BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023788
(277 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DQN|A Chain A, Crystal Structure Of The Branched-Chain Aminotransferase
From Streptococcus Mutans
Length = 345
Score = 222 bits (565), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 124/282 (43%), Positives = 168/282 (59%), Gaps = 6/282 (2%)
Query: 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGK 60
+KAYR +DG + LFRP+ NA RLQ A+R+ MP D+FIDA KQ AN+ +VPP G
Sbjct: 64 LKAYRTKDGSVQLFRPNMNAERLQRTADRLLMPQVPTDKFIDAAKQVVRANEEYVPPYGT 123
Query: 61 G-SLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGG 119
G +LY+RPLL+G G ++G+ PA EY F +FA PVGNYFK GLAP N ++D++ RA P G
Sbjct: 124 GATLYLRPLLIGVGDVIGVHPADEYIFTIFAMPVGNYFKGGLAPTNFLIQDDYDRAAPHG 183
Query: 120 AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIF-ILKGNIISTPA 178
G K NYA L A R FSDV+YLD +EEV S N F I K N TP
Sbjct: 184 TGAAKVGGNYAASLLPGKVAHERQFSDVIYLDPATHTKIEEVGSANFFGITKDNEFITP- 242
Query: 179 TSGTILAGITRKSIIEIASD-CGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYR 237
S +IL +T+ S++ +A G + E + VDEL + E GTA V++P+G + +
Sbjct: 243 LSPSILPSVTKYSLLYLAEHRFGMKAIEGDVCVDELDKFVEAGACGTAAVISPIGGVQHG 302
Query: 238 GKRIEF--KTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 277
F +T V+ +LY L GIQ G +K +GW +++
Sbjct: 303 DDFHVFYSETEVGPVTHKLYDELTGIQFGDVKAPEGWIYKVD 344
>pdb|3JZ6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom.
pdb|3JZ6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom
Length = 373
Score = 214 bits (544), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 114/289 (39%), Positives = 172/289 (59%), Gaps = 12/289 (4%)
Query: 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPG- 59
+KAYR DG +V FRP+ NA RLQ+ A R+ +P + FI++++Q +++WVPP G
Sbjct: 85 LKAYRWADGSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGG 144
Query: 60 KGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGG 119
+ SLY+RP ++ + P LG+ P+ EY +L+ ASP G YFK G+ P+++++ E+ RA+PGG
Sbjct: 145 EESLYLRPFVIATEPGLGVRPSNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGG 204
Query: 120 AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN----IIS 175
G K NYA L A ++A G V++LD++ ++ +EE+ N+F + G+ +
Sbjct: 205 TGAAKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLV 264
Query: 176 TPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELL------EADEVFCTGTAVVVA 229
TP SG++L GITR S++++A+D GF VEER I VDE E EVF GTA V+
Sbjct: 265 TPELSGSLLPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVIT 324
Query: 230 PVGSITYRGKRIEFKTGAQ-SVSRELYSTLVGIQTGLIKDNKGWTVEIN 277
PV + + G ++ L TL GIQ G D GW +N
Sbjct: 325 PVSHVKHHDGEFTIADGQPGEITMALRDTLTGIQRGTFADTHGWMARLN 373
>pdb|3DTF|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTF|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
Length = 372
Score = 213 bits (543), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 114/289 (39%), Positives = 172/289 (59%), Gaps = 12/289 (4%)
Query: 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPG- 59
+KAYR DG +V FRP+ NA RLQ+ A R+ +P + FI++++Q +++WVPP G
Sbjct: 84 LKAYRWADGSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGG 143
Query: 60 KGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGG 119
+ SLY+RP ++ + P LG+ P+ EY +L+ ASP G YFK G+ P+++++ E+ RA+PGG
Sbjct: 144 EESLYLRPFVIATEPGLGVRPSNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGG 203
Query: 120 AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN----IIS 175
G K NYA L A ++A G V++LD++ ++ +EE+ N+F + G+ +
Sbjct: 204 TGAAKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLV 263
Query: 176 TPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELL------EADEVFCTGTAVVVA 229
TP SG++L GITR S++++A+D GF VEER I VDE E EVF GTA V+
Sbjct: 264 TPELSGSLLPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVIT 323
Query: 230 PVGSITYRGKRIEFKTGAQ-SVSRELYSTLVGIQTGLIKDNKGWTVEIN 277
PV + + G ++ L TL GIQ G D GW +N
Sbjct: 324 PVSHVKHHDGEFTIADGQPGEITMALRDTLTGIQRGTFADTHGWMARLN 372
>pdb|3HT5|A Chain A, Crystal Structure Of Ilve A Branched Chain Amino Acid
Transaminase From Mycobacterium Tuberculosis
Length = 368
Score = 211 bits (538), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 164/289 (56%), Gaps = 12/289 (4%)
Query: 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPG- 59
+KAYR DG +V FR D NA RL++ A R+ +P FI++++Q +K WVP G
Sbjct: 80 LKAYRWADGSIVSFRADANAARLRSSARRLAIPELPDAVFIESLRQLIAVDKAWVPGAGG 139
Query: 60 KGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGG 119
+ +LY+RP + + P LG+ PA +Y +L+ ASP G YFK G+AP++++V E+ RA PGG
Sbjct: 140 EEALYLRPFIFATEPGLGVRPATQYRYLLIASPAGAYFKGGIAPVSVWVSTEYVRACPGG 199
Query: 120 AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN----IIS 175
G K NYA L A + A G V++LD+V ++ +EE+ NIF + G+ +
