 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHh-CCCc--------EEEcCcCHHHHHHh--h-CCCcE
Confidence 56788888875 4556666666554468999887554 444433 2110 0010000 001111 1 24788
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
|+-.-. . . ..+..+.+.+++||.++..-
T Consensus 246 vid~~G-----~-~--~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 246 IIDTVS-----A-E--HALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred EEECCC-----c-H--HHHHHHHHhhcCCCEEEEEc
Confidence 875422 0 1 36677788999999998764
No 417
>PRK07109 short chain dehydrogenase; Provisional
Probab=69.45 E-value=38 Score=30.28 Aligned_cols=75 Identities=17% Similarity=0.087 Sum_probs=45.4
Q ss_pred CCccEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC-------
Q 023787 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP------- 226 (277)
Q Consensus 157 ~~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------- 226 (277)
.+.+||=.|++.|. ++..+++++. +|+.++-++.-++...+.+... ..++.++.+|+.+...
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~-------g~~~~~v~~Dv~d~~~v~~~~~~ 78 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAA-------GGEALAVVADVADAEAVQAAADR 78 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHc-------CCcEEEEEecCCCHHHHHHHHHH
Confidence 34578888865442 2233444555 5999999887777665554332 2346677888876420
Q ss_pred ---CCCceeEEecchh
Q 023787 227 ---ETGRYDVIWVQWC 239 (277)
Q Consensus 227 ---~~~~fD~Vi~~~~ 239 (277)
.-+++|+++.+-.
T Consensus 79 ~~~~~g~iD~lInnAg 94 (334)
T PRK07109 79 AEEELGPIDTWVNNAM 94 (334)
T ss_pred HHHHCCCCCEEEECCC
Confidence 0146898886543
No 418
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=69.42 E-value=36 Score=29.62 Aligned_cols=98 Identities=16% Similarity=0.063 Sum_probs=53.0
Q ss_pred cEEEeecccc--HHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecc
Q 023787 160 VALDCGSGIG--RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (277)
Q Consensus 160 ~VLDiGcGtG--~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~ 237 (277)
+|+=+|+|.- .++..|.+.+. +|+.++.++..++..++.-. ... ............+.. +...+|+|+..
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~g~--~~~----~~~~~~~~~~~~~~~-~~~~~d~vila 73 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNENGL--RLE----DGEITVPVLAADDPA-ELGPQDLVILA 73 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHcCC--ccc----CCceeecccCCCChh-HcCCCCEEEEe
Confidence 5788898743 23443444444 69999987777666554311 000 000100000011111 11578988866
Q ss_pred hhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
---. +...+++.+...+.++..+++.-|
T Consensus 74 ~k~~-----~~~~~~~~l~~~l~~~~~iv~~~n 101 (304)
T PRK06522 74 VKAY-----QLPAALPSLAPLLGPDTPVLFLQN 101 (304)
T ss_pred cccc-----cHHHHHHHHhhhcCCCCEEEEecC
Confidence 5422 455788888888888877766544
No 419
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=69.05 E-value=62 Score=27.20 Aligned_cols=72 Identities=15% Similarity=0.129 Sum_probs=40.9
Q ss_pred CccEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----C---
Q 023787 158 HLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P--- 226 (277)
Q Consensus 158 ~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~--- 226 (277)
+.++|-.|++.|. ++..|++++. +|+.+|.++.. +...+.+... ...+.++.+|+.+.. .
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~~~-~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~ 78 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSELV-HEVAAELRAA-------GGEALALTADLETYAGAQAAMAAA 78 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCchHH-HHHHHHHHhc-------CCeEEEEEEeCCCHHHHHHHHHHH
Confidence 4678888876542 3444454555 59999987643 3333333221 234667778887642 0
Q ss_pred --CCCceeEEecch
Q 023787 227 --ETGRYDVIWVQW 238 (277)
Q Consensus 227 --~~~~fD~Vi~~~ 238 (277)
.-+.+|+++.+.
T Consensus 79 ~~~~~~id~lv~nA 92 (260)
T PRK12823 79 VEAFGRIDVLINNV 92 (260)
T ss_pred HHHcCCCeEEEECC
Confidence 014689888654
No 420
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=69.00 E-value=70 Score=27.33 Aligned_cols=73 Identities=8% Similarity=-0.070 Sum_probs=40.9
Q ss_pred CccEEEeeccc----cH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023787 158 HLVALDCGSGI----GR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (277)
Q Consensus 158 ~~~VLDiGcGt----G~-~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (277)
+..+|=.|++. |. .+..+++.+.. |+.++.+....+.+.+..... ....++.+|+.+..
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~G~~-vil~~r~~~~~~~~~~~~~~~--------~~~~~~~~Dl~~~~~v~~~~~ 76 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHREGAE-LAFTYQNDKLKGRVEEFAAQL--------GSDIVLPCDVAEDASIDAMFA 76 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHCCCE-EEEEecchhHHHHHHHHHhcc--------CCceEeecCCCCHHHHHHHHH
Confidence 46788888854 33 45556656664 888877643223333322211 12445677876632
Q ss_pred ---CCCCceeEEecchh
Q 023787 226 ---PETGRYDVIWVQWC 239 (277)
Q Consensus 226 ---~~~~~fD~Vi~~~~ 239 (277)
-.-+++|+++.+-.
T Consensus 77 ~~~~~~g~iD~linnAg 93 (262)
T PRK07984 77 ELGKVWPKFDGFVHSIG 93 (262)
T ss_pred HHHhhcCCCCEEEECCc
Confidence 01256899887654
No 421
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=68.75 E-value=20 Score=31.56 Aligned_cols=87 Identities=15% Similarity=0.153 Sum_probs=49.1
Q ss_pred cEEEeeccc--cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecc
Q 023787 160 VALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (277)
Q Consensus 160 ~VLDiGcGt--G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~ 237 (277)
+|-=||+|. +.++..+++.+. +|.+.|.++..++.+.+.... . ..+..++.......|+|++.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~g~~-----------~---~~s~~~~~~~~~~~dvIi~~ 66 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKEDRTT-----------G---VANLRELSQRLSAPRVVWVM 66 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCc-----------c---cCCHHHHHhhcCCCCEEEEE
Confidence 466678875 234555555555 599999999887776652110 0 01111111001235888765
Q ss_pred hhhhcCChhhHHHHHHHHHhcCCCCcEEE
Q 023787 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (277)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (277)
-. +.....++.++...|++|-+++
T Consensus 67 vp-----~~~~~~v~~~l~~~l~~g~ivi 90 (298)
T TIGR00872 67 VP-----HGIVDAVLEELAPTLEKGDIVI 90 (298)
T ss_pred cC-----chHHHHHHHHHHhhCCCCCEEE
Confidence 33 2245577888888888875443
No 422
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=68.57 E-value=8.8 Score=36.26 Aligned_cols=87 Identities=15% Similarity=0.015 Sum_probs=50.7
Q ss_pred CCCccEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 156 ~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
-.+.+|+=+|+|. |......+.....+|+++|.++.-...+... +. ...++.+.. ...|+|
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~----G~-----------~~~~leell---~~ADIV 313 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAME----GY-----------QVVTLEDVV---ETADIF 313 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhc----Cc-----------eeccHHHHH---hcCCEE
Confidence 3678999999996 4433333333333799998887654333221 11 112222221 357999
Q ss_pred ecchhhhcCChhhHHHHH-HHHHhcCCCCcEEEEE
Q 023787 235 WVQWCIGHLTDDDFVSFF-KRAKVGLKPGGFFVLK 268 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l-~~~~r~LkpGG~lii~ 268 (277)
++.-.- ..++ .+....+|||++|+-+
T Consensus 314 I~atGt--------~~iI~~e~~~~MKpGAiLINv 340 (476)
T PTZ00075 314 VTATGN--------KDIITLEHMRRMKNNAIVGNI 340 (476)
T ss_pred EECCCc--------ccccCHHHHhccCCCcEEEEc
Confidence 875321 1244 4677889999999875
No 423
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=68.51 E-value=48 Score=28.27 Aligned_cols=94 Identities=18% Similarity=0.178 Sum_probs=52.4
Q ss_pred CCCCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+||=.|+ +.|..+..+++....+++.++.++ ..+.+++ +... .-+.....+... ......+|
T Consensus 142 ~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~~-~g~~--------~~~~~~~~~~~~-~~~~~~~d 210 (309)
T cd05289 142 LKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLRS-LGAD--------EVIDYTKGDFER-AAAPGGVD 210 (309)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHHH-cCCC--------EEEeCCCCchhh-ccCCCCce
Confidence 346678888886 466666666655444688887666 5565533 2210 001101111111 11224688
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+++.+.. . ..+..+.+.|+++|.++..
T Consensus 211 ~v~~~~~-------~--~~~~~~~~~l~~~g~~v~~ 237 (309)
T cd05289 211 AVLDTVG-------G--ETLARSLALVKPGGRLVSI 237 (309)
T ss_pred EEEECCc-------h--HHHHHHHHHHhcCcEEEEE
Confidence 8875322 1 2567777889999998865
No 424
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=68.33 E-value=26 Score=30.58 Aligned_cols=100 Identities=12% Similarity=0.137 Sum_probs=53.5
Q ss_pred cEEEeeccc--cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCC---CCCCCCCC--------cceeEEEcCCCCCCC
Q 023787 160 VALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE---NHMAPDMH--------KATNFFCVPLQDFTP 226 (277)
Q Consensus 160 ~VLDiGcGt--G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~---~~~~~~~~--------~~~~~~~~d~~~~~~ 226 (277)
+|.=||+|. +.++..++..++ +|+++|.+++.++.+.++.... +....... .++.+ ..++.+.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~-- 78 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAA-- 78 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHh--
Confidence 578888873 234454555565 5999999999999887643210 00000000 01111 1222211
Q ss_pred CCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 227 ~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
-...|+|+.+-.-. .+-...++.++.+.++|+.+++.
T Consensus 79 -~~~aD~Vi~avpe~---~~~k~~~~~~l~~~~~~~~il~~ 115 (288)
T PRK09260 79 -VADADLVIEAVPEK---LELKKAVFETADAHAPAECYIAT 115 (288)
T ss_pred -hcCCCEEEEeccCC---HHHHHHHHHHHHhhCCCCcEEEE
Confidence 13468888654311 11134677888888888765543
No 425
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=67.79 E-value=54 Score=29.49 Aligned_cols=98 Identities=14% Similarity=0.030 Sum_probs=55.6
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEc--CCCC-C-CCCC
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV--PLQD-F-TPET 228 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~--d~~~-~-~~~~ 228 (277)
..++.+||=.|+| .|..+..+++.... +|++++.++.-++.+++. ... .-++.... ++.+ + ....
T Consensus 185 ~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~-Ga~--------~~i~~~~~~~~~~~~v~~~~~ 255 (369)
T cd08301 185 VKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKF-GVT--------EFVNPKDHDKPVQEVIAEMTG 255 (369)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CCc--------eEEcccccchhHHHHHHHHhC
Confidence 4567889888875 34455556655443 699999999988888653 211 01111110 0000 0 0112
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCC-cEEEEEe
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKE 269 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpG-G~lii~e 269 (277)
+.+|+|+-.-. . ...+..+.+.+++| |++++.-
T Consensus 256 ~~~d~vid~~G-----~---~~~~~~~~~~~~~~~g~~v~~g 289 (369)
T cd08301 256 GGVDYSFECTG-----N---IDAMISAFECVHDGWGVTVLLG 289 (369)
T ss_pred CCCCEEEECCC-----C---hHHHHHHHHHhhcCCCEEEEEC
Confidence 35788874321 0 14566677888996 9988754
No 426
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=67.58 E-value=44 Score=30.06 Aligned_cols=96 Identities=19% Similarity=0.076 Sum_probs=56.5
Q ss_pred CCCCccEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCC----CCCCCCC
Q 023787 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPET 228 (277)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~ 228 (277)
..++.+||-.|+|. |..+..+++.... .++++|.++.-.+.+++.-.. .-+.....++ .... .
