Query 023788
Match_columns 277
No_of_seqs 221 out of 1173
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 12:48:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023788.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023788hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dth_A Branched-chain amino ac 100.0 2.2E-60 7.6E-65 430.9 33.4 277 1-277 84-372 (372)
2 4dqn_A Putative branched-chain 100.0 2.4E-59 8.4E-64 421.7 33.7 276 1-277 64-344 (345)
3 3uzo_A Branched-chain-amino-ac 100.0 9.7E-59 3.3E-63 419.1 31.0 274 1-276 79-358 (358)
4 3dtg_A Branched-chain amino ac 100.0 4.1E-58 1.4E-62 417.8 33.3 277 1-277 84-372 (372)
5 3u0g_A Putative branched-chain 100.0 2E-57 6.9E-62 406.8 31.8 262 1-276 62-328 (328)
6 2a1h_A Branched chain aminotra 100.0 9.7E-57 3.3E-61 408.3 32.9 272 1-276 78-365 (365)
7 2coi_A Branched chain aminotra 100.0 4.5E-56 1.5E-60 405.7 32.1 273 1-277 98-386 (386)
8 2eiy_A ILVE, branched-chain am 100.0 1.6E-55 5.5E-60 392.8 32.2 260 2-277 37-306 (308)
9 1iye_A Branched-chain amino ac 100.0 2.1E-55 7E-60 392.3 31.3 261 3-277 39-308 (309)
10 1i2k_A 4-amino-4-deoxychorisma 100.0 3.7E-51 1.3E-55 358.1 28.9 238 2-260 27-267 (269)
11 3daa_A D-amino acid aminotrans 100.0 5.4E-51 1.9E-55 358.0 28.5 241 2-262 32-276 (277)
12 2xpf_A 4-amino-4-deoxychorisma 100.0 2.7E-50 9.1E-55 356.2 27.9 238 2-262 49-290 (292)
13 3lul_A 4-amino-4-deoxychorisma 100.0 4.7E-50 1.6E-54 351.3 27.6 236 2-264 31-269 (272)
14 3csw_A BCAT, putative branched 100.0 1.1E-49 3.7E-54 351.2 26.6 239 2-274 44-284 (285)
15 3sno_A Hypothetical aminotrans 100.0 6E-49 2.1E-53 350.1 21.9 240 2-261 51-313 (315)
16 3qqm_A MLR3007 protein; struct 100.0 4.7E-44 1.6E-48 304.0 20.2 199 2-233 20-220 (221)
17 2zgi_A Putative 4-amino-4-deox 100.0 1.1E-43 3.7E-48 306.8 17.7 199 2-235 26-229 (246)
18 3ceb_A D-aminoacid aminotransf 100.0 3.4E-39 1.2E-43 269.1 17.5 182 2-228 9-194 (194)
19 2kyr_A Fructose-like phosphotr 46.1 24 0.00083 25.5 4.1 45 181-225 16-70 (111)
20 2lqo_A Putative glutaredoxin R 40.4 16 0.00053 25.3 2.3 48 192-241 20-67 (92)
21 3mcb_B Transcription factor BT 34.1 62 0.0021 20.4 4.1 43 142-188 5-55 (58)
22 2r48_A Phosphotransferase syst 33.3 41 0.0014 24.0 3.6 45 181-225 13-67 (106)
23 2fz5_A Flavodoxin; alpha/beta 33.0 84 0.0029 22.3 5.5 42 185-226 10-57 (137)
24 2h8b_A Insulin-like 3; insulin 31.6 4.6 0.00016 20.8 -1.2 17 180-196 8-24 (26)
25 2bmv_A Flavodoxin; electron tr 31.3 51 0.0017 24.8 4.1 45 185-230 12-61 (164)
26 3lkx_A Transcription factor BT 30.8 58 0.002 21.1 3.6 43 142-188 5-55 (66)
27 2m1z_A LMO0427 protein; homolo 29.5 37 0.0013 24.3 2.8 45 181-225 13-67 (106)
28 2r4q_A Phosphotransferase syst 27.9 88 0.003 22.3 4.5 45 181-225 13-67 (106)
29 3bzy_B ESCU; auto cleavage pro 22.8 74 0.0025 21.6 3.2 30 185-214 25-54 (83)
30 5nul_A Flavodoxin; electron tr 22.4 1.1E+02 0.0038 21.9 4.5 43 185-227 9-57 (138)
No 1
>3dth_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Probab=100.00 E-value=2.2e-60 Score=430.86 Aligned_cols=277 Identities=40% Similarity=0.774 Sum_probs=250.4
Q ss_pred CceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCC-CCccEEEEEEEEecCCCcccC
Q 023788 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPP-GKGSLYIRPLLVGSGPILGLA 79 (277)
Q Consensus 1 ~~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~-~~~~~~ir~~~~g~~~~~~~~ 79 (277)
||+|+..||++++|++++|++||.+||+.|+||.++.++|.+.+.++++.|+.|+|+. ..+.+|||+++.++++.+|+.
T Consensus 84 lkay~~~dG~i~lFrl~~H~~RL~~Sa~~L~mp~~~~e~l~~~i~~lv~~n~~~vp~~~~~~~lYiRp~~~~~~~~~G~~ 163 (372)
T 3dth_A 84 LKAYRWADGSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRPFVIATEPGLGVR 163 (372)
T ss_dssp EEEEECTTSCEEEESHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHGGGSCCSSSSCEEEEEEEEEECCCCSSCS
T ss_pred EEEEECCCCcEeecCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCCCcEEEEEEEEcCCCcCCcC
Confidence 5788888999989999999999999999999995589999999999999999888864 346899999888777677888
Q ss_pred CCCCcEEEEEEEecCccccCCCcCeEEEeeecccccCCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCCCeEE
Q 023788 80 PAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLE 159 (277)
Q Consensus 80 ~~~~~~~~i~~~p~~~~~~~g~~~i~l~~~~~~~r~~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~G~v~ 159 (277)
|+..++++|++.|.++++..|.+++++.+++++.|..|+.++.+|+..||+.+++|+++|+++|+||+||+|..++|+|+
T Consensus 164 p~~~~~~~i~~~p~~~y~~~g~~~v~l~v~~~~~R~~p~g~~~~K~~gNY~~~~la~~eA~~~G~de~l~ld~~~~g~v~ 243 (372)
T 3dth_A 164 PSNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGGTGAAKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVE 243 (372)
T ss_dssp CCSEEEEEEEEEEESCSSSCSSSCEEEEECSSCCSCCTTSSTTSCCHHHHHTTHHHHHHHHHTTCSEEEEECTTTSCBEE
T ss_pred CCCCeEEEEEEeeCchhhccCCccEEEEEccceeccCCCcccchhhHhhhHHHHHHHHHHHHcCCCEEEEEcCCCCCEEE
Confidence 77778899999999988877888999888777889888889999995699999999999999999999999963259999
Q ss_pred eeCceeEEEEECC----EEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcc------cEEEEecCCCceE
Q 023788 160 EVSSCNIFILKGN----IISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEA------DEVFCTGTAVVVA 229 (277)
Q Consensus 160 E~t~sNvf~v~~g----~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~a------devfltns~~gi~ 229 (277)
|++++|||+++++ +|+|||++.++|+||||+.||++|+++|++|+|+.++++||.+| ||+|+|||+.+|+
T Consensus 244 E~~~sNif~v~~~~~g~~l~TP~l~~~iL~GITR~~vl~la~~~G~~v~Er~i~~~eL~~a~~~g~~dEvf~tgTa~~i~ 323 (372)
T 3dth_A 244 EMGGMNLFFVFGSGGSARLVTPELSGSLLPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVIT 323 (372)
T ss_dssp EETTEEEEEEESCGGGCEEEECCCCSSSCCCHHHHHHHHHHHHHTCEEEECCCBHHHHHHHHHHTSEEEEEEEETTTEEE
T ss_pred EcCceeEEEEECCCCceEEEECCCCCCcCHHHHHHHHHHHHHHCCCeEEEEECCHHHHHhhhhcCCccEEEEecccceEE
Confidence 9999999999998 99999999999999999999999999999999999999999999 9999999999999
Q ss_pred EEEEEeeCCeEEeeC-CCccHHHHHHHHHHHHhHhcCCCCCCCCceecC
Q 023788 230 PVGSITYRGKRIEFK-TGAQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 277 (277)
Q Consensus 230 pV~~i~~~~~~i~~~-~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 277 (277)
||.+|+..++.+.++ +.+||+|++|+++|.++++|+.+|.++|+++||
T Consensus 324 PV~~Id~~~~~~~i~~g~~Gpvt~~L~~~l~~iq~g~~~d~~~W~~~v~ 372 (372)
T 3dth_A 324 PVSHVKHHDGEFTIADGQPGEITMALRDTLTGIQRGTFADTHGWMARLN 372 (372)
T ss_dssp EEEEEEETTEEEECTTSSCCHHHHHHHHHHHHHHHTSSCCTTCCEEECC
T ss_pred EEEEEccCCceEECCCCCcCHHHHHHHHHHHHHHcCCCCCCCCCeEECC
Confidence 999998654443333 458999999999999999999999999999996
No 2
>4dqn_A Putative branched-chain amino acid aminotransfera; aminotransferase, transferase; 1.97A {Streptococcus mutans}
Probab=100.00 E-value=2.4e-59 Score=421.68 Aligned_cols=276 Identities=44% Similarity=0.731 Sum_probs=243.0
Q ss_pred CceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCCC-CccEEEEEEEEecCCCcccC
Q 023788 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPG-KGSLYIRPLLVGSGPILGLA 79 (277)
Q Consensus 1 ~~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~-~~~~~ir~~~~g~~~~~~~~ 79 (277)
||+|+-.||++++|+|++|++||.+||+.|+|+.++.+++.+.+.+++++|+.|+|+.. .+.+|||++++++++.+|+.
T Consensus 64 ir~~~g~dg~~~~f~l~~Hl~RL~~Sa~~L~i~~~~~~~l~~~i~~lv~~n~~~vp~~~~~~~~yiR~~v~~~~~~~g~~ 143 (345)
T 4dqn_A 64 LKAYRTKDGSVQLFRPNMNAERLQRTADRLLMPQVPTDKFIDAAKQVVRANEEYVPPYGTGATLYLRPLLIGVGDVIGVH 143 (345)
T ss_dssp EEEEECTTSCEEEESHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCCTTSSCEEEEEEEEEEESCCCSSC
T ss_pred EEEEeCCCCcccccCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCCCcEEEEEEEEeCCCccCCC
Confidence 46777777887789999999999999999999955999999999999999998877532 34799999888777677887
Q ss_pred CCCCcEEEEEEEecCccccCCCcCeEEEeeecccccCCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCCCeEE
Q 023788 80 PAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLE 159 (277)
Q Consensus 80 ~~~~~~~~i~~~p~~~~~~~g~~~i~l~~~~~~~r~~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~G~v~ 159 (277)
|+..++++|++.|+++++..+.+++++.+++++.|..|+.++++||..||+.+++|+++|+++|+||+||+|.+++|+|+
T Consensus 144 p~~~~~~~i~~~p~~~~~~~~~~gv~l~~~~~~~R~~~~~~~~~Kt~~nyl~~vla~~eA~~~G~de~l~ld~~~~g~v~ 223 (345)
T 4dqn_A 144 PADEYIFTIFAMPVGNYFKGGLAPTNFLIQDDYDRAAPHGTGAAKVGGNYAASLLPGKVAHERQFSDVIYLDPATHTKIE 223 (345)
T ss_dssp CCSEEEEEEEEEEECCSCTTSCCCEEEEECTTCCSSCTTSSTTSCCHHHHHHHHHHHHHHHHTTCSCEEEECTTTSCBEE
T ss_pred CCCCeEEEEEEEECccccccCCCCEEEEEccceEecCCCccccccccccCHHHHHHHHHHHHCCCCEEEEEcCCCCCeEE
Confidence 76678889999998887766667888888765788888889999994499999999999999999999999972139999
Q ss_pred eeCceeEEEE-ECCEEEccCCCCCcccchHHHHHHHHHHh-CCCcEEEEecChhhHhcccEEEEecCCCceEEEEEEeeC
Q 023788 160 EVSSCNIFIL-KGNIISTPATSGTILAGITRKSIIEIASD-CGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYR 237 (277)
Q Consensus 160 E~t~sNvf~v-~~g~l~TP~l~~~~L~GitR~~ll~~a~~-~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~i~~~ 237 (277)
|++++|||++ +||+|+||| +.++|+||||+.||++|++ +|++|+|+.++++||.+|||+|+|||+.||+||.+|+..
