Query 023790
Match_columns 277
No_of_seqs 183 out of 1538
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 06:40:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023790.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023790hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3079 Uridylate kinase/adeny 100.0 8.2E-36 1.8E-40 249.5 21.0 173 75-249 5-193 (195)
2 PLN02459 probable adenylate ki 100.0 2.1E-35 4.6E-40 263.3 21.9 177 77-253 28-255 (261)
3 PLN02674 adenylate kinase 100.0 3.2E-35 6.8E-40 260.8 21.2 169 77-247 30-243 (244)
4 PRK14529 adenylate kinase; Pro 100.0 7.7E-33 1.7E-37 242.8 20.4 166 79-247 1-222 (223)
5 PRK13808 adenylate kinase; Pro 100.0 6.4E-33 1.4E-37 255.2 20.1 171 79-251 1-195 (333)
6 PRK14526 adenylate kinase; Pro 100.0 1.8E-32 3.9E-37 239.1 20.7 170 79-250 1-210 (211)
7 PRK14531 adenylate kinase; Pro 100.0 1.9E-32 4.2E-37 233.7 20.5 167 78-247 2-182 (183)
8 PRK14528 adenylate kinase; Pro 100.0 3.3E-32 7.1E-37 233.1 20.6 166 79-246 2-185 (186)
9 TIGR01351 adk adenylate kinase 100.0 4E-32 8.7E-37 236.5 20.7 167 80-247 1-209 (210)
10 PRK14532 adenylate kinase; Pro 100.0 5.8E-32 1.3E-36 231.0 20.7 168 79-248 1-186 (188)
11 PTZ00088 adenylate kinase 1; P 100.0 2.7E-31 5.8E-36 234.4 20.3 171 76-246 4-228 (229)
12 PRK00279 adk adenylate kinase; 100.0 3.3E-31 7.1E-36 231.5 20.0 169 79-249 1-214 (215)
13 PRK02496 adk adenylate kinase; 100.0 1.1E-30 2.5E-35 222.4 20.7 169 78-248 1-183 (184)
14 PLN02200 adenylate kinase fami 100.0 1.7E-30 3.7E-35 230.1 22.0 172 76-250 41-225 (234)
15 PRK14527 adenylate kinase; Pro 100.0 2.2E-30 4.9E-35 222.2 21.4 169 76-247 4-190 (191)
16 TIGR01359 UMP_CMP_kin_fam UMP- 100.0 2.3E-30 5.1E-35 219.7 20.0 165 80-247 1-182 (183)
17 PF00406 ADK: Adenylate kinase 100.0 7.1E-31 1.5E-35 217.0 16.0 142 83-226 1-151 (151)
18 PRK14530 adenylate kinase; Pro 100.0 5.7E-30 1.2E-34 223.7 20.8 168 77-250 2-214 (215)
19 COG0563 Adk Adenylate kinase a 100.0 1.3E-28 2.9E-33 209.4 18.6 162 79-247 1-177 (178)
20 TIGR01360 aden_kin_iso1 adenyl 100.0 3.4E-27 7.3E-32 200.4 22.0 172 77-249 2-187 (188)
21 cd01428 ADK Adenylate kinase ( 100.0 6.4E-28 1.4E-32 206.0 16.8 158 80-239 1-194 (194)
22 KOG3078 Adenylate kinase [Nucl 100.0 2E-27 4.3E-32 207.6 16.5 172 77-251 14-226 (235)
23 PLN02842 nucleotide kinase 100.0 4.6E-27 1E-31 226.0 18.9 166 82-250 1-203 (505)
24 PRK13974 thymidylate kinase; P 99.8 1.1E-17 2.5E-22 145.9 15.5 172 77-249 2-206 (212)
25 PRK03839 putative kinase; Prov 99.7 6.1E-17 1.3E-21 137.3 14.4 148 79-250 1-154 (180)
26 PRK01184 hypothetical protein; 99.7 1.4E-15 3E-20 129.3 19.1 162 78-249 1-178 (184)
27 PRK13973 thymidylate kinase; P 99.7 4.6E-16 1E-20 135.9 15.9 164 77-250 2-207 (213)
28 PRK08356 hypothetical protein; 99.7 3.3E-16 7.1E-21 134.8 14.5 162 77-249 4-192 (195)
29 PRK13949 shikimate kinase; Pro 99.7 4.2E-15 9.1E-20 125.5 16.5 152 79-247 2-169 (169)
30 COG0703 AroK Shikimate kinase 99.7 3.2E-15 7E-20 125.5 14.6 158 78-250 2-169 (172)
31 PLN02924 thymidylate kinase 99.6 1.7E-14 3.6E-19 126.8 18.0 176 69-250 7-204 (220)
32 PRK06217 hypothetical protein; 99.6 1.8E-14 3.8E-19 122.8 14.7 151 78-249 1-179 (183)
33 PRK08233 hypothetical protein; 99.6 2.6E-14 5.5E-19 120.6 14.9 166 77-251 2-179 (182)
34 PRK13975 thymidylate kinase; P 99.6 1.8E-13 3.9E-18 117.2 18.1 161 78-250 2-191 (196)
35 COG1102 Cmk Cytidylate kinase 99.6 1.5E-14 3.3E-19 119.5 10.6 158 79-251 1-174 (179)
36 PRK13948 shikimate kinase; Pro 99.6 1.1E-13 2.3E-18 118.3 15.6 158 76-249 8-175 (182)
37 COG0125 Tmk Thymidylate kinase 99.6 1.8E-13 3.8E-18 119.1 17.2 171 77-250 2-204 (208)
38 PRK13947 shikimate kinase; Pro 99.5 2.3E-13 5E-18 114.0 14.9 153 79-250 2-169 (171)
39 PRK03731 aroL shikimate kinase 99.5 1.1E-12 2.4E-17 110.1 18.3 155 79-249 3-170 (171)
40 PHA02530 pseT polynucleotide k 99.5 8.1E-14 1.8E-18 127.1 11.8 153 78-238 2-171 (300)
41 PRK13946 shikimate kinase; Pro 99.5 6.6E-13 1.4E-17 113.3 16.7 161 75-249 7-176 (184)
42 TIGR00041 DTMP_kinase thymidyl 99.5 8.5E-13 1.9E-17 112.9 17.1 156 77-243 2-195 (195)
43 PRK00698 tmk thymidylate kinas 99.5 9.1E-13 2E-17 113.3 16.5 169 77-249 2-202 (205)
44 PRK00625 shikimate kinase; Pro 99.5 5.1E-13 1.1E-17 113.2 14.3 158 79-247 1-171 (173)
45 PRK08118 topology modulation p 99.5 3.1E-13 6.8E-18 113.8 12.6 95 78-199 1-96 (167)
46 PRK00081 coaE dephospho-CoA ki 99.5 5E-13 1.1E-17 115.2 12.6 160 78-249 2-193 (194)
47 PLN02199 shikimate kinase 99.5 2.6E-12 5.6E-17 116.7 17.7 160 77-250 101-289 (303)
48 cd01672 TMPK Thymidine monopho 99.5 3E-12 6.6E-17 108.8 17.2 163 79-248 1-199 (200)
49 PRK14730 coaE dephospho-CoA ki 99.5 1.1E-12 2.3E-17 113.3 14.4 159 79-248 2-193 (195)
50 COG1936 Predicted nucleotide k 99.5 2.3E-12 5.1E-17 107.7 15.3 149 79-249 1-156 (180)
51 PRK04182 cytidylate kinase; Pr 99.4 2.3E-12 5.1E-17 108.2 14.3 157 79-250 1-174 (180)
52 PRK00131 aroK shikimate kinase 99.4 3.5E-12 7.6E-17 106.4 15.0 156 77-249 3-171 (175)
53 PRK05057 aroK shikimate kinase 99.4 3.5E-12 7.6E-17 107.9 14.8 153 77-249 3-171 (172)
54 PRK14021 bifunctional shikimat 99.4 3.8E-12 8.3E-17 125.5 17.1 162 75-251 3-178 (542)
55 KOG3347 Predicted nucleotide k 99.4 4.4E-12 9.5E-17 103.6 13.0 153 76-248 5-165 (176)
56 PRK07933 thymidylate kinase; V 99.4 3.6E-12 7.8E-17 111.5 13.5 160 79-247 1-211 (213)
57 PRK06762 hypothetical protein; 99.4 8.8E-12 1.9E-16 104.1 15.2 153 77-249 1-164 (166)
58 TIGR02173 cyt_kin_arch cytidyl 99.4 1.3E-11 2.8E-16 103.0 15.6 155 79-247 1-170 (171)
59 PRK08154 anaerobic benzoate ca 99.4 3.5E-12 7.5E-17 117.6 13.0 162 75-249 130-301 (309)
60 PRK13976 thymidylate kinase; P 99.4 1.6E-11 3.5E-16 107.1 16.1 166 79-250 1-202 (209)
61 PRK14734 coaE dephospho-CoA ki 99.4 8.2E-12 1.8E-16 108.2 13.5 160 79-249 2-194 (200)
62 PRK04040 adenylate kinase; Pro 99.4 2E-11 4.3E-16 104.8 14.8 163 78-247 2-187 (188)
63 PLN02422 dephospho-CoA kinase 99.4 2.3E-11 5E-16 107.5 14.9 160 79-250 2-195 (232)
64 PF02223 Thymidylate_kin: Thym 99.4 1.2E-11 2.5E-16 105.3 12.4 153 83-243 1-186 (186)
65 PF01202 SKI: Shikimate kinase 99.3 3.9E-11 8.4E-16 99.9 14.3 147 87-248 1-158 (158)
66 TIGR01313 therm_gnt_kin carboh 99.3 1.8E-11 3.8E-16 102.0 12.3 148 81-248 1-162 (163)
67 PRK12339 2-phosphoglycerate ki 99.3 8.1E-12 1.8E-16 108.0 10.3 163 77-247 2-195 (197)
68 COG0237 CoaE Dephospho-CoA kin 99.3 6.2E-11 1.3E-15 102.7 15.1 159 77-250 1-193 (201)
69 PRK14731 coaE dephospho-CoA ki 99.3 5.4E-11 1.2E-15 103.6 13.9 162 77-249 4-202 (208)
70 PTZ00451 dephospho-CoA kinase; 99.3 7E-11 1.5E-15 105.3 14.3 162 78-250 1-208 (244)
71 PRK07261 topology modulation p 99.3 1.4E-11 3.1E-16 104.1 8.7 96 79-199 1-96 (171)
72 cd02030 NDUO42 NADH:Ubiquinone 99.2 3.2E-10 6.9E-15 99.4 15.7 166 80-245 1-217 (219)
73 PF13671 AAA_33: AAA domain; P 99.2 4.5E-11 9.8E-16 96.8 9.5 109 80-200 1-116 (143)
74 TIGR00152 dephospho-CoA kinase 99.2 3.8E-11 8.2E-16 102.6 9.3 153 80-244 1-187 (188)
75 PRK14733 coaE dephospho-CoA ki 99.2 2E-10 4.4E-15 99.8 13.9 163 77-250 5-199 (204)
76 cd00464 SK Shikimate kinase (S 99.2 1.7E-10 3.6E-15 94.6 12.1 107 80-200 1-110 (154)
77 PRK13951 bifunctional shikimat 99.2 1.1E-10 2.4E-15 113.7 12.9 147 79-243 1-155 (488)
78 PRK09825 idnK D-gluconate kina 99.2 1.4E-10 3E-15 98.6 11.6 159 77-250 2-169 (176)
79 KOG3327 Thymidylate kinase/ade 99.2 8.9E-10 1.9E-14 93.0 15.9 167 76-250 3-196 (208)
80 PRK05541 adenylylsulfate kinas 99.2 5.6E-10 1.2E-14 94.2 14.8 159 76-250 5-173 (176)
81 TIGR03574 selen_PSTK L-seryl-t 99.2 2.2E-10 4.7E-15 102.2 12.7 150 80-249 1-169 (249)
82 PRK14732 coaE dephospho-CoA ki 99.2 1.2E-10 2.7E-15 100.6 10.8 157 81-249 2-190 (196)
83 cd00227 CPT Chloramphenicol (C 99.2 3.6E-10 7.8E-15 95.5 13.1 161 78-247 2-174 (175)
84 cd02022 DPCK Dephospho-coenzym 99.2 7.1E-11 1.5E-15 100.3 8.8 115 80-200 1-140 (179)
85 PRK10078 ribose 1,5-bisphospho 99.2 7E-10 1.5E-14 94.7 14.6 155 78-250 2-177 (186)
86 PRK03333 coaE dephospho-CoA ki 99.2 2.7E-10 5.8E-15 108.4 12.8 177 79-266 2-206 (395)
87 PRK13477 bifunctional pantoate 99.1 2.2E-10 4.7E-15 111.7 11.0 41 76-116 282-322 (512)
88 COG3265 GntK Gluconate kinase 99.1 7.1E-10 1.5E-14 90.6 12.2 155 84-250 1-160 (161)
89 PRK11545 gntK gluconate kinase 99.1 6.5E-10 1.4E-14 93.2 11.7 152 84-249 1-160 (163)
90 cd02021 GntK Gluconate kinase 99.1 6.1E-10 1.3E-14 91.3 11.3 112 80-202 1-118 (150)
91 PF13207 AAA_17: AAA domain; P 99.1 5E-11 1.1E-15 94.0 4.5 106 80-199 1-107 (121)
92 PF01121 CoaE: Dephospho-CoA k 99.1 1E-09 2.2E-14 93.7 12.0 117 79-201 1-142 (180)
93 COG0283 Cmk Cytidylate kinase 99.1 2.9E-09 6.4E-14 92.2 14.8 40 77-116 3-42 (222)
94 KOG3354 Gluconate kinase [Carb 99.1 1.2E-09 2.6E-14 90.0 11.5 155 77-249 11-188 (191)
95 PRK05537 bifunctional sulfate 99.1 1.2E-09 2.7E-14 108.2 13.9 161 76-251 390-564 (568)
96 PRK00889 adenylylsulfate kinas 99.1 2.2E-09 4.8E-14 90.4 13.4 161 76-251 2-172 (175)
97 PRK06547 hypothetical protein; 99.1 3.3E-10 7.1E-15 96.0 7.8 141 76-221 13-156 (172)
98 TIGR02322 phosphon_PhnN phosph 99.1 4.5E-09 9.9E-14 88.7 14.7 155 79-249 2-178 (179)
99 TIGR00017 cmk cytidylate kinas 99.1 1.7E-09 3.6E-14 95.0 12.3 39 78-116 2-40 (217)
100 PRK14738 gmk guanylate kinase; 99.1 5.9E-10 1.3E-14 96.9 9.2 165 75-253 10-198 (206)
101 smart00072 GuKc Guanylate kina 99.1 5.4E-10 1.2E-14 95.3 8.7 158 78-250 2-183 (184)
102 cd02020 CMPK Cytidine monophos 99.1 4.7E-10 1E-14 91.0 7.6 102 80-201 1-102 (147)
103 PRK00023 cmk cytidylate kinase 99.0 8E-09 1.7E-13 91.1 15.3 39 77-115 3-41 (225)
104 cd01673 dNK Deoxyribonucleosid 99.0 8.9E-09 1.9E-13 88.0 13.7 28 80-107 1-28 (193)
105 KOG3220 Similar to bacterial d 99.0 1.4E-08 3E-13 87.0 14.5 160 79-250 2-195 (225)
106 PRK00300 gmk guanylate kinase; 98.9 3.1E-08 6.6E-13 85.4 15.0 170 76-260 3-195 (205)
107 PRK12338 hypothetical protein; 98.9 2.9E-08 6.2E-13 91.5 15.6 173 76-250 2-205 (319)
108 PRK05480 uridine/cytidine kina 98.9 2.4E-08 5.2E-13 86.5 13.4 167 76-248 4-207 (209)
109 PRK05416 glmZ(sRNA)-inactivati 98.9 3.5E-08 7.6E-13 90.1 14.8 142 77-249 5-160 (288)
110 PRK12269 bifunctional cytidyla 98.9 1.5E-08 3.1E-13 104.5 12.6 44 73-116 29-72 (863)
111 PRK11860 bifunctional 3-phosph 98.9 2.8E-08 6E-13 100.5 14.2 166 76-249 440-655 (661)
112 PRK03846 adenylylsulfate kinas 98.9 5.2E-08 1.1E-12 84.0 13.8 159 76-251 22-194 (198)
113 PRK09518 bifunctional cytidyla 98.9 2.4E-08 5.2E-13 101.8 13.1 38 79-116 2-39 (712)
114 TIGR00455 apsK adenylylsulfate 98.9 5.6E-08 1.2E-12 82.6 13.3 153 76-247 16-184 (184)
115 TIGR01663 PNK-3'Pase polynucle 98.8 5E-08 1.1E-12 95.7 12.9 97 75-200 366-466 (526)
116 COG1428 Deoxynucleoside kinase 98.8 9.3E-08 2E-12 82.7 12.8 31 77-107 3-33 (216)
117 TIGR00235 udk uridine kinase. 98.8 1.4E-07 3.1E-12 81.7 12.9 39 75-113 3-44 (207)
118 COG2019 AdkA Archaeal adenylat 98.7 6.1E-07 1.3E-11 75.0 15.4 165 78-248 4-187 (189)
119 PRK07667 uridine kinase; Provi 98.7 5E-08 1.1E-12 83.9 8.7 140 77-221 16-178 (193)
120 PRK04220 2-phosphoglycerate ki 98.7 6.8E-07 1.5E-11 81.8 16.6 41 76-117 90-131 (301)
121 PF07931 CPT: Chloramphenicol 98.7 2.1E-07 4.6E-12 78.9 12.2 163 78-248 1-174 (174)
122 PRK06696 uridine kinase; Valid 98.7 6.3E-08 1.4E-12 85.0 9.3 39 76-114 20-63 (223)
123 TIGR03263 guanyl_kin guanylate 98.7 8.4E-08 1.8E-12 80.9 9.7 156 78-248 1-179 (180)
124 PRK05506 bifunctional sulfate 98.7 1.8E-07 3.9E-12 94.2 13.5 159 76-250 458-629 (632)
125 COG0529 CysC Adenylylsulfate k 98.7 8.3E-07 1.8E-11 74.9 13.9 164 76-253 21-195 (197)
126 KOG3877 NADH:ubiquinone oxidor 98.6 2.2E-06 4.8E-11 76.9 16.7 169 76-246 69-294 (393)
127 PF13238 AAA_18: AAA domain; P 98.6 7.6E-09 1.6E-13 81.6 0.9 110 81-202 1-112 (129)
128 cd02027 APSK Adenosine 5'-phos 98.6 3.8E-07 8.2E-12 75.2 11.0 105 80-199 1-114 (149)
129 PRK14737 gmk guanylate kinase; 98.6 6E-07 1.3E-11 76.9 12.4 158 76-250 2-185 (186)
130 COG4088 Predicted nucleotide k 98.6 1.1E-06 2.4E-11 75.9 12.7 108 78-199 1-119 (261)
131 PF01583 APS_kinase: Adenylyls 98.6 7E-07 1.5E-11 74.4 10.9 112 77-201 1-119 (156)
132 cd02024 NRK1 Nicotinamide ribo 98.6 1.5E-07 3.3E-12 80.8 7.1 36 80-115 1-37 (187)