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~---------~~i~~~~~~~~~~v~~~~--~ 252 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGAT---------HVINPKEEDLVAAIREIT--G 252 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCc---------EEecCCCcCHHHHHHHHh--C
Confidence 34667888888753 5566656655433 699999999888877653211 0000000010 1111 2
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
..+|+|+-+-.- . ..+..+.+.|+++|.++..-
T Consensus 253 ~~~d~vld~~g~------~--~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 253 GGVDYALDTTGV------P--AVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred CCCcEEEECCCC------c--HHHHHHHHHhccCCEEEEeC
Confidence 468988854210 1 35677888899999998764
No 427
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=67.57 E-value=22 Score=27.45 Aligned_cols=44 Identities=14% Similarity=0.030 Sum_probs=27.9
Q ss_pred CCccEEEeeccc-c-HHHHHHHHhCCCcEEEEeCCHHHHHHHHHHh
Q 023787 157 QHLVALDCGSGI-G-RITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (277)
Q Consensus 157 ~~~~VLDiGcGt-G-~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~ 200 (277)
.+.+|+-+|||. | ..+..+...+...|+++|.++.-.+...+.+
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~ 63 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERF 63 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH
Confidence 457899999973 2 2333333333457999999987766655443
No 428
>PRK07985 oxidoreductase; Provisional
Probab=67.54 E-value=49 Score=28.83 Aligned_cols=104 Identities=15% Similarity=0.082 Sum_probs=55.9
Q ss_pred CCccEEEeeccccH---HHHHHHHhCCCcEEEEeCC--HHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC------
Q 023787 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPV--SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------ 225 (277)
Q Consensus 157 ~~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S--~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------ 225 (277)
.+.++|-.|++.|. ++..|++.+. +|+.++.+ ....+...+..... ..++.++.+|+.+..
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~ 119 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLPVEEEDAQDVKKIIEEC-------GRKAVLLPGDLSDEKFARSLV 119 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCCcchhhHHHHHHHHHHc-------CCeEEEEEccCCCHHHHHHHH
Confidence 34688988875442 3444554555 47777643 23333333333221 234667778887632
Q ss_pred ----CCCCceeEEecchh-------hhcCChhhHH-----------HHHHHHHhcCCCCcEEEEE
Q 023787 226 ----PETGRYDVIWVQWC-------IGHLTDDDFV-----------SFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 226 ----~~~~~fD~Vi~~~~-------l~~~~~~d~~-----------~~l~~~~r~LkpGG~lii~ 268 (277)
..-+..|+++.+.. +..++.+++. .+++.+...++.+|.+++.
T Consensus 120 ~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~i 184 (294)
T PRK07985 120 HEAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITT 184 (294)
T ss_pred HHHHHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEE
Confidence 01145788875533 2223333332 3455666667778887775
No 429
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=67.41 E-value=40 Score=28.51 Aligned_cols=102 Identities=13% Similarity=0.047 Sum_probs=55.5
Q ss_pred CCccEEEeecc----ccH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----C
Q 023787 157 QHLVALDCGSG----IGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P 226 (277)
Q Consensus 157 ~~~~VLDiGcG----tG~-~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~ 226 (277)
.++++|-.|++ .|. ++..|++.+. +|+.++.+....+.+++. .. ..+.++.+|+.+.. +
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~-~~---------~~~~~~~~Dl~~~~~v~~~~ 74 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKL-VD---------EEDLLVECDVASDESIERAF 74 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhh-cc---------CceeEEeCCCCCHHHHHHHH
Confidence 35678888875 343 3444444555 588887764433333222 11 23567788887642 0
Q ss_pred -----CCCceeEEecchhhh----------cCChhhHH-----------HHHHHHHhcCCCCcEEEEEe
Q 023787 227 -----ETGRYDVIWVQWCIG----------HLTDDDFV-----------SFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 227 -----~~~~fD~Vi~~~~l~----------~~~~~d~~-----------~~l~~~~r~LkpGG~lii~e 269 (277)
.-+++|+++.+..+. .++.+++. .+.+.+...|+.+|.+++.-
T Consensus 75 ~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~is 143 (252)
T PRK06079 75 ATIKERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLT 143 (252)
T ss_pred HHHHHHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEe
Confidence 115789988765432 12323322 23455566677788776653
No 430
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=67.25 E-value=35 Score=30.32 Aligned_cols=99 Identities=17% Similarity=0.082 Sum_probs=55.8
Q ss_pred cEEEeecc--ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecc
Q 023787 160 VALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (277)
Q Consensus 160 ~VLDiGcG--tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~ 237 (277)
+|+-+||| .|.++..|++.+ ..|+.+--++. ++..+++ |+.-.....+..+... ....+.....+|+|+..
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~-~~~l~~~----GL~i~~~~~~~~~~~~-~~~~~~~~~~~Dlviv~ 74 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAG-HDVTLLVRSRR-LEALKKK----GLRIEDEGGNFTTPVV-AATDAEALGPADLVIVT 74 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCC-CeEEEEecHHH-HHHHHhC----CeEEecCCCccccccc-cccChhhcCCCCEEEEE
Confidence 68889998 455666666566 55766665554 6655554 2210000000011111 11111122479999865
Q ss_pred hhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
-=-+ +...+++.+...++|...+++.-|
T Consensus 75 vKa~-----q~~~al~~l~~~~~~~t~vl~lqN 102 (307)
T COG1893 75 VKAY-----QLEEALPSLAPLLGPNTVVLFLQN 102 (307)
T ss_pred eccc-----cHHHHHHHhhhcCCCCcEEEEEeC
Confidence 4322 455899999999999998887654
No 431
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=67.14 E-value=10 Score=29.03 Aligned_cols=87 Identities=16% Similarity=0.160 Sum_probs=46.7
Q ss_pred CCccEEEeeccccH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCC-CCceeEE
Q 023787 157 QHLVALDCGSGIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVI 234 (277)
Q Consensus 157 ~~~~VLDiGcGtG~-~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~V 234 (277)
...+|+|+|-|.=. .+..|.+.++ .|+++|+.+. .+. ..++++..|+.+-... =...|+|
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~---~a~--------------~g~~~v~DDif~P~l~iY~~a~lI 74 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR---KAP--------------EGVNFVVDDIFNPNLEIYEGADLI 74 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S---------------------STTEE---SSS--HHHHTTEEEE
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc---ccc--------------cCcceeeecccCCCHHHhcCCcEE
Confidence 34599999999754 4555555666 5999999876 111 2367788888873311 1368999
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
++... +.+++..+.++++.. |.-++|.
T Consensus 75 YSiRP-----P~El~~~il~lA~~v--~adlii~ 101 (127)
T PF03686_consen 75 YSIRP-----PPELQPPILELAKKV--GADLIIR 101 (127)
T ss_dssp EEES-------TTSHHHHHHHHHHH--T-EEEEE
T ss_pred EEeCC-----ChHHhHHHHHHHHHh--CCCEEEE
Confidence 98776 346667777776644 3555554
No 432
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=67.00 E-value=46 Score=30.57 Aligned_cols=105 Identities=10% Similarity=-0.058 Sum_probs=57.9
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEE-cCC----CCCCCC
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPL----QDFTPE 227 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~-~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~-~d~----~~~~~~ 227 (277)
..++.+||=.|+| .|..+..+++. +...++.+|.++.-++.+++.- . ..+.... .+. .+. ..
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~G-a---------~~v~~~~~~~~~~~v~~~-~~ 251 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFG-C---------ETVDLSKDATLPEQIEQI-LG 251 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcC-C---------eEEecCCcccHHHHHHHH-cC
Confidence 4466778777775 45555555654 3334667788888888887632 1 0011000 011 111 11
Q ss_pred CCceeEEecchhhh------cCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 228 TGRYDVIWVQWCIG------HLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 228 ~~~fD~Vi~~~~l~------~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
...+|+|+-.-.-. .....+....++.+.+.+++||++++.-.
T Consensus 252 ~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 252 EPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 23589888433211 00001223478888999999999998644
No 433
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=66.78 E-value=31 Score=30.13 Aligned_cols=99 Identities=17% Similarity=0.092 Sum_probs=50.8
Q ss_pred cEEEeeccccH--HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcC-CCCCCCCCCceeEEec
Q 023787 160 VALDCGSGIGR--ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-LQDFTPETGRYDVIWV 236 (277)
Q Consensus 160 ~VLDiGcGtG~--~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~fD~Vi~ 236 (277)
+|+=+|+|.-. ++..|.+.+. +|+.++. ++.++..++. ++.-........+ ... ..+.......+|+|+.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r-~~~~~~~~~~----g~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~vil 74 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR-PKRAKALRER----GLVIRSDHGDAVV-PGPVITDPEELTGPFDLVIL 74 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec-HHHHHHHHhC----CeEEEeCCCeEEe-cceeecCHHHccCCCCEEEE
Confidence 57888888543 3443444444 5999998 6666655432 1100000000000 000 1111111156898876
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
+---. ....+++.+...+.++..+++.-|
T Consensus 75 avk~~-----~~~~~~~~l~~~~~~~~~ii~~~n 103 (305)
T PRK12921 75 AVKAY-----QLDAAIPDLKPLVGEDTVIIPLQN 103 (305)
T ss_pred Eeccc-----CHHHHHHHHHhhcCCCCEEEEeeC
Confidence 54322 455788888888888877665433
No 434
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=66.78 E-value=23 Score=31.41 Aligned_cols=96 Identities=16% Similarity=0.070 Sum_probs=54.2
Q ss_pred CCCccEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCC---CCCCCCCCc
Q 023787 156 NQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL---QDFTPETGR 230 (277)
Q Consensus 156 ~~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~ 230 (277)
.++.+||-.|+|. |..+..+++.... .|++++-++.-.+.+++. ... .-+.....+. ... ...+.
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~-g~~--------~~~~~~~~~~~~~~~~-~~~~~ 231 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKM-GAD--------VVINPREEDVVEVKSV-TDGTG 231 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh-Ccc--------eeeCcccccHHHHHHH-cCCCC
Confidence 3566777777653 5666666666544 588888777766666542 210 0011111111 111 12246
Q ss_pred eeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 231 fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+|+|+.+-.- . ..+..+.+.|+++|.++...
T Consensus 232 vd~vld~~g~------~--~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 232 VDVVLEMSGN------P--KAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred CCEEEECCCC------H--HHHHHHHHHhccCCEEEEEc
Confidence 8998854320 1 35667788899999998753
No 435
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=66.13 E-value=55 Score=29.68 Aligned_cols=97 Identities=14% Similarity=-0.035 Sum_probs=53.9
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEc---C----CCCCC
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV---P----LQDFT 225 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~---d----~~~~~ 225 (277)
..++.+||=.|+| .|..+..+++.... .|++++.++.-.+.+++.-.. .-+..... + +..+
T Consensus 201 ~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~---------~~v~~~~~~~~~~~~~v~~~- 270 (384)
T cd08265 201 FRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGAD---------YVFNPTKMRDCLSGEKVMEV- 270 (384)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCC---------EEEcccccccccHHHHHHHh-
Confidence 4466788877765 33344445544444 699999888866666553211 00111110 0 1111
Q ss_pred CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 226 ~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.....+|+|+.+.. .....+..+.+.|+++|+++..
T Consensus 271 ~~g~gvDvvld~~g-------~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 271 TKGWGADIQVEAAG-------APPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred cCCCCCCEEEECCC-------CcHHHHHHHHHHHHcCCEEEEE
Confidence 12245898885422 1124667778889999999865
No 436
>PRK06701 short chain dehydrogenase; Provisional
Probab=65.89 E-value=37 Score=29.55 Aligned_cols=105 Identities=16% Similarity=0.149 Sum_probs=55.4
Q ss_pred CCccEEEeeccccH---HHHHHHHhCCCcEEEEeCCH-HHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----CC
Q 023787 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVS-HFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (277)
Q Consensus 157 ~~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~ 227 (277)
++.++|-.|++.|. ++..+++++. +|+.++.++ ..++.....+... ..++.++.+|+.+.. +.
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~ 116 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKE-------GVKCLLIPGDVSDEAFCKDAVE 116 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhc-------CCeEEEEEccCCCHHHHHHHHH
Confidence 34678888875543 3334444455 588887764 2233333333221 234667888887643 10
Q ss_pred -----CCceeEEecchhhh-------cCChhh-----------HHHHHHHHHhcCCCCcEEEEEe
Q 023787 228 -----TGRYDVIWVQWCIG-------HLTDDD-----------FVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 228 -----~~~fD~Vi~~~~l~-------~~~~~d-----------~~~~l~~~~r~LkpGG~lii~e 269 (277)
-+.+|+|+.+.... ..+.++ ...+++.+.+.++++|.+++.-
T Consensus 117 ~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 117 ETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred HHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 13678888543321 111111 2334555666667778777653
No 437
>PRK08507 prephenate dehydrogenase; Validated
Probab=65.43 E-value=36 Score=29.44 Aligned_cols=84 Identities=17% Similarity=0.179 Sum_probs=48.7
Q ss_pred cEEEeeccc--cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 160 VALDCGSGI--GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 160 ~VLDiGcGt--G~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
+|.=||+|. |.++..+.+.+.. .|+++|.++..++.+++. +. +.. ..+..+. ...|+|+.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~----g~--------~~~-~~~~~~~----~~aD~Vil 64 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALEL----GL--------VDE-IVSFEEL----KKCDVIFL 64 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHC----CC--------Ccc-cCCHHHH----hcCCEEEE
Confidence 466678774 4455555555543 699999999887776532 11 000 1121111 12688886
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEE
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (277)
+-.. .....++.++.. +++|..++
T Consensus 65 avp~-----~~~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 65 AIPV-----DAIIEILPKLLD-IKENTTII 88 (275)
T ss_pred eCcH-----HHHHHHHHHHhc-cCCCCEEE
Confidence 6543 345567788877 77776443
No 438
>PRK12937 short chain dehydrogenase; Provisional
Probab=65.28 E-value=64 Score=26.73 Aligned_cols=105 Identities=19% Similarity=0.165 Sum_probs=53.2
Q ss_pred CCccEEEeeccccH---HHHHHHHhCCCcEEEEeCC-HHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----CC
Q 023787 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPV-SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (277)
Q Consensus 157 ~~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~ 227 (277)
++.++|=.|++.|. ++..+++++. +++.+.-+ +...+...+.+... ..++.++.+|+.+.. +.
