RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 023788
(277 letters)
>gnl|CDD|215418 PLN02782, PLN02782, Branched-chain amino acid aminotransferase.
Length = 403
Score = 484 bits (1248), Expect = e-173
Identities = 201/278 (72%), Positives = 243/278 (87%), Gaps = 1/278 (0%)
Query: 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGK 60
+KAYRKEDG ++LFRP++NAIR++ GAERMCMP+P+++QF++AVK+T LANKRWVPPPGK
Sbjct: 126 LKAYRKEDGNILLFRPEENAIRMRNGAERMCMPAPTVEQFVEAVKETVLANKRWVPPPGK 185
Query: 61 GSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGA 120
GSLYIRPLL+GSG +LGLAPAPEYTFL++ SPVGNYFKEG+AP+NL VE+EFHRATPGG
Sbjct: 186 GSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEGVAPINLIVENEFHRATPGGT 245
Query: 121 GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATS 180
GGVK I NYA VLKA S AK +G+SDVLYLD V+KK LEEVSSCNIFI+K N+ISTPA
Sbjct: 246 GGVKTIGNYAAVLKAQSIAKAKGYSDVLYLDCVHKKYLEEVSSCNIFIVKDNVISTPAIK 305
Query: 181 GTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKR 240
GTIL GITRKSII++A GFQVEER + VDELLEADEVFCTGTAVVV+PVGSITY+GKR
Sbjct: 306 GTILPGITRKSIIDVARSQGFQVEERNVTVDELLEADEVFCTGTAVVVSPVGSITYKGKR 365
Query: 241 IEF-KTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 277
+ + + G +VS++LY+ L +Q GLI+DN WTVE++
Sbjct: 366 VSYGEGGFGTVSQQLYTVLTSLQMGLIEDNMNWTVELS 403
>gnl|CDD|177901 PLN02259, PLN02259, branched-chain-amino-acid aminotransferase 2.
Length = 388
Score = 443 bits (1141), Expect = e-157
Identities = 212/276 (76%), Positives = 252/276 (91%)
Query: 2 KAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKG 61
KAYRKE+G+L+LFRPD NAIR++ GAERM MPSPS+DQF++AVKQTALANKRWVPP GKG
Sbjct: 113 KAYRKENGKLLLFRPDHNAIRMKLGAERMLMPSPSVDQFVNAVKQTALANKRWVPPAGKG 172
Query: 62 SLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAG 121
+LYIRPLL+GSGPILGL PAPEYTF+V+ASPVGNYFKEG+A LNLYVE+E+ RA PGGAG
Sbjct: 173 TLYIRPLLMGSGPILGLGPAPEYTFIVYASPVGNYFKEGMAALNLYVEEEYVRAAPGGAG 232
Query: 122 GVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSG 181
GVK+I+NYAPVLKA+SRAK+RGFSDVLYLDSV KK LEE SSCN+F++KG ISTPAT+G
Sbjct: 233 GVKSITNYAPVLKALSRAKSRGFSDVLYLDSVKKKYLEEASSCNVFVVKGRTISTPATNG 292
Query: 182 TILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRI 241
TIL GITRKS++EIASD G+QV E+A+ VDE+++ADEVFCTGTAVVVAPVG+ITY+ KR+
Sbjct: 293 TILEGITRKSVMEIASDQGYQVVEKAVHVDEVMDADEVFCTGTAVVVAPVGTITYQEKRV 352
Query: 242 EFKTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 277
E+KTG +SV ++L S LVGIQTGLI+DNKGW +IN
Sbjct: 353 EYKTGDESVCQKLRSVLVGIQTGLIEDNKGWVTDIN 388
>gnl|CDD|178664 PLN03117, PLN03117, Branched-chain-amino-acid aminotransferase;
Provisional.
Length = 355
Score = 425 bits (1095), Expect = e-151
Identities = 175/277 (63%), Positives = 231/277 (83%), Gaps = 1/277 (0%)
Query: 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGK 60
+KAYR EDG++ LFRPDQNA+R+QTGA+R+CM PS++QF++AVKQT LANK+WVPPPGK
Sbjct: 76 LKAYRTEDGRITLFRPDQNALRMQTGADRLCMTPPSLEQFVEAVKQTVLANKKWVPPPGK 135
Query: 61 GSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGA 120
G+LYIRPLL+GSG +LG+APAPEYTFL++ASPVGNY K + LNL V+ + RA GG
Sbjct: 136 GTLYIRPLLIGSGAVLGVAPAPEYTFLIYASPVGNYHKAS-SGLNLKVDHKHRRAHSGGT 194
Query: 121 GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATS 180
GGVK+ +NY+PV+K++ AK+ GFSDVL+LD+ KN+EE+S+CNIFILKGNI+STP TS
Sbjct: 195 GGVKSCTNYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEELSACNIFILKGNIVSTPPTS 254
Query: 181 GTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKR 240
GTIL G+TRKSI E+A D G+QVEER + VDELLEA+EVFCTGTAVVV V ++T+ K+
Sbjct: 255 GTILPGVTRKSISELARDIGYQVEERDVSVDELLEAEEVFCTGTAVVVKAVETVTFHDKK 314
Query: 241 IEFKTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 277
++++TG +++S +L+ L IQ G+++D KGW VEI+
Sbjct: 315 VKYRTGEEALSTKLHLILTNIQMGVVEDKKGWMVEID 351
>gnl|CDD|178471 PLN02883, PLN02883, Branched-chain amino acid aminotransferase.