T Consensus 224 E~~~sNif~v~~~g~l~TP~-~~~iL~GitR~~vl~la~~~~g~~v~e~~i~~~el~~adevf~t~t~~~i~PV~~Id~~ 302 (345)
T 4dqn_A 224 EVGSANFFGITKDNEFITPL-SPSILPSVTKYSLLYLAEHRFGMKAIEGDVCVDELDKFVEAGACGTAAVISPIGGVQHG 302 (345)
T ss_dssp EETTEEEEEEETTCEEEECC-CTTSCCCHHHHHHHHHHHHTTCCEEEECCCBTTCGGGEEEEEEEETTTEEEEEEEEEET
T ss_pred EcCCceEEEEecCCEEEeCC-CCCccHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHhhhHHhhhcchhHEEEEEEECcc
Confidence 9999999998 899999999 9999999999999999999 999999999999999999999999999999999999854
Q ss_pred CeEEeeC-C-CccHHHHHHHHHHHHhHhcCCCCCCCCceecC
Q 023788 238 GKRIEFK-T-GAQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 277 (277)
Q Consensus 238 ~~~i~~~-~-~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 277 (277)
++.+.++ + .+||+|++|+++|.++++|+.+|+++|+++|.
T Consensus 303 ~~~~~i~~~~~~Gpvt~~L~~~~~~i~~g~~~~~~~W~~~v~ 344 (345)
T 4dqn_A 303 DDFHVFYSETEVGPVTHKLYDELTGIQFGDVKAPEGWIYKVD 344 (345)
T ss_dssp TEEEESSCSSSCCHHHHHHHHHHHHHHTTSSCCCTTCEEETT
T ss_pred cceeeeCCCCCcCHHHHHHHHHHHHHHcCCCCCCCCCceECC
Confidence 4433233 2 48999999999999999999999999999983
No 3
>3uzo_A Branched-chain-amino-acid aminotransferase; BCAT, amino-acid biosynthesis, branched-CH acid biosynthesis, pyridoxal phosphate, L-GLUT; HET: PLP GLU; 2.00A {Deinococcus radiodurans} PDB: 3uzb_A* 3uyy_A*
Probab=100.00 E-value=9.7e-59 Score=419.14 Aligned_cols=274 Identities=43% Similarity=0.718 Sum_probs=242.9
Q ss_pred CceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCC-ccEEEEEEEEecCCCcccC
Q 023788 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGK-GSLYIRPLLVGSGPILGLA 79 (277)
Q Consensus 1 ~~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~-~~~~ir~~~~g~~~~~~~~ 79 (277)
||+|+..||++++|++++|++||.+||+.|+|+.++.+++.+.+.++++.|+.|+|+.+. +.+|||++++++++.+|+.
T Consensus 79 ir~y~~~dG~i~lfrl~~Hl~RL~~Sa~~L~ip~~~~e~l~~~i~~lv~~n~~~vp~~~~~~~~yiR~~v~~~~~~~G~~ 158 (358)
T 3uzo_A 79 LKAYRCADGSINLFRPDQNAARMRMSCRRLLMPELSDEQFIDACLQVVRANEHFLPPYGTGGSLYLRPFVIGVGDNIGVR 158 (358)
T ss_dssp EEEEECTTSCEEECCHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCCTTSCCEEEEEEEEEEESSCCSSS
T ss_pred EEEEECCCCcEeecCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCcCCCCCCCceEEEEEEEEecCCccccC
Confidence 577888899998999999999999999999999559999999999999999988876433 4799999988777778888
Q ss_pred CCCCcEEEEEEEecCccccCCCcCeEEEeeecccccCCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCCCeEE
Q 023788 80 PAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLE 159 (277)
Q Consensus 80 ~~~~~~~~i~~~p~~~~~~~g~~~i~l~~~~~~~r~~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~G~v~ 159 (277)
|+..+.+++++.|.++++..|.+++++.+++ ++|..|..++++|+..||+.+++|+++|+++|+||+||+|.+++|+|+
T Consensus 159 p~~~~~~~i~~~P~~~~~~~g~~~v~l~~~~-~~R~~p~~~~~~K~~~NYl~~vla~~eA~~~G~~e~l~ld~~~~g~V~ 237 (358)
T 3uzo_A 159 TAPEFIFSVFCVPVGPYFKGGLTPTNFITSD-YDRAAPHGTGAAKVGGNYAASLLPGYEAKKRDFADVIYLDPATHTTIE 237 (358)
T ss_dssp CCSEEEEEEEEEEECCSSCSSSCCEEEECCS-CCSSCTTSSTTSCBHHHHHHHHHHHHHHHHTTCSEECCBCTTTSCBBC
T ss_pred CCCCeEEEEEEecChhhhhcCCccEEEEEEe-eeccCCCccccccchhhhHHHHHHHHHHHHcCCCEEEEEeCCCCCeEE
Confidence 7667788889999988887788889887764 788888888999964599999999999999999999999972139999
Q ss_pred eeCceeEEEEE-CCE-EEccCCCCCcccchHHHHHHHHHHh-CCCcEEEEecChhhHhcccEEEEecCCCceEEEEEEee
Q 023788 160 EVSSCNIFILK-GNI-ISTPATSGTILAGITRKSIIEIASD-CGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITY 236 (277)
Q Consensus 160 E~t~sNvf~v~-~g~-l~TP~l~~~~L~GitR~~ll~~a~~-~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~i~~ 236 (277)
|++++|||+++ ||+ |+||| ++++|+||||+.||++|++ +|++|+|+.++++||.+|||+|+|||+.+|+||.+|+.
T Consensus 238 E~~~sNif~v~~dg~~l~TP~-~~~iL~GItR~~vl~la~~~~g~~v~e~~i~~~eL~~adEvf~t~t~~~i~PV~~Id~ 316 (358)
T 3uzo_A 238 EAGAANFFAITQDGQKFVTPQ-SPSILPSITKYSLLWLAEHRLGLEVEEGDIRIDELGKFSEAGACGTAAVITPIGGIQH 316 (358)
T ss_dssp BCSSSEEEEEETTSCEEEEEC-CTTSCCCHHHHHHHHHHHHTTCCEEEEECCBTTCGGGEEEEEEECTTTSSEEEEEEEE
T ss_pred EcCCeeEEEEECCCeEEEECC-cCCcccCHHHHHHHHHHHhhcCCeEEEEECCHHHHHhhcceeEEcCcceEEEEEEECc
Confidence 99999999995 788 99999 8999999999999999999 99999999999999999999999999999999999985
Q ss_pred CCeEEeeC--CCccHHHHHHHHHHHHhHhcCCCCCCCCceec
Q 023788 237 RGKRIEFK--TGAQSVSRELYSTLVGIQTGLIKDNKGWTVEI 276 (277)
Q Consensus 237 ~~~~i~~~--~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 276 (277)
.++.+.++ +.+||+|++|+++|.++++|+.+|+++|+++|
T Consensus 317 ~~~~~~i~~~~~~Gpvt~~L~~~~~~iq~g~~~~~~~W~~~v 358 (358)
T 3uzo_A 317 GDDFHVFYSESEPGPVTRRLYDELVGIQYGDKEAPEGWIVKV 358 (358)
T ss_dssp TTEEEESSCSSSCCHHHHHHHHHHHHHHTTSSCCCTTCCEEC
T ss_pred ccceeEeCCCCCcCHHHHHHHHHHHHHHcCCCCCCCCCceEC
Confidence 44433233 24899999999999999999999999999986
No 4
>3dtg_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP; 1.90A {Mycobacterium smegmatis} PDB: 3dtf_A* 3jz6_A* 3ht5_A*
Probab=100.00 E-value=4.1e-58 Score=417.84 Aligned_cols=277 Identities=40% Similarity=0.769 Sum_probs=247.0
Q ss_pred CceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCCC-CccEEEEEEEEecCCCcccC
Q 023788 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPG-KGSLYIRPLLVGSGPILGLA 79 (277)
Q Consensus 1 ~~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~-~~~~~ir~~~~g~~~~~~~~ 79 (277)
||+|+..||++.+|++++|++||.+||+.|+||.++.+.+.+.+.++++.+..++|... ...+|||+++.++++.+|+.
T Consensus 84 iraY~~~dG~i~~Fr~~~h~~Rl~~Sa~~l~iP~~~~e~~~~~~~~l~~~~~~~v~~~~~~~~~YiRp~~~~~~~~lgv~ 163 (372)
T 3dtg_A 84 LKAYRWADGSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRPFVIATEPGLGVR 163 (372)
T ss_dssp EEEEECTTSCEEEESHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHGGGSCCSSSSCEEEEEEEEEECCCCCSCS
T ss_pred EEEEECCCCeEEeeCchHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhccccCCCCceEEEEEEEeecCccCcC
Confidence 68999999999899999999999999999999977888889999999998887877543 35899999988877778888
Q ss_pred CCCCcEEEEEEEecCccccCCCcCeEEEeeecccccCCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCCCeEE
Q 023788 80 PAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLE 159 (277)
Q Consensus 80 ~~~~~~~~i~~~p~~~~~~~g~~~i~l~~~~~~~r~~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~G~v~ 159 (277)
|...+.+++.+.|...++..+.++..+.+...+.|..|......|..+||+++++|+.+|+++|+||+||+|..++|+|+
T Consensus 164 p~~~~~~~ii~~p~~~~~~~~~~~~~~~~~~~~~R~~p~~~~~~K~~gNY~~~~la~~eA~~~G~deal~Ld~~~~g~V~ 243 (372)
T 3dtg_A 164 PSNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGGTGAAKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVE 243 (372)
T ss_dssp CCSEEEEEEEEEEESCSSTTSSSCEEEEECSSCCSCCTTSSTTSCCHHHHHHHHHHHHHHHHTTCSEEEEECTTTSCBEE
T ss_pred CCCCceeeeEecccccccccCcccceeecccceeecCcCCcchHHhcCCcchhhhHHHHHHhcCcchhhhhcccccccee
Confidence 87778888888998888777777776666667788888777778887899999999999999999999999964478999
Q ss_pred eeCceeEEEE----ECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcc------cEEEEecCCCceE
Q 023788 160 EVSSCNIFIL----KGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEA------DEVFCTGTAVVVA 229 (277)
Q Consensus 160 E~t~sNvf~v----~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~a------devfltns~~gi~ 229 (277)
|++.+|||+| |||+++|||++.+||+||||+.||++|+++|++|+|+.++++||.+| ||||+|||+.+|+
T Consensus 244 E~~~sNiF~V~~~~kdg~liTPpl~~~iL~GITR~sVi~LA~~~Gi~V~Er~it~~El~~A~~~~~~dEvF~tGTaa~I~ 323 (372)
T 3dtg_A 244 EMGGMNLFFVFGSGGSARLVTPELSGSLLPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVIT 323 (372)
T ss_dssp EETTEEEEEEESCGGGCEEEECCCCSSSCCCHHHHHHHHHHHHHTCEEEECCCBHHHHHHHHHHTSEEEEEEEETTTEEE
T ss_pred ecCceEEEEEEecCCCceEEeCCccccccccHHHHHHHHHHHHCCceEEEEeCCHHHHHHHhhcCCCcEEEECCCcceEE
Confidence 9999999999 67899999999999999999999999999999999999999999998 9999999999999
Q ss_pred EEEEEeeCCeEEee-CCCccHHHHHHHHHHHHhHhcCCCCCCCCceecC
Q 023788 230 PVGSITYRGKRIEF-KTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 277 (277)
Q Consensus 230 pV~~i~~~~~~i~~-~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 277 (277)
||.+|+..+..+.+ ++++||+|++|+++|.++|+|+.+|+++||++|+
T Consensus 324 PV~~Id~~~~~~~ig~G~~Gpvt~~L~~~~~~iq~G~~~d~~~W~~~v~ 372 (372)
T 3dtg_A 324 PVSHVKHHDGEFTIADGQPGEITMALRDTLTGIQRGTFADTHGWMARLN 372 (372)
T ss_dssp EEEEEEETTEEEECTTSSCCHHHHHHHHHHHHHHTTSSCCTTCCEEECC
T ss_pred EEEEEecCCceEEcCCCCcCHHHHHHHHHHHHHHCCCCCCCCCCcEeCC
Confidence 99999865544323 4568999999999999999999999999999986
No 5
>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei}
Probab=100.00 E-value=2e-57 Score=406.83 Aligned_cols=262 Identities=27% Similarity=0.424 Sum_probs=225.0
Q ss_pred CceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCcccC
Q 023788 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLA 79 (277)
Q Consensus 1 ~~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~~~ 79 (277)
||+|+..||++++|+|++|++||.+||+.|+|+.| +.+++.+.+.+++++|+. .++|||++++++.+.+|+.
