Query 023789
Match_columns 277
No_of_seqs 230 out of 1769
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 06:40:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023789.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023789hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00101 rhomboid-1 protease; 100.0 2.8E-35 6.2E-40 260.4 23.3 193 8-231 48-240 (278)
2 KOG2289 Rhomboid family protei 100.0 1.5E-35 3.2E-40 264.2 6.6 257 9-276 36-294 (316)
3 PRK10907 intramembrane serine 100.0 6.3E-29 1.4E-33 220.4 17.1 178 12-232 93-271 (276)
4 COG0705 Membrane associated se 99.9 4.8E-27 1E-31 204.4 16.7 202 3-234 5-214 (228)
5 PF01694 Rhomboid: Rhomboid fa 99.9 9.1E-25 2E-29 176.5 4.5 143 86-234 2-145 (145)
6 KOG2290 Rhomboid family protei 99.8 1.9E-20 4.2E-25 170.6 7.7 165 61-232 421-586 (652)
7 KOG2632 Rhomboid family protei 99.7 1.4E-17 3E-22 143.7 12.1 178 9-228 11-195 (258)
8 KOG2980 Integral membrane prot 99.0 2.7E-10 5.9E-15 100.4 3.9 179 15-232 117-302 (310)
9 PF08551 DUF1751: Eukaryotic i 98.6 5.2E-08 1.1E-12 73.8 4.0 80 89-168 7-95 (99)
10 PF04511 DER1: Der1-like famil 98.5 4.5E-06 9.8E-11 71.1 13.5 99 12-147 1-103 (197)
11 KOG0858 Predicted membrane pro 97.9 4.3E-05 9.4E-10 65.8 7.8 98 11-145 11-112 (239)
12 KOG2890 Predicted membrane pro 97.4 0.00062 1.3E-08 60.6 7.1 83 88-170 65-156 (326)
13 COG5291 Predicted membrane pro 95.8 0.031 6.7E-07 48.5 6.8 45 83-127 53-99 (313)
14 KOG4463 Uncharacterized conser 95.6 0.0064 1.4E-07 53.1 1.8 64 83-147 44-107 (323)
15 KOG2290 Rhomboid family protei 92.8 0.16 3.5E-06 48.0 4.6 83 12-95 199-286 (652)
16 PF07895 DUF1673: Protein of u 73.9 13 0.00029 31.7 6.8 56 217-272 83-138 (205)
17 TIGR02854 spore_II_GA sigma-E 73.1 25 0.00054 31.7 8.7 31 104-134 11-41 (288)
18 PF04892 VanZ: VanZ like famil 72.9 41 0.00089 25.9 9.1 40 194-233 89-130 (133)
19 PF03419 Peptidase_U4: Sporula 65.1 93 0.002 27.9 10.7 39 104-146 11-49 (293)
20 KOG4112 Signal peptidase subun 54.6 11 0.00024 27.9 2.2 36 241-276 10-45 (101)
21 PF09527 ATPase_gene1: Putativ 54.3 59 0.0013 21.2 6.4 41 105-145 9-50 (55)
22 COG0705 Membrane associated se 53.3 12 0.00025 32.2 2.6 73 84-173 134-206 (228)
23 COG4452 CreD Inner membrane pr 51.9 2.1E+02 0.0046 27.0 12.7 113 119-240 314-431 (443)
24 PRK10720 uracil transporter; P 44.1 1.4E+02 0.0031 28.4 8.6 28 213-240 389-416 (428)
25 COG2056 Predicted permease [Ge 43.7 44 0.00096 31.2 4.8 26 215-240 197-222 (444)
26 PF13105 DUF3959: Protein of u 42.8 1.6E+02 0.0035 24.8 7.5 23 212-234 133-155 (239)
27 PF07301 DUF1453: Protein of u 42.0 1.9E+02 0.0041 23.5 9.0 32 203-235 49-80 (148)
28 TIGR00751 menA 1,4-dihydroxy-2 36.0 3.2E+02 0.007 24.4 11.6 23 209-231 161-183 (284)
29 PF06946 Phage_holin_5: Phage 35.6 1.8E+02 0.004 21.6 7.5 13 216-228 65-77 (93)
30 PF06123 CreD: Inner membrane 35.0 4.2E+02 0.009 25.5 12.5 59 119-177 314-376 (430)
31 PF04973 NMN_transporter: Nico 34.8 2.6E+02 0.0056 23.0 8.3 11 160-170 6-16 (181)
32 PF06295 DUF1043: Protein of u 34.0 14 0.00029 29.1 0.0 17 216-232 3-19 (128)
33 PF02652 Lactate_perm: L-lacta 33.8 4.6E+02 0.0099 25.8 10.5 26 100-125 94-119 (522)
34 TIGR02235 menA_cyano-plnt 1,4- 32.9 3.6E+02 0.0078 24.1 9.2 25 209-233 158-182 (285)
35 PRK11715 inner membrane protei 32.0 4.7E+02 0.01 25.2 12.2 58 120-177 321-382 (436)
36 PF14898 DUF4491: Domain of un 31.2 2E+02 0.0043 21.4 5.7 44 103-147 3-52 (94)
37 PTZ00101 rhomboid-1 protease; 29.2 4.2E+02 0.0092 23.7 11.0 13 218-230 223-235 (278)
38 PRK11677 hypothetical protein; 29.0 24 0.00051 28.1 0.6 21 212-232 3-23 (134)
39 COG3105 Uncharacterized protei 28.9 60 0.0013 25.6 2.8 24 210-233 6-29 (138)
40 PTZ00127 cytochrome c oxidase 28.7 4.9E+02 0.011 24.6 9.5 14 212-225 218-231 (403)
41 PRK13108 prolipoprotein diacyl 28.1 2.8E+02 0.006 26.9 7.8 12 217-228 134-145 (460)
42 PF05546 She9_MDM33: She9 / Md 26.8 55 0.0012 28.0 2.5 27 9-35 148-174 (207)
43 PF09858 DUF2085: Predicted me 26.7 2.6E+02 0.0057 20.6 6.8 20 208-227 72-91 (93)
44 PF12732 YtxH: YtxH-like prote 26.1 51 0.0011 23.0 1.9 22 213-234 3-24 (74)
45 PRK12437 prolipoprotein diacyl 25.4 4.8E+02 0.01 23.1 8.8 10 160-169 57-66 (269)
46 KOG0255 Synaptic vesicle trans 24.5 3.8E+02 0.0082 25.6 8.2 43 104-147 126-168 (521)
47 PF06912 DUF1275: Protein of u 23.1 1.8E+02 0.0039 24.4 5.1 23 252-274 75-97 (209)
48 PF13260 DUF4051: Protein of u 22.2 99 0.0021 20.0 2.4 17 259-276 3-19 (54)
49 PRK13387 1,4-dihydroxy-2-napht 21.9 6E+02 0.013 23.1 11.8 16 217-232 194-209 (317)
50 PF10225 DUF2215: Uncharacteri 21.3 5.6E+02 0.012 22.5 10.8 25 249-273 120-144 (249)
51 PF09889 DUF2116: Uncharacteri 21.2 37 0.00081 23.0 0.3 19 255-273 34-53 (59)
52 TIGR02230 ATPase_gene1 F0F1-AT 20.7 3.7E+02 0.0081 20.2 6.3 42 104-145 50-92 (100)
53 PF11286 DUF3087: Protein of u 20.7 3.6E+02 0.0079 22.3 6.0 40 200-239 37-77 (165)
54 PF06609 TRI12: Fungal trichot 20.6 8.7E+02 0.019 24.4 13.9 42 105-147 87-128 (599)
55 PF10966 DUF2768: Protein of u 20.5 60 0.0013 21.9 1.2 25 251-275 23-47 (58)
56 PF13253 DUF4044: Protein of u 20.4 1.1E+02 0.0024 18.4 2.3 12 251-262 4-15 (35)
57 TIGR00341 conserved hypothetic 20.3 6.9E+02 0.015 23.0 9.8 30 210-239 267-296 (325)
58 COG4858 Uncharacterized membra 20.0 5.5E+02 0.012 21.8 10.6 17 190-206 171-187 (226)
No 1
>PTZ00101 rhomboid-1 protease; Provisional
Probab=100.00 E-value=2.8e-35 Score=260.43 Aligned_cols=193 Identities=27% Similarity=0.436 Sum_probs=153.7
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHhhhhcccccccCcccccCCCCHHHHHhcCCCchhhhhhc
Q 023789 8 PEQWRAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGPSISTLRDLGGLDRNLIVRK 87 (277)
Q Consensus 8 ~~~~~p~vt~~li~i~v~vf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~L~~~Ga~~~~~i~~~ 87 (277)
|+.+.+.+|..++++|+++|+++.... .+..++|+++.+.++|+++++.+ .+
T Consensus 48 p~f~i~~l~~~Iiii~iivfil~l~~~---------------------------~~~~l~p~~~~L~~~Ga~~~~~i-~~ 99 (278)