Length = 384
Score = 386 bits (993), Expect = e-135
Identities = 190/276 (68%), Positives = 226/276 (81%)
Query: 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGK 60
MKAYR EDG+++LFRP+ NA+R++ GAERMCM SPS+ QFI+ VKQT LAN+RWVPPPGK
Sbjct: 108 MKAYRGEDGRILLFRPELNAMRMKIGAERMCMHSPSVHQFIEGVKQTVLANRRWVPPPGK 167
Query: 61 GSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGA 120
GSLY+RPLL GSG LG+A APEYTFLVF SPV NYFKEG A LNLYVE+ RA GG
Sbjct: 168 GSLYLRPLLFGSGASLGVAAAPEYTFLVFGSPVQNYFKEGTAALNLYVEEVIPRAYLGGT 227
Query: 121 GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATS 180
GGVKAISNY PVL+ + RAK+RGFSDVLYLD+ KN+EEVS+ NIF++KGNII TPATS
Sbjct: 228 GGVKAISNYGPVLEVMRRAKSRGFSDVLYLDADTGKNIEEVSAANIFLVKGNIIVTPATS 287
Query: 181 GTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKR 240
GTIL GITRKSIIEIA D G++VEER +PV+EL EA+EVFCTGTA VA VGSIT++ R
Sbjct: 288 GTILGGITRKSIIEIALDLGYKVEERRVPVEELKEAEEVFCTGTAAGVASVGSITFKNTR 347
Query: 241 IEFKTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEI 276
E+K G V+++L S L+GIQTG I+D K W ++I
Sbjct: 348 TEYKVGDGIVTQQLRSILLGIQTGSIQDTKDWVLQI 383
>gnl|CDD|237363 PRK13357, PRK13357, branched-chain amino acid aminotransferase;
Provisional.
Length = 356
Score = 378 bits (974), Expect = e-132
Identities = 132/285 (46%), Positives = 176/285 (61%), Gaps = 10/285 (3%)
Query: 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGK 60
+KAYR +DG +VLFRPD NA RLQ A+R+ MP + F++AVKQ A++ WVPP G+
Sbjct: 72 LKAYRHKDGSIVLFRPDANAKRLQRSADRLLMPELPEELFLEAVKQLVKADRDWVPPYGE 131
Query: 61 G-SLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGG 119
G SLY+RP ++ + P LG+ PA EY F V ASPVG YFK G+ P++++V DE+ RA PGG
Sbjct: 132 GASLYLRPFMIATEPFLGVKPAEEYIFCVIASPVGAYFKGGVKPVSIWVSDEYDRAAPGG 191
Query: 120 AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIF-ILKGNIISTPA 178
G K NYA L A + AK +G VLYLD+V +EEV N F I K + TP
Sbjct: 192 TGAAKVGGNYAASLLAQAEAKEKGCDQVLYLDAVEHTYIEEVGGMNFFFITKDGTV-TPP 250
Query: 179 TSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEA------DEVFCTGTAVVVAPVG 232
SG+IL GITR S++++A D G VEER + +DE E F GTA V+ P+G
Sbjct: 251 LSGSILPGITRDSLLQLAEDLGLTVEERPVSIDEWQADAASGEFTEAFACGTAAVITPIG 310
Query: 233 SITYRGKRIEFKTG-AQSVSRELYSTLVGIQTGLIKDNKGWTVEI 276
I Y+ K G V+++LY L GIQ G ++D GW V++
Sbjct: 311 GIKYKDKEFVIGDGEVGPVTQKLYDELTGIQFGDVEDPHGWIVKV 355
>gnl|CDD|238798 cd01557, BCAT_beta_family, BCAT_beta_family: Branched-chain
aminotransferase catalyses the transamination of the
branched-chain amino acids leusine, isoleucine and
valine to their respective alpha-keto acids,
alpha-ketoisocaproate, alpha-keto-beta-methylvalerate
and alpha-ketoisovalerate. The enzyme requires pyridoxal
5'-phosphate (PLP) as a cofactor to catalyze the
reaction. It has been found that mammals have two foms
of the enzyme - mitochondrial and cytosolic forms while
bacteria contain only one form of the enzyme. The
mitochondrial form plays a significant role in skeletal
muscle glutamine and alanine synthesis and in interorgan
nitrogen metabolism.Members of this subgroup are widely
distributed in all three forms of life.
Length = 279
Score = 338 bits (868), Expect = e-117
Identities = 131/264 (49%), Positives = 163/264 (61%), Gaps = 3/264 (1%)
Query: 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGK 60
+KAYR DG++VLFRPD+NA RL A R+ +P S+++FIDA+K+ + WVP G
Sbjct: 19 LKAYRTPDGKIVLFRPDENAERLNRSARRLGLPPFSVEEFIDAIKELVKLDADWVPYGGG 78
Query: 61 GSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGA 120
SLYIRP + G+ P LG++PA EY F VFASPVG YFK G ++ V F RA PGG
Sbjct: 79 ASLYIRPFIFGTDPQLGVSPALEYLFAVFASPVGAYFKGGEKGVSALVS-SFRRAAPGGP 137
Query: 121 GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATS 180
G KA NYA L A A +G+ L+LD + EV + NIF +K + TP
Sbjct: 138 GAAKAGGNYAASLLAQKEAAEKGYDQALWLDG-AHGYVAEVGTMNIFFVKDGELITPPLD 196
Query: 181 GTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKR 240
G+IL GITR SI+E+A D G +VEER I DEL EADEVF TGTA VV PVG I YRGK
Sbjct: 197 GSILPGITRDSILELARDLGIKVEERPITRDELYEADEVFATGTAAVVTPVGEIDYRGKE 256
Query: 241 IEFKTGAQSVSRELYSTLVGIQTG 264
V+++LY L IQ G
Sbjct: 257 PGE-GEVGPVTKKLYDLLTDIQYG 279
>gnl|CDD|233278 TIGR01123, ilvE_II, branched-chain amino acid aminotransferase,
group II. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family less
similar to the DAAT family [Amino acid biosynthesis,
Pyruvate family].
