Query 023788
Match_columns 277
No_of_seqs 221 out of 1173
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 06:39:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023788.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023788hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02259 branched-chain-amino- 100.0 3.5E-60 7.7E-65 431.8 34.6 277 1-277 112-388 (388)
2 PLN02782 Branched-chain amino 100.0 8.1E-60 1.8E-64 431.4 34.9 277 1-277 126-403 (403)
3 PLN02883 Branched-chain amino 100.0 6.3E-59 1.4E-63 422.7 33.8 276 1-276 108-383 (384)
4 PLN03117 Branched-chain-amino- 100.0 2E-57 4.2E-62 411.8 34.8 276 1-277 76-351 (355)
5 TIGR01123 ilvE_II branched-cha 100.0 2.4E-55 5.2E-60 393.5 33.9 274 1-276 31-313 (313)
6 PRK13357 branched-chain amino 100.0 1.1E-54 2.4E-59 394.4 33.4 275 1-276 72-355 (356)
7 TIGR01122 ilvE_I branched-chai 100.0 4.9E-54 1.1E-58 382.8 32.5 259 3-276 30-298 (298)
8 KOG0975 Branched chain aminotr 100.0 6.7E-54 1.5E-58 375.2 26.4 272 1-275 100-379 (379)
9 PRK06606 branched-chain amino 100.0 9.1E-53 2E-57 375.7 32.6 261 3-276 39-306 (306)
10 cd01557 BCAT_beta_family BCAT_ 100.0 4.9E-52 1.1E-56 366.4 32.9 256 3-264 18-279 (279)
11 PRK12479 branched-chain amino 100.0 4.6E-50 9.9E-55 357.1 31.0 246 2-266 35-288 (299)
12 PRK07650 4-amino-4-deoxychoris 100.0 1.2E-49 2.6E-54 352.1 30.8 243 2-264 31-277 (283)
13 cd00449 PLPDE_IV PyridoxaL 5'- 100.0 1.8E-49 3.8E-54 346.3 30.5 241 2-258 12-256 (256)
14 PRK08320 branched-chain amino 100.0 2.9E-49 6.2E-54 350.6 31.2 243 2-263 34-284 (288)
15 PRK07544 branched-chain amino 100.0 2.4E-49 5.2E-54 351.6 30.2 246 2-266 40-290 (292)
16 PRK13356 aminotransferase; Pro 100.0 3.7E-49 8.1E-54 349.4 31.1 242 2-263 38-283 (286)
17 cd01559 ADCL_like ADCL_like: 4 100.0 4.9E-49 1.1E-53 342.2 28.0 235 2-258 12-249 (249)
18 PRK12400 D-amino acid aminotra 100.0 1.4E-48 3E-53 346.3 30.4 240 2-263 38-283 (290)
19 PLN02845 Branched-chain-amino- 100.0 3.3E-48 7.2E-53 349.3 30.7 245 2-265 72-325 (336)
20 PRK06092 4-amino-4-deoxychoris 100.0 3.4E-48 7.4E-53 340.4 29.3 238 2-260 27-267 (268)
21 cd01558 D-AAT_like D-Alanine a 100.0 6.8E-48 1.5E-52 338.9 29.8 235 2-258 29-270 (270)
22 TIGR03461 pabC_Proteo aminodeo 100.0 7.6E-48 1.7E-52 337.0 28.6 233 2-255 25-260 (261)
23 PRK06680 D-amino acid aminotra 100.0 2.2E-47 4.8E-52 338.0 31.2 242 2-264 34-283 (286)
24 COG0115 IlvE Branched-chain am 100.0 2.8E-47 6E-52 336.9 30.4 246 3-265 34-283 (284)
25 PRK07849 4-amino-4-deoxychoris 100.0 4.2E-47 9.1E-52 336.8 30.9 239 2-261 43-287 (292)
26 TIGR01121 D_amino_aminoT D-ami 100.0 4.7E-47 1E-51 334.3 30.7 236 2-261 31-274 (276)
27 PRK09266 hypothetical protein; 100.0 1.5E-45 3.1E-50 323.3 27.2 231 2-260 29-260 (266)
28 PF01063 Aminotran_4: Aminotra 100.0 1.4E-44 3E-49 310.6 23.9 228 14-258 1-231 (231)
29 PRK07546 hypothetical protein; 100.0 3.3E-42 7.1E-47 291.7 24.1 200 2-234 8-209 (209)
30 PRK07101 hypothetical protein; 100.0 3.9E-33 8.5E-38 231.7 20.0 180 1-228 6-187 (187)
31 PF15507 DUF4649: Domain of un 62.9 11 0.00023 26.1 3.1 52 205-256 12-65 (72)
32 cd05569 PTS_IIB_fructose PTS_I 52.6 33 0.00072 24.9 4.6 46 181-226 9-64 (96)
33 TIGR00829 FRU PTS system, fruc 52.0 29 0.00063 24.7 4.1 45 181-225 8-62 (85)
34 PRK10474 putative PTS system f 49.3 32 0.00069 24.6 4.0 35 191-225 5-48 (88)
35 PF13051 DUF3912: Protein of u 43.3 24 0.00053 23.0 2.2 38 163-200 31-68 (68)
36 COG2257 Uncharacterized homolo 39.7 22 0.00047 25.7 1.8 32 185-216 30-61 (92)
37 COG1935 Uncharacterized conser 37.8 39 0.00084 25.6 2.9 44 182-226 4-52 (122)
38 PF04322 DUF473: Protein of un 36.2 38 0.00083 25.9 2.7 46 182-227 4-53 (119)
39 PF14894 Lsm_C: Lsm C-terminal 35.6 38 0.00082 22.8 2.3 20 246-265 43-62 (64)
40 PF14475 Mso1_Sec1_bdg: Sec1-b 34.8 54 0.0012 20.0 2.7 22 248-273 20-41 (41)
41 PRK03972 ribosomal biogenesis 34.5 2.8E+02 0.0062 23.4 8.4 91 137-232 43-167 (208)
42 PRK10427 putative PTS system f 32.5 84 0.0018 23.7 4.1 45 181-225 13-67 (114)
43 cd03079 GST_N_Metaxin2 GST_N f 32.4 1.3E+02 0.0029 20.7 4.8 58 173-241 2-61 (74)
44 COG1445 FrwB Phosphotransferas 31.0 1.2E+02 0.0026 23.3 4.6 37 188-224 19-65 (122)
45 KOG2708 Predicted metalloprote 29.7 30 0.00065 29.7 1.4 38 172-213 30-71 (336)
46 KOG3442 Uncharacterized conser 29.4 1.2E+02 0.0027 23.2 4.5 40 23-66 58-98 (132)
47 PRK06683 hypothetical protein; 29.2 84 0.0018 22.2 3.4 29 188-217 41-69 (82)
48 PF09778 Guanylate_cyc_2: Guan 27.6 71 0.0015 27.0 3.3 26 190-215 93-118 (212)
49 PRK13602 putative ribosomal pr 25.9 1E+02 0.0022 21.7 3.4 29 187-216 40-68 (82)
50 cd03041 GST_N_2GST_N GST_N fam 25.7 1.2E+02 0.0026 20.5 3.7 61 191-256 15-75 (77)
51 cd03057 GST_N_Beta GST_N famil 25.1 73 0.0016 21.3 2.5 61 192-257 14-75 (77)
52 cd01712 ThiI ThiI is required 24.4 90 0.002 25.0 3.3 63 135-205 95-160 (177)
53 PRK13740 conjugal transfer pro 24.0 33 0.00071 23.5 0.5 9 14-22 43-51 (70)
54 PF14542 Acetyltransf_CG: GCN5 23.8 1.2E+02 0.0025 21.0 3.3 34 172-205 27-60 (78)
55 PF03683 UPF0175: Uncharacteri 20.9 74 0.0016 22.0 1.8 31 181-214 40-70 (76)
56 PRK03767 NAD(P)H:quinone oxido 20.6 2.3E+02 0.005 23.3 5.1 41 186-226 13-80 (200)
57 TIGR00789 flhB_rel flhB C-term 20.5 1.1E+02 0.0023 21.7 2.6 29 185-213 25-53 (82)
58 TIGR00853 pts-lac PTS system, 20.2 2.8E+02 0.0061 19.9 4.9 30 185-214 16-45 (95)
No 1
>PLN02259 branched-chain-amino-acid aminotransferase 2
Probab=100.00 E-value=3.5e-60 Score=431.82 Aligned_cols=277 Identities=77% Similarity=1.249 Sum_probs=252.0
Q ss_pred CceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCcccCC
Q 023788 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAP 80 (277)
Q Consensus 1 ~~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~~~~ 80 (277)
||+||..||++.+|++++|++||.+||+.|+|+.|+.+++.+.+.++++.|+.|+|+...+.+|||++++|+++.+|+.|
T Consensus 112 lkayr~~~G~i~lfr~~~h~~RL~~SA~rL~lp~~~~e~~~~~i~~lv~~n~~~vp~~~~~~lyiRp~v~g~~~~lG~~p 191 (388)
T PLN02259 112 TKAYRKENGKLLLFRPDHNAIRMKLGAERMLMPSPSVDQFVNAVKQTALANKRWVPPAGKGTLYIRPLLMGSGPILGLGP 191 (388)
T ss_pred EEEEECCCCeEeecCcHHHHHHHHHhHHHhCCCCcCHHHHHHHHHHHHHhccccCCCCCCceEEEEEEEEecCCccCcCC
Confidence 58888889999999999999999999999999988899999999999999999998766678999998888876678877
Q ss_pred CCCcEEEEEEEecCccccCCCcCeEEEeeecccccCCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCCCeEEe
Q 023788 81 APEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEE 160 (277)
Q Consensus 81 ~~~~~~~i~~~p~~~~~~~g~~~i~l~~~~~~~r~~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~G~v~E 160 (277)
+.++++++++.|.++++..|++++++.+.+++.|..|..++++|+.+||+++++++++|+++|+||+||+|..++|+|+|
T Consensus 192 ~~~~~~~i~~~p~~~~~~~g~~~i~l~v~~~~~Ra~p~~~g~~K~~~NY~~~l~a~~eA~~~G~de~L~Ld~~~~g~V~E 271 (388)
T PLN02259 192 APEYTFIVYASPVGNYFKEGMAALNLYVEEEYVRAAPGGAGGVKSITNYAPVLKALSRAKSRGFSDVLYLDSVKKKYLEE 271 (388)
T ss_pred CCCcEEEEEEEechhhhhcCcceEEEEeecceeccCCCCCcccchhhhHHHHHHHHHHHHHcCCCEEEEecCCCCCEEEE
Confidence 66788999999988777778777777766667888888889999987999999999999999999999999622699999
Q ss_pred eCceeEEEEECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEEEeeCCeE
Q 023788 161 VSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKR 240 (277)
Q Consensus 161 ~t~sNvf~v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~i~~~~~~ 240 (277)
++++|+|++++++|+||+++.+||+||||+.||++|++.|++|+|+.++++||.+|||+|+|||+.+|+||++|++.++.
T Consensus 272 ~~~sNlF~v~~~~l~TP~l~~~iL~GITR~sIl~la~~~G~~V~Er~i~~~eL~~AdEvF~tgTa~~V~PV~~I~~~~~~ 351 (388)
T PLN02259 272 ASSCNVFVVKGRTISTPATNGTILEGITRKSVMEIASDQGYQVVEKAVHVDEVMDADEVFCTGTAVVVAPVGTITYQEKR 351 (388)
T ss_pred cCcEEEEEEECCEEEcCCCcCCcCcCHHHHHHHHHHHHCCCeEEEEECCHHHHHhCCEEEEcCCcceEEEEEEEecCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999875666
Q ss_pred EeeCCCccHHHHHHHHHHHHhHhcCCCCCCCCceecC
Q 023788 241 IEFKTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 277 (277)
Q Consensus 241 i~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 277 (277)
+.++++.||++++|++.|.++|+|+.+|.++|+++||
T Consensus 352 ~~~~~~~g~~t~~L~~~l~~iq~G~~~~~~~W~~~~~ 388 (388)
T PLN02259 352 VEYKTGDESVCQKLRSVLVGIQTGLIEDNKGWVTDIN 388 (388)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHcCCCCCCCCCeEECC
Confidence 4455556899999999999999999999999999986
No 2
>PLN02782 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=8.1e-60 Score=431.39 Aligned_cols=277 Identities=73% Similarity=1.223 Sum_probs=252.8
Q ss_pred CceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCcccCC
Q 023788 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAP 80 (277)
Q Consensus 1 ~~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~~~~ 80 (277)
||+|+..||++++|++++|++||.+||++|+|+.++.+++.+.+.++++.|+.|+|+...+.+|||++++|+++.+|+.+
T Consensus 126 ~kayr~~~G~i~lFr~d~H~~RL~~SA~rL~lp~~~~e~l~~~i~~lv~~n~~~vP~~~~~~lyiRp~v~g~~~~lG~~~ 205 (403)
T PLN02782 126 LKAYRKEDGNILLFRPEENAIRMRNGAERMCMPAPTVEQFVEAVKETVLANKRWVPPPGKGSLYIRPLLMGSGAVLGLAP 205 (403)
T ss_pred EEEEEcCCCcEeeeChHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHhccccCCCCCCccEEEEEEEEecCCCcCcCC
Confidence 57888889999999999999999999999999988899999999999999999998766678999998888776778877
Q ss_pred CCCcEEEEEEEecCccccCCCcCeEEEeeecccccCCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCCCeEEe
Q 023788 81 APEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEE 160 (277)
Q Consensus 81 ~~~~~~~i~~~p~~~~~~~g~~~i~l~~~~~~~r~~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~G~v~E 160 (277)
+.++++++++.|.++++..|.+++++.++.++.|..|..++++|+++||+.+++++++|+++|+||+||+|...+|+|+|
T Consensus 206 ~~~~~~~i~~~p~~~~~~~g~~~v~l~v~~~~~Ra~p~g~g~~Kt~~nY~~~l~a~~eA~~~G~de~L~Ld~~~~g~V~E 285 (403)
T PLN02782 206 APEYTFLIYVSPVGNYFKEGVAPINLIVENEFHRATPGGTGGVKTIGNYAAVLKAQSIAKAKGYSDVLYLDCVHKKYLEE 285 (403)
T ss_pred CCCcEEEEEEEECccccccCCccEEEEEeCceeecCCCCCcccchhhhHHHHHHHHHHHHHcCCCEEEEEeCCCCCEEEE
Confidence 66788999999988777778778888776667888888899999988999999999999999999999999522699999
Q ss_pred eCceeEEEEECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEEEeeCCeE
Q 023788 161 VSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKR 240 (277)
Q Consensus 161 ~t~sNvf~v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~i~~~~~~ 240 (277)
++++|+|++++++|+||+++.+||+||||+.||++|+++|++|+|+.++++||.+|||+|+|||+.+|+||.+|+++|+.
T Consensus 286 ~~~sNlF~v~~~~l~TP~l~~~iLpGITR~svlela~~~Gi~V~Er~i~~~eL~~AdEvF~tgTa~~V~PV~~I~~~g~~ 365 (403)
T PLN02782 286 VSSCNIFIVKDNVISTPAIKGTILPGITRKSIIDVARSQGFQVEERNVTVDELLEADEVFCTGTAVVVSPVGSITYKGKR 365 (403)
T ss_pred cCcEEEEEEECCEEEcCCCcCCcCcCHHHHHHHHHHHHcCCeEEEEECCHHHHhhCCEEEEccCcceEEEEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999777888
Q ss_pred EeeC-CCccHHHHHHHHHHHHhHhcCCCCCCCCceecC
Q 023788 241 IEFK-TGAQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 277 (277)
Q Consensus 241 i~~~-~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 277 (277)
+.++ +++||++++|++.|.++|+|+.+|.++|+++|+
T Consensus 366 ~~~~~g~~Gpvt~~L~~~l~~iq~G~~~~~~~W~~~v~ 403 (403)
T PLN02782 366 VSYGEGGFGTVSQQLYTVLTSLQMGLIEDNMNWTVELS 403 (403)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCCeEECC
Confidence 7443 457999999999999999999999999999884
No 3
>PLN02883 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=6.3e-59 Score=422.66 Aligned_cols=276 Identities=69% Similarity=1.110 Sum_probs=249.2
Q ss_pred CceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCcccCC
Q 023788 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAP 80 (277)
Q Consensus 1 ~~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~~~~ 80 (277)
||+||-.||++.+|++++|++||.+||++|+||.++.+++.+.+.++++.|+.|+|+...+.+|||+++.++++.+|+.+
T Consensus 108 ~kayr~~dG~i~lfr~~~h~~RL~~SA~rL~lp~~~~e~~~~~i~~lv~~n~~wvp~~~~~~lYIRp~v~~~~~~lG~~~ 187 (384)
T PLN02883 108 MKAYRGEDGRILLFRPELNAMRMKIGAERMCMHSPSVHQFIEGVKQTVLANRRWVPPPGKGSLYLRPLLFGSGASLGVAA 187 (384)
T ss_pred EEEEECCCCCEeeeChhHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhccccCCCCCCceEEEEEEEEecCCccCCCC
Confidence 57888889999999999999999999999999988899999999999999999998765668999999888776778877
Q ss_pred CCCcEEEEEEEecCccccCCCcCeEEEeeecccccCCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCCCeEEe
Q 023788 81 APEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEE 160 (277)
Q Consensus 81 ~~~~~~~i~~~p~~~~~~~g~~~i~l~~~~~~~r~~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~G~v~E 160 (277)
+.+++++|++.|+++++..|++++++.++..++|..|..++++|+.+||+.+++++++|+++|+||+||+|.+++|+|+|
T Consensus 188 ~~~~~~~i~~~p~~~y~~~g~~~v~l~~~~~~~Ra~~~g~g~~K~~~nYa~~lla~~eA~~~G~de~L~Ld~~~~~~V~E 267 (384)
T PLN02883 188 APEYTFLVFGSPVQNYFKEGTAALNLYVEEVIPRAYLGGTGGVKAISNYGPVLEVMRRAKSRGFSDVLYLDADTGKNIEE 267 (384)
T ss_pred CCCeEEEEEEEecccccccCcceEEEEECccccccCCCCCcccchhhhHHHHHHHHHHHHHCCCCEEEEEeCCCCCEEEE
Confidence 67788999999998877778778888777666788888899999988999999999999999999999999632369999
Q ss_pred eCceeEEEEECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEEEeeCCeE
Q 023788 161 VSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKR 240 (277)
Q Consensus 161 ~t~sNvf~v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~i~~~~~~ 240 (277)
++.+|||++++++|+||+++.+||+||||+.||++|+++|++|+|+.++++||.+|||+|+|||+.+|+||.+|++.++.