133 COG0572 Udk Uridine kinase [Nu 98.6 5.1E-07 1.1E-11 78.8 10.3 141 76-222 6-176 (218)
134 COG0645 Predicted kinase [Gene 98.5 2.2E-06 4.7E-11 71.8 13.2 114 79-200 2-122 (170)
135 PHA03132 thymidine kinase; Pro 98.5 9.5E-07 2.1E-11 87.2 12.3 125 77-201 256-421 (580)
136 PRK12337 2-phosphoglycerate ki 98.5 2.2E-06 4.7E-11 82.6 14.4 42 76-117 253-294 (475)
137 PF06414 Zeta_toxin: Zeta toxi 98.5 1.6E-07 3.6E-12 80.9 6.2 115 76-202 13-141 (199)
138 PF03668 ATP_bind_2: P-loop AT 98.5 8.2E-06 1.8E-10 73.9 15.7 136 79-249 2-156 (284)
139 cd02019 NK Nucleoside/nucleoti 98.4 4.9E-07 1.1E-11 64.8 5.5 23 80-102 1-23 (69)
140 cd02023 UMPK Uridine monophosp 98.4 4.5E-06 9.7E-11 71.6 12.5 35 80-114 1-38 (198)
141 PTZ00301 uridine kinase; Provi 98.4 4.8E-06 1E-10 72.7 11.9 135 78-221 3-174 (210)
142 PF08433 KTI12: Chromatin asso 98.4 5.7E-06 1.2E-10 75.0 12.5 107 78-200 1-117 (270)
143 PF01591 6PF2K: 6-phosphofruct 98.3 1.8E-05 4E-10 69.6 14.3 133 76-218 10-179 (222)
144 COG0194 Gmk Guanylate kinase [ 98.3 2E-05 4.3E-10 67.2 13.2 157 77-250 3-183 (191)
145 PLN02165 adenylate isopentenyl 98.3 9.6E-06 2.1E-10 75.3 12.2 37 76-112 41-77 (334)
146 TIGR03575 selen_PSTK_euk L-ser 98.3 9.4E-06 2E-10 75.8 11.6 104 81-200 2-120 (340)
147 COG2074 2-phosphoglycerate kin 98.3 2.8E-05 6E-10 69.2 13.6 163 76-250 87-288 (299)
148 cd02028 UMPK_like Uridine mono 98.3 2.3E-06 4.9E-11 72.8 6.7 36 80-115 1-41 (179)
149 PF00625 Guanylate_kin: Guanyl 98.2 4.5E-05 9.8E-10 64.7 14.3 157 78-249 2-182 (183)
150 PRK05439 pantothenate kinase; 98.2 1.8E-05 4E-10 73.0 11.7 38 76-113 84-128 (311)
151 PHA00729 NTP-binding motif con 98.2 1.3E-05 2.7E-10 70.7 9.9 108 77-200 16-137 (226)
152 PLN02318 phosphoribulokinase/u 98.1 2.9E-05 6.2E-10 77.0 12.5 191 76-275 63-305 (656)
153 PRK09270 nucleoside triphospha 98.1 1.9E-05 4.1E-10 69.5 10.3 28 76-103 31-58 (229)
154 PRK07429 phosphoribulokinase; 98.1 4.9E-06 1.1E-10 77.4 6.8 38 76-113 6-46 (327)
155 cd02025 PanK Pantothenate kina 98.1 2.4E-05 5.2E-10 68.8 9.9 34 80-113 1-41 (220)
156 COG1660 Predicted P-loop-conta 98.1 0.0002 4.3E-09 64.0 15.5 136 79-249 2-157 (286)
157 COG4639 Predicted kinase [Gene 98.1 5.1E-05 1.1E-09 62.9 10.9 108 78-199 2-114 (168)
158 TIGR00554 panK_bact pantothena 98.1 4.5E-05 9.8E-10 69.8 11.4 38 76-113 60-104 (290)
159 PRK05800 cobU adenosylcobinami 98.0 3.1E-06 6.7E-11 71.5 3.0 35 78-112 1-37 (170)
160 PF00485 PRK: Phosphoribulokin 98.0 3.4E-05 7.4E-10 66.1 8.8 24 80-103 1-24 (194)
161 PLN02772 guanylate kinase 98.0 0.00011 2.4E-09 69.6 12.5 161 76-251 133-320 (398)
162 PF00004 AAA: ATPase family as 97.9 9.5E-06 2.1E-10 64.0 2.9 33 81-113 1-35 (132)
163 PRK06761 hypothetical protein; 97.8 0.00028 6.1E-09 64.3 12.2 32 78-109 3-34 (282)
164 cd02026 PRK Phosphoribulokinas 97.8 0.00011 2.3E-09 66.8 9.1 34 80-113 1-37 (273)
165 PLN02348 phosphoribulokinase 97.8 5.8E-05 1.3E-09 71.5 6.9 28 76-103 47-74 (395)
166 PRK15453 phosphoribulokinase; 97.8 0.00011 2.3E-09 66.9 8.2 39 76-114 3-46 (290)
167 COG3709 Uncharacterized compon 97.7 0.0016 3.4E-08 54.6 14.0 59 184-250 117-183 (192)
168 PRK12724 flagellar biosynthesi 97.7 0.00026 5.6E-09 67.8 10.7 93 77-179 222-324 (432)
169 TIGR02881 spore_V_K stage V sp 97.7 0.00027 5.8E-09 63.5 10.0 27 76-102 40-66 (261)
170 PF13189 Cytidylate_kin2: Cyti 97.7 0.00037 8.1E-09 59.1 9.6 113 80-200 1-132 (179)
171 KOG0733 Nuclear AAA ATPase (VC 97.7 0.00027 5.8E-09 69.8 9.6 140 53-199 197-369 (802)
172 PRK00091 miaA tRNA delta(2)-is 97.6 4.5E-05 9.7E-10 70.4 4.0 36 77-112 3-38 (307)
173 PTZ00322 6-phosphofructo-2-kin 97.6 0.00029 6.2E-09 71.6 9.9 33 77-109 214-246 (664)
174 PRK09169 hypothetical protein; 97.6 0.00015 3.2E-09 80.0 8.0 106 77-199 2109-2217(2316)
175 KOG0635 Adenosine 5'-phosphosu 97.6 0.00059 1.3E-08 56.5 8.9 160 76-254 29-205 (207)
176 PF01745 IPT: Isopentenyl tran 97.5 0.00013 2.8E-09 63.7 5.3 113 78-195 1-130 (233)
177 PF13521 AAA_28: AAA domain; P 97.5 4.6E-05 1E-09 63.3 2.3 27 80-107 1-27 (163)
178 PF13401 AAA_22: AAA domain; P 97.5 0.0003 6.4E-09 55.6 6.8 82 77-166 3-96 (131)
179 smart00382 AAA ATPases associa 97.5 8E-05 1.7E-09 57.9 3.4 28 78-105 2-29 (148)
180 COG1618 Predicted nucleotide k 97.5 0.00011 2.3E-09 61.4 3.9 43 76-118 3-45 (179)
181 PHA02575 1 deoxynucleoside mon 97.5 0.00011 2.3E-09 64.6 4.0 38 79-117 1-39 (227)
182 CHL00181 cbbX CbbX; Provisiona 97.4 0.00047 1E-08 63.1 7.8 27 76-102 57-83 (287)
183 PLN02840 tRNA dimethylallyltra 97.4 0.00012 2.5E-09 70.2 3.7 36 76-111 19-54 (421)
184 KOG3308 Uncharacterized protei 97.4 0.00065 1.4E-08 58.6 7.8 117 77-200 3-146 (225)
185 cd02029 PRK_like Phosphoribulo 97.3 0.002 4.3E-08 58.3 10.5 35 80-114 1-40 (277)
186 PF07728 AAA_5: AAA domain (dy 97.3 0.00014 3.1E-09 58.5 3.0 27 81-107 2-28 (139)
187 smart00763 AAA_PrkA PrkA AAA d 97.3 0.00013 2.8E-09 68.5 3.0 28 77-104 77-104 (361)
188 TIGR00390 hslU ATP-dependent p 97.3 0.00016 3.4E-09 69.2 3.5 35 77-111 46-80 (441)
189 PF03029 ATP_bind_1: Conserved 97.3 0.00037 8.1E-09 62.0 5.7 23 83-105 1-23 (238)
190 PF05496 RuvB_N: Holliday junc 97.3 0.00018 3.8E-09 63.4 3.4 30 78-107 50-79 (233)
191 TIGR02640 gas_vesic_GvpN gas v 97.3 0.00057 1.2E-08 61.5 6.8 30 78-107 21-50 (262)
192 PRK05201 hslU ATP-dependent pr 97.3 0.00047 1E-08 66.0 6.5 35 77-111 49-83 (443)
193 PLN02748 tRNA dimethylallyltra 97.3 0.00021 4.6E-09 69.4 4.1 36 76-111 20-55 (468)
194 PRK12377 putative replication 97.3 0.0048 1E-07 55.3 12.5 107 79-207 102-222 (248)
195 TIGR00174 miaA tRNA isopenteny 97.3 0.00018 3.9E-09 65.7 3.2 33 80-112 1-33 (287)
196 KOG0744 AAA+-type ATPase [Post 97.2 0.00022 4.8E-09 65.6 3.2 29 77-105 176-204 (423)
197 KOG0730 AAA+-type ATPase [Post 97.2 0.0022 4.7E-08 63.9 10.1 40 76-115 466-507 (693)
198 TIGR02880 cbbX_cfxQ probable R 97.2 0.0013 2.8E-08 60.0 7.9 25 78-102 58-82 (284)
199 PRK08099 bifunctional DNA-bind 97.1 0.00042 9.2E-09 66.2 4.2 32 76-107 217-248 (399)
200 PHA03136 thymidine kinase; Pro 97.1 0.013 2.7E-07 55.4 13.8 26 76-101 34-59 (378)
201 PLN00020 ribulose bisphosphate 97.1 0.00099 2.2E-08 62.8 6.0 40 76-115 146-187 (413)
202 TIGR01650 PD_CobS cobaltochela 97.1 0.00043 9.3E-09 64.3 3.3 29 79-107 65-93 (327)
203 TIGR00150 HI0065_YjeE ATPase, 97.1 0.00072 1.6E-08 54.9 4.2 29 77-105 21-49 (133)
204 COG3896 Chloramphenicol 3-O-ph 97.0 0.018 3.9E-07 48.2 12.3 163 77-248 22-204 (205)
205 cd00009 AAA The AAA+ (ATPases 97.0 0.00075 1.6E-08 53.0 4.1 25 78-102 19-43 (151)
206 PRK07952 DNA replication prote 97.0 0.014 3.1E-07 52.1 12.3 108 79-207 100-221 (244)
207 TIGR01526 nadR_NMN_Atrans nico 97.0 0.00075 1.6E-08 62.8 4.0 30 78-107 162-191 (325)
208 cd00544 CobU Adenosylcobinamid 97.0 0.0019 4.1E-08 54.5 6.1 25 80-104 1-25 (169)
209 KOG0739 AAA+-type ATPase [Post 96.9 0.0096 2.1E-07 54.6 10.7 138 81-271 169-311 (439)
210 COG1072 CoaA Panthothenate kin 96.9 0.0022 4.7E-08 58.0 6.5 28 75-102 79-106 (283)
211 cd00071 GMPK Guanosine monopho 96.9 0.00069 1.5E-08 55.0 3.1 23 81-103 2-24 (137)
212 PRK08116 hypothetical protein; 96.9 0.016 3.5E-07 52.4 12.3 109 79-207 115-237 (268)
213 PTZ00202 tuzin; Provisional 96.9 0.0093 2E-07 57.7 10.9 28 78-105 286-313 (550)
214 PF13173 AAA_14: AAA domain 96.9 0.00088 1.9E-08 53.4 3.5 35 78-112 2-40 (128)
215 PRK03992 proteasome-activating 96.9 0.00079 1.7E-08 64.1 3.7 38 77-114 164-203 (389)
216 PRK05342 clpX ATP-dependent pr 96.9 0.00085 1.8E-08 64.4 3.9 34 77-110 107-140 (412)
217 KOG0733 Nuclear AAA ATPase (VC 96.9 0.0044 9.5E-08 61.5 8.8 38 78-115 545-584 (802)
218 PRK14974 cell division protein 96.9 0.012 2.7E-07 55.0 11.5 27 76-102 138-164 (336)
219 COG0324 MiaA tRNA delta(2)-iso 96.9 0.0011 2.3E-08 61.1 4.1 36 77-112 2-37 (308)
220 PF03266 NTPase_1: NTPase; In 96.9 0.00094 2E-08 56.3 3.4 23 80-102 1-23 (168)
221 PF05729 NACHT: NACHT domain 96.9 0.001 2.2E-08 54.2 3.5 23 80-102 2-24 (166)
222 CHL00195 ycf46 Ycf46; Provisio 96.9 0.00091 2E-08 65.5 3.7 33 77-109 258-290 (489)
223 PLN02796 D-glycerate 3-kinase 96.8 0.00098 2.1E-08 62.3 3.6 38 76-113 98-140 (347)
224 PF13245 AAA_19: Part of AAA d 96.8 0.0014 2.9E-08 48.0 3.6 25 78-102 10-35 (76)
225 COG3911 Predicted ATPase [Gene 96.8 0.0017 3.7E-08 53.7 4.5 41 76-116 7-48 (183)
226 TIGR01242 26Sp45 26S proteasom 96.8 0.0012 2.6E-08 62.2 4.1 33 77-109 155-187 (364)
227 PF10662 PduV-EutP: Ethanolami 96.8 0.001 2.2E-08 54.6 3.1 24 78-101 1-24 (143)
228 COG1223 Predicted ATPase (AAA+ 96.8 0.014 3E-07 52.7 10.4 34 76-109 149-182 (368)
229 PRK00771 signal recognition pa 96.8 0.005 1.1E-07 59.6 8.1 27 76-102 93-119 (437)
230 PTZ00454 26S protease regulato 96.8 0.0013 2.7E-08 63.0 3.9 33 77-109 178-210 (398)
231 COG4185 Uncharacterized protei 96.7 0.032 7E-07 46.7 11.3 39 78-116 2-42 (187)
232 TIGR00635 ruvB Holliday juncti 96.7 0.0017 3.6E-08 59.3 4.2 29 77-105 29-57 (305)
233 PF00448 SRP54: SRP54-type pro 96.7 0.0016 3.4E-08 56.3 3.8 26 78-103 1-26 (196)
234 TIGR00382 clpX endopeptidase C 96.7 0.0014 3.1E-08 62.8 3.7 33 77-109 115-147 (413)
235 COG2256 MGS1 ATPase related to 96.7 0.0014 3E-08 62.0 3.5 33 77-109 47-79 (436)
236 PF00910 RNA_helicase: RNA hel 96.7 0.0013 2.8E-08 51.0 2.8 22 81-102 1-22 (107)
237 TIGR01241 FtsH_fam ATP-depende 96.7 0.0015 3.4E-08 64.0 3.8 32 78-109 88-119 (495)
238 PRK09087 hypothetical protein; 96.7 0.0018 3.9E-08 57.1 3.8 34 79-112 45-78 (226)
239 PF13191 AAA_16: AAA ATPase do 96.6 0.0016 3.5E-08 54.2 3.3 27 76-102 22-48 (185)
240 PF06309 Torsin: Torsin; Inte 96.6 0.0026 5.6E-08 51.1 4.3 28 74-101 49-76 (127)
241 PHA02244 ATPase-like protein 96.6 0.0013 2.7E-08 62.1 2.9 37 77-113 118-154 (383)
242 TIGR03420 DnaA_homol_Hda DnaA 96.6 0.0019 4.2E-08 56.0 3.7 37 76-112 36-77 (226)
243 TIGR03877 thermo_KaiC_1 KaiC d 96.6 0.0031 6.7E-08 55.8 5.0 28 72-100 16-43 (237)
244 KOG0731 AAA+-type ATPase conta 96.6 0.0012 2.6E-08 67.1 2.6 31 80-110 346-376 (774)
245 PF07726 AAA_3: ATPase family 96.6 0.001 2.2E-08 53.7 1.5 27 81-107 2-28 (131)
246 PF08477 Miro: Miro-like prote 96.6 0.0022 4.8E-08 49.6 3.5 23 80-102 1-23 (119)
247 TIGR01425 SRP54_euk signal rec 96.6 0.022 4.7E-07 55.0 10.8 27 76-102 98-124 (429)
248 PRK04195 replication factor C 96.6 0.0019 4.1E-08 63.2 3.6 32 78-109 39-70 (482)
249 PTZ00361 26 proteosome regulat 96.6 0.0022 4.7E-08 62.1 3.9 33 77-109 216-248 (438)
250 PRK00080 ruvB Holliday junctio 96.6 0.0023 5E-08 59.3 4.0 29 78-106 51-79 (328)
251 PRK07003 DNA polymerase III su 96.5 0.048 1E-06 56.0 13.5 27 79-105 39-65 (830)
252 COG1219 ClpX ATP-dependent pro 96.5 0.0022 4.8E-08 59.1 3.6 33 76-108 95-127 (408)
253 PF07724 AAA_2: AAA domain (Cd 96.5 0.0023 5E-08 54.1 3.4 27 78-104 3-29 (171)
254 COG0466 Lon ATP-dependent Lon 96.5 0.0021 4.5E-08 64.7 3.6 34 76-109 348-381 (782)
255 PRK06526 transposase; Provisio 96.5 0.0032 7E-08 56.6 4.5 40 76-115 96-140 (254)
256 PRK06620 hypothetical protein; 96.5 0.002 4.4E-08 56.3 3.1 30 79-108 45-74 (214)
257 KOG0738 AAA+-type ATPase [Post 96.5 0.018 3.8E-07 54.6 9.4 35 76-110 242-277 (491)
258 PLN03046 D-glycerate 3-kinase; 96.5 0.0019 4.1E-08 61.9 3.0 38 76-113 210-252 (460)
259 KOG0735 AAA+-type ATPase [Post 96.5 0.0095 2.1E-07 60.1 7.9 41 77-117 700-742 (952)
260 PRK10751 molybdopterin-guanine 96.5 0.003 6.5E-08 53.6 3.8 28 76-103 4-31 (173)
261 PRK06835 DNA replication prote 96.5 0.045 9.7E-07 51.1 11.9 108 79-207 184-305 (329)
262 PRK14729 miaA tRNA delta(2)-is 96.5 0.003 6.6E-08 58.1 4.1 35 77-112 3-37 (300)
263 cd03115 SRP The signal recogni 96.5 0.0029 6.3E-08 52.9 3.6 23 80-102 2-24 (173)
264 PRK13695 putative NTPase; Prov 96.4 0.0029 6.2E-08 53.1 3.6 24 79-102 1-24 (174)
265 COG1126 GlnQ ABC-type polar am 96.4 0.0027 5.9E-08 55.6 3.5 25 76-100 26-50 (240)
266 PRK04328 hypothetical protein; 96.4 0.0041 9E-08 55.5 4.8 29 72-101 18-46 (249)
267 TIGR03015 pepcterm_ATPase puta 96.4 0.0028 6.1E-08 56.5 3.7 27 77-103 42-68 (269)
268 PRK08903 DnaA regulatory inact 96.4 0.0034 7.4E-08 54.8 4.2 36 78-113 42-82 (227)
269 PF08303 tRNA_lig_kinase: tRNA 96.4 0.0019 4.1E-08 54.2 2.3 32 81-112 2-34 (168)
270 PRK07764 DNA polymerase III su 96.4 0.036 7.9E-07 57.7 12.1 27 79-105 38-64 (824)
271 PRK13342 recombination factor 96.4 0.003 6.4E-08 60.6 3.9 33 77-109 35-67 (413)