Length = 313
Score = 304 bits (781), Expect = e-104
Identities = 138/283 (48%), Positives = 179/283 (63%), Gaps = 7/283 (2%)
Query: 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGK 60
+KAYR DG +VLFRPD NA RL+ A R+ MP + F++A++Q ANK WVPP G
Sbjct: 31 LKAYRCADGSIVLFRPDANAARLRRSARRLLMPELPDELFLEALRQLVKANKDWVPPYGS 90
Query: 61 G-SLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGG 119
G SLY+RP ++G+ P LG+ PAPEY F VFASPVG YFK GLAP++++V E+ RA PGG
Sbjct: 91 GASLYLRPFVIGTEPNLGVRPAPEYLFYVFASPVGAYFKGGLAPVSIFVTTEYDRAAPGG 150
Query: 120 AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIF-ILKGNIISTPA 178
G VK NYA L A ++A +G V+YLD V +EEV + N F I + TP
Sbjct: 151 TGAVKVGGNYAASLLAQAKAAEQGCDQVVYLDPVEHTYIEEVGAMNFFFITGDGELVTPP 210
Query: 179 TSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADE----VFCTGTAVVVAPVGSI 234
SG+IL GITR S++++A D G +VEER I +DEL E VF GTA V+ PVG I
Sbjct: 211 LSGSILPGITRDSLLQLAKDLGMEVEERRIDIDELKAFVEAGEEVFACGTAAVITPVGEI 270
Query: 235 TYRGKRIEFKTGAQS-VSRELYSTLVGIQTGLIKDNKGWTVEI 276
+ GK + F +G V++ LY L IQ G +D GW VE+
Sbjct: 271 QHGGKEVVFASGQPGEVTKALYDELTDIQYGDFEDPYGWIVEV 313
>gnl|CDD|238254 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependent Enzymes class
IV (PLPDE_IV). This D-amino acid superfamily, one of
five classes of PLPDE, consists of branched-chain amino
acid aminotransferases (BCAT), D-amino acid transferases
(DAAT), and 4-amino-4-deoxychorismate lyases (ADCL).
BCAT catalyzes the reversible transamination reaction
between the L-branched-chain amino and alpha-keto acids.
DAAT catalyzes the synthesis of D-glutamic acid and
D-alanine, and ADCL converts 4-amino-4-deoxychorismate
to p-aminobenzoate and pyruvate. Except for a few
enzymes, i. e., Escherichia coli and Salmonella BCATs,
which are homohexamers arranged as a double trimer, the
class IV PLPDEs are homodimers. Homodimer formation is
required for catalytic activity.
Length = 256
Score = 235 bits (603), Expect = 1e-77
Identities = 104/261 (39%), Positives = 136/261 (52%), Gaps = 21/261 (8%)
Query: 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPG 59
++A + LFR D++ RL A+R+ +P P ++ +A+K+ AN
Sbjct: 14 LRAGK-----GRLFRLDEHLDRLNRSAKRLGLPIPYDREELREALKELVAANN------- 61
Query: 60 KGSLYIRPLLVGSGPILGLAPAP--EYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATP 117
SLYIRPLL LG+AP P E TF+VFASPVG Y K G + L + RA P
Sbjct: 62 GASLYIRPLLTRGVGGLGVAPPPSPEPTFVVFASPVGAYAKGGEKGVRLITSPDRRRAAP 121
Query: 118 GGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTP 177
GG G K + A A G + L LD + E S+ N+FI+K + TP
Sbjct: 122 GGTGDAKT-GGNLNSVLAKQEAAEAGADEALLLDD--NGYVTEGSASNVFIVKDGELVTP 178
Query: 178 ATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYR 237
G IL GITR S+IE+A + G +VEER I +DEL ADEVF TGTA V PV I R
Sbjct: 179 PLDGGILPGITRDSVIELAKELGIKVEERPISLDELYAADEVFLTGTAAEVTPVTEIDGR 238
Query: 238 GKRIEFKTGAQSVSRELYSTL 258
G + K G V+R+L L
Sbjct: 239 GI-GDGKPG--PVTRKLRELL 256
>gnl|CDD|223193 COG0115, IlvE, Branched-chain amino acid
aminotransferase/4-amino-4-deoxychorismate lyase [Amino
acid transport and metabolism / Coenzyme metabolism].
Length = 284
Score = 207 bits (528), Expect = 5e-66
Identities = 102/269 (37%), Positives = 141/269 (52%), Gaps = 22/269 (8%)
Query: 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGK 60
++AY + LFR D++ RL+ A+R+ +P P ++ I+ + Q LA VP
Sbjct: 35 LRAYNGK-----LFRLDEHLARLKRSAKRLGLPRPESEEEIELLIQLLLAKNNLVPG--- 86
Query: 61 GSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLA--PLNLYVEDEFHRATPG 118
LYIRPL+ G G LG+ A E T +V ASPVG Y K G + L + R P
Sbjct: 87 --LYIRPLVRGGGGGLGVRDATEPTLIVAASPVGAYLKGGRLEKGVVLVISSPV-RRAPP 143
Query: 119 GAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN-IISTP 177
G G K NY + A AK G + L LD + E + N+F +KG+ ++ TP
Sbjct: 144 GPGAAKKTGNYLSSVLAKREAKAAGADEALLLDE--DGYVTEGAGSNVFFVKGDGVLVTP 201
Query: 178 ATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYR 237
SG IL GITR S++E+A + G VEER I +++L +ADEVF T TA V PVG I R
Sbjct: 202 PLSGGILPGITRDSLLELAKELGLTVEERPITLEDLKQADEVFLTNTAAGVTPVGLIDGR 261
Query: 238 GKRIEFKTGAQSVSRELYSTLVGIQTGLI 266
+ G V+++L L IQ G I
Sbjct: 262 ----VGQPG--PVTKKLRELLTDIQYGEI 284
>gnl|CDD|216275 pfam01063, Aminotran_4, Aminotransferase class IV. The D-amino
acid transferases (D-AAT) are required by bacteria to
catalyze the synthesis of D-glutamic acid and D-alanine,
which are essential constituents of bacterial cell wall
and are the building block for other D-amino acids.
Despite the difference in the structure of the
substrates, D-AATs and L-ATTs have strong similarity.
Length = 231
Score = 131 bits (331), Expect = 3e-37
Identities = 65/223 (29%), Positives = 100/223 (44%), Gaps = 13/223 (5%)
Query: 14 FRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSG 73
F D++ RL+ A+ + SI+ +++ AN GS +R L+
Sbjct: 1 FLLDEHLERLRRSAKALIGLPLSIEDLRKIIQELLEAN------GPAGSGRLRILVSRGD 54
Query: 74 PILGLAPAPEYTFLVFASPVGNYFK-EGLAPLN-LYVEDEFHRATPGGAGGVKAISNYAP 131
GL+P ++ + L L + G K +
Sbjct: 55 GGRGLSPPEGAIPIIVSLIALASSAPPRLLITVKLRLSSYPVPRPLAGH---KTTNYLDN 111
Query: 132 VLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKS 191
VL A+ A+ GF D L LD N+ E S+ NIFI+KG + TP IL GITR++
Sbjct: 112 VLAALRAAERAGFDDALLLDE--DGNVTEGSTSNIFIVKGGTLYTPPLESGILPGITRQA 169
Query: 192 IIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSI 234
++++A + G +VEER + + +L EADE F T + V PV SI
Sbjct: 170 LLDLAKELGIEVEERPLTLADLQEADEAFLTNSLRGVTPVTSI 212
>gnl|CDD|130192 TIGR01122, ilvE_I, branched-chain amino acid aminotransferase,
group I. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family more
strongly similar to the DAAT family [Amino acid
biosynthesis, Pyruvate family].