Sbjct: 200 TGAAKFGGNYAASLLAQAEAAENGCDQVVWLDAVERRYIEEMGGMNIFFVLGSGGSARLV 259
Query: 176 TPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELL------EADEVFCTGTAVVVA 229
TP SG++L GITR S++++A D GF VEER I +DE E EVF GTA V+
Sbjct: 260 TPELSGSLLPGITRDSLLQLAIDAGFAVEERRIDIDEWQKKAAAGEITEVFACGTAAVIT 319
Query: 230 PVGSITYRGKRIEFKTGA-QSVSRELYSTLVGIQTGLIKDNKGWTVEIN 277
PV + + G V+ L TL GIQ G D GW +
Sbjct: 320 PVARVRHGASEFRIADGQPGEVTMALRDTLTGIQRGTFADTHGWMARLG 368
>pdb|3UYY|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UYY|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|C Chain C, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|D Chain D, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZO|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZO|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
Length = 358
Score = 202 bits (513), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/282 (41%), Positives = 161/282 (57%), Gaps = 8/282 (2%)
Query: 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGK 60
+KAYR DG + LFRPDQNA R++ R+ MP S +QFIDA Q AN+ ++PP G
Sbjct: 79 LKAYRCADGSINLFRPDQNAARMRMSCRRLLMPELSDEQFIDACLQVVRANEHFLPPYGT 138
Query: 61 -GSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGG 119
GSLY+RP ++G G +G+ APE+ F VF PVG YFK GL P N ++ ++ RA P G
Sbjct: 139 GGSLYLRPFVIGVGDNIGVRTAPEFIFSVFCVPVGPYFKGGLTPTN-FITSDYDRAAPHG 197
Query: 120 AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFIL--KGNIISTP 177
G K NYA L AK R F+DV+YLD +EE + N F + G TP
Sbjct: 198 TGAAKVGGNYAASLLPGYEAKKRDFADVIYLDPATHTTIEEAGAANFFAITQDGQKFVTP 257
Query: 178 ATSGTILAGITRKSIIEIASD-CGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITY 236
S +IL IT+ S++ +A G +VEE I +DEL + E GTA V+ P+G I +
Sbjct: 258 -QSPSILPSITKYSLLWLAEHRLGLEVEEGDIRIDELGKFSEAGACGTAAVITPIGGIQH 316
Query: 237 RGKRIEFKTGAQ--SVSRELYSTLVGIQTGLIKDNKGWTVEI 276
F + ++ V+R LY LVGIQ G + +GW V++
Sbjct: 317 GDDFHVFYSESEPGPVTRRLYDELVGIQYGDKEAPEGWIVKV 358
>pdb|2COG|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COG|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COI|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COI|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|A Chain A, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|B Chain B, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
Length = 386
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 152/290 (52%), Gaps = 20/290 (6%)
Query: 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGK 60
+KA+R D ++ LF+P+ N R+ A R +P ++ ++ ++Q ++ WVP
Sbjct: 98 LKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTS 157
Query: 61 GSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGG 119
SLYIRP +G+ P LG+ + V SPVG YF G P++L+ ++ RA GG
Sbjct: 158 ASLYIRPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGG 217
Query: 120 AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN-----II 174
G K NY L A A + G VL+L + + + EV + N+F+ N +
Sbjct: 218 TGDCKMGGNYGSSLFAQCEAVDNGCQQVLWLYGEDHQ-ITEVGTMNLFLYWINEDGEEEL 276
Query: 175 STPATSGTILAGITRKSIIEIASDCG-FQVEERAIPVDELLEA------DEVFCTGTAVV 227
+TP G IL G+TR+ I+++A G F+V ER + +D+L A E+F +GTA V
Sbjct: 277 ATPPLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACV 336
Query: 228 VAPVGSITYRGKRIEFKT---GAQSVSRELYSTLVGIQTGLIKDNKGWTV 274
V PV I Y+G+ I T G + SR L S L IQ G ++ + WT+
Sbjct: 337 VCPVSDILYKGETIHIPTMENGPKLASRIL-SKLTDIQYG--REERDWTI 383
>pdb|2ABJ|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|D Chain D, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|G Chain G, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|J Chain J, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate
Length = 366
Score = 150 bits (378), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 150/290 (51%), Gaps = 20/290 (6%)
Query: 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGK 60
+KA+R D ++ LF+P+ N R+ A R +P ++ ++ ++Q ++ WVP
Sbjct: 78 LKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTS 137
Query: 61 GSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGG 119
SLYIRP +G+ P LG+ + V SPVG YF G P++L+ ++ RA GG
Sbjct: 138 ASLYIRPAFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGG 197
Query: 120 AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN-----II 174
G K NY L A + G VL+L + + + EV + N+F+ N +
Sbjct: 198 TGDCKMGGNYGSSLFAQCEDVDNGCQQVLWLYGRDHQ-ITEVGTMNLFLYWINEDGEEEL 256
Query: 175 STPATSGTILAGITRKSIIEIASDCG-FQVEERAIPVDELLEA------DEVFCTGTAVV 227
+TP G IL G+TR+ I+++A G F+V ER + +D+L A E+F +GTA V
Sbjct: 257 ATPPLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFSSGTACV 316
Query: 228 VAPVGSITYRGKRIEFKT---GAQSVSRELYSTLVGIQTGLIKDNKGWTV 274
V PV I Y+G+ I T G + SR L S L IQ G ++ WT+
Sbjct: 317 VCPVSDILYKGETIHIPTMENGPKLASRIL-SKLTDIQYG--REESDWTI 363
