BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023789
(277 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6PIX5|RHDF1_MOUSE Inactive rhomboid protein 1 OS=Mus musculus GN=Rhbdf1 PE=1 SV=2
Length = 856
Score = 98.6 bits (244), Expect = 5e-20, Method: Composition-based stats.
Identities = 58/149 (38%), Positives = 83/149 (55%), Gaps = 6/149 (4%)
Query: 88 NQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLH 147
+Q YRL S++LHAGI+H +V++ M V LE+ G+ RIA +YLLSG G+L S +
Sbjct: 652 DQFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGITGNLASAIF 711
Query: 148 HKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGV 207
+ E VG +G+ FG+L + EL +W I A + L +V+ AFG +P
Sbjct: 712 LPYRAE---VGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFAFGLLP-- 766
Query: 208 DGVDNLAHIGGFASGVLLGFILFLRPQYG 236
+DN AHI GF SG+ L F +G
Sbjct: 767 -WIDNFAHISGFVSGLFLSFAFLPYISFG 794
>sp|Q499S9|RHDF1_RAT Inactive rhomboid protein 1 OS=Rattus norvegicus GN=Rhbdf1 PE=2
SV=1
Length = 856
Score = 98.2 bits (243), Expect = 6e-20, Method: Composition-based stats.
Identities = 58/149 (38%), Positives = 83/149 (55%), Gaps = 6/149 (4%)
Query: 88 NQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLH 147
+Q YRL S++LHAGI+H +V++ M V LE+ G+ RIA +YLLSG G+L S +
Sbjct: 652 DQFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIF 711
Query: 148 HKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGV 207
+ E VG +G+ FG+L + EL +W I A + L +V+ AFG +P
Sbjct: 712 LPYRAE---VGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFAFGLLP-- 766
Query: 208 DGVDNLAHIGGFASGVLLGFILFLRPQYG 236
+DN AHI GF SG+ L F +G
Sbjct: 767 -WIDNFAHISGFVSGLFLSFAFLPYISFG 794
>sp|A9L8T6|RHDF1_PAPAN Inactive rhomboid protein 1 OS=Papio anubis GN=RHBDF1 PE=3 SV=1
Length = 855
Score = 96.3 bits (238), Expect = 2e-19, Method: Composition-based stats.
Identities = 57/149 (38%), Positives = 82/149 (55%), Gaps = 6/149 (4%)
Query: 88 NQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLH 147
+Q YRL S++LHAGI+H +V++ M V LE+ G+ RIA +YLLSG G+L S +
Sbjct: 651 DQFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIF 710
Query: 148 HKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGV 207
+ E VG +G+ FG+L + EL +W I A + L +V+ FG +P
Sbjct: 711 LPYRAE---VGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLP-- 765
Query: 208 DGVDNLAHIGGFASGVLLGFILFLRPQYG 236
+DN AHI GF SG+ L F +G
Sbjct: 766 -WIDNFAHISGFISGLFLSFAFLPYISFG 793
>sp|Q96CC6|RHDF1_HUMAN Inactive rhomboid protein 1 OS=Homo sapiens GN=RHBDF1 PE=1 SV=2
Length = 855
Score = 96.3 bits (238), Expect = 2e-19, Method: Composition-based stats.
Identities = 57/149 (38%), Positives = 82/149 (55%), Gaps = 6/149 (4%)
Query: 88 NQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLH 147
+Q YRL S++LHAGI+H +V++ M V LE+ G+ RIA +YLLSG G+L S +
Sbjct: 651 DQFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIF 710
Query: 148 HKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGV 207
+ E VG +G+ FG+L + EL +W I A + L +V+ FG +P
Sbjct: 711 LPYRAE---VGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLP-- 765
Query: 208 DGVDNLAHIGGFASGVLLGFILFLRPQYG 236
+DN AHI GF SG+ L F +G
Sbjct: 766 -WIDNFAHISGFISGLFLSFAFLPYISFG 793
>sp|B1MT31|RHDF1_CALMO Inactive rhomboid protein 1 OS=Callicebus moloch GN=RHBDF1 PE=3
SV=1
Length = 855
Score = 96.3 bits (238), Expect = 2e-19, Method: Composition-based stats.
Identities = 57/149 (38%), Positives = 82/149 (55%), Gaps = 6/149 (4%)
Query: 88 NQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLH 147
+Q YRL S++LHAGI+H +V++ M V LE+ G+ RIA +YLLSG G+L S +
Sbjct: 651 DQFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIF 710
Query: 148 HKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGV 207
+ E VG +G+ FG+L + EL +W I A + L +V+ FG +P
Sbjct: 711 LPYRAE---VGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLP-- 765
Query: 208 DGVDNLAHIGGFASGVLLGFILFLRPQYG 236
+DN AHI GF SG+ L F +G
Sbjct: 766 -WIDNFAHISGFISGLFLSFAFLPYISFG 793
>sp|B0VX73|RHDF1_CALJA Inactive rhomboid protein 1 OS=Callithrix jacchus GN=RHBDF1 PE=3
SV=1
Length = 855
Score = 96.3 bits (238), Expect = 2e-19, Method: Composition-based stats.
Identities = 57/149 (38%), Positives = 82/149 (55%), Gaps = 6/149 (4%)
Query: 88 NQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLH 147
+Q YRL S++LHAGI+H +V++ M V LE+ G+ RIA +YLLSG G+L S +
Sbjct: 651 DQFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIF 710
Query: 148 HKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGV 207
+ E VG +G+ FG+L + EL +W I A + L +V+ FG +P
Sbjct: 711 LPYRAE---VGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLP-- 765
Query: 208 DGVDNLAHIGGFASGVLLGFILFLRPQYG 236
+DN AHI GF SG+ L F +G
Sbjct: 766 -WIDNFAHISGFISGLFLSFAFLPYISFG 793
>sp|A7YWH9|RHDF1_BOVIN Inactive rhomboid protein 1 OS=Bos taurus GN=RHBDF1 PE=2 SV=1
Length = 856
Score = 95.9 bits (237), Expect = 3e-19, Method: Composition-based stats.