272 KOG1384 tRNA delta(2)-isopente 96.4 0.022 4.7E-07 52.7 9.2 35 77-111 6-40 (348)
273 cd04163 Era Era subfamily. Er 96.4 0.0032 6.8E-08 50.6 3.4 25 77-101 2-26 (168)
274 TIGR02928 orc1/cdc6 family rep 96.4 0.0028 6.1E-08 59.2 3.5 59 34-102 6-64 (365)
275 PRK12323 DNA polymerase III su 96.4 0.051 1.1E-06 55.0 12.4 27 78-104 38-64 (700)
276 TIGR02655 circ_KaiC circadian 96.4 0.0029 6.2E-08 62.0 3.6 35 76-110 261-300 (484)
277 CHL00176 ftsH cell division pr 96.4 0.0033 7.1E-08 63.6 4.0 33 77-109 215-247 (638)
278 PF03215 Rad17: Rad17 cell cyc 96.4 0.0036 7.9E-08 61.8 4.3 30 78-107 45-74 (519)
279 PF01695 IstB_IS21: IstB-like 96.4 0.0044 9.5E-08 52.7 4.2 40 77-116 46-90 (178)
280 COG2255 RuvB Holliday junction 96.3 0.0033 7.2E-08 57.1 3.5 28 79-106 53-80 (332)
281 PRK14951 DNA polymerase III su 96.3 0.049 1.1E-06 55.0 12.1 27 79-105 39-65 (618)
282 COG1855 ATPase (PilT family) [ 96.3 0.0029 6.4E-08 60.7 3.2 23 81-103 266-288 (604)
283 cd01120 RecA-like_NTPases RecA 96.3 0.0032 7E-08 50.8 3.0 23 80-102 1-23 (165)
284 TIGR00064 ftsY signal recognit 96.3 0.0043 9.3E-08 56.3 4.1 27 76-102 70-96 (272)
285 PRK09183 transposase/IS protei 96.3 0.0045 9.7E-08 55.8 4.2 38 76-113 100-142 (259)
286 PF02367 UPF0079: Uncharacteri 96.3 0.005 1.1E-07 49.3 4.0 30 76-105 13-42 (123)
287 PRK06067 flagellar accessory p 96.3 0.0054 1.2E-07 53.9 4.6 29 72-101 20-48 (234)
288 PRK10416 signal recognition pa 96.3 0.0044 9.6E-08 57.5 4.1 27 76-102 112-138 (318)
289 TIGR02237 recomb_radB DNA repa 96.3 0.0052 1.1E-07 52.9 4.3 38 72-110 7-49 (209)
290 COG1222 RPT1 ATP-dependent 26S 96.3 0.0078 1.7E-07 56.3 5.6 45 76-120 183-229 (406)
291 PRK06893 DNA replication initi 96.3 0.0044 9.6E-08 54.6 3.9 32 79-110 40-76 (229)
292 TIGR00101 ureG urease accessor 96.3 0.0047 1E-07 53.4 3.9 25 78-102 1-25 (199)
293 cd01131 PilT Pilus retraction 96.2 0.0042 9.1E-08 53.5 3.6 24 80-103 3-26 (198)
294 cd00820 PEPCK_HprK Phosphoenol 96.2 0.0047 1E-07 48.2 3.5 24 76-99 13-36 (107)
295 PRK08084 DNA replication initi 96.2 0.004 8.6E-08 55.1 3.5 33 79-111 46-83 (235)
296 COG1220 HslU ATP-dependent pro 96.2 0.0043 9.4E-08 57.7 3.6 33 77-109 49-81 (444)
297 PRK15455 PrkA family serine pr 96.2 0.0038 8.1E-08 62.1 3.4 26 77-102 102-127 (644)
298 TIGR01243 CDC48 AAA family ATP 96.2 0.0042 9E-08 63.9 3.9 37 78-114 487-525 (733)
299 cd01130 VirB11-like_ATPase Typ 96.2 0.0044 9.6E-08 52.7 3.4 27 76-102 23-49 (186)
300 PRK13768 GTPase; Provisional 96.2 0.0048 1E-07 55.3 3.8 25 78-102 2-26 (253)
301 TIGR03689 pup_AAA proteasome A 96.2 0.004 8.7E-08 61.3 3.6 28 78-105 216-243 (512)
302 PF03205 MobB: Molybdopterin g 96.2 0.005 1.1E-07 50.3 3.5 24 79-102 1-24 (140)
303 COG1224 TIP49 DNA helicase TIP 96.2 0.0038 8.2E-08 58.4 3.1 54 76-129 63-120 (450)
304 PF01926 MMR_HSR1: 50S ribosom 96.2 0.0045 9.8E-08 48.0 3.1 21 80-100 1-21 (116)
305 PLN03025 replication factor C 96.2 0.0048 1E-07 57.0 3.9 24 79-102 35-58 (319)
306 PRK04296 thymidine kinase; Pro 96.2 0.005 1.1E-07 52.7 3.7 25 78-102 2-26 (190)
307 PRK08533 flagellar accessory p 96.2 0.0077 1.7E-07 53.2 5.0 24 77-100 23-46 (230)
308 TIGR03709 PPK2_rel_1 polyphosp 96.2 0.19 4.2E-06 45.4 14.0 170 76-253 54-252 (264)
309 PRK12723 flagellar biosynthesi 96.2 0.017 3.6E-07 55.1 7.5 27 77-103 173-199 (388)
310 KOG2004 Mitochondrial ATP-depe 96.2 0.0039 8.6E-08 62.8 3.4 37 76-112 436-474 (906)
311 PRK14962 DNA polymerase III su 96.2 0.0054 1.2E-07 59.9 4.3 28 78-105 36-63 (472)
312 KOG1533 Predicted GTPase [Gene 96.2 0.0028 6E-08 56.1 2.0 22 81-102 5-26 (290)
313 TIGR03708 poly_P_AMP_trns poly 96.1 0.17 3.7E-06 49.7 14.4 166 76-249 38-232 (493)
314 COG0464 SpoVK ATPases of the A 96.1 0.0043 9.3E-08 60.8 3.4 38 77-114 275-314 (494)
315 KOG1969 DNA replication checkp 96.1 0.0052 1.1E-07 62.0 4.0 32 78-109 326-357 (877)
316 TIGR00763 lon ATP-dependent pr 96.1 0.0046 9.9E-08 64.0 3.8 32 77-108 346-377 (775)
317 COG1136 SalX ABC-type antimicr 96.1 0.0051 1.1E-07 54.3 3.5 25 76-100 29-53 (226)
318 PRK08181 transposase; Validate 96.1 0.0075 1.6E-07 54.7 4.6 39 77-115 105-148 (269)
319 PRK14952 DNA polymerase III su 96.1 0.076 1.6E-06 53.3 12.1 27 79-105 36-62 (584)
320 PRK12402 replication factor C 96.1 0.0057 1.2E-07 56.3 3.9 25 79-103 37-61 (337)
321 PRK09435 membrane ATPase/prote 96.1 0.0062 1.3E-07 56.9 4.1 27 76-102 54-80 (332)
322 PRK14961 DNA polymerase III su 96.1 0.0052 1.1E-07 57.9 3.5 27 79-105 39-65 (363)
323 cd04155 Arl3 Arl3 subfamily. 96.1 0.0056 1.2E-07 50.5 3.3 25 77-101 13-37 (173)
324 cd01394 radB RadB. The archaea 96.0 0.0079 1.7E-07 52.2 4.3 30 72-102 14-43 (218)
325 KOG0651 26S proteasome regulat 96.0 0.015 3.2E-07 53.6 6.1 53 76-131 164-218 (388)
326 COG4619 ABC-type uncharacteriz 96.0 0.0066 1.4E-07 51.5 3.5 26 76-101 27-52 (223)
327 TIGR03707 PPK2_P_aer polyphosp 96.0 0.35 7.6E-06 42.9 14.7 166 76-249 29-223 (230)
328 TIGR03878 thermo_KaiC_2 KaiC d 96.0 0.0071 1.5E-07 54.4 4.1 29 72-101 31-59 (259)
329 cd03116 MobB Molybdenum is an 96.0 0.0076 1.6E-07 50.3 3.8 24 79-102 2-25 (159)
330 PF00005 ABC_tran: ABC transpo 96.0 0.0052 1.1E-07 48.9 2.8 27 76-102 9-35 (137)
331 PRK14956 DNA polymerase III su 96.0 0.0058 1.3E-07 59.6 3.4 27 79-105 41-67 (484)
332 TIGR01243 CDC48 AAA family ATP 96.0 0.0055 1.2E-07 63.0 3.5 33 77-109 211-243 (733)
333 TIGR02655 circ_KaiC circadian 96.0 0.0091 2E-07 58.5 4.9 27 72-99 16-42 (484)
334 KOG4238 Bifunctional ATP sulfu 96.0 0.015 3.2E-07 54.5 5.8 159 76-254 48-225 (627)
335 PRK13341 recombination factor 95.9 0.0076 1.7E-07 61.8 4.3 34 77-110 51-84 (725)
336 KOG4235 Mitochondrial thymidin 95.9 0.49 1.1E-05 41.0 14.5 20 180-199 152-171 (244)
337 TIGR03499 FlhF flagellar biosy 95.9 0.0079 1.7E-07 54.8 4.0 26 77-102 193-218 (282)
338 PRK11331 5-methylcytosine-spec 95.9 0.0063 1.4E-07 58.9 3.4 27 77-103 193-219 (459)
339 KOG0737 AAA+-type ATPase [Post 95.9 0.0055 1.2E-07 57.4 2.9 46 71-116 120-167 (386)
340 COG0714 MoxR-like ATPases [Gen 95.9 0.0064 1.4E-07 56.5 3.4 31 77-107 42-72 (329)
341 TIGR01618 phage_P_loop phage n 95.9 0.0052 1.1E-07 54.1 2.6 34 76-111 10-43 (220)
342 COG1116 TauB ABC-type nitrate/ 95.9 0.0072 1.6E-07 53.8 3.5 25 76-100 27-51 (248)
343 PF01078 Mg_chelatase: Magnesi 95.9 0.0068 1.5E-07 52.8 3.2 24 79-102 23-46 (206)
344 PRK11034 clpA ATP-dependent Cl 95.9 0.0073 1.6E-07 62.2 4.0 28 80-107 490-517 (758)
345 PRK06921 hypothetical protein; 95.9 0.016 3.4E-07 52.5 5.7 38 77-114 116-159 (266)
346 TIGR01166 cbiO cobalt transpor 95.9 0.0075 1.6E-07 51.2 3.5 27 76-102 16-42 (190)
347 PF06068 TIP49: TIP49 C-termin 95.9 0.0037 8E-08 58.9 1.5 43 76-118 48-94 (398)
348 KOG0736 Peroxisome assembly fa 95.9 0.05 1.1E-06 55.5 9.5 32 79-110 706-737 (953)
349 PRK14722 flhF flagellar biosyn 95.9 0.0094 2E-07 56.5 4.3 27 76-102 135-161 (374)
350 cd03292 ABC_FtsE_transporter F 95.9 0.0077 1.7E-07 51.9 3.5 27 76-102 25-51 (214)
351 KOG1532 GTPase XAB1, interacts 95.9 0.0083 1.8E-07 54.4 3.7 44 72-115 13-61 (366)
352 PF13479 AAA_24: AAA domain 95.9 0.0062 1.3E-07 53.1 2.8 31 76-109 1-31 (213)
353 COG0378 HypB Ni2+-binding GTPa 95.9 0.0091 2E-07 51.4 3.7 31 77-107 11-46 (202)
354 TIGR01223 Pmev_kin_anim phosph 95.9 0.16 3.5E-06 43.2 11.2 110 80-199 1-132 (182)
355 smart00173 RAS Ras subfamily o 95.8 0.0081 1.8E-07 48.9 3.3 21 80-100 2-22 (164)
356 cd01124 KaiC KaiC is a circadi 95.8 0.0078 1.7E-07 50.5 3.3 21 81-101 2-22 (187)
357 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.8 0.0081 1.8E-07 52.0 3.5 27 76-102 28-54 (218)
358 PRK14490 putative bifunctional 95.8 0.0084 1.8E-07 56.7 3.8 27 77-103 4-30 (369)
359 TIGR00960 3a0501s02 Type II (G 95.8 0.0081 1.7E-07 52.0 3.4 27 76-102 27-53 (216)
360 PHA02544 44 clamp loader, smal 95.8 0.0094 2E-07 54.6 4.0 29 78-106 43-71 (316)
361 TIGR00073 hypB hydrogenase acc 95.8 0.0096 2.1E-07 51.5 3.8 28 76-103 20-47 (207)
362 cd03264 ABC_drug_resistance_li 95.8 0.0077 1.7E-07 51.9 3.2 24 77-101 25-48 (211)
363 cd04138 H_N_K_Ras_like H-Ras/N 95.8 0.0089 1.9E-07 48.2 3.4 23 79-101 2-24 (162)
364 TIGR00750 lao LAO/AO transport 95.8 0.0098 2.1E-07 54.6 4.0 27 76-102 32-58 (300)
365 PF01443 Viral_helicase1: Vira 95.8 0.0063 1.4E-07 52.9 2.6 22 81-102 1-22 (234)
366 PRK10787 DNA-binding ATP-depen 95.8 0.0082 1.8E-07 62.2 3.9 32 77-108 348-379 (784)
367 cd03301 ABC_MalK_N The N-termi 95.8 0.0089 1.9E-07 51.6 3.5 27 76-102 24-50 (213)
368 COG3839 MalK ABC-type sugar tr 95.8 0.0083 1.8E-07 56.0 3.4 35 76-113 27-61 (338)
369 PRK10867 signal recognition pa 95.8 0.01 2.2E-07 57.4 4.2 27 76-102 98-124 (433)
370 PRK06645 DNA polymerase III su 95.8 0.01 2.2E-07 58.5 4.2 29 78-106 43-71 (507)
371 cd03224 ABC_TM1139_LivF_branch 95.8 0.0091 2E-07 51.8 3.5 27 76-102 24-50 (222)
372 cd03225 ABC_cobalt_CbiO_domain 95.8 0.0093 2E-07 51.4 3.5 27 76-102 25-51 (211)
373 CHL00206 ycf2 Ycf2; Provisiona 95.8 0.0077 1.7E-07 66.6 3.5 38 77-114 1629-1668(2281)
374 TIGR02673 FtsE cell division A 95.8 0.0091 2E-07 51.5 3.4 27 76-102 26-52 (214)
375 KOG0743 AAA+-type ATPase [Post 95.8 0.0066 1.4E-07 58.2 2.7 29 81-109 238-266 (457)
376 cd03219 ABC_Mj1267_LivG_branch 95.7 0.0086 1.9E-07 52.5 3.3 27 76-102 24-50 (236)
377 cd04119 RJL RJL (RabJ-Like) su 95.7 0.0092 2E-07 48.4 3.2 22 80-101 2-23 (168)
378 cd03269 ABC_putative_ATPase Th 95.7 0.0096 2.1E-07 51.3 3.5 27 76-102 24-50 (210)
379 TIGR00231 small_GTP small GTP- 95.7 0.01 2.2E-07 46.9 3.4 23 79-101 2-24 (161)
380 TIGR02639 ClpA ATP-dependent C 95.7 0.0086 1.9E-07 61.6 3.7 37 76-112 481-520 (731)
381 cd03263 ABC_subfamily_A The AB 95.7 0.0096 2.1E-07 51.6 3.5 27 76-102 26-52 (220)
382 cd03261 ABC_Org_Solvent_Resist 95.7 0.0095 2.1E-07 52.3 3.5 27 76-102 24-50 (235)
383 cd04164 trmE TrmE (MnmE, ThdF, 95.7 0.0098 2.1E-07 47.6 3.3 24 78-101 1-24 (157)
384 smart00175 RAB Rab subfamily o 95.7 0.0093 2E-07 48.3 3.2 23 79-101 1-23 (164)
385 TIGR02211 LolD_lipo_ex lipopro 95.7 0.01 2.2E-07 51.6 3.5 27 76-102 29-55 (221)
386 TIGR03608 L_ocin_972_ABC putat 95.7 0.0098 2.1E-07 51.0 3.4 27 76-102 22-48 (206)
387 cd03262 ABC_HisP_GlnQ_permease 95.7 0.01 2.2E-07 51.2 3.5 27 76-102 24-50 (213)
388 TIGR00176 mobB molybdopterin-g 95.7 0.0096 2.1E-07 49.4 3.2 23 80-102 1-23 (155)
389 cd03229 ABC_Class3 This class 95.7 0.011 2.3E-07 49.9 3.5 26 76-101 24-49 (178)
390 PF00437 T2SE: Type II/IV secr 95.7 0.009 1.9E-07 53.6 3.2 27 76-102 125-151 (270)
391 cd03259 ABC_Carb_Solutes_like 95.7 0.01 2.2E-07 51.2 3.5 27 76-102 24-50 (213)
392 cd04136 Rap_like Rap-like subf 95.7 0.011 2.3E-07 48.0 3.4 22 79-100 2-23 (163)
393 COG1484 DnaC DNA replication p 95.7 0.012 2.6E-07 52.9 3.9 39 77-115 104-147 (254)
394 PRK14965 DNA polymerase III su 95.7 0.11 2.5E-06 52.0 11.3 29 77-105 37-65 (576)
395 PF13086 AAA_11: AAA domain; P 95.7 0.01 2.2E-07 50.9 3.4 23 80-102 19-41 (236)
396 cd03226 ABC_cobalt_CbiO_domain 95.7 0.01 2.2E-07 51.0 3.4 27 76-102 24-50 (205)
397 cd03256 ABC_PhnC_transporter A 95.7 0.01 2.2E-07 52.1 3.5 27 76-102 25-51 (241)
398 PF03308 ArgK: ArgK protein; 95.7 0.012 2.5E-07 53.0 3.8 27 76-102 27-53 (266)
399 cd01123 Rad51_DMC1_radA Rad51_ 95.7 0.013 2.7E-07 51.3 4.0 26 76-101 17-42 (235)
400 PF06745 KaiC: KaiC; InterPro 95.7 0.011 2.4E-07 51.6 3.6 28 72-100 14-41 (226)
401 PF04665 Pox_A32: Poxvirus A32 95.7 0.012 2.5E-07 52.6 3.7 26 77-102 12-37 (241)
402 PRK14963 DNA polymerase III su 95.7 0.0089 1.9E-07 58.9 3.3 27 78-104 36-62 (504)
403 PRK13541 cytochrome c biogenes 95.6 0.011 2.4E-07 50.5 3.5 27 76-102 24-50 (195)
404 cd03260 ABC_PstB_phosphate_tra 95.6 0.011 2.4E-07 51.6 3.5 27 76-102 24-50 (227)
405 TIGR00959 ffh signal recogniti 95.6 0.012 2.7E-07 56.7 4.1 27 76-102 97-123 (428)
406 TIGR02315 ABC_phnC phosphonate 95.6 0.011 2.3E-07 52.1 3.5 27 76-102 26-52 (243)
407 cd01918 HprK_C HprK/P, the bif 95.6 0.013 2.8E-07 48.5 3.7 33 77-110 13-45 (149)
408 COG1124 DppF ABC-type dipeptid 95.6 0.011 2.3E-07 52.6 3.4 26 76-101 31-56 (252)
409 cd03257 ABC_NikE_OppD_transpor 95.6 0.011 2.3E-07 51.5 3.4 27 76-102 29-55 (228)
410 KOG0734 AAA+-type ATPase conta 95.6 0.072 1.6E-06 52.5 9.2 34 76-109 335-368 (752)