T Consensus 62 ir~~~~~dG~~~~f~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~lv~~n~~-------~~~~iR~~vtrg~~~~g~~ 134 (328)
T 3u0g_A 62 VRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMDVPFDQETLEAAQRDVVRENKL-------ESCYLRPIIWIGSEKLGVS 134 (328)
T ss_dssp EEEEECTTSCEEEESHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC-------SSEEEEEEEEECSSCCSTT
T ss_pred EEEEECCCCCeeeCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhcCC-------CCeEEEEEEEecCCCCCcC
Confidence 35555556966679999999999999999999987 899999999999999873 4689998876555457776
Q ss_pred CCC-CcEEEEEEEecCccccCC--CcCeEEEeeecccccCCCC-CCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCC
Q 023788 80 PAP-EYTFLVFASPVGNYFKEG--LAPLNLYVEDEFHRATPGG-AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNK 155 (277)
Q Consensus 80 ~~~-~~~~~i~~~p~~~~~~~g--~~~i~l~~~~~~~r~~~~~-l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~ 155 (277)
|.. .++++|++.|++.++... .+++++.++ ++.|..++. ++++|++.||+.+++|+++|+++|+||+||+|. +
T Consensus 135 p~~~~~~~~i~~~p~~~~~~~~~~~~gv~l~~~-~~~R~~~~~~~~~~K~t~nyl~~vla~~eA~~~G~~e~l~ld~--~ 211 (328)
T 3u0g_A 135 AKGNTIHVAIAAWPWGAYLGEEGLAKGIRVKTS-SFTRHHVNVSMVRAKASGWYVNSILANQEATADGYDEALLLDV--D 211 (328)
T ss_dssp CCCCCEEEEEEEEECC----HHHHHHCEEEEEC-SSCCCCTTTSCTTSCBGGGHHHHHHHHHHHHHTTCSEEEEECT--T
T ss_pred CCCCCcEEEEEEEEcCCCCChhhhcCCEEEEEe-eeeecCCCCcccchhhhhhhHHHHHHHHHHHHCCCCEEEEECC--C
Confidence 543 578888888887653211 135677665 467777765 799994459999999999999999999999998 7
Q ss_pred CeEEeeCceeEEEEECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEEEe
Q 023788 156 KNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSIT 235 (277)
Q Consensus 156 G~v~E~t~sNvf~v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~i~ 235 (277)
|+|+|++++|||+++||+|+|||++. +|+||||+.||++|+++|++|+|+.++++||.+|||+|+|||++||+||.+|+
T Consensus 212 g~v~E~~~sNif~v~~g~l~TP~~~~-iL~GitR~~vl~~a~~~g~~v~e~~i~~~eL~~adevf~tns~~~v~PV~~Id 290 (328)
T 3u0g_A 212 GYVSEGSGENFFLVNRGKLYTPDLAS-CLDGITRDTVITLAKEAGIEVIEKRITRDEVYTADEAFFTGTAAEVTPIRELD 290 (328)
T ss_dssp SCEEEESSSEEEEEETTEEEECCSSS-SCCCHHHHHHHHHHHHTTCCEEECCCCHHHHHTCSEEEEEETTTEEEEEEEET
T ss_pred CcEEEcCceeEEEEECCEEEeCCccc-cchHHHHHHHHHHHHHcCCeEEEEeCCHHHHhhCCEEEEEcchhhEEEEEEEC
Confidence 99999999999999999999999987 99999999999999999999999999999999999999999999999999995
Q ss_pred eCCeEEeeCCCccHHHHHHHHHHHHhHhcCCCCCCCCceec
Q 023788 236 YRGKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEI 276 (277)
Q Consensus 236 ~~~~~i~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 276 (277)
++.++ ++.+||+|++|+++|.++++|+.+|+++|+++|
T Consensus 291 --~~~~~-~g~~g~vt~~L~~~~~~~~~g~~~~~~~W~~~v 328 (328)
T 3u0g_A 291 --NRTIG-GGARGPITEKLQSAFFDVVNGKSAKHADWLTKI 328 (328)
T ss_dssp --TEECT-TSSCCHHHHHHHHHHHHHHTTCCSTTGGGEEEC
T ss_pred --CEECC-CCCCCHHHHHHHHHHHHHHcCCCCCCCCCceeC
Confidence 77763 456899999999999999999999999999987
No 6
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A*
Probab=100.00 E-value=9.7e-57 Score=408.31 Aligned_cols=272 Identities=35% Similarity=0.629 Sum_probs=238.8
Q ss_pred CceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCcccCC
Q 023788 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAP 80 (277)
Q Consensus 1 ~~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~~~~ 80 (277)
||+|+-.||++++|+|++|++||.+||+.|+|+.++.+++.+.+.++++.++.|+|......+|||+++.++++.+|+.|
T Consensus 78 ~r~y~g~dG~i~~f~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~i~~lv~~~~~~~p~~~g~~~yiR~~~~~~~~~~g~~p 157 (365)
T 2a1h_A 78 MKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQ 157 (365)
T ss_dssp EEEEECTTSCEEEESHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCCSTTCEEEEEEEEEECCBCCSCSC
T ss_pred EEEEecCCCceeecCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCceEEEEEEEEecCCccCCCC
Confidence 46666678988889999999999999999999955899999999999999887766422236899998887766678877
Q ss_pred CCCcEEEEEEEecCccccCC-CcCeEEEeeecccccCCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEE-ccCCCCeE
Q 023788 81 APEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYL-DSVNKKNL 158 (277)
Q Consensus 81 ~~~~~~~i~~~p~~~~~~~g-~~~i~l~~~~~~~r~~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~lll-d~~~~G~v 158 (277)
+..++++|++.|+++++..| .+++++.+++.+.|..|+.++++|+..||+.+++|+++|+++|+||+||+ |. +|+|
T Consensus 158 ~~~~~~~i~~~p~~~~~~~g~~~~v~l~~~~~~~R~~~~~~~~~Kt~~ny~~~~la~~eA~~~G~de~L~l~d~--~G~V 235 (365)
T 2a1h_A 158 PRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGP--DHQL 235 (365)
T ss_dssp CSEEEEEEEEEEECCSSSSSSCCCEEEEECTTCCSCCTTSSTTSCBGGGTTTHHHHHHHHHHTTCSEEEEEETT--TTEE
T ss_pred CCCcEEEEEEEECccccccccccceEEEEccccccCCCCccchhchhhccHHHHHHHHHHHHcCCCeEEEEECC--CCeE
Confidence 66788999999998877666 67888887765677778888999985599999999999999999999999 76 7999
Q ss_pred EeeCceeEEEEE---CCE--EEccCCCCCcccchHHHHHHHHHHhC-CCcEEEEecChhhHhcc------cEEEEecCCC
Q 023788 159 EEVSSCNIFILK---GNI--ISTPATSGTILAGITRKSIIEIASDC-GFQVEERAIPVDELLEA------DEVFCTGTAV 226 (277)
Q Consensus 159 ~E~t~sNvf~v~---~g~--l~TP~l~~~~L~GitR~~ll~~a~~~-g~~v~e~~i~~~eL~~a------devfltns~~ 226 (277)
+|++++|||+++ ||+ |+|||+++++|+||||+.||++|+++ |++|+|+.++++||.+| ||+|+|||++
T Consensus 236 ~E~~~sNif~v~~~~dg~~~l~TP~l~~~iL~GITR~~vl~la~~~~G~~v~Er~i~~~eL~~A~~~g~~dEvf~tnt~~ 315 (365)
T 2a1h_A 236 TEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTAC 315 (365)
T ss_dssp EEETTEEEEEEEECTTSCEEEEECCCSSSSCCCHHHHHHHHHHHHHTSSEEEECCCBHHHHHHHHHTTCEEEEEEEETTT
T ss_pred EEcCceEEEEEEecCCCcEEEEeCCCCCCccccHHHHHHHHHHHhcCCCceEEEeCCHHHHHHHHhcCCccEEEEcCCee
Confidence 999999999996 776 99999999999999999999999994 99999999999999999 9999999999
Q ss_pred ceEEEEEEeeCCeEEee--CCCccHHHHHHHHHHHHhHhcCCCCCCCCceec
Q 023788 227 VVAPVGSITYRGKRIEF--KTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEI 276 (277)
Q Consensus 227 gi~pV~~i~~~~~~i~~--~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 276 (277)
||+||.+|+++++.+.+ ++.+||++++|+++|.++++|+.+ ++|+++|
T Consensus 316 ~i~PV~~i~~~~~~~~~~~~g~~g~vt~~L~~~~~~~~~g~~~--~~W~~~v 365 (365)
T 2a1h_A 316 QVCPVHRILYKDRNLHIPTMENGPELILRFQKELKEIQYGIRA--HEWMFPV 365 (365)
T ss_dssp EEEEEEEEEETTEEEECTTGGGTTHHHHHHHHHHHHHHTTSSC--CTTEEEC
T ss_pred EEEEEEEEEeCCeEEeeCCCCCcCHHHHHHHHHHHHHHcCCCC--CCCeeeC
Confidence 99999999876777644 235799999999999999999988 9999986
No 7
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A*
Probab=100.00 E-value=4.5e-56 Score=405.69 Aligned_cols=273 Identities=34% Similarity=0.632 Sum_probs=238.1
Q ss_pred CceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCcccCC
Q 023788 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAP 80 (277)
Q Consensus 1 ~~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~~~~ 80 (277)
||+|+-.||++++|++++|++||.+||+.|+|+.++.+++.+.+.++++.++.|+|....+.+|||+++.|+++.+|+.|
T Consensus 98 ~k~y~g~dg~i~~frld~H~~RL~~Sa~~l~~p~~~~e~~~~~i~~lv~~~~~~vp~~~g~~~yiR~~~~~~~~~~g~~p 177 (386)
T 2coi_A 98 LKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKK 177 (386)
T ss_dssp EEEEECTTSCEEEESHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCSSSSCEEEEEEEEEECCCSCSCSC
T ss_pred EEEEeCCCCceeecCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCCCCCCccEEEEEEEEecCCccccCC
Confidence 57888888888899999999999999999999955899999999999999987776433357999998887776678887
Q ss_pred CCCcEEEEEEEecCccccCC-CcCeEEEeeecccccCCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEEc-cCCCCeE
Q 023788 81 APEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLD-SVNKKNL 158 (277)
Q Consensus 81 ~~~~~~~i~~~p~~~~~~~g-~~~i~l~~~~~~~r~~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld-~~~~G~v 158 (277)
+.+++++|++.|.++++..| .+++++.+++...|..|..+..+|+..||+.+++++++|+++|+||+||+| . +|+|
T Consensus 178 ~~~~~~~i~~~p~~~y~~~~~~~~v~l~~~~~~~r~~p~~~g~~K~~~Ny~~~~la~~eA~~~G~de~L~ld~~--~g~V 255 (386)
T 2coi_A 178 PTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDNGCQQVLWLYGE--DHQI 255 (386)
T ss_dssp CSEEEEEEEEEEECCCC-----CCEEEEECTTCCSCCTTSSTTSCCTHHHHTTHHHHHHHHTTTCSEEEEEETT--TTEE
T ss_pred CCCcEEEEEEEECcccccccccccEEEEEcccccccCCCcccccccccChHHHHHHHHHHHHcCCCEEEEEECC--CCEE
Confidence 77888999999998877666 678888876655576777678899855999999999999999999999999 5 7999
Q ss_pred EeeCceeEEEEE---CC--EEEccCCCCCcccchHHHHHHHHHHh-CCCcEEEEecChhhHhcc------cEEEEecCCC
Q 023788 159 EEVSSCNIFILK---GN--IISTPATSGTILAGITRKSIIEIASD-CGFQVEERAIPVDELLEA------DEVFCTGTAV 226 (277)
Q Consensus 159 ~E~t~sNvf~v~---~g--~l~TP~l~~~~L~GitR~~ll~~a~~-~g~~v~e~~i~~~eL~~a------devfltns~~ 226 (277)
+|++++|||+++ || +|+|||+++++|+||||+.||++|++ +|++|+|+.++++||.+| ||+|+|||+.