Length = 298
Score = 126 bits (319), Expect = 1e-34
Identities = 87/281 (30%), Positives = 132/281 (46%), Gaps = 28/281 (9%)
Query: 2 KAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGK 60
+AY + G +FR ++ RL A+ M P S ++ ++A ++T N
Sbjct: 32 RAYDTDKG-PAIFRLKEHIQRLYDSAKIYRMEIPYSKEELMEATRETLRKN-------NL 83
Query: 61 GSLYIRPLL-VGSGPILGLAPAPEYT--FLVFASPVGNYFKEGLAPLNLYVE-DEFHRAT 116
S YIRPL+ G G LGL P Y ++ A P G Y E + + + R
Sbjct: 84 RSAYIRPLVFRGDGD-LGLNPRAGYKPDVIIAAWPWGAYLGEEALEKGIDAKVSSWRRNA 142
Query: 117 PGGA-GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIIS 175
P KA NY L A S A+ G+ + + LD + + E S NIFI+K ++
Sbjct: 143 PNTIPTAAKAGGNYLNSLLAKSEARRHGYDEAILLDV--EGYVAEGSGENIFIVKDGVLF 200
Query: 176 TPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSIT 235
TP + +IL GITR ++I +A + G +V E+ I +EL ADE F TGTA + P+ +
Sbjct: 201 TPPVTSSILPGITRDTVITLAKELGIEVVEQPISREELYTADEAFFTGTAAEITPIREVD 260
Query: 236 YR----GKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGW 272
R G+R V+++L + TG +D GW
Sbjct: 261 GRKIGNGRR-------GPVTKKLQEAFFDLVTGGTEDYWGW 294
>gnl|CDD|235841 PRK06606, PRK06606, branched-chain amino acid aminotransferase;
Validated.
Length = 306
Score = 126 bits (318), Expect = 2e-34
Identities = 90/290 (31%), Positives = 130/290 (44%), Gaps = 45/290 (15%)
Query: 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPG 59
++AY G + FR ++ RL A+ + M P S+D+ ++A ++ N
Sbjct: 40 IRAYDTPKGPAI-FRLREHTKRLFNSAKILRMEIPYSVDELMEAQREVVRKNNL------ 92
Query: 60 KGSLYIRPLL-VGSGPILGLAPAPEYT---FLVFASPVGNYF-KEGLAP-LNLYVEDEFH 113
S YIRPL+ VG GL P + A P G Y +E L + + V +
Sbjct: 93 -KSAYIRPLVFVGDE---GLGVRPHGLPTDVAIAAWPWGAYLGEEALEKGIRVKVS-SWT 147
Query: 114 RA----TPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSC---NI 166
R P A KA NY + A + A+ G+ + L LD VS NI
Sbjct: 148 RHAPNSIPTRA---KASGNYLNSILAKTEARRNGYDEALLLDVEGY-----VSEGSGENI 199
Query: 167 FILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAV 226
FI++ ++ TP + +IL GITR ++I +A D G +V ER I DEL ADEVF TGTA
Sbjct: 200 FIVRDGVLYTPPLTSSILEGITRDTVITLAKDLGIEVIERRITRDELYIADEVFFTGTAA 259
Query: 227 VVAPVGSITYR----GKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGW 272
V P+ + R GKR ++ +L S I G + W
Sbjct: 260 EVTPIREVDGRQIGNGKR-------GPITEKLQSAYFDIVRGRTEKYAHW 302
>gnl|CDD|238799 cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like):
D-amino acid aminotransferase catalyzes transamination
between D-amino acids and their respective alpha-keto
acids. It plays a major role in the synthesis of
bacterial cell wall components like D-alanine and
D-glutamate in addition to other D-amino acids. The
enzyme like other members of this superfamily requires
PLP as a cofactor. Members of this subgroup are found in
all three forms of life.
Length = 270
Score = 109 bits (275), Expect = 1e-28
Identities = 65/238 (27%), Positives = 101/238 (42%), Gaps = 40/238 (16%)
Query: 12 VLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLV 70
F D++ RL A+ + + P + ++ + +++ N+ G+G +YI+ +
Sbjct: 37 KPFALDEHLDRLYRSAKELRIDIPYTREELKELIRELVAKNEG-----GEGDVYIQ-VTR 90
Query: 71 GSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAIS--- 127
G GP P +V + L P L GV+ I+
Sbjct: 91 GVGPRGHDFPKCVKPTVVIITQPLP-----LPPAELL------------EKGVRVITVPD 133
Query: 128 -----------NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIIST 176
N + A AK G + + LD+ + E SS N+FI+K ++ T
Sbjct: 134 IRWLRCDIKSLNLLNNVLAKQEAKEAGADEAILLDADG--LVTEGSSSNVFIVKNGVLVT 191
Query: 177 PATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSI 234
P IL GITR ++IE+A + G VEER ++EL ADEVF T T V PV I
Sbjct: 192 PPLDNGILPGITRATVIELAKELGIPVEERPFSLEELYTADEVFLTSTTAEVMPVVEI 249
>gnl|CDD|237362 PRK13356, PRK13356, aminotransferase; Provisional.