>pdb|2HGW|A Chain A, Crystal Structure Of Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HGW|B Chain B, Crystal Structure Of Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/258 (35%), Positives = 138/258 (53%), Gaps = 14/258 (5%)
Query: 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGK 60
MKA++ +D Q+ LFRP N R+ A R+C+PS + ++ +++ +K WVP
Sbjct: 78 MKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAG 137
Query: 61 GSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGG 119
SLY+RP+L+G+ P LG++ V PVG YF G + P++L + F RA GG
Sbjct: 138 TSLYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGG 197
Query: 120 AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN-----II 174
G K NY P + A RG VL+L + + L EV + NIF+ + +
Sbjct: 198 VGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLEL 256
Query: 175 STPATSGTILAGITRKSIIEIASDCG-FQVEERAIPVDELLEA------DEVFCTGTAVV 227
TP +G IL G+ R+S++++A G F+V ER I + +LL A EVF +GTA
Sbjct: 257 VTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQ 316
Query: 228 VAPVGSITYRGKRIEFKT 245
VAPV I Y+ + + T
Sbjct: 317 VAPVHRILYKDRNLHIPT 334
>pdb|2HDK|A Chain A, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HDK|B Chain B, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/258 (35%), Positives = 138/258 (53%), Gaps = 14/258 (5%)
Query: 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGK 60
MKA++ +D Q+ LFRP N R+ A R+C+PS + ++ +++ +K WVP
Sbjct: 78 MKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAG 137
Query: 61 GSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGG 119
SLY+RP+L+G+ P LG++ V PVG YF G + P++L + F RA GG
Sbjct: 138 TSLYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGG 197
Query: 120 AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN-----II 174
G K NY P + A RG VL+L + + L EV + NIF+ + +
Sbjct: 198 VGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLEL 256
Query: 175 STPATSGTILAGITRKSIIEIASDCG-FQVEERAIPVDELLEA------DEVFCTGTAVV 227
TP +G IL G+ R+S++++A G F+V ER I + +LL A EVF +GTA
Sbjct: 257 VTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTAAQ 316
Query: 228 VAPVGSITYRGKRIEFKT 245
VAPV I Y+ + + T
Sbjct: 317 VAPVHRILYKDRNLHIPT 334
>pdb|1EKF|A Chain A, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic
Form)
pdb|1EKF|B Chain B, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic
Form)
pdb|1EKP|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 2.5 Angstroms (Monoclinic
Form).
pdb|1EKP|B Chain B, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 2.5 Angstroms (Monoclinic
Form).
pdb|1EKV|A Chain A, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1EKV|B Chain B, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1KT8|A Chain A, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
In Its Ketimine Form With The Substrate L-Isoleucine
pdb|1KT8|B Chain B, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
In Its Ketimine Form With The Substrate L-Isoleucine
pdb|1KTA|A Chain A, Human Branched Chain Amino Acid Aminotransferase : Three
Dimensional Structure Of The Enzyme In Its Pyridoxamine
Phosphate Form.
pdb|1KTA|B Chain B, Human Branched Chain Amino Acid Aminotransferase : Three
Dimensional Structure Of The Enzyme In Its Pyridoxamine
Phosphate Form.
pdb|2A1H|A Chain A, X-Ray Crystal Structure Of Human Mitochondrial Branched
Chain Aminotransferase (Bcatm) Complexed With Gabapentin
pdb|2A1H|B Chain B, X-Ray Crystal Structure Of Human Mitochondrial Branched
Chain Aminotransferase (Bcatm) Complexed With Gabapentin
Length = 365
Score = 147 bits (372), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 137/258 (53%), Gaps = 14/258 (5%)
Query: 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGK 60
MKA++ +D Q+ LFRP N R+ A R+C+PS + ++ +++ +K WVP
Sbjct: 78 MKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAG 137
Query: 61 GSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGG 119
SLY+RP+L+G+ P LG++ V PVG YF G + P++L + F RA GG
Sbjct: 138 TSLYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGG 197
Query: 120 AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN-----II 174
G K NY P + A RG VL+L + + L EV + NIF+ + +
Sbjct: 198 VGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLEL 256
Query: 175 STPATSGTILAGITRKSIIEIASDCG-FQVEERAIPVDELLEA------DEVFCTGTAVV 227
TP +G IL G+ R+S++++A G F+V ER I + +LL A EVF +GTA
Sbjct: 257 VTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQ 316
Query: 228 VAPVGSITYRGKRIEFKT 245
V PV I Y+ + + T
Sbjct: 317 VCPVHRILYKDRNLHIPT 334
>pdb|2HG8|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase Complexed
With Its Substrate Mimic, N-Methyl Leucine.
pdb|2HG8|B Chain B, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase Complexed
With Its Substrate Mimic, N-Methyl Leucine.
