Query 023789
Match_columns 277
No_of_seqs 230 out of 1769
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 12:49:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023789.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023789hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nr9_A Protein GLPG homolog; i 100.0 4.9E-33 1.7E-37 235.6 10.0 185 8-234 4-188 (196)
2 2xov_A Rhomboid protease GLPG; 100.0 4.6E-31 1.6E-35 220.8 18.3 177 11-231 2-180 (181)
3 3qe7_A Uracil permease; uracil 30.8 76 0.0026 28.9 5.9 23 209-231 386-408 (429)
4 4aps_A DI-OR tripeptide H+ sym 16.0 5.4E+02 0.019 22.4 13.2 39 106-144 64-102 (491)
5 3gia_A Uncharacterized protein 13.0 5E+02 0.017 22.6 7.3 18 12-29 221-238 (444)
6 3o7q_A L-fucose-proton symport 12.0 6.6E+02 0.022 21.2 11.9 28 117-144 81-108 (438)
7 3mp7_B Preprotein translocase 11.6 1.7E+02 0.0059 18.9 2.7 25 252-276 23-50 (61)
8 2l2t_A Receptor tyrosine-prote 10.0 3.1E+02 0.011 16.4 3.2 7 217-223 14-20 (44)
9 2ww9_B Protein transport prote 9.3 2.1E+02 0.0072 19.6 2.5 25 252-276 40-67 (80)
10 2wwb_B SEC61gamma, protein tra 7.2 1.5E+02 0.0053 19.6 1.1 27 250-276 23-50 (68)
No 1
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.98 E-value=4.9e-33 Score=235.62 Aligned_cols=185 Identities=18% Similarity=0.269 Sum_probs=133.0
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHhhhhcccccccCcccccCCCCHHHHHhcCCCchhhhhhc
Q 023789 8 PEQWRAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGPSISTLRDLGGLDRNLIVRK 87 (277)
Q Consensus 8 ~~~~~p~vt~~li~i~v~vf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~L~~~Ga~~~~~i~~~ 87 (277)
-+.++|++|..++++|+++|+++..... .+..+.+++ .|. .+.+
T Consensus 4 ~~~~~~pvt~~li~~~v~vfll~~~~~~-------------~~~~~~~~~----------------------~p~-~~~~ 47 (196)
T 2nr9_A 4 FLAQQGKITLILTALCVLIYIAQQLGFE-------------DDIMYLMHY----------------------PAY-EEQD 47 (196)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHHHHTTCH-------------HHHHHHHSC----------------------CCS-GGGG
T ss_pred cccccccHHHHHHHHHHHHHHHHHHcCc-------------HHHHHhhcC----------------------CHh-hccc
Confidence 3456678999999999999998764210 112233333 232 2368
Q ss_pred CCceeeeecccccCChhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcCCCCccccccHHHHHHHH
Q 023789 88 NQKYRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGLL 167 (277)
Q Consensus 88 gq~wrllTs~F~H~~~~HLl~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~~~~~~vGaSG~i~Gl~ 167 (277)
+||||++|++|+|.|+.|+++||+.++.+|..+|+.+|+++++.+|+.+++.|++.++++. ++ .++||||++||++
T Consensus 48 ~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~G~~~~l~~yl~~~~~~~l~~~~~~---~~-~~vGaSGai~gl~ 123 (196)
T 2nr9_A 48 SEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVS---GP-AFFGLSGVVYAVL 123 (196)
T ss_dssp GCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH---CS-CCCCSHHHHHHHH
T ss_pred CCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHhc---CC-CeeeHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998884 33 3999999999999
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhhccc
Q 023789 168 GTMLSELIANWTIYANKCTSLSVLGSVIALNLAFGFIPGVDGVDNLAHIGGFASGVLLGFILFLRPQ 234 (277)
Q Consensus 168 g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vs~~aHlgG~l~G~l~g~~~~~~~~ 234 (277)
++.+.....+......+.+......+++..++. ... ..+++|+.||++|+++|++++..+.++++
T Consensus 124 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~v~~~aHlgG~l~G~l~~~~~~~~~~ 188 (196)
T 2nr9_A 124 GYVFIRDKLNHHLFDLPEGFFTMLLVGIALGFI-SPL-FGVEMGNAAHISGLIVGLIWGFIDSKLRK 188 (196)
T ss_dssp HHHHHHHHSSTTSCCCCCSSTTTTTTTTTHHHH-SCS-SCCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchhhcchHHHHHHHHHHHHHHHH-Hhc-cCCCccHHHHHHHHHHHHHHHHHHHhccc