T Consensus 268 ~~~sNlF~v~~~~l~TP~l~~~iLpGITR~svl~la~~~G~~V~Er~i~~~eL~~AdEvF~tgTa~~I~PV~~I~~~~~~ 347 (384)
T PLN02883 268 VSAANIFLVKGNIIVTPATSGTILGGITRKSIIEIALDLGYKVEERRVPVEELKEAEEVFCTGTAAGVASVGSITFKNTR 347 (384)
T ss_pred cCcEEEEEEECCEEEeCCCcCCcCcCHHHHHHHHHHHHCCCeEEEEECCHHHHHhCCEeeeccChhheEEEEEEeccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999865554
Q ss_pred EeeCCCccHHHHHHHHHHHHhHhcCCCCCCCCceec
Q 023788 241 IEFKTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEI 276 (277)
Q Consensus 241 i~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 276 (277)
+.+..+.||++++|++.|.++|+|+.+|.++|+++|
T Consensus 348 ~~~~~~~G~vt~~L~~~l~~iq~G~~~d~~~W~~~~ 383 (384)
T PLN02883 348 TEYKVGDGIVTQQLRSILLGIQTGSIQDTKDWVLQI 383 (384)
T ss_pred eecccCCCHHHHHHHHHHHHHHcCCCCCCCCCeEeC
Confidence 322223589999999999999999999999999987
No 4
>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional
Probab=100.00 E-value=2e-57 Score=411.76 Aligned_cols=276 Identities=63% Similarity=1.110 Sum_probs=238.5
Q ss_pred CceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCcccCC
Q 023788 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAP 80 (277)
Q Consensus 1 ~~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~~~~ 80 (277)
||+|+..||++++|+|++|++||.+||+.|+|+.|+.+++++.+.+++++|+.++++...+.+|+|++++|+++..|+.+
T Consensus 76 ir~y~~~~G~i~lf~l~~Hl~RL~~Sa~~L~i~~p~~~~l~~~i~~lv~~n~~~i~~~~~~~~yir~~~~g~~~~~g~~~ 155 (355)
T PLN03117 76 LKAYRTEDGRITLFRPDQNALRMQTGADRLCMTPPSLEQFVEAVKQTVLANKKWVPPPGKGTLYIRPLLIGSGAVLGVAP 155 (355)
T ss_pred EEEEECCCCcEeeeCcHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccccCCCCCcEEEEEEEEEecCccCcCC
Confidence 46777779998889999999999999999999988899999999999999987666544567899988876665567666
Q ss_pred CCCcEEEEEEEecCccccCCCcCeEEEeeecccccCCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCCCeEEe
Q 023788 81 APEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEE 160 (277)
Q Consensus 81 ~~~~~~~i~~~p~~~~~~~g~~~i~l~~~~~~~r~~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~G~v~E 160 (277)
.+++.+++++.|.+.++. ..+++++.+++.++|..|+.++++|+++||+.+++|+++|+++|+||+|++|.+++|+|+|
T Consensus 156 ~~~~~~~i~~~p~~~~~~-~~~gi~l~~~~~~~r~~~~~l~~~K~~~nyl~~vla~~eA~~~G~deaL~ld~~~~g~v~E 234 (355)
T PLN03117 156 APEYTFLIYASPVGNYHK-ASSGLNLKVDHKHRRAHSGGTGGVKSCTNYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEE 234 (355)
T ss_pred CCCcEEEEEEEecccccc-CCCCEEEEEcCceEeCCCCCccchhhhhhhHHHHHHHHHHHHCCCCEEEEEeCCCCCEEEE
Confidence 556778888888765432 2245777665456777777889999966899999999999999999999999731369999
Q ss_pred eCceeEEEEECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEEEeeCCeE
Q 023788 161 VSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKR 240 (277)
Q Consensus 161 ~t~sNvf~v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~i~~~~~~ 240 (277)
++.+|||+++|++|+||+++.++|+||||+.|+++|+++|++|+|+.++++||.+|||+|+|||+.+|+||.+|++.++.
T Consensus 235 ~~~sNlF~v~~~~l~TP~l~~~iL~GItR~~vl~la~~~Gi~v~Er~i~~~eL~~AdEvFltnT~~~I~PV~~i~~~~~~ 314 (355)
T PLN03117 235 LSACNIFILKGNIVSTPPTSGTILPGVTRKSISELARDIGYQVEERDVSVDELLEAEEVFCTGTAVVVKAVETVTFHDKK 314 (355)
T ss_pred cCcEEEEEEECCEEEeCCCcCCCCCCHHHHHHHHHHHHCCCEEEEEEccHHHHhhCCEEEEccCcceEEEEEEEEecCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999865555
Q ss_pred EeeCCCccHHHHHHHHHHHHhHhcCCCCCCCCceecC
Q 023788 241 IEFKTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 277 (277)
Q Consensus 241 i~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 277 (277)
+.++...+|+|++|+++|.++++|+.++.++|+++|+
T Consensus 315 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~W~~~v~ 351 (355)
T PLN03117 315 VKYRTGEEALSTKLHLILTNIQMGVVEDKKGWMVEID 351 (355)
T ss_pred EEeCCCCChHHHHHHHHHHHHhCCCCCCCCCCEEEcc
Confidence 4455445899999999999999999999999999973
No 5
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family.
Probab=100.00 E-value=2.4e-55 Score=393.49 Aligned_cols=274 Identities=49% Similarity=0.860 Sum_probs=231.9
Q ss_pred CceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCC-CCccEEEEEEEEecCCCcccC
Q 023788 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPP-GKGSLYIRPLLVGSGPILGLA 79 (277)
Q Consensus 1 ~~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~-~~~~~~ir~~~~g~~~~~~~~ 79 (277)
||+|++.+|++++|+|++|++||.+||++|+|+.++.+++++.+.+++++++.+.+.. ..+.+|+|++++++++.+|+.
T Consensus 31 ir~~~~~~g~~~~~~l~~Hl~RL~~sa~~L~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ir~~v~~~~~~~g~~ 110 (313)
T TIGR01123 31 LKAYRCADGSIVLFRPDANAARLRRSARRLLMPELPDELFLEALRQLVKANKDWVPPYGSGASLYLRPFVIGTEPNLGVR 110 (313)
T ss_pred eeEEECCCCcEeeeChHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHccccCCCCCCCCcEEEEeEEEecCCccccC
Confidence 4566677999888999999999999999999987789999999999999887543211 134788998877665556776
Q ss_pred CCCCcEEEEEEEecCccccCCCcCeEEEeeecccccCCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCCCe--
Q 023788 80 PAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKN-- 157 (277)
Q Consensus 80 ~~~~~~~~i~~~p~~~~~~~g~~~i~l~~~~~~~r~~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~G~-- 157 (277)
+.+.+++++++.|++.++..|.+++++.+...+.|..+..++++||..||+.+++|+++|+++|+||+||+|+ +|+
T Consensus 111 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~K~~~nyl~~vla~~eA~~~g~deal~ld~--~g~g~ 188 (313)
T TIGR01123 111 PAPEYLFYVFASPVGAYFKGGLAPVSIFVTTEYDRAAPGGTGAVKVGGNYAASLLAQAKAAEQGCDQVVYLDP--VEHTY 188 (313)
T ss_pred CCCccEEEEEEEEchhhccccccceeEEecccceecCCCCCccceeccccHHHHHHHHHHHHCCCCEEEEEeC--CCCeE
Confidence 6556778888888766555565556655445566777766899999448999999999999999999999998 565
Q ss_pred EEeeCceeEEEEEC-CEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcc----cEEEEecCCCceEEEE
Q 023788 158 LEEVSSCNIFILKG-NIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEA----DEVFCTGTAVVVAPVG 232 (277)
Q Consensus 158 v~E~t~sNvf~v~~-g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~a----devfltns~~gi~pV~ 232 (277)
|+|++++|+|++++ |+|+|||++.++|+||||+.|+++|+++|++|+|++++++||.+| ||+|+|||+.||+||+
T Consensus 189 v~E~~~sNlf~v~~~g~l~Tp~l~~~~L~GItR~~vi~l~~~~Gi~v~e~~i~~~~l~~A~~~~devfltnS~~gi~PV~ 268 (313)
T TIGR01123 189 IEEVGAMNFFFITGDGELVTPPLSGSILPGITRDSLLQLAKDLGMEVEERRIDIDELKAFVEAGEEVFACGTAAVITPVG 268 (313)
T ss_pred EEEcCcEeEEEEEcCCEEEeCCCCCCCCcchHHHHHHHHHHHcCCeEEEEecCHHHHHHHHhcCCEEEEccCceEEEEEE
Confidence 99999999999985 799999999999999999999999999999999999999999999 9999999999999999
Q ss_pred EEeeCCeEEeeC-CCccHHHHHHHHHHHHhHhcCCCCCCCCceec
Q 023788 233 SITYRGKRIEFK-TGAQSVSRELYSTLVGIQTGLIKDNKGWTVEI 276 (277)
Q Consensus 233 ~i~~~~~~i~~~-~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 276 (277)
+|+.|++.+.++ +.+||++++|++.|.++++|+.+++.+|+++|
T Consensus 269 ~i~~d~~~~~~~~g~~g~~~~~l~~~~~~~~~~~~~~~~~w~~~~ 313 (313)
T TIGR01123 269 EIQHGGKEVVFASGQPGEVTKALYDELTDIQYGDFEDPYGWIVEV 313 (313)
T ss_pred EEEECCeEEEcCCCCCChHHHHHHHHHHHHhcCCCCCCCCCeeeC
Confidence 996557653333 45899999999999999999989999999986
No 6
>PRK13357 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=1.1e-54 Score=394.41 Aligned_cols=275 Identities=47% Similarity=0.827 Sum_probs=232.0
Q ss_pred CceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCC-CCCccEEEEEEEEecCCCcccC
Q 023788 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPP-PGKGSLYIRPLLVGSGPILGLA 79 (277)
Q Consensus 1 ~~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~-~~~~~~~ir~~~~g~~~~~~~~ 79 (277)
||+|+..+|++++|+|++|++||.+||+.|+|+.++.+++++.+.+++++|+.+.+. ...+.+|+|++++++++.+|+.
T Consensus 72 ir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~L~i~~~~~~~l~~~i~~li~~n~~~~~~~~~~~~~~ir~~v~rg~~~~g~~ 151 (356)
T PRK13357 72 LKAYRHKDGSIVLFRPDANAKRLQRSADRLLMPELPEELFLEAVKQLVKADRDWVPPYGEGASLYLRPFMIATEPFLGVK 151 (356)
T ss_pred EEEEEcCCCcEeeeChHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccccCCCCCCccEEEEEEEEccCCccccc
Confidence 345555689888899999999999999999998668999999999999998753211 1234789998777555456776
Q ss_pred CCCCcEEEEEEEecCccccCCCcCeEEEeeecccccCCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCCCeEE
Q 023788 80 PAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLE 159 (277)
Q Consensus 80 ~~~~~~~~i~~~p~~~~~~~g~~~i~l~~~~~~~r~~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~G~v~ 159 (277)
+...+++++++.|+++++..+.+++++.....+.|..++.++++||..||+.+++|++||+++|+||+||+|..++|+|+
T Consensus 152 ~~~~~~~~i~~~~~~~~~~~~~~~v~l~~~~~~~r~~~~~l~~~Kt~~nyl~~vla~~eA~~~G~deaL~ld~~~~G~V~ 231 (356)
T PRK13357 152 PAEEYIFCVIASPVGAYFKGGVKPVSIWVSDEYDRAAPGGTGAAKVGGNYAASLLAQAEAKEKGCDQVLYLDAVEHTYIE 231 (356)
T ss_pred CCCccEEEEEEEechhhcccCCCceEEEEcCCeEecCCCCcchhhcccccHHHHHHHHHHHHCCCCEEEEEcCCCCCEEE
Confidence 55567888888887765544556677765546677777778999994499999999999999999999999941169999
Q ss_pred eeCceeEEEEECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhh------HhcccEEEEecCCCceEEEEE
Q 023788 160 EVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDE------LLEADEVFCTGTAVVVAPVGS 233 (277)
Q Consensus 160 E~t~sNvf~v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~e------L~~adevfltns~~gi~pV~~ 233 (277)
|+++|||||+++++|+|||++.+||+||||+.|+++|+++|++|+|+.++++| |.+|||+|+|||+.||+||++
T Consensus 232 E~s~sNlF~v~~~~l~TPpl~~giL~GItR~~vlela~~~Gi~v~e~~i~~~el~~~~~L~~AdevFltnS~~gi~PV~~ 311 (356)
T PRK13357 232 EVGGMNFFFITKDGTVTPPLSGSILPGITRDSLLQLAEDLGLTVEERPVSIDEWQADAASGEFTEAFACGTAAVITPIGG 311 (356)
T ss_pred EcCcEEEEEEECCEEEECCCCCCCCcchHHHHHHHHHHHCCCeEEEEecCHHHhhhhhccCcceEEEEcccccEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred EeeC--CeEEeeCCCccHHHHHHHHHHHHhHhcCCCCCCCCceec
Q 023788 234 ITYR--GKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEI 276 (277)
Q Consensus 234 i~~~--~~~i~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 276 (277)
|+.+ +..++ .+.+||++++|++.|.+.++|+.+++.+|+++|
T Consensus 312 id~~~~~~~~~-~g~~g~~t~~L~~~~~~~~~~~~~~~~~w~~~~ 355 (356)
T PRK13357 312 IKYKDKEFVIG-DGEVGPVTQKLYDELTGIQFGDVEDPHGWIVKV 355 (356)
T ss_pred EEeCCCEEEcC-CCCCChHHHHHHHHHHHHhcCCCCCCCCCcEeC
Confidence 9743 23442 346899999999999999999989999999987
No 7
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.
Probab=100.00 E-value=4.9e-54 Score=382.77 Aligned_cols=259 Identities=32% Similarity=0.507 Sum_probs=221.3
Q ss_pred eEecCCC----cEeeeChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCcc
Q 023788 3 AYRKEDG----QLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILG 77 (277)
Q Consensus 3 ~~rv~~G----~~~~f~l~~Hl~RL~~sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~ 77 (277)
++|+.+| ++ |+|++|++||.+||+.|+|+.| +.+++++.+.+++++++. ..++||++++++.+.+|
T Consensus 30 t~r~~~g~~~~~~--~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i~~~~~-------~~~~ir~~v~rg~~~~g 100 (298)
T TIGR01122 30 GIRAYDTDKGPAI--FRLKEHIQRLYDSAKIYRMEIPYSKEELMEATRETLRKNNL-------RSAYIRPLVFRGDGDLG 100 (298)
T ss_pred EEEEEcCCCccee--eChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCC-------CCEEEEEEEEEccCCCC
Confidence 6788899 75 7889999999999999999976 789999999999998863 35788887765544567
Q ss_pred cCCC--CCcEEEEEEEecCccccCC--CcCeEEEeeecccccCCCC-CCCCccccCcHHHHHHHHHHHhcCCCeEEEEcc
Q 023788 78 LAPA--PEYTFLVFASPVGNYFKEG--LAPLNLYVEDEFHRATPGG-AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDS 152 (277)
Q Consensus 78 ~~~~--~~~~~~i~~~p~~~~~~~g--~~~i~l~~~~~~~r~~~~~-l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~ 152 (277)
+.++ ..+++++++.|++.++... .+++++.++ +++|..++. ++++||+|||+.+++|+++|+++|+||+||+|+
T Consensus 101 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~-~~~r~~~~~~~~~~K~~~~yl~~v~a~~~a~~~g~de~l~ld~ 179 (298)
T TIGR01122 101 LNPRAGYKPDVIIAAWPWGAYLGEEALEKGIDAKVS-SWRRNAPNTIPTAAKAGGNYLNSLLAKSEARRHGYDEAILLDV 179 (298)
T ss_pred cCCCCCCCceEEEEEeccccccCcccccCCeEEEEE-EEEcCCCCCcCccchhhhhhHHHHHHHHHHHHcCCCEEEEECC
Confidence 7653 3677888888875432110 135666664 456666554 489999866999999999999999999999997
Q ss_pred CCCCeEEeeCceeEEEEECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEE
Q 023788 153 VNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVG 232 (277)
Q Consensus 153 ~~~G~v~E~t~sNvf~v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~ 232 (277)
+|+|+|+++||||++++|+|+|||++.++|+||||+.|+++|+++|++|+|+.++++||.+|||+|+|||++||+||+
T Consensus 180 --~g~v~E~s~sNlf~v~~~~l~TP~~~~~~L~GItR~~il~la~~~g~~v~e~~i~~~eL~~adevfltns~~gv~PV~ 257 (298)
T TIGR01122 180 --EGYVAEGSGENIFIVKDGVLFTPPVTSSILPGITRDTVITLAKELGIEVVEQPISREELYTADEAFFTGTAAEITPIR 257 (298)
T ss_pred --CCCEEECCceEEEEEECCEEECCCCCCCcCcchHHHHHHHHHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcceEEEEE
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCeEEeeCCCccHHHHHHHHHHHHhHhcCCCCCCCCceec
Q 023788 233 SITYRGKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEI 276 (277)
Q Consensus 233 ~i~~~~~~i~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 276 (277)
+|+ ++.++ ++.+||++++|+++|.+.++++.+++++|+.+|
T Consensus 258 ~id--~~~~~-~~~~g~~~~~l~~~~~~~~~~~~~~~~~w~~~~ 298 (298)
T TIGR01122 258 EVD--GRKIG-NGRRGPVTKKLQEAFFDLVTGGTEDYWGWLTYV 298 (298)
T ss_pred EEC--CEECC-CCCCChHHHHHHHHHHHHHcCCCCCcCCCceeC
Confidence 996 67653 346899999999999999999889999999864
No 8
>KOG0975 consensus Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=6.7e-54 Score=375.15 Aligned_cols=272 Identities=57% Similarity=0.947 Sum_probs=256.0
Q ss_pred CceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCcccCC
Q 023788 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAP 80 (277)
Q Consensus 1 ~~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~~~~ 80 (277)
+||||..||++.+|+.++|++|+.+||.++.||.|+.+++.+.|.+++..++.|+|+...+.+|||+++.|++..+|..+
T Consensus 100 ~KAyRt~d~~i~LFrPd~N~~Rm~~sA~r~~lP~p~~~e~ie~i~~lv~~~~~wVP~~~~~SLyirp~l~Gt~~~Lgv~~ 179 (379)
T KOG0975|consen 100 LKAYRTEDGKIRLFRPDQNMDRMLRSAERACLPSPDVEEFIEAIKQLVLADKEWVPPPGKGSLYIRPLLIGTDPVLGVSP 179 (379)
T ss_pred cccccCCCCeEEEecchhhHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCcccCCCCCceEEEeeeeccCCccccccc
Confidence 68999999999999999999999999999999999989999999999999999999988899999999999998899988
Q ss_pred CCCcEEEEEEEecCccccCCCcCeEEEeeecccccCCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCCCeEEe
Q 023788 81 APEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEE 160 (277)
Q Consensus 81 ~~~~~~~i~~~p~~~~~~~g~~~i~l~~~~~~~r~~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~G~v~E 160 (277)
.+++++++++.|..+|+..|.+++.+.+++.++|.+|....+.|+.+||+++++++.||+.+||+++||++.. +++|+|
T Consensus 180 ~~e~~l~vi~spvg~yf~~g~~~v~L~v~~~~~Ra~pgg~g~~k~~~NY~P~vl~q~eA~~~G~~dvLwL~~d-~~~ItE 258 (379)
T KOG0975|consen 180 APEATLFVIVSPVGPYFKSGFKGVNLLVDPEFVRAWPGGTGGVKLGGNYAPNVLAQKEAKSKGASDVLWLDGD-GGYITE 258 (379)
T ss_pred CCcceEEEEEcccchhccccccceEEEEecceeecCCCCCCceeeccccchHHHHHHHHHhcCcceeEEEecC-CCceee
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999984 459999
Q ss_pred eCceeEEEEECCE--EEccCCCCCcccchHHHHHHHHHHhCC-CcEEEEecChhhHhcccEEEEecCCCceEEEEEEeeC
Q 023788 161 VSSCNIFILKGNI--ISTPATSGTILAGITRKSIIEIASDCG-FQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYR 237 (277)
Q Consensus 161 ~t~sNvf~v~~g~--l~TP~l~~~~L~GitR~~ll~~a~~~g-~~v~e~~i~~~eL~~adevfltns~~gi~pV~~i~~~ 237 (277)
..+.|||+|++|. ++|||+++.|||||||+.++|+|++.| ++|+||.++++|+.+|||+|.|+|+..|-||..|.+.