411 cd03258 ABC_MetN_methionine_tr 95.6 0.011 2.4E-07 51.7 3.5 27 76-102 29-55 (233)
412 COG5192 BMS1 GTP-binding prote 95.6 0.014 3E-07 57.5 4.4 42 62-103 53-94 (1077)
413 cd00876 Ras Ras family. The R 95.6 0.0093 2E-07 48.0 2.8 21 80-100 1-21 (160)
414 cd03235 ABC_Metallic_Cations A 95.6 0.01 2.2E-07 51.3 3.2 27 76-102 23-49 (213)
415 cd03230 ABC_DR_subfamily_A Thi 95.6 0.012 2.6E-07 49.3 3.5 27 76-102 24-50 (173)
416 cd03247 ABCC_cytochrome_bd The 95.6 0.012 2.6E-07 49.5 3.5 27 76-102 26-52 (178)
417 cd03296 ABC_CysA_sulfate_impor 95.6 0.011 2.4E-07 52.0 3.5 27 76-102 26-52 (239)
418 PRK14955 DNA polymerase III su 95.6 0.011 2.3E-07 56.6 3.5 26 80-105 40-65 (397)
419 TIGR03410 urea_trans_UrtE urea 95.6 0.011 2.4E-07 51.7 3.4 27 76-102 24-50 (230)
420 cd04113 Rab4 Rab4 subfamily. 95.6 0.011 2.3E-07 48.2 3.0 22 79-100 1-22 (161)
421 cd00154 Rab Rab family. Rab G 95.6 0.011 2.3E-07 47.1 3.0 21 80-100 2-22 (159)
422 cd03293 ABC_NrtD_SsuB_transpor 95.6 0.011 2.4E-07 51.3 3.3 27 76-102 28-54 (220)
423 PRK11629 lolD lipoprotein tran 95.6 0.012 2.5E-07 51.7 3.5 27 76-102 33-59 (233)
424 PRK14949 DNA polymerase III su 95.6 0.0099 2.1E-07 61.8 3.4 27 79-105 39-65 (944)
425 PRK14957 DNA polymerase III su 95.6 0.011 2.3E-07 58.8 3.6 26 79-104 39-64 (546)
426 cd01983 Fer4_NifH The Fer4_Nif 95.6 0.013 2.7E-07 42.9 3.2 23 80-102 1-23 (99)
427 cd03265 ABC_DrrA DrrA is the A 95.6 0.012 2.6E-07 51.1 3.5 27 76-102 24-50 (220)
428 PRK13851 type IV secretion sys 95.6 0.0095 2.1E-07 55.9 3.0 28 76-103 160-187 (344)
429 PRK14087 dnaA chromosomal repl 95.6 0.39 8.5E-06 46.7 14.3 35 81-115 144-185 (450)
430 cd03232 ABC_PDR_domain2 The pl 95.6 0.012 2.5E-07 50.3 3.4 25 76-100 31-55 (192)
431 cd01128 rho_factor Transcripti 95.6 0.013 2.8E-07 52.5 3.8 29 76-104 14-42 (249)
432 cd01862 Rab7 Rab7 subfamily. 95.6 0.011 2.4E-07 48.4 3.1 22 80-101 2-23 (172)
433 cd00157 Rho Rho (Ras homology) 95.6 0.012 2.5E-07 48.2 3.2 23 79-101 1-23 (171)
434 cd03246 ABCC_Protease_Secretio 95.6 0.013 2.8E-07 49.1 3.5 27 76-102 26-52 (173)
435 PRK10247 putative ABC transpor 95.6 0.012 2.6E-07 51.4 3.5 26 76-101 31-56 (225)
436 cd03215 ABC_Carb_Monos_II This 95.5 0.012 2.6E-07 49.7 3.4 27 76-102 24-50 (182)
437 TIGR02323 CP_lyasePhnK phospho 95.5 0.011 2.5E-07 52.4 3.4 27 76-102 27-53 (253)
438 PRK11264 putative amino-acid A 95.5 0.012 2.6E-07 52.1 3.5 27 76-102 27-53 (250)
439 PRK14489 putative bifunctional 95.5 0.014 3E-07 55.2 4.1 27 76-102 203-229 (366)
440 PRK14960 DNA polymerase III su 95.5 0.012 2.5E-07 59.6 3.7 29 78-106 37-65 (702)
441 cd03218 ABC_YhbG The ABC trans 95.5 0.012 2.7E-07 51.4 3.5 27 76-102 24-50 (232)
442 cd03223 ABCD_peroxisomal_ALDP 95.5 0.013 2.8E-07 48.9 3.5 27 76-102 25-51 (166)
443 COG3842 PotA ABC-type spermidi 95.5 0.011 2.5E-07 55.4 3.4 25 76-100 29-53 (352)
444 TIGR03864 PQQ_ABC_ATP ABC tran 95.5 0.012 2.7E-07 51.7 3.5 27 76-102 25-51 (236)
445 PRK14250 phosphate ABC transpo 95.5 0.012 2.6E-07 52.0 3.5 27 76-102 27-53 (241)
446 PF00308 Bac_DnaA: Bacterial d 95.5 0.28 6E-06 43.0 12.0 35 81-115 37-78 (219)
447 TIGR03771 anch_rpt_ABC anchore 95.5 0.012 2.7E-07 51.3 3.4 27 76-102 4-30 (223)
448 PRK13540 cytochrome c biogenes 95.5 0.013 2.8E-07 50.2 3.5 27 76-102 25-51 (200)
449 PRK10463 hydrogenase nickel in 95.5 0.015 3.2E-07 53.3 4.0 27 76-102 102-128 (290)
450 TIGR01978 sufC FeS assembly AT 95.5 0.012 2.7E-07 51.7 3.4 26 76-101 24-49 (243)
451 PF00025 Arf: ADP-ribosylation 95.5 0.013 2.9E-07 49.2 3.5 25 76-100 12-36 (175)
452 PRK14964 DNA polymerase III su 95.5 0.012 2.5E-07 57.8 3.6 27 79-105 36-62 (491)
453 PF13555 AAA_29: P-loop contai 95.5 0.018 3.9E-07 40.5 3.5 24 77-100 22-45 (62)
454 PRK11701 phnK phosphonate C-P 95.5 0.012 2.6E-07 52.5 3.4 27 76-102 30-56 (258)
455 PRK09361 radB DNA repair and r 95.5 0.018 4E-07 50.1 4.5 35 76-110 21-60 (225)
456 cd04177 RSR1 RSR1 subgroup. R 95.5 0.013 2.9E-07 48.2 3.4 23 79-101 2-24 (168)
457 cd03214 ABC_Iron-Siderophores_ 95.5 0.014 3E-07 49.3 3.5 27 76-102 23-49 (180)
458 PRK12726 flagellar biosynthesi 95.5 0.018 3.8E-07 54.8 4.5 27 76-102 204-230 (407)
459 PF03976 PPK2: Polyphosphate k 95.5 0.12 2.6E-06 45.8 9.6 31 76-106 29-59 (228)
460 cd03250 ABCC_MRP_domain1 Domai 95.5 0.013 2.9E-07 50.2 3.5 27 76-102 29-55 (204)
461 cd03222 ABC_RNaseL_inhibitor T 95.5 0.013 2.8E-07 49.8 3.3 27 76-102 23-49 (177)
462 cd04139 RalA_RalB RalA/RalB su 95.5 0.013 2.8E-07 47.4 3.2 21 80-100 2-22 (164)
463 PRK14242 phosphate transporter 95.5 0.013 2.8E-07 52.1 3.4 27 76-102 30-56 (253)
464 cd03268 ABC_BcrA_bacitracin_re 95.5 0.014 3E-07 50.2 3.5 26 76-101 24-49 (208)
465 PRK11248 tauB taurine transpor 95.5 0.013 2.9E-07 52.3 3.5 27 76-102 25-51 (255)
466 PRK09302 circadian clock prote 95.5 0.016 3.5E-07 57.0 4.4 29 72-101 268-296 (509)
467 cd00879 Sar1 Sar1 subfamily. 95.5 0.015 3.2E-07 48.9 3.6 25 76-100 17-41 (190)
468 PRK10771 thiQ thiamine transpo 95.5 0.013 2.9E-07 51.3 3.4 27 76-102 23-49 (232)
469 cd01895 EngA2 EngA2 subfamily. 95.5 0.012 2.7E-07 47.7 3.0 24 78-101 2-25 (174)
470 PRK14262 phosphate ABC transpo 95.5 0.013 2.9E-07 51.9 3.4 26 76-101 27-52 (250)
471 PRK11124 artP arginine transpo 95.5 0.014 3E-07 51.5 3.5 27 76-102 26-52 (242)
472 KOG0991 Replication factor C, 95.5 0.013 2.8E-07 52.2 3.2 27 76-102 46-72 (333)
473 TIGR02770 nickel_nikD nickel i 95.5 0.013 2.9E-07 51.3 3.4 27 76-102 10-36 (230)
474 PRK10646 ADP-binding protein; 95.5 0.02 4.2E-07 47.6 4.2 45 52-105 11-55 (153)
475 PRK14247 phosphate ABC transpo 95.4 0.014 3E-07 51.8 3.5 27 76-102 27-53 (250)
476 PRK13894 conjugal transfer ATP 95.4 0.013 2.9E-07 54.4 3.5 26 77-102 147-172 (319)
477 PRK10744 pstB phosphate transp 95.4 0.013 2.9E-07 52.3 3.4 27 76-102 37-63 (260)
478 COG1122 CbiO ABC-type cobalt t 95.4 0.013 2.8E-07 52.1 3.3 26 76-101 28-53 (235)
479 PRK15177 Vi polysaccharide exp 95.4 0.014 3E-07 50.8 3.4 26 76-101 11-36 (213)
480 PRK14267 phosphate ABC transpo 95.4 0.014 3E-07 51.8 3.5 27 76-102 28-54 (253)
481 cd03234 ABCG_White The White s 95.4 0.015 3.2E-07 50.8 3.6 27 76-102 31-57 (226)
482 cd03216 ABC_Carb_Monos_I This 95.4 0.015 3.2E-07 48.4 3.4 26 76-101 24-49 (163)
483 cd03251 ABCC_MsbA MsbA is an e 95.4 0.014 3.1E-07 51.0 3.5 27 76-102 26-52 (234)
484 cd03228 ABCC_MRP_Like The MRP 95.4 0.015 3.3E-07 48.5 3.5 27 76-102 26-52 (171)
485 TIGR03005 ectoine_ehuA ectoine 95.4 0.014 3E-07 51.8 3.4 27 76-102 24-50 (252)
486 PRK10895 lipopolysaccharide AB 95.4 0.014 3.1E-07 51.4 3.5 27 76-102 27-53 (241)
487 PRK14274 phosphate ABC transpo 95.4 0.014 3.1E-07 52.1 3.5 27 76-102 36-62 (259)
488 PRK11784 tRNA 2-selenouridine 95.4 0.062 1.3E-06 50.5 7.9 107 79-199 142-253 (345)
489 cd01867 Rab8_Rab10_Rab13_like 95.4 0.017 3.6E-07 47.5 3.7 24 78-101 3-26 (167)
490 COG0541 Ffh Signal recognition 95.4 0.069 1.5E-06 51.2 8.1 28 75-102 97-124 (451)
491 cd03233 ABC_PDR_domain1 The pl 95.4 0.014 2.9E-07 50.3 3.2 27 76-102 31-57 (202)
492 PRK10584 putative ABC transpor 95.4 0.015 3.2E-07 50.7 3.5 27 76-102 34-60 (228)
493 cd03254 ABCC_Glucan_exporter_l 95.4 0.015 3.2E-07 50.8 3.5 27 76-102 27-53 (229)
494 PRK10908 cell division protein 95.4 0.015 3.3E-07 50.5 3.5 27 76-102 26-52 (222)
495 cd03253 ABCC_ATM1_transporter 95.4 0.015 3.2E-07 51.0 3.4 27 76-102 25-51 (236)
496 PRK13833 conjugal transfer pro 95.4 0.015 3.2E-07 54.2 3.5 26 77-102 143-168 (323)
497 PRK14958 DNA polymerase III su 95.4 0.014 3E-07 57.7 3.5 27 79-105 39-65 (509)
498 PRK09493 glnQ glutamine ABC tr 95.4 0.015 3.3E-07 51.2 3.5 27 76-102 25-51 (240)
499 PRK14255 phosphate ABC transpo 95.4 0.015 3.2E-07 51.6 3.5 26 76-101 29-54 (252)
500 cd03237 ABC_RNaseL_inhibitor_d 95.4 0.017 3.7E-07 51.5 3.9 28 75-102 22-49 (246)
No 1
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=8.2e-36 Score=249.45 Aligned_cols=173 Identities=22% Similarity=0.416 Sum_probs=161.1
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCC-CChhHHHHHHHHhccccchHHHHHHHHHHHHHcC
Q 023790 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP-RSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDG 153 (277)
Q Consensus 75 ~~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~-~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~ 153 (277)
++.+++|+|+|+|||||.|+|.+++++||+.|+|+|||+|++... +++.|..|++++.+|.++|.+++..+|++.|.+.
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~~ 84 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRSS 84 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHhc
Confidence 368899999999999999999999999999999999999999988 9999999999999999999999999999999985
Q ss_pred CccCccEEEEcCccCCHHHHHHHHhhc--CcCEEEEecCCHHHHHHhh-------------cchHHHHHHHHHHhchhHH
Q 023790 154 YYRGEIGFILDGLPRSRIQAEILDQLA--EIDLVVNFKCADNFIVTNR-------------GGSLKEKLEAYAELGKPLE 218 (277)
Q Consensus 154 ~~~~~~g~IldGfPrt~~qae~l~~~~--~~d~vI~L~~~~e~l~~Rl-------------~~~~~~rl~~y~~~~~~l~ 218 (277)
...++|+||||||+..|+..|++.. .+++|++|+|+.|++++|+ .+.+++|++.|.+...|+.
T Consensus 85 --~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~t~Pvi 162 (195)
T KOG3079|consen 85 --GDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKSTLPVI 162 (195)
T ss_pred --CCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHcchHHH
Confidence 3446699999999999999999764 5899999999999999998 3468999999999999999
Q ss_pred HHHHhcCcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 219 DYYQKQKKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 219 ~~y~~~~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
+||++.++++.|+++.++++|+.+|..++..
T Consensus 163 ~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~ 193 (195)
T KOG3079|consen 163 EYYEKKGKLLKINAERSVDDVFEEVVTAIDA 193 (195)
T ss_pred HHHHccCcEEEecCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999999999999998763
No 2
>PLN02459 probable adenylate kinase
Probab=100.00 E-value=2.1e-35 Score=263.33 Aligned_cols=177 Identities=46% Similarity=0.784 Sum_probs=163.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCcc
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (277)
++++|+|+|+|||||||+|+.|+++||+.||++|+++|+++..++++|+.+++++.+|+++|++++..+|.+++.+....
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~ 107 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEE 107 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhccccc
Confidence 55789999999999999999999999999999999999999999999999999999999999999999999999874212
Q ss_pred CccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcc-----------------------------------
Q 023790 157 GEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG----------------------------------- 201 (277)
Q Consensus 157 ~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~----------------------------------- 201 (277)
...|||||||||+..|++.|+....++.||+|+++++++++|+..
T Consensus 108 ~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~~~p~~~~ 187 (261)
T PLN02459 108 GESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMPPLLPP 187 (261)
T ss_pred CCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhccccccccCccccccccccccccccccccCCCCCCC
Confidence 468999999999999999999888899999999999999999721
Q ss_pred ----------------hHHHHHHHHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHHcccc
Q 023790 202 ----------------SLKEKLEAYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHLQHIN 253 (277)
Q Consensus 202 ----------------~~~~rl~~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~~~~~ 253 (277)
.+++|++.|+++..|+.+||++.++++.||+++++++||++|.++|...+-+
T Consensus 188 ~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~~~~~~ 255 (261)
T PLN02459 188 PECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALNLDDED 255 (261)
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhchhhhh
Confidence 2679999999999999999999999999999999999999999999877644
No 3
>PLN02674 adenylate kinase
Probab=100.00 E-value=3.2e-35 Score=260.77 Aligned_cols=169 Identities=27% Similarity=0.504 Sum_probs=156.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCcc
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (277)
..++|+|+|+|||||+|+|+.||++||++|||+|+++|+++..++++|+.+++++.+|+++|++++..++.+++.+..