Identities = 64/184 (34%), Positives = 94/184 (51%), Gaps = 24/184 (13%)
Query: 88 NQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLH 147
+Q YRL S++LHAG++H +V++ M V LE+ G+ RIA +YLLSG G+L S +
Sbjct: 652 DQFYRLWLSLFLHAGVLHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIF 711
Query: 148 HKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGV 207
+ E VG +G+ FG+L + EL +W I A + L +V+ FG +P
Sbjct: 712 LPYRAE---VGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLP-- 766
Query: 208 DGVDNLAHIGGFASGVLLGFILFLRPQYGYVSEKYIAAGYDAKHRQPKYMHYQQLCWIIA 267
+DN AHI GF SG+ L F YI+ G K+ Y++ C II
Sbjct: 767 -WIDNFAHISGFISGLFLSFAFL----------PYISFG--------KFDLYRKRCQIIV 807
Query: 268 LILL 271
L+
Sbjct: 808 FQLV 811
>sp|Q6GMF8|RHDF1_DANRE Inactive rhomboid protein 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1
Length = 857
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 97/187 (51%), Gaps = 24/187 (12%)
Query: 88 NQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLH 147
+Q YRL S++LHAGI+H +V++ M + LE+ G+ RI+ +Y+LSG G+L S +
Sbjct: 653 DQFYRLWLSLFLHAGILHCLVSVCFQMTILRDLEKLAGWLRISIIYILSGITGNLASAIF 712
Query: 148 HKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGV 207
+ E VG +G+ FG+L + ELI +W I A + + L V+ AFG +P
Sbjct: 713 LPYRAE---VGPAGSQFGILACLFVELIQSWQILAQPWRAFTKLLCVVLFLFAFGLLP-- 767
Query: 208 DGVDNLAHIGGFASGVLLGFILFLRPQYGYVSEKYIAAGYDAKHRQPKYMHYQQLCWIIA 267
+DN AHI GF SG L F YI+ G + Y++ C II
Sbjct: 768 -WIDNFAHISGFISGFFLSFAFL----------PYISFG--------RLDMYRKRCQIII 808
Query: 268 LILLVLG 274
+++ LG
Sbjct: 809 FLVVFLG 815
>sp|Q695T8|RHBL4_TOXGO Rhomboid-like protease 4 OS=Toxoplasma gondii GN=ROM4 PE=2 SV=1
Length = 641
Score = 87.8 bits (216), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 91/163 (55%), Gaps = 13/163 (7%)
Query: 68 PSISTLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFA 127
P+ LR LGGL+ N I ++ +RL +SM++H G +H+++N++ + + + +E ++GF
Sbjct: 320 PNARVLRHLGGLETNYIREYSETFRLFTSMYMHGGWLHILINLSCQIQILWIIEPDWGFL 379
Query: 128 RIAPLYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTS 187
R L+ L G G+LLS + ++VG+SG+++ LLG ++ + W S
Sbjct: 380 RTTLLFFLGGISGNLLSAVADPCS---ITVGSSGSMYALLGALIPYCVEYW-------KS 429
Query: 188 LSVLGSVIALNLA--FGFIPGVDG-VDNLAHIGGFASGVLLGF 227
+ G ++ + G + G+ G DN AH+GG G+L GF
Sbjct: 430 IPRPGCILVFMIVVIIGILTGMAGFTDNYAHMGGALGGILWGF 472
>sp|Q6GV23|RHBL5_TOXGO Rhomboid-like protease 5 OS=Toxoplasma gondii GN=ROM5 PE=1 SV=1
Length = 841
Score = 85.5 bits (210), Expect = 4e-16, Method: Composition-based stats.
Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 4/148 (2%)
Query: 68 PSISTLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFA 127
P+ LG LD N + + +R++ M+LH G +HL++N++ + LE +GF
Sbjct: 442 PNPRVFSSLGALDTNKVRNYGEMFRVVWGMFLHGGWMHLLLNVSCQAQTLWILEPAWGFL 501
Query: 128 RIAPLYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTS 187
R L+++ G GSLLS + + V+VG+SGA +GLLG ++ I W A+
Sbjct: 502 RTLSLWIVGGVSGSLLSAVANPCT---VTVGSSGAFYGLLGALVPFSIEYWDHIASPAWF 558
Query: 188 LSVLGSVIALNLAFGFIPGVDGVDNLAH 215
L + SV+ + FG + GV GVDN AH
Sbjct: 559 LFCV-SVLVMVAQFGNMVGVQGVDNNAH 585
>sp|Q00M95|RHDF2_CANFA Inactive rhomboid protein 2 OS=Canis familiaris GN=RHBDF2 PE=2 SV=1
Length = 827
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 7/155 (4%)
Query: 88 NQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLH 147
+Q YRL S++LHAG++H +V++ M + LE+ G+ RIA +++LSG G+L S +
Sbjct: 623 DQFYRLWLSLFLHAGVVHCLVSVVFQMTILRDLEKLAGWHRIAIIFILSGITGNLASAIF 682
Query: 148 HKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGV 207
+ E VG +G+ FGLL + EL +W + + L +++ G +P
Sbjct: 683 LPYRAE---VGPAGSQFGLLACLFVELFQSWQLLERPWKAFLNLSAIVLFLFICGLLP-- 737
Query: 208 DGVDNLAHIGGFASGVLLGFILFLRPQYGYVSEKY 242
+DN+AHI GF SG+LL F +G S+KY
Sbjct: 738 -WIDNIAHIFGFLSGLLLAFAFLPYITFG-TSDKY 770
>sp|Q6PJF5|RHDF2_HUMAN Inactive rhomboid protein 2 OS=Homo sapiens GN=RHBDF2 PE=1 SV=2
Length = 856
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 7/155 (4%)
Query: 88 NQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLH 147
+Q YRL S++LHAG++H +V++ M + LE+ G+ RIA +++LSG G+L S +
Sbjct: 652 DQFYRLWLSLFLHAGVVHCLVSVVFQMTILRDLEKLAGWHRIAIIFILSGITGNLASAIF 711