T PTZ00101 48 PHFTWKSFIMAISIIQIIVFIISVSIK---------------------------PADFLTPSDSLLVTLGANVASRI-KQ 99 (278)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHhc---------------------------ccccCCCCHHHHHHHhCcchhhh-hc
Confidence 444557799999999999999876421 11235688899999999998766 68
Q ss_pred CCceeeeecccccCChhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcCCCCccccccHHHHHHHH
Q 023789 88 NQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGLL 167 (277)
Q Consensus 88 gq~wrllTs~F~H~~~~HLl~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~~~~~~vGaSG~i~Gl~ 167 (277)
+||||++|++|+|.|+.|+++||+.++.+|..+|+.+|++|+..+|+++|+.|++++..+ .+...++||||++||++
T Consensus 100 gq~WRLiT~~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~ilYl~sGi~G~l~s~~~---~~~~~svGASgAifGLi 176 (278)
T PTZ00101 100 GEIHRLILPIFLHANIFHTFFNVFFQLRMGFTLEKNYGIVKIIILYFLTGIYGNILSSSV---TYCPIKVGASTSGMGLL 176 (278)
T ss_pred CCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHH---ccCCcEEehhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999887 45678999999999999
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhh
Q 023789 168 GTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFL 231 (277)
Q Consensus 168 g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vs~~aHlgG~l~G~l~g~~~~~ 231 (277)
|+.++.....|...+.+...+..+..+..+.+...+....+++|+.||+||+++|+++|..+.+
T Consensus 177 Ga~~~~lil~w~~~~~~~~~~~~~i~~~li~~~l~~~~~g~~Id~~aHlGG~i~G~llg~~~~~ 240 (278)
T PTZ00101 177 GIVTSELILLWHVIRHRERVVFNIIFFSLISFFYYFTFNGSNIDHVGHLGGLLSGISMGILYNS 240 (278)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHh
Confidence 9998777677665444433332222222222222222224679999999999999999988754
No 2
>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-35 Score=264.19 Aligned_cols=257 Identities=45% Similarity=0.751 Sum_probs=223.6
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCCC--CchhHHhhhhcccccccCcccccCCCCHHHHHhcCCCchhhhhh
Q 023789 9 EQWRAWLTPVIFVVCIIMFVYTMHVNNCPAKTAD--SHQCVLRDILGRYSFQPWKENYLLGPSISTLRDLGGLDRNLIVR 86 (277)
Q Consensus 9 ~~~~p~vt~~li~i~v~vf~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~L~~~Ga~~~~~i~~ 86 (277)
..+.++........|+..|....+.++++....| -..|.-..++.+|.+.+.++||..+|+.+++.+.|+..-++.++
T Consensus 36 ~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~~~~~~~l~~f~~~~~~~n~~~~~s~~~~~~~~~~~i~~~~~ 115 (316)
T KOG2289|consen 36 RSWTKWLIPRFAVANVPEFIVVMYVNDCPKCCPPPIFMLCLAIVFLGRFSFQGLRENPLLGPSSLTLEKMGGLLIYKPVH 115 (316)
T ss_pred chhhHHHHhHHHhhccchhheeeeeecccccCCCchhhhhhhhhhhheeeeeeeccCCccCcCCCCccccCCceecChhh
Confidence 4455678888889999999777777777663322 12254334889999999999999999999999999999889999
Q ss_pred cCCceeeeecccccCChhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcCCCCccccccHHHHHHH
Q 023789 87 KNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGL 166 (277)
Q Consensus 87 ~gq~wrllTs~F~H~~~~HLl~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~~~~~~vGaSG~i~Gl 166 (277)
++|+||++|++|+|+|+.|+.+||+.+.++|..+|..+|.+|+.++|+++|+.|++++.++ +++.++|||||++||+
T Consensus 116 r~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~~~G~~RiglIYl~gg~aGSlls~l~---d~~~~sVGASggvfaL 192 (316)
T KOG2289|consen 116 RGELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQVHGFLRIGLIYLAGGVAGSLLSSLF---DPNSISVGASGGVFAL 192 (316)
T ss_pred hchhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHhhcCceEEeeehhhhhhhhHHHHHHh---ccCCceecccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 7889999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhhcccCCccchhccccc
Q 023789 167 LGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQYGYVSEKYIAAG 246 (277)
Q Consensus 167 ~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vs~~aHlgG~l~G~l~g~~~~~~~~~~~~~~~~~~~~ 246 (277)
+|+.++....||..++.+...+..+++++.+++..++.|. +++++|+||++.|..+++....+.+..|...+...
T Consensus 193 lgA~Ls~l~~Nw~~m~~~~~~l~~ll~Ii~i~l~~G~~~~---~~~~~h~gg~~~G~~~~fil~~~g~~~~~~~~~~~-- 267 (316)
T KOG2289|consen 193 LGAHLSNLLTNWTIMKNKFAALRTLLIIIFINLDLGFAPY---VDNFAHIGGLLAGFLLGFVLHIGGQLGGITIGLIV-- 267 (316)
T ss_pred HHHHHHHHHhhHHHhcchHHHHHHHHHHHHHHHhhccccc---eeccccccccCCCcchhHHhhhccceeEEecccee--
Confidence 9999999999999999988888888888899999999888 88899999999999999999999999888765543
Q ss_pred cccccCCCccchHHHHHHHHHHHHHHHhhc
Q 023789 247 YDAKHRQPKYMHYQQLCWIIALILLVLGYI 276 (277)
Q Consensus 247 ~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~ 276 (277)
.|.+.|++.+|...++...+++++++.
T Consensus 268 ---~~~~~~~~~~q~~~w~~~~~~~v~~~~ 294 (316)
T KOG2289|consen 268 ---LRVFSKRLPYQLLLWIVLLVYLVAGLF 294 (316)
T ss_pred ---eeccccccccchHHHHHHHHHHHHHHH
Confidence 356666777777777777777777654
No 3
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=99.96 E-value=6.3e-29 Score=220.40 Aligned_cols=178 Identities=15% Similarity=0.176 Sum_probs=127.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHhhhhcccccccCcccccCCCCHHHHHhcCCCchhhhhhcCCce
Q 023789 12 RAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGPSISTLRDLGGLDRNLIVRKNQKY 91 (277)
Q Consensus 12 ~p~vt~~li~i~v~vf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~L~~~Ga~~~~~i~~~gq~w 91 (277)
..++|..++++|+++|++...... ....... . +|.....++|||
T Consensus 93 ~~p~T~~li~i~i~vf~l~~~~~~-------------~~~~~~l----------------------~-~~~~~~~~~q~W 136 (276)
T PRK10907 93 AGPLTLGVMIACVVVFILMQILGD-------------QTVMLWL----------------------A-WPFDPSLKFELW 136 (276)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcc-------------HHHHHHH----------------------h-ccccccccCCcH
Confidence 456999999999999998765321 1111111 1 111233589999
Q ss_pred eeeecccccCChhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcCCCCccccccHHHHHHHHHHHH
Q 023789 92 RLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGLLGTML 171 (277)
Q Consensus 92 rllTs~F~H~~~~HLl~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~~~~~~vGaSG~i~Gl~g~~~ 171 (277)
|++|++|+|.|+.|+++||+++|.+|..+|+.+|+++++.+|+++++.|++.+.++. ....+|+||++||++|+..