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~ 75 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADGF-AVAVNYAGSAAAADELVAEIEAA-------GGRAIAVQADVADAAAVTRLFD 75 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHHHhc-------CCeEEEEECCCCCHHHHHHHHH
Confidence 34678888875432 2333344455 46555432 33233333332221 235677888887632 00
Q ss_pred -----CCceeEEecchhhh------cCChhhHH-----------HHHHHHHhcCCCCcEEEEEe
Q 023787 228 -----TGRYDVIWVQWCIG------HLTDDDFV-----------SFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 228 -----~~~fD~Vi~~~~l~------~~~~~d~~-----------~~l~~~~r~LkpGG~lii~e 269 (277)
-+..|+++.+.... ..+.+++. .+++.+.+.++++|.+++.-
T Consensus 76 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 139 (245)
T PRK12937 76 AAETAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLS 139 (245)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEe
Confidence 13578888654321 22222221 33556666777888887763
No 439
>PRK10083 putative oxidoreductase; Provisional
Probab=65.27 E-value=79 Score=27.79 Aligned_cols=98 Identities=23% Similarity=0.204 Sum_probs=54.4
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC-CCCCCCc
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGR 230 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~--~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~ 230 (277)
..++.+||=.|+| .|..+..+++. +...++++|.++.-.+.+++.-... -++....++.+ +.-....
T Consensus 158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~---------~i~~~~~~~~~~~~~~g~~ 228 (339)
T PRK10083 158 PTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADW---------VINNAQEPLGEALEEKGIK 228 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcE---------EecCccccHHHHHhcCCCC
Confidence 4567788888865 34444555552 5446888999988888877642210 01111111100 0001123
Q ss_pred eeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 231 fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+|+|+.... . ...+....+.|+++|+++...
T Consensus 229 ~d~vid~~g-------~-~~~~~~~~~~l~~~G~~v~~g 259 (339)
T PRK10083 229 PTLIIDAAC-------H-PSILEEAVTLASPAARIVLMG 259 (339)
T ss_pred CCEEEECCC-------C-HHHHHHHHHHhhcCCEEEEEc
Confidence 456664322 0 146777888999999998764
No 440
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=65.13 E-value=36 Score=30.11 Aligned_cols=76 Identities=16% Similarity=0.135 Sum_probs=54.2
Q ss_pred CCCccEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023787 156 NQHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (277)
-.+..||==|.|.|. .+..+++++. ++...|+++...+.-.+.+...| ++..+.+|+.+..
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g--------~~~~y~cdis~~eei~~~a~ 106 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG--------EAKAYTCDISDREEIYRLAK 106 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC--------ceeEEEecCCCHHHHHHHHH
Confidence 356788888888884 5666676666 59999999988887777766532 4677888887643
Q ss_pred ---CCCCceeEEecchhh
Q 023787 226 ---PETGRYDVIWVQWCI 240 (277)
Q Consensus 226 ---~~~~~fD~Vi~~~~l 240 (277)
-+-+..|+++.+..+
T Consensus 107 ~Vk~e~G~V~ILVNNAGI 124 (300)
T KOG1201|consen 107 KVKKEVGDVDILVNNAGI 124 (300)
T ss_pred HHHHhcCCceEEEecccc
Confidence 223689999866543
No 441
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=65.06 E-value=71 Score=27.73 Aligned_cols=95 Identities=15% Similarity=0.121 Sum_probs=54.6
Q ss_pred CCCCccEEEeecc--ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCC----CCCCCCC
Q 023787 155 NNQHLVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPET 228 (277)
Q Consensus 155 ~~~~~~VLDiGcG--tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~ 228 (277)
..++.+||-.|++ .|..+..++.....+++.++.++.-.+.++... . ...++....+. ... ...
T Consensus 164 ~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~-~~~ 233 (342)
T cd08266 164 LRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKELG-A--------DYVIDYRKEDFVREVREL-TGK 233 (342)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcC-C--------CeEEecCChHHHHHHHHH-hCC
Confidence 3456788888874 566666666665557999999887777664421 1 00010000000 000 112
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
..+|+++.+..- ..+..+.+.|+++|.++..
T Consensus 234 ~~~d~~i~~~g~---------~~~~~~~~~l~~~G~~v~~ 264 (342)
T cd08266 234 RGVDVVVEHVGA---------ATWEKSLKSLARGGRLVTC 264 (342)
T ss_pred CCCcEEEECCcH---------HHHHHHHHHhhcCCEEEEE
Confidence 468988865331 2455667788999998875
No 442
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=65.02 E-value=38 Score=27.95 Aligned_cols=44 Identities=14% Similarity=0.018 Sum_probs=28.4
Q ss_pred CCccEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHh
Q 023787 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (277)
Q Consensus 157 ~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~ 200 (277)
.+++|+=+|+|. |......+.....+|+++|.++..++...+.+
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~ 71 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELF 71 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHc
Confidence 567899999982 32222222223336999999998777766653
No 443
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=64.92 E-value=66 Score=28.39 Aligned_cols=95 Identities=20% Similarity=0.118 Sum_probs=55.1
Q ss_pred CCccEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCC----CCCCCCCCc
Q 023787 157 QHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPETGR 230 (277)
Q Consensus 157 ~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~~~ 230 (277)
++.+||-.|+|. |..+..+++.... .|++++.++.-.+.+++.-.. .-+.....+. ..+ .....
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~---------~~~~~~~~~~~~~~~~~-~~~~~ 232 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGAT---------RAVNVAKEDLRDVMAEL-GMTEG 232 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCc---------EEecCccccHHHHHHHh-cCCCC
Confidence 566777777753 5666666665444 588888888877776653211 0011111110 011 11246
Q ss_pred eeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 231 fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+|+|+.+..- . ..+..+.+.|+++|.++...
T Consensus 233 ~d~v~d~~g~------~--~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 233 FDVGLEMSGA------P--SAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred CCEEEECCCC------H--HHHHHHHHHHhcCCEEEEEe
Confidence 8888753221 1 46677788999999998874
No 444
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=64.90 E-value=78 Score=27.59 Aligned_cols=95 Identities=15% Similarity=0.081 Sum_probs=58.1
Q ss_pred CCCCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCC----CCCCCCC
Q 023787 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPET 228 (277)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~ 228 (277)
..++.+||=.|+ +.|..+..+++....++++++.++...+.+++.+... .-+.....+. .... .
T Consensus 143 ~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~g~~--------~~~~~~~~~~~~~v~~~~--~ 212 (329)
T cd05288 143 PKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELGFD--------AAINYKTPDLAEALKEAA--P 212 (329)
T ss_pred CCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhcCCc--------eEEecCChhHHHHHHHhc--c
Confidence 345678888884 4677777777765557999998888888776643221 0011110010 1111 1
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+.+|+++.+.. . ..+..+.+.|+++|.++..
T Consensus 213 ~~~d~vi~~~g-------~--~~~~~~~~~l~~~G~~v~~ 243 (329)
T cd05288 213 DGIDVYFDNVG-------G--EILDAALTLLNKGGRIALC 243 (329)
T ss_pred CCceEEEEcch-------H--HHHHHHHHhcCCCceEEEE
Confidence 46898874322 1 3677788889999998865
No 445
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=64.46 E-value=11 Score=31.32 Aligned_cols=33 Identities=15% Similarity=0.055 Sum_probs=24.6
Q ss_pred CCccEEEeeccc-cH-HHHHHHHhCCCcEEEEeCC
Q 023787 157 QHLVALDCGSGI-GR-ITKNLLIRYFNEVDLLEPV 189 (277)
Q Consensus 157 ~~~~VLDiGcGt-G~-~s~~l~~~~~~~v~gvD~S 189 (277)
...+||=+|||. |. .+..|+..+..+++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 346899999993 44 5555666677789999976
No 446
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=64.37 E-value=16 Score=32.24 Aligned_cols=46 Identities=20% Similarity=0.144 Sum_probs=35.7
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhC
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~ 201 (277)
...+.+|.-+|+|.-.... ++.+.+.+|++||+++..+..-+-++.
T Consensus 61 ~g~ghrivtigSGGcn~L~-ylsr~Pa~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 61 LGIGHRIVTIGSGGCNMLA-YLSRAPARIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred cCCCcEEEEecCCcchHHH-HhhcCCceeEEEeCCHHHHHHHHHHHH
Confidence 3467899999999766666 445778899999999998887665543
No 447
>PRK06484 short chain dehydrogenase; Validated
Probab=63.97 E-value=47 Score=31.47 Aligned_cols=72 Identities=19% Similarity=0.101 Sum_probs=44.9
Q ss_pred CCccEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----C--
Q 023787 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P-- 226 (277)
Q Consensus 157 ~~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-- 226 (277)
.+.++|=.|++.|. ++..+++++. +|+.++.++.-++...+.+. .+..++.+|+.+.. +
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----------~~~~~~~~D~~~~~~~~~~~~~ 72 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGD-QVVVADRNVERARERADSLG----------PDHHALAMDVSDEAQIREGFEQ 72 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC----------CceeEEEeccCCHHHHHHHHHH
Confidence 45678888887762 3444454455 59999988877766555442 23556777876542 0
Q ss_pred ---CCCceeEEecchh
Q 023787 227 ---ETGRYDVIWVQWC 239 (277)
Q Consensus 227 ---~~~~fD~Vi~~~~ 239 (277)
.-+..|+++.+..
T Consensus 73 ~~~~~g~iD~li~nag 88 (520)
T PRK06484 73 LHREFGRIDVLVNNAG 88 (520)
T ss_pred HHHHhCCCCEEEECCC
Confidence 1146899887654
No 448
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=63.66 E-value=25 Score=31.50 Aligned_cols=98 Identities=15% Similarity=0.015 Sum_probs=58.7
Q ss_pred CCCCccEEEeec-cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEE-EcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGS-GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF-CVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGc-GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~fD 232 (277)
..++.+|--+|. |-|.++..+++...-+|+++|-|..--+.+-+++....+ +.+. ..|.-. .-.+..|
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~f--------v~~~~d~d~~~--~~~~~~d 248 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVF--------VDSTEDPDIMK--AIMKTTD 248 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCccee--------EEecCCHHHHH--HHHHhhc
Confidence 456777766664 479999999988777899999998777877777655211 1111 111100 0012344
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
.++-.-+ .+. + ..+..+.+.||++|.+++.
T Consensus 249 g~~~~v~--~~a--~--~~~~~~~~~lk~~Gt~V~v 278 (360)
T KOG0023|consen 249 GGIDTVS--NLA--E--HALEPLLGLLKVNGTLVLV 278 (360)
T ss_pred Ccceeee--ecc--c--cchHHHHHHhhcCCEEEEE
Confidence 4331111 001 1 3456677899999999987
No 449
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=62.72 E-value=63 Score=28.87 Aligned_cols=117 Identities=14% Similarity=0.137 Sum_probs=64.6
Q ss_pred CCCccEEEeeccccHHHHHHHHhC-CC--cEEEEeCCHHHHHHHHHHhCCCC------CCCCC-C--------CcceeEE
Q 023787 156 NQHLVALDCGSGIGRITKNLLIRY-FN--EVDLLEPVSHFLDAARESLAPEN------HMAPD-M--------HKATNFF 217 (277)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~--~v~gvD~S~~~l~~a~~~~~~~~------~~~~~-~--------~~~~~~~ 217 (277)
.....|+.+|||.-.....|...+ .. .++=||+++........+..... ....+ . ..+-..+
T Consensus 86 ~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~~ 165 (335)
T KOG2918|consen 86 DGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHLI 165 (335)
T ss_pred CCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceeee
Confidence 356789999999998888888766 23 66777777666555521111110 00000 0 0122223
Q ss_pred EcCCCCCC----------CCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEecCCC
Q 023787 218 CVPLQDFT----------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (277)
Q Consensus 218 ~~d~~~~~----------~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (277)
-+|+.++. ...+-.-++++--++.|++++.-..+++.+...-. .+.+++-|.+.+
T Consensus 166 g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~-~a~fv~YEQi~~ 230 (335)
T KOG2918|consen 166 GCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFE-NAHFVNYEQINP 230 (335)
T ss_pred ccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCC-cccEEEEeccCC
Confidence 33444321 00112233445557889988777778887777554 455566666543
No 450
>PRK12939 short chain dehydrogenase; Provisional
Probab=62.37 E-value=58 Score=27.02 Aligned_cols=73 Identities=12% Similarity=-0.005 Sum_probs=43.3
Q ss_pred CccEEEeeccccHHHHHHH----HhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----CC-
Q 023787 158 HLVALDCGSGIGRITKNLL----IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE- 227 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~----~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~- 227 (277)
+.++|=.|+ +|..+..++ +++. +|++++-++..++...+.+... ..++.++.+|+.+.. +.