T Consensus 259 v~tmNiF~v~~n~~elvTPp~dg~ILpGvTR~sileLa~~~g~~~V~Er~vtv~e~~~A~Evf~tGTA~~v~pV~~i~~~ 338 (379)
T KOG0975|consen 259 VGTMNIFMVKKNEDELVTPPLDGTILPGVTRKSILELARDLGEFKVEERDVTVDELKTADEVFCTGTAAVVSPVGSILYK 338 (379)
T ss_pred ccceeEEEEEcCceeEecCCCCCcccCCccHHHHHHHHHHhCceEEEEEEEeHHHhhhhHhhhcccceeeeccccceeec
Confidence 9999999999998 999999999999999999999999999 9999999999999999999999999999999999876
Q ss_pred C----eEEeeCC-CccHHHHHHHHHHHHhHhcCCCCCCCCcee
Q 023788 238 G----KRIEFKT-GAQSVSRELYSTLVGIQTGLIKDNKGWTVE 275 (277)
Q Consensus 238 ~----~~i~~~~-~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~ 275 (277)
+ .+. +++ ..||++++|++.|.++|+|+ ++..+|+++
T Consensus 339 ~~~i~~~~-~~~g~~g~l~~~l~~~l~~iq~g~-~~~~~w~~~ 379 (379)
T KOG0975|consen 339 DEKIHIPT-IGEGKEGPLAKKLLSTLTDIQYGR-EPKKGWTVP 379 (379)
T ss_pred ccccceee-cCCCCccHHHHHHHHHHHHhhcCC-cCCCCcccC
Confidence 6 332 344 48999999999999999999 888999875
No 9
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=9.1e-53 Score=375.73 Aligned_cols=261 Identities=32% Similarity=0.505 Sum_probs=219.8
Q ss_pred eEecCCCc--EeeeChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCcccC
Q 023788 3 AYRKEDGQ--LVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLA 79 (277)
Q Consensus 3 ~~rv~~G~--~~~f~l~~Hl~RL~~sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~~~ 79 (277)
++|+.+|+ .++|+|++|++||.+||+.|+|+.| +.+++++.+.+++++++. ...+||++++++.+.+|+.
T Consensus 39 tir~~~g~~~~~~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i~~~~~-------~~~~ir~~v~rg~~~~g~~ 111 (306)
T PRK06606 39 GIRAYDTPKGPAIFRLREHTKRLFNSAKILRMEIPYSVDELMEAQREVVRKNNL-------KSAYIRPLVFVGDEGLGVR 111 (306)
T ss_pred EEEEecCCCCCeeeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCC-------CCEEEEEEEEecCCccCcC
Confidence 56777776 1137899999999999999999977 789999999999998863 3678888776554456766
Q ss_pred CC-CCcEEEEEEEecCcccc-CCC-cCeEEEeeecccccCCCC-CCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCC
Q 023788 80 PA-PEYTFLVFASPVGNYFK-EGL-APLNLYVEDEFHRATPGG-AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNK 155 (277)
Q Consensus 80 ~~-~~~~~~i~~~p~~~~~~-~g~-~~i~l~~~~~~~r~~~~~-l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~ 155 (277)
+. ..+++++.+.|++.++. .+. +++++.++ ++.|..++. ++++|+..||+.+++|+++|+++|+||+||+|+ +
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~~K~~~nyl~~vla~~ea~~~G~de~l~l~~--~ 188 (306)
T PRK06606 112 PHGLPTDVAIAAWPWGAYLGEEALEKGIRVKVS-SWTRHAPNSIPTRAKASGNYLNSILAKTEARRNGYDEALLLDV--E 188 (306)
T ss_pred CCCCCceEEEEEeccccccCcccccCCeEEEEe-eEecCCCCCcCcchhhhhccHHHHHHHHHHHHcCCCEEEEECC--C
Confidence 44 35677788877654321 111 35666654 456665554 588997559999999999999999999999998 7
Q ss_pred CeEEeeCceeEEEEECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEEEe
Q 023788 156 KNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSIT 235 (277)
Q Consensus 156 G~v~E~t~sNvf~v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~i~ 235 (277)
|+|+|+++|||||+++|+|+|||++.|+|+||||+.++++|+++|++|+|+.++++||.+|||+|+|||++||+||.+|+
T Consensus 189 g~v~E~~~sNlf~v~~~~l~TP~~~~giL~GitR~~vl~~~~~~g~~v~e~~i~~~eL~~AdevfltnS~~gi~PV~~id 268 (306)
T PRK06606 189 GYVSEGSGENIFIVRDGVLYTPPLTSSILEGITRDTVITLAKDLGIEVIERRITRDELYIADEVFFTGTAAEVTPIREVD 268 (306)
T ss_pred CCEEEcCceEEEEEECCEEECCCCcCCcCCCHHHHHHHHHHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcceEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred eCCeEEeeCCCccHHHHHHHHHHHHhHhcCCCCCCCCceec
Q 023788 236 YRGKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEI 276 (277)
Q Consensus 236 ~~~~~i~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 276 (277)
++.++ ++.+||++++|+++|.+.+.++.+|+.+|+.++
T Consensus 269 --~~~~~-~g~~g~~~~~L~~~~~~~~~~~~~~~~~~~~~~ 306 (306)
T PRK06606 269 --GRQIG-NGKRGPITEKLQSAYFDIVRGRTEKYAHWLTPV 306 (306)
T ss_pred --cEECC-CCCCCHHHHHHHHHHHHHHcCCCCCCCCCcccC
Confidence 77753 346899999999999999999889999999874
No 10
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=100.00 E-value=4.9e-52 Score=366.35 Aligned_cols=256 Identities=48% Similarity=0.781 Sum_probs=214.6
Q ss_pred eEecCC---CcEeeeChhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCcccC
Q 023788 3 AYRKED---GQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLA 79 (277)
Q Consensus 3 ~~rv~~---G~~~~f~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~~~ 79 (277)
++|+.+ |+.++|+|++|++||.+||+.|+|+.++.+++.+.+.+++++|+.++|.....+++||++++++.+.+|+.
T Consensus 18 tir~~~~~~g~g~~~~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~~i~~~~~~~~~~~~~~~~ir~~v~rg~~~~g~~ 97 (279)
T cd01557 18 GLKAYRTPDGKIVLFRPDENAERLNRSARRLGLPPFSVEEFIDAIKELVKLDADWVPYGGGASLYIRPFIFGTDPQLGVS 97 (279)
T ss_pred eEEEEecCCCCEeEECHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCCCEEEEEEEEeccccCCcC
Confidence 455656 43346899999999999999999994489999999999999987665543345788998877655456776
Q ss_pred CCCCcEEEEEEEecCccccCCCcCeEEEeeecccccCCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCC-CeE
Q 023788 80 PAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNK-KNL 158 (277)
Q Consensus 80 ~~~~~~~~i~~~p~~~~~~~g~~~i~l~~~~~~~r~~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~-G~v 158 (277)
++..+++++++.|+++++....+++++.++ +++|..|..+..+|+..||+.+++|+++|+++|+||+||+|+ + |+|
T Consensus 98 ~~~~~~~~i~~~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~K~~~nyl~~vla~~eA~~~g~de~l~ld~--~~g~v 174 (279)
T cd01557 98 PALEYLFAVFASPVGAYFKGGEKGVSALVS-SFRRAAPGGPGAAKAGGNYAASLLAQKEAAEKGYDQALWLDG--AHGYV 174 (279)
T ss_pred CCCccEEEEEEEEccccccCCCCCeEEEEe-eEEcCCCCCCcccchhhccHHHHHHHHHHHHCCCCEEEEEcC--CCCEE
Confidence 545677888888876554322345666654 566766655678997459999999999999999999999998 6 999
Q ss_pred EeeCceeEEEEECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEEEeeCC
Q 023788 159 EEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRG 238 (277)
Q Consensus 159 ~E~t~sNvf~v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~i~~~~ 238 (277)
+|++++||||+++|+|+|||++.++|+||||+.++++|+++|++|+|+.++++||.+|||+|+|||+.||+||++|+ +
T Consensus 175 ~E~~~sNlf~v~~~~l~TP~~~~~~L~Gitr~~v~~~~~~~Gi~v~e~~i~~~~l~~ade~f~~ns~~gi~pV~~i~--~ 252 (279)
T cd01557 175 AEVGTMNIFFVKDGELITPPLDGSILPGITRDSILELARDLGIKVEERPITRDELYEADEVFATGTAAVVTPVGEID--Y 252 (279)
T ss_pred EEeCcEEEEEEECCEEEcCCCcCCCCCchHHHHHHHHHHHcCCeEEEEeCCHHHHhhCCEEEEecceeEEEEEEEEc--c
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999996 6
Q ss_pred eEE--eeCCCccHHHHHHHHHHHHhHhc
Q 023788 239 KRI--EFKTGAQSVSRELYSTLVGIQTG 264 (277)
Q Consensus 239 ~~i--~~~~~~g~~~~~l~~~~~~~~~~ 264 (277)
+.+ + .+.+||++++|++.|.+.++|
T Consensus 253 ~~~~~~-~~~~gp~~~~l~~~~~~~~~~ 279 (279)
T cd01557 253 RGKEPG-EGEVGPVTKKLYDLLTDIQYG 279 (279)
T ss_pred ccccCC-CCCCCHHHHHHHHHHHHHhcC
Confidence 654 2 246899999999999998876
No 11
>PRK12479 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=4.6e-50 Score=357.12 Aligned_cols=246 Identities=27% Similarity=0.393 Sum_probs=208.5
Q ss_pred ceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCcccCC
Q 023788 2 KAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAP 80 (277)
Q Consensus 2 ~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~~~~ 80 (277)
.++|+++|++ |+|++|++||.+||+.|+|+.| +.+++++.+.+++++++. ...+||++++++++.+|+.+
T Consensus 35 Et~r~~~g~~--~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~~i~~~~~-------~~~~ir~~v~rg~g~~g~~~ 105 (299)
T PRK12479 35 EGIRSYGGNV--FCLKEHVKRLYESAKSILLTIPLTVDEMEEAVLQTLQKNEY-------ADAYIRLIVSRGKGDLGLDP 105 (299)
T ss_pred EEEEEECCEe--cCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-------CCeEEEEEEEecCCCCCCCC
Confidence 4678999986 7889999999999999999877 799999999999998763 35678877765444567665
Q ss_pred C--CCcEEEEEEEecCcc----ccCCCcCeEEEeeecccccCCCCC-CCCccccCcHHHHHHHHHHHhcCCCeEEEEccC
Q 023788 81 A--PEYTFLVFASPVGNY----FKEGLAPLNLYVEDEFHRATPGGA-GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSV 153 (277)
Q Consensus 81 ~--~~~~~~i~~~p~~~~----~~~g~~~i~l~~~~~~~r~~~~~l-~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~ 153 (277)
. ..+++++++.|++.+ +.+| +++.+. .++|..|+.+ +++||+ ||+.+++++++|+++|+||+||+|+
T Consensus 106 ~~~~~~~~~i~~~~~~~~~~~~~~~g---v~~~~~-~~~r~~~~~~~~~~K~~-nyl~~vla~~ea~~~g~de~l~ld~- 179 (299)
T PRK12479 106 RSCVKPSVIIIAEQLKLFPQEFYDNG---LSVVSV-ASRRNTPDALDPRIKSM-NYLNNVLVKIEAAQAGVLEALMLNQ- 179 (299)
T ss_pred ccCCCceEEEEEEEcccCChhHHhCC---eEEEEE-eEeccCCCccCccchhh-hhHHHHHHHHHHHHcCCCEEEEEcC-
Confidence 3 357888888887532 2334 445443 3566655544 689996 9999999999999999999999998
Q ss_pred CCCeEEeeCceeEEEEECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEE
Q 023788 154 NKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGS 233 (277)
Q Consensus 154 ~~G~v~E~t~sNvf~v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~ 233 (277)
+|+|+|++++|||++++|+|+|||++.|+|+||||+.|+++|+++|++|+|+.++++||.+|||+|+|||++||+||.+
T Consensus 180 -~g~v~E~s~sNlf~v~~~~l~TP~l~~giL~GItR~~il~~~~~~g~~v~e~~i~~~~L~~adevfltnS~~gi~PV~~ 258 (299)
T PRK12479 180 -QGYVCEGSGDNVFVVKDGKVLTPPSYLGALEGITRNSVIELCERLSIPCEERPFTRHDVYVADEVFLTGTAAELIPVVK 258 (299)
T ss_pred -CCcEEECCceEEEEEECCEEEeCCCcCCCCcCHHHHHHHHHHHHcCCeEEEEeCCHHHHHhCCeeeeecCcccEEEEEE
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCeEEeeCCCccHHHHHHHHHHHHhHhcCC
Q 023788 234 ITYRGKRIEFKTGAQSVSRELYSTLVGIQTGLI 266 (277)
Q Consensus 234 i~~~~~~i~~~~~~g~~~~~l~~~~~~~~~~~~ 266 (277)
|+ ++.++ .+.+||++++|+++|.+.+++..
T Consensus 259 id--~~~~~-~~~~g~~~~~l~~~~~~~~~~~~ 288 (299)
T PRK12479 259 VD--SREIG-DGKPGSVTKQLTEEFKKLTRERG 288 (299)
T ss_pred EC--CEEcC-CCCcCHHHHHHHHHHHHHHhhcC
Confidence 95 77753 44679999999999998777643
No 12
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional
Probab=100.00 E-value=1.2e-49 Score=352.15 Aligned_cols=243 Identities=24% Similarity=0.310 Sum_probs=204.2
Q ss_pred ceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCcccCC
Q 023788 2 KAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAP 80 (277)
Q Consensus 2 ~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~~~~ 80 (277)
.++|+++|++ |+|++|++||.+||+.|+|+.+ +.+.+++.+.+++++++. ...+||++++++.+..++.+
T Consensus 31 Et~r~~~g~~--~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~l~~~~~~~~~-------~~~~iRl~v~rg~~~~~~~~ 101 (283)
T PRK07650 31 ETFRIYNGHP--FLLDDHYDRLNDALDTLQIEWTMTKDEVLLILKNLLEKNGL-------ENAYVRFNVSAGIGEIGLQT 101 (283)
T ss_pred EEEEEECCEE--EcHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCC-------CcEEEEEEEEeCCCCCCCCC
Confidence 4678899996 6789999999999999999976 789999999999988763 45788887765433455554
Q ss_pred C--CCcEEEEEEEecCccc-cCCCcCeEEEeeecccccCCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCCCe
Q 023788 81 A--PEYTFLVFASPVGNYF-KEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKN 157 (277)
Q Consensus 81 ~--~~~~~~i~~~p~~~~~-~~g~~~i~l~~~~~~~r~~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~G~ 157 (277)
. ..++++++..|+++.. .....++.+ .+.|..++.++++||+ ||+.+++++++|+++|+||+||+|+ +|+
T Consensus 102 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~Kt~-~y~~~v~a~~~a~~~g~de~llln~--~G~ 174 (283)
T PRK07650 102 EMYEEPTVIVYMKPLAPPGLPAEKEGVVL----KQRRNTPEGAFRLKSH-HYLNNILGKREIGNDPNKEGIFLTE--EGY 174 (283)
T ss_pred CCCCCCEEEEEEEcCCCCChhhcCeEEEE----EEEecCCCCCcchhHH-hHHHHHHHHHHHHHcCCCeEEEECC--CCe
Confidence 3 4677888888875321 111122222 2345556678899997 9999999999999999999999997 799
Q ss_pred EEeeCceeEEEEECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEEEeeC
Q 023788 158 LEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYR 237 (277)
Q Consensus 158 v~E~t~sNvf~v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~i~~~ 237 (277)
|+|++++|||++++|+|+|||+++|+|+||||+.++++|++.|++|+|+.++++||.+|||+|+|||++||+||.+|+
T Consensus 175 v~E~s~sNif~v~~g~l~TP~l~~g~L~GitR~~li~~~~~~g~~v~e~~i~~~dL~~adeifl~ns~~gv~pV~~i~-- 252 (283)
T PRK07650 175 VAEGIVSNLFWVKGDIVYTPSLETGILNGITRAFVIKVLEELGIEVKEGFYTKEELLSADEVFVTNSIQEIVPLTRIE-- 252 (283)
T ss_pred EEEcCceEEEEEECCEEEcCCCcCCCcccHHHHHHHHHHHHcCCeEEEEecCHHHHhhCCEeeeecCcccEEEEEEEC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred CeEEeeCCCccHHHHHHHHHHHHhHhc
Q 023788 238 GKRIEFKTGAQSVSRELYSTLVGIQTG 264 (277)
Q Consensus 238 ~~~i~~~~~~g~~~~~l~~~~~~~~~~ 264 (277)
++.+ ++++||+++.|+++|.+.+..