T Consensus 137 Rl~T~~flH~~~~Hl~fNml~l~~lG~~iE~~~G~~~~l~l~l~s~i~~~~~~~~~~----~~~~gGaSGvVygL~g~~~ 212 (276)
T PRK10907 137 RYFTHALLHFSLLHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGWVQSKFS----GPWFGGLSGVVYALMGYVW 212 (276)
T ss_pred HHHhHHHHhCCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHc----cchhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988873 3468899999999999875
Q ss_pred HHHHHhhh-hhhhhHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhhc
Q 023789 172 SELIANWT-IYANKCTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLR 232 (277)
Q Consensus 172 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vs~~aHlgG~l~G~l~g~~~~~~ 232 (277)
........ ....+...+..+++++..... +.. ..+|++.||++|+++|+++|+...++
T Consensus 213 ~~~~~~p~~~~~lp~~~~~f~llwl~~g~~-~~~--g~~Ian~AHlgGli~Gll~g~~~~~~ 271 (276)
T PRK10907 213 LRGERDPQSGIYLPRGLIAFALLWLVAGYF-DLF--GMSIANAAHVAGLAVGLAMAFWDTRN 271 (276)
T ss_pred HHhccccccchhhhHHHHHHHHHHHHHHHH-Hcc--CcccHHHHHHHHHHHHHHHHHHhhhh
Confidence 33211100 011122222223333322221 222 45799999999999999999876543
No 4
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]
Probab=99.95 E-value=4.8e-27 Score=204.43 Aligned_cols=202 Identities=26% Similarity=0.371 Sum_probs=145.4
Q ss_pred CCCCCCCCCc--chHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHhhhhcccccccCcccccCCCCHHHHHhcCCCc
Q 023789 3 NKPYAPEQWR--AWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGPSISTLRDLGGLD 80 (277)
Q Consensus 3 ~~~~~~~~~~--p~vt~~li~i~v~vf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~L~~~Ga~~ 80 (277)
+.+.++.+.. +++|..++.+|+++|+...+....... ......+.+++.|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-------------------- 57 (228)
T COG0705 5 RRDRNPWRLIRAPPVTLFLILLNILVFLLELVLGWSAIF-------LLTFLFRLFGLYPL-------------------- 57 (228)
T ss_pred ccccchHHhcccchHHHHHHHHHHHHHHHHHHccchHHH-------HHHHhhhHHhhcch--------------------
Confidence 3444444444 889999999999999998865431000 00011112233332
Q ss_pred hhhhhhcC---CceeeeecccccCChhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 023789 81 RNLIVRKN---QKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLHHKGKKEIVSV 157 (277)
Q Consensus 81 ~~~i~~~g---q~wrllTs~F~H~~~~HLl~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~~~~~~v 157 (277)
...... |+||++|++|+|.|+.|+++||+.++.+|..+|+..|+.+++.+|+.+|+++++.+..+.. ....+++
T Consensus 58 --~~~~~~~~~~~w~lit~~FlH~~~~Hll~N~~~l~~fg~~le~~~G~~~f~~~yl~~gl~~~~~~~~~~~-~~~~~~~ 134 (228)
T COG0705 58 --NLLGALARDQLWRLITAIFLHAGFLHLLFNMLALWVFGSNLERRLGTLRFLLFYLLSGLLAGLAQVLFGP-KGGAPSL 134 (228)
T ss_pred --hhhccccccchHHHHHHHHHHhhHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHcc-cccCccc
Confidence 222111 9999999999999999999999999999999999999999999999999999999888842 1114899
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhhccc
Q 023789 158 GASGALFGLLGTMLSELIANWTIYA---NKCTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQ 234 (277)
Q Consensus 158 GaSG~i~Gl~g~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~vs~~aHlgG~l~G~l~g~~~~~~~~ 234 (277)
||||+++|++++++........... .+......+.+++..++........+++++.||++|++.|.+++..+.++.+
T Consensus 135 GASG~i~gllga~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~~~~~~ 214 (228)
T COG0705 135 GASGAIFGLLGAYFLLFPFARILLLFLSLPRPALILILIWLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALLSRKLR 214 (228)
T ss_pred chhHHHHHHHHHHHHHccccchhhhhccCchhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999754332222111 3344555566666666666655333479999999999999999988876543
No 5
>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=99.90 E-value=9.1e-25 Score=176.55 Aligned_cols=143 Identities=40% Similarity=0.615 Sum_probs=102.6
Q ss_pred hcCCceeeeecccccCChhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcCCCCc-cccccHHHHH
Q 023789 86 RKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLHHKGKKEI-VSVGASGALF 164 (277)
Q Consensus 86 ~~gq~wrllTs~F~H~~~~HLl~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~~~~-~~vGaSG~i~ 164 (277)
+++|+||++|++|+|.|+.|+++|++.++.+|..+|+.+|++++..+|+.+++.+++...+.. +.. +.+|+||+++
T Consensus 2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~~---~~~~~~~G~Sg~~~ 78 (145)
T PF01694_consen 2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLLSGLLGSLLSLLFS---PPNQPYVGASGAVF 78 (145)
T ss_dssp GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----S-----SSHHHHH
T ss_pred CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHHHHHhhhhcccccc---ccccccCCCcccch
Confidence 589999999999999999999999999999999999999999999999999999999998884 344 8999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhhccc
Q 023789 165 GLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQ 234 (277)
Q Consensus 165 Gl~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vs~~aHlgG~l~G~l~g~~~~~~~~ 234 (277)
|++++.......+++....+..........+...+..+. .+++++.+|++|+++|++++..+.+|+|
T Consensus 79 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~hl~G~~~G~~~~~~~~~~~~ 145 (145)
T PF01694_consen 79 GLLGAFLFLYPQNKKRLRFIYLALVVPIIVLVIILLLGF---IPNISFLGHLGGFLAGLLYGFLILRRPQ 145 (145)
T ss_dssp HHHHHHHHHHHCCCCCS---HCCCCCCCCCCCHHHCTSS---SSTTTHHHHHHHHHHHHHHHHHHCH---
T ss_pred HHHHHHHHHHhhccchhhcchHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 999999766554433222211111111111122222222 4569999999999999999999887653
No 6
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=99.82 E-value=1.9e-20 Score=170.57 Aligned_cols=165 Identities=33% Similarity=0.499 Sum_probs=141.5
Q ss_pred cccccCCCCHHHHHhcCCCchhhhh-hcCCceeeeecccccCChhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 023789 61 KENYLLGPSISTLRDLGGLDRNLIV-RKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFG 139 (277)
Q Consensus 61 ~~~~~~~~~~~~L~~~Ga~~~~~i~-~~gq~wrllTs~F~H~~~~HLl~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~ 139 (277)
.+|..+..+.+.+.+.-++-|...- ...|.||++||.|+|+++.|++..+...+.+-+.+|+..|+.|...+|+++|+.
T Consensus 421 HEeAtLCSQVhC~d~VCGllPFln~e~PdQfYRL~~SLFlHagviH~~vSi~FQm~vmrdlEkL~g~~riAIiy~~SGit 500 (652)
T KOG2290|consen 421 HEEATLCSQVHCFDGVCGLLPFLNPEVPDQFYRLWLSLFLHAGVIHLLVSICFQMTVMRDLEKLAGWHRIAIIYFLSGIT 500 (652)
T ss_pred hhhhhhhhhhhhhhcccccccccCCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcchhhheeeeccccc
Confidence 4666666677777777666553222 468999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCccccccHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 023789 140 GSLLSCLHHKGKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGF 219 (277)
Q Consensus 140 g~l~~~l~~~~~~~~~~vGaSG~i~Gl~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vs~~aHlgG~ 219 (277)
||+++.++ .++.+.+|.||+=+|+++..++.++..|+...++.....-+++.+.... .|++|. ||+++|+.|+
T Consensus 501 GNLASAIF---lpY~~eVgPa~sQ~Gila~l~vEl~qs~~il~~~w~a~~~Lia~~L~L~-iGliPW---iDN~aHlfG~ 573 (652)
T KOG2290|consen 501 GNLASAIF---LPYRAEVGPAGSQFGILACLFVELFQSWQILERPWRAFFHLIATLLVLC-IGLIPW---IDNWAHLFGT 573 (652)
T ss_pred ccchheee---eccccccCCcccccchHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHH-hccccc---hhhHHHHHHH
Confidence 99999999 7889999999999999999999999999998888776655544444333 489898 9999999999
Q ss_pred HHHHHHHHHHhhc
Q 023789 220 ASGVLLGFILFLR 232 (277)
Q Consensus 220 l~G~l~g~~~~~~ 232 (277)
+.|++..+.+.+-
T Consensus 574 i~GLl~s~~~~PY 586 (652)
T KOG2290|consen 574 IFGLLTSIIFLPY 586 (652)
T ss_pred HHHHHHHHHhhcc
Confidence 9999999988764
No 7
>KOG2632 consensus Rhomboid family proteins [Function unknown]
Probab=99.75 E-value=1.4e-17 Score=143.70 Aligned_cols=178 Identities=20% Similarity=0.211 Sum_probs=126.1
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHhhhhcccccccCcccccCCCCHHHHHhcCCCchhhhhhcC
Q 023789 9 EQWRAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGPSISTLRDLGGLDRNLIVRKN 88 (277)
Q Consensus 9 ~~~~p~vt~~li~i~v~vf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~L~~~Ga~~~~~i~~~g 88 (277)
--+.|.+|.++..++.++|+...... ..+.+ ..+.....+.
T Consensus 11 ~~~~p~~ts~~~~~~~~i~lv~~~~~----------------i~~~~-----------------------~l~~~~l~~~ 51 (258)
T KOG2632|consen 11 WMKIPLLTSIVVVLAILIYLVSFFPG----------------IVEVL-----------------------GLPSELLINW 51 (258)
T ss_pred cccchHHHHHHHHHHHHHHHHhccch----------------hhhHh-----------------------cCCHHHhhhH
Confidence 33568899999999999999765311 11111 1123567899
Q ss_pred CceeeeecccccCChhHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHHhhc------CCCCccccccHH
Q 023789 89 QKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFG-FARIAPLYLLSGFGGSLLSCLHHK------GKKEIVSVGASG 161 (277)
Q Consensus 89 q~wrllTs~F~H~~~~HLl~N~~~l~~~G~~lE~~~G-~~~~l~lyl~~gi~g~l~~~l~~~------~~~~~~~vGaSG 161 (277)
|.||++||+++|.+..|+++||+++|..|..+|+.+| +.+++....+.++..+++.++... .......+|.||
T Consensus 52 ql~RL~Ty~l~H~s~~hllfnmlaL~~~g~~fE~~~G~t~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~~~a~G~s~ 131 (258)
T KOG2632|consen 52 QLYRLITYALVHLSLPHLLFNMLALWPLGSQFERTHGTTVRILMFTVLLALFSGILYLLAYHVFLLSDLVYVEGAIGFSG 131 (258)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhchhHHHhhccceehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccccH
Confidence 9999999999999999999999999999999999999 899999999999999988887752 112345799999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHH
Q 023789 162 ALFGLLGTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFI 228 (277)
Q Consensus 162 ~i~Gl~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vs~~aHlgG~l~G~l~g~~ 228 (277)
+.|++++...................-.....+..+.+..-+. ++.|+.+|++|+++|+.+++.