pdb|2HGX|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HGX|B Chain B, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 147 bits (372), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 137/258 (53%), Gaps = 14/258 (5%)
Query: 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGK 60
MKA++ +D Q+ LFRP N R+ A R+C+PS + ++ +++ +K WVP
Sbjct: 78 MKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAG 137
Query: 61 GSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGG 119
SLY+RP+L+G+ P LG++ V PVG YF G + P++L + F RA GG
Sbjct: 138 TSLYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGG 197
Query: 120 AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN-----II 174
G K NY P + A RG VL+L + + L EV + NIF+ + +
Sbjct: 198 VGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLEL 256
Query: 175 STPATSGTILAGITRKSIIEIASDCG-FQVEERAIPVDELLEA------DEVFCTGTAVV 227
TP +G IL G+ R+S++++A G F+V ER I + +LL A EVF +GTA
Sbjct: 257 VTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTAAQ 316
Query: 228 VAPVGSITYRGKRIEFKT 245
V PV I Y+ + + T
Sbjct: 317 VCPVHRILYKDRNLHIPT 334
>pdb|2HHF|B Chain B, X-ray Crystal Structure Of Oxidized Human Mitochondrial
Branched Chain Aminotransferase (hbcatm)
Length = 365
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 136/258 (52%), Gaps = 14/258 (5%)
Query: 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGK 60
MKA++ +D Q+ LFRP N R+ A R+ +PS + ++ +++ +K WVP
Sbjct: 78 MKAFKGKDQQVRLFRPWLNMDRMLRSAMRLXLPSFDKLELLECIRRLIEVDKDWVPDAAG 137
Query: 61 GSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGG 119
SLY+RP+L+G+ P LG++ V PVG YF G + P++L + F RA GG
Sbjct: 138 TSLYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGG 197
Query: 120 AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN-----II 174
G K NY P + A RG VL+L + + L EV + NIF+ + +
Sbjct: 198 VGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLEL 256
Query: 175 STPATSGTILAGITRKSIIEIASDCG-FQVEERAIPVDELLEA------DEVFCTGTAVV 227
TP +G IL G+ R+S++++A G F+V ER I + +LL A EVF +GTA
Sbjct: 257 VTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQ 316
Query: 228 VAPVGSITYRGKRIEFKT 245
V PV I Y+ + + T
Sbjct: 317 VCPVHRILYKDRNLHIPT 334
>pdb|2HHF|A Chain A, X-ray Crystal Structure Of Oxidized Human Mitochondrial
Branched Chain Aminotransferase (hbcatm)
Length = 365
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 135/258 (52%), Gaps = 14/258 (5%)
Query: 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGK 60
MKA++ +D Q+ LFRP N R+ A R+ +PS + ++ +++ +K WVP
Sbjct: 78 MKAFKGKDQQVRLFRPWLNMDRMLRSAMRLXLPSFDKLELLECIRRLIEVDKDWVPDAAG 137
Query: 61 GSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGG 119
SL +RP+L+G+ P LG++ V PVG YF G + P++L + F RA GG
Sbjct: 138 TSLXVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGG 197
Query: 120 AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN-----II 174
G K NY P + A RG VL+L + + L EV + NIF+ + +
Sbjct: 198 VGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLEL 256
Query: 175 STPATSGTILAGITRKSIIEIASDCG-FQVEERAIPVDELLEA------DEVFCTGTAVV 227
TP +G IL G+ R+S++++A G F+V ER I + +LL A EVF +GTA
Sbjct: 257 VTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQ 316
Query: 228 VAPVGSITYRGKRIEFKT 245
V PV I Y+ + + T
Sbjct: 317 VCPVHRILYKDRNLHIPT 334
>pdb|1I1K|A Chain A, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|B Chain B, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|C Chain C, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1L|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|A Chain A, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|B Chain B, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|C Chain C, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1IYD|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
Length = 309
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 133/272 (48%), Gaps = 19/272 (6%)
Query: 12 VLFRPDQNAIRLQTGAERMCMP-SPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLV 70
V+FR ++ RL A+ P S SID+ ++A + N S YIRPL+
Sbjct: 50 VVFRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDVIRKNNL-------TSAYIRPLIF 102
Query: 71 GSGPILGLAPAPEYT--FLVFASPVGNYF-KEGLAPLNLYVEDEFHRATPGGA-GGVKAI 126
+G+ P Y+ ++ A P G Y E L + ++RA P KA
Sbjct: 103 VGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAG 162
Query: 127 SNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAG 186
NY L S A+ G+ + + LD VN + E + N+F +K ++ TP + + L G
Sbjct: 163 GNYLSSLLVGSEARRHGYQEGIALD-VNGY-ISEGAGENLFEVKDGVLFTPPFTSSALPG 220
Query: 187 ITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRI-EFKT 245
ITR +II++A + G +V E+ + + L ADEVF +GTA + PV S+ G ++ E +
Sbjct: 221 ITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSVD--GIQVGEGRC 278
Query: 246 GAQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 277
G V++ + G+ TG +D GW ++N
Sbjct: 279 G--PVTKRIQQAFFGLFTGETEDKWGWLDQVN 308
>pdb|1A3G|A Chain A, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|B Chain B, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|C Chain C, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
Length = 308
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 133/272 (48%), Gaps = 19/272 (6%)
Query: 12 VLFRPDQNAIRLQTGAERMCMP-SPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLV 70
V+FR ++ RL A+ P S SID+ ++A + N S YIRPL+
