RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 023788
(277 letters)
>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid
aminotransferase {Human (Homo sapiens), mitochondrial
[TaxId: 9606]}
Length = 363
Score = 183 bits (464), Expect = 2e-56
Identities = 90/290 (31%), Positives = 136/290 (46%), Gaps = 16/290 (5%)
Query: 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGK 60
MKA++ +D Q+ LFRP N R+ A R+C+PS + ++ +++ +K WVP
Sbjct: 76 MKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAG 135
Query: 61 GSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFK-EGLAPLNLYVEDEFHRATPGG 119
SLY+RP+L+G+ P LG++ V PVG YF + P++L + F RA GG
Sbjct: 136 TSLYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGG 195
Query: 120 AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN----IIS 175
G K NY P + A RG VL+L + + E + +
Sbjct: 196 VGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELV 255
Query: 176 TPATSGTILAGITRKSIIEIASDCG-FQVEERAIPVDELLEA------DEVFCTGTAVVV 228
TP +G IL G+ R+S++++A G F+V ER I + +LL A EVF +GTA V
Sbjct: 256 TPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQV 315
Query: 229 APVGSITYRGKRIEFKTGAQ--SVSRELYSTLVGIQTGLIKDNKGWTVEI 276
PV I Y+ + + T + L IQ G W +
Sbjct: 316 CPVHRILYKDRNLHIPTMENGPELILRFQKELKEIQYG--IRAHEWMFPV 363
>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase
{Escherichia coli [TaxId: 562]}
Length = 304
Score = 155 bits (392), Expect = 3e-46
Identities = 74/282 (26%), Positives = 126/282 (44%), Gaps = 18/282 (6%)
Query: 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGK 60
++ Y G V+FR ++ RL A+ P + A + +
Sbjct: 36 IRCYDSHKGP-VVFRHREHMQRLHDSAKIYRFPVSQSIDELME------ACRDVIRKNNL 88
Query: 61 GSLYIRPLLVGSGPILGLAPAPEYTF--LVFASPVGNYFKEGLAPLNL-YVEDEFHRATP 117
S YIRPL+ +G+ P Y+ ++ A P G Y + + ++RA P
Sbjct: 89 TSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVSSWNRAAP 148
Query: 118 GGAGGVKAIS-NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIIST 176
NY L S A+ G+ + + LD + E + N+F +K ++ T
Sbjct: 149 NTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIALD--VNGYISEGAGENLFEVKDGVLFT 206
Query: 177 PATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITY 236
P + + L GITR +II++A + G +V E+ + + L ADEVF +GTA + PV S+
Sbjct: 207 PPFTSSALPGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSV-- 264
Query: 237 RGKRI-EFKTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 277
G ++ E + G V++ + G+ TG +D GW ++N
Sbjct: 265 DGIQVGEGRCG--PVTKRIQQAFFGLFTGETEDKWGWLDQVN 304
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp.,
strain YM-1 [TaxId: 1409]}
Length = 277
Score = 90.4 bits (223), Expect = 5e-22
Identities = 56/257 (21%), Positives = 92/257 (35%), Gaps = 23/257 (8%)
Query: 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFI-DAVKQTALANKRWVPPPG 59
+K Y E +F +++ RL AE++ + P + + N+
Sbjct: 34 VKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKNELN----- 83
Query: 60 KGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGG 119
G +Y + S ++ + E L E R
Sbjct: 84 TGHIYFQVTRGTSPRAHQFPENTVKPVIIGYTKENPRPLENLEKGVKATFVEDIRWLRCD 143
Query: 120 AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPAT 179
+ N + A A +G + + + E SS N+F +K I+ T
Sbjct: 144 IKSL----NLLGAVLAKQEAHEKGCYEAILHR---NNTVTEGSSSNVFGIKDGILYTHPA 196
Query: 180 SGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGK 239
+ IL GITR +I A++ V+E E L+ DE+F T T + PV I GK
Sbjct: 197 NNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSEITPVIEI--DGK 254
Query: 240 RI-EFKTGAQSVSRELY 255
I + K G +R+L
Sbjct: 255 LIRDGKVG--EWTRKLQ 269
>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli
[TaxId: 562]}
Length = 269
Score = 85.9 bits (211), Expect = 2e-20
Identities = 40/246 (16%), Positives = 79/246 (32%), Gaps = 19/246 (7%)
Query: 1 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGK 60
+ DG++ + RLQ +R+ + Q K
Sbjct: 29 ARVI---DGKV--SLLSAHIQRLQDACQRLMISCDFWPQLEQE-------MKTLAAEQQN 76
Query: 61 GSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGA 120
G L + G + T ++ + ++
Sbjct: 77 GVLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYDRLRNEGITLALSPVRLGRNPHL 136
Query: 121 GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATS 180
G+K ++ VL + L ++ + E + N+F KGN++ TP
Sbjct: 137 AGIKHLNRLEQVLIRSHLEQTNADE---ALVLDSEGWVTECCAANLFWRKGNVVYTPRLD 193
Query: 181 GTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKR 240
+ GI R+ I + + +Q+ E ++E L+ADE+ + V PV +
Sbjct: 194 QAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQADEMVICNALMPVMPVCAC----GD 249
Query: 241 IEFKTG 246
+ F +
Sbjct: 250 VSFSSA 255
>d2j5ya1 a.8.1.2 (A:1-53) PAB {Peptostreptococcus magnus [TaxId:
1260]}
Length = 53
Score = 25.0 bits (54), Expect = 2.2
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 134 KAISRAKNRGFSDVLYLDSVNK-KNLEEVSSCNIFILK 170
AI+ K G + Y +++NK K +EEV++ ILK
Sbjct: 13 DAIAELKKAGITSDFYFNAINKAKTVEEVNALKNEILK 50
>d1b77a1 d.131.1.2 (A:1-110) gp45 sliding clamp {Bacteriophage RB69
[TaxId: 12353]}
Length = 110
Score = 25.1 bits (55), Expect = 4.9
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 156 KNLEEVSSCNIFILKGNIISTPATSGTILA 185
KN ++S I + +G I T A +GT A
Sbjct: 12 KNFASINS-GILLSQGKFIMTRAVNGTTYA 40
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.397
Gapped
Lambda K H
0.267 0.0560 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,028,070
Number of extensions: 48276
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 7
Length of query: 277
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 193
Effective length of database: 1,254,276
Effective search space: 242075268
Effective search space used: 242075268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.2 bits)