T Consensus 253 ~~~~--~g~~g~~~~~l~~~~~~~~~~ 277 (283)
T PRK07650 253 ERDF--PGKVGMVTKRLQNLYEMQREK 277 (283)
T ss_pred CEEe--CCCCCHHHHHHHHHHHHHHHh
Confidence 6665 567899999999999886654
No 13
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=100.00 E-value=1.8e-49 Score=346.28 Aligned_cols=241 Identities=42% Similarity=0.639 Sum_probs=201.1
Q ss_pred ceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCcccCC
Q 023788 2 KAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAP 80 (277)
Q Consensus 2 ~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~~~~ 80 (277)
.++|+.+|++ |+|++|++||.+||+.|+|+.+ +.+++++.+.+++++++. +..+||+.++++.+..++.+
T Consensus 12 Et~r~~~g~~--~~l~~Hl~RL~~sa~~l~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~ir~~v~~g~~~~~~~~ 82 (256)
T cd00449 12 EGLRAGKGRL--FRLDEHLDRLNRSAKRLGLPIPYDREELREALKELVAANNG-------ASLYIRPLLTRGVGGLGVAP 82 (256)
T ss_pred EEEEEcCcEE--EChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCC-------CCEEEEEEEEecccccCCCC
Confidence 4678999996 7889999999999999999954 899999999999988652 46678877765544556643
Q ss_pred --CCCcEEEEEEEecCccccCCCcCeEEEeeeccccc-CCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCCCe
Q 023788 81 --APEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRA-TPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKN 157 (277)
Q Consensus 81 --~~~~~~~i~~~p~~~~~~~g~~~i~l~~~~~~~r~-~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~G~ 157 (277)
...+++++++.|++++......++++.+++. .+. .++.++++||+ ||+.+++++++|+++|+||+||+|+ +|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~Kt~-~~~~~~~a~~~a~~~g~de~llld~--~g~ 158 (256)
T cd00449 83 PPSPEPTFVVFASPVGAYAKGGEKGVRLITSPD-RRRAAPGGTGDAKTG-GNLNSVLAKQEAAEAGADEALLLDD--NGY 158 (256)
T ss_pred CCCCCcEEEEEEeeccccccccCCCeEEEEeee-EEeCCCCCCccchhh-CCHHHHHHHHHHHHcCCCEEEEECC--CCc
Confidence 3467888888887643111124566666543 343 45568999997 7788899999999999999999997 699
Q ss_pred EEeeCceeEEEEECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEEEeeC
Q 023788 158 LEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYR 237 (277)
Q Consensus 158 v~E~t~sNvf~v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~i~~~ 237 (277)
|+||++||+||+++|+|+||+++.|+|+||||+.++++|+++|++|+|+.++++||.+|||+|+|||++||+||.+|+
T Consensus 159 v~E~s~sNlf~~~~~~l~TP~~~~g~L~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gv~pV~~i~-- 236 (256)
T cd00449 159 VTEGSASNVFIVKDGELVTPPLDGGILPGITRDSVIELAKELGIKVEERPISLDELYAADEVFLTGTAAEVTPVTEID-- 236 (256)
T ss_pred EEEcCceEEEEEECCEEEeCCCCCCcCcchhHHHHHHHHHHcCCeEEEEecCHHHHhhCCEEEEccccceEEEEEEEC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CeEEeeCCCccHHHHHHHHHH
Q 023788 238 GKRIEFKTGAQSVSRELYSTL 258 (277)
Q Consensus 238 ~~~i~~~~~~g~~~~~l~~~~ 258 (277)
++.++ .+.+||++++|+++|
T Consensus 237 ~~~~~-~~~~~~~~~~l~~~~ 256 (256)
T cd00449 237 GRGIG-DGKPGPVTRKLRELL 256 (256)
T ss_pred CeecC-CCCCCHHHHHHHHhC
Confidence 66652 346899999998865
No 14
>PRK08320 branched-chain amino acid aminotransferase; Reviewed
Probab=100.00 E-value=2.9e-49 Score=350.59 Aligned_cols=243 Identities=30% Similarity=0.479 Sum_probs=203.7
Q ss_pred ceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCcccCC
Q 023788 2 KAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAP 80 (277)
Q Consensus 2 ~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~~~~ 80 (277)
.+++++||++ |+|++|++||.+||+.|+|+.| +.+++++.+.+++++++. ...+||+.++++++.+|+.+
T Consensus 34 Et~~v~~g~~--~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~~i~~~~~-------~~~~iri~v~rg~g~~g~~~ 104 (288)
T PRK08320 34 EGIRAYNGRV--FRLKEHIDRLYDSAKAIMLEIPLSKEEMTEIVLETLRKNNL-------RDAYIRLVVSRGVGDLGLDP 104 (288)
T ss_pred EEEEEECCEe--ecHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCC-------CCEEEEEEEEECCCcCCCCc
Confidence 4778999986 7889999999999999999877 789999999999998763 35678877765544567765
Q ss_pred C--CCcEEEEEEEecCcc----ccCCCcCeEEEeeecccccCCCC-CCCCccccCcHHHHHHHHHHHhcCCCeEEEEccC
Q 023788 81 A--PEYTFLVFASPVGNY----FKEGLAPLNLYVEDEFHRATPGG-AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSV 153 (277)
Q Consensus 81 ~--~~~~~~i~~~p~~~~----~~~g~~~i~l~~~~~~~r~~~~~-l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~ 153 (277)
. ..+.+++++.|.+.+ +.+| +++... .+.|..++. .+++||+ ||+.+++++++|+++|+||+||+|+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~-~~~r~~~~~~~~~~K~~-nyl~~v~a~~~A~~~g~de~L~ld~- 178 (288)
T PRK08320 105 RKCPKPTVVCIAEPIGLYPGELYEKG---LKVITV-STRRNRPDALSPQVKSL-NYLNNILAKIEANLAGVDEAIMLND- 178 (288)
T ss_pred ccCCCceEEEEEEEcCcCChhHHhcC---eEEEEE-eeeccCCCCcCccchhh-hhHHHHHHHHHHHHcCCCEEEEECC-
Confidence 3 356677777776432 2234 444433 345655544 4789997 9999999999999999999999998
Q ss_pred CCCeEEeeCceeEEEEECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEE
Q 023788 154 NKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGS 233 (277)
Q Consensus 154 ~~G~v~E~t~sNvf~v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~ 233 (277)
+|+|+|+++||||++++|+|+|||++.++|+||||+.++++|+++|++|+|+.++++||.+|||+|+|||++||+||.+
T Consensus 179 -~g~v~E~s~sNlf~~~~~~l~TP~~~~~~L~GitR~~ll~~~~~~g~~v~e~~l~~~dL~~ade~f~~ns~~gv~pV~~ 257 (288)
T PRK08320 179 -EGYVAEGTGDNIFIVKNGKLITPPTYAGALEGITRNAVIEIAKELGIPVREELFTLHDLYTADEVFLTGTAAEVIPVVK 257 (288)
T ss_pred -CCeEEEcCcEEEEEEECCEEECCCCcCCCCcCHHHHHHHHHHHHcCCeEEEEECCHHHHHhCCEEEEecChhhEEEEEE
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCeEEeeCCCccHHHHHHHHHHHHhHh
Q 023788 234 ITYRGKRIEFKTGAQSVSRELYSTLVGIQT 263 (277)
Q Consensus 234 i~~~~~~i~~~~~~g~~~~~l~~~~~~~~~ 263 (277)
|+ ++.++ .+++||++++|++.|.+.+.
T Consensus 258 i~--~~~~~-~~~~g~~~~~l~~~~~~~~~ 284 (288)
T PRK08320 258 VD--GRVIG-DGKPGPITKKLLEEFRELTK 284 (288)
T ss_pred EC--CEECC-CCCcCHHHHHHHHHHHHHHh
Confidence 95 66652 44689999999999987654
No 15
>PRK07544 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=2.4e-49 Score=351.60 Aligned_cols=246 Identities=28% Similarity=0.441 Sum_probs=203.6
Q ss_pred ceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCcccCC
Q 023788 2 KAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAP 80 (277)
Q Consensus 2 ~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~~~~ 80 (277)
.++|+++|++ |+|++|++||++||+.|+|+.| +.+.+.+.+.++++.++. ...+||++++++.+.+|+.+
T Consensus 40 Et~r~~~g~~--~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i~~~~~-------~~~~ir~~v~rg~~~~g~~~ 110 (292)
T PRK07544 40 EGERAYGGKI--FKLREHSERLRRSAELLDFEIPYSVAEIDAAKKETLAANGL-------TDAYVRPVAWRGSEMMGVSA 110 (292)
T ss_pred EeeEeeCCcc--cChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCC-------CCeEEEEEEEecCCCCCcCC
Confidence 3678999996 7889999999999999999977 789999999999998863 35688877765544566654
Q ss_pred C-CCcEEEEEEEecCccc--cCCCcCeEEEeeecccccCCCCC-CCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCCC
Q 023788 81 A-PEYTFLVFASPVGNYF--KEGLAPLNLYVEDEFHRATPGGA-GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKK 156 (277)
Q Consensus 81 ~-~~~~~~i~~~p~~~~~--~~g~~~i~l~~~~~~~r~~~~~l-~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~G 156 (277)
+ ..+.+++...|.+.++ ..+.+++++.++ .++|..|..+ ..+|+.+||+.+++++++|+++|+||+||+|+ +|
T Consensus 111 ~~~~~~~~v~~~~~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~~k~~~~yl~~vla~~~A~~~G~deal~ld~--~g 187 (292)
T PRK07544 111 QQNKIHLAIAAWEWPSYFDPEAKMKGIRLDIA-KWRRPDPETAPSAAKAAGLYMICTISKHAAEAKGYADALMLDY--RG 187 (292)
T ss_pred CCCCcEEEEEEeccccccCccccCCCEEEEEe-EEEcCCCCCcCHhhhhhcccHHHHHHHHHHHHcCCCeEEEECC--CC
Confidence 3 3455666665554322 122346777654 4566655543 45688778999999999999999999999998 79
Q ss_pred eEEeeCceeEEEEECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEEEee
Q 023788 157 NLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITY 236 (277)
Q Consensus 157 ~v~E~t~sNvf~v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~i~~ 236 (277)
+|+|+++||+||++||+|+||+++ ++|+||||+.|+++|+++|++|+|++++++||.+|||+|+|||++||+||++|+
T Consensus 188 ~V~E~~~sNlf~v~~~~l~TP~~~-~~L~GItR~~vl~~a~~~g~~v~e~~i~~~eL~~adevfltnS~~gi~PV~~i~- 265 (292)
T PRK07544 188 YVAEATGANIFFVKDGVIHTPTPD-CFLDGITRQTVIELAKRRGIEVVERHIMPEELAGFSECFLTGTAAEVTPVSEIG- 265 (292)
T ss_pred CEEEcCceEEEEEECCEEECCCCc-ccccchhHHHHHHHHHHcCCeEEEEecCHHHHhhcCceeecCccceEEEEEEEe-
Confidence 999999999999999999999986 599999999999999999999999999999999999999999999999999996
Q ss_pred CCeEEeeCCCccHHHHHHHHHHHHhHhcCC
Q 023788 237 RGKRIEFKTGAQSVSRELYSTLVGIQTGLI 266 (277)
Q Consensus 237 ~~~~i~~~~~~g~~~~~l~~~~~~~~~~~~ 266 (277)
++.+ .+||++++|++.|.+.++++.
T Consensus 266 -~~~~----~~g~~~~~l~~~~~~~~~~~~ 290 (292)
T PRK07544 266 -EYRF----TPGAITRDLMDDYEALVRPRA 290 (292)
T ss_pred -eEEe----CCChHHHHHHHHHHHHHhccc
Confidence 6654 379999999999988776653
No 16
>PRK13356 aminotransferase; Provisional
Probab=100.00 E-value=3.7e-49 Score=349.37 Aligned_cols=242 Identities=26% Similarity=0.385 Sum_probs=198.8
Q ss_pred ceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEec-CCCcccC
Q 023788 2 KAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGS-GPILGLA 79 (277)
Q Consensus 2 ~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~-~~~~~~~ 79 (277)
.++|+.+|++ |+|++|++||.+||+.|+|+.+ +.+++++.+.+++++++. ...++||++++++ +...++.
T Consensus 38 Etir~~~g~~--~~l~~Hl~RL~~Sa~~L~i~~~~~~~~l~~~i~~~i~~~~~------~~~~~ir~~v~rg~g~~~~~~ 109 (286)
T PRK13356 38 DGARAFEGVT--PDLDLHCARVNRSAEALGLKPTVSAEEIEALAREGLKRFDP------DTALYIRPMYWAEDGFASGVA 109 (286)
T ss_pred EEEEEecCCC--CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC------CCcEEEEEEEEeccCcccCcC
Confidence 3678889996 6789999999999999999866 799999999999998753 2357888776544 3222333
Q ss_pred CC-CCcEEEEEEEecCccccCCCcCeEEEeeecccccCCCC-CCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCCCe
Q 023788 80 PA-PEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGG-AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKN 157 (277)
Q Consensus 80 ~~-~~~~~~i~~~p~~~~~~~g~~~i~l~~~~~~~r~~~~~-l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~G~ 157 (277)
+. ..+.+++...+.+.... +++++.++ +++|..+.. ..++|+++||+.+++|+++|+++|+||+||+|+ +|+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~---~gv~l~~~-~~~r~~~~~~~~~~K~~~nyl~~vla~~ea~~~g~deal~ld~--~G~ 183 (286)
T PRK13356 110 PDPESTRFALCLEEAPMPEP---TGFSLTLS-PFRRPTLEMAPTDAKAGCLYPNNARALREARSRGFDNALVLDM--LGN 183 (286)
T ss_pred CCcCCceEEEEEEccCCCCC---CcEEEEEe-eeecCCCCCCCccceeccchHHHHHHHHHHHHcCCCEEEEECC--CCC
Confidence 33 23444555554433212 34666654 456655443 367897779999999999999999999999997 799
Q ss_pred EEeeCceeEEEEECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEEEeeC
Q 023788 158 LEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYR 237 (277)
Q Consensus 158 v~E~t~sNvf~v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~i~~~ 237 (277)
|+|+++|||||+++|+|+||+++.++|+||||+.|+++|+++|++|+|++++++||.+|||+|+|||+.||+||++|+
T Consensus 184 v~E~~~sNlf~v~~~~l~TP~~~~~~L~GItR~~vi~~a~~~gi~v~e~~i~~~eL~~adevfltns~~gi~PV~~id-- 261 (286)
T PRK13356 184 VAETATSNVFMVKDGVVFTPVPNGTFLNGITRQRVIALLREDGVTVVETTLTYEDFLEADEVFSTGNYSKVVPVTRFD-- 261 (286)
T ss_pred EEEcCceEEEEEECCEEEcCCCCCCcccCHHHHHHHHHHHHcCCeEEEEecCHHHHHhcCceEEecChheEEEEEEEC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred CeEEeeCCCccHHHHHHHHHHHHhHh
Q 023788 238 GKRIEFKTGAQSVSRELYSTLVGIQT 263 (277)
Q Consensus 238 ~~~i~~~~~~g~~~~~l~~~~~~~~~ 263 (277)
++.+ .+||++++|+++|.+.++
T Consensus 262 ~~~~----~~g~~~~~l~~~~~~~~~ 283 (286)
T PRK13356 262 DRSL----QPGPVTRRARELYWDWAH 283 (286)
T ss_pred CEEe----cCChHHHHHHHHHHHHHh
Confidence 7764 369999999999988665
No 17
>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate. Based on the information available from the crystal structure, most members of this subgroup are likely to function as dimers. The enzyme from E.Coli, the structure of which is available, is a homodimer that is folded into a small and a larger domain. The coenzyme pyridoxal 5; -phosphate resides at the interface of the two domains that is linked by a flexible loop. Members of this subgroup are found in Eukaryotes and bacteria.
Probab=100.00 E-value=4.9e-49 Score=342.19 Aligned_cols=235 Identities=30% Similarity=0.441 Sum_probs=198.5
Q ss_pred ceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCcccCC-
Q 023788 2 KAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAP- 80 (277)
Q Consensus 2 ~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~~~~- 80 (277)
.++|+++|++ |+|++|++||.+||+.|+|+.++.+++++.+.+++++++. +..+||++++.+++..++.+
T Consensus 12 Et~~~~~g~~--~~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~i~~~i~~~~~-------~~~~ir~~v~rg~~~~~~~~~ 82 (249)
T cd01559 12 ETMRALDGRL--FLLDAHLARLERSARRLGIPEPDLPRLRAALESLLAANDI-------DEGRIRLILSRGPGGRGYAPS 82 (249)
T ss_pred EEEEEECCEE--ccHHHHHHHHHHHHHhcCcCCCCHHHHHHHHHHHHHhCCC-------CceEEEEEEecCCCCCCCCCC
Confidence 4678899986 7889999999999999999944899999999999998763 35678877664333345543
Q ss_pred -CCCcEEEEEEEecCc-cccCCCcCeEEEeeecccccCCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCCCeE
Q 023788 81 -APEYTFLVFASPVGN-YFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNL 158 (277)
Q Consensus 81 -~~~~~~~i~~~p~~~-~~~~g~~~i~l~~~~~~~r~~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~G~v 158 (277)
...+++++++.|++. .+. +++++.++ ++++..++.++++||+ ||+.+++|+++|+++|+||+||+|+ +|+|
T Consensus 83 ~~~~~~~~i~~~~~~~~~~~---~gv~l~~~-~~~~~~~~~~~~~Kt~-ny~~~~~a~~~a~~~g~de~l~l~~--~g~v 155 (249)
T cd01559 83 VCPGPALYVSVIPLPPAWRQ---DGVRLITC-PVRLGEQPLLAGLKHL-NYLENVLAKREARDRGADEALFLDT--DGRV 155 (249)
T ss_pred CCCCCEEEEEeccCCHHHHh---CCcEEEEc-ccccCCCCCCCCcchh-hhHHHHHHHHHHHhcCCCEEEEEcC--CCCE
Confidence 346678888887653 122 34556554 3566566789999996 9999999999999999999999998 7999
Q ss_pred EeeCceeEEEEECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEEEeeCC
Q 023788 159 EEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRG 238 (277)
Q Consensus 159 ~E~t~sNvf~v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~i~~~~ 238 (277)
+|++++|||++++|+|+|||++.|+|+||||+.++++|+++|++++|+.++++||.+|||+|+|||++||+||++|+ +
T Consensus 156 ~E~~~~Nif~~~~~~~~TP~~~~g~L~Gitr~~~l~~~~~~g~~v~e~~i~~~el~~ade~~~~ns~~gi~pV~~id--~ 233 (249)
T cd01559 156 IEGTASNLFFVKDGELVTPSLDRGGLAGITRQRVIELAAAKGYAVDERPLRLEDLLAADEAFLTNSLLGVAPVTAID--D 233 (249)
T ss_pred EEecceEEEEEECCEEECCCcccCccccHHHHHHHHHHHHcCceEEEEecCHHHHhhCCEEEEecCccceeEEEEEC--C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999996 4
Q ss_pred eEEeeCCCccHHHHHHHHHH
Q 023788 239 KRIEFKTGAQSVSRELYSTL 258 (277)
Q Consensus 239 ~~i~~~~~~g~~~~~l~~~~ 258 (277)
. .+.+||++++|+++|
T Consensus 234 ~----~~~~~~~~~~l~~~~ 249 (249)
T cd01559 234 H----DGPPGPLTRALRELL 249 (249)
T ss_pred c----ccCccHHHHHHHHhC
Confidence 2 235899999998875
No 18
>PRK12400 D-amino acid aminotransferase; Reviewed
Probab=100.00 E-value=1.4e-48 Score=346.33 Aligned_cols=240 Identities=20% Similarity=0.271 Sum_probs=194.1
Q ss_pred ceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCcccCC
Q 023788 2 KAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAP 80 (277)
Q Consensus 2 ~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~~~~ 80 (277)
.++|+.+|++ |+|++|++||.+||+.|+|+.| +.+++++.+.+++++++. ....+||+.+.++.+..++.+
T Consensus 38 Etir~~~G~~--~~l~~Hl~RL~~Sa~~L~i~~p~~~~~l~~~l~~~~~~~~~------~~~~~iri~v~rG~~~~~~~~ 109 (290)
T PRK12400 38 EVIRLYKGNF--HLLDPHITRLYRSMEEIELTLPFSKAELITLLYKLIENNNF------HEDGTIYLQVSRGVQARTHTF 109 (290)
T ss_pred EEEEEECCEe--cccHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCC------CCCEEEEEEEEeCCCCCCCCC
Confidence 4678899996 6779999999999999999977 788999999999998762 123456655543322345443
Q ss_pred C--CCcEEEEEEEecCcc---ccCCCcCeEEEeeecccccCCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCC
Q 023788 81 A--PEYTFLVFASPVGNY---FKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNK 155 (277)
Q Consensus 81 ~--~~~~~~i~~~p~~~~---~~~g~~~i~l~~~~~~~r~~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~ 155 (277)
+ ..|++++++.+.+.. ..+| +++...+ ..++.++++||+ ||+.+++++++|+++|+||+||+| +
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~----~~~~~~~~~Kt~-nyl~~vla~~ea~~~g~deaL~l~---~ 178 (290)
T PRK12400 110 SYDVPPTIYAYITKKERPALWIEYG---VRAISEP----DTRWLRCDIKSL-NLLPNILAATKAERKGCKEALFVR---N 178 (290)
T ss_pred CCCCCcEEEEEEecccCchhHHhcC---cEEEECC----CCCccCCCCccc-ccHHHHHHHHHHHHcCCCEEEEEc---C
Confidence 2 356666666543321 1223 3443221 123345789997 899999999999999999999996 5
Q ss_pred CeEEeeCceeEEEEECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEEEe
Q 023788 156 KNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSIT 235 (277)
Q Consensus 156 G~v~E~t~sNvf~v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~i~ 235 (277)
|+|+||+++|||+++||+|+|||+++|+|+||||+.||++|+++|++|+|+.++++||.+|||+|+|||+.||+||++|+
T Consensus 179 g~v~E~t~sNif~v~~~~l~TPpl~~g~L~GItR~~llela~~~gi~v~E~~i~~~eL~~Adevfltns~~gv~PV~~i~ 258 (290)
T PRK12400 179 GTVTEGSHSNFFLIKNGTLYTHPANHLILNGIIRQYVLSLAKTLRIPVQEELFSVRDVYQADECFFTGTTIEILPMTHLD 258 (290)
T ss_pred CEEEEcCceEEEEEECCEEEeCCCCCCcCcCHHHHHHHHHHHHcCCcEEEEeCCHHHHHhCCeeeEccCcceEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred eCCeEEeeCCCccHHHHHHHHHHHHhHh
Q 023788 236 YRGKRIEFKTGAQSVSRELYSTLVGIQT 263 (277)
Q Consensus 236 ~~~~~i~~~~~~g~~~~~l~~~~~~~~~ 263 (277)
++.++ .+.+||+++.|++.|.+.+.