Sbjct: 49 VVFRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDVIRKNNL-------TSAYIRPLIF 101
Query: 71 GSGPILGLAPAPEYT--FLVFASPVGNYF-KEGLAPLNLYVEDEFHRATPGGA-GGVKAI 126
+G+ P Y+ ++ A P G Y E L + ++RA P KA
Sbjct: 102 VGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAG 161
Query: 127 SNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAG 186
NY L S A+ G+ + + LD VN + E + N+F +K ++ TP + + L G
Sbjct: 162 GNYLSSLLVGSEARRHGYQEGIALD-VNGY-ISEGAGENLFEVKDGVLFTPPFTSSALPG 219
Query: 187 ITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRI-EFKT 245
ITR +II++A + G +V E+ + + L ADEVF +GTA + PV S+ G ++ E +
Sbjct: 220 ITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSVD--GIQVGEGRC 277
Query: 246 GAQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 277
G V++ + G+ TG +D GW ++N
Sbjct: 278 G--PVTKRIQQAFFGLFTGETEDKWGWLDQVN 307
>pdb|1WRV|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|1WRV|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|1WRV|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|2EIY|A Chain A, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EIY|B Chain B, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EIY|C Chain C, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EJ0|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|D Chain D, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|E Chain E, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|F Chain F, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ2|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|D Chain D, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|E Chain E, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|F Chain F, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ3|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
pdb|2EJ3|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
pdb|2EJ3|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
Length = 308
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 121/285 (42%), Gaps = 25/285 (8%)
Query: 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPG 59
++AY G +FR ++ R A+ + M P + ++ +A+K+ N G
Sbjct: 39 IRAYETAKGP-AIFRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKEVVRRN-------G 90
Query: 60 KGSLYIRPLLVGSGPILGLAPAPE--YTFLVFASPVGNYF-KEGLAPLNLYVEDEFHR-- 114
S YIRPL LG+ P P +V A G Y +E + + + R
Sbjct: 91 YRSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYLGEEAVRKGARLITSSWARFP 150
Query: 115 --ATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN 172
PG A K NY A A G + L LD + + E S N+F ++
Sbjct: 151 ANVMPGKA---KVGGNYVNSALAKMEAVAAGADEALLLDE--EGYVAEGSGENLFFVRDG 205
Query: 173 IISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVG 232
+I S L GITR S+I IA D G++V+ D+L ADEVF TGTA V PV
Sbjct: 206 VIYALEHS-VNLEGITRDSVIRIAKDLGYEVQVVRATRDQLYMADEVFMTGTAAEVTPVS 264
Query: 233 SITYRGKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 277
I +R K A V+ L + TG + +GW +N
Sbjct: 265 MIDWRPIG---KGTAGPVALRLREVYLEAVTGRRPEYEGWLTYVN 306
>pdb|3U0G|A Chain A, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|B Chain B, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|C Chain C, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|D Chain D, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|E Chain E, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|F Chain F, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
Length = 328
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 107/240 (44%), Gaps = 12/240 (5%)
Query: 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGK 60
++AY+ DG +FR ++ RL A+ M P + ++A ++ + +
Sbjct: 62 VRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMDVPFDQETLEAAQRDVVRENK------L 115
Query: 61 GSLYIRPLLVGSGPILGLAPAPEYTFLVFAS-PVGNYF-KEGLAPLNLYVEDEFHRATPG 118
S Y+RP++ LG++ + A+ P G Y +EGLA F R
Sbjct: 116 ESCYLRPIIWIGSEKLGVSAKGNTIHVAIAAWPWGAYLGEEGLAKGIRVKTSSFTRHHVN 175
Query: 119 -GAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTP 177
KA Y + A A G+ + L LD + E S N F++ + TP
Sbjct: 176 VSMVRAKASGWYVNSILANQEATADGYDEALLLDV--DGYVSEGSGENFFLVNRGKLYTP 233
Query: 178 ATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYR 237
+ + L GITR ++I +A + G +V E+ I DE+ ADE F TGTA V P+ + R
Sbjct: 234 DLA-SCLDGITRDTVITLAKEAGIEVIEKRITRDEVYTADEAFFTGTAAEVTPIRELDNR 292
>pdb|3CSW|A Chain A, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|B Chain B, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|C Chain C, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|D Chain D, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
Length = 285
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%)
Query: 160 EVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEV 219
E S N+F++K + TP+ IL GITR+++I++A VEER + V EL EADE
Sbjct: 176 EGSFSNVFLVKEGKLITPSLDSGILDGITRENVIKLAKSLEIPVEERVVWVWELFEADEX 235
Query: 220 FCTGTAVVVAPV 231
F T T+ V PV
Sbjct: 236 FLTHTSAGVVPV 247
>pdb|3SNO|A Chain A, Crystal Structure Of A Hypothetical Aminotransferase
(Ncgl2491) From Corynebacterium Glutamicum Atcc 13032
Kitasato At 1.60 A Resolution
Length = 315
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 140 KNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDC 199
K+ GF DV++ D + E ++ + KG+ I TP+ G IL G T+ ++ A++
Sbjct: 201 KSNGFDDVIFTDG---DRVLEGATSTVVSFKGDKIRTPSPGGDILPGTTQAALFAHATEK 257