T Consensus 132 v~Fam~~~~~~~sp~r~~~~fg~~siP~~l~Pw~lLi~~~~lv---p~aSFlghl~GllvG~ay~~~ 195 (258)
T KOG2632|consen 132 VLFAMMAVLEVQSPVRSRSVFGLFSIPIVLAPWALLIATQILV---PQASFLGHLCGLLVGYAYAFS 195 (258)
T ss_pred HHHHHHHHHhhcCcccchhhcccccccHHHHHHHHHHHHHHHc---cCchHHHHHHHHHHHHHHHHH
Confidence 9999999965432211100010000011122333333333344 459999999999999999983
No 8
>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]
Probab=98.99 E-value=2.7e-10 Score=100.36 Aligned_cols=179 Identities=20% Similarity=0.245 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHhhhhcccccccCcccccCCCCHHHHHhcCCCchhhhhhcCCceeee
Q 023789 15 LTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGPSISTLRDLGGLDRNLIVRKNQKYRLL 94 (277)
Q Consensus 15 vt~~li~i~v~vf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~L~~~Ga~~~~~i~~~gq~wrll 94 (277)
+.+.++++|+++|..|.+.+- +.....|... +.....--|.++
T Consensus 117 ~v~~ll~~n~~vf~lWrv~~~-------------~~~~~~~mls------------------------~~~~~t~~w~i~ 159 (310)
T KOG2980|consen 117 VVFGLLIANAFVFTLWRVPQK-------------QFTMIPWMLS------------------------RNAYKTGCWKII 159 (310)
T ss_pred chhHHHHHHHHHHHHHHhcch-------------hhhhhhHHhh------------------------cccccccceeEE
Confidence 888999999999999986421 1222222211 112233446699
Q ss_pred ecccccCChhHHHHHHHHHHHHHH-HHHHhhchhHHHHHHHHHHHHHHHHHHHhhc-CCCCccccccHHHHHHHHHHHHH
Q 023789 95 SSMWLHAGIIHLVVNMTSLMLVSY-RLEQEFGFARIAPLYLLSGFGGSLLSCLHHK-GKKEIVSVGASGALFGLLGTMLS 172 (277)
Q Consensus 95 Ts~F~H~~~~HLl~N~~~l~~~G~-~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~-~~~~~~~vGaSG~i~Gl~g~~~~ 172 (277)
+|.|.|.+.+|+..||+.++.+.. .+....|...+..+|+.++..|......-.. .....+.+||||+++++++....
T Consensus 160 ~s~Fsh~~a~h~g~~~~~~~~y~~~a~~~~~~~~~~~AlylSa~~~~~~i~~~~~v~~~~~gp~LGAsGav~ai~a~~~~ 239 (310)
T KOG2980|consen 160 LSTFSHYSALHLGPNMLVLKSYLAGALKGSLGFSSFFALYLSAGVKGLFISVKDKVPTSWAGPSLGASGAVYAILALDCT 239 (310)
T ss_pred eehhcchhHhhhcHHHHHHHHHhcccccCCcchhhcccceeccccccceeEeeccccccccccccccchHHHHHHHHHhh
Confidence 999999999999999999998888 7888999999999999666665544332211 23456789999999999998853
Q ss_pred HHHHhhhh-----hhhhHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhhc
Q 023789 173 ELIANWTI-----YANKCTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLR 232 (277)
Q Consensus 173 ~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vs~~aHlgG~l~G~l~g~~~~~~ 232 (277)
++++... ++.+..+...+-.+..+++...... ...-++.||++|.+.|..++.....|
T Consensus 240 -lfP~~~~~i~f~~~v~~ga~~~~~~i~~~~~a~~~l~-~~~~n~~Ah~~gsl~Gv~va~~~~~r 302 (310)
T KOG2980|consen 240 -LFPKTTLYILFVFPVPAGAGLAFKAIAAYDFAGLILG-WGFFNHAAHLSGSLFGVVVATYLWAR 302 (310)
T ss_pred -cCcCcceeEEEeecccccchhHHHHHHHhhhcceeec-cccchhHhhhcchHHHHHHHHHHHHH
Confidence 3333221 1122222111112222222222222 45677789999999999999887554
No 9
>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins. Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].
Probab=98.58 E-value=5.2e-08 Score=73.76 Aligned_cols=80 Identities=23% Similarity=0.320 Sum_probs=66.6
Q ss_pred CceeeeecccccCChhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhc------CCCC---cccccc
Q 023789 89 QKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLHHK------GKKE---IVSVGA 159 (277)
Q Consensus 89 q~wrllTs~F~H~~~~HLl~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~------~~~~---~~~vGa 159 (277)
++|+++|+.|++.++..++.|.+.++..|+.+|+.+|++.++-......+.+|+...+... .+.. .+.-|.
T Consensus 7 ~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~~~~~~~~~y~i~~~~~~l~~~i~G~ 86 (99)
T PF08551_consen 7 YPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNLLTFLLYLLLYAITGNESYLFVPISGF 86 (99)
T ss_pred ehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCceeEEEecCc
Confidence 7899999999999999999999999999999999999999999999888888877765443 1222 456677
Q ss_pred HHHHHHHHH
Q 023789 160 SGALFGLLG 168 (277)
Q Consensus 160 SG~i~Gl~g 168 (277)
+|.+.|++.
T Consensus 87 ~~~~~g~lV 95 (99)
T PF08551_consen 87 MGVLAGFLV 95 (99)
T ss_pred HHhHhheEE
Confidence 777777653
No 10
>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins. For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.
Probab=98.47 E-value=4.5e-06 Score=71.10 Aligned_cols=99 Identities=22% Similarity=0.248 Sum_probs=69.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHhhhhcccccccCcccccCCCCHHHHHhcCCCchhhhhhcCCce
Q 023789 12 RAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGPSISTLRDLGGLDRNLIVRKNQKY 91 (277)
Q Consensus 12 ~p~vt~~li~i~v~vf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~L~~~Ga~~~~~i~~~gq~w 91 (277)
.|++|...++.++++.++.... ..+ |. .+ ..+++.+.+++|+|
T Consensus 1 iPpVTR~~~~~~~~~s~l~~~~-----------------~~~-----~~-----------~l----~~~~~~v~~~~q~W 43 (197)
T PF04511_consen 1 IPPVTRYWLISTVALSLLVSFG-----------------IIS-----PY-----------YL----YFDWELVFKKFQIW 43 (197)
T ss_pred CChhHHHHHHHHHHHHHHHHCC-----------------CCC-----HH-----------He----eECcHHHhhhcCce
Confidence 3889999999988888876421 000 00 00 12334677899999
Q ss_pred eeeecccccCCh-hHHHHHHHHHHHHHHHHHHh-hch--hHHHHHHHHHHHHHHHHHHHh
Q 023789 92 RLLSSMWLHAGI-IHLVVNMTSLMLVSYRLEQE-FGF--ARIAPLYLLSGFGGSLLSCLH 147 (277)
Q Consensus 92 rllTs~F~H~~~-~HLl~N~~~l~~~G~~lE~~-~G~--~~~l~lyl~~gi~g~l~~~l~ 147 (277)
|++|+.|.-++. .+.++|+..++..++.+|+. +.. ..++...+.+++.-.+.+.+.
T Consensus 44 Rl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~~~~ady~~~ll~~~~~i~~~~~~~ 103 (197)
T PF04511_consen 44 RLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQGRSADYLWFLLFGASLILILSLLI 103 (197)
T ss_pred eeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999986654 69999999999999999997 332 457666666665555555443
No 11
>KOG0858 consensus Predicted membrane protein [Function unknown]
Probab=97.91 E-value=4.3e-05 Score=65.76 Aligned_cols=98 Identities=18% Similarity=0.181 Sum_probs=73.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHhhhhcccccccCcccccCCCCHHHHHhcCCCchhhhhhcCCc
Q 023789 11 WRAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGPSISTLRDLGGLDRNLIVRKNQK 90 (277)
Q Consensus 11 ~~p~vt~~li~i~v~vf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~L~~~Ga~~~~~i~~~gq~ 90 (277)
..|++|.....+|++.-++...- + +.|.. --.+|+.+.++.|+
T Consensus 11 ~iPpVTR~~~~~~v~tt~~~~l~-----------------l-----IsP~~---------------l~~~p~Lv~kk~Qi 53 (239)
T KOG0858|consen 11 QIPPVTRYYTTACVVTTLLVRLD-----------------L-----ISPFQ---------------LYLNPELVFKKFQI 53 (239)
T ss_pred cCChHHHHHHHHHHHHHHHHhhc-----------------c-----cCchh---------------eEecHHHHHhHhHH
Confidence 46899999999999988876521 1 11110 12345688899999
Q ss_pred eeeeecccccCC-hhHHHHHHHHHHHHHHHHHHhh---chhHHHHHHHHHHHHHHHHHH
Q 023789 91 YRLLSSMWLHAG-IIHLVVNMTSLMLVSYRLEQEF---GFARIAPLYLLSGFGGSLLSC 145 (277)
Q Consensus 91 wrllTs~F~H~~-~~HLl~N~~~l~~~G~~lE~~~---G~~~~l~lyl~~gi~g~l~~~ 145 (277)
||++|+.+.-+. -.|.++||+.++--++.+|+-. -+..|+.+.+.++++-.+.+.