Length = 286
Score = 105 bits (264), Expect = 8e-27
Identities = 61/181 (33%), Positives = 90/181 (49%), Gaps = 17/181 (9%)
Query: 58 PGKGSLYIRPLLVG-SGPILGLAPAPEYT---FLVFASPVGNY--FKEGLAPLNLYVEDE 111
+LYIRP+ G G+AP PE T + +P+ F L+P
Sbjct: 87 DPDTALYIRPMYWAEDGFASGVAPDPESTRFALCLEEAPMPEPTGFSLTLSP-------- 138
Query: 112 FHRATPGGA-GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILK 170
F R T A KA Y +A+ A++RGF + L LD + N+ E ++ N+F++K
Sbjct: 139 FRRPTLEMAPTDAKAGCLYPNNARALREARSRGFDNALVLDMLG--NVAETATSNVFMVK 196
Query: 171 GNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAP 230
++ TP +GT L GITR+ +I + + G V E + ++ LEADEVF TG V P
Sbjct: 197 DGVVFTPVPNGTFLNGITRQRVIALLREDGVTVVETTLTYEDFLEADEVFSTGNYSKVVP 256
Query: 231 V 231
V
Sbjct: 257 V 257
>gnl|CDD|238800 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychorismate lyase: is
a member of the fold-type IV of PLP dependent enzymes
that converts 4-amino-4-deoxychorismate (ADC) to
p-aminobenzoate and pyruvate. Based on the information
available from the crystal structure, most members of
this subgroup are likely to function as dimers. The
enzyme from E.Coli, the structure of which is available,
is a homodimer that is folded into a small and a larger
domain. The coenzyme pyridoxal 5; -phosphate resides at
the interface of the two domains that is linked by a
flexible loop. Members of this subgroup are found in
Eukaryotes and bacteria.
Length = 249
Score = 97.0 bits (242), Expect = 5e-24
Identities = 72/242 (29%), Positives = 118/242 (48%), Gaps = 32/242 (13%)
Query: 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGK 60
M+A DG+L L D + RL+ A R+ +P P + + A++ AN +
Sbjct: 14 MRAL---DGRLFLL--DAHLARLERSARRLGIPEPDLPRLRAALESLLAAN-----DIDE 63
Query: 61 GSLYIRPLLV-GSGPILGLAPA--PEYTFLVFASPVGNYFKE-----GLAPLNLYVEDEF 112
G IR +L G G G AP+ P V P+ +++ P+ L
Sbjct: 64 G--RIRLILSRGPGG-RGYAPSVCPGPALYVSVIPLPPAWRQDGVRLITCPVRL------ 114
Query: 113 HRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN 172
G+K + NY + A A++RG + L+LD+ + E ++ N+F +K
Sbjct: 115 --GEQPLLAGLKHL-NYLENVLAKREARDRGADEALFLDTDG--RVIEGTASNLFFVKDG 169
Query: 173 IISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVG 232
+ TP+ LAGITR+ +IE+A+ G+ V+ER + +++LL ADE F T + + VAPV
Sbjct: 170 ELVTPSLDRGGLAGITRQRVIELAAAKGYAVDERPLRLEDLLAADEAFLTNSLLGVAPVT 229
Query: 233 SI 234
+I
Sbjct: 230 AI 231
>gnl|CDD|181025 PRK07544, PRK07544, branched-chain amino acid aminotransferase;
Validated.
Length = 292
Score = 90.4 bits (225), Expect = 3e-21
Identities = 81/261 (31%), Positives = 123/261 (47%), Gaps = 35/261 (13%)
Query: 13 LFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVG 71
+F+ +++ RL+ AE + P S+ + IDA K+ LA Y+RP+
Sbjct: 49 IFKLREHSERLRRSAELLDFEIPYSVAE-IDAAKKETLAANGLT------DAYVRPVAWR 101
Query: 72 SGPILGLAPAPEYTFLVFAS-PVGNYF----KEGLAPLNLYVEDEFHRATPGGA-GGVKA 125
++G++ L A+ +YF K L++ ++ R P A KA
Sbjct: 102 GSEMMGVSAQQNKIHLAIAAWEWPSYFDPEAKMKGIRLDI---AKWRRPDPETAPSAAKA 158
Query: 126 ISNYAPVLKAIS--RAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTI 183
Y ++ IS A+ +G++D L LD + + E + NIF +K +I TP T
Sbjct: 159 AGLY--MICTISKHAAEAKGYADALMLDY--RGYVAEATGANIFFVKDGVIHTP-TPDCF 213
Query: 184 LAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSI-TYRGKRIE 242
L GITR+++IE+A G +V ER I +EL E F TGTA V PV I YR
Sbjct: 214 LDGITRQTVIELAKRRGIEVVERHIMPEELAGFSECFLTGTAAEVTPVSEIGEYR----- 268
Query: 243 FKTGAQSVSREL---YSTLVG 260
F GA ++R+L Y LV
Sbjct: 269 FTPGA--ITRDLMDDYEALVR 287
>gnl|CDD|236238 PRK08320, PRK08320, branched-chain amino acid aminotransferase;
Reviewed.
Length = 288
Score = 81.5 bits (202), Expect = 4e-18
Identities = 73/252 (28%), Positives = 103/252 (40%), Gaps = 70/252 (27%)
Query: 12 VLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLL- 69
+FR ++ RL A+ + + P S ++ + V +T N YIR ++
Sbjct: 42 RVFRLKEHIDRLYDSAKAIMLEIPLSKEEMTEIVLETLRKN-------NLRDAYIRLVVS 94
Query: 70 --VGSGPILGLAP--APEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKA 125
VG LGL P P+ T + A P+G Y E LY G
Sbjct: 95 RGVGD---LGLDPRKCPKPTVVCIAEPIGLYPGE------LY--------EKG------- 130
Query: 126 ISNYAPVLKAISRAKNRGFSDVL--------YLDSV------NKKNLEE---------VS 162
LK I+ + R D L YL+++ N ++E V+
Sbjct: 131 -------LKVITVSTRRNRPDALSPQVKSLNYLNNILAKIEANLAGVDEAIMLNDEGYVA 183
Query: 163 SC---NIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEV 219
NIFI+K + TP T L GITR ++IEIA + G V E + +L ADEV
Sbjct: 184 EGTGDNIFIVKNGKLITPPTYAGALEGITRNAVIEIAKELGIPVREELFTLHDLYTADEV 243
Query: 220 FCTGTAVVVAPV 231
F TGTA V PV
Sbjct: 244 FLTGTAAEVIPV 255
>gnl|CDD|236114 PRK07849, PRK07849, 4-amino-4-deoxychorismate lyase; Provisional.