T Consensus 7 ~~~vlItGa-~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~ 77 (250)
T PRK12939 7 GKRALVTGA-ARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAA-------GGRAHAIAADLADPASVQRFFDA 77 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhc-------CCcEEEEEccCCCHHHHHHHHHH
Confidence 467887775 344444343 3344 5888988877666655544321 235778888887642 00
Q ss_pred ----CCceeEEecchh
Q 023787 228 ----TGRYDVIWVQWC 239 (277)
Q Consensus 228 ----~~~fD~Vi~~~~ 239 (277)
-+..|+|+.+..
T Consensus 78 ~~~~~~~id~vi~~ag 93 (250)
T PRK12939 78 AAAALGGLDGLVNNAG 93 (250)
T ss_pred HHHHcCCCCEEEECCC
Confidence 046888886543
No 451
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=62.35 E-value=24 Score=31.64 Aligned_cols=75 Identities=17% Similarity=0.008 Sum_probs=48.1
Q ss_pred EEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEc--------CCCCCCCCCCce
Q 023787 161 ALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV--------PLQDFTPETGRY 231 (277)
Q Consensus 161 VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~--------d~~~~~~~~~~f 231 (277)
-+|||.|+-.+-..+-.+.+. ..+++|+.....+.|+.+...+++. ..+..+.. |.... .++.-|
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~ls-----s~ikvV~~~~~ktll~d~~~~-~~e~~y 179 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLS-----SLIKVVKVEPQKTLLMDALKE-ESEIIY 179 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccc-----cceeeEEecchhhcchhhhcc-Ccccee
Confidence 589988876554433333222 6889999999999999999887763 33333333 11111 113469
Q ss_pred eEEecchhhh
Q 023787 232 DVIWVQWCIG 241 (277)
Q Consensus 232 D~Vi~~~~l~ 241 (277)
|++.|+..|.
T Consensus 180 dFcMcNPPFf 189 (419)
T KOG2912|consen 180 DFCMCNPPFF 189 (419)
T ss_pred eEEecCCchh
Confidence 9999987653
No 452
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=62.33 E-value=89 Score=27.14 Aligned_cols=96 Identities=11% Similarity=0.094 Sum_probs=57.3
Q ss_pred CCCCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcC-CC-CC--CCCC
Q 023787 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-LQ-DF--TPET 228 (277)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d-~~-~~--~~~~ 228 (277)
..++.+||=.|+ +.|..+..+++.....++.+..++...+.+++ +... .-+.....+ .. .+ ....
T Consensus 138 ~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~~--------~~~~~~~~~~~~~~~~~~~~~ 208 (334)
T PTZ00354 138 VKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKK-LAAI--------ILIRYPDEEGFAPKVKKLTGE 208 (334)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCCc--------EEEecCChhHHHHHHHHHhCC
Confidence 345678888874 57777777776655567778888888888854 3210 001110111 00 00 0112
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
..+|+++.+.. . ..+..+.+.|+++|.++..
T Consensus 209 ~~~d~~i~~~~-------~--~~~~~~~~~l~~~g~~i~~ 239 (334)
T PTZ00354 209 KGVNLVLDCVG-------G--SYLSETAEVLAVDGKWIVY 239 (334)
T ss_pred CCceEEEECCc-------h--HHHHHHHHHhccCCeEEEE
Confidence 46899885432 1 4667788889999998865
No 453
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=62.32 E-value=59 Score=28.57 Aligned_cols=99 Identities=14% Similarity=0.035 Sum_probs=52.5
Q ss_pred cEEEeeccc--cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCC-CCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 160 VALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPEN-HMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 160 ~VLDiGcGt--G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
+|.=||+|. +.++..+++.+. .|+++|.++..++..++...... .........+.. ..+..+. ....|+|+.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~D~vi~ 77 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAEA---LADADLILV 77 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHHH---HhCCCEEEE
Confidence 577788873 233444444444 59999999888877665421100 000000001111 1121111 135688886
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+-.- .....++..+...++|+.+++..
T Consensus 78 ~v~~-----~~~~~v~~~l~~~~~~~~~vi~~ 104 (325)
T PRK00094 78 AVPS-----QALREVLKQLKPLLPPDAPIVWA 104 (325)
T ss_pred eCCH-----HHHHHHHHHHHhhcCCCCEEEEE
Confidence 6543 24557888888888887765544
No 454
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=62.01 E-value=81 Score=25.23 Aligned_cols=93 Identities=16% Similarity=0.108 Sum_probs=59.3
Q ss_pred CCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC---C--CCCCce
Q 023787 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---T--PETGRY 231 (277)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~--~~~~~f 231 (277)
...+|+-|||=+-.....-......++...|+....-... .+ .|..-|...- + + .++|
T Consensus 25 ~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~---------------~~-~F~fyD~~~p~~~~~~l-~~~~ 87 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFG---------------GD-EFVFYDYNEPEELPEEL-KGKF 87 (162)
T ss_pred CCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcC---------------Cc-ceEECCCCChhhhhhhc-CCCc
Confidence 4579999999886655432011222799999985443311 11 2333333321 1 2 3799
Q ss_pred eEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 232 D~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
|+|++--.+ +..+-+..+...+.-++|+++.+++.
T Consensus 88 d~vv~DPPF--l~~ec~~k~a~ti~~L~k~~~kii~~ 122 (162)
T PF10237_consen 88 DVVVIDPPF--LSEECLTKTAETIRLLLKPGGKIILC 122 (162)
T ss_pred eEEEECCCC--CCHHHHHHHHHHHHHHhCccceEEEe
Confidence 999998887 66555667777777788999988875
No 455
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=61.92 E-value=85 Score=28.47 Aligned_cols=44 Identities=14% Similarity=0.029 Sum_probs=33.4
Q ss_pred CCCCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 023787 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (277)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~ 198 (277)
..++.+||=.|+ +.|..+..+++....++++++.++.-.+.+++
T Consensus 191 ~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~ 236 (393)
T cd08246 191 VKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRA 236 (393)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence 446778999986 46667776776655568889999998888876
No 456
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=61.83 E-value=62 Score=27.67 Aligned_cols=68 Identities=21% Similarity=0.213 Sum_probs=46.4
Q ss_pred ccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecc
Q 023787 159 LVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (277)
Q Consensus 159 ~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~ 237 (277)
.++|-+|.= +|.+....+...+ +|+.+|+.|.+.+... .++.|...- . ..+..+|+|+-.
T Consensus 43 k~~lI~G~YltG~~iA~~L~~~~-eV~lvDI~p~lk~ll~--------------~~i~F~~~~-~---~~~~~~DlIID~ 103 (252)
T PF06690_consen 43 KQALIFGAYLTGNFIASALSKKC-EVTLVDIHPHLKELLN--------------ENIKFMEFR-N---GLEGNPDLIIDT 103 (252)
T ss_pred ceEEEEEEEeehHHHHHHhccCc-eEEEEeCcHHHHHHhc--------------CCCceeecc-C---CCCCCCCEEEEC
Confidence 489999975 6666666665666 7999999998877652 345565221 1 113589999987
Q ss_pred hhhhcCCh
Q 023787 238 WCIGHLTD 245 (277)
Q Consensus 238 ~~l~~~~~ 245 (277)
-.+..+.+
T Consensus 104 TGlGGv~~ 111 (252)
T PF06690_consen 104 TGLGGVDP 111 (252)
T ss_pred CCCCCCCH
Confidence 77777663
No 457
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=61.78 E-value=92 Score=27.47 Aligned_cols=96 Identities=16% Similarity=0.107 Sum_probs=53.6
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcC----CCCCCCCC
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP----LQDFTPET 228 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d----~~~~~~~~ 228 (277)
..++.+||=.|+| .|..+..+++... .++++++.++.-.+.+++.-.. .-++....+ +..+. ..
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~---------~~v~~~~~~~~~~i~~~~-~~ 233 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGAT---------HTVNSAKGDAIEQVLELT-DG 233 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCC---------ceeccccccHHHHHHHHh-CC
Confidence 3456677777764 3334444555544 5788899988777777653211 111111111 11111 22
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
..+|+|+.+- . . ...+..+.+.|+++|.++..
T Consensus 234 ~~~d~vld~~-----g--~-~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 234 RGVDVVIEAV-----G--I-PATFELCQELVAPGGHIANV 265 (345)
T ss_pred CCCCEEEECC-----C--C-HHHHHHHHHhccCCcEEEEe
Confidence 4689888543 1 1 13567788999999999864
No 458
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=61.76 E-value=1.1e+02 Score=27.46 Aligned_cols=97 Identities=15% Similarity=0.088 Sum_probs=56.6
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcC----CCCCCCCC
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP----LQDFTPET 228 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d----~~~~~~~~ 228 (277)
..++.+||-.|+| .|..+..+++.... .|++++.++...+.+++ +... ..+.....+ +..+ .+.
T Consensus 180 ~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~-~g~~--------~vv~~~~~~~~~~l~~~-~~~ 249 (363)
T cd08279 180 VRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR-FGAT--------HTVNASEDDAVEAVRDL-TDG 249 (363)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH-hCCe--------EEeCCCCccHHHHHHHH-cCC
Confidence 3466788888875 46666666665444 49999998888777753 2210 000000001 1111 112
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
..+|+|+..-.- ...+..+.+.|+++|+++...
T Consensus 250 ~~vd~vld~~~~--------~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 250 RGADYAFEAVGR--------AATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred CCCCEEEEcCCC--------hHHHHHHHHHhhcCCeEEEEe
Confidence 468988743321 145677888899999998753
No 459
>PLN02688 pyrroline-5-carboxylate reductase
Probab=61.53 E-value=41 Score=28.81 Aligned_cols=85 Identities=12% Similarity=0.058 Sum_probs=48.9
Q ss_pred cEEEeeccc--cHHHHHHHHhCC---CcEEEE-eCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 160 VALDCGSGI--GRITKNLLIRYF---NEVDLL-EPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 160 ~VLDiGcGt--G~~s~~l~~~~~---~~v~gv-D~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
+|.=||||. +.++..+++.++ .+++++ |.++.-.+.+.+. + +.. ..+..+.. ...|+
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~----g---------~~~-~~~~~e~~---~~aDv 64 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSL----G---------VKT-AASNTEVV---KSSDV 64 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHc----C---------CEE-eCChHHHH---hcCCE
Confidence 466788885 445555665554 258888 8888766554331 1 111 11222111 24688
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEE
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (277)
|+.+-. +.....++..+...+++|..++
T Consensus 65 Vil~v~-----~~~~~~vl~~l~~~~~~~~~iI 92 (266)
T PLN02688 65 IILAVK-----PQVVKDVLTELRPLLSKDKLLV 92 (266)
T ss_pred EEEEEC-----cHHHHHHHHHHHhhcCCCCEEE
Confidence 876652 3456678888877777776544
No 460
>PRK12744 short chain dehydrogenase; Provisional
Probab=61.18 E-value=86 Score=26.32 Aligned_cols=101 Identities=14% Similarity=0.061 Sum_probs=52.1
Q ss_pred CccEEEeeccccHHHHHH----HHhCCCcEEEEeCC----HHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----
Q 023787 158 HLVALDCGSGIGRITKNL----LIRYFNEVDLLEPV----SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---- 225 (277)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l----~~~~~~~v~gvD~S----~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 225 (277)
+.++|=.|++.| ++..+ ++.+. ++..++.+ ....+...+.+... ..++.++.+|+.+..