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~-- 107 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS-- 107 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcC--
Confidence 457899999999999999999999999999999999999999999999999999999999999999999999998863
Q ss_pred CccEEEEcCccCCHHHHHHHHhh-----cCcCEEEEecCCHHHHHHhh--------------------------------
Q 023790 157 GEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNR-------------------------------- 199 (277)
Q Consensus 157 ~~~g~IldGfPrt~~qae~l~~~-----~~~d~vI~L~~~~e~l~~Rl-------------------------------- 199 (277)
...|||||||||+..|++.|+.. ..++.||+|++|++++++|+
T Consensus 108 ~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~ 187 (244)
T PLN02674 108 CQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEP 187 (244)
T ss_pred cCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCcccCcccccCCc
Confidence 35899999999999999999865 36899999999999999997
Q ss_pred --------cchHHHHHHHHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHH
Q 023790 200 --------GGSLKEKLEAYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTAL 247 (277)
Q Consensus 200 --------~~~~~~rl~~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L 247 (277)
++.+++|++.|++++.|+.+||++.++++.||+++++++|+++|..+|
T Consensus 188 L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l 243 (244)
T PLN02674 188 LIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL 243 (244)
T ss_pred cccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 124689999999999999999999999999999999999999999876
No 4
>PRK14529 adenylate kinase; Provisional
Probab=100.00 E-value=7.7e-33 Score=242.76 Aligned_cols=166 Identities=20% Similarity=0.371 Sum_probs=151.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCccCc
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (277)
|+|+|+|+|||||||+|+.|+++|+++|+|+++++|+++..++++++.+++++.+|.++|++++.+++.+++.+. . .
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~--~-~ 77 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQD--G-K 77 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhcc--C-C
Confidence 479999999999999999999999999999999999999989999999999999999999999999999999875 2 7
Q ss_pred cEEEEcCccCCHHHHHHHHhh-----cCcCEEEEecCCHHHHHHhh----------------------------------
Q 023790 159 IGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNR---------------------------------- 199 (277)
Q Consensus 159 ~g~IldGfPrt~~qae~l~~~-----~~~d~vI~L~~~~e~l~~Rl---------------------------------- 199 (277)
.|||||||||+..||+.|+.. ..++.||+|++|++++++|+
T Consensus 78 ~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~ 157 (223)
T PRK14529 78 NGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGE 157 (223)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCc
Confidence 899999999999999998754 46899999999999999997
Q ss_pred ---------cchHHHHHHHHHHh---chhHHHHHHh-----cCcEEEEeCCCCHHHHHHHHHHHH
Q 023790 200 ---------GGSLKEKLEAYAEL---GKPLEDYYQK-----QKKLLEFQVGSAPLETWQGLLTAL 247 (277)
Q Consensus 200 ---------~~~~~~rl~~y~~~---~~~l~~~y~~-----~~~li~Ida~~s~eev~~~I~~~L 247 (277)
++.+++|++.|+++ ..++.+||++ .++++.||+++++++|+++|.+.|
T Consensus 158 l~~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l 222 (223)
T PRK14529 158 LSTRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQL 222 (223)
T ss_pred cccCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 12467899999997 4578899986 678999999999999999999876
No 5
>PRK13808 adenylate kinase; Provisional
Probab=100.00 E-value=6.4e-33 Score=255.19 Aligned_cols=171 Identities=25% Similarity=0.431 Sum_probs=157.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCccCc
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (277)
|+|+|+|||||||||+|+.|++.||++||++||+||.++..++++|..+.+++.+|.++|++++..+|.+++.+.. ..
T Consensus 1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~--~~ 78 (333)
T PRK13808 1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPD--AA 78 (333)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhccc--cc
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999998763 36
Q ss_pred cEEEEcCccCCHHHHHHHHhh-----cCcCEEEEecCCHHHHHHhhc-------------------chHHHHHHHHHHhc
Q 023790 159 IGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNRG-------------------GSLKEKLEAYAELG 214 (277)
Q Consensus 159 ~g~IldGfPrt~~qae~l~~~-----~~~d~vI~L~~~~e~l~~Rl~-------------------~~~~~rl~~y~~~~ 214 (277)
.||||||||++..|++.|++. ..||+||+|+||++++++|+. +.+++|+..|+++.
T Consensus 79 ~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~~~t 158 (333)
T PRK13808 79 NGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQT 158 (333)
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHHHHh
Confidence 899999999999999998764 369999999999999999972 24678999999999
Q ss_pred hhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHHcc
Q 023790 215 KPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHLQH 251 (277)
Q Consensus 215 ~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~~~ 251 (277)
.|+.++|.+.+.++.||++++++||+++|+..|....
T Consensus 159 ~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~~ 195 (333)
T PRK13808 159 EPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVG 195 (333)
T ss_pred HHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHHh
Confidence 9999999988889999999999999999999998643
No 6
>PRK14526 adenylate kinase; Provisional
Probab=100.00 E-value=1.8e-32 Score=239.12 Aligned_cols=170 Identities=26% Similarity=0.431 Sum_probs=156.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCccCc
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (277)
|+|+|+|+|||||||+|+.|++.+++.|+++|+++|+++..+++.|+.+++++.+|.++|++++.+++.+++.... ..
T Consensus 1 m~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~--~~ 78 (211)
T PRK14526 1 MKLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIK--NN 78 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhccc--cc
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999998753 46
Q ss_pred cEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhh---------------------------------------
Q 023790 159 IGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR--------------------------------------- 199 (277)
Q Consensus 159 ~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl--------------------------------------- 199 (277)
.|||||||||+..|++.|++......+|+|++|++++++|+
T Consensus 79 ~g~ilDGfPR~~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD 158 (211)
T PRK14526 79 DNFILDGFPRNINQAKALDKFLPNIKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDD 158 (211)
T ss_pred CcEEEECCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeeccCCC
Confidence 89999999999999999988655457889999999999997
Q ss_pred -cchHHHHHHHHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 200 -GGSLKEKLEAYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 200 -~~~~~~rl~~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
++.+++|++.|+++..|+.++|.+.++++.||+++++++|+++|.++|..+
T Consensus 159 ~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~~ 210 (211)
T PRK14526 159 KEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISKK 210 (211)
T ss_pred CHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHccc
Confidence 224689999999999999999999899999999999999999999999865
No 7
>PRK14531 adenylate kinase; Provisional
Probab=100.00 E-value=1.9e-32 Score=233.70 Aligned_cols=167 Identities=26% Similarity=0.421 Sum_probs=153.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCccC
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRG 157 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~ 157 (277)
+++|+|+|+|||||||+|+.|++++|++||++|+++|+++..++++++.+++++.+|.++|++++..++.+++.+. .
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~---~ 78 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKAL---N 78 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhc---c
Confidence 4579999999999999999999999999999999999999889999999999999999999999999999888763 3
Q ss_pred ccEEEEcCccCCHHHHHHHHhh-----cCcCEEEEecCCHHHHHHhhc---------chHHHHHHHHHHhchhHHHHHHh
Q 023790 158 EIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNRG---------GSLKEKLEAYAELGKPLEDYYQK 223 (277)
Q Consensus 158 ~~g~IldGfPrt~~qae~l~~~-----~~~d~vI~L~~~~e~l~~Rl~---------~~~~~rl~~y~~~~~~l~~~y~~ 223 (277)
..||||||||++..|++.|++. ..++.||+|+||++++.+|+. +.+++|++.|++...|+.++|++
T Consensus 79 ~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~ 158 (183)
T PRK14531 79 SGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGRADDNEAVIRNRLEVYREKTAPLIDHYRQ 158 (183)
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999988764 267899999999999999982 35789999999999999999998
Q ss_pred cCcEEEEeCCCCHHHHHHHHHHHH
Q 023790 224 QKKLLEFQVGSAPLETWQGLLTAL 247 (277)
Q Consensus 224 ~~~li~Ida~~s~eev~~~I~~~L 247 (277)
.++++.||+++++++|+++|.+.|
T Consensus 159 ~~~~~~id~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 159 RGLLQSVEAQGSIEAITERIEKVL 182 (183)
T ss_pred cCCEEEEECCCCHHHHHHHHHHHh
Confidence 889999999999999999999876
No 8
>PRK14528 adenylate kinase; Provisional
Probab=100.00 E-value=3.3e-32 Score=233.10 Aligned_cols=166 Identities=27% Similarity=0.492 Sum_probs=153.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCccCc
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (277)
++|+|+|+|||||||+|+.|+++||++|+++|+++|+++..++++|..++.++..|+++|++++..++.+++.+.. ..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~--~~ 79 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREAD--CK 79 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcC--cc
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999998763 35
Q ss_pred cEEEEcCccCCHHHHHHHHhh-----cCcCEEEEecCCHHHHHHhh-------------cchHHHHHHHHHHhchhHHHH
Q 023790 159 IGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNR-------------GGSLKEKLEAYAELGKPLEDY 220 (277)
Q Consensus 159 ~g~IldGfPrt~~qae~l~~~-----~~~d~vI~L~~~~e~l~~Rl-------------~~~~~~rl~~y~~~~~~l~~~ 220 (277)
.||||||||++..|++.|++. ..+|.+|+|+||++++.+|+ ++.+++|++.|+++..|+.++
T Consensus 80 ~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~pv~~~ 159 (186)
T PRK14528 80 NGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLPLLDF 159 (186)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHHHHHH
Confidence 799999999999999998764 36899999999999999998 346789999999999999999
Q ss_pred HHhcCcEEEEeCCCCHHHHHHHHHHH
Q 023790 221 YQKQKKLLEFQVGSAPLETWQGLLTA 246 (277)
Q Consensus 221 y~~~~~li~Ida~~s~eev~~~I~~~ 246 (277)
|+++++++.||+++++++|++.|.+.
T Consensus 160 y~~~~~~~~i~~~~~~~~v~~~~~~~ 185 (186)
T PRK14528 160 YAAQKKLSQVNGVGSLEEVTSLIQKE 185 (186)
T ss_pred HHhCCCEEEEECCCCHHHHHHHHHHh
Confidence 99999999999999999999998864
No 9
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=100.00 E-value=4e-32 Score=236.45 Aligned_cols=167 Identities=32% Similarity=0.566 Sum_probs=153.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCccCcc
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEI 159 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~~ 159 (277)
+|+|+|+|||||||+|+.|+++||+.||+++|++|+++..+++++..+++++.+|..+|++++.+++.+++.+.. ....
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~-~~~~ 79 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQ-DNEN 79 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCc-ccCC
Confidence 489999999999999999999999999999999999999889999999999999999999999999999998742 1367
Q ss_pred EEEEcCccCCHHHHHHHHhhc--CcCEEEEecCCHHHHHHhhc-------------------------------------
Q 023790 160 GFILDGLPRSRIQAEILDQLA--EIDLVVNFKCADNFIVTNRG------------------------------------- 200 (277)
Q Consensus 160 g~IldGfPrt~~qae~l~~~~--~~d~vI~L~~~~e~l~~Rl~------------------------------------- 200 (277)
||||||||++..|++.|++.. .++.+|+|++|++++++|+.
T Consensus 80 ~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~d 159 (210)
T TIGR01351 80 GFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQRED 159 (210)
T ss_pred cEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccCCC
Confidence 999999999999999998765 58999999999999999972
Q ss_pred ---chHHHHHHHHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHH
Q 023790 201 ---GSLKEKLEAYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTAL 247 (277)
Q Consensus 201 ---~~~~~rl~~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L 247 (277)
+.+++|++.|+++..++.++|++.++++.||+++++++|+++|.++|
T Consensus 160 D~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 209 (210)
T TIGR01351 160 DTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL 209 (210)
T ss_pred CCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence 13689999999999999999999889999999999999999999876
No 10
>PRK14532 adenylate kinase; Provisional
Probab=100.00 E-value=5.8e-32 Score=231.01 Aligned_cols=168 Identities=29% Similarity=0.454 Sum_probs=153.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCccCc
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (277)
|+|+|+|+|||||||+|+.||+++|+.||++|+++|+++..+++.++.+++++..|+++|++++.+++.+++... ..+
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~ 78 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEA--EAA 78 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCc--Ccc
Confidence 469999999999999999999999999999999999999888999999999999999999999999999999765 347
Q ss_pred cEEEEcCccCCHHHHHHHHhh-----cCcCEEEEecCCHHHHHHhhc-------------chHHHHHHHHHHhchhHHHH
Q 023790 159 IGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNRG-------------GSLKEKLEAYAELGKPLEDY 220 (277)
Q Consensus 159 ~g~IldGfPrt~~qae~l~~~-----~~~d~vI~L~~~~e~l~~Rl~-------------~~~~~rl~~y~~~~~~l~~~ 220 (277)
.|||+||||++..|++.+++. ..||++|+|++|++++.+|+. +.+.+|++.|.++..++.++
T Consensus 79 ~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i~~~ 158 (188)
T PRK14532 79 GGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLLPY 158 (188)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999988653 468999999999999999972 23578999999999999999
Q ss_pred HHhcCcEEEEeCCCCHHHHHHHHHHHHH
Q 023790 221 YQKQKKLLEFQVGSAPLETWQGLLTALH 248 (277)
Q Consensus 221 y~~~~~li~Ida~~s~eev~~~I~~~L~ 248 (277)
|++.+.++.||+++++++|+++|.+.|.
T Consensus 159 y~~~~~~~~id~~~~~eev~~~I~~~l~ 186 (188)
T PRK14532 159 YAGQGKLTEVDGMGSIEAVAASIDAALE 186 (188)
T ss_pred HHhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence 9988889999999999999999999884
No 11
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.98 E-value=2.7e-31 Score=234.36 Aligned_cols=171 Identities=23% Similarity=0.445 Sum_probs=154.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCc
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~ 155 (277)
+.+++|+|+|+|||||||+|+.||++||++||++|+++|+++..++++|..+++++.+|.++|++++.+++.+++.+...
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~ 83 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTD 83 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhcc
Confidence 35688999999999999999999999999999999999999988899999999999999999999999999999987211
Q ss_pred cCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhc-----------------------------------
Q 023790 156 RGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG----------------------------------- 200 (277)
Q Consensus 156 ~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~----------------------------------- 200 (277)
....|||||||||+..|++.|++...+++||+|+++++++++|+.
T Consensus 84 ~~~~g~iLDGfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~~~~~~c~~ 163 (229)
T PTZ00088 84 DCFKGFILDGFPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADCEG 163 (229)
T ss_pred ccCceEEEecCCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCCCCCCCCcccc
Confidence 246899999999999999999887789999999999999998851
Q ss_pred ---------------chHHHHHHHHHHhchhHHHHHHhcCc-EEEE---eCCCCHHHHHHHHHHH
Q 023790 201 ---------------GSLKEKLEAYAELGKPLEDYYQKQKK-LLEF---QVGSAPLETWQGLLTA 246 (277)
Q Consensus 201 ---------------~~~~~rl~~y~~~~~~l~~~y~~~~~-li~I---da~~s~eev~~~I~~~ 246 (277)
+.+++|++.|+++..++.++|++.++ ++.+ |+.+++++|++.|.+.
T Consensus 164 ~~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 228 (229)
T PTZ00088 164 CKGNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFYRIVLQR 228 (229)
T ss_pred cCCcccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHhh
Confidence 13578999999999999999999998 9888 7999999999998764
No 12
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.98 E-value=3.3e-31 Score=231.50 Aligned_cols=169 Identities=30% Similarity=0.543 Sum_probs=154.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCccCc
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (277)
|+|+|+|+|||||||+|+.||++||+.|+++++++++++..+++.++.+++++.+|..+|++++..++.+++.+.. ..
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~--~~ 78 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPD--CK 78 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccC--cc
Confidence 4799999999999999999999999999999999999998889999999999999999999999999999998753 34
Q ss_pred cEEEEcCccCCHHHHHHHHhh-----cCcCEEEEecCCHHHHHHhhcc--------------------------------
Q 023790 159 IGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNRGG-------------------------------- 201 (277)
Q Consensus 159 ~g~IldGfPrt~~qae~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~-------------------------------- 201 (277)
.||||||||++..|++.|++. ..++.+|+|+|+++++++|+..
T Consensus 79 ~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~ 158 (215)
T PRK00279 79 NGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELI 158 (215)
T ss_pred CCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCccc
Confidence 599999999999999999654 3678999999999999999722
Q ss_pred --------hHHHHHHHHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 202 --------SLKEKLEAYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 202 --------~~~~rl~~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
.+++|++.|+++..++.++|++.++++.||+++++++|+++|.+.|..
T Consensus 159 ~r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (215)
T PRK00279 159 QRADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK 214 (215)
T ss_pred CCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 368999999999999999999888999999999999999999998863
No 13
>PRK02496 adk adenylate kinase; Provisional
Probab=99.97 E-value=1.1e-30 Score=222.43 Aligned_cols=169 Identities=31% Similarity=0.510 Sum_probs=154.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCccC
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRG 157 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~ 157 (277)
+++|+|+|+|||||||+|+.|++++|++|+++|+++++++..++++|..+++++.+|..+|++++..++.+++.+.. .
T Consensus 1 ~~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~--~ 78 (184)
T PRK02496 1 MTRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPD--A 78 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcC--c
Confidence 47899999999999999999999999999999999999998889999999999999999999999999999998653 3
Q ss_pred ccEEEEcCccCCHHHHHHHHhh-----cCcCEEEEecCCHHHHHHhhc---------chHHHHHHHHHHhchhHHHHHHh
Q 023790 158 EIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNRG---------GSLKEKLEAYAELGKPLEDYYQK 223 (277)
Q Consensus 158 ~~g~IldGfPrt~~qae~l~~~-----~~~d~vI~L~~~~e~l~~Rl~---------~~~~~rl~~y~~~~~~l~~~y~~ 223 (277)
..|||+||||++..|++.++.. ..++.+|+|++|++++.+|+. +.+++|++.|+++..++.++|++
T Consensus 79 ~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~dd~~~~~~~r~~~y~~~~~~v~~~~~~ 158 (184)
T PRK02496 79 ANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRKDDTEEVIRRRLEVYREQTAPLIDYYRD 158 (184)
T ss_pred cCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5799999999999999888753 368999999999999999982 45789999999999999999988
Q ss_pred cCcEEEEeCCCCHHHHHHHHHHHHH
Q 023790 224 QKKLLEFQVGSAPLETWQGLLTALH 248 (277)
Q Consensus 224 ~~~li~Ida~~s~eev~~~I~~~L~ 248 (277)
.+.++.||+++++++|+++|.+.|.
T Consensus 159 ~~~~~~Ida~~~~~~V~~~i~~~l~ 183 (184)
T PRK02496 159 RQKLLTIDGNQSVEAVTTELKAALA 183 (184)
T ss_pred cCCEEEEECCCCHHHHHHHHHHHhC
Confidence 8889999999999999999998773
No 14
>PLN02200 adenylate kinase family protein
Probab=99.97 E-value=1.7e-30 Score=230.14 Aligned_cols=172 Identities=21% Similarity=0.413 Sum_probs=156.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCc
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~ 155 (277)
+.+++|+|+|+|||||||+|+.|++++|+.||++++++|+++...++.+..+.+.+..|..+|++++.+++.+++...