Length = 292
Score = 77.3 bits (191), Expect = 1e-16
Identities = 63/228 (27%), Positives = 100/228 (43%), Gaps = 27/228 (11%)
Query: 17 DQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSL---YIRPLLVGSG 73
+ + RL A + +P P +D++ AV LA + W P + +L Y R G
Sbjct: 56 EAHLERLARSAALLDLPEPDLDRWRRAV---ELAIEEWRAPEDEAALRLVYSRGRESGGA 112
Query: 74 PILGLAPAPEYTFLVFASPVGNYFK----EGLAPLNL---YVEDEFHRATPGGAGGVKAI 126
P T V SPV EG++ + L Y D RA P G K +
Sbjct: 113 P----------TAWVTVSPVPERVARARREGVSVITLDRGYPSDAAERA-PWLLAGAKTL 161
Query: 127 SNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAG 186
S YA + A+ A RG DV++ + + LE +S + I + + TP IL G
Sbjct: 162 S-YAVNMAALRYAARRGADDVIFTST-DGYVLEGPTS-TVVIATDDRLLTPPPWYGILPG 218
Query: 187 ITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSI 234
T+ ++ E+A + G+ E RA+ +L AD V+ + + A V ++
Sbjct: 219 TTQAALFEVAREKGWDCEYRALRPADLFAADGVWLVSSVRLAARVHTL 266
>gnl|CDD|132501 TIGR03461, pabC_Proteo, aminodeoxychorismate lyase. Members of
this protein family are aminodeoxychorismate lyase (ADC
lyase), EC 4.1.3.38, the PabC protein of PABA
biosynthesis. PABA (para-aminobenzoate) is a precursor
of folate, needed for de novo purine biosynthesis. This
enzyme is a pyridoxal-phosphate-binding protein in the
class IV aminotransferase family (pfam01063)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Folic acid].
Length = 261
Score = 73.8 bits (182), Expect = 2e-15
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 141 NRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCG 200
N + L LD+ N+ E ++ NIF KGN + TP S +AG+ R+ ++ + G
Sbjct: 154 NSEADEALVLDTDG--NVVECTAANIFWRKGNQVFTPDLSYCGVAGVMRQHVLALLPALG 211
Query: 201 FQVEERAIPVDELLEADEVFCTGTAVVVAPVGSI 234
+++EE ++ELL ADEVF T + + V PV +I
Sbjct: 212 YEIEEVKAGLEELLSADEVFITNSLMGVVPVNAI 245
>gnl|CDD|130191 TIGR01121, D_amino_aminoT, D-amino acid aminotransferase. This
enzyme is a homodimer. The pyridoxal phosphate
attachment site is the Lys at position 146 of the seed
alignment, in the motif Cys-Asp-Ile-Lys-Ser-Leu-Asn.
Specificity is broad for various D-amino acids, and
differs among members of the family; the family is
designated equivalog, but with this caveat attached
[Energy metabolism, Amino acids and amines].
Length = 276
Score = 68.6 bits (168), Expect = 2e-13
Identities = 29/75 (38%), Positives = 41/75 (54%)
Query: 160 EVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEV 219
E SS N++ +K ++ T + IL GITR I+ A + G V+E +ELL ADEV
Sbjct: 176 EGSSSNVYGIKDGVLYTHPANNLILNGITRMVILACAEENGIPVKEEPFTKEELLNADEV 235
Query: 220 FCTGTAVVVAPVGSI 234
F + T + PV I
Sbjct: 236 FVSSTTAEITPVIEI 250
>gnl|CDD|180656 PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed.
Length = 286
Score = 68.4 bits (168), Expect = 2e-13
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 160 EVSSCNIFILK--GNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEAD 217
E +S N +I+ G +++ PA + IL GITR ++I++A + G +VEER + E A
Sbjct: 181 EGASSNAWIVTKDGKLVTRPADNF-ILPGITRHTLIDLAKELGLEVEERPFTLQEAYAAR 239
Query: 218 EVFCTGTAVVVAPVGSI 234
E F T + V PV I
Sbjct: 240 EAFITAASSFVFPVVQI 256
>gnl|CDD|235696 PRK06092, PRK06092, 4-amino-4-deoxychorismate lyase; Reviewed.
Length = 268
Score = 67.6 bits (166), Expect = 3e-13
Identities = 69/283 (24%), Positives = 106/283 (37%), Gaps = 74/283 (26%)
Query: 5 RKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLY 64
R DGQ+ L ++ RLQ ER+ +P Q +KQ A G L
Sbjct: 30 RVRDGQVSLL--SRHLQRLQDACERLAIPLDDWAQLEQEMKQLAAEL-------ENGVLK 80
Query: 65 I---RPLLVGSG-----------P--ILGLAPAPEYTFL-------VFASPVGNYFKEGL 101
+ R GSG P IL ++P P + + P + G
Sbjct: 81 VIISR----GSGGRGYSPAGCAAPTRILSVSPYPAHYSRWREQGITLALCPT----RLGR 132
Query: 102 APLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEV 161
PL G+K ++ VL + + + L LDS + E
Sbjct: 133 NPL---------------LAGIKHLNRLEQVL-IRAELEQTEADEALVLDSEG--WVIEC 174
Query: 162 SSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFC 221
+ N+F KG ++ TP +AG+ R+ I+E+ + G+ V E ++ELL+ADEVF
Sbjct: 175 CAANLFWRKGGVVYTPDLDQCGVAGVMRQFILELLAQSGYPVVEVDASLEELLQADEVFI 234
Query: 222 TGTAVVVAPV---GSITYRGKRIEFKTGAQSVSRELYSTLVGI 261
+ + V PV G +Y S L L +
Sbjct: 235 CNSLMPVWPVRAIGETSYS-------------SGTLTRYLQPL 264
>gnl|CDD|181067 PRK07650, PRK07650, 4-amino-4-deoxychorismate lyase; Provisional.
Length = 283
Score = 67.3 bits (165), Expect = 5e-13
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 165 NIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGT 224
N+F +KG+I+ TP+ IL GITR +I++ + G +V+E +ELL ADEVF T +
Sbjct: 182 NLFWVKGDIVYTPSLETGILNGITRAFVIKVLEELGIEVKEGFYTKEELLSADEVFVTNS 241
Query: 225 AVVVAP---VGSITYRGKR 240
+ P + + GK
Sbjct: 242 IQEIVPLTRIEERDFPGKV 260
>gnl|CDD|183549 PRK12479, PRK12479, branched-chain amino acid aminotransferase;
Provisional.