Query: 200 GFQVEERAIPVDELLEADEVF 220
G++ +E+ + +D+L AD V+
Sbjct: 258 GWRCKEKDLSIDDLFGADSVW 278
>pdb|3LUL|A Chain A, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase. (Yp_094631.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.78 A Resolution
pdb|3LUL|B Chain B, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase. (Yp_094631.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.78 A Resolution
Length = 272
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 128 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGI 187
NY + A +A G D L+ ++ N ++ E + N+F+++ NI+ TP IL GI
Sbjct: 144 NYLEAIIAQRQAIAVGADDALFFNTEN--HVTETTCANLFLIENNILYTPRVEDGILPGI 201
Query: 188 TRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGT 224
TR +I V+E ++ + +AD VF T +
Sbjct: 202 TRARLISHCQQHKXSVQEISLTKKRIEDADAVFLTNS 238
>pdb|1DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|1DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|2DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
pdb|2DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
Length = 282
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%)
Query: 160 EVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEV 219
E SS N+F +K I+ T + IL GITR +I A++ V+E E L+ DE+
Sbjct: 177 EGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDEL 236
Query: 220 FCTGTAVVVAPVGSI 234
F T T + PV I
Sbjct: 237 FVTSTTSEITPVIEI 251
>pdb|3LQS|A Chain A, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
pdb|3LQS|B Chain B, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
Length = 280
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%)
Query: 160 EVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEV 219
E SS N+F +K I+ T + IL GITR +I A++ V+E E L+ DE+
Sbjct: 177 EGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDEL 236
Query: 220 FCTGTAVVVAPVGSI 234
F T T + PV I
Sbjct: 237 FVTSTTSEITPVIEI 251
>pdb|3DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|3DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|4DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
pdb|4DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
Length = 277
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%)
Query: 160 EVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEV 219
E SS N+F +K I+ T + IL GITR +I A++ V+E E L+ DE+
Sbjct: 177 EGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDEL 236
Query: 220 FCTGTAVVVAPVGSI 234
F T T + PV I
Sbjct: 237 FVTSTTSEITPVIEI 251
>pdb|1G2W|A Chain A, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
pdb|1G2W|B Chain B, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
Length = 282
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%)
Query: 162 SSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFC 221
SS N+F +K I+ T + IL GITR +I A++ V+E E L+ DE+F
Sbjct: 179 SSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFV 238
Query: 222 TGTAVVVAPVGSI 234
T T + PV I
Sbjct: 239 TSTTSEITPVIEI 251
>pdb|5DAA|A Chain A, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|5DAA|B Chain B, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
Length = 277
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%)
Query: 162 SSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFC 221
SS N+F +K I+ T + IL GITR +I A++ V+E E L+ DE+F
Sbjct: 179 SSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFV 238
Query: 222 TGTAVVVAPVGSI 234
T T + PV I
Sbjct: 239 TSTTSEITPVIEI 251
>pdb|1A0G|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|1A0G|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|2DAB|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
pdb|2DAB|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
Length = 282
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%)
Query: 160 EVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEV 219
E SS N+F +K I+ T + I GITR +I A++ V+E E L+ DE+
Sbjct: 177 EGSSSNVFGIKDGILYTHPANNMIAKGITRDVVIACANEINMPVKEIPFTTHEALKMDEL 236
Query: 220 FCTGTAVVVAPVGSI 234
F T T + PV I
Sbjct: 237 FVTSTTSEITPVIEI 251
>pdb|1ET0|A Chain A, Crystal Structure Of Aminodeoxychorismate Lyase From
Escherichia Coli
pdb|1I2K|A Chain A, Aminodeoxychorismate Lyase From Escherichia Coli
pdb|1I2L|A Chain A, Deoxychorismate Lyase From Escherichia Coli With Inhibitor
Length = 269
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 121 GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATS 180
G+K ++ VL S + + L LDS + + E + N+F KGN++ TP
Sbjct: 137 AGIKHLNRLEQVLIR-SHLEQTNADEALVLDS--EGWVTECCAANLFWRKGNVVYTPRLD 193
Query: 181 GTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPV 231
+ GI R+ I + + +Q+ E ++E L+ADE+ + V PV
Sbjct: 194 QAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQADEMVICNALMPVMPV 244
>pdb|2Y4R|A Chain A, Crystal Structure Of 4-Amino-4-Deoxychorismate Lyase From
Pseudomonas Aeruginosa
pdb|2Y4R|B Chain B, Crystal Structure Of 4-Amino-4-Deoxychorismate Lyase From
Pseudomonas Aeruginosa
Length = 292
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 122 GVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSG 181
G+K ++ VL A + + G ++ L LD V+++ +E V S + +L G +++ P
Sbjct: 159 GLKHLNRLEQVL-ARAEWSDAGHAEGLMLD-VHERVVEGVFSNLLLVLDGTLVA-PDLRR 215
Query: 182 TILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSI 234
+AG+ R ++E A G + R + + EL ADEVF + + PV ++