T Consensus 8 ~k~vlItGa~~g-IG~~~a~~l~~~G~-~vv~i~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~D~~~~~~~~~ 78 (257)
T PRK12744 8 GKVVLIAGGAKN-LGGLIARDLAAQGA-KAVAIHYNSAASKADAEETVAAVKAA-------GAKAVAFQADLTTAAAVEK 78 (257)
T ss_pred CcEEEEECCCch-HHHHHHHHHHHCCC-cEEEEecCCccchHHHHHHHHHHHHh-------CCcEEEEecCcCCHHHHHH
Confidence 467888886554 33334 33444 45566432 23333333322211 134677788887542
Q ss_pred -C-----CCCceeEEecchhh------hcCChhhHH-----------HHHHHHHhcCCCCcEEEE
Q 023787 226 -P-----ETGRYDVIWVQWCI------GHLTDDDFV-----------SFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 226 -~-----~~~~fD~Vi~~~~l------~~~~~~d~~-----------~~l~~~~r~LkpGG~lii 267 (277)
+ .-+..|+++.+... ...+.+++. .+++.+.+.++++|.+++
T Consensus 79 ~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~ 143 (257)
T PRK12744 79 LFDDAKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVT 143 (257)
T ss_pred HHHHHHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEE
Confidence 0 11468988866543 223333322 245666677777776654
No 461
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=60.92 E-value=92 Score=26.54 Aligned_cols=93 Identities=16% Similarity=0.106 Sum_probs=56.8
Q ss_pred CCCCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCC-----C-C
Q 023787 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-----T-P 226 (277)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~-~ 226 (277)
..++.+||=.|+ +.|..+..+++.....+++++.++...+.+++ +... .++...-..+ . .
T Consensus 134 ~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~~-----------~~~~~~~~~~~~~~~~~~ 201 (320)
T cd05286 134 VKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARA-AGAD-----------HVINYRDEDFVERVREIT 201 (320)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH-CCCC-----------EEEeCCchhHHHHHHHHc
Confidence 346678898884 46777777776655579999999888887754 2210 1111110000 0 1
Q ss_pred CCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 227 ~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
....+|+|+.+.. . ..+..+.+.|+++|.++..
T Consensus 202 ~~~~~d~vl~~~~-------~--~~~~~~~~~l~~~g~~v~~ 234 (320)
T cd05286 202 GGRGVDVVYDGVG-------K--DTFEGSLDSLRPRGTLVSF 234 (320)
T ss_pred CCCCeeEEEECCC-------c--HhHHHHHHhhccCcEEEEE
Confidence 1246999985322 1 3456677889999998865
No 462
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=60.88 E-value=1e+02 Score=26.50 Aligned_cols=89 Identities=21% Similarity=0.157 Sum_probs=56.5
Q ss_pred CCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 157 QHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 157 ~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
++.+|+=.|+ +.|..+..+++....++++++.++.-.+.+++ +.. . ..+ .+..++ .++.+|++
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~--------~---~~~-~~~~~~--~~~~~d~v 196 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRE-LGA--------A---EVV-VGGSEL--SGAPVDLV 196 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCC--------c---EEE-eccccc--cCCCceEE
Confidence 4678888887 46666666666655579999988888888866 322 0 001 011111 12468988
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
+..-. . ..+....+.|+++|+++...
T Consensus 197 l~~~g-------~--~~~~~~~~~l~~~G~~v~~g 222 (305)
T cd08270 197 VDSVG-------G--PQLARALELLAPGGTVVSVG 222 (305)
T ss_pred EECCC-------c--HHHHHHHHHhcCCCEEEEEe
Confidence 85422 1 34677888999999998653
No 463
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=60.83 E-value=52 Score=27.98 Aligned_cols=102 Identities=16% Similarity=-0.018 Sum_probs=51.3
Q ss_pred CccEEEeec-cccHH----HHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023787 158 HLVALDCGS-GIGRI----TKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (277)
Q Consensus 158 ~~~VLDiGc-GtG~~----s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (277)
+.++|=.|+ |++.+ +..+++.+. +|+.++......+..++.....+ ...++.+|+.+..
T Consensus 6 ~k~vlItGas~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~Dv~d~~~v~~~~~ 76 (260)
T PRK06997 6 GKRILITGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFG--------SDLVFPCDVASDEQIDALFA 76 (260)
T ss_pred CcEEEEeCCCCCCcHHHHHHHHHHHCCC-eEEEEccchHHHHHHHHHHHhcC--------CcceeeccCCCHHHHHHHHH
Confidence 468899996 33333 444444555 47777543222222222111110 1224567776542
Q ss_pred ---CCCCceeEEecchhhh-----------cCChhhHHHH-----------HHHHHhcCCCCcEEEEE
Q 023787 226 ---PETGRYDVIWVQWCIG-----------HLTDDDFVSF-----------FKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 226 ---~~~~~fD~Vi~~~~l~-----------~~~~~d~~~~-----------l~~~~r~LkpGG~lii~ 268 (277)
..-+++|+++.+-.+. .++.+++... .+.+...|+.+|.+++.
T Consensus 77 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~i 144 (260)
T PRK06997 77 SLGQHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTL 144 (260)
T ss_pred HHHHHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEE
Confidence 0125789988664332 2333444433 45666677777776664
No 464
>PRK06484 short chain dehydrogenase; Validated
Probab=60.40 E-value=82 Score=29.80 Aligned_cols=101 Identities=17% Similarity=0.101 Sum_probs=58.8
Q ss_pred CCccEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----C--
Q 023787 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P-- 226 (277)
Q Consensus 157 ~~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-- 226 (277)
.+..+|-.|++.|. ++..|++++. +|+.++.++.-++...+... ....++.+|+.+.. +
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----------~~~~~~~~D~~~~~~~~~~~~~ 336 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEALG----------DEHLSVQADITDEAAVESAFAQ 336 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC----------CceeEEEccCCCHHHHHHHHHH
Confidence 45678877776652 3444454555 59999998877776655442 12445667776542 1
Q ss_pred ---CCCceeEEecchhh-------hcCChhhHHH-----------HHHHHHhcCCCCcEEEEE
Q 023787 227 ---ETGRYDVIWVQWCI-------GHLTDDDFVS-----------FFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 227 ---~~~~fD~Vi~~~~l-------~~~~~~d~~~-----------~l~~~~r~LkpGG~lii~ 268 (277)
.-+.+|+++.+-.. ...+.+++.. +.+.+...++.+|.+++.
T Consensus 337 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~i 399 (520)
T PRK06484 337 IQARWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNL 399 (520)
T ss_pred HHHHcCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEE
Confidence 11568999865432 1222223222 245555666778888775
No 465
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=60.30 E-value=77 Score=27.25 Aligned_cols=97 Identities=20% Similarity=0.264 Sum_probs=51.2
Q ss_pred CCCCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023787 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (277)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (277)
..++.+|+-.|| +.|..+..+++....++++++.+ ...+.+++ +.... -+.....+........+.+|
T Consensus 141 ~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-~~~~~~~~-~g~~~--------~~~~~~~~~~~~~~~~~~~d 210 (319)
T cd08267 141 VKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST-RNAELVRS-LGADE--------VIDYTTEDFVALTAGGEKYD 210 (319)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-HHHHHHHH-cCCCE--------eecCCCCCcchhccCCCCCc
Confidence 346789999997 46777777776655578888754 55565533 22110 00000011100011234689
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|+.+..- ........+. .|+++|.++..
T Consensus 211 ~vi~~~~~------~~~~~~~~~~-~l~~~g~~i~~ 239 (319)
T cd08267 211 VIFDAVGN------SPFSLYRASL-ALKPGGRYVSV 239 (319)
T ss_pred EEEECCCc------hHHHHHHhhh-ccCCCCEEEEe
Confidence 99854321 1112223233 39999999865
No 466
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=60.20 E-value=1e+02 Score=27.12 Aligned_cols=92 Identities=20% Similarity=0.113 Sum_probs=53.5
Q ss_pred CCCCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC---C-CCCC
Q 023787 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD---F-TPET 228 (277)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~---~-~~~~ 228 (277)
..++.+||-.|+ +.|..+..+++....++++++.+. ..+.+++ +.. . .+....-.. . ....
T Consensus 175 ~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~-~g~----------~-~~~~~~~~~~~~~~~~~~ 241 (350)
T cd08274 175 VGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRA-LGA----------D-TVILRDAPLLADAKALGG 241 (350)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHh-cCC----------e-EEEeCCCccHHHHHhhCC
Confidence 456789999987 466676666766555688887554 5555543 211 0 111110000 0 0122
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
..+|+|+.+.. . ..+..+.+.|+++|.++..
T Consensus 242 ~~~d~vi~~~g-------~--~~~~~~~~~l~~~G~~v~~ 272 (350)
T cd08274 242 EPVDVVADVVG-------G--PLFPDLLRLLRPGGRYVTA 272 (350)
T ss_pred CCCcEEEecCC-------H--HHHHHHHHHhccCCEEEEe
Confidence 46898885433 1 2566778899999998864
No 467
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=60.07 E-value=1e+02 Score=27.03 Aligned_cols=95 Identities=18% Similarity=0.179 Sum_probs=57.8
Q ss_pred CCCCccEEEeecc--ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCC----CCCCCCC
Q 023787 155 NNQHLVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPET 228 (277)
Q Consensus 155 ~~~~~~VLDiGcG--tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~ 228 (277)
..++.+||=.|+| .|..+..+++....+++.+..++.-.+.+++ +... .-+.....+. ... .+.
T Consensus 163 ~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~~--------~v~~~~~~~~~~~~~~~-~~~ 232 (341)
T cd08297 163 LKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKE-LGAD--------AFVDFKKSDDVEAVKEL-TGG 232 (341)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-cCCc--------EEEcCCCccHHHHHHHH-hcC
Confidence 4567788888875 6777777777766679999999877776643 3210 0011111011 001 112
Q ss_pred CceeEEec-chhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 229 GRYDVIWV-QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 229 ~~fD~Vi~-~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
..+|+|+. ... . ..+..+.+.|+++|+++..
T Consensus 233 ~~vd~vl~~~~~-------~--~~~~~~~~~l~~~g~~v~~ 264 (341)
T cd08297 233 GGAHAVVVTAVS-------A--AAYEQALDYLRPGGTLVCV 264 (341)
T ss_pred CCCCEEEEcCCc-------h--HHHHHHHHHhhcCCEEEEe
Confidence 46898884 322 1 3567778889999999875
No 468
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=60.04 E-value=96 Score=28.75 Aligned_cols=89 Identities=11% Similarity=0.014 Sum_probs=50.9
Q ss_pred cEEEeeccccHHHHHHHHh---CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----CCCCcee
Q 023787 160 VALDCGSGIGRITKNLLIR---YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (277)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~---~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD 232 (277)
+|+=+|| |.++..++.. ....|+++|.++.-++.+++.. .+.++.+|..+.. ..-..+|
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~------------~~~~~~gd~~~~~~l~~~~~~~a~ 67 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL------------DVRTVVGNGSSPDVLREAGAEDAD 67 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc------------CEEEEEeCCCCHHHHHHcCCCcCC
Confidence 4666776 5565555543 2236999999998888776522 2455666665431 1124688
Q ss_pred EEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 233 ~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
.|++... +++....+....+.+.|.-.+++
T Consensus 68 ~vi~~~~-----~~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 68 LLIAVTD-----SDETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred EEEEecC-----ChHHHHHHHHHHHHhcCCCeEEE
Confidence 8776543 12333445555566645544444
No 469
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=60.00 E-value=11 Score=29.90 Aligned_cols=89 Identities=18% Similarity=0.159 Sum_probs=48.4
Q ss_pred cEEEeeccc--cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEecc
Q 023787 160 VALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (277)
Q Consensus 160 ~VLDiGcGt--G~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~~ 237 (277)
+|-=||+|. ..++..|++.++ .|++.|.+++-.+...+.- +. ...+..+.. ...|+|+++
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~g-------------~~-~~~s~~e~~---~~~dvvi~~ 64 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEAG-------------AE-VADSPAEAA---EQADVVILC 64 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHTT-------------EE-EESSHHHHH---HHBSEEEE-
T ss_pred EEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHhh-------------hh-hhhhhhhHh---hcccceEee
Confidence 455677763 234444555566 4999999988777665531 11 122222211 245888765
Q ss_pred hhhhcCChhhHHHHHHH--HHhcCCCCcEEEEEec
Q 023787 238 WCIGHLTDDDFVSFFKR--AKVGLKPGGFFVLKEN 270 (277)
Q Consensus 238 ~~l~~~~~~d~~~~l~~--~~r~LkpGG~lii~e~ 270 (277)
-.- ++....++.. +...|++|.+++-.-+
T Consensus 65 v~~----~~~v~~v~~~~~i~~~l~~g~iiid~sT 95 (163)
T PF03446_consen 65 VPD----DDAVEAVLFGENILAGLRPGKIIIDMST 95 (163)
T ss_dssp SSS----HHHHHHHHHCTTHGGGS-TTEEEEE-SS
T ss_pred ccc----chhhhhhhhhhHHhhccccceEEEecCC
Confidence 441 2345677777 7888888877765433
No 470
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=59.92 E-value=52 Score=28.58 Aligned_cols=87 Identities=11% Similarity=0.098 Sum_probs=50.6
Q ss_pred ccEEEeeccc--cHHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 159 LVALDCGSGI--GRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 159 ~~VLDiGcGt--G~~s~~l~~~~~---~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
.+|.=||||. +.++..+.+.+. .+|++.|.++.-++.+.+... +. ...+..+.. ...|+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g------------~~-~~~~~~e~~---~~aDi 66 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYG------------IT-ITTNNNEVA---NSADI 66 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcC------------cE-EeCCcHHHH---hhCCE
Confidence 3678889884 234444444442 269999999877776654321 11 112222211 24588
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEE
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (277)
|+.+-- +.++..+++++...++++ .+++
T Consensus 67 IiLavk-----P~~~~~vl~~l~~~~~~~-~lvI 94 (272)
T PRK12491 67 LILSIK-----PDLYSSVINQIKDQIKND-VIVV 94 (272)
T ss_pred EEEEeC-----hHHHHHHHHHHHHhhcCC-cEEE
Confidence 876544 346667888888877765 4444
No 471
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=59.82 E-value=41 Score=31.26 Aligned_cols=69 Identities=17% Similarity=0.216 Sum_probs=40.8
Q ss_pred CCccEEEeecc-ccHH-HHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 157 QHLVALDCGSG-IGRI-TKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 157 ~~~~VLDiGcG-tG~~-s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
.+.+||=||.| .|.. +.+|..+++..++.+.-+. +.|++.....+ .....+.++..--..+|+|
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~---erA~~La~~~~-----------~~~~~l~el~~~l~~~DvV 242 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTL---ERAEELAKKLG-----------AEAVALEELLEALAEADVV 242 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCH---HHHHHHHHHhC-----------CeeecHHHHHHhhhhCCEE
Confidence 56889999999 6654 4556666667788887654 44443332211 1223333332222579999
Q ss_pred ecchh
Q 023787 235 WVQWC 239 (277)
Q Consensus 235 i~~~~ 239 (277)
|++-.