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~-- 118 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESS-- 118 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC--
Confidence 456889999999999999999999999999999999999999888899999999999999999999999999888764
Q ss_pred cCccEEEEcCccCCHHHHHHHHhh--cCcCEEEEecCCHHHHHHhhc-----------chHHHHHHHHHHhchhHHHHHH
Q 023790 156 RGEIGFILDGLPRSRIQAEILDQL--AEIDLVVNFKCADNFIVTNRG-----------GSLKEKLEAYAELGKPLEDYYQ 222 (277)
Q Consensus 156 ~~~~g~IldGfPrt~~qae~l~~~--~~~d~vI~L~~~~e~l~~Rl~-----------~~~~~rl~~y~~~~~~l~~~y~ 222 (277)
...+|||||||++..|+..|++. ..||.+|+|+++++++.+|+. +.+++|++.|++...++.++|+
T Consensus 119 -~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y~~~~~pv~~~y~ 197 (234)
T PLN02200 119 -DNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQGRVDDNIDTIKKRLKVFNALNLPVIDYYS 197 (234)
T ss_pred -CCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999988765 368999999999999999982 3467899999999999999999
Q ss_pred hcCcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 223 KQKKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 223 ~~~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
+.++++.||+++++++|+++|++.+..-
T Consensus 198 ~~~~~~~IDa~~~~eeV~~~v~~~l~~~ 225 (234)
T PLN02200 198 KKGKLYTINAVGTVDEIFEQVRPIFAAC 225 (234)
T ss_pred hcCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence 8888999999999999999999998764
No 15
>PRK14527 adenylate kinase; Provisional
Probab=99.97 E-value=2.2e-30 Score=222.20 Aligned_cols=169 Identities=27% Similarity=0.458 Sum_probs=153.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCc
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~ 155 (277)
.++++|+|+|+|||||||+|+.|++++|+.|+++|++++++...+++++..+++++.+|..+|++++..++.+++.+..
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~- 82 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGME- 82 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC-
Confidence 3678899999999999999999999999999999999999988889999999999999999999999999999988752
Q ss_pred cCccEEEEcCccCCHHHHHHHHhh-----cCcCEEEEecCCHHHHHHhh-------------cchHHHHHHHHHHhchhH
Q 023790 156 RGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNR-------------GGSLKEKLEAYAELGKPL 217 (277)
Q Consensus 156 ~~~~g~IldGfPrt~~qae~l~~~-----~~~d~vI~L~~~~e~l~~Rl-------------~~~~~~rl~~y~~~~~~l 217 (277)
..+||+||||++..|++.|+.. ..++.||+|+||++++.+|+ ++.+++|++.|.++..++
T Consensus 83 --~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~~~v 160 (191)
T PRK14527 83 --PVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPL 160 (191)
T ss_pred --CCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHhHHH
Confidence 3579999999999999888754 35788999999999999998 234689999999999999
Q ss_pred HHHHHhcCcEEEEeCCCCHHHHHHHHHHHH
Q 023790 218 EDYYQKQKKLLEFQVGSAPLETWQGLLTAL 247 (277)
Q Consensus 218 ~~~y~~~~~li~Ida~~s~eev~~~I~~~L 247 (277)
.++|++.++++.||+++++++|+++|...|
T Consensus 161 ~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 190 (191)
T PRK14527 161 VDYYEARGHLKRVDGLGTPDEVYARILKAL 190 (191)
T ss_pred HHHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence 999999899999999999999999999876
No 16
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.97 E-value=2.3e-30 Score=219.71 Aligned_cols=165 Identities=19% Similarity=0.404 Sum_probs=149.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCccCcc
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEI 159 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~~ 159 (277)
+|+|+|+|||||||+|+.|++++|+.||+++|++|+++..+++.++.+++++.+|..+|++++..++.+++... .+.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~---~~~ 77 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQAD---GSK 77 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc---CCC
Confidence 48999999999999999999999999999999999998888899999999999999999999999999988864 267
Q ss_pred EEEEcCccCCHHHHHHHHhh----cCcCEEEEecCCHHHHHHhhc-------------chHHHHHHHHHHhchhHHHHHH
Q 023790 160 GFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNRG-------------GSLKEKLEAYAELGKPLEDYYQ 222 (277)
Q Consensus 160 g~IldGfPrt~~qae~l~~~----~~~d~vI~L~~~~e~l~~Rl~-------------~~~~~rl~~y~~~~~~l~~~y~ 222 (277)
+|||||||++..|++.+.+. ..|+.+|+|++|++++++|+. +.+++|++.|.+...++.++|+
T Consensus 78 ~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~ 157 (183)
T TIGR01359 78 KFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYE 157 (183)
T ss_pred cEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887654 378999999999999999972 2467889999999999999998
Q ss_pred hcCcEEEEeCCCCHHHHHHHHHHHH
Q 023790 223 KQKKLLEFQVGSAPLETWQGLLTAL 247 (277)
Q Consensus 223 ~~~~li~Ida~~s~eev~~~I~~~L 247 (277)
..+.++.||+++++++|+++|.+.|
T Consensus 158 ~~~~~~~Id~~~~~~~v~~~i~~~l 182 (183)
T TIGR01359 158 NKGKVKEINAEGSVEEVFEDVEKIF 182 (183)
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHh
Confidence 8888999999999999999999876
No 17
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.97 E-value=7.1e-31 Score=217.02 Aligned_cols=142 Identities=35% Similarity=0.601 Sum_probs=127.8
Q ss_pred EEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCccCccEEE
Q 023790 83 FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFI 162 (277)
Q Consensus 83 i~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~~g~I 162 (277)
|+|||||||+|+|+.||++||+.||++++++|+++..++++|+.+++++.+|+.+|++++.+++..++.+. ....|||
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~--~~~~g~i 78 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQP--PCNRGFI 78 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSG--GTTTEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhh--cccceee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999986 3579999
Q ss_pred EcCccCCHHHHHHHHh-----hcCcCEEEEecCCHHHHHHhh----cchHHHHHHHHHHhchhHHHHHHhcCc
Q 023790 163 LDGLPRSRIQAEILDQ-----LAEIDLVVNFKCADNFIVTNR----GGSLKEKLEAYAELGKPLEDYYQKQKK 226 (277)
Q Consensus 163 ldGfPrt~~qae~l~~-----~~~~d~vI~L~~~~e~l~~Rl----~~~~~~rl~~y~~~~~~l~~~y~~~~~ 226 (277)
|||||++..|++.|++ ...|+.||+|+||++++.+|+ ++.+++|++.|++++.++.++|+++++
T Consensus 79 ldGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~d~~~~i~~Rl~~y~~~~~~i~~~y~~~g~ 151 (151)
T PF00406_consen 79 LDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQDNEEVIKKRLEEYRENTEPILDYYKEQGK 151 (151)
T ss_dssp EESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHTGSHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred eeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999987 368899999999999999998 457899999999999999999998763
No 18
>PRK14530 adenylate kinase; Provisional
Probab=99.97 E-value=5.7e-30 Score=223.66 Aligned_cols=168 Identities=23% Similarity=0.431 Sum_probs=149.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhc-----CCCChhHHHHHHHHhccccchHHHHHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL-----SPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLE 151 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~-----~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~ 151 (277)
++++|+|+|+|||||||+|+.|++++|++||++|++++++. ......+. +++.+..|..+|+++...++.+.+.
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~ 80 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALS 80 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 45689999999999999999999999999999999999986 23445554 6778899999999999999988876
Q ss_pred cCCccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhc-------------------------------
Q 023790 152 DGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG------------------------------- 200 (277)
Q Consensus 152 ~~~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~------------------------------- 200 (277)
. ..+||+||||++..|++.|+....+++||+|++|.+++++|+.
T Consensus 81 ~-----~~~~IldG~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~r 155 (215)
T PRK14530 81 D-----ADGFVLDGYPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGE 155 (215)
T ss_pred c-----CCCEEEcCCCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCc
Confidence 4 3589999999999999999877789999999999999999861
Q ss_pred ---------chHHHHHHHHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 201 ---------GSLKEKLEAYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 201 ---------~~~~~rl~~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
+.+++|+..|++++.++.++|.+.++++.|||++++++|++.|.+.|..+
T Consensus 156 l~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~~ 214 (215)
T PRK14530 156 LIQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDDA 214 (215)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhcc
Confidence 23789999999999999999998888999999999999999999998754
No 19
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.96 E-value=1.3e-28 Score=209.37 Aligned_cols=162 Identities=30% Similarity=0.589 Sum_probs=149.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCccCc
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (277)
|+|+|+|+|||||||+|+.|+++++++|+|+|+++|......+++++.++.++.+|+++|++++..++..++....+ .
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~--~ 78 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADC--K 78 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcc--c
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999998643 3
Q ss_pred cEEEEcCccCCHHHHHHHHhh-----cCcCEEEEecCCHHHHHHhhcc----------hHHHHHHHHHHhchhHHHHHHh
Q 023790 159 IGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNRGG----------SLKEKLEAYAELGKPLEDYYQK 223 (277)
Q Consensus 159 ~g~IldGfPrt~~qae~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~----------~~~~rl~~y~~~~~~l~~~y~~ 223 (277)
.+||+|||||+..|++.+++. ...+.++.++++.+.+++|+.. .+++|+..|+++..|+.++|+
T Consensus 79 ~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~r~dd~~~~~~~R~~~y~~~~~pli~~y~- 157 (178)
T COG0563 79 AGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRVREDDNEETVKKRLKVYHEQTAPLIEYYS- 157 (178)
T ss_pred CeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccccccCCHHHHHHHHHHHHhcccchhhhhe-
Confidence 399999999999999999865 4779999999999999999833 458999999999999999997
Q ss_pred cCcEEEEeCCCCHHHHHHHHHHHH
Q 023790 224 QKKLLEFQVGSAPLETWQGLLTAL 247 (277)
Q Consensus 224 ~~~li~Ida~~s~eev~~~I~~~L 247 (277)
+.||+.++++++++++.+++
T Consensus 158 ----~~id~~~~i~~v~~~i~~~l 177 (178)
T COG0563 158 ----VTIDGSGEIEEVLADILKAL 177 (178)
T ss_pred ----eeccCCCCHHHHHHHHHHhh
Confidence 78999999999999998875
No 20
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.96 E-value=3.4e-27 Score=200.44 Aligned_cols=172 Identities=22% Similarity=0.397 Sum_probs=151.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCcc
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (277)
+.++|+|+|+|||||||+|+.|++++|+.++++|+++++.+..+++.++.++..+.+|..+|.+.+...+.+++.... .
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 80 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAAL-G 80 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccc-C
Confidence 346899999999999999999999999999999999999877778888999999999999999988888888876532 3
Q ss_pred CccEEEEcCccCCHHHHHHHHhh-cCcCEEEEecCCHHHHHHhhc-------------chHHHHHHHHHHhchhHHHHHH
Q 023790 157 GEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNRG-------------GSLKEKLEAYAELGKPLEDYYQ 222 (277)
Q Consensus 157 ~~~g~IldGfPrt~~qae~l~~~-~~~d~vI~L~~~~e~l~~Rl~-------------~~~~~rl~~y~~~~~~l~~~y~ 222 (277)
.+.+||+||||++..|+..+... ..|+.+|+|++|++++.+|+. +.+.+|++.|+++..++.++|+
T Consensus 81 ~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~~y~ 160 (188)
T TIGR01360 81 TSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYYE 160 (188)
T ss_pred cCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHH
Confidence 57899999999999999988653 568999999999999999982 2467899999999999999998
Q ss_pred hcCcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 223 KQKKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 223 ~~~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
..+.++.||+++++++++++|...++.
T Consensus 161 ~~~~~~~id~~~~~~~v~~~i~~~l~~ 187 (188)
T TIGR01360 161 TKGKLRKINAEGTVDDVFLQVCTAIDK 187 (188)
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 777889999999999999999998863
No 21
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.96 E-value=6.4e-28 Score=206.04 Aligned_cols=158 Identities=33% Similarity=0.546 Sum_probs=144.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCccCcc
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEI 159 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~~ 159 (277)
+|+|+|+|||||||+|+.|++++|+.|+++++++++.+...++.++.+++++.+|..+|++++..++..++.... ...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~--~~~ 78 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPD--CKK 78 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhccc--ccC
Confidence 489999999999999999999999999999999999988888999999999999999999999999999998752 468
Q ss_pred EEEEcCccCCHHHHHHHHhhc----CcCEEEEecCCHHHHHHhhc--------------------------------chH
Q 023790 160 GFILDGLPRSRIQAEILDQLA----EIDLVVNFKCADNFIVTNRG--------------------------------GSL 203 (277)
Q Consensus 160 g~IldGfPrt~~qae~l~~~~----~~d~vI~L~~~~e~l~~Rl~--------------------------------~~~ 203 (277)
+||+||||++..|++.|++.. .++++|+|+||++++.+|+. +.+
T Consensus 79 ~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~l~~r~dd~~~~i 158 (194)
T cd01428 79 GFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEETI 158 (194)
T ss_pred CEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCcCCCcccCCccccCCCCCHHHH
Confidence 899999999999999998764 78999999999999999972 146
Q ss_pred HHHHHHHHHhchhHHHHHHhcCcEEEEeCCCCHHHH
Q 023790 204 KEKLEAYAELGKPLEDYYQKQKKLLEFQVGSAPLET 239 (277)
Q Consensus 204 ~~rl~~y~~~~~~l~~~y~~~~~li~Ida~~s~eev 239 (277)
++|++.|+++..++.++|.+.+.++.||+++++++|
T Consensus 159 ~~R~~~y~~~~~~i~~~~~~~~~~~~id~~~~~~~v 194 (194)
T cd01428 159 KKRLEVYKEQTAPLIDYYKKKGKLVEIDGSGDIDEV 194 (194)
T ss_pred HHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCcCcC
Confidence 899999999999999999998999999999998764
No 22
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=99.95 E-value=2e-27 Score=207.62 Aligned_cols=172 Identities=35% Similarity=0.592 Sum_probs=158.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCcc
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (277)
++.+++++|+||+||+|+|.+|++.|++.|+++||++|+.+..++++|+.+++++..|+++|++++..++...+... .
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~--~ 91 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENP--R 91 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhcccc--c
Confidence 68999999999999999999999999999999999999999999999999999999999999999999888888876 3
Q ss_pred CccEEEEcCccCCHHHHHHHHh-hcCcCEEEEecCCHHHHHHhh------------------------------------
Q 023790 157 GEIGFILDGLPRSRIQAEILDQ-LAEIDLVVNFKCADNFIVTNR------------------------------------ 199 (277)
Q Consensus 157 ~~~g~IldGfPrt~~qae~l~~-~~~~d~vI~L~~~~e~l~~Rl------------------------------------ 199 (277)
...||++|||||+..|++.+.. ...+|.||+|+||++.+++|+
T Consensus 92 ~~~~~ildg~Prt~~qa~~l~~~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitgepL~qr 171 (235)
T KOG3078|consen 92 CQKGFILDGFPRTVQQAEELLDRIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGEPLIQR 171 (235)
T ss_pred cccccccCCCCcchHHHHHHHHccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccCCccccccccccChhhcC
Confidence 5799999999999998888654 578999999999999999987
Q ss_pred ----cchHHHHHHHHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHHcc
Q 023790 200 ----GGSLKEKLEAYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHLQH 251 (277)
Q Consensus 200 ----~~~~~~rl~~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~~~ 251 (277)
++.++.|++.|+++.+|+.+||++.+++..+++.. +++||..|...|.++-
T Consensus 172 ~dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~-~~~v~~~v~~~l~~~~ 226 (235)
T KOG3078|consen 172 EDDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK-PEEVFPNVYAFLSKKV 226 (235)
T ss_pred ccccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc-hhHhHHHHHHHHHhhh
Confidence 23468999999999999999999999999999888 9999999999998763
No 23
>PLN02842 nucleotide kinase
Probab=99.95 E-value=4.6e-27 Score=226.00 Aligned_cols=166 Identities=20% Similarity=0.388 Sum_probs=151.0
Q ss_pred EEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCccCccEE
Q 023790 82 AFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGF 161 (277)
Q Consensus 82 vi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~~g~ 161 (277)
.|+|+|||||||+|+.|+++||+.||+++++++++++.++++|+.+++++.+|+++|++++..++.+++.+..+ ..+||
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~-~~~G~ 79 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDA-KEKGW 79 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccc-cCCcE
Confidence 38999999999999999999999999999999999999999999999999999999999999999999987532 35789
Q ss_pred EEcCccCCHHHHHHHHhh-cCcCEEEEecCCHHHHHHhh------------------------------------cchHH
Q 023790 162 ILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNR------------------------------------GGSLK 204 (277)
Q Consensus 162 IldGfPrt~~qae~l~~~-~~~d~vI~L~~~~e~l~~Rl------------------------------------~~~~~ 204 (277)
||||||++..|++.|++. ..||+||+|+|+++++++|+ ++.++
T Consensus 80 ILDGfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~eE~Ik 159 (505)
T PLN02842 80 LLDGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVK 159 (505)
T ss_pred EEeCCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccccccccccCCCCCHHHHH
Confidence 999999999999999875 46899999999999999996 12578
Q ss_pred HHHHHHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 205 EKLEAYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 205 ~rl~~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
+|++.|+++..++.++|.. .++.||+++++++|+++|.+.|...
T Consensus 160 kRL~~Y~~~t~pIl~~Y~~--rl~~IDAsqs~EeVfeeI~~iL~~~ 203 (505)
T PLN02842 160 ARLQIYKKNAEAILSTYSD--IMVKIDGNRPKEVVFEEISSLLSQI 203 (505)
T ss_pred HHHHHHHHHhhhHHHhcCc--EEEEEECCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999964 6889999999999999999999864
No 24
>PRK13974 thymidylate kinase; Provisional
Probab=99.77 E-value=1.1e-17 Score=145.94 Aligned_cols=172 Identities=12% Similarity=0.065 Sum_probs=120.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccc--hhHHHHHhcCCCChhHHHHHHHHhc--cccchHHHHHHHH--HHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS--MSSIVRQDLSPRSSLHKQIANAVNR--GEVVSEDIIFGLL--SKRL 150 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is--~~dllr~~~~~~~~lg~~i~~~l~~--G~~ip~~~~~~ll--~~~l 150 (277)
++.+|+|+|++||||||+++.|++.+.....- ..+.+....+.++++|+.+++++.. |...++.....++ .++.
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~ 81 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRA 81 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999988522110 0112222234578899999999863 3334443333333 2221
Q ss_pred H------cCCccCccEEEE-----------cCccCCHH--HHHHHHhh----cCcCEEEEecCCHHHHHHhhcc----hH
Q 023790 151 E------DGYYRGEIGFIL-----------DGLPRSRI--QAEILDQL----AEIDLVVNFKCADNFIVTNRGG----SL 203 (277)
Q Consensus 151 ~------~~~~~~~~g~Il-----------dGfPrt~~--qae~l~~~----~~~d~vI~L~~~~e~l~~Rl~~----~~ 203 (277)
+ ..... .+.+|| +|+|+... +...++.. ..||++|+|+||++++.+|+.. .+
T Consensus 82 ~~~~~~i~~~l~-~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~dD~~ 160 (212)
T PRK13974 82 QHVSKIIRPALE-NGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRKPDRI 160 (212)
T ss_pred HHHHHHHHHHHH-CCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcccCch
Confidence 1 11011 223566 78887543 34555442 3699999999999999999843 46
Q ss_pred HHHHHHHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 204 KEKLEAYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 204 ~~rl~~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
+.+...|.+.+.+...+|.+.+.+++||+++++++|+++|.+.|..