Query: 148 HKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGV 207
+ E VG +G+ FGLL + EL +W + + L +++ G +P
Sbjct: 712 LPYRAE---VGPAGSQFGLLACLFVELFQSWPLLERPWKAFLNLSAIVLFLFICGLLP-- 766
Query: 208 DGVDNLAHIGGFASGVLLGFILFLRPQYGYVSEKY 242
+DN+AHI GF SG+LL F +G S+KY
Sbjct: 767 -WIDNIAHIFGFLSGLLLAFAFLPYITFG-TSDKY 799
>sp|A0JPA1|RHDF2_XENTR Inactive rhomboid protein 2 OS=Xenopus tropicalis GN=rhbdf2 PE=2
SV=1
Length = 826
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 80/140 (57%), Gaps = 6/140 (4%)
Query: 88 NQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLH 147
+Q YRL S++LHAG+IH V++ M V LE+ G+ RI+ +Y+LSG G+L S L
Sbjct: 622 DQFYRLWLSLFLHAGVIHCCVSVVFQMTVLRDLEKLAGWLRISIIYILSGITGNLASALF 681
Query: 148 HKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGV 207
+ E VG +G+ FGLL + EL +W I A + L ++ FG +P
Sbjct: 682 LPYRAE---VGPAGSQFGLLACLFVELFQSWQILAKPWKAFLKLLGIVLFLFLFGLLP-- 736
Query: 208 DGVDNLAHIGGFASGVLLGF 227
+DN+AHI GF SG+LL F
Sbjct: 737 -WIDNIAHIFGFLSGLLLSF 755
>sp|C8VCL5|Y0929_EMENI Uncharacterized rhomboid protein AN10929 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=AN10929 PE=3 SV=1
Length = 503
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 27/227 (11%)
Query: 36 CPAKTADSHQCVLRDILGRYSFQPWKENYLLGPSISTLRDLGGLDRNLIVRKNQKYRLLS 95
CP T C L ++ G F + G LD +Q +R +
Sbjct: 212 CPNATTTDSDCSLSELCG---FD----------GVPNPHPGGSLDDK--PAPDQWFRFII 256
Query: 96 SMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLHHKGKKEIV 155
M+LH+G +H+ N+ M + +E+ G+ R +YL SG G +L ++ G+ E
Sbjct: 257 PMFLHSGFVHIGFNLLVQMTMGADMERMIGWWRYGLVYLSSGIWGFVLGG-NYAGQGE-A 314
Query: 156 SVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGVDGVDNLAH 215
S G SGALFG+L + +L+ W N L ++ IA++ G +P G+DN +H
Sbjct: 315 SCGCSGALFGILALFVLDLLYGWNDRQNPWVELIIMVLGIAVSFVLGLLP---GLDNFSH 371
Query: 216 IGGFASGVLLGFILF-----LRPQYGYVSEKYIA--AGYDAKHRQPK 255
+GGF G+ LG + LR + G Y+A G A++ P
Sbjct: 372 LGGFTMGLALGLCVMRSPNALRERIGLARSPYVAMSGGVAAENADPD 418
>sp|Q80WQ6|RHDF2_MOUSE Inactive rhomboid protein 2 OS=Mus musculus GN=Rhbdf2 PE=1 SV=1
Length = 827
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 86/155 (55%), Gaps = 7/155 (4%)
Query: 88 NQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLH 147
+Q YR+ S++LHAGI+H +V++ M + LE+ G+ RI+ +++LSG G+L S +
Sbjct: 623 DQFYRIWLSLFLHAGIVHCLVSVVFQMTILRDLEKLAGWHRISIIFILSGITGNLASAIF 682
Query: 148 HKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGV 207
+ E VG +G+ FGLL + EL +W + + L +++ G +P
Sbjct: 683 LPYRAE---VGPAGSQFGLLACLFVELFQSWQLLERPWKAFFNLSAIVLFLFICGLLP-- 737
Query: 208 DGVDNLAHIGGFASGVLLGFILFLRPQYGYVSEKY 242
+DN+AHI GF SG+LL F +G S+KY
Sbjct: 738 -WIDNIAHIFGFLSGMLLAFAFLPYITFG-TSDKY 770
>sp|Q6IUY1|RHBL3_TOXGO Rhomboid-like protease 3 OS=Toxoplasma gondii GN=ROM3 PE=2 SV=1
Length = 263
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 76/137 (55%), Gaps = 4/137 (2%)
Query: 89 QKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLHH 148
Q +R+++ ++LHA I+HLV+N+ ++ +S RLE+ +G + Y LS G+LLS L
Sbjct: 82 QLWRVVTPLFLHATILHLVLNLVFILHISLRLEERYGTKKFLVTYFLSAIVGNLLSMLMQ 141
Query: 149 KGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGVD 208
+SVGAS A FG++G M +E+ W + + + + I L + F+
Sbjct: 142 PWA---LSVGASTAGFGIIGGMAAEVSVVWCKLSEELKRIYSMDICILAVLIY-FLSFGR 197
Query: 209 GVDNLAHIGGFASGVLL 225
VD H+GGF +GV L
Sbjct: 198 TVDTFGHLGGFLAGVAL 214
>sp|P54493|GLUP_BACSU Rhomboid protease GluP OS=Bacillus subtilis (strain 168) GN=gluP
PE=1 SV=2
Length = 507
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 85/168 (50%), Gaps = 9/168 (5%)
Query: 78 GLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSG 137
G N ++ + + +RLL+ + LH GI HL N +L V +E+ +G R +YL +G
Sbjct: 210 GAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLLIYLAAG 269
Query: 138 FGGSLLSCLHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIAL 197
GS+ S + S GASGA+FG LG +L ++N ++ + + +I +
Sbjct: 270 ITGSIASFVFSP----YPSAGASGAIFGCLGALLYVALSNRKMFLRTIGTNII--VIIII 323
Query: 198 NLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQYGYVSEKYIAA 245
NL FGF V +DN HIGG G L L P+ G ++ ++A
Sbjct: 324 NLGFGF--AVSNIDNSGHIGGLIGGFFAAAALGL-PKAGAFGKRLLSA 368
>sp|Q19821|ROM1_CAEEL Rhomboid-related protein 1 OS=Caenorhabditis elegans GN=rom-1 PE=3