T Consensus 243 issTs 247 (414)
T COG0373 243 ISSTS 247 (414)
T ss_pred EEecC
Confidence 98753
No 472
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=59.74 E-value=91 Score=28.71 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=27.1
Q ss_pred cEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 023787 160 VALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (277)
Q Consensus 160 ~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~ 199 (277)
+|-=+|.| -|.-...++..++ +|+++|+++.-++.+++.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~G~-~VigvD~d~~kv~~l~~g 41 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQNH-EVVALDILPSRVAMLNDR 41 (388)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-cEEEEECCHHHHHHHHcC
Confidence 45567777 4544444444555 599999999999888764
No 473
>PRK06139 short chain dehydrogenase; Provisional
Probab=59.73 E-value=34 Score=30.62 Aligned_cols=75 Identities=17% Similarity=0.046 Sum_probs=46.0
Q ss_pred CCccEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----C--
Q 023787 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P-- 226 (277)
Q Consensus 157 ~~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-- 226 (277)
.+.+||=.|++.|. ++..+++++. +|+.++-++.-++...+.+... ...+.++.+|+.+.. .
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~-------g~~~~~~~~Dv~d~~~v~~~~~~ 77 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRAL-------GAEVLVVPTDVTDADQVKALATQ 77 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhc-------CCcEEEEEeeCCCHHHHHHHHHH
Confidence 34678888875442 3333444555 5999999988877666655432 234566777876532 0
Q ss_pred ---CCCceeEEecchh
Q 023787 227 ---ETGRYDVIWVQWC 239 (277)
Q Consensus 227 ---~~~~fD~Vi~~~~ 239 (277)
..+.+|++|.+-.
T Consensus 78 ~~~~~g~iD~lVnnAG 93 (330)
T PRK06139 78 AASFGGRIDVWVNNVG 93 (330)
T ss_pred HHHhcCCCCEEEECCC
Confidence 0157899886643
No 474
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=59.67 E-value=91 Score=27.64 Aligned_cols=100 Identities=10% Similarity=0.057 Sum_probs=52.8
Q ss_pred cEEEeeccc-cH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCC-CCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 160 VALDCGSGI-GR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPEN-HMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 160 ~VLDiGcGt-G~-~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
+|.=||||. |. ++..|.+.+. +|+.++.+++.++..++...... +.......++.+. .+..+. . .+.+|+|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~-~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~~~-~-~~~~Dliii 77 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKI-SVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-SAIDEV-L-SDNATCIIL 77 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-CCHHHH-H-hCCCCEEEE
Confidence 477889884 33 4444444444 59999998877776655321110 0000001112221 121111 0 135788775
Q ss_pred chhhhcCChhhHHHHHHHHHh-cCCCCcEEEEE
Q 023787 237 QWCIGHLTDDDFVSFFKRAKV-GLKPGGFFVLK 268 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r-~LkpGG~lii~ 268 (277)
.-- ..++..+++.+.. .++++..+++.
T Consensus 78 avk-----s~~~~~~l~~l~~~~l~~~~~vv~~ 105 (326)
T PRK14620 78 AVP-----TQQLRTICQQLQDCHLKKNTPILIC 105 (326)
T ss_pred EeC-----HHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 533 3356678888887 88888766554
No 475
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=59.62 E-value=1e+02 Score=26.40 Aligned_cols=93 Identities=16% Similarity=0.128 Sum_probs=58.1
Q ss_pred CCCCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcC----CCCCCCCC
Q 023787 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP----LQDFTPET 228 (277)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d----~~~~~~~~ 228 (277)
..++.+||=.|+ +.|..+..+++....+|+++..++.-.+.+++ +... .+-....+ +.. . .
T Consensus 140 ~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~~---------~~~~~~~~~~~~i~~--~-~ 206 (320)
T cd08243 140 LQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKE-LGAD---------EVVIDDGAIAEQLRA--A-P 206 (320)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-cCCc---------EEEecCccHHHHHHH--h-C
Confidence 345678888885 57778777777655579999989887777744 2110 00000001 111 1 2
Q ss_pred CceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 229 ~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
..+|+|+.+.. . ..+..+.+.|+++|+++..-
T Consensus 207 ~~~d~vl~~~~-------~--~~~~~~~~~l~~~g~~v~~g 238 (320)
T cd08243 207 GGFDKVLELVG-------T--ATLKDSLRHLRPGGIVCMTG 238 (320)
T ss_pred CCceEEEECCC-------h--HHHHHHHHHhccCCEEEEEc
Confidence 46898885432 2 35677788999999998753
No 476
>PRK07806 short chain dehydrogenase; Provisional
Probab=59.51 E-value=56 Score=27.23 Aligned_cols=104 Identities=16% Similarity=0.039 Sum_probs=53.1
Q ss_pred CCccEEEeecccc--H-HHHHHHHhCCCcEEEEeCCH-HHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC-----C
Q 023787 157 QHLVALDCGSGIG--R-ITKNLLIRYFNEVDLLEPVS-HFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-----E 227 (277)
Q Consensus 157 ~~~~VLDiGcGtG--~-~s~~l~~~~~~~v~gvD~S~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~ 227 (277)
.+.++|-.|+..| . ++..+++.+. +|++++-+. ...+.....+... ..++.++.+|+.+... .
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~-------~~~~~~~~~D~~~~~~~~~~~~ 76 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAA-------GGRASAVGADLTDEESVAALMD 76 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhc-------CCceEEEEcCCCCHHHHHHHHH
Confidence 3467888886433 2 2333344454 588876643 2333333333221 1245677788776420 0
Q ss_pred -----CCceeEEecchhhhcCCh-----------hhHHHHHHHHHhcCCCCcEEEEE
Q 023787 228 -----TGRYDVIWVQWCIGHLTD-----------DDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 228 -----~~~fD~Vi~~~~l~~~~~-----------~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
-+..|+|+.+........ .-...+++.+...++.+|.+++.
T Consensus 77 ~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 77 TAREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred HHHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 135788775443211100 01335677777777767766654
No 477
>PRK07680 late competence protein ComER; Validated
Probab=59.42 E-value=48 Score=28.61 Aligned_cols=87 Identities=10% Similarity=0.097 Sum_probs=50.4
Q ss_pred cEEEeeccc--cHHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023787 160 VALDCGSGI--GRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (277)
Q Consensus 160 ~VLDiGcGt--G~~s~~l~~~~~---~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~V 234 (277)
+|.=||||. +.++..+.+.+. ..++++|.++.-.+...++... +.. ..+..+.. ...|+|
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g-----------~~~-~~~~~~~~---~~aDiV 66 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPG-----------IHV-AKTIEEVI---SQSDLI 66 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCC-----------eEE-ECCHHHHH---HhCCEE
Confidence 466788875 334555555542 3689999998776655443211 211 12222111 356888
Q ss_pred ecchhhhcCChhhHHHHHHHHHhcCCCCcEEE
Q 023787 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (277)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (277)
+..- ++.+...+++.+...++++..++
T Consensus 67 ilav-----~p~~~~~vl~~l~~~l~~~~~ii 93 (273)
T PRK07680 67 FICV-----KPLDIYPLLQKLAPHLTDEHCLV 93 (273)
T ss_pred EEec-----CHHHHHHHHHHHHhhcCCCCEEE
Confidence 7554 24456678888888888876544
No 478
>PLN00203 glutamyl-tRNA reductase
Probab=59.32 E-value=40 Score=32.40 Aligned_cols=44 Identities=20% Similarity=0.310 Sum_probs=28.7
Q ss_pred CCccEEEeeccc-cH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHh
Q 023787 157 QHLVALDCGSGI-GR-ITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (277)
Q Consensus 157 ~~~~VLDiGcGt-G~-~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~ 200 (277)
.+.+|+=||+|. |. ....+...+..+|+.++.++.-.+...+.+
T Consensus 265 ~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~ 310 (519)
T PLN00203 265 ASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEF 310 (519)
T ss_pred CCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Confidence 367899999963 22 223333345557999999987776665554
No 479
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=59.11 E-value=1.1e+02 Score=26.28 Aligned_cols=102 Identities=12% Similarity=0.054 Sum_probs=55.4
Q ss_pred CccEEEeecc----ccH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023787 158 HLVALDCGSG----IGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (277)
Q Consensus 158 ~~~VLDiGcG----tG~-~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (277)
++.+|=.|++ .|. .+..+++.+. +|+.++.+....+.+++.....+ .. .++.+|+.+..
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~-------~~-~~~~~Dv~d~~~v~~~~~ 75 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQELG-------SD-YVYELDVSKPEHFKSLAE 75 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcC-------Cc-eEEEecCCCHHHHHHHHH
Confidence 4688888974 443 3444455555 58888887532222222222111 11 45677887653
Q ss_pred ---CCCCceeEEecchhhh----------cCChhhHHH-----------HHHHHHhcCCCCcEEEEE
Q 023787 226 ---PETGRYDVIWVQWCIG----------HLTDDDFVS-----------FFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 226 ---~~~~~fD~Vi~~~~l~----------~~~~~d~~~-----------~l~~~~r~LkpGG~lii~ 268 (277)
-.-+++|+++.+-.+. ..+.+++.. +.+.+...++.+|.+++.
T Consensus 76 ~i~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~i 142 (274)
T PRK08415 76 SLKKDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTL 142 (274)
T ss_pred HHHHHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEE
Confidence 0125789988665432 123333322 345666677777877765
No 480
>PRK06128 oxidoreductase; Provisional
Probab=58.85 E-value=93 Score=27.05 Aligned_cols=103 Identities=17% Similarity=0.077 Sum_probs=54.4
Q ss_pred CccEEEeeccccH---HHHHHHHhCCCcEEEEeCCHH--HHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----C-
Q 023787 158 HLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSH--FLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P- 226 (277)
Q Consensus 158 ~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~--~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~- 226 (277)
+.+||-.|++.|. ++..|++.+. +|+.+..+.. ..+...+.+... ..++.++.+|+.+.. +
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~v~~~~~ 126 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAE-------GRKAVALPGDLKDEAFCRQLVE 126 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHc-------CCeEEEEecCCCCHHHHHHHHH
Confidence 4678888865442 3333444455 4776655432 222222222221 234667778887642 0
Q ss_pred ----CCCceeEEecchhhh-------cCChhhHH-----------HHHHHHHhcCCCCcEEEEE
Q 023787 227 ----ETGRYDVIWVQWCIG-------HLTDDDFV-----------SFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 227 ----~~~~fD~Vi~~~~l~-------~~~~~d~~-----------~~l~~~~r~LkpGG~lii~ 268 (277)
.-+..|++|.+.... .++.+++. .+++.+...++++|.+++.