T Consensus 256 ~E~~~sNiF~v~~~~~g~~~l~TP~l~~~iL~GITR~~vl~la~~~~G~~V~Er~i~~~eL~~A~~~g~~dEvF~tgTa~ 335 (386)
T 2coi_A 256 TEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSGTAC 335 (386)
T ss_dssp EEETTEEEEEEEECTTSCEEEEECCCSSSSCCCHHHHHHHHHHHHHCSSEEEECCCBHHHHHHHHTTTCEEEEEEEETTT
T ss_pred EEeCCceEEEEEEcCCCCEEEEECCCCCCccHHHHHHHHHHHHHhccCCcEEEEECCHHHHHHHHhcCCccEEEEeccee
Confidence 999999999997 88 99999999999999999999999999 899999999999999999 9999999999
Q ss_pred ceEEEEEEeeCCeEEeeC--CCccHHHHHHHHHHHHhHhcCCCCCCCCceecC
Q 023788 227 VVAPVGSITYRGKRIEFK--TGAQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 277 (277)
Q Consensus 227 gi~pV~~i~~~~~~i~~~--~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 277 (277)
+|+||.+|++.++.+.++ +.+||+|++|+++|.++++|+.+ ++|+++|.
T Consensus 336 ~i~PV~~I~~~~~~~~~~~~g~~g~vt~~L~~~l~~iq~g~~~--~~W~~~v~ 386 (386)
T 2coi_A 336 VVCPVSDILYKGETIHIPTMENGPKLASRILSKLTDIQYGREE--RDWTIVLS 386 (386)
T ss_dssp EEEEEEEEEESSSEEECGGGGGTTHHHHHHHHHHHHHHTTSSC--CTTEEEC-
T ss_pred EEEEEEEEeeCCeEEecCCCCCcCHHHHHHHHHHHHHhCCCCC--CCCeEeCC
Confidence 999999998767776542 34799999999999999999987 79999873
No 8
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Probab=100.00 E-value=1.6e-55 Score=392.81 Aligned_cols=260 Identities=30% Similarity=0.389 Sum_probs=221.8
Q ss_pred ceEecCCC----cEeeeChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCc
Q 023788 2 KAYRKEDG----QLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPIL 76 (277)
Q Consensus 2 ~~~rv~~G----~~~~f~l~~Hl~RL~~sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~ 76 (277)
.++|+++| + +|+|++|++||.+||+.|+|+.| +.+++.+.+.+++++++. +.+|||++++++++.+
T Consensus 37 Etir~~~g~~g~~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~i~~~~~~~~~-------~~~~iR~~v~~g~~~~ 107 (308)
T 2eiy_A 37 EGIRAYETAKGPA--IFRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKEVVRRNGY-------RSCYIRPLAWMGAKAL 107 (308)
T ss_dssp CCEEEECCTTSCE--EETHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC-------SSEEEEEEEECCSSCC
T ss_pred EEEEEECCCCccc--ccCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCC-------CcEEEEEEEEecCCcc
Confidence 35677777 6 48999999999999999999976 899999999999998762 4678998887555456
Q ss_pred ccCCC--CCcEEEEEEEecCccccCC--CcCeEEEeeecccccCCC-CCCCCccccCcHHHHHHHHHHHhcCCCeEEEEc
Q 023788 77 GLAPA--PEYTFLVFASPVGNYFKEG--LAPLNLYVEDEFHRATPG-GAGGVKAISNYAPVLKAISRAKNRGFSDVLYLD 151 (277)
Q Consensus 77 ~~~~~--~~~~~~i~~~p~~~~~~~g--~~~i~l~~~~~~~r~~~~-~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld 151 (277)
++.|. ..+++++.+.|++.++..+ .+++++.++ ++.|..++ .++++||++||+.+++++++|+++|+||+||+|
T Consensus 108 ~~~p~~~~~~~~~i~~~p~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~~Kt~~ny~~~~la~~~A~~~G~de~l~ld 186 (308)
T 2eiy_A 108 GVNPLPNNPAEVMVAAWEWGAYLGEEAVRKGARLITS-SWARFPANVMPGKAKVGGNYVNSALAKMEAVAAGADEALLLD 186 (308)
T ss_dssp SSCCGGGCSCEEEEEEEEC--------CCSCEEEEEC-SSCBCCTTTSCTTSCBGGGHHHHHHHHHHHHHTTCSEEEEEB
T ss_pred CcCCCCCCCeEEEEEEEEcCccCCcccccCCeEEEEe-cceecCCCCcCcceehhhhHHHHHHHHHHHHHcCCCEEEEEC
Confidence 77654 4678888888887654322 246777765 45676665 468999986699999999999999999999999
Q ss_pred cCCCCeEEeeCceeEEEEECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEE
Q 023788 152 SVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPV 231 (277)
Q Consensus 152 ~~~~G~v~E~t~sNvf~v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV 231 (277)
+ +|+|+|+++||||+++||+|+|||+++ +|+||||+.||++|+++|++|+|+.++++||.+|||+|+|||++||+||
T Consensus 187 ~--~G~V~Egs~sNif~v~~g~l~TP~~~~-iL~GitR~~ll~~a~~~g~~v~E~~i~~~dL~~adevfltns~~gv~pV 263 (308)
T 2eiy_A 187 E--EGYVAEGSGENLFFVRDGVIYALEHSV-NLEGITRDSVIRIAKDLGYEVQVVRATRDQLYMADEVFMTGTAAEVTPV 263 (308)
T ss_dssp T--TSSEEEESSCEEEEEETTEEEEECCTT-SCCCHHHHHHHHHHHHTTCCEEEECCCHHHHHTCSEEEEEETTTEEEEE
T ss_pred C--CCeEEEcCceEEEEEECCEEEeCCcCC-CCchHHHHHHHHHHHHCCCeEEEEeCCHHHHhhCCEEEEccCcceEEEE
Confidence 7 799999999999999999999999988 9999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCeEEeeCCCccHHHHHHHHHHHHhHhcCCCCCCCCceecC
Q 023788 232 GSITYRGKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 277 (277)
Q Consensus 232 ~~i~~~~~~i~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 277 (277)
.+|+ ++.++ .+.+||++++|+++|.++++|+.+++++|+++|.
T Consensus 264 ~~id--~~~~~-~g~~g~~~~~l~~~~~~~~~~~~~~~~~w~~~v~ 306 (308)
T 2eiy_A 264 SMID--WRPIG-KGTAGPVALRLREVYLEAVTGRRPEYEGWLTYVN 306 (308)
T ss_dssp EEET--TEECT-TSSCCHHHHHHHHHHHHHHTTCCGGGGGGEEECC
T ss_pred EEEc--CEECC-CCCCCHHHHHHHHHHHHHHcCCCCCccCCCeeCC
Confidence 9985 77753 3457999999999999999999999999999973
No 9
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Probab=100.00 E-value=2.1e-55 Score=392.35 Aligned_cols=261 Identities=30% Similarity=0.493 Sum_probs=224.8
Q ss_pred eEecC---CCcEeeeChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCccc
Q 023788 3 AYRKE---DGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGL 78 (277)
Q Consensus 3 ~~rv~---~G~~~~f~l~~Hl~RL~~sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~~ 78 (277)
++|++ ||+ ++|+|++|++||.+||+.|+|+.| +.+++.+.+.++++.++. +.+|||++++++++.+|+
T Consensus 39 tir~~~~~~G~-~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~i~~~~~~~~~-------~~~~iR~~v~~g~~~~g~ 110 (309)
T 1iye_A 39 GIRCYDSHKGP-VVFRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDVIRKNNL-------TSAYIRPLIFVGDVGMGV 110 (309)
T ss_dssp CEEEECCTTSS-EEETHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHTTC-------SSEEEEEEEEECSSCSSS
T ss_pred EEEEEECCCCc-EEcCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCC-------CCEEEEEEEEeCCCccCC
Confidence 45666 883 258999999999999999999976 899999999999998762 467899887765555677
Q ss_pred CCC--CCcEEEEEEEecCccccCC--CcCeEEEeeecccccCCCC-CCCCccccCcHHHHHHHHHHHhcCCCeEEEEccC
Q 023788 79 APA--PEYTFLVFASPVGNYFKEG--LAPLNLYVEDEFHRATPGG-AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSV 153 (277)
Q Consensus 79 ~~~--~~~~~~i~~~p~~~~~~~g--~~~i~l~~~~~~~r~~~~~-l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~ 153 (277)
.|+ ..+++++.+.|++.++..+ .+++++.++ ++.|..++. ++++|++.||+.+++++++|+++|+||+||+|+
T Consensus 111 ~p~~~~~~~~~i~~~p~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~~K~~~ny~~~~la~~~A~~~G~de~l~ld~- 188 (309)
T 1iye_A 111 NPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVS-SWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIALDV- 188 (309)
T ss_dssp SCCTTCCEEEEEEEECCCCTTCTTHHHHCEEEEEC-SSCCCCTTTSCTTSCBGGGHHHHHHHHHHHHHTTCSEEEEECT-
T ss_pred CCCCCCCcEEEEEEEEcCccCCcccccCCeEEEEe-eeeccCCCCCCccccchhhhHHHHHHHHHHHHcCCCEEEEECC-
Confidence 654 3678888888887654322 135677665 456766654 589998559999999999999999999999997
Q ss_pred CCCeEEeeCceeEEEEECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEE
Q 023788 154 NKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGS 233 (277)
Q Consensus 154 ~~G~v~E~t~sNvf~v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~ 233 (277)
+|+|+|+++||||+++||+|+|||+++++|+||||+.||++|+++|++|+|+.++++||.+|||+|+|||++||+||.+
T Consensus 189 -~G~V~Egs~sNif~v~~g~l~TP~l~~~iL~GitR~~ll~~a~~~g~~v~E~~i~~~eL~~adevfltns~~gv~PV~~ 267 (309)
T 1iye_A 189 -NGYISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRS 267 (309)
T ss_dssp -TSBEEEETTBEEEEEETTEEEECCGGGTCCCCHHHHHHHHHHHHTTCCEEECCCBTTHHHHCSEEEEEETTTEEEEEEE
T ss_pred -CCcEEEcCceEEEEEECCEEECCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHhhCcEEEEccCCCEEEEEEE
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCeEEeeCCCccHHHHHHHHHHHHhHhcCCCCCCCCceecC
Q 023788 234 ITYRGKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 277 (277)
Q Consensus 234 i~~~~~~i~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 277 (277)
|+ ++.++ .+.+||++++|+++|.++++|+.+++++|+++|.
T Consensus 268 id--~~~~~-~g~~g~~~~~l~~~~~~~~~g~~~~~~~w~~~v~ 308 (309)
T 1iye_A 268 VD--GIQVG-EGRCGPVTKRIQQAFFGLFTGETEDKWGWLDQVN 308 (309)
T ss_dssp ET--TEECT-TSSCCHHHHHHHHHHHGGGTTSSCCCSCCEEECC
T ss_pred EC--CEECC-CCCCCHHHHHHHHHHHHHHcCCCCccCCCCeECC
Confidence 85 77763 4468999999999999999999999999999973
No 10
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A*
Probab=100.00 E-value=3.7e-51 Score=358.14 Aligned_cols=238 Identities=18% Similarity=0.213 Sum_probs=203.3
Q ss_pred ceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCcccCCC
Q 023788 2 KAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA 81 (277)
Q Consensus 2 ~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~~~~~ 81 (277)
.++|+++|++ |+|++|++||.+||+.|+|+.|+.+++.+.+.++++.+. .++||+.++++.+..|+.|+
T Consensus 27 Etir~~~G~~--~~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~i~~~~~~~~---------~~~iR~~v~~g~~~~g~~p~ 95 (269)
T 1i2k_A 27 TTARVIDGKV--SLLSAHIQRLQDACQRLMISCDFWPQLEQEMKTLAAEQQ---------NGVLKVVISRGSGGRGYSTL 95 (269)
T ss_dssp EEEEEETTEE--TTHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHC---------SEEEEEEEECCSCCSTTCCT
T ss_pred EEEEEECCEE--ecHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhCC---------CeEEEEEEEcCCCCCCCCCc
Confidence 4678889985 899999999999999999998788999999999987642 45778777644445666654
Q ss_pred --CCcEEEEEEEecCccccC-CCcCeEEEeeecccccCCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCCCeE
Q 023788 82 --PEYTFLVFASPVGNYFKE-GLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNL 158 (277)
Q Consensus 82 --~~~~~~i~~~p~~~~~~~-g~~~i~l~~~~~~~r~~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~G~v 158 (277)
..+++++.+.|+++++.. ..+++++.++ +.+|..++.++++||+ ||+.+++|+++|+++|+||+||+|+ +|+|
T Consensus 96 ~~~~~~~~i~~~p~~~~~~~~~~~g~~l~~~-~~~~~~~~~~~~~Kt~-n~~~~~~a~~~A~~~G~de~l~ld~--~G~v 171 (269)
T 1i2k_A 96 NSGPATRILSVTAYPAHYDRLRNEGITLALS-PVRLGRNPHLAGIKHL-NRLEQVLIRSHLEQTNADEALVLDS--EGWV 171 (269)
T ss_dssp TCCCCEEEEEEECCCSHHHHHHHHCEEEEEC-SCCBCCCTTTTBCCBS-CCHHHHHHHHHHTTSSCSEEEEEBT--TSBE
T ss_pred cCCCcEEEEEEEECCCcchhhhcCCeEEEEe-ceecCCCCcccCcchh-hhHHHHHHHHHHHHCCCCEEEEECC--CCcE
Confidence 478899999998864311 1234667665 3566556678999996 8999999999999999999999998 7999
Q ss_pred EeeCceeEEEEECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEEEeeCC
Q 023788 159 EEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRG 238 (277)
Q Consensus 159 ~E~t~sNvf~v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~i~~~~ 238 (277)
+|+++||||+++||+|+|||+++++|+||||+.|+++|+++|++|+|+.++++||.+|||+|+|||++||+||.+|+ +
T Consensus 172 ~E~s~sNif~v~~g~l~TP~~~~~iL~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gv~pV~~id--~ 249 (269)
T 1i2k_A 172 TECCAANLFWRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQADEMVICNALMPVMPVCACG--D 249 (269)
T ss_dssp EECSSSEEEEEETTEEEEECCSSSSBCCHHHHHHHHHHHHSSSEEEEECCBHHHHHTCSEEEEECSSSCEEEEEEET--T
T ss_pred EEcCceEEEEEECCEEECCCCccCccCCHHHHHHHHHHHHcCCeEEEEECCHHHHhhCCEEEEcCChhheEEEEEEC--C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999985 7
Q ss_pred eEEeeCCCccHHHHHHHHHHHH
Q 023788 239 KRIEFKTGAQSVSRELYSTLVG 260 (277)
Q Consensus 239 ~~i~~~~~~g~~~~~l~~~~~~ 260 (277)
+.+ + .||++++|+++|..