SV=2
Length = 356
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 12/150 (8%)
Query: 87 KNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCL 146
+ + +R S M+LHAG+ HL+ N+ +LV LE RI P+YLL+ GSL L
Sbjct: 163 RGEAWRFTSYMFLHAGLNHLLGNVIIQLLVGIPLEVAHKIWRIGPIYLLAVTSGSL---L 219
Query: 147 HHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFG---- 202
+ + VGAS ++ L+ ++ +I NW + + VL + + L FG
Sbjct: 220 QYAIDPNSLLVGASAGVYALIFAHVANVILNW--HEMPLRWIRVLVLFVFIFLDFGGAIH 277
Query: 203 ---FIPGVDGVDNLAHIGGFASGVLLGFIL 229
+ D V +LAHI G +G+ G+++
Sbjct: 278 RRFYTNDCDSVSHLAHIAGAVTGLFFGYVV 307
>sp|P20350|RHOM_DROME Protein rhomboid OS=Drosophila melanogaster GN=rho PE=1 SV=2
Length = 355
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 91/195 (46%), Gaps = 39/195 (20%)
Query: 86 RKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSC 145
R+ Q +R S M+LHA HL N+ + LE G ARI +Y+ F GSL +
Sbjct: 146 RRLQVWRFFSYMFLHANWFHLGFNIVIQLFFGIPLEVMHGTARIGVIYMAGVFAGSLGTS 205
Query: 146 LHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSV---IALNLAFG 202
+ E+ VGASG ++ LL L+ + N YA+ ++ + LGSV ++ +L +
Sbjct: 206 V---VDSEVFLVGASGGVYALLAAHLANITLN---YAHMKSASTQLGSVVIFVSCDLGYA 259
Query: 203 -FIPGVDG--------VDNLAHIGGFASGVLLGFILFLRPQYGYVSEKYIAAGYDAKHRQ 253
+ DG V +AH+ G +G+ +GF++ +G HR+
Sbjct: 260 LYTQYFDGSAFAKGPQVSYIAHLTGALAGLTIGFLVL--KNFG--------------HRE 303
Query: 254 PKYMHYQQLCWIIAL 268
Y+QL W +AL
Sbjct: 304 -----YEQLIWWLAL 313
>sp|P96617|YDCA_BACSU Putative rhomboid protease YdcA OS=Bacillus subtilis (strain 168)
GN=ydcA PE=3 SV=1
Length = 199
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 6/156 (3%)
Query: 82 NLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGS 141
NL V + +RL++ + LHAG HL+ N S+ L + LE+ G AR +Y SG G+
Sbjct: 50 NLGVANGEWWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGN 109
Query: 142 LLSCLHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAF 201
+ + + + V VGASGA+FGL G L ++ + + + + + +++A +
Sbjct: 110 IGTYVTE--PLDYVHVGASGAIFGLFGVYLFMVLFRNELIGQEHSKMII--TLLAFAVLM 165
Query: 202 GFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQYGY 237
FI ++ +AH+ G G LL F+ + + Y
Sbjct: 166 SFIN--SNINMMAHLFGLCGGFLLSFLCVQKKERRY 199
>sp|P58872|RHBL3_HUMAN Rhomboid-related protein 3 OS=Homo sapiens GN=RHBDL3 PE=2 SV=1
Length = 404
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 13/153 (8%)
Query: 87 KNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCL 146
+ Q +R L+ +++HAGI HL +N+ +LV LE G RI +Y+ GSL +
Sbjct: 208 RAQVWRYLTYIFMHAGIEHLGLNVVLQLLVGVPLEMVHGATRIGLVYVAGVVAGSLAVSV 267
Query: 147 HHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFI-- 204
VG+SG ++ L+ L+ ++ NW+ + L + ++I +++ FG
Sbjct: 268 ---ADMTAPVVGSSGGVYALVSAHLANIVMNWSGMKCQFKLLRMAVALICMSMEFGRAVW 324
Query: 205 --------PGVDGVDNLAHIGGFASGVLLGFIL 229
P +AH+GG A G+ LG ++
Sbjct: 325 LRFHPSAYPPCPHPSFVAHLGGVAVGITLGVVV 357
>sp|Q76NQ1|RHDF1_DROME Inactive rhomboid protein 1 OS=Drosophila melanogaster GN=rho-5 PE=2
SV=1
Length = 1429
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
Query: 60 WKENYLLGPSISTLRDLGGLDRNLIVR-KNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSY 118
+ E L IS L ++ G+ + V +Q YRLL+S+ +HAGI+HL + + L
Sbjct: 1062 FHEEASLCSQISCLNNVCGMFPFISVETPDQLYRLLTSLCMHAGILHLAITLIFQHLFLA 1121
Query: 119 RLEQEFGFARIAPLYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGLLGTMLSELI 175
LE+ G R A +Y++SGF G+L S + + E VG S +L G++ ++++ L+
Sbjct: 1122 DLERLIGTVRTAIVYIMSGFAGNLTSAILVPHRPE---VGPSASLSGVVASLIALLV 1175
>sp|Q695U0|RHBL1_TOXGO Rhomboid-like protease 1 OS=Toxoplasma gondii GN=ROM1 PE=2 SV=1
Length = 293
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 71/145 (48%), Gaps = 2/145 (1%)
Query: 84 IVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLL 143
++++ Q +RLL ++LHA H+ N+ + + + +E+ +G + LY S G+LL
Sbjct: 103 LIKQGQVWRLLLPVFLHANFFHVFFNVFFQLRMGFTIERRYGLLKFTGLYFASAIYGNLL 162
Query: 144 SCLHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGF 203
S + VGAS A FGL+G + E+ W ++ L+ + S + L + F
Sbjct: 163 SATAFFCNS--LKVGASTAGFGLIGIQICEMALTWHRMRHRDRMLTNMVSFVLLMVLLMF 220
Query: 204 IPGVDGVDNLAHIGGFASGVLLGFI 228
+D + H+GG G +G +
Sbjct: 221 TLNGGSIDQMGHLGGLLCGFSIGML 245