T Consensus 127 ~~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 127 RAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred HHHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence 013689988665432 12222222 3456666777888888775
No 481
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=58.61 E-value=11 Score=30.45 Aligned_cols=38 Identities=18% Similarity=0.045 Sum_probs=27.2
Q ss_pred CCccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHH
Q 023787 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLD 194 (277)
Q Consensus 157 ~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~ 194 (277)
.+.+|.=+|+| .|......++.+..+|.++|.+.....
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~ 73 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE 73 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh
Confidence 46799999998 455555555555558999999987655
No 482
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=58.52 E-value=1e+02 Score=26.43 Aligned_cols=103 Identities=17% Similarity=0.122 Sum_probs=54.5
Q ss_pred CCccEEEeeccc----cH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC------
Q 023787 157 QHLVALDCGSGI----GR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------ 225 (277)
Q Consensus 157 ~~~~VLDiGcGt----G~-~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------ 225 (277)
++..+|-.|++. |. .+..|++.+. +|+.++-+....+..++.....+ . ..++.+|+.+..
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~g-------~-~~~~~~Dv~d~~~v~~~~ 76 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALGKRVKPLAESLG-------S-DFVLPCDVEDIASVDAVF 76 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHHHHHHHHHHhcC-------C-ceEEeCCCCCHHHHHHHH
Confidence 346788888754 33 4444555555 58888776543333332222111 1 235677877642
Q ss_pred ----CCCCceeEEecchhhh----------cCChhhHHH-----------HHHHHHhcCCCCcEEEEE
Q 023787 226 ----PETGRYDVIWVQWCIG----------HLTDDDFVS-----------FFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 226 ----~~~~~fD~Vi~~~~l~----------~~~~~d~~~-----------~l~~~~r~LkpGG~lii~ 268 (277)
-.-++.|+++.+-.+. .++.+++.. +.+.+...|+.+|.++..
T Consensus 77 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~i 144 (271)
T PRK06505 77 EALEKKWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTL 144 (271)
T ss_pred HHHHHHhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEE
Confidence 0125789988665432 223333333 234455666667877654
No 483
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=58.46 E-value=6.5 Score=35.45 Aligned_cols=109 Identities=11% Similarity=0.018 Sum_probs=71.7
Q ss_pred CCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHH-------HHHhCCCCCCCCCCCcceeEEEcCCCCCCC-
Q 023787 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAA-------RESLAPENHMAPDMHKATNFFCVPLQDFTP- 226 (277)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a-------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~- 226 (277)
..++.-|.|==.|||.+....+ ++..-|.|.||+-.|+... +.+++.-|.. ..-++...+|...-++
T Consensus 206 v~pGdivyDPFVGTGslLvsaa-~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~----~~fldvl~~D~sn~~~r 280 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAA-HFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS----SQFLDVLTADFSNPPLR 280 (421)
T ss_pred cCCCCEEecCccccCceeeehh-hhcceeeccccchheeecccCCCcchhHhHHHhCCc----chhhheeeecccCcchh
Confidence 5688899999999999988665 4444699999998887732 2333332211 1235566677777653
Q ss_pred CCCceeEEecchh------------------------hhcCCh-------hhHHHHHHHHHhcCCCCcEEEEE
Q 023787 227 ETGRYDVIWVQWC------------------------IGHLTD-------DDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 227 ~~~~fD~Vi~~~~------------------------l~~~~~-------~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
....||.|+|-.. ..|.|. .-+...|.-.++.|..||++++-
T Consensus 281 sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w 353 (421)
T KOG2671|consen 281 SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFW 353 (421)
T ss_pred hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEe
Confidence 2468999995421 112221 11345677788999999999874
No 484
>PRK06125 short chain dehydrogenase; Provisional
Probab=58.26 E-value=63 Score=27.23 Aligned_cols=75 Identities=15% Similarity=0.122 Sum_probs=45.2
Q ss_pred CccEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----C-CC
Q 023787 158 HLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P-ET 228 (277)
Q Consensus 158 ~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-~~ 228 (277)
+.++|=.|++.|. ++..+++.+. +|++++.++..++...+.+.... ..++.++.+|+.+.. . .-
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~~D~~~~~~~~~~~~~~ 79 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAH------GVDVAVHALDLSSPEAREQLAAEA 79 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhc------CCceEEEEecCCCHHHHHHHHHHh
Confidence 4678888875442 2333444555 69999998887776655543211 134667778876532 0 12
Q ss_pred CceeEEecchh
Q 023787 229 GRYDVIWVQWC 239 (277)
Q Consensus 229 ~~fD~Vi~~~~ 239 (277)
++.|+++.+..
T Consensus 80 g~id~lv~~ag 90 (259)
T PRK06125 80 GDIDILVNNAG 90 (259)
T ss_pred CCCCEEEECCC
Confidence 46888886543
No 485
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=56.53 E-value=93 Score=27.54 Aligned_cols=101 Identities=16% Similarity=0.180 Sum_probs=51.0
Q ss_pred cEEEeeccc-cHHHHHH-HHhCC-CcEEEEeCCHHHHH-HHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 160 VALDCGSGI-GRITKNL-LIRYF-NEVDLLEPVSHFLD-AARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 160 ~VLDiGcGt-G~~s~~l-~~~~~-~~v~gvD~S~~~l~-~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
+|.=||+|. |...... +..+. .++..+|.++...+ .+......... .........|.+++ ...|+|+
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~-----~~~~~i~~~d~~~l----~~aDiVi 72 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPF-----VKPVRIYAGDYADC----KGADVVV 72 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccc-----cCCeEEeeCCHHHh----CCCCEEE
Confidence 577899985 4433333 33342 47999999876654 33332221111 11122233343332 3468887
Q ss_pred cchhhhcCChh-----------hHHHHHHHHHhcCCCCcEEEEEec
Q 023787 236 VQWCIGHLTDD-----------DFVSFFKRAKVGLKPGGFFVLKEN 270 (277)
Q Consensus 236 ~~~~l~~~~~~-----------d~~~~l~~~~r~LkpGG~lii~e~ 270 (277)
.......-+.. -+..+.+++.+ ..|.|++++.-|
T Consensus 73 ita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~-~~~~giiiv~tN 117 (308)
T cd05292 73 ITAGANQKPGETRLDLLKRNVAIFKEIIPQILK-YAPDAILLVVTN 117 (308)
T ss_pred EccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecC
Confidence 65443222111 13445555555 458899888744
No 486
>PRK05875 short chain dehydrogenase; Provisional
Probab=56.39 E-value=98 Score=26.28 Aligned_cols=75 Identities=19% Similarity=0.144 Sum_probs=42.7
Q ss_pred CccEEEeecccc--H-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----CC--
Q 023787 158 HLVALDCGSGIG--R-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE-- 227 (277)
Q Consensus 158 ~~~VLDiGcGtG--~-~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~-- 227 (277)
+.++|-.|++.| . ++..+++++. +|++++-++...+...+.+...+. ..++.++.+|+.+.. +.
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRNPDKLAAAAEEIEALKG-----AGAVRYEPADVTDEDQVARAVDAA 80 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhccC-----CCceEEEEcCCCCHHHHHHHHHHH
Confidence 468888886433 2 2233344455 599999887666554444332110 134677778887642 01
Q ss_pred ---CCceeEEecch
Q 023787 228 ---TGRYDVIWVQW 238 (277)
Q Consensus 228 ---~~~fD~Vi~~~ 238 (277)
.+..|+|+.+.
T Consensus 81 ~~~~~~~d~li~~a 94 (276)
T PRK05875 81 TAWHGRLHGVVHCA 94 (276)
T ss_pred HHHcCCCCEEEECC
Confidence 13678888654
No 487
>PRK08655 prephenate dehydrogenase; Provisional
Probab=55.95 E-value=39 Score=31.63 Aligned_cols=85 Identities=16% Similarity=0.169 Sum_probs=45.4
Q ss_pred cEEEee-cc-ccH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEec
Q 023787 160 VALDCG-SG-IGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (277)
Q Consensus 160 ~VLDiG-cG-tG~-~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi~ 236 (277)
+|.=+| +| .|. ++..+...+. +|+++|.++........... +.+ ..+..+. -...|+|+.
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~~~~~~~~a~~~g------------v~~-~~~~~e~---~~~aDvVIl 64 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGRDPKKGKEVAKELG------------VEY-ANDNIDA---AKDADIVII 64 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHcC------------Cee-ccCHHHH---hccCCEEEE
Confidence 567787 45 443 3444443344 59999998766432222211 111 1111111 134688887
Q ss_pred chhhhcCChhhHHHHHHHHHhcCCCCcEEE
Q 023787 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (277)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (277)
+-... ....++.++...++||..++
T Consensus 65 avp~~-----~~~~vl~~l~~~l~~~~iVi 89 (437)
T PRK08655 65 SVPIN-----VTEDVIKEVAPHVKEGSLLM 89 (437)
T ss_pred ecCHH-----HHHHHHHHHHhhCCCCCEEE
Confidence 65543 33467778877888877544
No 488
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=55.72 E-value=6.6 Score=32.40 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.2
Q ss_pred hHHHHHHHHHhcCCCCcEEEEE
Q 023787 247 DFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 247 d~~~~l~~~~r~LkpGG~lii~ 268 (277)
-+..++.++.|+|||||.+++.
T Consensus 34 ~~~~~~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 34 WMEEWLKECYRVLKPGGSIFIF 55 (231)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHhhcCCCeeEEEE
Confidence 3568999999999999998875
No 489
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=55.65 E-value=77 Score=27.96 Aligned_cols=96 Identities=18% Similarity=0.101 Sum_probs=53.9
Q ss_pred CCCCccEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023787 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (277)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (277)
..++.+||=.||| .|..+..+++....++++++.++...+.+++ +... .-+.....+... ...+.+|+
T Consensus 167 ~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~-~g~~--------~vi~~~~~~~~~--~~~~~~d~ 235 (337)
T cd05283 167 VGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALK-LGAD--------EFIATKDPEAMK--KAAGSLDL 235 (337)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-cCCc--------EEecCcchhhhh--hccCCceE
Confidence 3456677777763 4555555555544479999999888888754 2211 000000001100 01246898
Q ss_pred EecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 234 Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
|+.+..- . ..+..+.+.|+++|.++...
T Consensus 236 v~~~~g~------~--~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 236 IIDTVSA------S--HDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred EEECCCC------c--chHHHHHHHhcCCCEEEEEe
Confidence 8843321 1 24566778889999988753
No 490
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=55.64 E-value=39 Score=33.86 Aligned_cols=101 Identities=12% Similarity=0.075 Sum_probs=59.7
Q ss_pred CCccEEEeecccc--HHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCC-------C-CCCCCCC---cceeEEEcCCCC
Q 023787 157 QHLVALDCGSGIG--RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE-------N-HMAPDMH---KATNFFCVPLQD 223 (277)
Q Consensus 157 ~~~~VLDiGcGtG--~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~-------~-~~~~~~~---~~~~~~~~d~~~ 223 (277)
+-.+|.-||+|+= .++..++..+.. |+.+|.+++.++.+++++... + +...... .++.+. .++..
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~ 389 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTP-IVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYAG 389 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCe-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH
Confidence 4568999999953 344445556664 999999999999877655321 1 1000000 112221 22222
Q ss_pred CCCCCCceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEE
Q 023787 224 FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (277)
Q Consensus 224 ~~~~~~~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (277)
+ ...|+|+=+ +++.+. --.++++++.++++|+.+|.