T Consensus 250 ~~~--~--~g~~~~~l~~~~~~ 267 (269)
T 1i2k_A 250 VSF--S--SATLYEYLAPLCER 267 (269)
T ss_dssp EEC--C--CCHHHHHHHHHHHT
T ss_pred EEe--c--CcHHHHHHHHHHhc
Confidence 775 3 38999999999864
No 11
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A*
Probab=100.00 E-value=5.4e-51 Score=357.98 Aligned_cols=241 Identities=22% Similarity=0.328 Sum_probs=199.8
Q ss_pred ceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCcccC-
Q 023788 2 KAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLA- 79 (277)
Q Consensus 2 ~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~~~- 79 (277)
.++|+++|++ |+|++|++||.+||+.|+|+.| +.+++.+.+.+++++|+. .++.+|++ +++|.++ +++.
T Consensus 32 Etir~~~g~~--f~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~li~~n~~-----~~~~lri~-vtrG~~~-r~~~~ 102 (277)
T 3daa_A 32 EVVKVYNGEM--FTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKNEL-----NTGHIYFQ-VTRGTSP-RAHQF 102 (277)
T ss_dssp EEEEEETTEE--TTHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHTC-----CSEEEEEE-EESCBCS-CCSSC
T ss_pred EEEEEECCEE--cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCC-----CcEEEEEE-EEecCCC-cCCCC
Confidence 3678889985 8999999999999999999976 899999999999999874 23444544 2345553 3433
Q ss_pred C--CCCcEEEEEEEecCccccCCCcCeEEEeeecccccCCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCCCe
Q 023788 80 P--APEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKN 157 (277)
Q Consensus 80 ~--~~~~~~~i~~~p~~~~~~~g~~~i~l~~~~~~~r~~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~G~ 157 (277)
| ...+++++++.|++.+.....+++++.+.++ .| +.++++||+ ||+.+++|+++|+++|+||+||+| +|+
T Consensus 103 p~~~~~~~~~i~~~p~~~~~~~~~~gv~~~~~~~-~r---~~~~~~Kt~-nyl~~~la~~eA~~~g~~e~l~l~---~g~ 174 (277)
T 3daa_A 103 PENTVKPVIIGYTKENPRPLENLEKGVKATFVED-IR---WLRCDIKSL-NLLGAVLAKQEAHEKGCYEAILHR---NNT 174 (277)
T ss_dssp CSSCCCCEEEEEEEECCCCHHHHHHCEEEEEEEC-CC---CSCTTSCBS-CCHHHHHHHHHHHHTTCSEEEEEE---TTE
T ss_pred CCCCCCcEEEEEEEECCCChHHHhCCeEEEEecC-cc---ccCCCcchh-hhHHHHHHHHHHHHCCCCEEEEEc---CCE
Confidence 3 3468899999998743211112355555433 22 346899996 999999999999999999999996 599
Q ss_pred EEeeCceeEEEEECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEEEeeC
Q 023788 158 LEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYR 237 (277)
Q Consensus 158 v~E~t~sNvf~v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~i~~~ 237 (277)
|+|++++|||+++||+|+|||+++++|+||||+.++++|+++|++|+|+.++++||.+|||+|+|||++||+||.+|+
T Consensus 175 v~E~~~sNif~~~~~~l~TP~~~~~iL~GitR~~vl~~~~~~g~~v~e~~i~~~el~~adevf~~ns~~~i~pV~~id-- 252 (277)
T 3daa_A 175 VTEGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSEITPVIEID-- 252 (277)
T ss_dssp EEEETTBEEEEEETTEEEECCSSTTSCCCHHHHHHHHHHHHTTCCEECCCCBHHHHHTCSEEEEEETTTEEEEEEEET--
T ss_pred EEEcCceEEEEEECCEEECCCCcCCCCccHHHHHHHHHHHHcCCeEEEEeCCHHHHHhcCeeeeecChhhEEEEEEEC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred CeEEeeCCCccHHHHHHHHHHHHhH
Q 023788 238 GKRIEFKTGAQSVSRELYSTLVGIQ 262 (277)
Q Consensus 238 ~~~i~~~~~~g~~~~~l~~~~~~~~ 262 (277)
++.++ .+.+||+|++|+++|.+.+
T Consensus 253 ~~~~~-~g~~g~~t~~L~~~~~~~i 276 (277)
T 3daa_A 253 GKLIR-DGKVGEWTRKLQKQFETKI 276 (277)
T ss_dssp TEEST-TSSCCHHHHHHHHHHHTTC
T ss_pred CEECC-CCCcCHHHHHHHHHHHHhc
Confidence 77753 4458999999999998754
No 12
>2xpf_A 4-amino-4-deoxychorismate lyase; para-aminobenzoic acid, folate biosynthesis; HET: PLP PG4; 1.75A {Pseudomonas aeruginosa} PDB: 2y4r_A* 2xpf_B*
Probab=100.00 E-value=2.7e-50 Score=356.23 Aligned_cols=238 Identities=20% Similarity=0.255 Sum_probs=202.7
Q ss_pred ceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEE-ecCCCcccCC
Q 023788 2 KAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLV-GSGPILGLAP 80 (277)
Q Consensus 2 ~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~-g~~~~~~~~~ 80 (277)
.++|++||++ |+|++|++||.+||+.|+|+.| .+++.+.+.++++... ..+||+.++ |.+ .+|+.|
T Consensus 49 Etir~~~G~~--~~l~~Hl~RL~~Sa~~l~~~~~-~~~l~~~i~~~v~~~~---------~~~iR~~v~rg~~-~~g~~p 115 (292)
T 2xpf_A 49 ETLAVRAGTP--RLLERHLARLEEGCRRLAIPLD-TAALRQELLAFCAALG---------DGVAKLIVTRGEG-LRGYAP 115 (292)
T ss_dssp EEEEEETTEE--TTHHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHHC---------SEEEEEEEECCBC-CSSSSC
T ss_pred EEEEEECCEE--CCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHhCC---------CcEEEEEEEecCC-CCCCCC
Confidence 4678889985 7899999999999999999986 8889999999988632 357787665 444 567765
Q ss_pred C--CCcEEEEEEEecCccccC-CCcCeEEEeeecccccCCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCCCe
Q 023788 81 A--PEYTFLVFASPVGNYFKE-GLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKN 157 (277)
Q Consensus 81 ~--~~~~~~i~~~p~~~~~~~-g~~~i~l~~~~~~~r~~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~G~ 157 (277)
+ ..|++++.+.|++.++.. ..+++++.+++ .++..++.++++||+ ||+.+++|+++|+++|+||+||+|+ +|+
T Consensus 116 ~~~~~~~~~i~~~p~~~~~~~~~~~gv~l~~~~-~~~~~~~~~~~~Kt~-ny~~~~la~~~A~~~G~de~L~ld~--~G~ 191 (292)
T 2xpf_A 116 PAEASPRRILSGSPRPAYPERHWQQGVRLFACR-TRLAEQPLLAGLKHL-NRLEQVLARAEWSDAGHAEGLMLDV--HER 191 (292)
T ss_dssp CTTCCCEEEEEEECCCCCCHHHHHTCEEEEECC-CCBCCCTTTTBCCBS-CCHHHHHHHTTCCCTTCSEEEEEBT--TCC
T ss_pred CCCCCcEEEEEEEECCccchhhccCCeEEEEee-eeccCCCCCCCcchh-hhHHHHHHHHHHHHcCCCEEEEECC--CCC
Confidence 4 467889999998865411 12356676654 455555568899996 8999999999999999999999998 799
Q ss_pred EEeeCceeEEEEECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEEEeeC
Q 023788 158 LEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYR 237 (277)
Q Consensus 158 v~E~t~sNvf~v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~i~~~ 237 (277)
|+|++++|||+++||+|+|||+++++|+||||+.||++|+++|++|+|+.++++||.+|||+|+|||++||+||++|+
T Consensus 192 V~Egs~sNif~v~~g~l~TPpl~~~iL~GitR~~vl~~a~~~G~~v~E~~i~~~eL~~adevfltns~~gv~PV~~id-- 269 (292)
T 2xpf_A 192 VVEGVFSNLLLVLDGTLVAPDLRRCGVAGVMRAELLERAEGIGVPLAIRDVSMAELATADEVFLCNSQFGIWPVRALD-- 269 (292)
T ss_dssp EEEESSSEEEEEETTEEEEECCSSSSBCCHHHHHHHHHHHHTTCCEEEECBCHHHHHTCSEEEEEETTTEEEEEEEET--
T ss_pred EEEcCCeEEEEEECCEEEeCCCCCccCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHhCCEEEEEcCcccEEEEEEEC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred CeEEeeCCCccHHHHHHHHHHHHhH
Q 023788 238 GKRIEFKTGAQSVSRELYSTLVGIQ 262 (277)
Q Consensus 238 ~~~i~~~~~~g~~~~~l~~~~~~~~ 262 (277)
++.+ + +||++++|+++|.+.+
T Consensus 270 ~~~~--~--~g~~t~~l~~~~~~~~ 290 (292)
T 2xpf_A 270 EHVW--P--VGELTRKLQDQLRDDL 290 (292)
T ss_dssp TEEC--C--CCHHHHHHHHHHHHHH
T ss_pred CEEe--C--CCHHHHHHHHHHHHHh
Confidence 7764 2 7899999999998754
No 13
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila}
Probab=100.00 E-value=4.7e-50 Score=351.28 Aligned_cols=236 Identities=21% Similarity=0.275 Sum_probs=201.2
Q ss_pred ceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCcccCC
Q 023788 2 KAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAP 80 (277)
Q Consensus 2 ~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~~~~ 80 (277)
.++|+++|++ |+|++|++||.+||+.|+|+.| +.+++.+.+.+++++|+. ...+||+.++++.+.+|+.+
T Consensus 31 Etir~~~g~~--~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~l~~~~~~-------~~~~irl~v~rg~~~~g~~~ 101 (272)
T 3lul_A 31 ETIRVNSSKP--SFAYMHWERLGNSARQLGIPFEISFDDWFEHLIQKIQKDNL-------YHGGIKAILSGGPASRGLAE 101 (272)
T ss_dssp EEEEEETTEE--SSHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHTTC-------SSEEEEEEEECCBCCSSTTC
T ss_pred EEEEEECCEe--CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCC-------CCEEEEEEEEecCCccCcCC
Confidence 4678889985 8999999999999999999988 999999999999998863 45677776664433567665
Q ss_pred CC--CcEEEEEEEecCccccCCCcCeEEEeeecccccCCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCCCeE
Q 023788 81 AP--EYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNL 158 (277)
Q Consensus 81 ~~--~~~~~i~~~p~~~~~~~g~~~i~l~~~~~~~r~~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~G~v 158 (277)
+. .|+++++ .|++.. ..++++.++ +++|..+++++++||+ ||+.+++|+++|+++|+||+||+|. +|+|
T Consensus 102 ~~~~~~~~~~~-~p~~~~----~~~v~l~~~-~~~r~~~~~~~~~Kt~-nyl~~~la~~~A~~~G~de~L~ld~--~g~v 172 (272)
T 3lul_A 102 RGQVSQLIFQT-FNYSIQ----KHPVRLISI-NWLRDKANPLYQLKSV-NYLEAIIAQRQAIAVGADDALFFNT--ENHV 172 (272)
T ss_dssp CCSSEEEEEEE-ECCCCC----CSCEEEEEE-EEEECTTCGGGGSCBS-CCHHHHHHHHHHHHTTCSEEEEEET--TSBE
T ss_pred CCCCCcEEEEE-ECCCCc----cccEEEEEE-eEEecCCCcccchhhh-ccHHHHHHHHHHHHcCCCEEEEECC--CCeE
Confidence 42 4566665 555421 124677654 5778777788999996 9999999999999999999999998 7999
Q ss_pred EeeCceeEEEEECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEEEeeCC
Q 023788 159 EEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRG 238 (277)
Q Consensus 159 ~E~t~sNvf~v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~i~~~~ 238 (277)
+|++++|||+++||+|+|||+++++|+||||+.++++|+++|++|+|+.++++||.+|||+|+|||++||+||.+|+ +
T Consensus 173 ~E~~~sNif~~~~g~l~TP~l~~~iL~GitR~~ll~la~~~g~~v~e~~i~~~el~~adevf~~ns~~~v~PV~~id--~ 250 (272)
T 3lul_A 173 TETTCANLFLIENNILYTPRVEDGILPGITRARLISHCQQHKMSVQEISLTKKRIEDADAVFLTNSLQGIRRVLSLD--N 250 (272)
T ss_dssp EEESSCEEEEEETTEEEECCGGGTCCCCHHHHHHHHHHHHTTCCEEECCCBHHHHHTCSEEEEEETTTEEEEEEEET--T
T ss_pred EEcCCeEEEEEECCEEECCCCccCcCcCHHHHHHHHHHHHcCCeEEEEECCHHHHhhCCEEEEEcCchhEEEEEEEC--C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999995 7
Q ss_pred eEEeeCCCccHHHHHHHHHHHHhHhc
Q 023788 239 KRIEFKTGAQSVSRELYSTLVGIQTG 264 (277)
Q Consensus 239 ~~i~~~~~~g~~~~~l~~~~~~~~~~ 264 (277)
+.+ +. |++|+++|.+....