Length = 299
Score = 59.2 bits (143), Expect = 3e-10
Identities = 65/234 (27%), Positives = 106/234 (45%), Gaps = 24/234 (10%)
Query: 13 LFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVG 71
+F ++ RL A+ + + P ++D+ +AV QT N YIR L+V
Sbjct: 44 VFCLKEHVKRLYESAKSILLTIPLTVDEMEEAVLQTLQKN-------EYADAYIR-LIVS 95
Query: 72 SGP-ILGLAP--APEYTFLVFASPVG----NYFKEGLAPLNLYVEDEFHRATPGGAG-GV 123
G LGL P + + ++ A + ++ GL+ +++ R TP +
Sbjct: 96 RGKGDLGLDPRSCVKPSVIIIAEQLKLFPQEFYDNGLSVVSVASR----RNTPDALDPRI 151
Query: 124 KAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTI 183
K+++ VL I A G + L L+ + + E S N+F++K + TP +
Sbjct: 152 KSMNYLNNVLVKI-EAAQAGVLEALMLN--QQGYVCEGSGDNVFVVKDGKVLTPPSYLGA 208
Query: 184 LAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYR 237
L GITR S+IE+ EER ++ ADEVF TGTA + PV + R
Sbjct: 209 LEGITRNSVIELCERLSIPCEERPFTRHDVYVADEVFLTGTAAELIPVVKVDSR 262
>gnl|CDD|171470 PRK12400, PRK12400, D-amino acid aminotransferase; Reviewed.
Length = 290
Score = 51.2 bits (122), Expect = 2e-07
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 17/124 (13%)
Query: 122 GVKAIS--------------NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIF 167
GV+AIS N P + A ++A+ +G + L+ V + E S N F
Sbjct: 134 GVRAISEPDTRWLRCDIKSLNLLPNILAATKAERKGCKEALF---VRNGTVTEGSHSNFF 190
Query: 168 ILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVV 227
++K + T + IL GI R+ ++ +A V+E V ++ +ADE F TGT +
Sbjct: 191 LIKNGTLYTHPANHLILNGIIRQYVLSLAKTLRIPVQEELFSVRDVYQADECFFTGTTIE 250
Query: 228 VAPV 231
+ P+
Sbjct: 251 ILPM 254
>gnl|CDD|215454 PLN02845, PLN02845, Branched-chain-amino-acid aminotransferase-like
protein.
Length = 336
Score = 37.3 bits (87), Expect = 0.006
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 128 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNI-FILKGNIISTPATSGTILAG 186
NY P + A+ RG ++LD + + E + N+ F+ + P IL+G
Sbjct: 188 NYLPNALSQMEAEERGAFAGIWLD--EEGFVAEGPNMNVAFLTNDGELVLPPFD-KILSG 244
Query: 187 ITRKSIIEIA-----SDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPV 231
T + ++E+A V++R I V+E ADE+ G+ V V P+
Sbjct: 245 CTARRVLELAPRLVSPGDLRGVKQRKISVEEAKAADEMMLIGSGVPVLPI 294
>gnl|CDD|100037 cd06061, PurM-like1, AIR synthase (PurM) related protein, subgroup
1 of unknown function. The family of PurM related
proteins includes Hydrogen expression/formation protein
HypE, AIR synthases, FGAM synthase and Selenophosphate
synthetase (SelD). They all contain two conserved
domains and seem to dimerize. The N-terminal domain
forms the dimer interface and is a putative ATP binding
domain.
Length = 298
Score = 31.4 bits (72), Expect = 0.44
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 178 ATSGTILAGITRKSIIEIASDCGFQVEERAIPVDE 212
AT G IL + + AS G ++E+ IP+ +
Sbjct: 216 ATEGGILGALWE---VAEASGVGLRIEKDKIPIRQ 247
>gnl|CDD|169002 PRK07546, PRK07546, hypothetical protein; Provisional.
Length = 209
Score = 30.3 bits (69), Expect = 0.77
Identities = 41/211 (19%), Positives = 74/211 (35%), Gaps = 34/211 (16%)
Query: 13 LFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGS 72
R D++ RL+ A + P AV+ P L +R L
Sbjct: 18 FPRLDRHLARLERSARALGFPCD-----PAAVRAKLAEAVAGAQGP----LRLRLTLARD 68
Query: 73 GPI-LGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAP 131
G + + AP P P ++ +A L D R K + A
Sbjct: 69 GRLTVETAPLP-------PLPPDTVWRVAIARTRLDSADPLLR--------YKT-TRRAA 112
Query: 132 VLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFI-LKGNIISTPATSGTILAGITRK 190
A + +V+ L+ + + E + N+F+ G +++TP S +L G+ R
Sbjct: 113 YDAARAELPPAEADEVILLNE--RGEVCEGTITNVFLDRGGGMLTTPPLSCGLLPGVLRA 170
Query: 191 SIIEIASDCGFQVEERAIPVDELLEADEVFC 221
++ + E + VD+L A ++
Sbjct: 171 ELL-----DAGRAREAVLTVDDLKSARAIWV 196
>gnl|CDD|111373 pfam02467, Whib, Transcription factor WhiB. WhiB is a putative
transcription factor in Actinobacteria, required for
differentiation and sporulation.
Length = 66
Score = 27.5 bits (61), Expect = 1.8
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 5 RKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQ 39
R D +L F P++ R A+R+CM P + +
Sbjct: 8 RGTDPEL--FFPERGYPRSAREAKRICMRCPVLQE 40
>gnl|CDD|226222 COG3698, COG3698, Predicted periplasmic protein [Function unknown].
Length = 250
Score = 28.9 bits (65), Expect = 2.2
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 76 LGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGV 123
L A + L+FA G Y APL LYVE+ + AGG
Sbjct: 69 LLAALNKQGQSLLFAMNGGMY-HPDYAPLGLYVENGKEQVPLNTAGGE 115
>gnl|CDD|205395 pfam13214, DUF4022, Protein of unknown function (DUF4022). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria. Proteins
in this family are typically between 73 and 85 amino
acids in length.