Confidence 987543211111111111111111122222322 110 24579999999999999999998876553
No 2
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.97 E-value=4.6e-31 Score=220.82 Aligned_cols=177 Identities=16% Similarity=0.217 Sum_probs=130.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHhhhhcccccccCcccccCCCCHHHHHhcCCCchhhhhhcCCc
Q 023789 11 WRAWLTPVIFVVCIIMFVYTMHVNNCPAKTADSHQCVLRDILGRYSFQPWKENYLLGPSISTLRDLGGLDRNLIVRKNQK 90 (277)
Q Consensus 11 ~~p~vt~~li~i~v~vf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~L~~~Ga~~~~~i~~~gq~ 90 (277)
|.|++|..++++|+++|+++..... .+..+.+++.| ....++||
T Consensus 2 ~~~pvt~~li~~~v~vf~~~~~~~~-------------~~~~~~~~~~p-----------------------~~~~~~~~ 45 (181)
T 2xov_A 2 RAGPVTWVMMIACVVVFIAMQILGD-------------QEVMLWLAWPF-----------------------DPTLKFEF 45 (181)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCH-------------HHHHHHHSSCC-----------------------SGGGTTCT
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCc-------------HHHHHhhcCCh-----------------------hhccCCCC
Confidence 5578999999999999998875321 11223333322 23468999
Q ss_pred eeeeecccccCChhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcCCCCccccccHHHHHHHHHHH
Q 023789 91 YRLLSSMWLHAGIIHLVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLSCLHHKGKKEIVSVGASGALFGLLGTM 170 (277)
Q Consensus 91 wrllTs~F~H~~~~HLl~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~~~~~~vGaSG~i~Gl~g~~ 170 (277)
||++|++|+|.|+.|+++||+.++.+|+.+|+.+|++|++.+|+.+++.+++.+.++. ++ .++||||+++|++++.
T Consensus 46 wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~~~fl~~yl~~~i~~~l~~~~~~---~~-~~vGaSGai~gl~g~~ 121 (181)
T 2xov_A 46 WRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFS---GP-WFGGLSGVVYALMGYV 121 (181)
T ss_dssp THHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH---CS-CCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc---CC-CceeHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998884 33 3899999999999987
Q ss_pred HHHHHHhhhh-hhhhHHHHHHHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHHHHHHHHHhh
Q 023789 171 LSELIANWTI-YANKCTSLSVLGSVIALNLAFGFIP-GVDGVDNLAHIGGFASGVLLGFILFL 231 (277)
Q Consensus 171 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~vs~~aHlgG~l~G~l~g~~~~~ 231 (277)
+.....+.+. ...+.+.......++.. ++.. ..+++|+.||++|+++|++++..+.|
T Consensus 122 ~~~~~~~p~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~ 180 (181)
T 2xov_A 122 WLRGERDPQSGIYLQRGLIIFALIWIVA----GWFDLFGMSMANGAHIAGLAVGLAMAFVDSL 180 (181)
T ss_dssp HHHHHHCGGGSCCCCHHHHHHHHHHHHH----HHTTSSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCcCceeeeHHHHHHHHHHHHHH----HHHHhccccchHHHHHHHHHHHHHHHHHHhc
Confidence 5422111111 11112222222233332 3221 13579999999999999999987765
No 3
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=30.84 E-value=76 Score=28.91 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=13.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHhh
Q 023789 209 GVDNLAHIGGFASGVLLGFILFL 231 (277)
Q Consensus 209 ~vs~~aHlgG~l~G~l~g~~~~~ 231 (277)
++...+-..|.+.++++-..+.+
T Consensus 386 ~~~~~gi~~~~~~ai~ln~~l~~ 408 (429)
T 3qe7_A 386 AAELKGMALATIVGIGLSLIFKL 408 (429)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHTC
T ss_pred hhccCcHHHHHHHHHHHHHHhcC
Confidence 34445556666666666555543
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=16.02 E-value=5.4e+02 Score=22.35 Aligned_cols=39 Identities=8% Similarity=-0.102 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH
Q 023789 106 LVVNMTSLMLVSYRLEQEFGFARIAPLYLLSGFGGSLLS 144 (277)
Q Consensus 106 Ll~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~ 144 (277)
.+.+++.-...|...++.+|+++.+..-.+...++.+..