T Consensus 251 ~~~--~~-----t~~l~~~y~~~~~~ 269 (272)
T 3lul_A 251 IIF--EV-----NHPIIDKLIFLLNQ 269 (272)
T ss_dssp EEC--CC-----CCHHHHHHHHHHHH
T ss_pred EEc--ch-----HHHHHHHHHHHHhh
Confidence 775 22 88999999887653
No 14
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Probab=100.00 E-value=1.1e-49 Score=351.17 Aligned_cols=239 Identities=25% Similarity=0.292 Sum_probs=202.4
Q ss_pred ceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCcccCC
Q 023788 2 KAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAP 80 (277)
Q Consensus 2 ~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~~~~ 80 (277)
.++|+++|++ |+|++|++||.+||+.|+|+.| +.+++.+.+.++++.++ +..|||+++... +
T Consensus 44 Etir~~~G~~--~~l~~Hl~RL~~Sa~~l~~~~p~~~~~l~~~i~~~~~~~~--------~~~~iR~~v~~~----~--- 106 (285)
T 3csw_A 44 ETLRTYSRAP--FAAYKHYTRLKRSADFFNLPLSLSFDEFTKVLKAGADEFK--------QEVRIKVYLFPD----S--- 106 (285)
T ss_dssp EEEEEETTEE--TTHHHHHHHHHHHHHTTTCCCSSCHHHHHHHHHHHHTTCS--------SCEEEEEEECTT----T---
T ss_pred EEEEEECCEE--CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhC--------CCeEEEEEEEcC----C---
Confidence 4778899985 8899999999999999999876 89999999999987653 346888776211 1
Q ss_pred CCCcEEEEEEEecCccccCCCcCeEEEeeecccccCCC-CCCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCCCeEE
Q 023788 81 APEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPG-GAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLE 159 (277)
Q Consensus 81 ~~~~~~~i~~~p~~~~~~~g~~~i~l~~~~~~~r~~~~-~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~G~v~ 159 (277)
.++++.+.|+++++ ..+++++.++ ++++.... .++++||+ ||+.+++|+++|++ +||+||+|+ +|+|+
T Consensus 107 ---~~~~i~~~p~~~~~--~~~~~~l~~~-~~~~~~~~~~~~~~Kt~-~~l~~~la~~~A~~--~de~L~ld~--~G~V~ 175 (285)
T 3csw_A 107 ---GEVLFVFSPLNIPD--LETGVEVKIS-NVRRIPDLSTPPALKIT-GRTDIVLARREIVD--CYDVILLGL--NGQVC 175 (285)
T ss_dssp ---CCEEEEEEECCCCC--CTTCEEEEEC-SSCCCCTTTSCTTCCBT-TCHHHHHHHTTCSS--SSEEEEECT--TSBEE
T ss_pred ---CEEEEEEEeCCCcc--ccCCeEEEEE-eEEecCCCCCCCccchh-ccHHHHHHHHHHHh--CCeEEEECC--CCcEE
Confidence 14778888887654 1245667664 34443332 35799997 69999999988876 999999998 79999
Q ss_pred eeCceeEEEEECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEEEeeCCe
Q 023788 160 EVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGK 239 (277)
Q Consensus 160 E~t~sNvf~v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~i~~~~~ 239 (277)
|+++||||+++||+|+|||+++++|+||||+.+|++|+++|++|+|+.++++||.+|||+|+|||++||+||.+|+ ++
T Consensus 176 Egs~sNif~v~~g~l~TP~l~~~iL~GitR~~ll~~a~~~g~~v~E~~i~~~dL~~adevfltns~~gv~PV~~id--~~ 253 (285)
T 3csw_A 176 EGSFSNVFLVKEGKLITPSLDSGILDGITRENVIKLAKSLEIPVEERVVWVWELFEADEMFLTHTSAGVVPVRRLN--EH 253 (285)
T ss_dssp EESSSEEEEEETTEEEEECGGGTCCCCHHHHHHHHHHHHTTCCEEEECCBHHHHHTCSEEEEEETTTEEEEEEEET--TE
T ss_pred EcCceEEEEEECCEEEeCCCCCCccCCHHHHHHHHHHHHCCCeEEEEeCCHHHHhhCCEEEEecCcceEEEEEEEC--CE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999985 77
Q ss_pred EEeeCCCccHHHHHHHHHHHHhHhcCCCCCCCCce
Q 023788 240 RIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGWTV 274 (277)
Q Consensus 240 ~i~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~ 274 (277)
.++ .+.+||++++|+++|.++++|+. ++|+.
T Consensus 254 ~~~-~g~~g~~t~~L~~~~~~~~~~~~---~~w~~ 284 (285)
T 3csw_A 254 SFF-EEEPGPVTATLMENFEPFVLNLE---ENWVG 284 (285)
T ss_dssp ESC-SSSCCHHHHHHHHHHHHHHHTCG---GGTTT
T ss_pred ECC-CCCCCHHHHHHHHHHHHHHhCcC---CCCCC
Confidence 763 44589999999999999999987 68975
No 15
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum}
Probab=100.00 E-value=6e-49 Score=350.11 Aligned_cols=240 Identities=20% Similarity=0.320 Sum_probs=166.6
Q ss_pred ceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCcccCCC
Q 023788 2 KAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA 81 (277)
Q Consensus 2 ~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~~~~~ 81 (277)
.++|+++|++ |+|++|++||.+||+.|+|+.|+.+++.+.+.++++.+.. ..+.+++|||++++++.+..+
T Consensus 51 Etirv~~G~~--~~l~~Hl~RL~~Sa~~L~i~~p~~~~l~~~i~~~v~~~~~---~n~~~~~~iRl~vtrG~~~~g---- 121 (315)
T 3sno_A 51 ETLLIRDGHA--CNVRRHGERFKASAALLGLPEPILEDWEKATQMGIESWYS---HPNAGEASCTWTLSRGRSSTG---- 121 (315)
T ss_dssp EEEEEETTEE--TTHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHT---C--CCCEEEEEEEECCBTTTC----
T ss_pred EEEEEECCEE--CCHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhhcc---cCCCCCEEEEEEEEeCCCCCC----
Confidence 4678889985 8899999999999999999988889999999999987320 001246789987764332332
Q ss_pred CCcEEEEEEEecCccccC-CCcCeEEEeeecc----------------------cccCCCCCCCCccccCcHHHHHHHHH
Q 023788 82 PEYTFLVFASPVGNYFKE-GLAPLNLYVEDEF----------------------HRATPGGAGGVKAISNYAPVLKAISR 138 (277)
Q Consensus 82 ~~~~~~i~~~p~~~~~~~-g~~~i~l~~~~~~----------------------~r~~~~~l~~~Kt~~~y~~~~~a~~e 138 (277)
.|++++++.|++.++.. ..+++++.+++.. .+..|+.++++||+ ||+.+++|+++
T Consensus 122 -~p~~~v~~~p~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~~~r~~~s~~~~~~~p~~l~~~Kt~-nyl~~vla~~~ 199 (315)
T 3sno_A 122 -LASGWLTITPVSSDKLAQREHGVSVMTSSRGYSIDTGLPGIGKATRGELSKVERTPAPWLTVGAKTL-AYAANMAALRY 199 (315)
T ss_dssp -CCEEEEEEEECCHHHHHHHHHCEEEEEEEC-------------------------------------------------
T ss_pred -CCEEEEEEEECCCcchhhhcCCEEEEEeccccccccccccccccccccccccccccCcccccCcchh-ccHHHHHHHHH
Confidence 36788888888754310 0123445443310 01234457899997 99999999999
Q ss_pred HHhcCCCeEEEEccCCCCeEEeeCceeEEEEECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccE
Q 023788 139 AKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADE 218 (277)
Q Consensus 139 a~~~g~de~llld~~~~G~v~E~t~sNvf~v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade 218 (277)
|+++|+||+||+|. +| |+|++++|||+++||+|+|||++.++|+||||+.++++|+++|++|+|+.++++||.+|||
T Consensus 200 A~~~G~de~l~l~~--~G-v~E~s~sN~f~~~~g~l~TPp~~~~iL~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade 276 (315)
T 3sno_A 200 AKSNGFDDVIFTDG--DR-VLEGATSTVVSFKGDKIRTPSPGGDILPGTTQAALFAHATEKGWRCKEKDLSIDDLFGADS 276 (315)
T ss_dssp -----CEEEEEEET--TE-EEEESSSEEEEEETTEEEEECCC------HHHHHHHHHHHHTTCEEEEECCBHHHHHHSSE
T ss_pred HHHcCCCEEEEEeC--CC-cEEcCCeeEEEEECCEEEcCCCCCCcChhHHHHHHHHHHHHcCCEEEEEECCHHHHHhCCe
Confidence 99999999999998 79 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCceEEEEEEeeCCeEEeeCCCccHHHHHHHHHHHHh
Q 023788 219 VFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGI 261 (277)
Q Consensus 219 vfltns~~gi~pV~~i~~~~~~i~~~~~~g~~~~~l~~~~~~~ 261 (277)
+|+|||++||+||++|+ ++.+ ..+++++.|++.|.+.