>sp|P58873|RHBL3_MOUSE Rhomboid-related protein 3 OS=Mus musculus GN=Rhbdl3 PE=2 SV=1
Length = 404
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 13/154 (8%)
Query: 87 KNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCL 146
+ Q +R ++ +++HAG+ L +N+ +LV LE G RI +Y+ GSL +
Sbjct: 208 RAQAWRYVTYIFMHAGVEQLGLNVALQLLVGVPLEMVHGATRIGLVYVAGVVAGSLAVSV 267
Query: 147 HHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFI-- 204
VG+SG ++ L+ L+ ++ NW+ + L + ++I +++ FG
Sbjct: 268 ---ADMTAPVVGSSGGVYALVSAHLANIVMNWSGMKCQFKLLRMAVALICMSMEFGRAVW 324
Query: 205 --------PGVDGVDNLAHIGGFASGVLLGFILF 230
P +AH+GG A G+ LG ++
Sbjct: 325 LRFHPSAYPPCPHPSFVAHLGGVAVGITLGVVVL 358
>sp|A2AGA4|RHBL2_MOUSE Rhomboid-related protein 2 OS=Mus musculus GN=Rhbdl2 PE=1 SV=1
Length = 302
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Query: 86 RKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSC 145
++ + +R +S M +HAG+ H+V N+ +++ LE R+ +YL GSL S
Sbjct: 115 KREEAWRFISYMLVHAGVQHIVGNLLMQIVLGIPLEMVHKGLRVGLVYLAGVLAGSLASS 174
Query: 146 LHHKGKKEIVSVGASGALFGLLGTMLSELIANW--TIYANKCTSLSVLGSVIALNLAFG- 202
+ K VGASG ++ L+G +I N+ I A L V+ ++A ++ F
Sbjct: 175 IFDPLKS---LVGASGGVYALMGGYFMNVIVNFREMIPAFGIVRLLVIILIVASDMGFAL 231
Query: 203 ----FIPGVDG-VDNLAHIGGFASGVLLGFILF 230
F+P V AHI G +G+ +G+ +F
Sbjct: 232 YRRFFVPANGSPVSFAAHIAGGFAGMSIGYTVF 264
>sp|Q695T9|RHBL2_TOXGO Rhomboid-like protease 2 OS=Toxoplasma gondii GN=ROM2 PE=2 SV=1
Length = 283
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 89/183 (48%), Gaps = 22/183 (12%)
Query: 63 NYLLGPSISTLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQ 122
N +L P+ TL G LI R + +RL+ ++LH + H+++N+ + + +E+
Sbjct: 84 NEILAPTPQTLVMFGANIPELI-RVGEIWRLICPLFLHLNLFHILMNLWVQIRIGLTMEE 142
Query: 123 EFGFARIAPLYLLSGFGGSLLS-----CLHHKGKKEIVSVGASGALFGLLGTMLSELIAN 177
++G+ + +Y G +++S C K GAS A+F L+G L+EL
Sbjct: 143 KYGWKMLLAVYFGVGVLANMISAAVLFCGQMKA-------GASTAVFALIGVQLAELALI 195
Query: 178 WTIYANKCTSLSVLGSVIALNLAFGFIPGVDG-VDNLAHIG----GFASGVLLGFILFLR 232
W ++ +++ + + L F F+ +D++ HIG GFA+G+ L ++
Sbjct: 196 WHAIQDRNSAI----ISVCICLFFVFVSSFGSHMDSVGHIGGLVMGFAAGIWLNENSDIK 251
Query: 233 PQY 235
P +
Sbjct: 252 PTW 254
>sp|P34356|ROM2_CAEEL Rhomboid-related protein 2 OS=Caenorhabditis elegans GN=rom-2 PE=3
SV=2
Length = 435
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 9/147 (6%)
Query: 89 QKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLHH 148
+ +RL + ++ GI H++ N+ + + LE + RI LY + GS+LS
Sbjct: 168 ELWRLFTYCLINVGIFHIIFNILIQLAIGVPLELVHRW-RIYILYFMGVLFGSILSL--- 223
Query: 149 KGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFG-----F 203
+ G + F L+ + ++ + N+ N L +L AL+ F
Sbjct: 224 ALDPTVFLCGGAAGSFSLIASHITTIATNFKEMENATCRLPILIVFAALDYVLAVYQRFF 283
Query: 204 IPGVDGVDNLAHIGGFASGVLLGFILF 230
P +D V H+GG +G+L FILF
Sbjct: 284 APRIDKVSMYGHLGGLVAGILFTFILF 310
>sp|P46116|AARA_PROST Rhomboid protease AarA OS=Providencia stuartii GN=aarA PE=1 SV=1
Length = 281
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 70/159 (44%), Gaps = 23/159 (14%)
Query: 96 SMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSC---LHHKGKK 152
SM LH+ HL N +L ++ E+ +G ++ +Y++SG G +L S +
Sbjct: 74 SMMLHSNGTHLAFNCLALFVIGIGCERAYGKFKLLAIYIISGIGAALFSAYWQYYEISNS 133
Query: 153 EI---------VSVGASGALFGLLGTMLSELIA--------NWTIYANKCTSLSVLGSVI 195
++ + VGASGA+ G+ + LI + I + L L ++I
Sbjct: 134 DLWTDSTVYITIGVGASGAIMGIAAASVIYLIKVVINKPNPHPVIQRRQKYQLYNLIAMI 193
Query: 196 ALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQ 234
AL L G GVDN AHIGG G L+ L P
Sbjct: 194 ALTLINGL---QSGVDNAAHIGGAIIGALISIAYILVPH 229
>sp|Q9NX52|RHBL2_HUMAN Rhomboid-related protein 2 OS=Homo sapiens GN=RHBDL2 PE=1 SV=2
Length = 303
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 75 DLGGLDRNLIV---RKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAP 131
D G L+ I ++ + +R +S M +HAG+ H++ N+ +++ LE R+
Sbjct: 102 DTGILESPFIYSPEKREEAWRFISYMLVHAGVQHILGNLCMQLVLGIPLEMVHKGLRVGL 161
Query: 132 LYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGLLGTMLSELIANWT--IYANKCTSLS 189
+YL GSL S + + VGASG ++ L+G ++ N+ I A L
Sbjct: 162 VYLAGVIAGSLASSIFDPLR---YLVGASGGVYALMGGYFMNVLVNFQEMIPAFGIFRLL 218