Sbjct: 216 CGVAGVMRAELLERAEGIGVPLAIRDVSMAELATADEVFLCNSQFGIWPVRAL 268
>pdb|1JMS|A Chain A, Crystal Structure Of The Catalytic Core Of Murine Terminal
Deoxynucleotidyl Transferase
Length = 381
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query: 120 AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNII----- 174
A VK IS YA + N+ F+D L + + N + E SC F+ +++
Sbjct: 15 APAVKKISQYACQRRTTLNNYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPF 74
Query: 175 ---STPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCT 222
S T G G KSIIE + G E +A+ DE ++ ++F +
Sbjct: 75 PITSMKDTEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTS 125
>pdb|1KDH|A Chain A, Binary Complex Of Murine Terminal Deoxynucleotidyl
Transferase With A Primer Single Stranded Dna
pdb|1KEJ|A Chain A, Crystal Structure Of Murine Terminal Deoxynucleotidyl
Transferase Complexed With Ddatp
Length = 363
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
Query: 124 KAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNII--------S 175
K IS YA + N+ F+D L + + N + E SC F+ +++ S
Sbjct: 1 KKISQYACQRRTTLNNYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITS 60
Query: 176 TPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCT 222
T G G KSIIE + G E +A+ DE ++ ++F +
Sbjct: 61 MKDTEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTS 107
>pdb|1USY|H Chain H, Atp Phosphoribosyl Transferase (Hisg:hisz) Complex From
Thermotoga Maritima
Length = 208
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 163 SCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCT 222
C I LKG++ P +AG++ +I ++ G ++E + + DE+F
Sbjct: 123 HCRIIPLKGSVELAP------IAGLS--DLIVDITETGRTLKENNLEI-----LDEIFVI 169
Query: 223 GTAVVVAPVGSITYRGKRIEFKTGAQSV 250
T VVV PV T R K + F Q V
Sbjct: 170 RTHVVVNPVSYRTKREKVVSFLEKLQEV 197
>pdb|3MPU|A Chain A, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|3MPU|C Chain C, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|3MPU|E Chain E, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|3NPM|A Chain A, Crystal Structure Of The C47aA241C DISULFIDE-Linked C6
Aspartate Transcarbamoylase Enzyme
Length = 310
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 146 DVLYLDSVNKKNLEEVSSCNI---FILKGNIISTPATSGTILAGITRKSIIEIASDC 199
D+LY+ V K+ L+ CN+ F+L+ + + + +L + R + EIA+D
Sbjct: 223 DILYMTRVQKERLDPSEYCNVKAQFVLRASDLHNAKANMKVLHPLPR--VDEIATDV 277
>pdb|4IAO|A Chain A, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
pdb|4IAO|B Chain B, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
Length = 492
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 211 DELLEADEVFCTGTAVVVAPVGSI 234
+++LE D + C GT++ VAPV I
Sbjct: 389 EDILECDLLICIGTSLKVAPVSEI 412
>pdb|2HJH|A Chain A, Crystal Structure Of The Sir2 Deacetylase
pdb|2HJH|B Chain B, Crystal Structure Of The Sir2 Deacetylase
Length = 354
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 211 DELLEADEVFCTGTAVVVAPVGSI 234
+++LE D + C GT++ VAPV I
Sbjct: 251 EDILECDLLICIGTSLKVAPVSEI 274
>pdb|1P8A|A Chain A, Solution Structure Of The Low Molecular Weight Protein
Tyrosine Phosphatase From Tritrichomonas Foetus
Length = 146
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 166 IFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQV 203
+F+ GNI +PA G + K II+ A+ GF V
Sbjct: 8 LFVCLGNICRSPACEGICRDMVGDKLIIDSAATSGFHV 45
>pdb|3L8K|A Chain A, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
pdb|3L8K|B Chain B, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
Length = 466
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 179 TSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEAD--EVFCTGTAVVVAP 230
T+ +LA R I E A + G + + I VDE ++ + VF TG A +AP
Sbjct: 261 TNSVVLAAGRRPVIPEGAREIGLSISKTGIVVDETMKTNIPNVFATGDANGLAP 314
>pdb|1USY|E Chain E, Atp Phosphoribosyl Transferase (Hisg:hisz) Complex From
Thermotoga Maritima
pdb|1USY|F Chain F, Atp Phosphoribosyl Transferase (Hisg:hisz) Complex From
Thermotoga Maritima
pdb|1USY|G Chain G, Atp Phosphoribosyl Transferase (Hisg:hisz) Complex From
Thermotoga Maritima
Length = 208
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 163 SCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCT 222
C I LKG++ P +AG++ +I ++ G ++E + + DE+F
Sbjct: 123 HCRIIPLKGSVELAP------IAGLS--DLIVDITETGRTLKENNLEI-----LDEIFVI 169
Query: 223 GTAVVVAPVGSITYRGKRIEFKTGAQSV 250
T VVV PV T R + + F Q V
Sbjct: 170 RTHVVVNPVSYRTKREEVVSFLEKLQEV 197
>pdb|1O64|A Chain A, Crystal Structure Of An Atp Phosphoribosyltransferase
pdb|1O64|B Chain B, Crystal Structure Of An Atp Phosphoribosyltransferase
Length = 219
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 163 SCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCT 222
C I LKG++ P +AG++ +I ++ G ++E + + DE+F
Sbjct: 124 HCRIIPLKGSVELAP------IAGLS--DLIVDITETGRTLKENNLEI-----LDEIFVI 170
Query: 223 GTAVVVAPVGSITYRGKRIEFKTGAQSV 250
T VVV PV T R + + F Q V
Sbjct: 171 RTHVVVNPVSYRTKREEVVSFLEKLQEV 198
>pdb|1FA2|A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato
Length = 498
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%)
Query: 74 PILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGV 123
PI G+ P Y L P+G + + P VEDE + GG GV
Sbjct: 2 PIPGVMPIGNYVSLYVMLPLGVVNADNVFPDKEKVEDELKQVKAGGCDGV 51
>pdb|1DNV|A Chain A, Parvovirus (Densovirus) From Galleria Mellonella
Length = 437