T Consensus 161 e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l~~ 206 (212)
T PRK13974 161 EAEGIEFLERVAEGFALIAEERNWKVISADQSIETISNEIKETLLN 206 (212)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 6777789999999999998888999999999999999999999975
No 25
>PRK03839 putative kinase; Provisional
Probab=99.73 E-value=6.1e-17 Score=137.30 Aligned_cols=148 Identities=19% Similarity=0.229 Sum_probs=98.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCccCc
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (277)
|+|+|+|+|||||||+|+.||+++|++|+++|+++++.- ++....+ .++ ...+.+...+... ..+
T Consensus 1 m~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~-----~~~~~~~---~~~-----~~~~~l~~~~~~~--~~~ 65 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKG-----IGEEKDD---EME-----IDFDKLAYFIEEE--FKE 65 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcC-----CcccCCh---hhh-----cCHHHHHHHHHHh--ccC
Confidence 479999999999999999999999999999999987531 1111000 111 1123333333321 124
Q ss_pred cEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcchHH--HH-HHHHHHhch--hHHHHHHhcCcEEEEeCC
Q 023790 159 IGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLK--EK-LEAYAELGK--PLEDYYQKQKKLLEFQVG 233 (277)
Q Consensus 159 ~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~~~--~r-l~~y~~~~~--~l~~~y~~~~~li~Ida~ 233 (277)
.+||+||+... ...++.+|+|+++++++.+|+..+-. .. .+....... .+.+.|...+.++.||++
T Consensus 66 ~~vIidG~~~~---------l~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~Id~~ 136 (180)
T PRK03839 66 KNVVLDGHLSH---------LLPVDYVIVLRAHPKIIKERLKERGYSKKKILENVEAELVDVCLCEALEEKEKVIEVDTT 136 (180)
T ss_pred CCEEEEecccc---------ccCCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECC
Confidence 56999997532 23589999999999999999843321 11 111112222 233556666778899986
Q ss_pred -CCHHHHHHHHHHHHHHc
Q 023790 234 -SAPLETWQGLLTALHLQ 250 (277)
Q Consensus 234 -~s~eev~~~I~~~L~~~ 250 (277)
.++++++++|.+.+...
T Consensus 137 ~~s~eev~~~I~~~l~~~ 154 (180)
T PRK03839 137 GKTPEEVVEEILELIKSG 154 (180)
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 79999999999999864
No 26
>PRK01184 hypothetical protein; Provisional
Probab=99.71 E-value=1.4e-15 Score=129.33 Aligned_cols=162 Identities=12% Similarity=0.150 Sum_probs=106.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCC-CC-----hhHHHHHHHHhccccchHHHHHHHHHHHHH
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP-RS-----SLHKQIANAVNRGEVVSEDIIFGLLSKRLE 151 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~-~~-----~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~ 151 (277)
+++|+|+|+|||||||+++ +++++|++++++||++|+++.. +. .++..+.+... .+.+ +.+..++...+.
T Consensus 1 ~~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~--~~~~-~~~~~~~~~~i~ 76 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRK--ELGM-DAVAKRTVPKIR 76 (184)
T ss_pred CcEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHH--HHCh-HHHHHHHHHHHH
Confidence 4589999999999999987 7889999999999999998632 21 24444443322 1222 233344444554
Q ss_pred cCCccCccEEEEcCccCCHHHHHHHHhhcC-cCEEEEecCCHHHHHHhhcchHH----HHHHHHHHhc-----hhHHHHH
Q 023790 152 DGYYRGEIGFILDGLPRSRIQAEILDQLAE-IDLVVNFKCADNFIVTNRGGSLK----EKLEAYAELG-----KPLEDYY 221 (277)
Q Consensus 152 ~~~~~~~~g~IldGfPrt~~qae~l~~~~~-~d~vI~L~~~~e~l~~Rl~~~~~----~rl~~y~~~~-----~~l~~~y 221 (277)
.. .+..+|+||+ ++..|.+.+.+..+ +..+|+++||++++.+|+..+-. ...+.+.+.. -++.+.+
T Consensus 77 ~~---~~~~vvidg~-r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~~~~~~~~ 152 (184)
T PRK01184 77 EK---GDEVVVIDGV-RGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDERELSWGIGEVI 152 (184)
T ss_pred hc---CCCcEEEeCC-CCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhccCHHHHH
Confidence 42 3578999999 78888888876543 56899999999999999843210 0011222111 1133344
Q ss_pred HhcCcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 222 QKQKKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 222 ~~~~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
...+. .|+.+.+++++.++|.+.++.
T Consensus 153 ~~ad~--vI~N~~~~~~l~~~v~~~~~~ 178 (184)
T PRK01184 153 ALADY--MIVNDSTLEEFRARVRKLLER 178 (184)
T ss_pred HhcCE--EEeCCCCHHHHHHHHHHHHHH
Confidence 33333 345577899999999998764
No 27
>PRK13973 thymidylate kinase; Provisional
Probab=99.70 E-value=4.6e-16 Score=135.87 Aligned_cols=164 Identities=13% Similarity=0.179 Sum_probs=102.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh---CCCccch--------hHHHHHhcCCC--ChhHHHHHHHHhccccchHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL---EVPRISM--------SSIVRQDLSPR--SSLHKQIANAVNRGEVVSEDIIF 143 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~---g~~~Is~--------~dllr~~~~~~--~~lg~~i~~~l~~G~~ip~~~~~ 143 (277)
+++.|+|+|++||||||+++.|++++ |..++.+ ++++|+.+..+ ..++..+...+-.+ ...+.+.
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a--~r~~~~~ 79 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAA--ARDDHVE 79 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHH--HHHHHHH
Confidence 57899999999999999999999999 8877766 56666654321 11222222222222 1223444
Q ss_pred HHHHHHHHcCCccCccEEEEc----------CccCC--HHHHHHHHhh----cCcCEEEEecCCHHHHHHhhcc------
Q 023790 144 GLLSKRLEDGYYRGEIGFILD----------GLPRS--RIQAEILDQL----AEIDLVVNFKCADNFIVTNRGG------ 201 (277)
Q Consensus 144 ~ll~~~l~~~~~~~~~g~Ild----------GfPrt--~~qae~l~~~----~~~d~vI~L~~~~e~l~~Rl~~------ 201 (277)
..+...+..+ .-+|.| |+++. ..+.+.++.. ..||++|+|+||++++.+|+..
T Consensus 80 ~~i~~~l~~g-----~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~ 154 (213)
T PRK13973 80 EVIRPALARG-----KIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDT 154 (213)
T ss_pred HHHHHHHHCC-----CEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCc
Confidence 5555566543 334444 44432 2355555542 4699999999999999999832
Q ss_pred --hHHHHHHHHHHhchhHHHHHHh-----cCcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 202 --SLKEKLEAYAELGKPLEDYYQK-----QKKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 202 --~~~~rl~~y~~~~~~l~~~y~~-----~~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
+++++-..|.+. +...|.+ .++++.||+++++++|+++|.+++...
T Consensus 155 ~~~~e~~~~~~~~~---~~~~y~~l~~~~~~~~~~Ida~~~~e~V~~~I~~~i~~~ 207 (213)
T PRK13973 155 PDRFEKEDLAFHEK---RREAFLQIAAQEPERCVVIDATASPEAVAAEIWAAVDQR 207 (213)
T ss_pred cCchhhchHHHHHH---HHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 222211122222 1122211 236888999999999999999999754
No 28
>PRK08356 hypothetical protein; Provisional
Probab=99.70 E-value=3.3e-16 Score=134.84 Aligned_cols=162 Identities=17% Similarity=0.169 Sum_probs=105.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCC----CC---hhHHH----HHHHHhccccchH----HH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP----RS---SLHKQ----IANAVNRGEVVSE----DI 141 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~----~~---~lg~~----i~~~l~~G~~ip~----~~ 141 (277)
..++|+|+|+|||||||+|+.|+ ++|+++|++++.++..... .. ..+.. ..+++..|..+++ ++
T Consensus 4 ~~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~ 82 (195)
T PRK08356 4 EKMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDI 82 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHH
Confidence 34789999999999999999996 5899999999866543221 11 22222 2456667777774 55
Q ss_pred HHHHHHHHHHcCCccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcchHHH------HHHHHHHhch
Q 023790 142 IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLKE------KLEAYAELGK 215 (277)
Q Consensus 142 ~~~ll~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~~~~------rl~~y~~~~~ 215 (277)
+.+++.+.+.. ...|++||+ ++..|++.|.+. ...+|++++|++++.+|+..+-.. ..+.+.....
T Consensus 83 ~~~~~~~~~~~-----~~~ividG~-r~~~q~~~l~~~--~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~ 154 (195)
T PRK08356 83 LIRLAVDKKRN-----CKNIAIDGV-RSRGEVEAIKRM--GGKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKFDE 154 (195)
T ss_pred HHHHHHHHhcc-----CCeEEEcCc-CCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence 55666555532 235999999 999999998763 358999999999999998322100 1111111111
Q ss_pred ------hHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 216 ------PLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 216 ------~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
....+.+..+ ++.+| +.+++++.++|.+++..
T Consensus 155 ~~~~l~~~~~~~~~aD-~vI~N-~~~~e~~~~~i~~~~~~ 192 (195)
T PRK08356 155 WEEKLYHTTKLKDKAD-FVIVN-EGTLEELRKKVEEILRE 192 (195)
T ss_pred HHHHhhhhhhHHHhCc-EEEEC-CCCHHHHHHHHHHHHHH
Confidence 1111111122 33344 68999999999998865
No 29
>PRK13949 shikimate kinase; Provisional
Probab=99.66 E-value=4.2e-15 Score=125.47 Aligned_cols=152 Identities=16% Similarity=0.237 Sum_probs=103.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHH-hccccchHHHHHHHHHHHHHcCCccC
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV-NRGEVVSEDIIFGLLSKRLEDGYYRG 157 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l-~~G~~ip~~~~~~ll~~~l~~~~~~~ 157 (277)
.+|+|+|+|||||||+++.||+.++++++++|+++.+.... .+.+.+ ..|+....+...+++.+ +..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~------~~~~~~~~~g~~~fr~~e~~~l~~-l~~----- 69 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHK------TVGDIFAERGEAVFRELERNMLHE-VAE----- 69 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCc------cHHHHHHHhCHHHHHHHHHHHHHH-HHh-----
Confidence 47999999999999999999999999999999988765432 233333 24555555565666655 332
Q ss_pred ccEEEE-c--CccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcc----h--H-----HHHHHHHHHhchhHHHHHHh
Q 023790 158 EIGFIL-D--GLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG----S--L-----KEKLEAYAELGKPLEDYYQK 223 (277)
Q Consensus 158 ~~g~Il-d--GfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~----~--~-----~~rl~~y~~~~~~l~~~y~~ 223 (277)
..++|+ + |.|....+.+.|.+ .+++|||++|.+++.+|+.. + + ....+.+.+.......+|+.
T Consensus 70 ~~~~vis~Ggg~~~~~~~~~~l~~---~~~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~l~~~R~~~Y~~ 146 (169)
T PRK13949 70 FEDVVISTGGGAPCFFDNMELMNA---SGTTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIEALEKRAPFYRQ 146 (169)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHh---CCeEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHh
Confidence 234555 4 45666666666653 57899999999999999832 1 1 11122334444555667776
Q ss_pred cCcEEEEeC-CCCHHHHHHHHHHHH
Q 023790 224 QKKLLEFQV-GSAPLETWQGLLTAL 247 (277)
Q Consensus 224 ~~~li~Ida-~~s~eev~~~I~~~L 247 (277)
.+ +.||+ +.++++++++|.+.|
T Consensus 147 ad--~~id~~~~~~~e~~~~I~~~~ 169 (169)
T PRK13949 147 AK--IIFNADKLEDESQIEQLVQRL 169 (169)
T ss_pred CC--EEEECCCCCHHHHHHHHHHhC
Confidence 44 45564 568999999988653
No 30
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.65 E-value=3.2e-15 Score=125.51 Aligned_cols=158 Identities=18% Similarity=0.186 Sum_probs=106.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHh-ccccchHHHHHHHHHHHHHcCC--
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGY-- 154 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~-- 154 (277)
.+.|+++|++||||||+++.||+.+|++++|+|.+|.+.. +..+.+.+. .|+....+...+.+.+.+....
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~------g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~V 75 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRT------GMSIAEIFEEEGEEGFRRLETEVLKELLEEDNAV 75 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHH------CcCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeE
Confidence 4679999999999999999999999999999999998764 355666666 4776677777777776666531
Q ss_pred ccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcch-------HHHHHHHHHHhchhHHHHHHhcCcE
Q 023790 155 YRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS-------LKEKLEAYAELGKPLEDYYQKQKKL 227 (277)
Q Consensus 155 ~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~-------~~~rl~~y~~~~~~l~~~y~~~~~l 227 (277)
+..+.|.|++ .+....|. .-..||||++|.+++++|+... -.++-+.+++.......+|++.. .
T Consensus 76 iaTGGG~v~~-----~enr~~l~---~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~Y~e~a-~ 146 (172)
T COG0703 76 IATGGGAVLS-----EENRNLLK---KRGIVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLEERQPLYREVA-D 146 (172)
T ss_pred EECCCccccC-----HHHHHHHH---hCCeEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHHHHHHHHHHhC-c
Confidence 1223333332 22233333 3458999999999999999421 01121223333444455576543 3
Q ss_pred EEEeCCCCHHHHHHHHHHHHHHc
Q 023790 228 LEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 228 i~Ida~~s~eev~~~I~~~L~~~ 250 (277)
+.++++...+++.++|...|...
T Consensus 147 ~~~~~~~~~~~v~~~i~~~l~~~ 169 (172)
T COG0703 147 FIIDTDDRSEEVVEEILEALEGS 169 (172)
T ss_pred EEecCCCCcHHHHHHHHHHHHHh
Confidence 45566655599999999988754
No 31
>PLN02924 thymidylate kinase
Probab=99.64 E-value=1.7e-14 Score=126.81 Aligned_cols=176 Identities=14% Similarity=0.161 Sum_probs=109.6
Q ss_pred CCCCccCCCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHH-HHHHHH
Q 023790 69 DTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDI-IFGLLS 147 (277)
Q Consensus 69 ~~~~~~~~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~-~~~ll~ 147 (277)
++++..+++++.|+|+|++||||||+++.|++++....+.+ ..+++ ...+++.|+.+++.+..+....... ..-...
T Consensus 7 ~~~~~~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~e-p~~~~~~g~~ir~~l~~~~~~~~~~~~llf~a 84 (220)
T PLN02924 7 ETESSVESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWRF-PDRTTSVGQMISAYLSNKSQLDDRAIHLLFSA 84 (220)
T ss_pred CCCCCcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeeeC-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 34445557899999999999999999999999997655544 22232 2345788999999887654332221 111111
Q ss_pred HHHHcC-----CccCccEEEEcCccCCHH--H---------HHHHHh-hcCcCEEEEecCCHHHHHHhhcchHHHHHH--
Q 023790 148 KRLEDG-----YYRGEIGFILDGLPRSRI--Q---------AEILDQ-LAEIDLVVNFKCADNFIVTNRGGSLKEKLE-- 208 (277)
Q Consensus 148 ~~l~~~-----~~~~~~g~IldGfPrt~~--q---------ae~l~~-~~~~d~vI~L~~~~e~l~~Rl~~~~~~rl~-- 208 (277)
++.+.. ....+..+|.|.|..+.. | ...++. ...||++|+|++|++++.+|.... .++++
T Consensus 85 dR~~~~~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~-~~~~E~~ 163 (220)
T PLN02924 85 NRWEKRSLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYG-GERYEKL 163 (220)
T ss_pred HHHHHHHHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccC-ccccccH
Confidence 111110 012356788898765321 2 111221 247999999999999999997321 11111
Q ss_pred HHHHhchhHHHHHHh--cCcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 209 AYAELGKPLEDYYQK--QKKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 209 ~y~~~~~~l~~~y~~--~~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
.|.+. +...|.+ ...++.||+++++++|+++|.+.+...
T Consensus 164 ~~~~r---v~~~Y~~la~~~~~vIDa~~sieeV~~~I~~~I~~~ 204 (220)
T PLN02924 164 EFQKK---VAKRFQTLRDSSWKIIDASQSIEEVEKKIREVVLDT 204 (220)
T ss_pred HHHHH---HHHHHHHHhhcCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 23322 2223322 135778899999999999999998764
No 32
>PRK06217 hypothetical protein; Validated
Probab=99.61 E-value=1.8e-14 Score=122.82 Aligned_cols=151 Identities=16% Similarity=0.211 Sum_probs=99.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCccC
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRG 157 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~ 157 (277)
+++|+|+|+|||||||+|+.|++++|++|+++|++++.. .+.+++. ..+.+.....+.+.+..
T Consensus 1 ~~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~--~~~~~~~----------~~~~~~~~~~~~~~~~~----- 63 (183)
T PRK06217 1 MMRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLP--TDPPFTT----------KRPPEERLRLLLEDLRP----- 63 (183)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeecc--CCCCccc----------cCCHHHHHHHHHHHHhc-----
Confidence 468999999999999999999999999999999988743 1111111 12334444444444432
Q ss_pred ccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcchH-----------------H----HHHHHHHHh---
Q 023790 158 EIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSL-----------------K----EKLEAYAEL--- 213 (277)
Q Consensus 158 ~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~~-----------------~----~rl~~y~~~--- 213 (277)
+.+||+||++... .+.+. ..+|.+|+|++|.+++++|+..+. . ++...|...
T Consensus 64 ~~~~vi~G~~~~~--~~~~~--~~~d~~i~Ld~~~~~~~~Rl~~R~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 139 (183)
T PRK06217 64 REGWVLSGSALGW--GDPLE--PLFDLVVFLTIPPELRLERLRLREFQRYGNRILPGGDMHKASLEFLEWAASYDTAGPE 139 (183)
T ss_pred CCCEEEEccHHHH--HHHHH--hhCCEEEEEECCHHHHHHHHHcCcccccCcccCCCCCHHHHHHHHHHHHHhccCCCCC
Confidence 3579999998542 22222 247899999999999999983221 1 111122210
Q ss_pred chhH---HHHHHhc-CcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 214 GKPL---EDYYQKQ-KKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 214 ~~~l---~~~y~~~-~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
...+ ..++... ..++.+++..+++++.++|.+.|..