T Consensus 259 --~~~~~-~~~~g~~t~~l~~~~~~~~~ 283 (290)
T PRK12400 259 --GTAIQ-DGQVGPITKMLQRSFSQSLL 283 (290)
T ss_pred --CEECC-CCCcCHHHHHHHHHHHHHHH
Confidence 67653 44689999999999988765
No 19
>PLN02845 Branched-chain-amino-acid aminotransferase-like protein
Probab=100.00 E-value=3.3e-48 Score=349.28 Aligned_cols=245 Identities=23% Similarity=0.271 Sum_probs=199.5
Q ss_pred ceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCcccCC
Q 023788 2 KAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAP 80 (277)
Q Consensus 2 ~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~~~~ 80 (277)
.++|+++|++ |+|++|++||.+||+.|+|+.| +.+++++.+.+++++++. ...+||++++.+.+.+++.+
T Consensus 72 ETirv~~G~~--~~le~Hl~RL~~Sa~~L~i~~p~~~~~l~~~i~~~i~~~~~-------~~~~irl~vtrG~g~~~~~~ 142 (336)
T PLN02845 72 DTATIRDGHL--YELDAHLDRFLRSAAKAKIPLPFDRATLRRILLQTVAASGC-------RNGSLRYWLSAGPGGFSLSP 142 (336)
T ss_pred EEEEEECCEE--cCHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCC-------CcEEEEEEEEeCCCCCCCCC
Confidence 4778999986 7889999999999999999877 889999999999998763 34567766553323445543
Q ss_pred --CCCcEEEEEEEecCccccCCCcCeEEEeeecccccCCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCCCeE
Q 023788 81 --APEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNL 158 (277)
Q Consensus 81 --~~~~~~~i~~~p~~~~~~~g~~~i~l~~~~~~~r~~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~G~v 158 (277)
...+++++...|.+.... ...++++.+++ +++. ++.++++||+ ||+.+++|+++|+++|+||+||+|+ +|+|
T Consensus 143 ~~~~~~~~~i~~~~~~~~~~-~~~gv~l~~~~-~~~~-~~~~~~~Kt~-nyl~~vla~~eA~~~G~deaLlln~--~G~V 216 (336)
T PLN02845 143 SGCSEPAFYAVVIEDTYAQD-RPEGVKVVTSS-VPIK-PPQFATVKSV-NYLPNALSQMEAEERGAFAGIWLDE--EGFV 216 (336)
T ss_pred CCCCCCEEEEEEcccccccc-ccCCeEEEEee-eeec-CCccccchhh-hhHHHHHHHHHHHHcCCCEEEEECC--CCcE
Confidence 245677777766542211 12345555543 3443 3446789997 9999999999999999999999998 7999
Q ss_pred EeeCceeEEEEE-CCEEEccCCCCCcccchHHHHHHHHHHhC---C--CcEEEEecChhhHhcccEEEEecCCCceEEEE
Q 023788 159 EEVSSCNIFILK-GNIISTPATSGTILAGITRKSIIEIASDC---G--FQVEERAIPVDELLEADEVFCTGTAVVVAPVG 232 (277)
Q Consensus 159 ~E~t~sNvf~v~-~g~l~TP~l~~~~L~GitR~~ll~~a~~~---g--~~v~e~~i~~~eL~~adevfltns~~gi~pV~ 232 (277)
+||++|||||++ +|+|+|||++ ++|+||||+.||++|+++ | ++|+|+.++++||.+|||+|+|||++||+||.
T Consensus 217 ~Egt~sNiF~v~~~~~l~TP~l~-~iL~GItR~~vlela~~~~~~G~~i~V~E~~i~~~eL~~AdEvFltnS~~gv~PV~ 295 (336)
T PLN02845 217 AEGPNMNVAFLTNDGELVLPPFD-KILSGCTARRVLELAPRLVSPGDLRGVKQRKISVEEAKAADEMMLIGSGVPVLPIV 295 (336)
T ss_pred EEcCcceEEEEEECCEEEeCCCC-CcCccHHHHHHHHHHHhhhccCCceEEEEEecCHHHHhcCCEEEEecCcccEEEEE
Confidence 999999999885 9999999987 599999999999999986 8 89999999999999999999999999999999
Q ss_pred EEeeCCeEEeeCCCccHHHHHHHHHHHHhHhcC
Q 023788 233 SITYRGKRIEFKTGAQSVSRELYSTLVGIQTGL 265 (277)
Q Consensus 233 ~i~~~~~~i~~~~~~g~~~~~l~~~~~~~~~~~ 265 (277)
+|+ ++.++ .+.+||+|++|++.|.+.+++.
T Consensus 296 ~id--~~~~~-~g~~gp~t~~L~~~~~~~~~~~ 325 (336)
T PLN02845 296 SWD--GQPIG-DGKVGPITLALHDLLLDDMRSG 325 (336)
T ss_pred EEC--CEECC-CCCCCHHHHHHHHHHHHHHhcC
Confidence 996 77753 4468999999999998877753
No 20
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=100.00 E-value=3.4e-48 Score=340.39 Aligned_cols=238 Identities=24% Similarity=0.293 Sum_probs=193.0
Q ss_pred ceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCcccCCC
Q 023788 2 KAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA 81 (277)
Q Consensus 2 ~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~~~~~ 81 (277)
.++|+.||++ ++|++|++||.+||+.|+|+.++.+.+.+.+.+++... ...++|+.+..+.+..++.+.
T Consensus 27 Etir~~~g~~--~~l~~Hl~RL~~Sa~~l~~~~~~~~~~~~~l~~~~~~~---------~~~~iri~v~~g~~~~~~~~~ 95 (268)
T PRK06092 27 TTARVRDGQV--SLLSRHLQRLQDACERLAIPLDDWAQLEQEMKQLAAEL---------ENGVLKVIISRGSGGRGYSPA 95 (268)
T ss_pred eEEEEECCee--ccHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhC---------CCeEEEEEEEccCCCCCCCCC
Confidence 4778999996 67899999999999999999876677877777776321 234556555433334555543
Q ss_pred --CCcEEEEEEEecCccccC-CCcCeEEEeeecccccCCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCCCeE
Q 023788 82 --PEYTFLVFASPVGNYFKE-GLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNL 158 (277)
Q Consensus 82 --~~~~~~i~~~p~~~~~~~-g~~~i~l~~~~~~~r~~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~G~v 158 (277)
..+.+++++.|++++... ..+++++.+++ +++..++.++++||+ ||+.+++++++|+++|+||+||+|+ +|+|
T Consensus 96 ~~~~~~~~i~~~~~~~~~~~~~~~gv~l~~~~-~~~~~~~~~~~~Kt~-ny~~~~~a~~~A~~~g~de~l~l~~--~g~v 171 (268)
T PRK06092 96 GCAAPTRILSVSPYPAHYSRWREQGITLALCP-TRLGRNPLLAGIKHL-NRLEQVLIRAELEQTEADEALVLDS--EGWV 171 (268)
T ss_pred CCCCCeEEEEeccCCccChhHhhCCEEEEEec-cccCCCCCccCcchh-hhHHHHHHHHHHHhcCCCEEEEECC--CCCE
Confidence 456788888887643221 11345666543 344444557889996 8999999999999999999999997 7999
Q ss_pred EeeCceeEEEEECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEEEeeCC
Q 023788 159 EEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRG 238 (277)
Q Consensus 159 ~E~t~sNvf~v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~i~~~~ 238 (277)
+|+++||||+++||+|+|||++.++|+||||+.++++|+++|++|+|+.++++||.+|||+|+|||++||+||.+|+ +
T Consensus 172 ~E~s~sNif~v~~~~~~TP~~~~~~L~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfltns~~gi~pV~~id--~ 249 (268)
T PRK06092 172 IECCAANLFWRKGGVVYTPDLDQCGVAGVMRQFILELLAQSGYPVVEVDASLEELLQADEVFICNSLMPVWPVRAIG--E 249 (268)
T ss_pred EEccceEEEEEECCEEECCCccccCcccHHHHHHHHHHHHcCCeEEEEECCHHHHhhCCEEEEeCCcceEEEEEEEC--C
Confidence 99999999999999999999988999999999999999999999999999999999999999999999999999996 6
Q ss_pred eEEeeCCCccHHHHHHHHHHHH
Q 023788 239 KRIEFKTGAQSVSRELYSTLVG 260 (277)
Q Consensus 239 ~~i~~~~~~g~~~~~l~~~~~~ 260 (277)
+.+ .+||++++|++.|..
T Consensus 250 ~~~----~~g~~~~~l~~~~~~ 267 (268)
T PRK06092 250 TSY----SSGTLTRYLQPLCER 267 (268)
T ss_pred EEc----cchHHHHHHHHHHhc
Confidence 664 368999999998864
No 21
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.
Probab=100.00 E-value=6.8e-48 Score=338.88 Aligned_cols=235 Identities=29% Similarity=0.422 Sum_probs=194.9
Q ss_pred ceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCcccCC
Q 023788 2 KAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAP 80 (277)
Q Consensus 2 ~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~~~~ 80 (277)
.++|+++|++ |+|++|++||.+||+.|+|+.+ +.+++++.+.+++++++. ..+.+|+++ ++|.+ ..++.+
T Consensus 29 Et~r~~~g~~--~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~i~~~~~~~~~-----~~~~~~~~~-t~g~~-~~~~~~ 99 (270)
T cd01558 29 EVIRVYNGKP--FALDEHLDRLYRSAKELRIDIPYTREELKELIRELVAKNEG-----GEGDVYIQV-TRGVG-PRGHDF 99 (270)
T ss_pred EEEEEECCEE--ecHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-----CCceEEEEE-EeCCC-ccCCCC
Confidence 3678999985 7889999999999999999876 788999999999998763 245677774 55654 345543
Q ss_pred C--CCcEEEEEEEecCcc----ccCCCcCeEEEeeecccccCCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCC
Q 023788 81 A--PEYTFLVFASPVGNY----FKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVN 154 (277)
Q Consensus 81 ~--~~~~~~i~~~p~~~~----~~~g~~~i~l~~~~~~~r~~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~ 154 (277)
. ..+.+++.+.|++.+ +.+ ++++.+++ +++. ..+++||+ ||+.+++|+++|+++|+||+||+|+
T Consensus 100 ~~~~~~~~~i~~~~~~~~~~~~~~~---gv~~~~~~-~~~~---~~~~~K~~-ny~~~~~a~~~a~~~g~de~l~ld~-- 169 (270)
T cd01558 100 PKCVKPTVVIITQPLPLPPAELLEK---GVRVITVP-DIRW---LRCDIKSL-NLLNNVLAKQEAKEAGADEAILLDA-- 169 (270)
T ss_pred CCCCCCEEEEEEEecCCCChhhhhc---CeEEEEec-cccc---CCCCchhh-ccHHHHHHHHHHHHcCCCEEEEEcC--
Confidence 2 356777777776532 223 34554442 3332 34689997 8999999999999999999999998
Q ss_pred CCeEEeeCceeEEEEECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEEE
Q 023788 155 KKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSI 234 (277)
Q Consensus 155 ~G~v~E~t~sNvf~v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~i 234 (277)
+|+|+|+++||||++++|+|+|||+++++|+||||+.++++|+++|++|+|+.++++||.+|||+|+|||++||+||++|
T Consensus 170 ~g~v~E~~~sNif~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~eL~~ade~fl~ns~~gv~PV~~i 249 (270)
T cd01558 170 DGLVTEGSSSNVFIVKNGVLVTPPLDNGILPGITRATVIELAKELGIPVEERPFSLEELYTADEVFLTSTTAEVMPVVEI 249 (270)
T ss_pred CCEEEEcCcEEEEEEECCEEECCCCcCCCCCChHHHHHHHHHHHcCCeEEEEeCCHHHHhhCCEEEEecCcccEEEEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCeEEeeCCCccHHHHHHHHHH
Q 023788 235 TYRGKRIEFKTGAQSVSRELYSTL 258 (277)
Q Consensus 235 ~~~~~~i~~~~~~g~~~~~l~~~~ 258 (277)
+ ++.++ .+.+||++++|++.|
T Consensus 250 ~--~~~~~-~~~~~~~~~~l~~~~ 270 (270)
T cd01558 250 D--GRPIG-DGKPGPVTKRLREAY 270 (270)
T ss_pred C--CeECC-CCCCCHHHHHHHHhC
Confidence 6 66652 345799999998764
No 22
>TIGR03461 pabC_Proteo aminodeoxychorismate lyase. Members of this protein family are aminodeoxychorismate lyase (ADC lyase), EC 4.1.3.38, the PabC protein of PABA biosynthesis. PABA (para-aminobenzoate) is a precursor of folate, needed for de novo purine biosynthesis. This enzyme is a pyridoxal-phosphate-binding protein in the class IV aminotransferase family (pfam01063).
Probab=100.00 E-value=7.6e-48 Score=336.96 Aligned_cols=233 Identities=25% Similarity=0.333 Sum_probs=191.0
Q ss_pred ceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCcccCC-
Q 023788 2 KAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAP- 80 (277)
Q Consensus 2 ~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~~~~- 80 (277)
.++|+++|++ |+|++|++||.+||+.|+|+.|+.+++++.+.++++.+. ..++|+.++.+.+..++.+
T Consensus 25 Et~r~~~G~~--~~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~~~~~~~~~~---------~~~ir~~v~~g~~~~~~~~~ 93 (261)
T TIGR03461 25 TTAKVRNGKI--ELLDLHLERLQDAAARLGIPLPDWDALREEMAQLAAGYS---------LGVLKVIISRGSGGRGYSPP 93 (261)
T ss_pred EEEEEECCEe--ccHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhCC---------CeEEEEEEecCCCCCCCCCC
Confidence 4678999996 778999999999999999998888999999999987653 3456655543322344443
Q ss_pred -CCCcEEEEEEEecCccccCC-CcCeEEEeeecccccCCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCCCeE
Q 023788 81 -APEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNL 158 (277)
Q Consensus 81 -~~~~~~~i~~~p~~~~~~~g-~~~i~l~~~~~~~r~~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~G~v 158 (277)
...+.+++.+.|++.+.... .+++++.+++ +++..++.++++||+ ||+.+++++++|+++|+||+||+|+ +|+|
T Consensus 94 ~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~Kt~-~y~~~~~a~~~A~~~g~de~llln~--~g~v 169 (261)
T TIGR03461 94 GCSDPTRIISVSPYPAHYSAWQQQGIRLGVSP-VRLGRNPLLAGIKHL-NRLEQVLIKAELENSEADEALVLDT--DGNV 169 (261)
T ss_pred CCCCCcEEEEeccCcccChhHhcCCEEEEEec-cccCCCCCCcCcccc-ccHHHHHHHHHhhhcCCCEEEEECC--CCCE
Confidence 24556778888776433211 1345565543 444444567899997 9999999999999999999999998 7999
Q ss_pred EeeCceeEEEEECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEEEeeCC
Q 023788 159 EEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRG 238 (277)
Q Consensus 159 ~E~t~sNvf~v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~i~~~~ 238 (277)
+|++++|||+++||+|+||+++.++|+||||+.++++|++.|++|+|+.++++||.+|||+|+|||++||+||++|+ +
T Consensus 170 ~E~s~sNif~~~~~~l~TP~~~~~~L~GItR~~il~~~~~~g~~v~E~~i~~~eL~~ade~f~~ns~~gi~pV~~id--~ 247 (261)
T TIGR03461 170 VECTAANIFWRKGNQVFTPDLSYCGVAGVMRQHVLALLPALGYEIEEVKAGLEELLSADEVFITNSLMGVVPVNAIG--E 247 (261)
T ss_pred EEeccEEEEEEECCEEECCCccccCcccHHHHHHHHHHHHcCCeEEEEecCHHHHhhCCEEEEeCCccceEEEEEEC--C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999996 6
Q ss_pred eEEeeCCCccHHHHHHH
Q 023788 239 KRIEFKTGAQSVSRELY 255 (277)
Q Consensus 239 ~~i~~~~~~g~~~~~l~ 255 (277)
+.+ .+||++++|+
T Consensus 248 ~~~----~~~~~~~~l~ 260 (261)
T TIGR03461 248 TSY----PSRTLTRLLQ 260 (261)
T ss_pred EEe----cchHHHHHhh
Confidence 664 2589998875
No 23
>PRK06680 D-amino acid aminotransferase; Reviewed
Probab=100.00 E-value=2.2e-47 Score=337.97 Aligned_cols=242 Identities=22% Similarity=0.320 Sum_probs=196.9
Q ss_pred ceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEE-EecCCCcccC
Q 023788 2 KAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLL-VGSGPILGLA 79 (277)
Q Consensus 2 ~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~-~g~~~~~~~~ 79 (277)
.++|+.+|++ |+|++|++||.+||+.|+|+.| +.+++++.+.+++++++. .++ ++|+.+ +|.+ ..++.