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 166 IFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTA 225
IF L N+I P +GT ++ + + C ++ + +P+ ++ G+
Sbjct: 47 IFGLANNVIG-PTGTGTT-------AVNRLLTTCLAEIPWQKLPLYMNQSEFDLLPPGSR 98
Query: 226 VVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGWTVE 275
VV V + +R RI F+T + + + + +QT + + GW +
Sbjct: 99 VVECNV-KVIFRTNRIAFETSSTVTKQATLNQISNVQTAIGLNKLGWGIN 147
>pdb|1O63|A Chain A, Crystal Structure Of An Atp Phosphoribosyltransferase
pdb|1O63|B Chain B, Crystal Structure Of An Atp Phosphoribosyltransferase
Length = 219
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 163 SCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCT 222
C I LKG++ P +AG++ +I ++ G ++E + + DE+F
Sbjct: 124 HCRIIPLKGSVELAP------IAGLS--DLIVDITETGRTLKENNLEI-----LDEIFVI 170
Query: 223 GTAVVVAPVGSITYRGKRIEFKTGAQSV 250
T VVV PV T R + + F Q V
Sbjct: 171 RTHVVVNPVSYRTKREEVVSFLEKLQEV 198
>pdb|1J4S|A Chain A, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 1)
pdb|1J4S|B Chain B, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 1)
pdb|1J4S|C Chain C, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 1)
pdb|1J4S|D Chain D, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 1)
Length = 149
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 104 LNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSS 163
+ L DEF + G G A++ PV+++++ N+G + Y D EE +
Sbjct: 67 IELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGD-------EEGTY 119
Query: 164 CNIFILKGNIISTPATSGTILAGI 187
N+ I G I+ +G +L I
Sbjct: 120 FNLPIENGLIVGFKGRTGDLLDAI 143
>pdb|1J4T|A Chain A, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|B Chain B, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|C Chain C, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|D Chain D, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|E Chain E, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|F Chain F, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|G Chain G, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|H Chain H, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4U|A Chain A, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
pdb|1J4U|B Chain B, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
pdb|1J4U|C Chain C, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
pdb|1J4U|D Chain D, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
Length = 149
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 104 LNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSS 163
+ L DEF + G G A++ PV+++++ N+G + Y D EE +
Sbjct: 67 IELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGD-------EEGTY 119
Query: 164 CNIFILKGNIISTPATSGTILAGI 187
N+ I G I+ +G +L I
Sbjct: 120 FNLPIENGLIVGFKGRTGDLLDAI 143
>pdb|1VBP|A Chain A, Crystal Structure Of Artocarpin-Mannopentose Complex
pdb|1VBP|B Chain B, Crystal Structure Of Artocarpin-Mannopentose Complex
Length = 149
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 104 LNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSS 163
+ L DEF + G G A++ PV+++++ N+G + Y D EE +
Sbjct: 67 IELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGD-------EEGTY 119
Query: 164 CNIFILKGNIISTPATSGTILAGI 187
N+ I G I+ +G +L I
Sbjct: 120 FNLPIENGLIVGFKGRTGDLLDAI 143
>pdb|1VBO|A Chain A, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|B Chain B, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|C Chain C, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|D Chain D, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|E Chain E, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|F Chain F, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|G Chain G, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|H Chain H, Crystal Structure Of Artocarpin-Mannotriose Complex
Length = 149
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 104 LNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSS 163
+ L DEF + G G A++ PV+++++ N+G + Y D EE +
Sbjct: 67 IELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGD-------EEGTY 119
Query: 164 CNIFILKGNIISTPATSGTILAGI 187
N+ I G I+ +G +L I
Sbjct: 120 FNLPIENGLIVGFKGRTGDLLDAI 143
>pdb|3OVK|A Chain A, Crystal Structure Of An Xxa-Pro Aminopeptidase From
Streptococcus Pyogenes
pdb|3OVK|B Chain B, Crystal Structure Of An Xxa-Pro Aminopeptidase From
Streptococcus Pyogenes
pdb|3OVK|C Chain C, Crystal Structure Of An Xxa-Pro Aminopeptidase From
Streptococcus Pyogenes
pdb|3OVK|D Chain D, Crystal Structure Of An Xxa-Pro Aminopeptidase From
Streptococcus Pyogenes
Length = 132
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 183 ILAGITRKSIIEIASDCGFQVEERAIP---VDELLEADEVFCTG 223
+L +R +++ AS GF + E P V ELLEAD++ C G
Sbjct: 56 VLITDSRYTLLAKASVEGFDIIESRTPLKVVAELLEADQIDCLG 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,437,391
Number of Sequences: 62578
Number of extensions: 365675
Number of successful extensions: 802
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 722
Number of HSP's gapped (non-prelim): 51
length of query: 277
length of database: 14,973,337
effective HSP length: 98
effective length of query: 179
effective length of database: 8,840,693
effective search space: 1582484047
effective search space used: 1582484047
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)