Query: 190 VLGSVIALNLAFG-----FIPGVDG--VDNLAHIGGFASGVLLGFILF 230
++ +I L++ F F+P DG V AHI G +G+ +G+ +F
Sbjct: 219 IIILIIVLDMGFALYRRFFVPE-DGSPVSFAAHIAGGFAGMSIGYTVF 265
>sp|O75783|RHBL1_HUMAN Rhomboid-related protein 1 OS=Homo sapiens GN=RHBDL1 PE=2 SV=1
Length = 438
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 68/168 (40%), Gaps = 21/168 (12%)
Query: 87 KNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCL 146
+ + +R L+ M++H G+ L N +++ LE G RI+ LYL GSL +
Sbjct: 242 RARAWRFLTYMFMHVGLEQLGFNALLQLMIGVPLEMVHGLLRISLLYLAGVLAGSLTVSI 301
Query: 147 HHKGKKEIVSVGASGALFGLLGTMLSELIANWT-----------IYANKCTSLSVLGSVI 195
VG SG ++ L L+ ++ NW + A C S S +G +
Sbjct: 302 T---DMRAPVVGGSGGVYALCSAHLANVVMNWAGMRCPYKLLRMVLALVCMS-SEVGRAV 357
Query: 196 ALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILF------LRPQYGY 237
L + +AH+ G GV +G + LR Q G+
Sbjct: 358 WLRFSPPLPASGPQPSFMAHLAGAVVGVSMGLTILRSYEERLRDQCGW 405
>sp|Q8VC82|RHBL1_MOUSE Rhomboid-related protein 1 OS=Mus musculus GN=Rhbdl1 PE=2 SV=1
Length = 373
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 68/168 (40%), Gaps = 21/168 (12%)
Query: 87 KNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCL 146
+ + +R L+ M++H G+ L N +++ LE G RI+ LYL GSL +
Sbjct: 177 RARAWRFLTYMFMHVGLEQLGFNALLQLMIGVPLEMVHGVLRISLLYLAGVLAGSLTVSI 236
Query: 147 HHKGKKEIVSVGASGALFGLLGTMLSELIANWT-----------IYANKCTSLSVLGSVI 195
VG SG ++ L L+ ++ NW + A C S S +G +
Sbjct: 237 ---TDMRAPVVGGSGGVYALCSAHLANVVMNWAGMRCPYKLLRMVLALVCMS-SEVGRAV 292
Query: 196 ALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILF------LRPQYGY 237
L + +AH+ G GV +G + LR Q G+
Sbjct: 293 WLRFSPPLPASGPQPSFMAHLAGAVVGVSMGLTILRSYEERLRDQCGW 340
>sp|P53259|PCP1_YEAST Rhomboid protein 1, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PCP1 PE=1 SV=1
Length = 346
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 79 LDRNLIVRKN---QKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLL 135
L + ++++K+ K ++ S + H HL +NM +L L G + LY+
Sbjct: 169 LQKYMLLQKDYVTSKISIIGSAFSHQEFWHLGMNMLALWSFGTSLATMLGASNFFSLYMN 228
Query: 136 SGFGGSLLSCLHHK-GKKEIV--SVGASGALFGLLG 168
S GSL S + K + IV S+GASGALFG+LG
Sbjct: 229 SAIAGSLFSLWYPKLARLAIVGPSLGASGALFGVLG 264
>sp|Q58EK4|PARL_DANRE Presenilins-associated rhomboid-like protein, mitochondrial
OS=Danio rerio GN=parl PE=2 SV=1
Length = 383
Score = 37.7 bits (86), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 6/129 (4%)
Query: 100 HAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLHHKGKKEI-VSVG 158
H +IH+VVNM L S + G + LYL G + +S + + S+G
Sbjct: 217 HYSVIHMVVNMYVLWTFSSSIVSLLGREQFLALYLSGGVISTFVSYVFKTATGRLGPSLG 276
Query: 159 ASGALFGLLGTMLSEL-IANWTIYANKCTSLS---VLGSVIALNLAFGFIPGVDGVDNLA 214
ASG++ +L + +++ A I S S L +++AL++A G + G D+ A
Sbjct: 277 ASGSIMTVLAAVCTKIPEAKLGIVLLPVISFSAGNALKALVALDIA-GLVLGWRFFDHAA 335
Query: 215 HIGGFASGV 223
H+GG GV
Sbjct: 336 HLGGALFGV 344
>sp|Q5UQ86|RHBDL_MIMIV Putative rhomboid protein L523 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L523 PE=3 SV=1
Length = 171
Score = 35.0 bits (79), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 19/145 (13%)
Query: 82 NLIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGS 141
N ++ L + HA + HL+ N S ++S+ LE G A+ A + S
Sbjct: 21 NFFNTNSEIINYLIRTFYHANLQHLLANSFSFYMLSF-LEDVMGHAKFAFCIIFIWILSS 79
Query: 142 LLSCLHHKG--KKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNL 199
+L H +++ +VG SG +FGL+ L L K LS+ G V+++
Sbjct: 80 MLLLAEHTAFPSRKVYTVGFSGVIFGLIVVYLMSL--------GKNRGLSIAGLVLSI-- 129
Query: 200 AFGFIPG--VDGVDNLAHIGGFASG 222
IP V G+ HI G +G
Sbjct: 130 ----IPQFFVSGISYEGHICGMIAG 150
>sp|P44783|GLPG_HAEIN Rhomboid protease GlpG OS=Haemophilus influenzae (strain ATCC 51907
/ DSM 11121 / KW20 / Rd) GN=glpG PE=1 SV=1
Length = 192
Score = 35.0 bits (79), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 68/145 (46%), Gaps = 10/145 (6%)
Query: 86 RKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSC 145
+ ++ +R +S +H +H++ N++ + +E+ FG ++ LY+++ S ++
Sbjct: 46 QDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVA----SAITG 101
Query: 146 LHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIP 205
G SG ++ +LG + N ++ ++L + +A GFI
Sbjct: 102 YVQNYVSGPAFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTML----LVGIALGFIS 157