T Consensus 34 Et~r~~~g~~--~~l~~Hl~RL~~Sa~~L~i~~~~~~~~l~~~i~~~~~~~~~-----~~~--~lr~~vtrG~~-~~~~~ 103 (286)
T PRK06680 34 EVCAVRDGKL--VDLDRHLARLFRSLGEIRIAPPMTRAELVEVLRELIRRNRV-----REG--LVYLQVTRGVA-RRDHV 103 (286)
T ss_pred EEEEEECCEE--echHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC-----Cce--EEEEEEEeCCC-CCCCC
Confidence 3678889996 7789999999999999999976 789999999999998863 233 455444 4544 34443
Q ss_pred -C--CCCcEEEEEEEecCcc-ccC-CCcCeEEEeeecccccCCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCC
Q 023788 80 -P--APEYTFLVFASPVGNY-FKE-GLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVN 154 (277)
Q Consensus 80 -~--~~~~~~~i~~~p~~~~-~~~-g~~~i~l~~~~~~~r~~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~ 154 (277)
+ ...+++++++.|++.+ ... -.+++++...+. . ++.++++||+ ||+.+++++++|+++|+||+||+| +
T Consensus 104 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~gv~~~~~~~-~---~~~~~~~Ks~-nyl~~vla~~eA~~~g~dd~l~ld-~- 176 (286)
T PRK06680 104 FPAADVKPSVVVFAKSVDFARPAAAAETGIKVITVPD-N---RWKRCDIKSV-GLLPNVLAKQAAKEAGAQEAWMVD-D- 176 (286)
T ss_pred CCCCCCCcEEEEEEEeccccCChhHHhCCeEEEEecC-C---CCCCCCcchh-ccHHHHHHHHHHHHCCCCEEEEec-C-
Confidence 2 2467788888887641 110 012344444322 1 2345789997 899999999999999999999998 3
Q ss_pred CCeEEeeCceeEEEE-ECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEE
Q 023788 155 KKNLEEVSSCNIFIL-KGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGS 233 (277)
Q Consensus 155 ~G~v~E~t~sNvf~v-~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~ 233 (277)
|+|+|++++|||++ ++|+|+|||++.++|+||||+.++++|++.|++|+|+.++++||.+|||+|+|||++||+||.+
T Consensus 177 -g~v~E~~~sN~f~~~~~~~l~TP~~~~~iL~Gitr~~il~~a~~~g~~v~e~~i~~~el~~ade~f~~ns~~gi~pV~~ 255 (286)
T PRK06680 177 -GFVTEGASSNAWIVTKDGKLVTRPADNFILPGITRHTLIDLAKELGLEVEERPFTLQEAYAAREAFITAASSFVFPVVQ 255 (286)
T ss_pred -CEEEEcCcEEEEEEEECCEEEeCCCCCCCCcCHHHHHHHHHHHHcCCeEEEEcCCHHHHhcCcEEEEecCcccEEEEEE
Confidence 89999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCeEEeeCCCccHHHHHHHHHHHHhHhc
Q 023788 234 ITYRGKRIEFKTGAQSVSRELYSTLVGIQTG 264 (277)
Q Consensus 234 i~~~~~~i~~~~~~g~~~~~l~~~~~~~~~~ 264 (277)
|+ ++.++ .+.+||++++|+++|.+.+++
T Consensus 256 id--~~~~~-~~~~g~~~~~L~~~~~~~~~~ 283 (286)
T PRK06680 256 ID--GKQIG-NGKPGPIAKRLREAYEEFARL 283 (286)
T ss_pred EC--CEECC-CCCCCHHHHHHHHHHHHHHHh
Confidence 96 66653 345799999999999886654
No 24
>COG0115 IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.8e-47 Score=336.92 Aligned_cols=246 Identities=39% Similarity=0.584 Sum_probs=210.0
Q ss_pred eEecCCCcEeeeChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCcccCCC
Q 023788 3 AYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA 81 (277)
Q Consensus 3 ~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~~~~~ 81 (277)
+.|+++|+ +|+|++|++||++||+.|+|+.| +.+++......+.+.++. ...+|+|+++++.++..|+.+.
T Consensus 34 ~~r~~~g~--~~~l~~H~~RL~~Sa~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~y~r~~~~~~~~~~~~~~~ 105 (284)
T COG0115 34 TLRAYNGK--LFRLDEHLARLKRSAKRLGLPRPESEEEIELLIQLLLAKNNL------VPGLYIRPLVRGGGGGLGVRDA 105 (284)
T ss_pred EEEEeCCc--ccChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhCC------CCceEEEEEEEeecCCCCcCCC
Confidence 45777886 59999999999999999999987 778777778877777653 1238999999987777777765
Q ss_pred CCcEEEEEEEecCccccCCC--cCeEEEeeecccccCCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCCCeEE
Q 023788 82 PEYTFLVFASPVGNYFKEGL--APLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLE 159 (277)
Q Consensus 82 ~~~~~~i~~~p~~~~~~~g~--~~i~l~~~~~~~r~~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~G~v~ 159 (277)
.++.+.+++.|+++++..+. +++.+.+++.+++..+++...+|+. ||+.+++|+++|+++|+||+|++|. +|+|+
T Consensus 106 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~k~~-~y~~~~~a~~~A~~~G~~eal~~~~--~G~V~ 182 (284)
T COG0115 106 TEPTLIVAASPVGAYLKGGRLEKGVVLVISSPVRRAPPGPGAAKKTG-NYLSSVLAKREAKAAGADEALLLDE--DGYVT 182 (284)
T ss_pred CccEEEEEEEecccccCcccccCCeEEEEeehhhccCCCcchhhhhc-ccHHHHHHHHHHHHCCCCEEEEecC--CCeEE
Confidence 57788999999998766542 3444444445555544445678885 9999999999999999999999998 79999
Q ss_pred eeCceeEEEEE-CCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEEEeeCC
Q 023788 160 EVSSCNIFILK-GNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRG 238 (277)
Q Consensus 160 E~t~sNvf~v~-~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~i~~~~ 238 (277)
|++.+|+|+++ ||+|+||+++.++|+||||+.+|++|+++|++++|++++.+||.+|||+|+|||+.+|+||.+|+ +
T Consensus 183 Eg~~sNvf~v~~dg~~~TP~~~~~iL~GitR~~li~la~~~G~~v~E~~i~~~~l~~adevf~t~t~~~v~PV~~i~--~ 260 (284)
T COG0115 183 EGAGSNVFFVKGDGVLVTPPLSGGILPGITRDSLLELAKELGLTVEERPITLEDLKQADEVFLTNTAAGVTPVGLID--G 260 (284)
T ss_pred EcCcceEEEEEECCEEECCCCCCCccccHHHHHHHHHHHHcCceEEEeecCHHHHhhCCEEEEEccceEEEEEEEEC--C
Confidence 99999999999 88999999999999999999999999999999999999999999999999999999999999995 4
Q ss_pred eEEeeCCCccHHHHHHHHHHHHhHhcC
Q 023788 239 KRIEFKTGAQSVSRELYSTLVGIQTGL 265 (277)
Q Consensus 239 ~~i~~~~~~g~~~~~l~~~~~~~~~~~ 265 (277)
+ . +.+||+|++|+++|.+++.|.
T Consensus 261 ~-~---~~~gpit~~l~~~~~~~~~~~ 283 (284)
T COG0115 261 R-V---GQPGPVTKKLRELLTDIQYGE 283 (284)
T ss_pred c-c---CCCChHHHHHHHHHHHHhccC
Confidence 4 2 469999999999999998875
No 25
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional
Probab=100.00 E-value=4.2e-47 Score=336.77 Aligned_cols=239 Identities=21% Similarity=0.283 Sum_probs=194.6
Q ss_pred ceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCcccCCC
Q 023788 2 KAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA 81 (277)
Q Consensus 2 ~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~~~~~ 81 (277)
.++|+++|++ +.|++|++||.+||+.|+|+.|+.+++.+.+.++++++.. .....+||+++..+.+..
T Consensus 43 Et~rv~~g~i--~~l~~Hl~RL~~Sa~~l~i~~~~~~~l~~~i~~~v~~~~~-----~~~~~~iRl~v~~g~~~~----- 110 (292)
T PRK07849 43 ETLLVRDGRP--CNLEAHLERLARSAALLDLPEPDLDRWRRAVELAIEEWRA-----PEDEAALRLVYSRGRESG----- 110 (292)
T ss_pred EEEEEECCEE--CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcC-----CCCCeEEEEEEeCCCCCC-----
Confidence 4789999996 6789999999999999999988888999999999988631 023567776655332221
Q ss_pred CCcEEEEEEEecCccc-cCCCcCeEEEeeecc-----cccCCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCC
Q 023788 82 PEYTFLVFASPVGNYF-KEGLAPLNLYVEDEF-----HRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNK 155 (277)
Q Consensus 82 ~~~~~~i~~~p~~~~~-~~g~~~i~l~~~~~~-----~r~~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~ 155 (277)
..+++++.+.|++... ....+++++.+++.. .+..|..++++||+ ||+.+++++++|+++|+||+||+|+ +
T Consensus 111 ~~~~~~i~~~p~~~~~~~~~~~gv~l~~~~~~~~~~~~~~~p~~~~~~Kt~-ny~~~i~a~~~A~~~g~dd~L~ld~--~ 187 (292)
T PRK07849 111 GAPTAWVTVSPVPERVARARREGVSVITLDRGYPSDAAERAPWLLAGAKTL-SYAVNMAALRYAARRGADDVIFTST--D 187 (292)
T ss_pred CCCeEEEEEeecCccchhhccCCeEEEEEeccccCcccccCcccccccchh-hhHHHHHHHHHHHHcCCCEEEEEcC--C
Confidence 1456778888775321 111234555554211 11234457889996 9999999999999999999999998 7
Q ss_pred CeEEeeCceeEEEEECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEEEe
Q 023788 156 KNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSIT 235 (277)
Q Consensus 156 G~v~E~t~sNvf~v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~i~ 235 (277)
|+|+||+++||||++||+|+||++++|+|+||||+.++++|++.|++|+|+.++++||.+|||+|+|||++||+||.+|+
T Consensus 188 G~v~E~s~~Nif~~~~g~l~TP~~~~giL~GItR~~vie~~~~~g~~v~er~i~~~eL~~Adevfltns~~gi~pV~~id 267 (292)
T PRK07849 188 GYVLEGPTSTVVIATDDRLLTPPPWYGILPGTTQAALFEVAREKGWDCEYRALRPADLFAADGVWLVSSVRLAARVHTLD 267 (292)
T ss_pred CcEEECCceEEEEEECCEEECCCCcCCCCccHHHHHHHHHHHHcCCceEEEECCHHHHhhCCEEEEecCcceEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred eCCeEEeeCCCccHHHHHHHHHHHHh
Q 023788 236 YRGKRIEFKTGAQSVSRELYSTLVGI 261 (277)
Q Consensus 236 ~~~~~i~~~~~~g~~~~~l~~~~~~~ 261 (277)
++.+ ..||++++|++.|.+.
T Consensus 268 --~~~~----~~~~~~~~l~~~~~~~ 287 (292)
T PRK07849 268 --GRPL----PRDPLADELTELVDAA 287 (292)
T ss_pred --CEEC----CCChHHHHHHHHHHHH
Confidence 7664 3589999999999763
No 26
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached.
Probab=100.00 E-value=4.7e-47 Score=334.35 Aligned_cols=236 Identities=22% Similarity=0.313 Sum_probs=191.0
Q ss_pred ceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEE-EecCCCcccC
Q 023788 2 KAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLL-VGSGPILGLA 79 (277)
Q Consensus 2 ~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~-~g~~~~~~~~ 79 (277)
.++|+++|++ |+|++|++||.+||+.|+|+.+ +.+.+++.+.+++++++. ...+||+.+ +|.+ ..++.
T Consensus 31 Etir~~~g~~--~~l~~H~~RL~~Sa~~l~i~~~~~~~~l~~~i~~~~~~~~~-------~~~~irl~~~rg~~-~~~~~ 100 (276)
T TIGR01121 31 EVIRVYNGKL--FTVNEHIDRLYASAAKIRIDIPYTKEELHQLLHELVEKNNL-------NTGHVYFQVTRGVA-PRNHQ 100 (276)
T ss_pred EEEEEECCEE--eChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCC-------CceEEEEEEEcCCC-CcCCC
Confidence 3678889986 7889999999999999999976 789999999999998863 233455444 4443 23433
Q ss_pred -CC--CCcEEEEEEEecCcc---ccCCCcCeEEEeeecccccCCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEEccC
Q 023788 80 -PA--PEYTFLVFASPVGNY---FKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSV 153 (277)
Q Consensus 80 -~~--~~~~~~i~~~p~~~~---~~~g~~~i~l~~~~~~~r~~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~ 153 (277)
+. ..+.++++..|++.. +.+| +++..... .| +..+++|++ ||+.+++|+++|+++|+||+||++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~g---v~~~~~~~-~~---~~~~~~K~~-nyl~~vla~~eA~~~g~de~l~~~-- 170 (276)
T TIGR01121 101 FPAGTVKPVITAYTKEVPRPEENLEKG---VKAITVED-IR---WLRCDIKSL-NLLGNVLAKQEAHEKGAYEAILHR-- 170 (276)
T ss_pred CCCCCCCcEEEEEEecccCChhHHhcC---eEEEEecC-CC---ccCCCcchh-hhHHHHHHHHHHHHcCCCEEEEec--
Confidence 22 245666666665422 2333 44333222 12 235789996 999999999999999999999995
Q ss_pred CCCeEEeeCceeEEEEECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEE
Q 023788 154 NKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGS 233 (277)
Q Consensus 154 ~~G~v~E~t~sNvf~v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~ 233 (277)
+|+|+||+++|||++++|+|+|||+++|+|+||||+.++++|+++|++|+|++++++||.+|||+|+|||++||+||.+
T Consensus 171 -~g~v~E~~~sNif~v~~~~~~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fltns~~gi~PV~~ 249 (276)
T TIGR01121 171 -GGTVTEGSSSNVYGIKDGVLYTHPANNLILNGITRMVILACAEENGIPVKEEPFTKEELLNADEVFVSSTTAEITPVIE 249 (276)
T ss_pred -CCeEEecCceeEEEEECCEEEeCCCcCCCCcCHHHHHHHHHHHHCCCeEEEEeCCHHHHhcCCEEEEecCcccEEEEEE
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCeEEeeCCCccHHHHHHHHHHHHh
Q 023788 234 ITYRGKRIEFKTGAQSVSRELYSTLVGI 261 (277)
Q Consensus 234 i~~~~~~i~~~~~~g~~~~~l~~~~~~~ 261 (277)
|+ ++.++ .+.+||+++.|+++|.+.
T Consensus 250 id--~~~~~-~~~~g~~~~~L~~~~~~~ 274 (276)
T TIGR01121 250 ID--GQQIG-DGKPGPWTRQLQKAFEEK 274 (276)
T ss_pred EC--CEECC-CCCCCHHHHHHHHHHHHh
Confidence 96 66642 345799999999999764
No 27
>PRK09266 hypothetical protein; Provisional
Probab=100.00 E-value=1.5e-45 Score=323.29 Aligned_cols=231 Identities=17% Similarity=0.185 Sum_probs=188.4
Q ss_pred ceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCcccCCC
Q 023788 2 KAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA 81 (277)
Q Consensus 2 ~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~~~~~ 81 (277)
.++|+.||++ ++|++|++||.+||+.|++..++.+++++.+.++++. + ....+||++++++.+.+++.+.
T Consensus 29 ETir~~~g~~--~~l~~Hl~RL~~sa~~l~~~~~~~~~l~~~l~~~~~~-~-------~~~~~ir~~v~r~~g~~~~~~~ 98 (266)
T PRK09266 29 TSMQVRDGRV--RGLDLHLQRLRRASRELFGAALDDDRVRAQLRAALAA-G-------PADASVRVTVFAPDFDFRNPLA 98 (266)
T ss_pred EEEEEECCEE--cCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc-C-------CCcEEEEEEEEecCcccCCCCC
Confidence 4789999996 6789999999999999866434788999999998843 3 1357888876643334555332
Q ss_pred -CCcEEEEEEEecCccccCCCcCeEEEeeecccccCCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCCCeEEe
Q 023788 82 -PEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEE 160 (277)
Q Consensus 82 -~~~~~~i~~~p~~~~~~~g~~~i~l~~~~~~~r~~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~G~v~E 160 (277)
..+++++++.|.+.... +++++.+++ ++|. ++++||. ||+.+++++++|+++|+||+||+|+ +|+|+|
T Consensus 99 ~~~~~~~i~~~~~~~~~~---~~v~l~~~~-~~r~----~~~~K~~-~~l~~vla~~~a~~~g~de~l~ln~--~g~v~E 167 (266)
T PRK09266 99 DVAPDVLVATSPPADGPA---GPLRLQSVP-YERE----LPHIKHV-GTFGQLHLRRLAQRAGFDDALFVDP--DGRVSE 167 (266)
T ss_pred CCCceEEEEEecCCcCCC---CCeEEEEEE-eccc----CCCCCCC-CcHHHHHHHHHHHHcCCCeEEEEcC--CCcEEE
Confidence 35677777777654333 345555443 3442 4679997 7788899999999999999999998 799999
Q ss_pred eCceeEEEEECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEEEeeCCeE
Q 023788 161 VSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKR 240 (277)
Q Consensus 161 ~t~sNvf~v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~i~~~~~~ 240 (277)
|++||||++++|+|+||+. ++|+||||+.++++|+++|++|+|+.++++||.+|||+|+|||++||+||.+|+ ++.
T Consensus 168 ~~~sNlf~v~~~~l~TP~~--~~L~GItR~~ll~~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~--~~~ 243 (266)
T PRK09266 168 GATWNLGFWDGGAVVWPQA--PALPGVTMALLQRGLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAID--DVA 243 (266)
T ss_pred cCceEEEEEECCEEECCCC--CccchHHHHHHHHHHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEEC--CEE
Confidence 9999999999999999994 799999999999999999999999999999999999999999999999999995 666
Q ss_pred EeeCCCccHHHHHHHHHHHH
Q 023788 241 IEFKTGAQSVSRELYSTLVG 260 (277)
Q Consensus 241 i~~~~~~g~~~~~l~~~~~~ 260 (277)
+ +. .+|++++|++.|.+
T Consensus 244 ~--~~-~~~~~~~l~~~~~~ 260 (266)
T PRK09266 244 L--PD-SHALLELLRRAYEA 260 (266)
T ss_pred C--CC-CchHHHHHHHHHHh
Confidence 4 32 37999999999976
No 28
>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C terminus side of the pyridoxal-phosphate-lysine. The D-amino acid transferases (D-AAT), which are among the members of this entry, are required by bacteria to catalyse the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity [, ]. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1EKV_A 2HGX_A 1EKP_A 1KTA_B 1KT8_B 2A1H_B 2HDK_A 2HGW_B 1EKF_B 2HG8_A ....
Probab=100.00 E-value=1.4e-44 Score=310.64 Aligned_cols=228 Identities=29% Similarity=0.407 Sum_probs=169.3
Q ss_pred eChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCcccCCCCCcEEEEEEEe
Q 023788 14 FRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASP 92 (277)
Q Consensus 14 f~l~~Hl~RL~~sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~~~~~~~~~~~i~~~p 92 (277)
|+|++|++||.+||+.+ +..+ +.+++++.+.+++++++. .+..++|++++++++..+..+...+........