T Consensus 54 WRliTs~lyfg~~gf~fl~n~~FlyrY~~~LE~g~f~~rtadf~~mllf~~~l~~~~~~ 112 (239)
T KOG0858|consen 54 WRLITSFLYFGPFGFDFLMNLYFLYRYSSMLEEGSFRGRTADFLYMLLFGAVLLTLTGL 112 (239)
T ss_pred HHhhhhhheeccccHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 999999998876 6899999999999999999743 236788888877777655443
No 12
>KOG2890 consensus Predicted membrane protein [Function unknown]
Probab=97.35 E-value=0.00062 Score=60.56 Aligned_cols=83 Identities=17% Similarity=0.245 Sum_probs=64.3
Q ss_pred CCceeeeecccccCChhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHH----hhc--CCC---Cccccc
Q 023789 88 NQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCL----HHK--GKK---EIVSVG 158 (277)
Q Consensus 88 gq~wrllTs~F~H~~~~HLl~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l----~~~--~~~---~~~~vG 158 (277)
...|+++|+.|+-.+++..+.|.+.+.+-|+.+|+.+|+..++..|.+.-...++.... .+. .+. ..+..|
T Consensus 65 ~~~WtliTs~fie~~vw~V~~sv~~L~v~G~~lEp~Wg~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G 144 (326)
T KOG2890|consen 65 FFPWTLITSGFIELNVWDVLVSVLTLSVGGKFLEPNWGSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHG 144 (326)
T ss_pred hhhHHHHhcchhhhhHHHHHHHHHheeecceeeccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEecc
Confidence 37899999999999999999999999999999999999999988886654333322221 111 111 135789
Q ss_pred cHHHHHHHHHHH
Q 023789 159 ASGALFGLLGTM 170 (277)
Q Consensus 159 aSG~i~Gl~g~~ 170 (277)
..|.+.|++.++
T Consensus 145 ~~gilaGilVa~ 156 (326)
T KOG2890|consen 145 TTGILAGILVAW 156 (326)
T ss_pred chHHHHHHHHHH
Confidence 999999999887
No 13
>COG5291 Predicted membrane protein [Function unknown]
Probab=95.83 E-value=0.031 Score=48.51 Aligned_cols=45 Identities=22% Similarity=0.338 Sum_probs=37.4
Q ss_pred hhhhcCCceeeeecccccCC-hhHHHHHHHHHHHHHHHHHH-hhchh
Q 023789 83 LIVRKNQKYRLLSSMWLHAG-IIHLVVNMTSLMLVSYRLEQ-EFGFA 127 (277)
Q Consensus 83 ~i~~~gq~wrllTs~F~H~~-~~HLl~N~~~l~~~G~~lE~-~~G~~ 127 (277)
..+++-|+||++|+...-++ -+..++|...++--.+.+|+ .+++.
T Consensus 53 L~~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g~f~~~ 99 (313)
T COG5291 53 LFLKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEGCFNTS 99 (313)
T ss_pred hHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHhccccCcc
Confidence 56688999999998877765 57899999999999999997 45554
No 14
>KOG4463 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.60 E-value=0.0064 Score=53.15 Aligned_cols=64 Identities=20% Similarity=0.268 Sum_probs=52.9
Q ss_pred hhhhcCCceeeeecccccCChhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHh
Q 023789 83 LIVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLH 147 (277)
Q Consensus 83 ~i~~~gq~wrllTs~F~H~~~~HLl~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~ 147 (277)
......|+||++.+.|...|--.+.+-.+.+|.+ +.+|+.+|+.||..+.+.++..+.++...+
T Consensus 44 ~l~~y~qywrlL~~qF~~~n~~e~~~~l~I~Y~f-R~~ERlLGShky~~fiv~s~~~~~l~~~il 107 (323)
T KOG4463|consen 44 ILEKYFQYWRLLMSQFAFSNTPELMFGLYILYYF-RVFERLLGSHKYSVFIVFSGTVSLLLEVIL 107 (323)
T ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHHHhccccceeehhHHHHHHHHHHHHH
Confidence 3445689999999999999988888876666665 899999999999999988888887766544
No 15
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=92.75 E-value=0.16 Score=47.96 Aligned_cols=83 Identities=22% Similarity=0.340 Sum_probs=56.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHhhhhccccc----c-cCcccccCCCCHHHHHhcCCCchhhhhh
Q 023789 12 RAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSF----Q-PWKENYLLGPSISTLRDLGGLDRNLIVR 86 (277)
Q Consensus 12 ~p~vt~~li~i~v~vf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-p~~~~~~~~~~~~~L~~~Ga~~~~~i~~ 86 (277)
+||.|+.|..+.+.|-++.+......+-+-+..+.. ++.++.-.. . -.++|+++||+.+.|...||.+.+-+.+
T Consensus 199 RP~FTyWlt~Vh~~V~iLsl~~YG~aP~gf~~~et~-~~Vl~n~~v~e~VkYlqQeN~WiGP~~~dLI~LGA~fSPCmrr 277 (652)
T KOG2290|consen 199 RPWFTYWLTFVHSFVTILSLCIYGIAPVGFSQHETV-GDVLDNTLVYERVKYLQQENFWIGPSSADLIHLGAKFSPCMRR 277 (652)
T ss_pred CchhHHHHHHHHHHHHHHHHHHhcCCcccchhhHhH-HHHHhhhhhhhhhHHHHhcCCccCccHHHHHHhccccChhhhc
Confidence 689999999999888887765544333211111111 111111100 0 1268999999999999999999999999
Q ss_pred cCCceeeee
Q 023789 87 KNQKYRLLS 95 (277)
Q Consensus 87 ~gq~wrllT 95 (277)
+.|.|..+-
T Consensus 278 d~q~~~~I~ 286 (652)
T KOG2290|consen 278 DPQVWSAIE 286 (652)
T ss_pred ChHHHHHHH
Confidence 999998874
No 16
>PF07895 DUF1673: Protein of unknown function (DUF1673); InterPro: IPR012874 This family contains hypothetical proteins of unknown function found in Methanosarcina acetivorans and Methanosarcina mazei.
Probab=73.85 E-value=13 Score=31.70 Aligned_cols=56 Identities=21% Similarity=0.170 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhhcccCCccchhccccccccccCCCccchHHHHHHHHHHHHHH
Q 023789 217 GGFASGVLLGFILFLRPQYGYVSEKYIAAGYDAKHRQPKYMHYQQLCWIIALILLV 272 (277)
Q Consensus 217 gG~l~G~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~k~~~~~~~~~~~~~~~~~~~ 272 (277)
.+++.|+.+++.+.....++..++-+.-+..+..|.+.|.+.+++++.++..+++.
T Consensus 83 ~~ll~g~~~~L~~~i~~wk~~~~~~d~i~k~~v~~~~~k~~~~~~l~~i~~~i~l~ 138 (205)
T PF07895_consen 83 LFLLAGLILSLYLYIFSWKKQMIRYDDIAKKPVIRNSNKKKRFRLLLVIILLIILV 138 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHH
Confidence 55566666554444333333333322223334445444444455555444444443
No 17
>TIGR02854 spore_II_GA sigma-E processing peptidase SpoIIGA. Members of this protein family are the stage II sporulation protein SpoIIGA. This protein acts as an activating protease for Sigma-E, one of several specialized sigma factors of the sporulation process in Bacillus subtilis and related endospore-forming bacteria.
Probab=73.09 E-value=25 Score=31.67 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 023789 104 IHLVVNMTSLMLVSYRLEQEFGFARIAPLYL 134 (277)
Q Consensus 104 ~HLl~N~~~l~~~G~~lE~~~G~~~~l~lyl 134 (277)
..+++|.+.|+..+..+.+....+|.++--+
T Consensus 11 ~Nf~~d~~LL~~t~~~lk~~~~~~Rll~ga~ 41 (288)
T TIGR02854 11 ENFIIDYFLLYLTARTLKDKVSQWRLLLAAL 41 (288)
T ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 5788999999999999999888888754433
No 18
>PF04892 VanZ: VanZ like family ; InterPro: IPR006976 This entry represents a conserved sequence region found in the VanZ protein and also several phosphotransbutyrylases. VanZ confers low-level resistance to the glycopeptide antibiotic teicoplanin (Te). Analysis of cytoplasmic peptidoglycan precursors, accumulated in the presence of ramoplanin, showed that VanZ-mediated Te resistance does not involve incorporation of a substituent of D-alanine into the peptidoglycan precursors [].
Probab=72.93 E-value=41 Score=25.91 Aligned_cols=40 Identities=33% Similarity=0.278 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCC--CCchhHHHHHHHHHHHHHHHHHHhhcc
Q 023789 194 VIALNLAFGFIPG--VDGVDNLAHIGGFASGVLLGFILFLRP 233 (277)
Q Consensus 194 ~~~~~~~~~~~~~--~~~vs~~aHlgG~l~G~l~g~~~~~~~ 233 (277)
.+..+....+.|. .+-.|......|...|.+....+.++.
T Consensus 89 sl~iE~~Q~~~~~r~~d~~Dv~~n~~G~~lG~~l~~~~~~~~ 130 (133)
T PF04892_consen 89 SLFIELIQLFLPGRSFDIDDVLANTLGALLGYLLYRLIRKRW 130 (133)
T ss_pred HHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555556653 234577899999999999877766543
No 19
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=65.13 E-value=93 Score=27.89 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHH
Q 023789 104 IHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCL 146 (277)
Q Consensus 104 ~HLl~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l 146 (277)
..+++|.+.|+..+..+.+....+|.++ ++.+|++.+++
T Consensus 11 ~N~~md~~lL~~t~~~~~~~~~~~Rll~----~A~~Gal~~~~ 49 (293)
T PF03419_consen 11 VNFLMDYFLLWLTARLLKRRASRWRLLL----GAAIGALYSLL 49 (293)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHH----HHHHHHHHHHH
Confidence 4688999999999999999998888754 44444444443
No 20
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.61 E-value=11 Score=27.93 Aligned_cols=36 Identities=14% Similarity=0.126 Sum_probs=29.8
Q ss_pred hccccccccccCCCccchHHHHHHHHHHHHHHHhhc
Q 023789 241 KYIAAGYDAKHRQPKYMHYQQLCWIIALILLVLGYI 276 (277)
Q Consensus 241 ~~~~~~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~ 276 (277)
+++.-..|++.+|+-.|.+|.+..+.++|.++.||.