T Consensus 64 ~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~ 102 (491)
T 4aps_A 64 ASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVL 102 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence 344455555555555443899998776655555554443
No 5
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=12.99 E-value=5e+02 Score=22.59 Aligned_cols=18 Identities=6% Similarity=0.148 Sum_probs=7.7
Q ss_pred cchHHHHHHHHHHHHHHH
Q 023789 12 RAWLTPVIFVVCIIMFVY 29 (277)
Q Consensus 12 ~p~vt~~li~i~v~vf~~ 29 (277)
.|..+..-+.+..++|+.
T Consensus 221 ip~ai~~~~~~~~~~y~~ 238 (444)
T 3gia_A 221 VPRAIFISILIVMFVYVG 238 (444)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 6
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=12.05 E-value=6.6e+02 Score=21.23 Aligned_cols=28 Identities=14% Similarity=-0.073 Sum_probs=18.5
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHHHH
Q 023789 117 SYRLEQEFGFARIAPLYLLSGFGGSLLS 144 (277)
Q Consensus 117 G~~lE~~~G~~~~l~lyl~~gi~g~l~~ 144 (277)
+..+-+++|+++.+.+-.+...++.+..
T Consensus 81 ~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 108 (438)
T 3o7q_A 81 AGILMKKLSYKAGIITGLFLYALGAALF 108 (438)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 3445678999998776666655555554
No 7
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=11.58 E-value=1.7e+02 Score=18.87 Aligned_cols=25 Identities=12% Similarity=0.535 Sum_probs=13.4
Q ss_pred CCCccchHH---HHHHHHHHHHHHHhhc
Q 023789 252 RQPKYMHYQ---QLCWIIALILLVLGYI 276 (277)
Q Consensus 252 ~k~~~~~~~---~~~~~~~~~~~~~~~~ 276 (277)
+|+.++=|+ +...+.++++..+||+
T Consensus 23 ~KPd~~Ef~~iak~~~iG~~i~G~iGf~ 50 (61)
T 3mp7_B 23 KKPNWATYKRAAKITGLGIILIGLIGML 50 (61)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444 4445555566666664
No 8
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=10.00 E-value=3.1e+02 Score=16.44 Aligned_cols=7 Identities=29% Similarity=0.724 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 023789 217 GGFASGV 223 (277)
Q Consensus 217 gG~l~G~ 223 (277)
+|.+.|+
T Consensus 14 ~gVVgGv 20 (44)
T 2l2t_A 14 AGVIGGL 20 (44)
T ss_dssp HHHHHHH
T ss_pred EeehHHH
Confidence 3333333
No 9
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=9.29 E-value=2.1e+02 Score=19.61 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=13.5
Q ss_pred CCCccchHHHHH---HHHHHHHHHHhhc
Q 023789 252 RQPKYMHYQQLC---WIIALILLVLGYI 276 (277)
Q Consensus 252 ~k~~~~~~~~~~---~~~~~~~~~~~~~ 276 (277)
+|+.++=|+.++ .+.+.++..+||+
T Consensus 40 ~KPdr~Ef~~iak~t~iG~~imG~IGfi 67 (80)
T 2ww9_B 40 KKPDLKEYTKIVKAVGIGFIAVGIIGYA 67 (80)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555444 4445555556654
No 10
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=7.17 E-value=1.5e+02 Score=19.59 Aligned_cols=27 Identities=22% Similarity=0.540 Sum_probs=0.0
Q ss_pred cc-CCCccchHHHHHHHHHHHHHHHhhc
Q 023789 250 KH-RQPKYMHYQQLCWIIALILLVLGYI 276 (277)
Q Consensus 250 ~r-~k~~~~~~~~~~~~~~~~~~~~~~~ 276 (277)
+| +|+.++=|+.+..+..+-.++.|++
T Consensus 23 k~~~KPdr~Ef~~iak~~~iG~~i~G~I 50 (68)
T 2wwb_B 23 KRCTKPDRKEFQKIAMATAIGFAIMGFI 50 (68)
T ss_dssp HHCCCCCTHHHHHHHHHSSHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHH
Done!