T Consensus 1 f~l~~Hl~Rl~~S~~~l-~~~~~~~~~l~~~i~~~~~~~~~------~~~~~ir~~v~~g~~~~~~~~~~~~~~~~~~~~ 73 (231)
T PF01063_consen 1 FFLDEHLERLRRSARAL-IGLPFSREELREIIQELLEANPD------QGEGYIRITVTRGGGPLGGSPPENSAPPPFSIA 73 (231)
T ss_dssp ETHHHHHHHHHHHHHHT-TTHSSHHHHHHHHHHHHHHHTTS------SSSEEEEEEEEETSSSSSSSECSEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHH-ccCCcCHHHHHHHHHHHHHHcCC------CCCcEEEEEEEcCCCCcCccCcccccccccccc
Confidence 57899999999999999 5443 789999999999998762 245589988876655554443322111111111
Q ss_pred cCccccCCC-cCeEEEeeecccccCCCCCCCCccccCcHHHHH-HHHHHHhcCCCeEEEEccCCCCeEEeeCceeEEEEE
Q 023788 93 VGNYFKEGL-APLNLYVEDEFHRATPGGAGGVKAISNYAPVLK-AISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILK 170 (277)
Q Consensus 93 ~~~~~~~g~-~~i~l~~~~~~~r~~~~~l~~~Kt~~~y~~~~~-a~~ea~~~g~de~llld~~~~G~v~E~t~sNvf~v~ 170 (277)
.+....... ....+..... ....+++++++||+ +|..+.+ +.++|+++|+||+|++|+ +|+|+|++++|||+++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Kt~-~~~~~~~~~~~~a~~~g~de~ll~d~--~G~v~E~~~sNif~~~ 149 (231)
T PF01063_consen 74 PPRRPPPPLVGSVGVRRASP-PLPRPNPLPRHKTT-NRLANVLAALRAAREKGADEALLLDE--DGNVTEGSTSNIFFVK 149 (231)
T ss_dssp TCHHHHEEEEEECSEECETT-TSE-TTTSTTS-BS-HHHHHHHHHHHHHHHTTSSEEEEEET--TSBEEEESSSEEEEEE
T ss_pred ccccCCcceeeeeeEEeccc-cccccCCCCCeeEC-CcchhhHHHHHHHHhcCcchhheecC--CCCcCCCCCccccccc
Confidence 111100000 0001111111 11112248999997 6666666 666777899999999998 7999999999999999
Q ss_pred CCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEEEeeCCeEEeeCCCccHH
Q 023788 171 GNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSV 250 (277)
Q Consensus 171 ~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~i~~~~~~i~~~~~~g~~ 250 (277)
||+|+|||++.|+|+||||+.++++++++|++|+|+.++++||.+|||+|+|||++||+||.+|+ ++.+ + +||+
T Consensus 150 ~~~~~TP~~~~giL~Gitr~~ll~~~~~~g~~v~e~~i~~~~L~~ade~fl~ns~~gi~pV~~i~--~~~~--~--~~p~ 223 (231)
T PF01063_consen 150 DGTLYTPPLDSGILPGITRQLLLELAKELGIPVEERPITLDDLQQADEVFLTNSLRGIRPVKSID--GRSF--G--PGPI 223 (231)
T ss_dssp TTEEEEESGSSSSB--HHHHHHHHHHHHTTSEEEEE-BBHHHHHTHSEEEEEETTTEEEEEEEET--TEES--T--THHH
T ss_pred CCEEEcCChhhhhccHHHHHHHHHHHHhCCCCcEEEEeCHHHhhhhhheEEecchhhEEEEEEEC--CEEC--C--CCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999995 7763 3 8999
Q ss_pred HHHHHHHH
Q 023788 251 SRELYSTL 258 (277)
Q Consensus 251 ~~~l~~~~ 258 (277)
|++|+++|
T Consensus 224 ~~~L~~~~ 231 (231)
T PF01063_consen 224 TRRLQEAY 231 (231)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99999987
No 29
>PRK07546 hypothetical protein; Provisional
Probab=100.00 E-value=3.3e-42 Score=291.68 Aligned_cols=200 Identities=18% Similarity=0.231 Sum_probs=164.7
Q ss_pred ceEecC-CCcEeeeChhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCcccCC
Q 023788 2 KAYRKE-DGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAP 80 (277)
Q Consensus 2 ~~~rv~-~G~~~~f~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~~~~ 80 (277)
.|+|+. +|++ ++|++|++||.+||+.|+++.+ .+.+++.+.++++++. +.+++|+++..++
T Consensus 8 ETi~~~~~G~~--~~l~~Hl~RL~~sa~~l~~~~~-~~~l~~~l~~~~~~~~--------~~~~vrl~~~~~g------- 69 (209)
T PRK07546 8 ETLRWEPGAGF--PRLDRHLARLERSARALGFPCD-PAAVRAKLAEAVAGAQ--------GPLRLRLTLARDG------- 69 (209)
T ss_pred EEEEEeCCCCc--ccHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhhccC--------CCeEEEEEEcCCC-------
Confidence 478999 9996 6789999999999999999975 6788888888887532 4567886654322
Q ss_pred CCCcEEEEEEEecCccccCCCcCeEEEeeecccccCCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCCCeEEe
Q 023788 81 APEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEE 160 (277)
Q Consensus 81 ~~~~~~~i~~~p~~~~~~~g~~~i~l~~~~~~~r~~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~G~v~E 160 (277)
.+++...|+++.... .++++.++ ..++..++++.++||+ ||+.+++++++|+++|+||+||+|+ +|+|+|
T Consensus 70 ----~~~i~~~p~~~~~~~--~~~~l~~~-~~~~~~~~~~~~~Kt~-nr~~~v~a~~~a~~~g~de~l~l~~--~G~v~E 139 (209)
T PRK07546 70 ----RLTVETAPLPPLPPD--TVWRVAIA-RTRLDSADPLLRYKTT-RRAAYDAARAELPPAEADEVILLNE--RGEVCE 139 (209)
T ss_pred ----CEEEEEecCCCCCCC--CcEEEEEc-CcccCCCCcchhcccC-ChHHHHHHHHHHhhCCCCEEEEECC--CCcEEE
Confidence 255667776542211 22344443 2344555668899996 8899999999999999999999997 799999
Q ss_pred eCceeEEEEECCEEE-ccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEEE
Q 023788 161 VSSCNIFILKGNIIS-TPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSI 234 (277)
Q Consensus 161 ~t~sNvf~v~~g~l~-TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~i 234 (277)
|+++||||+++|+|+ |||++.|+|+||||+.+++. .+++|+.++++||.+|||+|+|||++||+||..|
T Consensus 140 ~s~~Ni~~~~~~~~~~TP~~~~g~L~Gi~R~~ll~~-----~~v~e~~i~~~~L~~adevfl~NSl~gv~pV~~~ 209 (209)
T PRK07546 140 GTITNVFLDRGGGMLTTPPLSCGLLPGVLRAELLDA-----GRAREAVLTVDDLKSARAIWVGNSLRGLIRAELI 209 (209)
T ss_pred cCceeEEEEECCEEEECCCCcCCCCccHHHHHHHhh-----CCeEEEEcCHHHHhhCCEEEEEccceeEEEEEEC
Confidence 999999999999999 99999999999999999985 6899999999999999999999999999999864
No 30
>PRK07101 hypothetical protein; Provisional
Probab=100.00 E-value=3.9e-33 Score=231.67 Aligned_cols=180 Identities=16% Similarity=0.196 Sum_probs=134.1
Q ss_pred CceEecCCCcEeeeChhhHHHHHHHHHhhCCCCC-C-CHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCccc
Q 023788 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPS-P-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGL 78 (277)
Q Consensus 1 ~~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~-~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~~ 78 (277)
+.|+|++||++ ++|++|++||.+||+.+++.. | +.+++.+.+.++ . .+.+|+|++. +.| .
T Consensus 6 ~ETir~~~g~~--~~l~~Hl~RL~~Sa~~l~~~~~~~~~~~~~~~~~~~----~-------~~~~r~rl~~-~~g-~--- 67 (187)
T PRK07101 6 FETIAIEDGEI--QNLSYHQQRYERTLAEFYGKEAPFDLAEIIQPPTEL----Q-------EGLVRCRIDY-NAE-I--- 67 (187)
T ss_pred eEEEeeeCCee--ccHHHHHHHHHHHHHHHcccCCcccHHHHhhchhhh----c-------CCCEEEEEEe-cCC-c---
Confidence 35789999985 778999999999999999854 4 677776666443 1 2467888644 443 1
Q ss_pred CCCCCcEEEEEEEecCccccCCCcCeEEEeeecccccCCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCCCeE
Q 023788 79 APAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNL 158 (277)
Q Consensus 79 ~~~~~~~~~i~~~p~~~~~~~g~~~i~l~~~~~~~r~~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~G~v 158 (277)
+-+...|+++... .++++..+ ++...++||++ +. .+....|++.|+||+||+| +|+|
T Consensus 68 -------~~~~~~~~~~~~~---~~~~~~~~-------~~~~~~~Kt~~-r~--~~~~~~a~~~g~de~l~~~---~G~v 124 (187)
T PRK07101 68 -------YQVQYFPYQRRPI---RSFQPVYC-------DDIDYSLKYTD-RS--ALNELFAQKGECDEIIIIK---NGLV 124 (187)
T ss_pred -------EEEEEEcCCCCCc---CceEEEec-------CCcccccccCC-HH--HHHHHHHHhCCCCEEEEEc---CCEE
Confidence 2233344433211 23444321 22345899974 32 1233345668999999997 5999
Q ss_pred EeeCceeEEEEECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCce
Q 023788 159 EEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVV 228 (277)
Q Consensus 159 ~E~t~sNvf~v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi 228 (277)
+||+++|||++++|+|+||| .++|+||||+.+++. | +|+|+.++++||.+|||+|+|||++|+
T Consensus 125 ~E~~~sNi~~~~~~~~~TP~--~~~L~Gi~R~~ll~~----~-~v~e~~i~~~~L~~ad~~~~~nsl~G~ 187 (187)
T PRK07101 125 TDTSIGNLAFFDGKQWFTPK--KPLLKGTQRARLLDE----G-KIKEKDITVEDLLQYEEIRLINAMNGF 187 (187)
T ss_pred EEccceEEEEEECCEEEcCC--CCCccHHHHHHHHcc----C-CEEEEecCHHHHhcCCEEEEEecccCC
Confidence 99999999999999999999 489999999999983 5 899999999999999999999999985
No 31
>PF15507 DUF4649: Domain of unknown function (DUF4649)
Probab=62.88 E-value=11 Score=26.09 Aligned_cols=52 Identities=21% Similarity=0.194 Sum_probs=35.0
Q ss_pred EEecChhhHhcccEE-EEe-cCCCceEEEEEEeeCCeEEeeCCCccHHHHHHHH
Q 023788 205 ERAIPVDELLEADEV-FCT-GTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYS 256 (277)
Q Consensus 205 e~~i~~~eL~~adev-flt-ns~~gi~pV~~i~~~~~~i~~~~~~g~~~~~l~~ 256 (277)
||.++.++..+..-+ .-| .++..-.||.++.++|+.+.|.|..|.+...|.+
T Consensus 12 Er~~~fe~~~ef~~s~~~C~vtipD~~~V~svt~~G~~ldy~G~~GdLY~~L~k 65 (72)
T PF15507_consen 12 ERTQTFEDYNEFMRSQSGCIVTIPDYYPVTSVTYNGQDLDYQGTYGDLYFFLMK 65 (72)
T ss_pred EEEEEeCCHHHHHHHhccCcccCCCceEEEEEEECCEEeccccchhHHHHHHHH
Confidence 555555444332211 223 5667789999999999999887778888777664
No 32
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=52.58 E-value=33 Score=24.88 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=33.6
Q ss_pred CCcccchHHHHHH-HHHHhCCCcEE---------EEecChhhHhcccEEEEecCCC
Q 023788 181 GTILAGITRKSII-EIASDCGFQVE---------ERAIPVDELLEADEVFCTGTAV 226 (277)
Q Consensus 181 ~~~L~GitR~~ll-~~a~~~g~~v~---------e~~i~~~eL~~adevfltns~~ 226 (277)
.|+-.+++-...| +.|+++|+++. +..++.+++..||-+++++...
T Consensus 9 ~G~a~s~laa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~~Ad~vi~~~~~~ 64 (96)
T cd05569 9 TGIAHTYMAAEALEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILAADVP 64 (96)
T ss_pred CchhHHHHHHHHHHHHHHHCCCeEEEEEecCcCccCcCCHHHHhhCCEEEEecCCC
Confidence 4555555554445 56788999877 5567779999999999988764
No 33
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=52.00 E-value=29 Score=24.72 Aligned_cols=45 Identities=20% Similarity=0.331 Sum_probs=32.7
Q ss_pred CCcccchHHHHHHH-HHHhCCCcEE---------EEecChhhHhcccEEEEecCC
Q 023788 181 GTILAGITRKSIIE-IASDCGFQVE---------ERAIPVDELLEADEVFCTGTA 225 (277)
Q Consensus 181 ~~~L~GitR~~ll~-~a~~~g~~v~---------e~~i~~~eL~~adevfltns~ 225 (277)
.|+-...|-...|+ .|+++|+.+. +..++.+++..||-+++.+..
T Consensus 8 ~G~Aht~lAae~L~~aA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~viia~d~ 62 (85)
T TIGR00829 8 TGIAHTFMAAEALEKAAKKRGWEVKVETQGSVGAQNALTAEDIAAADGVILAADR 62 (85)
T ss_pred CcHHHHHHHHHHHHHHHHHCCCeEEEEecCCcCccCCCCHHHHHhCCEEEEeccC
Confidence 34445555555554 4667898877 556888999999999998875
No 34
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=49.25 E-value=32 Score=24.61 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=27.6
Q ss_pred HHHHHHHhCCCcEE---------EEecChhhHhcccEEEEecCC
Q 023788 191 SIIEIASDCGFQVE---------ERAIPVDELLEADEVFCTGTA 225 (277)
Q Consensus 191 ~ll~~a~~~g~~v~---------e~~i~~~eL~~adevfltns~ 225 (277)
.+-+.|+++|+.+. +..++.+++..||-+++.+..
T Consensus 5 aL~~aA~~~G~~i~VEtqg~~g~~~~lt~~~i~~Ad~VIia~d~ 48 (88)
T PRK10474 5 ALESAAKAKGWEVKVETQGSIGLENELTAEDVASADMVILTKDI 48 (88)
T ss_pred HHHHHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEecC
Confidence 34456778898776 446888999999999998875
No 35
>PF13051 DUF3912: Protein of unknown function (DUF3912)
Probab=43.30 E-value=24 Score=23.03 Aligned_cols=38 Identities=16% Similarity=0.207 Sum_probs=27.0
Q ss_pred ceeEEEEECCEEEccCCCCCcccchHHHHHHHHHHhCC
Q 023788 163 SCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCG 200 (277)
Q Consensus 163 ~sNvf~v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g 200 (277)
-++++++.+++.+--.+..-+|-|+--...-++|++.|
T Consensus 31 ~~~f~ivi~~q~i~velkdivlvgvdvgqfh~wceqng 68 (68)
T PF13051_consen 31 ESHFAIVIGEQSIDVELKDIVLVGVDVGQFHEWCEQNG 68 (68)
T ss_pred CCcEEEEECCeEEEEEeeeEEEEEecHHHHHHHHhhCC
Confidence 35666666766666666777788888888788877654
No 36
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=39.66 E-value=22 Score=25.67 Aligned_cols=32 Identities=31% Similarity=0.456 Sum_probs=27.0
Q ss_pred cchHHHHHHHHHHhCCCcEEEEecChhhHhcc
Q 023788 185 AGITRKSIIEIASDCGFQVEERAIPVDELLEA 216 (277)
Q Consensus 185 ~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~a 216 (277)
.|=.-+.|++.|++.|++++|.+.-.+.|..-
T Consensus 30 ~G~iAe~II~~Ake~~Vpi~edp~Lv~~L~~l 61 (92)
T COG2257 30 KGEIAEKIIEKAKEHGVPIQEDPLLVELLLKL 61 (92)
T ss_pred chHHHHHHHHHHHHcCCCcccCHHHHHHHHhc
Confidence 56678999999999999999998877777653
No 37
>COG1935 Uncharacterized conserved protein [Function unknown]
Probab=37.80 E-value=39 Score=25.57 Aligned_cols=44 Identities=34% Similarity=0.492 Sum_probs=29.1
Q ss_pred CcccchHHHHHHHHHHhCCCc-EEEEe----cChhhHhcccEEEEecCCC
Q 023788 182 TILAGITRKSIIEIASDCGFQ-VEERA----IPVDELLEADEVFCTGTAV 226 (277)
Q Consensus 182 ~~L~GitR~~ll~~a~~~g~~-v~e~~----i~~~eL~~adevfltns~~ 226 (277)
-.|-||+|+.+-++.+. ++. ++-+. .+..-|...|-+|+|++..
T Consensus 4 ~~LtGIs~~vie~l~~~-~~rTieiRsa~N~~tv~rl~~GDlVFlT~~~~ 52 (122)
T COG1935 4 LALTGISRRVIESLLRN-PIRTIEIRSARNLLTVLRLHEGDLVFLTSTSL 52 (122)
T ss_pred eEEechhHHHHHHHHhC-CceEEEEEcccchHHhhcCCCCCEEEEehhHh
Confidence 35889999988777654 443 22222 3445566779999998754
No 38
>PF04322 DUF473: Protein of unknown function (DUF473); InterPro: IPR007417 This is a family of uncharacterised archaeal proteins.
Probab=36.17 E-value=38 Score=25.87 Aligned_cols=46 Identities=30% Similarity=0.425 Sum_probs=31.3
Q ss_pred CcccchHHHHHHHHHHhCCCcEEEEe----cChhhHhcccEEEEecCCCc
Q 023788 182 TILAGITRKSIIEIASDCGFQVEERA----IPVDELLEADEVFCTGTAVV 227 (277)
Q Consensus 182 ~~L~GitR~~ll~~a~~~g~~v~e~~----i~~~eL~~adevfltns~~g 227 (277)
-.|-||.|+.|=++.+..=-.++-+. +.+..+...|-+|+|++...
T Consensus 4 ~aLTGIs~~vi~eL~~~~~RTiEirSa~N~~~~~~~~~Gd~VFlT~~~~~ 53 (119)
T PF04322_consen 4 VALTGISRRVIDELKKNHIRTIEIRSAHNVIALESLDPGDRVFLTSVSLE 53 (119)
T ss_pred EEEeccCHHHHHHHHhCCceEEEEEcchheeeeecCCCCCEEEEecCCHH
Confidence 36889999998887664322333332 45667777899999987543
No 39
>PF14894 Lsm_C: Lsm C-terminal; PDB: 1M5Q_1.