T Consensus 10 ~kL~~~iDf~gQkkaEr~~q~ilti~aiVg~i~Gf~ 45 (101)
T KOG4112|consen 10 RKLVFPIDFPGQKKAERFQQLILTIGAIVGFIYGFA 45 (101)
T ss_pred HhCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555677789999999999999999999999984
No 21
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=54.28 E-value=59 Score=21.20 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhch-hHHHHHHHHHHHHHHHHHH
Q 023789 105 HLVVNMTSLMLVSYRLEQEFGF-ARIAPLYLLSGFGGSLLSC 145 (277)
Q Consensus 105 HLl~N~~~l~~~G~~lE~~~G~-~~~l~lyl~~gi~g~l~~~ 145 (277)
.++.+++.-..+|..+++.+++ ..+..+.++-|+.+++-..
T Consensus 9 ~~~~~i~~g~~~G~~lD~~~~t~p~~~~~g~llG~~~g~~~~ 50 (55)
T PF09527_consen 9 TMAAPILVGFFLGYWLDKWFGTSPWFTLIGLLLGIAAGFYNV 50 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHH
Confidence 5677788888999999999999 5566666666777666544
No 22
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]
Probab=53.29 E-value=12 Score=32.18 Aligned_cols=73 Identities=25% Similarity=0.203 Sum_probs=52.4
Q ss_pred hhhcCCceeeeecccccCChhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcCCCCccccccHHHH
Q 023789 84 IVRKNQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLHHKGKKEIVSVGASGAL 163 (277)
Q Consensus 84 i~~~gq~wrllTs~F~H~~~~HLl~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~~~~~~vGaSG~i 163 (277)
+-..|++++++++.++|....|...+... ..+...+++...+..+++.... +. ...++.++-+
T Consensus 134 ~GASG~i~gllga~~~~~~~~~~~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~~---~~-~~~va~~aHl 196 (228)
T COG0705 134 LGASGAIFGLLGAYFLLFPFARILLLFLS-------------LPRPALILILIWLLYSLFSGAG---SF-GPSVAWSAHL 196 (228)
T ss_pred cchhHHHHHHHHHHHHHccccchhhhhcc-------------CchhHHHHHHHHHHHHHHHHhc---CC-chHHHHHHHH
Confidence 34578888888888888888887777655 4455566677777777766655 22 2678899999
Q ss_pred HHHHHHHHHH
Q 023789 164 FGLLGTMLSE 173 (277)
Q Consensus 164 ~Gl~g~~~~~ 173 (277)
.|+++..+..
T Consensus 197 ~G~i~G~l~~ 206 (228)
T COG0705 197 GGLIGGLLLA 206 (228)
T ss_pred HHHHHHHHHH
Confidence 9999777543
No 23
>COG4452 CreD Inner membrane protein involved in colicin E2 resistance [Defense mechanisms]
Probab=51.85 E-value=2.1e+02 Score=26.96 Aligned_cols=113 Identities=22% Similarity=0.183 Sum_probs=61.8
Q ss_pred HHHHhhchhHHHHHHHHHHHHHHHHHHHhhc----CCCCccccccHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 023789 119 RLEQEFGFARIAPLYLLSGFGGSLLSCLHHK----GKKEIVSVGASGALFGLLGTMLSELIANWTIYANKCTSLSVLGSV 194 (277)
Q Consensus 119 ~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~----~~~~~~~vGaSG~i~Gl~g~~~~~~~~~~~~~~~~~~~l~~~~~~ 194 (277)
.+|-.-|.+--..-|++-|+.=.+++++.-. ......++=||.++.++.+.++.....+|+. .....+.+.
T Consensus 314 ifE~lt~~~~Hp~QY~LVGlsLv~FYLLLLaLsEHiGFt~Ayl~aSla~a~l~~~YL~avl~~~~~-----g~~f~~~L~ 388 (443)
T COG4452 314 IFEVLTGQRLHPMQYLLVGLSLVMFYLLLLALSEHIGFTVAYLIASLAGALLNGIYLQAVLRGWRN-----GLLFFLALL 388 (443)
T ss_pred hhhhhcccccchHHHHHHHHHHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHhhhhh-----hHHHHHHHH
Confidence 4576667777778888888777777665422 1223345568888999999887655444322 222333334
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHH-HHHHHHHHHHhhcccCCccch
Q 023789 195 IALNLAFGFIPGVDGVDNLAHIGGF-ASGVLLGFILFLRPQYGYVSE 240 (277)
Q Consensus 195 ~~~~~~~~~~~~~~~vs~~aHlgG~-l~G~l~g~~~~~~~~~~~~~~ 240 (277)
....+.++++.. -++ |-+.|. +.=.+++-.+...++.+|..-
T Consensus 389 ~lygvm~glL~~---edy-ALL~Gs~llf~~LaavM~lTRklDwy~~ 431 (443)
T COG4452 389 LLYGVMFGLLNS---EDY-ALLLGSLLLFVALAAVMFLTRKLDWYQV 431 (443)
T ss_pred HHHHHHHHHhhh---hHH-HHHHhhHHHHHHHHHHHheeeecchhhc
Confidence 444555565543 333 333333 222233334445555666654
No 24
>PRK10720 uracil transporter; Provisional
Probab=44.05 E-value=1.4e+02 Score=28.43 Aligned_cols=28 Identities=18% Similarity=0.051 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCccch
Q 023789 213 LAHIGGFASGVLLGFILFLRPQYGYVSE 240 (277)
Q Consensus 213 ~aHlgG~l~G~l~g~~~~~~~~~~~~~~ 240 (277)
.+-..|.++|+++-..+..++|++.+++
T Consensus 389 ~gi~~g~~~ai~Lnlll~~~~~~~~~~~ 416 (428)
T PRK10720 389 KGMALATIVGIGLSLIFKLISKLRPEEE 416 (428)
T ss_pred CcHHHHHHHHHHHHHHhcccccccCCcc
Confidence 3445567777777766665555555444
No 25
>COG2056 Predicted permease [General function prediction only]
Probab=43.69 E-value=44 Score=31.24 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHhhcccCCccch
Q 023789 215 HIGGFASGVLLGFILFLRPQYGYVSE 240 (277)
Q Consensus 215 HlgG~l~G~l~g~~~~~~~~~~~~~~ 240 (277)
---|+++|++.+.+...|+.+.|+.+
T Consensus 197 p~lgMi~GLl~ai~~~YrKpReY~~~ 222 (444)
T COG2056 197 PGLGMIVGLLLAIFVSYRKPREYQTN 222 (444)
T ss_pred HHHHHHHHHHHHHHHhhcCCcccccc
Confidence 34588999999988855555555543
No 26
>PF13105 DUF3959: Protein of unknown function (DUF3959)
Probab=42.81 E-value=1.6e+02 Score=24.85 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc
Q 023789 212 NLAHIGGFASGVLLGFILFLRPQ 234 (277)
Q Consensus 212 ~~aHlgG~l~G~l~g~~~~~~~~ 234 (277)
..--++|++.|-+++..+.++..
T Consensus 133 lllLvgGli~GGLlA~~~hRke~ 155 (239)
T PF13105_consen 133 LLLLVGGLILGGLLAMLIHRKEK 155 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 34567899999888887765543
No 27
>PF07301 DUF1453: Protein of unknown function (DUF1453); InterPro: IPR009916 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown. Members of this family seem to be found exclusively in the Order Bacillales.
Probab=41.99 E-value=1.9e+02 Score=23.47 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=23.9
Q ss_pred hcCCCCchhHHHHHHHHHHHHHHHHHHhhcccC
Q 023789 203 FIPGVDGVDNLAHIGGFASGVLLGFILFLRPQY 235 (277)
Q Consensus 203 ~~~~~~~vs~~aHlgG~l~G~l~g~~~~~~~~~ 235 (277)
..| ..++.+.--+.+++.|.++++.+.+..++
T Consensus 49 ~~P-~~~~~~~~~l~A~~~G~lFs~~Li~ts~f 80 (148)
T PF07301_consen 49 VFP-FFRPPWLEVLEAFLVGALFSYPLIKTSKF 80 (148)
T ss_pred hCc-cccchHHHHHHHHHHHHHHHHHHHHhceE
Confidence 345 34577778889999999999888766544
No 28
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=36.01 E-value=3.2e+02 Score=24.44 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=13.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHhh
Q 023789 209 GVDNLAHIGGFASGVLLGFILFL 231 (277)
Q Consensus 209 ~vs~~aHlgG~l~G~l~g~~~~~ 231 (277)
..++..-+.+...|++....+.-
T Consensus 161 ~~~~~~ll~sl~~g~l~~~il~~ 183 (284)
T TIGR00751 161 RVDWVGILPAVATGLLACAVLNI 183 (284)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 35555556666677766555443
No 29
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=35.61 E-value=1.8e+02 Score=21.55 Aligned_cols=13 Identities=15% Similarity=0.066 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHH
Q 023789 216 IGGFASGVLLGFI 228 (277)
Q Consensus 216 lgG~l~G~l~g~~ 228 (277)
..|.++|+...-+
T Consensus 65 ~aG~laGlAaTGL 77 (93)
T PF06946_consen 65 WAGGLAGLAATGL 77 (93)
T ss_pred HHHHHhhhhhhhH
Confidence 5577788776544
No 30
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=35.00 E-value=4.2e+02 Score=25.46 Aligned_cols=59 Identities=22% Similarity=0.140 Sum_probs=36.9
Q ss_pred HHHHhhchhHHHHHHHHHHHHHHHHHHHhhc----CCCCccccccHHHHHHHHHHHHHHHHHh
Q 023789 119 RLEQEFGFARIAPLYLLSGFGGSLLSCLHHK----GKKEIVSVGASGALFGLLGTMLSELIAN 177 (277)
Q Consensus 119 ~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~----~~~~~~~vGaSG~i~Gl~g~~~~~~~~~ 177 (277)
.+|-.-+.+--.+=|++-|+.=.+++.++-. .+....+.=||.++.++++.+....+.+
T Consensus 314 lfE~~~~~~iHpiQY~LVGlAl~lFYlLLLSlSEhi~F~~AYliAa~a~i~Li~~Y~~~vl~~ 376 (430)
T PF06123_consen 314 LFELLSKLRIHPIQYLLVGLALVLFYLLLLSLSEHIGFNLAYLIAALACIGLISLYLSSVLKS 376 (430)
T ss_pred HHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3465555555667788888777777765532 1122344557788888888886655443
No 31
>PF04973 NMN_transporter: Nicotinamide mononucleotide transporter; InterPro: IPR006419 The PnuC protein of Escherichia coli is membrane protein responsible for nicotinamide mononucleotide transport, subject to regulation by interaction with the NadR (also called NadI) protein (see IPR006417 from INTERPRO). The extreme N- and C-terminal regions are poorly conserved. ; GO: 0006810 transport, 0016020 membrane
Probab=34.77 E-value=2.6e+02 Score=22.99 Aligned_cols=11 Identities=27% Similarity=0.597 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q 023789 160 SGALFGLLGTM 170 (277)
Q Consensus 160 SG~i~Gl~g~~ 170 (277)
.|++.|++...