Query: 206 GVDGVD--NLAHIGGFASGVLLGFI 228
+ GV+ N AHI G G++ GFI
Sbjct: 158 PLFGVEMGNAAHISGLIVGLIWGFI 182
>sp|Q5XJY4|PARL_MOUSE Presenilins-associated rhomboid-like protein, mitochondrial OS=Mus
musculus GN=Parl PE=1 SV=1
Length = 377
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 8/137 (5%)
Query: 93 LLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLS--CLHHKG 150
+L S + H + H+ NM L S + G + +YL +G + +S C G
Sbjct: 207 MLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQFVAVYLSAGVISNFVSYVCKVATG 266
Query: 151 KKEIVSVGASGALFGLLGTMLSEL----IANWTIYANKCTSLSVLGSVIALNLAFGFIPG 206
+ S+GASGA+ +L + +++ +A + T+ + L ++IA++ A G I G
Sbjct: 267 RYG-PSLGASGAIMTVLAAVCTKIPEGRLAIIFLPVFTFTAGNALKAIIAMDTA-GMILG 324
Query: 207 VDGVDNLAHIGGFASGV 223
D+ AH+GG G+
Sbjct: 325 WKFFDHAAHLGGALFGI 341
>sp|Q3B8P0|PARL_RAT Presenilins-associated rhomboid-like protein, mitochondrial
OS=Rattus norvegicus GN=Parl PE=2 SV=1
Length = 377
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 8/137 (5%)
Query: 93 LLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLS--CLHHKG 150
+L S + H + H+ NM L S + G + +YL +G + +S C G
Sbjct: 207 MLLSTFSHFSLFHMAANMYVLWSFSTSIVNILGQEQFVAVYLSAGVISNFVSYVCKVATG 266
Query: 151 KKEIVSVGASGALFGLLGTMLSEL----IANWTIYANKCTSLSVLGSVIALNLAFGFIPG 206
+ S+GASGA+ +L + +++ +A + T+ + L ++IA++ A G I G
Sbjct: 267 RYG-PSLGASGAIMTVLAAVCTKIPEGRLAIIFLPVFTFTAGNALKAIIAMDTA-GMILG 324
Query: 207 VDGVDNLAHIGGFASGV 223
D+ AH+GG G+
Sbjct: 325 WKFFDHAAHLGGALFGI 341
>sp|Q2KHV4|PARL_BOVIN Presenilins-associated rhomboid-like protein, mitochondrial OS=Bos
taurus GN=PARL PE=2 SV=1
Length = 377
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 8/137 (5%)
Query: 93 LLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLS--CLHHKG 150
+L S + H + H+ NM L S + G + +YL +G + +S C G
Sbjct: 207 MLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQFMAVYLSAGVISTFVSYVCKVATG 266
Query: 151 KKEIVSVGASGALFGLLGTMLSEL----IANWTIYANKCTSLSVLGSVIALNLAFGFIPG 206
+ S+GASGA+ +L + +++ +A + T+ + L ++IA++ A G I G
Sbjct: 267 RYG-PSLGASGAIMTVLAAVCTKIPEGRLAIIFLPMFTFTAGNALKAIIAMDTA-GMILG 324
Query: 207 VDGVDNLAHIGGFASGV 223
D+ AH+GG G+
Sbjct: 325 WKFFDHAAHLGGALFGI 341
>sp|O88779|RHBL1_RAT Rhomboid-related protein 1 (Fragment) OS=Rattus norvegicus
GN=Rhbdl1 PE=2 SV=1
Length = 164
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 61/157 (38%), Gaps = 21/157 (13%)
Query: 98 WLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLHHKGKKEIVSV 157
++H G+ L N +++ LE G RI+ LYL GSL + V
Sbjct: 1 FMHVGLEQLGFNALLQLMIGVPLEMVHGVLRISLLYLAGVLAGSLTVSIT---DMRAPVV 57
Query: 158 GASGALFGLLGTMLSELIANWT-----------IYANKCTSLSVLGSVIALNLAFGFIPG 206
G SG ++ L L+ ++ NW + A C S S +G + L +
Sbjct: 58 GGSGGVYALCSAHLANVVMNWAGMRCPYKLLRMVLALVCMS-SEVGRAVWLRFSPPLPAS 116
Query: 207 VDGVDNLAHIGGFASGVLLGFILF------LRPQYGY 237
+AH+ G GV +G + LR Q G+
Sbjct: 117 GPQPSFMAHLAGAVVGVSMGLTILRSYEERLRDQCGW 153
>sp|Q9NR64|KLHL1_HUMAN Kelch-like protein 1 OS=Homo sapiens GN=KLHL1 PE=2 SV=1
Length = 748
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 48/197 (24%)
Query: 54 RYSFQPWKENYLLGP-------SISTLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHL 106
+Y P + + P ++ TL +GG+D N +KY L +++W+ AG
Sbjct: 435 KYHLLPERRTLMQSPRTKPRKSTVGTLYAVGGMDNNKGATTIEKYDLRTNLWIQAG---- 490
Query: 107 VVNMTSLMLVSYRLEQEFGFARIAP-LYLLSGFGG----SLLSCLHHKGKKEIVSVGASG 161
M+ RL +FG A I L+++ G G + + C + K K V S
Sbjct: 491 -------MMNGRRL--QFGVAVIDDKLFVIGGRDGLKTLNTVECYNPKTKTWTVLPPMST 541
Query: 162 ALFGLLGTMLSELI----------------------ANWTIYANKCTSLSVLGSVIALNL 199
GL T+L I WT A+ + S +G V ALN
Sbjct: 542 HRHGLGVTVLEGPIYAVGGHDGWSYLNTVERWDPQSQQWTFVASMSIARSTVG-VAALNG 600
Query: 200 AFGFIPGVDGVDNLAHI 216
+ G DG L+ +
Sbjct: 601 KLYSVGGRDGSSCLSSM 617
>sp|Q9JI74|KLHL1_MOUSE Kelch-like protein 1 OS=Mus musculus GN=Klhl1 PE=1 SV=2
Length = 751
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 48/197 (24%)
Query: 54 RYSFQPWKENYLLGP-------SISTLRDLGGLDRNLIVRKNQKYRLLSSMWLHAGIIHL 106
+Y P + + P ++ TL +GG+D N +KY L +++W+ AG
Sbjct: 438 KYHLLPERRTLMQSPRTKPRKSTVGTLYAVGGMDNNKGATTIEKYDLRTNLWIQAG---- 493
Query: 107 VVNMTSLMLVSYRLEQEFGFARIAP-LYLLSGFGG----SLLSCLHHKGKKEIVSVGASG 161