Probab=35.61 E-value=38 Score=22.79 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=15.3
Q ss_pred CccHHHHHHHHHHHHhHhcC
Q 023788 246 GAQSVSRELYSTLVGIQTGL 265 (277)
Q Consensus 246 ~~g~~~~~l~~~~~~~~~~~ 265 (277)
+.||+++++.+.|.++++.+
T Consensus 43 GsGPlAerv~~ly~eyi~~k 62 (64)
T PF14894_consen 43 GSGPLAERVYDLYNEYIEKK 62 (64)
T ss_dssp --SHHHHHHHHHHHHHHH--
T ss_pred cCChHHHHHHHHHHHHHHhc
Confidence 48999999999999998753
No 40
>PF14475 Mso1_Sec1_bdg: Sec1-binding region of Mso1
Probab=34.80 E-value=54 Score=20.01 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=16.4
Q ss_pred cHHHHHHHHHHHHhHhcCCCCCCCCc
Q 023788 248 QSVSRELYSTLVGIQTGLIKDNKGWT 273 (277)
Q Consensus 248 g~~~~~l~~~~~~~~~~~~~~~~~~~ 273 (277)
.-|.+.|++.|.+ +...+.+||
T Consensus 20 T~v~r~l~~yY~~----k~~~~P~WL 41 (41)
T PF14475_consen 20 THVHRVLRKYYTE----KGRPFPGWL 41 (41)
T ss_pred hHHHHHHHHHHHH----cCCCCCCcC
Confidence 4567777777777 567788997
No 41
>PRK03972 ribosomal biogenesis protein; Validated
Probab=34.47 E-value=2.8e+02 Score=23.38 Aligned_cols=91 Identities=15% Similarity=0.104 Sum_probs=53.6
Q ss_pred HHHHhcCCCeEEEEccCCCCeEEeeCce----------------eEEEEECC-------------EEEccCCCCCcccch
Q 023788 137 SRAKNRGFSDVLYLDSVNKKNLEEVSSC----------------NIFILKGN-------------IISTPATSGTILAGI 187 (277)
Q Consensus 137 ~ea~~~g~de~llld~~~~G~v~E~t~s----------------Nvf~v~~g-------------~l~TP~l~~~~L~Gi 187 (277)
..|.+.|+.+.|++++. +|+...-..+ ||...++= .++|-..... +|
T Consensus 43 ~~A~~~g~TdLIVV~E~-rg~P~~L~i~hLP~gP~GPTa~FkLsnV~l~~ei~~~~~~~~s~~~p~iItts~kt~--~g- 118 (208)
T PRK03972 43 MEAYDRGYERLLIINVW-KGNPLKMTFIKVGPEDWGYLGYLYLHGIKLQREMGFRNLRPIREDMPLVITTAKRVG--LD- 118 (208)
T ss_pred HHHHHCCCCeEEEEecC-CCcCCeEEEEcCCCCCCCceEEEEEccEEEHHHcccCCCCCccccccEEEEcCCCCC--HH-
Confidence 46888999999999995 5654433333 33332221 1232221111 22
Q ss_pred HHHHHHHHHHhCCCcEEEE-ecChhhH-h--cccEEE-EecCCCceEEEE
Q 023788 188 TRKSIIEIASDCGFQVEER-AIPVDEL-L--EADEVF-CTGTAVVVAPVG 232 (277)
Q Consensus 188 tR~~ll~~a~~~g~~v~e~-~i~~~eL-~--~adevf-ltns~~gi~pV~ 232 (277)
.++..-++|+++|++..+| ..++++| . .+|.++ +..--+|+ .|.
T Consensus 119 ~~~~Ak~lA~eLgi~yV~R~k~Sl~~L~~~~~~d~vLVV~~~~~~~-~~~ 167 (208)
T PRK03972 119 HMAFAQVFAELTGGKFVPRGGKSLQDIADKYNTDVLGVIERHPRGM-AVN 167 (208)
T ss_pred HHHHHHHHHHHhCCceeCcCCcCHHHHHhhhcCceEEEEecCCCce-EEE
Confidence 3556667888899988775 4788999 2 346666 55566666 444
No 42
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=32.53 E-value=84 Score=23.72 Aligned_cols=45 Identities=13% Similarity=0.151 Sum_probs=32.2
Q ss_pred CCcccchHHHHHHH-HHHhCCCcEE---------EEecChhhHhcccEEEEecCC
Q 023788 181 GTILAGITRKSIIE-IASDCGFQVE---------ERAIPVDELLEADEVFCTGTA 225 (277)
Q Consensus 181 ~~~L~GitR~~ll~-~a~~~g~~v~---------e~~i~~~eL~~adevfltns~ 225 (277)
.|+=...+-...|+ .|++.|+.+. +..++.+++..||-+++.+..
T Consensus 13 ~GiAht~lAAeaL~kAA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~VIia~d~ 67 (114)
T PRK10427 13 SGVAHTYMAAERLEKLCQLEKWGVKIETQGALGTENRLTDEDIRRADVVLLITDI 67 (114)
T ss_pred CcHHHHHHHHHHHHHHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEecC
Confidence 45555555555554 5667898876 446788999999999998875
No 43
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=32.36 E-value=1.3e+02 Score=20.67 Aligned_cols=58 Identities=14% Similarity=0.192 Sum_probs=31.4
Q ss_pred EEEccCCCCCcc-cchHHH-HHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEEEeeCCeEE
Q 023788 173 IISTPATSGTIL-AGITRK-SIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRI 241 (277)
Q Consensus 173 ~l~TP~l~~~~L-~GitR~-~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~i~~~~~~i 241 (277)
.+|+|+.++-+| ++-.+. .+.-+++.+|++.+-..+.. .+ + .+-.|-+|+-.+ ||..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~kv~~~L~elglpye~~~~~~-----~~--~--~~P~GkVP~L~~--dg~vI 61 (74)
T cd03079 2 ALYQPYEEEQILLPDNASCLAVQTFLKMCNLPFNVRCRAN-----AE--F--MSPSGKVPFIRV--GNQIV 61 (74)
T ss_pred ccccCCccCeeecCCCCCHHHHHHHHHHcCCCcEEEecCC-----cc--c--cCCCCcccEEEE--CCEEE
Confidence 367777553333 244443 33345677899886553321 11 1 112389999654 57765
No 44
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=30.99 E-value=1.2e+02 Score=23.29 Aligned_cols=37 Identities=16% Similarity=0.341 Sum_probs=27.4
Q ss_pred HHHHHH-HHHHhCCCcEE---------EEecChhhHhcccEEEEecC
Q 023788 188 TRKSII-EIASDCGFQVE---------ERAIPVDELLEADEVFCTGT 224 (277)
Q Consensus 188 tR~~ll-~~a~~~g~~v~---------e~~i~~~eL~~adevfltns 224 (277)
|-..-| ..|+++|+.|+ |-.++.+|+..||-|++..-
T Consensus 19 MAAeaLe~~A~~~g~~IKVETqGs~G~eN~LT~edI~~Ad~VI~AaD 65 (122)
T COG1445 19 MAAEALEKAAKKLGVEIKVETQGAVGIENRLTAEDIAAADVVILAAD 65 (122)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCcccccCcCCHHHHHhCCEEEEEec
Confidence 444444 46778888765 34699999999999998764
No 45
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=29.71 E-value=30 Score=29.75 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=26.8
Q ss_pred CEEEccCCCCCcccchH----HHHHHHHHHhCCCcEEEEecChhhH
Q 023788 172 NIISTPATSGTILAGIT----RKSIIEIASDCGFQVEERAIPVDEL 213 (277)
Q Consensus 172 g~l~TP~l~~~~L~Git----R~~ll~~a~~~g~~v~e~~i~~~eL 213 (277)
.+.+||| ..|.||+=| |.++|.+.++ ..+|..++.+|+
T Consensus 30 ~TYitPP-G~GFlP~~TA~HHr~~il~Lv~~---al~ea~v~~~di 71 (336)
T KOG2708|consen 30 HTYITPP-GEGFLPRDTARHHRAWILGLVKQ---ALEEAGVTSDDI 71 (336)
T ss_pred ccccCCC-CCCCCcchhHHHHHHHHHHHHHH---HHHHcCCChhhC
Confidence 4678999 789999988 6778877554 234555665555
No 46
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.38 E-value=1.2e+02 Score=23.24 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=31.0
Q ss_pred HHHHHhhCCCCCC-CHHHHHHHHHHHHHHcCCCCCCCCCccEEEE
Q 023788 23 LQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIR 66 (277)
Q Consensus 23 L~~sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir 66 (277)
|..++..|++..+ +++++.+.-..+.+-|... ..|..||.
T Consensus 58 lqEa~qILnV~~~ln~eei~k~yehLFevNdks----kGGSFYLQ 98 (132)
T KOG3442|consen 58 LQEAQQILNVKEPLNREEIEKRYEHLFEVNDKS----KGGSFYLQ 98 (132)
T ss_pred HHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcc----cCcceeeh
Confidence 6788999999877 8999999999998877642 13466664
No 47
>PRK06683 hypothetical protein; Provisional
Probab=29.24 E-value=84 Score=22.17 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhCCCcEEEEecChhhHhccc
Q 023788 188 TRKSIIEIASDCGFQVEERAIPVDELLEAD 217 (277)
Q Consensus 188 tR~~ll~~a~~~g~~v~e~~i~~~eL~~ad 217 (277)
+++.+.++|+..++|+..-. +.+||..|-
T Consensus 41 ~~~~i~~~~~~~~Vpv~~~~-t~~eLG~A~ 69 (82)
T PRK06683 41 LTHVIIRTALQHNIPITKVE-SVRKLGKVA 69 (82)
T ss_pred HHHHHHHHHHhcCCCEEEEC-CHHHHHHHh
Confidence 89999999999999998877 999998874
No 48
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=27.65 E-value=71 Score=27.03 Aligned_cols=26 Identities=27% Similarity=0.632 Sum_probs=22.0
Q ss_pred HHHHHHHHhCCCcEEEEecChhhHhc
Q 023788 190 KSIIEIASDCGFQVEERAIPVDELLE 215 (277)
Q Consensus 190 ~~ll~~a~~~g~~v~e~~i~~~eL~~ 215 (277)
..+++.|++.|+.|+++.++.+||.+
T Consensus 93 ~~lF~~A~~~gi~V~~rsvs~~ei~~ 118 (212)
T PF09778_consen 93 NRLFQKAKAAGINVEKRSVSIQEIIE 118 (212)
T ss_pred HHHHHHHHHcCCceEEeeccHHHHHH
Confidence 45677788899999999999999975
No 49
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=25.94 E-value=1e+02 Score=21.67 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHhCCCcEEEEecChhhHhcc
Q 023788 187 ITRKSIIEIASDCGFQVEERAIPVDELLEA 216 (277)
Q Consensus 187 itR~~ll~~a~~~g~~v~e~~i~~~eL~~a 216 (277)
-+++.+..+|++.++|+.+-. +.+||..|
T Consensus 40 ~~~~~i~~~c~~~~Vp~~~~~-s~~eLG~a 68 (82)
T PRK13602 40 RLTEKVEALANEKGVPVSKVD-SMKKLGKA 68 (82)
T ss_pred HHHHHHHHHHHHcCCCEEEEC-CHHHHHHH
Confidence 489999999999999998877 88999876
No 50
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=25.75 E-value=1.2e+02 Score=20.47 Aligned_cols=61 Identities=16% Similarity=0.229 Sum_probs=34.2
Q ss_pred HHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEEEeeCCeEEeeCCCccHHHHHHHH
Q 023788 191 SIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYS 256 (277)
Q Consensus 191 ~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~i~~~~~~i~~~~~~g~~~~~l~~ 256 (277)
.+...+.+.|++.++..+...+-. .++..-.| -.|-+|+-..+.+|..+ + ..+.+.+.|.+
T Consensus 15 kv~~~L~~~gi~y~~~~v~~~~~~-~~~~~~~~-p~~~vP~l~~~~~~~~l-~--es~~I~~yL~~ 75 (77)
T cd03041 15 LVREVLTELELDVILYPCPKGSPK-RDKFLEKG-GKVQVPYLVDPNTGVQM-F--ESADIVKYLFK 75 (77)
T ss_pred HHHHHHHHcCCcEEEEECCCChHH-HHHHHHhC-CCCcccEEEeCCCCeEE-E--cHHHHHHHHHH
Confidence 445566778999998887644322 23333334 35889987542123444 2 24555555544
No 51
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=25.09 E-value=73 Score=21.35 Aligned_cols=61 Identities=8% Similarity=0.079 Sum_probs=33.6
Q ss_pred HHHHHHhCCCcEEEEecChhhHhc-ccEEEEecCCCceEEEEEEeeCCeEEeeCCCccHHHHHHHHH
Q 023788 192 IIEIASDCGFQVEERAIPVDELLE-ADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYST 257 (277)
Q Consensus 192 ll~~a~~~g~~v~e~~i~~~eL~~-adevfltns~~gi~pV~~i~~~~~~i~~~~~~g~~~~~l~~~ 257 (277)
+.-.+++.|++.+...+...+-.. .++..-.| -.|-+|+-..+ +|..+. ....+++.|-+.
T Consensus 14 v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~n-p~~~vP~l~~~-~g~~l~---eS~aI~~yL~~~ 75 (77)
T cd03057 14 PHIALEELGLPFELVRVDLRTKTQKGADYLAIN-PKGQVPALVLD-DGEVLT---ESAAILQYLADL 75 (77)
T ss_pred HHHHHHHcCCCceEEEEecccCccCCHhHHHhC-CCCCCCEEEEC-CCcEEE---cHHHHHHHHHHh
Confidence 444566678888777665543222 22333334 45888987653 355542 245666665543
No 52
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=24.41 E-value=90 Score=25.03 Aligned_cols=63 Identities=19% Similarity=0.155 Sum_probs=42.3
Q ss_pred HHHHHHhcCCCeEEEEccCCCCeEEeeCceeEEE---EECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEE
Q 023788 135 AISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFI---LKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEE 205 (277)
Q Consensus 135 a~~ea~~~g~de~llld~~~~G~v~E~t~sNvf~---v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e 205 (277)
+...|.+.|++- |..-.+ .+...+....|+.- ..+-.+++|-+ ++++.-|.++++++|++.--
T Consensus 95 ~~~~A~~~g~~~-I~~G~~-~~D~~~~~~~~l~~~~~~~~~~i~rPl~------~~~K~eI~~~a~~~gl~~~~ 160 (177)
T cd01712 95 AEKLAEELGADA-IVTGES-LGQVASQTLENLLVISSGTDLPILRPLI------GFDKEEIIGIARRIGTYDIS 160 (177)
T ss_pred HHHHHHHcCCCE-EEEccC-cccchHHHHHhhhhcccCCCCeEECCCC------CCCHHHHHHHHHHcCCccee
Confidence 556788888864 444332 24466666666653 23567888763 88999999999999876543
No 53
>PRK13740 conjugal transfer protein TraY; Provisional
Probab=23.95 E-value=33 Score=23.47 Aligned_cols=9 Identities=22% Similarity=0.246 Sum_probs=4.7
Q ss_pred eChhhHHHH
Q 023788 14 FRPDQNAIR 22 (277)
Q Consensus 14 f~l~~Hl~R 22 (277)
++|.+||.|
T Consensus 43 lRL~DHL~r 51 (70)
T PRK13740 43 IRLRDHLKR 51 (70)
T ss_pred HHHHHHHHh
Confidence 345555555
No 54
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=23.83 E-value=1.2e+02 Score=21.03 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=26.0
Q ss_pred CEEEccCCCCCcccchHHHHHHHHHHhCCCcEEE
Q 023788 172 NIISTPATSGTILAGITRKSIIEIASDCGFQVEE 205 (277)
Q Consensus 172 g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e 205 (277)
.+.+-|.+.+-++.+..-+.+++.|++.|++|.-
T Consensus 27 hT~V~~~~rGqGia~~L~~~~l~~a~~~~~kv~p 60 (78)
T PF14542_consen 27 HTEVPPELRGQGIAKKLVEAALDYARENGLKVVP 60 (78)
T ss_dssp EEEE-CSSSTTTHHHHHHHHHHHHHHHTT-EEEE
T ss_pred EEEECccccCCcHHHHHHHHHHHHHHHCCCEEEE
Confidence 3566677777789999999999999999988763
No 55
>PF03683 UPF0175: Uncharacterised protein family (UPF0175); InterPro: IPR005368 This entry contains small proteins of unknown function.
Probab=20.93 E-value=74 Score=21.99 Aligned_cols=31 Identities=26% Similarity=0.440 Sum_probs=25.1
Q ss_pred CCcccchHHHHHHHHHHhCCCcEEEEecChhhHh
Q 023788 181 GTILAGITRKSIIEIASDCGFQVEERAIPVDELL 214 (277)
Q Consensus 181 ~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~ 214 (277)
..-+.|++|.-.++.+++.|+++ ..+.+||.
T Consensus 40 AAelag~s~~eF~~~L~~~gI~~---~~~~eel~ 70 (76)
T PF03683_consen 40 AAELAGMSRWEFLELLKERGIPI---NYDEEELE 70 (76)
T ss_pred HHHHhCCCHHHHHHHHHHCCCCC---CCCHHHHH
Confidence 34578999999999999999873 37777775
No 56
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=20.63 E-value=2.3e+02 Score=23.28 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=27.9
Q ss_pred chHHHHHHHHH---Hh-CCCcEEEEecC-----------------------hhhHhcccEEEEecCCC
Q 023788 186 GITRKSIIEIA---SD-CGFQVEERAIP-----------------------VDELLEADEVFCTGTAV 226 (277)
Q Consensus 186 GitR~~ll~~a---~~-~g~~v~e~~i~-----------------------~~eL~~adevfltns~~ 226 (277)
|-|++.+-..+ ++ .|.+++...+. .++|.+||.+++.+.+.
T Consensus 13 G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsPty 80 (200)
T PRK03767 13 GHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDELADYDAIIFGTPTR 80 (200)
T ss_pred CHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEEeccc
Confidence 77776655444 34 67777666553 68888999888877654
No 57
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=20.55 E-value=1.1e+02 Score=21.72 Aligned_cols=29 Identities=38% Similarity=0.438 Sum_probs=22.4
Q ss_pred cchHHHHHHHHHHhCCCcEEEEecChhhH
Q 023788 185 AGITRKSIIEIASDCGFQVEERAIPVDEL 213 (277)
Q Consensus 185 ~GitR~~ll~~a~~~g~~v~e~~i~~~eL 213 (277)
.|-.-+.|++.|++.|+++.|.+-....|
T Consensus 25 ~g~~A~~I~~~A~e~~VPi~~~~~LAr~L 53 (82)
T TIGR00789 25 VGEVAERIIEIAKKHGIPIVEDPDLVDVL 53 (82)
T ss_pred CCHHHHHHHHHHHHcCCCEEeCHHHHHHH
Confidence 57778999999999999998765443333
No 58
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=20.19 E-value=2.8e+02 Score=19.94 Aligned_cols=30 Identities=13% Similarity=0.067 Sum_probs=23.4
Q ss_pred cchHHHHHHHHHHhCCCcEEEEecChhhHh
Q 023788 185 AGITRKSIIEIASDCGFQVEERAIPVDELL 214 (277)
Q Consensus 185 ~GitR~~ll~~a~~~g~~v~e~~i~~~eL~ 214 (277)
-+++-..+-+.+++.|++++-...+..++.
T Consensus 16 SS~l~~k~~~~~~~~gi~~~v~a~~~~~~~ 45 (95)
T TIGR00853 16 TSLLVNKMNKAAEEYGVPVKIAAGSYGAAG 45 (95)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEecHHHHH
Confidence 445567777888899999988888887773
Done!