T Consensus 390 ~----~~aDlViEa-v~E~l~--~K~~vf~~l~~~~~~~~ila 425 (714)
T TIGR02437 390 F----DNVDIVVEA-VVENPK--VKAAVLAEVEQHVREDAILA 425 (714)
T ss_pred h----cCCCEEEEc-CcccHH--HHHHHHHHHHhhCCCCcEEE
Confidence 1 357877744 333333 34589999999999997764
No 491
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=55.50 E-value=1.1e+02 Score=27.78 Aligned_cols=44 Identities=16% Similarity=0.042 Sum_probs=32.6
Q ss_pred CCCCccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 023787 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (277)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~ 198 (277)
..++.+||=.|+ +.|..+..+++....++++++.++.-.+.+++
T Consensus 187 ~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~~~~~~~~ 232 (398)
T TIGR01751 187 VKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAEYCRE 232 (398)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 346678999997 56667777776655568888888887777765
No 492
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=55.47 E-value=1.1e+02 Score=26.68 Aligned_cols=95 Identities=15% Similarity=0.134 Sum_probs=54.9
Q ss_pred CccEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEe
Q 023787 158 HLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (277)
Q Consensus 158 ~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Vi 235 (277)
+.+||=.|+ +.|..+..+++....+|+.++.++.-.+.+++ +...... .... .....+..+ ....+|+|+
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~~~v~----~~~~-~~~~~~~~~--~~~~~d~vl 218 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKK-LGAKEVI----PREE-LQEESIKPL--EKQRWAGAV 218 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHH-cCCCEEE----cchh-HHHHHHHhh--ccCCcCEEE
Confidence 468888886 46666666776655579999999888887754 2211000 0000 000011111 124588877
Q ss_pred cchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.... . ..+....+.|+++|+++..-
T Consensus 219 d~~g-------~--~~~~~~~~~l~~~G~~i~~g 243 (326)
T cd08289 219 DPVG-------G--KTLAYLLSTLQYGGSVAVSG 243 (326)
T ss_pred ECCc-------H--HHHHHHHHHhhcCCEEEEEe
Confidence 4322 2 35667788899999998763
No 493
>PRK06500 short chain dehydrogenase; Provisional
Probab=55.37 E-value=1.2e+02 Score=25.10 Aligned_cols=70 Identities=21% Similarity=0.241 Sum_probs=40.1
Q ss_pred CccEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCCC--------
Q 023787 158 HLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-------- 226 (277)
Q Consensus 158 ~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------- 226 (277)
+.++|=.|++.|. ++..+++++. +|++++.++..++...+.+. .++.++.+|+.+...
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~----------~~~~~~~~D~~~~~~~~~~~~~~ 74 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAELG----------ESALVIRADAGDVAAQKALAQAL 74 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHhC----------CceEEEEecCCCHHHHHHHHHHH
Confidence 3567777765432 2333444455 59999988766655544432 235667777765320
Q ss_pred --CCCceeEEecch
Q 023787 227 --ETGRYDVIWVQW 238 (277)
Q Consensus 227 --~~~~fD~Vi~~~ 238 (277)
..+++|+|+.+.
T Consensus 75 ~~~~~~id~vi~~a 88 (249)
T PRK06500 75 AEAFGRLDAVFINA 88 (249)
T ss_pred HHHhCCCCEEEECC
Confidence 114688887544
No 494
>PRK12743 oxidoreductase; Provisional
Probab=55.32 E-value=99 Score=25.96 Aligned_cols=72 Identities=19% Similarity=0.150 Sum_probs=39.4
Q ss_pred ccEEEeeccccHHHHHHH----HhCCCcEEEEe-CCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC-----C--
Q 023787 159 LVALDCGSGIGRITKNLL----IRYFNEVDLLE-PVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P-- 226 (277)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~----~~~~~~v~gvD-~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-- 226 (277)
.+||=.|++.| ++..++ +.+. +|..+. .+....+.+.+.+... ..++.++.+|+.+.. .
T Consensus 3 k~vlItGas~g-iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~ 73 (256)
T PRK12743 3 QVAIVTASDSG-IGKACALLLAQQGF-DIGITWHSDEEGAKETAEEVRSH-------GVRAEIRQLDLSDLPEGAQALDK 73 (256)
T ss_pred CEEEEECCCch-HHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhc-------CCceEEEEccCCCHHHHHHHHHH
Confidence 46888887544 333343 3444 476664 3444444444433221 235777888887642 0
Q ss_pred ---CCCceeEEecchh
Q 023787 227 ---ETGRYDVIWVQWC 239 (277)
Q Consensus 227 ---~~~~fD~Vi~~~~ 239 (277)
.-++.|.|+.+..
T Consensus 74 ~~~~~~~id~li~~ag 89 (256)
T PRK12743 74 LIQRLGRIDVLVNNAG 89 (256)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1146898886543
No 495
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=55.14 E-value=1.3e+02 Score=25.42 Aligned_cols=101 Identities=14% Similarity=-0.010 Sum_probs=54.9
Q ss_pred CCccEEEeecc-ccHHHH----HHHHhCCCcEEEEeCCH--HHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC----
Q 023787 157 QHLVALDCGSG-IGRITK----NLLIRYFNEVDLLEPVS--HFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---- 225 (277)
Q Consensus 157 ~~~~VLDiGcG-tG~~s~----~l~~~~~~~v~gvD~S~--~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 225 (277)
.+.++|-.|+| ++.++. .+++.+. +|+.++.+. ..++...+.+. .++.++.+|+.+..
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~----------~~~~~~~~Dv~~~~~i~~ 74 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGA-EVVLTGFGRALRLTERIAKRLP----------EPAPVLELDVTNEEHLAS 74 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCC-EEEEecCccchhHHHHHHHhcC----------CCCcEEeCCCCCHHHHHH
Confidence 34688999983 333333 3343454 588887653 34444433321 13456777877642
Q ss_pred ------CCCCceeEEecchhhhc-------C---ChhhHH-----------HHHHHHHhcCCCCcEEEEE
Q 023787 226 ------PETGRYDVIWVQWCIGH-------L---TDDDFV-----------SFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 226 ------~~~~~fD~Vi~~~~l~~-------~---~~~d~~-----------~~l~~~~r~LkpGG~lii~ 268 (277)
..-+.+|+++.+..+.. + +.+++. .+.+.+...++++|.+++.
T Consensus 75 ~~~~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~i 144 (256)
T PRK07889 75 LADRVREHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGL 144 (256)
T ss_pred HHHHHHHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEE
Confidence 01257899887654321 1 122221 2345566777888877664
No 496
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=55.05 E-value=1.3e+02 Score=25.46 Aligned_cols=103 Identities=12% Similarity=0.028 Sum_probs=53.3
Q ss_pred CCccEEEeeccc----cH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCCCC------
Q 023787 157 QHLVALDCGSGI----GR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------ 225 (277)
Q Consensus 157 ~~~~VLDiGcGt----G~-~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------ 225 (277)
.+..+|=.|++. |. .+..+++.++ +|+.++-++...+.+++.....+ . ..++.+|+.+..
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~-~v~~~~r~~~~~~~~~~l~~~~g-------~-~~~~~~Dv~~~~~v~~~~ 77 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGA-ELWFTYQSEVLEKRVKPLAEEIG-------C-NFVSELDVTNPKSISNLF 77 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCC-EEEEEeCchHHHHHHHHHHHhcC-------C-ceEEEccCCCHHHHHHHH
Confidence 346788888854 43 3445555566 48888776432222322222111 1 124567776642
Q ss_pred ----CCCCceeEEecchhhh----------cCChhhHHHHH-----------HHHHhcCCCCcEEEEE
Q 023787 226 ----PETGRYDVIWVQWCIG----------HLTDDDFVSFF-----------KRAKVGLKPGGFFVLK 268 (277)
Q Consensus 226 ----~~~~~fD~Vi~~~~l~----------~~~~~d~~~~l-----------~~~~r~LkpGG~lii~ 268 (277)
..-+++|+++.+.... .++.+++...+ +.+...++.+|.+++.
T Consensus 78 ~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~i 145 (260)
T PRK06603 78 DDIKEKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTL 145 (260)
T ss_pred HHHHHHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEE
Confidence 1125789888654332 22333333332 3344566778887765
No 497
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=54.70 E-value=18 Score=31.97 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=42.6
Q ss_pred eeccccHHHHHHHHh----CCCcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeE----EEcCCCCCC-----CCCCc
Q 023787 164 CGSGIGRITKNLLIR----YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF----FCVPLQDFT-----PETGR 230 (277)
Q Consensus 164 iGcGtG~~s~~l~~~----~~~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~----~~~d~~~~~-----~~~~~ 230 (277)
|-.|+|.++..+.++ .+.+++.+|.++..+-..++.+....- ..++.+ +.+|+.+.. +....
T Consensus 3 VTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~-----~~~v~~~~~~vigDvrd~~~l~~~~~~~~ 77 (293)
T PF02719_consen 3 VTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFP-----DPKVRFEIVPVIGDVRDKERLNRIFEEYK 77 (293)
T ss_dssp EETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC-------TTCEEEEE--CTSCCHHHHHHHHTT--T
T ss_pred EEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhccc-----ccCcccccCceeecccCHHHHHHHHhhcC
Confidence 345778877777665 455899999999999888887731100 123433 366776643 45568
Q ss_pred eeEEecchhhhcCC
Q 023787 231 YDVIWVQWCIGHLT 244 (277)
Q Consensus 231 fD~Vi~~~~l~~~~ 244 (277)
.|+|+-..++-|++
T Consensus 78 pdiVfHaAA~KhVp 91 (293)
T PF02719_consen 78 PDIVFHAAALKHVP 91 (293)
T ss_dssp -SEEEE------HH
T ss_pred CCEEEEChhcCCCC
Confidence 99999888887765
No 498
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=54.58 E-value=52 Score=28.55 Aligned_cols=60 Identities=17% Similarity=0.103 Sum_probs=46.1
Q ss_pred chHHHHHHHHhccCCCcCCCCCccEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhCC
Q 023787 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (277)
Q Consensus 137 ~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~a~~~~~~ 202 (277)
.+...+.+.+... ..++..|||-=+|+|..... +......+.|+|+++..++.+.+++..
T Consensus 207 ~P~~l~~r~i~~~-----s~~~diVlDpf~GsGtt~~a-a~~~~r~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 207 KPLALIERLIRDY-----SFPGDIVLDPFAGSGTTGIA-AKNLGRRFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred ChHHHHHHHHHhc-----CCCCCEEeecCCCCChHHHH-HHHcCCceEEEecCHHHHHHHHHHHHh
Confidence 3445555555432 45788999999999999884 445566799999999999999999865
No 499
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=54.27 E-value=1.5e+02 Score=26.03 Aligned_cols=95 Identities=16% Similarity=0.116 Sum_probs=53.0
Q ss_pred CCCccEEEeecc-ccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEE---cCCCCCCCCCCc
Q 023787 156 NQHLVALDCGSG-IGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC---VPLQDFTPETGR 230 (277)
Q Consensus 156 ~~~~~VLDiGcG-tG~~s~~l~~~~~-~~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~ 230 (277)
.++.+||=.|+| .|..+..+++... .+|++++-++...+.+++. ... .-+.... ..+... .+...
T Consensus 166 ~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~-g~~--------~~~~~~~~~~~~i~~~-~~~~~ 235 (340)
T cd05284 166 DPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERL-GAD--------HVLNASDDVVEEVREL-TGGRG 235 (340)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHh-CCc--------EEEcCCccHHHHHHHH-hCCCC
Confidence 356788888855 3344444555543 4699999888877777542 210 0000000 001111 11236
Q ss_pred eeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023787 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (277)
Q Consensus 231 fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (277)
+|+|+.+-.- ...+..+.+.|+++|+++..
T Consensus 236 ~dvvld~~g~--------~~~~~~~~~~l~~~g~~i~~ 265 (340)
T cd05284 236 ADAVIDFVGS--------DETLALAAKLLAKGGRYVIV 265 (340)
T ss_pred CCEEEEcCCC--------HHHHHHHHHHhhcCCEEEEE
Confidence 8988853221 14567778889999999865
No 500
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=54.15 E-value=1.6e+02 Score=26.08 Aligned_cols=93 Identities=18% Similarity=0.093 Sum_probs=54.5
Q ss_pred CCccEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhCCCCCCCCCCCcceeEEEcCCCC----CC-CCCC
Q 023787 157 QHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD----FT-PETG 229 (277)
Q Consensus 157 ~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~----~~-~~~~ 229 (277)
++.+||-.|+| .|..+..+++.... .|++++.++.-.+.+++ +... .++...-.. +. ...+
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~g~~-----------~~~~~~~~~~~~~~~~~~~~ 242 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA-AGAD-----------VVVNGSDPDAAKRIIKAAGG 242 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-hCCc-----------EEecCCCccHHHHHHHHhCC
Confidence 56788888765 45555556655443 78999999888888754 3210 111110000 00 1112
Q ss_pred ceeEEecchhhhcCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023787 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (277)
Q Consensus 230 ~fD~Vi~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (277)
.+|+|+..... . ..+..+.+.|+++|.++...
T Consensus 243 ~~d~vid~~g~------~--~~~~~~~~~l~~~g~~v~~g 274 (350)
T cd08240 243 GVDAVIDFVNN------S--ATASLAFDILAKGGKLVLVG 274 (350)
T ss_pred CCcEEEECCCC------H--HHHHHHHHHhhcCCeEEEEC
Confidence 58888743320 1 46778888999999998754
Done!