T Consensus 277 vfl~ns~~gv~pV~~id--~~~~----~~~~~~~~l~~~~~~~ 313 (315)
T 3sno_A 277 VWLVSSVRGPVRVTRLD--GHKL----RKPDNEKEIKALITKA 313 (315)
T ss_dssp EEEEETTTEEEEEEEES--SSCC----CCCTTHHHHHHHHHHH
T ss_pred eEEEcCcccEEEEEEEC--CEEC----CCChHHHHHHHHHHHh
Confidence 99999999999999996 7764 3689999999999874
No 16
>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti}
Probab=100.00 E-value=4.7e-44 Score=304.04 Aligned_cols=199 Identities=17% Similarity=0.175 Sum_probs=171.6
Q ss_pred ceEecC-CCcEeeeChhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCcccCC
Q 023788 2 KAYRKE-DGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAP 80 (277)
Q Consensus 2 ~~~rv~-~G~~~~f~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~~~~ 80 (277)
.++|++ +|++ |+|++|++||.+||+.|+|+. +.+++.+.+.++++ ++ .+.+|||+++..++
T Consensus 20 Etir~~~~G~~--~~l~~Hl~RL~~Sa~~l~~~~-~~~~l~~~i~~~~~-~~-------~~~~~iR~~~~~~g------- 81 (221)
T 3qqm_A 20 ETMRWQPGTSF--LRFDRHLARLYGSAAELGFAC-DPQRIAEVLSDALD-GA-------RTAMRTRLALARNG------- 81 (221)
T ss_dssp EEEEEETTTEE--TTHHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHT-TC-------CSCEEEEEEEETTS-------
T ss_pred EEEEEecCCcC--cCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHh-cC-------CCCEEEEEEEEcCC-------
Confidence 467888 9985 889999999999999999986 68889999999886 43 35789998776543
Q ss_pred CCCcEEEEEEEecCccccCCCcCeEEEeeecccccCCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCCCeEEe
Q 023788 81 APEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEE 160 (277)
Q Consensus 81 ~~~~~~~i~~~p~~~~~~~g~~~i~l~~~~~~~r~~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~G~v~E 160 (277)
.+.+.+.|+++++. .+++++.+++ +++..++.++++||+ ||+.+.+|+++|+++|+||+||+|+ +|+|+|
T Consensus 82 ----~~~i~~~p~~~~~~--~~~~~l~~~~-~~~~~~~~~~~~Kt~-nr~~~~~a~~~a~~~g~~e~l~l~~--~g~v~E 151 (221)
T 3qqm_A 82 ----DATASAQPYEPLAA--DKVWILRLAR-TRLDSQNTLLRHKTS-RRQLYTHARSEYLVTQADEVLLANE--RGEICE 151 (221)
T ss_dssp ----CEEEEEEECCCCCT--TCCEEEEECS-CCBCTTCGGGGSCBS-CCHHHHHHHHTSCTTTCSEEEEEBT--TSCEEE
T ss_pred ----CEEEEEEcCCCCCC--CCCEEEEEee-eEecCCCcchhchhc-chHHHHHHHHHHHhcCCcEEEEECC--CCeEEE
Confidence 25677888876542 1356777654 566666778999996 9999999999999999999999998 799999
Q ss_pred eCceeEEEEEC-CEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEE
Q 023788 161 VSSCNIFILKG-NIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGS 233 (277)
Q Consensus 161 ~t~sNvf~v~~-g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~ 233 (277)
++++|||++++ |+|+|||++.++|+||||+.+++++ +|+|+.++++||.+|||+|+|||++||+||+-
T Consensus 152 ~s~sNif~~~~~~~l~TP~~~~~~L~GitR~~ll~~~-----~v~e~~i~~~~L~~adevf~~ns~~gi~pV~l 220 (221)
T 3qqm_A 152 GTITNVFADFGDGVLATPRLDCGLLPGVLRAELLDEG-----RAEEAIYSYDDLKSAKALFVGNSLRGLIPAKL 220 (221)
T ss_dssp ESSCEEEEECSSSCEEEECGGGTCCCCHHHHHHHHTT-----SEEEECCCHHHHTTCSEEEEEETTTEEEEEEE
T ss_pred cCceeEEEEeCCCEEECCCCccCcchHHHHHHHHhhC-----cEEEEeCCHHHHHhCCEEEEEecceeEEEEEE
Confidence 99999999998 9999999999999999999999963 89999999999999999999999999999974
No 17
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus}
Probab=100.00 E-value=1.1e-43 Score=306.83 Aligned_cols=199 Identities=22% Similarity=0.308 Sum_probs=167.1
Q ss_pred ceEecCCCcEeeeChhhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHc-CCCCCCCCCccEEEEEEEEecCCCcccCC
Q 023788 2 KAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALAN-KRWVPPPGKGSLYIRPLLVGSGPILGLAP 80 (277)
Q Consensus 2 ~~~rv~~G~~~~f~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~l~~~~-~~~~~~~~~~~~~ir~~~~g~~~~~~~~~ 80 (277)
.++|+++|++ |+|++|++||.+||+.|+++.|..+++.+.+.++++.+ + .+.++||++++++++..++
T Consensus 26 Etir~~~G~~--~~l~~Hl~RL~~Sa~~l~~~~p~~~~l~~~i~~~~~~~~~-------~~~~~vR~~v~~g~~~~~~-- 94 (246)
T 2zgi_A 26 TTLRAEGGRP--LWLEEHLARLRRHALALGLSYPGDEAFLEDLEALLRAFPK-------APCLRLRFTVGEGVRLSEA-- 94 (246)
T ss_dssp EEEEEETTEE--TTHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHTTSCTT-------CSEEEEEEEEETTEEEEEE--
T ss_pred EEEEEECCEe--CCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcCC-------CCCEEEEEEEECCCCccCc--
Confidence 4678889975 89999999999999999999762388999999988766 3 2578999887644322332
Q ss_pred CCCcEEEEEEEecCc----cccCCCcCeEEEeeecccccCCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCCC
Q 023788 81 APEYTFLVFASPVGN----YFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKK 156 (277)
Q Consensus 81 ~~~~~~~i~~~p~~~----~~~~g~~~i~l~~~~~~~r~~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~G 156 (277)
.|.+. ++.+| +++.+++ + |..|+ +.++||+ ||+.+++|+++|+++|+||+||+|+ +|
T Consensus 95 ----------~p~~~~~~~~~~~g---~~l~~~~-~-r~~~~-~~~~Kt~-n~~~~~~a~~~A~~~g~de~l~ld~--~G 155 (246)
T 2zgi_A 95 ----------RPYAPLPLSLYREG---VRVRLTG-Y-RVHPD-LARYKTG-NYLPYRLALEEARKEGAFEGLLLDA--FG 155 (246)
T ss_dssp ----------EECCCCCTHHHHHC---BCEEEEE-E-ECCTT-TTTSCBS-CCHHHHHHHHHHHTTTCSEEEEECT--TS
T ss_pred ----------CcCCCCchhHhhcC---eEEEEec-c-cCCCC-Cccchhh-hhHHHHHHHHHHHHcCCCEEEEECC--CC
Confidence 23321 12233 4565554 3 66666 7899997 8999999999999999999999998 79
Q ss_pred eEEeeCceeEEEEECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEEEe
Q 023788 157 NLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSIT 235 (277)
Q Consensus 157 ~v~E~t~sNvf~v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~i~ 235 (277)
+|+|+++||||+++||+|+|| +++|+||||+.++++|+++|++|+|+.++++||.+ |+|+|||++||+||.+|+
T Consensus 156 ~v~Egs~sNif~v~~g~l~TP---~~iL~GitR~~ll~~a~~~g~~v~E~~i~~~dL~~--evfltns~~gi~pV~~id 229 (246)
T 2zgi_A 156 HVVDGSRTSPLLFREGTLYLL---EGGLEGITREKVAEAARGLGLRVERGLFRPEGLRG--HLLLAGSGVGLLPVRPPP 229 (246)
T ss_dssp CEEEESSSEEEEEETTEEEEE---CSSCCCHHHHHHHHHHHHTTCEEEEECCCGGGCCS--EEEEEETTTEEEEBSSCC
T ss_pred CEEEcCCeEEEEEECCEEECC---CCccCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHh--hHeeecChhheEEEEEEC
Confidence 999999999999999999999 78999999999999999999999999999999999 999999999999999875
No 18
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for structural genomics, protein structure initiative, PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus}
Probab=100.00 E-value=3.4e-39 Score=269.12 Aligned_cols=182 Identities=13% Similarity=0.144 Sum_probs=147.0
Q ss_pred ceEecCCCcEeeeChhhHHHHHHHHH-hhCCCC--CC-CHHHHHHHHHHHHHHcCCCCCCCCCccEEEEEEEEecCCCcc
Q 023788 2 KAYRKEDGQLVLFRPDQNAIRLQTGA-ERMCMP--SP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILG 77 (277)
Q Consensus 2 ~~~rv~~G~~~~f~l~~Hl~RL~~sa-~~l~i~--~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ir~~~~g~~~~~~ 77 (277)
.++|+++|++ |+|++|++||.+|| +.|+|+ .| +.+++.+.+. ++++++ .+.+|||+++..+.
T Consensus 9 Et~r~~~g~~--~~l~~Hl~RL~~Sa~~~l~~~~~~~~~~~~~~~~i~-~~~~~~-------~~~~~iR~~~~~g~---- 74 (194)
T 3ceb_A 9 ETILIEQGQA--KNISYHQQRYEKSLLKFYPKMKLQPFDLAKIIAKHT-ALFTHR-------EGLIRCRIDYNHHD---- 74 (194)
T ss_dssp EEEEEETTEE--CSHHHHHHHHHHHHHHHSTTCCCCCCCHHHHHHTCG-GGGSCS-------SSEEEEEEEECSSC----
T ss_pred EEEEEECCEe--cCHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH-HHhhCC-------CCCEEEEEEEeCCc----
Confidence 4678889985 88999999999999 999999 55 8888888887 776654 36789997765321
Q ss_pred cCCCCCcEEEEEEEecCccccCCCcCeEEEeeecccccCCCCCCCCccccCcHHHHHHHHHHHhcCCCeEEEEccCCCCe
Q 023788 78 LAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKN 157 (277)
Q Consensus 78 ~~~~~~~~~~i~~~p~~~~~~~g~~~i~l~~~~~~~r~~~~~l~~~Kt~~~y~~~~~a~~ea~~~g~de~llld~~~~G~ 157 (277)
..+...|+++ .++.... +...++.++++||+ ||+ ++++.+|+++|+||+||+ + +|+
T Consensus 75 --------~~~~~~p~~~---~~~~~~~-------~~~~~~~~~~~Kt~-n~~--~~~~~~A~~~g~de~l~l-~--~G~ 130 (194)
T 3ceb_A 75 --------YVLQCFPYQQ---KVYRTFK-------PVFCDHIDYSLKFS-DRT--LLNNLLKQKEECDEIMII-R--QGK 130 (194)
T ss_dssp --------EEEEEEEECC---CCCCCEE-------EEECSSCCCSSCBS-CCH--HHHHHHGGGTTSSEEEEE-E--TTE
T ss_pred --------cEEEEecCCC---CcEEEEE-------EecCCCcchhhccc-CHH--HHHHHHHhhCCCCEEEEE-e--CCE
Confidence 1223344432 1221111 11234567899996 787 568889999999999999 6 799
Q ss_pred EEeeCceeEEEEECCEEEccCCCCCcccchHHHHHHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCce
Q 023788 158 LEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVV 228 (277)
Q Consensus 158 v~E~t~sNvf~v~~g~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi 228 (277)
|+|++++|||+++||+|+||| +++|+||||+.+++ +++|+|+.++++||.+|||+|+|||++|+
T Consensus 131 v~E~s~sNif~~~~g~l~TP~--~~~L~GitR~~ll~-----~~~v~e~~i~~~eL~~adevfl~ns~~gi 194 (194)
T 3ceb_A 131 VTDCSIGNLIFRQNNQWITPD--KPLLEGTQRAKLLE-----QKKIIAREIFFEDLAQYEEIRLINAMNGL 194 (194)
T ss_dssp ECCCSSSEEEEEETTEEEEES--SCSSCCHHHHHHHH-----TTSSEEECCBGGGGGGCSCEEEEBTTBCC
T ss_pred EEEeccEEEEEEECCEEECCC--CCCcChHHHHHHHc-----CCCEEEecCCHHHHhhccEEEEEecccCC
Confidence 999999999999999999999 79999999999998 58999999999999999999999999986
No 19
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=46.08 E-value=24 Score=25.52 Aligned_cols=45 Identities=13% Similarity=0.241 Sum_probs=34.3
Q ss_pred CCcccchHHHHHHH-HHHhCCCcEEE---------EecChhhHhcccEEEEecCC
Q 023788 181 GTILAGITRKSIIE-IASDCGFQVEE---------RAIPVDELLEADEVFCTGTA 225 (277)
Q Consensus 181 ~~~L~GitR~~ll~-~a~~~g~~v~e---------~~i~~~eL~~adevfltns~ 225 (277)
.|+-...|-...|+ .|+++|++++. ..++.+|+.+||-+.+.+..