M+ RL +FG A I L+++ G G + + C + K K V S
Sbjct: 494 -------MMNGRRL--QFGVAVIDDKLFVIGGRDGLKTLNTVECYNPKTKTWTVLPPMST 544
Query: 162 ALFGLLGTMLSELI----------------------ANWTIYANKCTSLSVLGSVIALNL 199
GL T+L I WT A+ + S +G V ALN
Sbjct: 545 HRHGLGVTVLEGPIYAVGGHDGWSYLNTVERWDPQSQQWTYVASMSIARSTVG-VAALNG 603
Query: 200 AFGFIPGVDGVDNLAHI 216
+ G DG L+ +
Sbjct: 604 KLYSVGGRDGSSCLSSM 620
>sp|Q9H300|PARL_HUMAN Presenilins-associated rhomboid-like protein, mitochondrial OS=Homo
sapiens GN=PARL PE=1 SV=2
Length = 379
Score = 31.6 bits (70), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 6/136 (4%)
Query: 93 LLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLHHKGKK 152
+L S + H + H+ NM L S + G + +YL +G + +S +
Sbjct: 209 MLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQFMAVYLSAGVISNFVSYVGKVATG 268
Query: 153 EI-VSVGASGALFGLLGTMLSEL----IANWTIYANKCTSLSVLGSVIALNLAFGFIPGV 207
S+GASGA+ +L + +++ +A + T+ + L ++IA++ A G I G
Sbjct: 269 RYGPSLGASGAIMTVLAAVCTKIPEGRLAIIFLPMFTFTAGNALKAIIAMDTA-GMILGW 327
Query: 208 DGVDNLAHIGGFASGV 223
D+ AH+GG G+
Sbjct: 328 KFFDHAAHLGGALFGI 343
>sp|Q5R5H4|PARL_PONAB Presenilins-associated rhomboid-like protein, mitochondrial
OS=Pongo abelii GN=PARL PE=2 SV=1
Length = 379
Score = 31.6 bits (70), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 6/136 (4%)
Query: 93 LLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLHHKGKK 152
+L S + H + H+ NM L S + G + +YL +G + +S +
Sbjct: 209 MLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQFMAVYLSAGVISNFVSYVGKVATG 268
Query: 153 EI-VSVGASGALFGLLGTMLSEL----IANWTIYANKCTSLSVLGSVIALNLAFGFIPGV 207
S+GASGA+ +L + +++ +A + T+ + L ++IA++ A G I G
Sbjct: 269 RYGPSLGASGAIMTVLAAVCTKIPEGRLAIIFLPMFTFTAGNALKAIIAMDTA-GMILGW 327
Query: 208 DGVDNLAHIGGFASGV 223
D+ AH+GG G+
Sbjct: 328 KFFDHAAHLGGALFGI 343
>sp|Q8LB17|Y3846_ARATH Uncharacterized protein At3g58460 OS=Arabidopsis thaliana
GN=At3g58460 PE=1 SV=2
Length = 403
Score = 31.6 bits (70), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 84 IVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYL 134
I+ + Q YR +++ H ++H++ NM +L+ + LE+ G R+ LYL
Sbjct: 58 IISRFQVYRFYTAIIFHGSLLHVLFNMMALVPMGSELERIMGSVRL--LYL 106
>sp|Q4WLP9|RBD2_ASPFU Rhomboid protein 2 OS=Neosartorya fumigata (strain ATCC MYA-4609 /
Af293 / CBS 101355 / FGSC A1100) GN=rbd2 PE=3 SV=1
Length = 272
Score = 31.2 bits (69), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 72/178 (40%), Gaps = 13/178 (7%)
Query: 91 YRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYL--LSGF-GGSLLSCLH 147
YRL + ++H G H VN+ +L + R E E G L++ LS F G +
Sbjct: 66 YRLNTYPFIHVGFFHAFVNLLALTPLLERFEAEHGTLTAVALFIGPLSTFPAGIYILVEK 125
Query: 148 HKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGS-VIALNLAFGFIPG 206
+ VGAS +F LLG+ + + ++ T + S + A L F+P
Sbjct: 126 FILRSNTAVVGASVWIFLLLGSEAIKTFKSNPYFSLGTTKIPTWTSPLFACALVSIFVP- 184
Query: 207 VDGVDNLAHIGGFASGVLLG---FILFLRPQYGYVSEKYIAAGYDAKHRQPKYMHYQQ 261
L H+ G LLG +F+ P+ ++I + R P Y+ Q
Sbjct: 185 --NTSFLGHLSAIIIGYLLGLGYLKVFVPPEK---ILRWIEGKLNLLGRLPHYVSVDQ 237
>sp|Q4V8F3|RHBL4_RAT Rhomboid-related protein 4 OS=Rattus norvegicus GN=Rhbdd1 PE=2 SV=1
Length = 316
Score = 31.2 bits (69), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 13/92 (14%)
Query: 86 RKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFG---FARI--------APLYL 134
++N RLL S H HL NM S++ +LE+ G FA I +YL
Sbjct: 61 QQNDWQRLLLSPVHHGDDWHLYFNMVSMLWKGVKLEKRLGSRWFAYIIATFSLLTGVVYL 120
Query: 135 LSGFGGSLLSCLHHKGKKEIVSVGASGALFGL 166
L F + L ++ K +VG SG LF L
Sbjct: 121 LLQFASAEL--MNQPDFKRNCAVGFSGVLFAL 150
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.142 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,307,421
Number of Sequences: 539616
Number of extensions: 4255891
Number of successful extensions: 12346
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 12212
Number of HSP's gapped (non-prelim): 108
length of query: 277
length of database: 191,569,459
effective HSP length: 116
effective length of query: 161
effective length of database: 128,974,003
effective search space: 20764814483
effective search space used: 20764814483
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)