Length = 83
Score = 26.8 bits (59), Expect = 3.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 68 LLVGSGPILGLAPAPEYTFL 87
LL+G+ ILGL AP Y F+
Sbjct: 59 LLLGTASILGLLAAPAYFFI 78
>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase. This family contains
acyltransferases involved in phospholipid biosynthesis
and other proteins of unknown function. This family also
includes tafazzin, the Barth syndrome gene.
Length = 131
Score = 27.6 bits (62), Expect = 3.9
Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 22/122 (18%)
Query: 142 RGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATS-GTILAG---ITRKSIIEIAS 197
+ + D L L + K + +F+ K +++ P L G I RK+
Sbjct: 23 QSYLDPLLLSLLLPKRGRPL----VFVAKDELLNLPLLGWLMRLLGCIFIDRKNA----- 73
Query: 198 DCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYST 257
++ A ++ L+E + G V++ P G+ + G+ + FK GA ++RE
Sbjct: 74 ------KDAANTLEYLVE---LLREGELVLIFPEGTRSRGGELLPFKKGAFRLAREAGVP 124
Query: 258 LV 259
+V
Sbjct: 125 IV 126
>gnl|CDD|214724 smart00563, PlsC, Phosphate acyltransferases. Function in
phospholipid biosynthesis and have either
glycerolphosphate, 1-acylglycerolphosphate, or
2-acylglycerolphosphoethanolamine acyltransferase
activities. Tafazzin, the product of the gene mutated in
patients with Barth syndrome, is a member of this
family.
Length = 118
Score = 27.3 bits (61), Expect = 4.0
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 204 EERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLV 259
L EA E+ G +++ P G+ + GK + FK GA ++ E +V
Sbjct: 56 SNGRKARAALREAVELLKEGEWLLIFPEGTRSRPGKLLPFKKGAARLALEAGVPIV 111
>gnl|CDD|237914 PRK15122, PRK15122, magnesium-transporting ATPase; Provisional.
Length = 903
Score = 28.5 bits (64), Expect = 4.6
Identities = 19/43 (44%), Positives = 20/43 (46%), Gaps = 11/43 (25%)
Query: 222 TGTAVVVAPVGSITYRG--------KRIE--FKTGAQSVSREL 254
T TAVVVA GS TY G R + F G SVS L
Sbjct: 253 TATAVVVA-TGSRTYFGSLAKSIVGTRAQTAFDRGVNSVSWLL 294
>gnl|CDD|235934 PRK07101, PRK07101, hypothetical protein; Provisional.
Length = 187
Score = 27.2 bits (61), Expect = 6.6
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 162 SSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEV 219
S N+ G TP +L G R ++ D G ++E+ I V++LL+ +E+
Sbjct: 128 SIGNLAFFDGKQWFTPKKP--LLKGTQRARLL----DEGK-IKEKDITVEDLLQYEEI 178
>gnl|CDD|221146 pfam11597, Med13_N, Mediator complex subunit 13 N-terminal.
Mediator is a large complex of up to 33 proteins that is
conserved from plants through fungi to humans - the
number and representation of individual subunits varying
with species. It is arranged into four different
sections, a core, a head, a tail and a kinase-activity
part, and the number of subunits within each of these is
what varies with species. Overall, Mediator regulates
the transcriptional activity of RNA polymerase II but it
would appear that each of the four different sections
has a slightly different function. Med13 is part of the
ancillary kinase module, together with Med12, CDK8 and
CycC, which in yeast is implicated in transcriptional
repression, though most of this activity is likely
attributable to the CDK8 kinase. The large Med12 and
Med13 proteins are required for specific developmental
processes in Drosophila, zebrafish, and Caenorhabditis
elegans but their biochemical functions are not
understood.
Length = 370
Score = 27.9 bits (62), Expect = 7.1
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 206 RAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTG 264
+ + + + E GT V AP GSI + + G Q S + + V +
Sbjct: 238 VLVDLSDSPQMIEDLPPGTDVWPAPSGSI---ARLVSTVDGTQLASDDPSPSSVKLTPP 293
>gnl|CDD|181983 PRK09603, PRK09603, bifunctional DNA-directed RNA polymerase subunit
beta/beta'; Reviewed.
Length = 2890
Score = 28.0 bits (62), Expect = 8.6
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 17/103 (16%)
Query: 151 DSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSI--IEIASDCGFQVEER-- 206
D V+KK +E ++ + LKG PA + +L GITR +I I S FQ +
Sbjct: 2788 DLVSKKLFKEENA-RVIALKGE----PAIAEPVLLGITRAAIGSDSIISAASFQETTKVL 2842
Query: 207 -----AIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFK 244
A+ D L + E G + PVG+ Y+ K+I +
Sbjct: 2843 TEASIAMKKDFLEDLKENVVLGRMI---PVGTGMYKNKKIVLR 2882
>gnl|CDD|226837 COG4403, LcnDR2, Lantibiotic modifying enzyme [Defense mechanisms].
Length = 963
Score = 27.4 bits (61), Expect = 9.2
Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 17/120 (14%)
Query: 132 VLKAISRAKNRGFSDVL-YLDSVNKKNLEEVSSCNIFILKGNIIS------TPATSGTIL 184
+ I + F V+ LD + ++LE ++I+K + IS P +
Sbjct: 533 GMIIIDLFQTSLFDFVIGSLDQLGVEDLER----QLYIIKISFISVKINKRKPVNFLNLS 588
Query: 185 AGIT--RKSIIEIASDCGFQVEERAIPVDELLEAD----EVFCTGTAVVVAPVGSITYRG 238
+ T + + IA+D G + ++ I + E G ++P+G+ Y G
Sbjct: 589 SKHTIDNEYFVSIANDIGEHIIKQLIIGVDDFETSLIWISTTFEGQGWSLSPLGNDLYDG 648
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.137 0.397
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,485,790
Number of extensions: 1428277
Number of successful extensions: 1257
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1222
Number of HSP's successfully gapped: 51
Length of query: 277
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 181
Effective length of database: 6,679,618
Effective search space: 1209010858
Effective search space used: 1209010858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.2 bits)