T Consensus 16 tGiAHTyMAAeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~ 70 (111)
T 2kyr_A 16 MGLAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQDIAEATIIIHSVAV 70 (111)
T ss_dssp SCHHHHHHHHHHHHHHHHHTSSEEEEEEEETTEEESCCCHHHHHHCSEEEEEESS
T ss_pred CcHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcCCCCCHHHHHhCCEEEEEeCC
Confidence 46666666666665 57789988764 36999999999999998874
No 20
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=40.42 E-value=16 Score=25.32 Aligned_cols=48 Identities=13% Similarity=0.098 Sum_probs=27.0
Q ss_pred HHHHHHhCCCcEEEEecChhhHhcccEEEEecCCCceEEEEEEeeCCeEE
Q 023788 192 IIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRI 241 (277)
Q Consensus 192 ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gi~pV~~i~~~~~~i 241 (277)
+-+++++.|++.+|.++.-+.- ..+++.-.+...--+|+.-|. ||..+
T Consensus 20 aK~~L~~~gi~y~~idi~~d~~-~~~~~~~~~~G~~tVP~I~i~-Dg~~l 67 (92)
T 2lqo_A 20 LKTALTANRIAYDEVDIEHNRA-AAEFVGSVNGGNRTVPTVKFA-DGSTL 67 (92)
T ss_dssp HHHHHHHTTCCCEEEETTTCHH-HHHHHHHHSSSSSCSCEEEET-TSCEE
T ss_pred HHHHHHhcCCceEEEEcCCCHH-HHHHHHHHcCCCCEeCEEEEe-CCEEE
Confidence 3445667899999999864321 122222222223456887774 56654
No 21
>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens}
Probab=34.13 E-value=62 Score=20.41 Aligned_cols=43 Identities=16% Similarity=0.304 Sum_probs=27.1
Q ss_pred cCCCeEEEEccCCCCeEEee--------CceeEEEEECCEEEccCCCCCcccchH
Q 023788 142 RGFSDVLYLDSVNKKNLEEV--------SSCNIFILKGNIISTPATSGTILAGIT 188 (277)
Q Consensus 142 ~g~de~llld~~~~G~v~E~--------t~sNvf~v~~g~l~TP~l~~~~L~Git 188 (277)
.|.+|+-|+-+ ||.|... ..+|-|.+.|.-=-- ++ ..+||||-
T Consensus 5 ~gIeEVnmfk~--dg~vihF~nPkVqaS~~aNTfvv~G~~e~K-~l-~e~lP~Il 55 (58)
T 3mcb_B 5 SGIEEVNMFTN--QGTVIHFNNPKVQASLAANTFTITGHAETK-QL-TEMLPSIL 55 (58)
T ss_dssp CCCCEEEEEET--TSEEEEEESCEEEEETTTTEEEEESCEEEE-EG-GGGTTGGG
T ss_pred CCeeEEEEEec--CCEEEEecCcceEEeeccceEEEecCCeee-EH-HHHChhhh
Confidence 46778777765 6777665 458999887652222 22 35677763
No 22
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=33.28 E-value=41 Score=24.04 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=34.7
Q ss_pred CCcccchHHHHHHH-HHHhCCCcEEE---------EecChhhHhcccEEEEecCC
Q 023788 181 GTILAGITRKSIIE-IASDCGFQVEE---------RAIPVDELLEADEVFCTGTA 225 (277)
Q Consensus 181 ~~~L~GitR~~ll~-~a~~~g~~v~e---------~~i~~~eL~~adevfltns~ 225 (277)
.|+-...|-...|+ .|+++|+.++. -.++.+|+.+||-|.+.+..
T Consensus 13 tGiAhTymAaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~ 67 (106)
T 2r48_A 13 NGIAHTYMAAENLQKAADRLGVSIKVETQGGIGVENKLTEEEIREADAIIIAADR 67 (106)
T ss_dssp SCSHHHHHHHHHHHHHHHHHTCEEEEEEEETTEEESCCCHHHHHHCSEEEEEESS
T ss_pred CcHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHHHHhCCEEEEEeCC
Confidence 56777777666675 56778987654 35999999999999998874
No 23
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=32.97 E-value=84 Score=22.32 Aligned_cols=42 Identities=26% Similarity=0.317 Sum_probs=30.7
Q ss_pred cchHHHHHHHHHH---hCCCcEEEEecC---hhhHhcccEEEEecCCC
Q 023788 185 AGITRKSIIEIAS---DCGFQVEERAIP---VDELLEADEVFCTGTAV 226 (277)
Q Consensus 185 ~GitR~~ll~~a~---~~g~~v~e~~i~---~~eL~~adevfltns~~ 226 (277)
-|.|++..-.+++ +.|.+++.-++. ++++.++|.+++.+++.
T Consensus 10 tGnT~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~~~d~vi~g~p~y 57 (137)
T 2fz5_A 10 TGNTEAMANEIEAAVKAAGADVESVRFEDTNVDDVASKDVILLGCPAM 57 (137)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCEEEEETTSCCHHHHHTCSEEEEECCCB
T ss_pred CChHHHHHHHHHHHHHhCCCeEEEEEcccCCHHHHhcCCEEEEEcccc
Confidence 4888877665554 347777666654 67889999999988875
No 24
>2h8b_A Insulin-like 3; insulin/relaxin suparfamily fold, hormone/growth factor complex; NMR {Synthetic} PDB: 2k6t_A 2k6u_A
Probab=31.63 E-value=4.6 Score=20.82 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=13.7
Q ss_pred CCCcccchHHHHHHHHH
Q 023788 180 SGTILAGITRKSIIEIA 196 (277)
Q Consensus 180 ~~~~L~GitR~~ll~~a 196 (277)
...+|.|.|||-+|.+|
T Consensus 8 ~~CClsGCt~QDLL~lC 24 (26)
T 2h8b_A 8 RYCCLSGCTQQDLLTLC 24 (26)
T ss_dssp HHHHHTCBCHHHHHTTC
T ss_pred HHHHhcCCcHHHHHhhC
Confidence 45689999999998754
No 25
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=31.27 E-value=51 Score=24.76 Aligned_cols=45 Identities=11% Similarity=0.070 Sum_probs=34.7
Q ss_pred cchHHHHHHHHHHhCCCcEEEEec---ChhhHhcccEEEEecCCC--ceEE
Q 023788 185 AGITRKSIIEIASDCGFQVEERAI---PVDELLEADEVFCTGTAV--VVAP 230 (277)
Q Consensus 185 ~GitR~~ll~~a~~~g~~v~e~~i---~~~eL~~adevfltns~~--gi~p 230 (277)
-|.|++..-.+++.+|. ++..++ ..++|.++|-+++..++. |..|
T Consensus 12 tGnT~~~A~~ia~~lg~-~~~~~~~~~~~~~l~~~d~ii~g~pt~~~g~~p 61 (164)
T 2bmv_A 12 SGNAEAIAEKISKAIGN-AEVVDVAKASKEQFNSFTKVILVAPTAGAGDLQ 61 (164)
T ss_dssp SSHHHHHHHHHHHHHCS-EEEEEGGGCCHHHHTTCSEEEEEEEEETTTEEC
T ss_pred CchHHHHHHHHHHHcCC-cEEEecccCCHhHHhhCCEEEEEECCcCCCcCc
Confidence 49999999888888886 655555 467888899998887775 5666
No 26
>3lkx_A Transcription factor BTF3; beta-barrel, chaperone; 2.50A {Homo sapiens}
Probab=30.82 E-value=58 Score=21.14 Aligned_cols=43 Identities=16% Similarity=0.304 Sum_probs=26.4
Q ss_pred cCCCeEEEEccCCCCeEEee--------CceeEEEEECCEEEccCCCCCcccchH
Q 023788 142 RGFSDVLYLDSVNKKNLEEV--------SSCNIFILKGNIISTPATSGTILAGIT 188 (277)
Q Consensus 142 ~g~de~llld~~~~G~v~E~--------t~sNvf~v~~g~l~TP~l~~~~L~Git 188 (277)
.|.+|+-|+-+ ||.|... ..+|-|.+.+.-=-- ++ ...||||-
T Consensus 5 ~gIeEVnmfk~--dg~vihF~nPkVqaS~~aNT~vv~G~~e~K-~l-~ellP~Il 55 (66)
T 3lkx_A 5 SGIEEVNMFTN--QGTVIHFNNPKVQASLAANTFTITGHAETK-QL-TEMLPSIL 55 (66)
T ss_dssp CCEEEEEEEET--TSEEEEEESCEEEEECC-CEEEEESCEEEE-EG-GGGTTGGG
T ss_pred CCeeEEEEEec--CCEEEEecCcceEEeeccCeeEecCCCEEe-EH-HHHChhhh
Confidence 35667767665 6776665 568999997753222 22 35777774
No 27
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=29.47 E-value=37 Score=24.30 Aligned_cols=45 Identities=7% Similarity=0.031 Sum_probs=32.2
Q ss_pred CCcccchHHH-HHHHHHHhCCCcEEE---------EecChhhHhcccEEEEecCC
Q 023788 181 GTILAGITRK-SIIEIASDCGFQVEE---------RAIPVDELLEADEVFCTGTA 225 (277)
Q Consensus 181 ~~~L~GitR~-~ll~~a~~~g~~v~e---------~~i~~~eL~~adevfltns~ 225 (277)
.|+=...|-. .+-+.|+++|++++- -.++.+|+.+||-+.+....
T Consensus 13 tGiAhTymAAeaLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I~~AD~VIia~d~ 67 (106)
T 2m1z_A 13 TGVAHTYMAAQALKKGAKKMGNLIKVETQGATGIENELTEKDVNIGEVVIFAVDT 67 (106)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCEEEEEEEETTEESSCCCHHHHHHCSEEEEEESS
T ss_pred CcHHHHHHHHHHHHHHHHHCCCEEEEEEecCccccCCCCHHHHhhCCEEEEeccc
Confidence 4566666644 444567788987753 35778999999999998764
No 28
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=27.90 E-value=88 Score=22.28 Aligned_cols=45 Identities=11% Similarity=0.232 Sum_probs=33.8
Q ss_pred CCcccchHHHHHHH-HHHhCCCcEEE---------EecChhhHhcccEEEEecCC
Q 023788 181 GTILAGITRKSIIE-IASDCGFQVEE---------RAIPVDELLEADEVFCTGTA 225 (277)
Q Consensus 181 ~~~L~GitR~~ll~-~a~~~g~~v~e---------~~i~~~eL~~adevfltns~ 225 (277)
.|+-...|-...|+ .|+++|+.++. -.++.+|+.+||-|.+.+..
T Consensus 13 tGiAhTymAaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~ 67 (106)
T 2r4q_A 13 TGIAHTFMAADALKEKAKELGVEIKVETNGSSGIKHKLTAQEIEDAPAIIVAADK 67 (106)
T ss_dssp CC--CHHHHHHHHHHHHHHHTCCEEEEEEETTEEESCCCHHHHHHCSCEEEEESS
T ss_pred CcHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHHHHhCCEEEEEeCC
Confidence 57777778777776 56778887654 35999999999999998874
No 29
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=22.79 E-value=74 Score=21.57 Aligned_cols=30 Identities=20% Similarity=0.067 Sum_probs=23.7
Q ss_pred cchHHHHHHHHHHhCCCcEEEEecChhhHh
Q 023788 185 AGITRKSIIEIASDCGFQVEERAIPVDELL 214 (277)
Q Consensus 185 ~GitR~~ll~~a~~~g~~v~e~~i~~~eL~ 214 (277)
.|-+-..|++.|++.|+++.|.+--...|.
T Consensus 25 ~~~~A~~I~~~A~e~~VPi~e~~~LAr~L~ 54 (83)
T 3bzy_B 25 KDAKALQIIKLAELYDIPVIEDIPLARSLD 54 (83)
T ss_dssp ETHHHHHHHHHHHHTTCCEEECHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCEEeCHHHHHHHH
Confidence 467788999999999999998765444554
No 30
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=22.43 E-value=1.1e+02 Score=21.89 Aligned_cols=43 Identities=30% Similarity=0.358 Sum_probs=30.6
Q ss_pred cchHHHHHHHHHH---hCCCcEEEEec---ChhhHhcccEEEEecCCCc
Q 023788 185 AGITRKSIIEIAS---DCGFQVEERAI---PVDELLEADEVFCTGTAVV 227 (277)
Q Consensus 185 ~GitR~~ll~~a~---~~g~~v~e~~i---~~~eL~~adevfltns~~g 227 (277)
-|.|++..-.+++ +.|++++..++ .+++|.++|-+++.+++.+
T Consensus 9 tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~iiig~pty~ 57 (138)
T 5nul_A 9 TGNTEKMAELIAKGIIESGKDVNTINVSDVNIDELLNEDILILGCSAMT 57 (138)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCCEEEEGGGCCHHHHTTCSEEEEEECCBT
T ss_pred CchHHHHHHHHHHHHHHCCCeEEEEEhhhCCHHHHhhCCEEEEEcCccC
Confidence 4778776665544 45777766555 4578899999999888764
Done!