T Consensus 6 ~~~i~g~l~v~ 16 (181)
T PF04973_consen 6 IASILGLLCVI 16 (181)
T ss_pred HHHHHHHHHHH
Confidence 34445554444
No 32
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=34.00 E-value=14 Score=29.14 Aligned_cols=17 Identities=29% Similarity=0.604 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHhhc
Q 023789 216 IGGFASGVLLGFILFLR 232 (277)
Q Consensus 216 lgG~l~G~l~g~~~~~~ 232 (277)
+.|+++|+++|+++.+.
T Consensus 3 ~i~lvvG~iiG~~~~r~ 19 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRL 19 (128)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35666666666665543
No 33
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=33.82 E-value=4.6e+02 Score=25.85 Aligned_cols=26 Identities=15% Similarity=-0.089 Sum_probs=17.6
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHhhc
Q 023789 100 HAGIIHLVVNMTSLMLVSYRLEQEFG 125 (277)
Q Consensus 100 H~~~~HLl~N~~~l~~~G~~lE~~~G 125 (277)
+.+-.+-.--++.-|.||..+|..-|
T Consensus 94 ~is~D~r~q~lli~~~Fg~flEgaaG 119 (522)
T PF02652_consen 94 SISPDRRVQVLLIAFGFGAFLEGAAG 119 (522)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhhhc
Confidence 33334455556788899999997765
No 34
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=32.94 E-value=3.6e+02 Score=24.12 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=16.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcc
Q 023789 209 GVDNLAHIGGFASGVLLGFILFLRP 233 (277)
Q Consensus 209 ~vs~~aHlgG~l~G~l~g~~~~~~~ 233 (277)
..++..=+.++..|++..-.+.-++
T Consensus 158 ~~~~~~~l~sl~~gl~~~~iL~~Nn 182 (285)
T TIGR02235 158 SFSLIPWKASILVGLATTLILFCSH 182 (285)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 4566666777888877665555433
No 35
>PRK11715 inner membrane protein; Provisional
Probab=32.03 E-value=4.7e+02 Score=25.16 Aligned_cols=58 Identities=22% Similarity=0.111 Sum_probs=36.3
Q ss_pred HHHhhchhHHHHHHHHHHHHHHHHHHHhhc----CCCCccccccHHHHHHHHHHHHHHHHHh
Q 023789 120 LEQEFGFARIAPLYLLSGFGGSLLSCLHHK----GKKEIVSVGASGALFGLLGTMLSELIAN 177 (277)
Q Consensus 120 lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~----~~~~~~~vGaSG~i~Gl~g~~~~~~~~~ 177 (277)
+|-.-+.+--..=|++-|+.-.++++++-. .+....++=||.++.++++.++.....+
T Consensus 321 fE~~~~~~iHpiQYlLVGlAl~lFYLLLLSlSEHigF~~AYliAa~a~v~li~~Y~~~vl~~ 382 (436)
T PRK11715 321 FELLKKLRIHPVQYLLVGLALVLFYLLLLSLSEHIGFTLAYLIAALACVLLIGFYLSAVLRS 382 (436)
T ss_pred HHHhcCceecHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455545555567788888777777766532 1122344557788888888887665544
No 36
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=31.15 E-value=2e+02 Score=21.42 Aligned_cols=44 Identities=23% Similarity=0.481 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHHHHHH------HHHhhchhHHHHHHHHHHHHHHHHHHHh
Q 023789 103 IIHLVVNMTSLMLVSYR------LEQEFGFARIAPLYLLSGFGGSLLSCLH 147 (277)
Q Consensus 103 ~~HLl~N~~~l~~~G~~------lE~~~G~~~~l~lyl~~gi~g~l~~~l~ 147 (277)
+.-++.-..++..+|-. .|.++|+ |.+.+|++.|+...+.++..
T Consensus 3 ~~Giiigi~tFliIG~fHpiVIk~EYyfg~-~~W~~FL~~Gi~~~~~Sl~~ 52 (94)
T PF14898_consen 3 FTGIIIGIATFLIIGLFHPIVIKGEYYFGT-RIWPIFLLAGIACIIASLFV 52 (94)
T ss_pred hhhHHHHHHHHHHHHccCeEEEEEEEecCC-CcHHHHHHHHHHHHHHHHHH
Confidence 34455566667777665 4888988 57889999999988888776
No 37
>PTZ00101 rhomboid-1 protease; Provisional
Probab=29.22 E-value=4.2e+02 Score=23.75 Aligned_cols=13 Identities=31% Similarity=0.498 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHh
Q 023789 218 GFASGVLLGFILF 230 (277)
Q Consensus 218 G~l~G~l~g~~~~ 230 (277)
|=++|++.|..+-
T Consensus 223 aHlGG~i~G~llg 235 (278)
T PTZ00101 223 GHLGGLLSGISMG 235 (278)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555443
No 38
>PRK11677 hypothetical protein; Provisional
Probab=28.96 E-value=24 Score=28.14 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 023789 212 NLAHIGGFASGVLLGFILFLR 232 (277)
Q Consensus 212 ~~aHlgG~l~G~l~g~~~~~~ 232 (277)
|..=+.|+++|+++|+++.+.
T Consensus 3 W~~a~i~livG~iiG~~~~R~ 23 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRF 23 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 344456777777777766553
No 39
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.87 E-value=60 Score=25.64 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcc
Q 023789 210 VDNLAHIGGFASGVLLGFILFLRP 233 (277)
Q Consensus 210 vs~~aHlgG~l~G~l~g~~~~~~~ 233 (277)
..|..-+.|+++|+++|+++.+-.
T Consensus 6 ~~W~~a~igLvvGi~IG~li~Rlt 29 (138)
T COG3105 6 MTWEYALIGLVVGIIIGALIARLT 29 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456777888889998888877543
No 40
>PTZ00127 cytochrome c oxidase assembly protein; Provisional
Probab=28.67 E-value=4.9e+02 Score=24.62 Aligned_cols=14 Identities=21% Similarity=-0.166 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHH
Q 023789 212 NLAHIGGFASGVLL 225 (277)
Q Consensus 212 ~~aHlgG~l~G~l~ 225 (277)
...|+++.+.=+.+
T Consensus 218 la~Hll~al~i~~~ 231 (403)
T PTZ00127 218 LAAHLFNAFVIYSL 231 (403)
T ss_pred HHHHHHHHHHHHHH
Confidence 57999977755433
No 41
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=28.07 E-value=2.8e+02 Score=26.89 Aligned_cols=12 Identities=17% Similarity=0.277 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q 023789 217 GGFASGVLLGFI 228 (277)
Q Consensus 217 gG~l~G~l~g~~ 228 (277)
-++..|..+|.+
T Consensus 134 p~l~lGqaiGRi 145 (460)
T PRK13108 134 PGVVLAQAIGRL 145 (460)
T ss_pred HHHHHHHHHHHH
Confidence 355555555543
No 42
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=26.82 E-value=55 Score=28.00 Aligned_cols=27 Identities=15% Similarity=0.249 Sum_probs=21.8
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHhcC
Q 023789 9 EQWRAWLTPVIFVVCIIMFVYTMHVNN 35 (277)
Q Consensus 9 ~~~~p~vt~~li~i~v~vf~~~~~~~~ 35 (277)
++...|.|++++.+|+++|++..++-+
T Consensus 148 Rr~STwgT~~lmgvNvllFl~~~~~~E 174 (207)
T PF05546_consen 148 RRASTWGTWGLMGVNVLLFLVAQLLVE 174 (207)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344578999999999999999876543
No 43
>PF09858 DUF2085: Predicted membrane protein (DUF2085); InterPro: IPR019206 This entry, found in various hypothetical prokaryotic proteins, has no known function.
Probab=26.70 E-value=2.6e+02 Score=20.58 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=12.9
Q ss_pred CchhHHHHHHHHHHHHHHHH
Q 023789 208 DGVDNLAHIGGFASGVLLGF 227 (277)
Q Consensus 208 ~~vs~~aHlgG~l~G~l~g~ 227 (277)
++.+..=-+.|+++|+..+.
T Consensus 72 es~N~lR~iTG~l~G~~~~~ 91 (93)
T PF09858_consen 72 ESNNLLRLITGLLFGLGLGL 91 (93)
T ss_pred cCCChhHHHhhHHHHhHHhe
Confidence 33445566778888877654
No 44
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=26.13 E-value=51 Score=23.00 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 023789 213 LAHIGGFASGVLLGFILFLRPQ 234 (277)
Q Consensus 213 ~aHlgG~l~G~l~g~~~~~~~~ 234 (277)
.+-+.|.++|.+.|+++.+++.
T Consensus 3 ~g~l~Ga~~Ga~~glL~aP~sG 24 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFAPKSG 24 (74)
T ss_pred HHHHHHHHHHHHHHHHhCCCCc
Confidence 4567788888888888877543
No 45
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=25.43 E-value=4.8e+02 Score=23.10 Aligned_cols=10 Identities=20% Similarity=0.401 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 023789 160 SGALFGLLGT 169 (277)
Q Consensus 160 SG~i~Gl~g~ 169 (277)
...+.|++|+
T Consensus 57 ~~~l~gilGA 66 (269)
T PRK12437 57 IAVPIAILGA 66 (269)
T ss_pred HHHHHHHHHH
Confidence 3334444444
No 46
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=24.53 E-value=3.8e+02 Score=25.60 Aligned_cols=43 Identities=12% Similarity=0.126 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHh
Q 023789 104 IHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLH 147 (277)
Q Consensus 104 ~HLl~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~ 147 (277)
.+++.-++.=..+|..-|+ +|++..+..-++..+++++.+.+.
T Consensus 126 ~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a 168 (521)
T KOG0255|consen 126 LFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFA 168 (521)
T ss_pred HHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444555555555 999998887777777766655544
No 47
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=23.10 E-value=1.8e+02 Score=24.39 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=11.2
Q ss_pred CCCccchHHHHHHHHHHHHHHHh
Q 023789 252 RQPKYMHYQQLCWIIALILLVLG 274 (277)
Q Consensus 252 ~k~~~~~~~~~~~~~~~~~~~~~ 274 (277)
++++++++.+...+-++++++.+
T Consensus 75 ~~~~~~~~~~~l~~~~~ll~~~~ 97 (209)
T PF06912_consen 75 RRRRRRWYRILLLLEAILLLIAA 97 (209)
T ss_pred ccchhHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555544443
No 48
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=22.19 E-value=99 Score=19.97 Aligned_cols=17 Identities=35% Similarity=0.956 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 023789 259 YQQLCWIIALILLVLGYI 276 (277)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~ 276 (277)
.+|- |++.++++++||.
T Consensus 3 iawy-wivli~lv~~gy~ 19 (54)
T PF13260_consen 3 IAWY-WIVLIVLVVVGYF 19 (54)
T ss_pred HHHH-HHHHHHHHHHHHH
Confidence 3455 7788889999985
No 49
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=21.95 E-value=6e+02 Score=23.05 Aligned_cols=16 Identities=6% Similarity=-0.022 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhhc
Q 023789 217 GGFASGVLLGFILFLR 232 (277)
Q Consensus 217 gG~l~G~l~g~~~~~~ 232 (277)
.++..|++.+-.+.-+
T Consensus 194 ~slp~g~l~~~ill~N 209 (317)
T PRK13387 194 ISLPIIFTIANIMLAN 209 (317)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5777777776655443
No 50
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=21.28 E-value=5.6e+02 Score=22.45 Aligned_cols=25 Identities=12% Similarity=0.091 Sum_probs=16.7
Q ss_pred cccCCCccchHHHHHHHHHHHHHHH
Q 023789 249 AKHRQPKYMHYQQLCWIIALILLVL 273 (277)
Q Consensus 249 ~~r~k~~~~~~~~~~~~~~~~~~~~ 273 (277)
|....+-.+..+|...+++.+++-.
T Consensus 120 p~~~~rs~~~v~W~Lqligl~lI~~ 144 (249)
T PF10225_consen 120 PPVDPRSRNFVKWALQLIGLVLIYF 144 (249)
T ss_pred CCccHhHHHHHHHHHHHHHHHHHHH
Confidence 3345555677888888888766543
No 51
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=21.19 E-value=37 Score=22.97 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=8.3
Q ss_pred ccchHHHHHHHHHH-HHHHH
Q 023789 255 KYMHYQQLCWIIAL-ILLVL 273 (277)
Q Consensus 255 ~~~~~~~~~~~~~~-~~~~~ 273 (277)
|.++.|+++.++.+ ++++.
T Consensus 34 ~~~~~~~i~~~~~i~~l~v~ 53 (59)
T PF09889_consen 34 RMRKTQYIFFGIFILFLAVW 53 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33345555444444 34443
No 52
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=20.74 E-value=3.7e+02 Score=20.19 Aligned_cols=42 Identities=12% Similarity=0.074 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhchh-HHHHHHHHHHHHHHHHHH
Q 023789 104 IHLVVNMTSLMLVSYRLEQEFGFA-RIAPLYLLSGFGGSLLSC 145 (277)
Q Consensus 104 ~HLl~N~~~l~~~G~~lE~~~G~~-~~l~lyl~~gi~g~l~~~ 145 (277)
++++.-.+.-.++|..+.+.+++. .+.+.+++.|++.++...
T Consensus 50 ~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~n~ 92 (100)
T TIGR02230 50 WSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCLNA 92 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 466777777788899999999863 455556666666655543
No 53
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=20.69 E-value=3.6e+02 Score=22.25 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=24.9
Q ss_pred HHHhcCCCCchhHHHHHHHHHHHHHHHHHHhh-cccCCccc
Q 023789 200 AFGFIPGVDGVDNLAHIGGFASGVLLGFILFL-RPQYGYVS 239 (277)
Q Consensus 200 ~~~~~~~~~~vs~~aHlgG~l~G~l~g~~~~~-~~~~~~~~ 239 (277)
...+++..++-++.=++.|.+.|.+....+.+ -+..+|..
T Consensus 37 lI~lFg~~~~~nf~~NllGVil~~~~~~~~l~~~k~~p~m~ 77 (165)
T PF11286_consen 37 LIALFGGESGGNFHWNLLGVILGLLLTSALLRQLKTHPFMT 77 (165)
T ss_pred HHHHcCCCCCCceeeeHHHHHHHHHHHHHHHHHHccChHHH
Confidence 34455544555666789999999887655443 34455554
No 54
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=20.64 E-value=8.7e+02 Score=24.40 Aligned_cols=42 Identities=24% Similarity=0.225 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHh
Q 023789 105 HLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLH 147 (277)
Q Consensus 105 HLl~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~ 147 (277)
..+.+....-.+ ..+-+.+|++.++..-.+.+++|.+...-.
T Consensus 87 ~~l~~av~~~~~-G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA 128 (599)
T PF06609_consen 87 WTLASAVSFPFV-GRLSDLFGRRYFFIIGSLLGVVGSIVCATA 128 (599)
T ss_pred HHHHHHHHHHhh-HHHHHHhcchHHHHHHHHHHHhHHHHhhcC
Confidence 455555555544 556889999999888888888887766544
No 55
>PF10966 DUF2768: Protein of unknown function (DUF2768); InterPro: IPR020076 This entry contains proteins with no known function.
Probab=20.45 E-value=60 Score=21.91 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=18.5
Q ss_pred cCCCccchHHHHHHHHHHHHHHHhh
Q 023789 251 HRQPKYMHYQQLCWIIALILLVLGY 275 (277)
Q Consensus 251 r~k~~~~~~~~~~~~~~~~~~~~~~ 275 (277)
|.|-|.+..+++...++.++++++.
T Consensus 23 R~Klk~~~lk~i~~~vAy~lli~~g 47 (58)
T PF10966_consen 23 RYKLKGKFLKFIVSLVAYILLIVSG 47 (58)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHH
Confidence 5677778888888888887766653
No 56
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=20.42 E-value=1.1e+02 Score=18.37 Aligned_cols=12 Identities=0% Similarity=0.254 Sum_probs=6.0
Q ss_pred cCCCccchHHHH
Q 023789 251 HRQPKYMHYQQL 262 (277)
Q Consensus 251 r~k~~~~~~~~~ 262 (277)
|+|+++++...+
T Consensus 4 kkKS~fekiT~v 15 (35)
T PF13253_consen 4 KKKSTFEKITMV 15 (35)
T ss_pred ccccHHHHHHHH
Confidence 455555555443
No 57
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=20.28 E-value=6.9e+02 Score=23.04 Aligned_cols=30 Identities=23% Similarity=0.485 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcccCCccc
Q 023789 210 VDNLAHIGGFASGVLLGFILFLRPQYGYVS 239 (277)
Q Consensus 210 vs~~aHlgG~l~G~l~g~~~~~~~~~~~~~ 239 (277)
.-...++.|+..+-...+.+..-+.++|.+
T Consensus 267 ~L~~~Nl~~I~la~~~vf~~~g~~p~~~~~ 296 (325)
T TIGR00341 267 ILTLINVAGLMAGSLAGVYVYGIRAYRYYK 296 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcchhhh
Confidence 344567778777766666555444444433
No 58
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=20.01 E-value=5.5e+02 Score=21.83 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHhcCC
Q 023789 190 VLGSVIALNLAFGFIPG 206 (277)
Q Consensus 190 ~~~~~~~~~~~~~~~~~ 206 (277)
.+.+|++.....+++|.
T Consensus 171 sm~lWi~v~i~t~~lPt 187 (226)
T COG4858 171 SMLLWIAVMIATVFLPT 187 (226)
T ss_pred HHHHHHHHHHHHhhCCC
Confidence 44556666666677775
Done!