T Consensus 140 ~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~i~~~~~~ 179 (183)
T PRK06217 140 GRSLAAHEQWLADQSCPVLRLDGDLTVEDLLDEVLDHLAS 179 (183)
T ss_pred cccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHHhc
Confidence 0112 2222322 4677888889999999999998854
No 33
>PRK08233 hypothetical protein; Provisional
Probab=99.60 E-value=2.6e-14 Score=120.56 Aligned_cols=166 Identities=13% Similarity=0.159 Sum_probs=97.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCcc
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (277)
++++|+|.|+|||||||+|+.|++.++...+...|..+.... ...+.+.+..|... +......+.+.+......
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 75 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNC-----PEDICKWIDKGANY-SEWVLTPLIKDIQELIAK 75 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccC-----chhhhhhhhccCCh-hhhhhHHHHHHHHHHHcC
Confidence 568899999999999999999999997443333333322111 11233333344333 222223333333321101
Q ss_pred CccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcc---------hHHHHHHHHHHhchhHHH-HHHh--c
Q 023790 157 GEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG---------SLKEKLEAYAELGKPLED-YYQK--Q 224 (277)
Q Consensus 157 ~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~---------~~~~rl~~y~~~~~~l~~-~y~~--~ 224 (277)
....+|+.++|......+ +.. .+|++|+|++|.+++.+|... .+.+++..|.....+... ++.+ .
T Consensus 76 ~~~~~vivd~~~~~~~~~-~~~--~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 152 (182)
T PRK08233 76 SNVDYIIVDYPFAYLNSE-MRQ--FIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEALHTVKP 152 (182)
T ss_pred CCceEEEEeeehhhccHH-HHH--HcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcCcc
Confidence 123555555565433222 222 378999999999999988621 234556666655555422 1121 1
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHHHHcc
Q 023790 225 KKLLEFQVGSAPLETWQGLLTALHLQH 251 (277)
Q Consensus 225 ~~li~Ida~~s~eev~~~I~~~L~~~~ 251 (277)
...+.||++.++++++++|...|....
T Consensus 153 ~~~~vId~~~~~e~i~~~i~~~l~~~~ 179 (182)
T PRK08233 153 NADIVLDGALSVEEIINQIEEELYRRE 179 (182)
T ss_pred CCeEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 346778999999999999999998654
No 34
>PRK13975 thymidylate kinase; Provisional
Probab=99.58 E-value=1.8e-13 Score=117.19 Aligned_cols=161 Identities=15% Similarity=0.155 Sum_probs=95.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHH------HH
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKR------LE 151 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~------l~ 151 (277)
++.|+|+|++||||||+++.|+++++..+. ..+.++.+|+.+++.+..+...+..+..-...++ +.
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~--------~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~ 73 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWT--------CEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIE 73 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCee--------ECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999985321 1123345666777766554222211111111111 11
Q ss_pred cCCccCccEEEEcCccCCH-H-H---------HHHHHh-hcCcCEEEEecCCHHHHHHhhcchH----------HHHHHH
Q 023790 152 DGYYRGEIGFILDGLPRSR-I-Q---------AEILDQ-LAEIDLVVNFKCADNFIVTNRGGSL----------KEKLEA 209 (277)
Q Consensus 152 ~~~~~~~~g~IldGfPrt~-~-q---------ae~l~~-~~~~d~vI~L~~~~e~l~~Rl~~~~----------~~rl~~ 209 (277)
.. . ....+|.|++..+. . | ...+.. ...||++|+|++|++++.+|+..+- ++..+.
T Consensus 74 ~~-~-~~~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~~ 151 (196)
T PRK13975 74 ED-L-KKRDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDKEIFEKKEFLKKVQEK 151 (196)
T ss_pred HH-H-cCCEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCccccchHHHHHHHHHH
Confidence 11 1 13568889775431 1 1 111222 2468999999999999999985331 112222
Q ss_pred HHHhchhHHHHHHhcCcEEEEeCC-CCHHHHHHHHHHHHHHc
Q 023790 210 YAELGKPLEDYYQKQKKLLEFQVG-SAPLETWQGLLTALHLQ 250 (277)
Q Consensus 210 y~~~~~~l~~~y~~~~~li~Ida~-~s~eev~~~I~~~L~~~ 250 (277)
|.+... ...|.....++.||++ .++++++++|.+.+..+
T Consensus 152 y~~~~~--~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~~~ 191 (196)
T PRK13975 152 YLELAN--NEKFMPKYGFIVIDTTNKSIEEVFNEILNKIKDK 191 (196)
T ss_pred HHHHHh--hcccCCcCCEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 322221 1112223357889985 89999999999998765
No 35
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.58 E-value=1.5e-14 Score=119.46 Aligned_cols=158 Identities=17% Similarity=0.101 Sum_probs=95.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccch--HHHHHHHHHHHHHcCCcc
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS--EDIIFGLLSKRLEDGYYR 156 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip--~~~~~~ll~~~l~~~~~~ 156 (277)
|+|.|.|+|||||||+|+.||+++|++|+|.|.++|+.... .|..+.++-.-.+.-| +..+.+......
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e---~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a------ 71 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARE---RGMSLEEFSRYAEEDPEIDKEIDRRQKELA------ 71 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHH---cCCCHHHHHHHHhcCchhhHHHHHHHHHHH------
Confidence 57999999999999999999999999999999999987542 1222222222122222 111222222211
Q ss_pred CccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcch----HH-HHHHHH---HHhchhHHHHHH-hc-C-
Q 023790 157 GEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS----LK-EKLEAY---AELGKPLEDYYQ-KQ-K- 225 (277)
Q Consensus 157 ~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~----~~-~rl~~y---~~~~~~l~~~y~-~~-~- 225 (277)
...++|++|- -+-++.+ ..+|+.|||.+|.++..+|+..+ ++ .+-+.. +.+.+-..++|. +. +
T Consensus 72 ~~~nvVlegr-----LA~Wi~k-~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE~se~kRY~~~YgIDidDl 145 (179)
T COG1102 72 KEGNVVLEGR-----LAGWIVR-EYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVEREESEKKRYKKIYGIDIDDL 145 (179)
T ss_pred HcCCeEEhhh-----hHHHHhc-cccceEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence 2467889874 1233332 46899999999999999998221 11 010111 111122334442 11 1
Q ss_pred --cEEEEeC-CCCHHHHHHHHHHHHHHcc
Q 023790 226 --KLLEFQV-GSAPLETWQGLLTALHLQH 251 (277)
Q Consensus 226 --~li~Ida-~~s~eev~~~I~~~L~~~~ 251 (277)
.-++||+ ..++++|+.-|..++...+
T Consensus 146 SiyDLVinTs~~~~~~v~~il~~aid~~~ 174 (179)
T COG1102 146 SIYDLVINTSKWDPEEVFLILLDAIDALS 174 (179)
T ss_pred eeeEEEEecccCCHHHHHHHHHHHHHhhc
Confidence 1245675 5889999999999887654
No 36
>PRK13948 shikimate kinase; Provisional
Probab=99.57 E-value=1.1e-13 Score=118.33 Aligned_cols=158 Identities=16% Similarity=0.084 Sum_probs=103.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHh-ccccchHHHHHHHHHHHHHcCC
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGY 154 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~ 154 (277)
.++..|+++|++||||||+++.|++++|.++|++|.++++.. |..+.+.+. .|+....+...+++...+..
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~------g~si~~if~~~Ge~~fR~~E~~~l~~l~~~-- 79 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVT------GKSIPEIFRHLGEAYFRRCEAEVVRRLTRL-- 79 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHH------hCCHHHHHHHhCHHHHHHHHHHHHHHHHhc--
Confidence 366789999999999999999999999999999998887653 334444443 46555555556666554432
Q ss_pred ccCccEEEEc--CccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcch----HH--HHHHHHHHhchhHHHHHHhcCc
Q 023790 155 YRGEIGFILD--GLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS----LK--EKLEAYAELGKPLEDYYQKQKK 226 (277)
Q Consensus 155 ~~~~~g~Ild--GfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~----~~--~rl~~y~~~~~~l~~~y~~~~~ 226 (277)
...+|-- |.+........+. ....+|+|+++.+++.+|+... +. ...+...+.......+|...+
T Consensus 80 ---~~~VIa~GgG~v~~~~n~~~l~---~~g~vV~L~~~~e~l~~Rl~~~~RPll~~~~~~~~l~~l~~~R~~~Y~~a~- 152 (182)
T PRK13948 80 ---DYAVISLGGGTFMHEENRRKLL---SRGPVVVLWASPETIYERTRPGDRPLLQVEDPLGRIRTLLNEREPVYRQAT- 152 (182)
T ss_pred ---CCeEEECCCcEEcCHHHHHHHH---cCCeEEEEECCHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHhCC-
Confidence 1222322 3333333333443 3467999999999999999321 10 112233334444556675433
Q ss_pred EEEEeC-CCCHHHHHHHHHHHHHH
Q 023790 227 LLEFQV-GSAPLETWQGLLTALHL 249 (277)
Q Consensus 227 li~Ida-~~s~eev~~~I~~~L~~ 249 (277)
++|++ +.+++++.++|.+.+..
T Consensus 153 -~~i~t~~~~~~ei~~~i~~~l~~ 175 (182)
T PRK13948 153 -IHVSTDGRRSEEVVEEIVEKLWA 175 (182)
T ss_pred -EEEECCCCCHHHHHHHHHHHHHH
Confidence 34554 58999999999999876
No 37
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.57 E-value=1.8e-13 Score=119.15 Aligned_cols=171 Identities=16% Similarity=0.181 Sum_probs=107.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhcc-ccc-hHHHHHHHHHHHHHc--
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG-EVV-SEDIIFGLLSKRLED-- 152 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G-~~i-p~~~~~~ll~~~l~~-- 152 (277)
+++.|+|.|+.||||||+++.|++++.-..+ +++....+.++++|+.+++.+.++ ..+ |.....-...++.++
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~---~v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~ 78 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGI---KVVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLE 78 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCC---eEEEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999998844332 222233467799999999998876 233 322221111222211
Q ss_pred ----CCccCccEEEEcCccCCHH--H----------HHHHHhh-c---CcCEEEEecCCHHHHHHhhcc------hHHHH
Q 023790 153 ----GYYRGEIGFILDGLPRSRI--Q----------AEILDQL-A---EIDLVVNFKCADNFIVTNRGG------SLKEK 206 (277)
Q Consensus 153 ----~~~~~~~g~IldGfPrt~~--q----------ae~l~~~-~---~~d~vI~L~~~~e~l~~Rl~~------~~~~r 206 (277)
..+..+..+|.|.|-.+.. | ...++++ . .||++++|++|+++.++|+.. +++..
T Consensus 79 ~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~~~r~E~~ 158 (208)
T COG0125 79 EVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGELRDRFEKE 158 (208)
T ss_pred HHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCccchhhhH
Confidence 1112345677786643321 2 2222233 2 689999999999999999943 23222
Q ss_pred HHHHHHhchhH-HHHHHhc-CcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 207 LEAYAELGKPL-EDYYQKQ-KKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 207 l~~y~~~~~~l-~~~y~~~-~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
-..|++.+... .+...+. +.+++||++.++++|.++|.+.+...
T Consensus 159 ~~~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l~~~ 204 (208)
T COG0125 159 DDEFLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEILKILKER 204 (208)
T ss_pred HHHHHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHHHHHHHHHHHh
Confidence 22233332221 1222222 35899999999999999999998764
No 38
>PRK13947 shikimate kinase; Provisional
Probab=99.54 E-value=2.3e-13 Score=114.02 Aligned_cols=153 Identities=18% Similarity=0.158 Sum_probs=92.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHh-ccccchHHHHHHHHHHHHHcCCccC
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYYRG 157 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~~~ 157 (277)
+.|+|+|+|||||||+|+.||+++|+++++.|.++++.. +.+ +.+.+. .|+....+....++.. +...
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~--g~~----~~~~~~~~ge~~~~~~e~~~~~~-l~~~---- 70 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMT--GMT----VAEIFEKDGEVRFRSEEKLLVKK-LARL---- 70 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhc--CCc----HHHHHHHhChHHHHHHHHHHHHH-Hhhc----
Confidence 469999999999999999999999999999998887653 222 222232 2333333333344433 3221
Q ss_pred ccEEEEcC--ccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcch----------HHHHHHHHHHhchhHHHHHHhcC
Q 023790 158 EIGFILDG--LPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS----------LKEKLEAYAELGKPLEDYYQKQK 225 (277)
Q Consensus 158 ~~g~IldG--fPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~----------~~~rl~~y~~~~~~l~~~y~~~~ 225 (277)
...+|-.| .+........+.+ .+.+|+|+++++.+.+|+..+ ..+++. +.......+|+..+
T Consensus 71 ~~~vi~~g~g~vl~~~~~~~l~~---~~~vv~L~~~~~~l~~Rl~~r~~rp~~~~~~~~~~i~---~~~~~r~~~y~~ad 144 (171)
T PRK13947 71 KNLVIATGGGVVLNPENVVQLRK---NGVVICLKARPEVILRRVGKKKSRPLLMVGDPEERIK---ELLKEREPFYDFAD 144 (171)
T ss_pred CCeEEECCCCCcCCHHHHHHHHh---CCEEEEEECCHHHHHHHhcCCCCCCCCCCCChHHHHH---HHHHHHHHHHHhcC
Confidence 12222122 2333333444443 467999999999999998421 122222 22222334554333
Q ss_pred cEEEEe-CCCCHHHHHHHHHH-HHHHc
Q 023790 226 KLLEFQ-VGSAPLETWQGLLT-ALHLQ 250 (277)
Q Consensus 226 ~li~Id-a~~s~eev~~~I~~-~L~~~ 250 (277)
+.|| ++.+++++.++|.+ .+.++
T Consensus 145 --~~Idt~~~~~~~i~~~I~~~~~~~~ 169 (171)
T PRK13947 145 --YTIDTGDMTIDEVAEEIIKAYLKLK 169 (171)
T ss_pred --EEEECCCCCHHHHHHHHHHHHHhhh
Confidence 3344 47899999999999 66554
No 39
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.53 E-value=1.1e-12 Score=110.07 Aligned_cols=155 Identities=13% Similarity=0.110 Sum_probs=94.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHh-ccccchHHHHHHHHHHHHHcCCccC
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYYRG 157 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~~~ 157 (277)
..|+|+|+|||||||+|+.||+++|+++++.|.++.... +... .+++. .|.....+...+++. .+..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~--g~~~----~~~~~~~g~~~~~~~e~~~~~-~~~~----- 70 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTS--NMTV----AEIVEREGWAGFRARESAALE-AVTA----- 70 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHh--CCCH----HHHHHHHCHHHHHHHHHHHHH-HhcC-----
Confidence 568999999999999999999999999999988886653 2222 22222 222112222233332 2221
Q ss_pred ccEEEEcC--ccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcchHH---------HH-HHHHHHhchhHHHHHHhcC
Q 023790 158 EIGFILDG--LPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLK---------EK-LEAYAELGKPLEDYYQKQK 225 (277)
Q Consensus 158 ~~g~IldG--fPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~~~---------~r-l~~y~~~~~~l~~~y~~~~ 225 (277)
...+|-.| ++......+.+. ..+++|+|++|++++.+|+..+-+ .. .+...+......+.|.+..
T Consensus 71 ~~~vi~~ggg~vl~~~~~~~l~---~~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~~y~~~a 147 (171)
T PRK03731 71 PSTVIATGGGIILTEENRHFMR---NNGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAEREALYREVA 147 (171)
T ss_pred CCeEEECCCCccCCHHHHHHHH---hCCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHHHHHHHhC
Confidence 22233333 333333344443 367899999999999999843210 00 1112222233445565432
Q ss_pred cEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 226 KLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 226 ~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
.++||+++++++++++|.+.+.+
T Consensus 148 -~~~Id~~~~~e~v~~~i~~~l~~ 170 (171)
T PRK03731 148 -HHIIDATQPPSQVVSEILSALAQ 170 (171)
T ss_pred -CEEEcCCCCHHHHHHHHHHHHhc
Confidence 36789999999999999998864
No 40
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.52 E-value=8.1e-14 Score=127.13 Aligned_cols=153 Identities=12% Similarity=0.090 Sum_probs=98.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh-CCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCcc
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~-g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (277)
++.|++.|+|||||||+|+.|++++ ++.+++.|++ ++.+......+.. .+...++..-.......+...+.
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~-r~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~----- 73 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDL-RQSLFGHGEWGEY--KFTKEKEDLVTKAQEAAALAALK----- 73 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHH-HHHhcCCCccccc--ccChHHHHHHHHHHHHHHHHHHH-----
Confidence 4678999999999999999999999 9999999665 4443221111110 00000000001222333333333
Q ss_pred CccEEEEcCccCCHHHHHHHHhh---cCcC-EEEEecCCHHHHHHhhcc---------hHH---HHHHHHHHhchhHHHH
Q 023790 157 GEIGFILDGLPRSRIQAEILDQL---AEID-LVVNFKCADNFIVTNRGG---------SLK---EKLEAYAELGKPLEDY 220 (277)
Q Consensus 157 ~~~g~IldGfPrt~~qae~l~~~---~~~d-~vI~L~~~~e~l~~Rl~~---------~~~---~rl~~y~~~~~~l~~~ 220 (277)
.+..+|+|+++.+..+.+.+... .... .+|+|++|.+++.+|+.. .++ +|++.|...+.|+...
T Consensus 74 ~g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~~~~~i~~~~~~~~~~~~~~~p~~~~ 153 (300)
T PHA02530 74 SGKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGERAVPEDVLRSMFKQMKEYRGLVWPVYTA 153 (300)
T ss_pred cCCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCcCCCCHHHHHHHHHHHHHhcCCCCceecc
Confidence 24679999999988887766543 2233 379999999999999832 334 7777888887888665
Q ss_pred HHhcCcEEEEeCCCCHHH
Q 023790 221 YQKQKKLLEFQVGSAPLE 238 (277)
Q Consensus 221 y~~~~~li~Ida~~s~ee 238 (277)
+.....++.+|.+.++.+
T Consensus 154 ~~~~~~~~~~D~dgtl~~ 171 (300)
T PHA02530 154 DPGLPKAVIFDIDGTLAK 171 (300)
T ss_pred CCCCCCEEEEECCCcCcC
Confidence 654446677776666543
No 41
>PRK13946 shikimate kinase; Provisional
Probab=99.52 E-value=6.6e-13 Score=113.33 Aligned_cols=161 Identities=14% Similarity=0.089 Sum_probs=100.7
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCC
Q 023790 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY 154 (277)
Q Consensus 75 ~~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~ 154 (277)
+..++.|+|+|+|||||||+++.||+++|++++++|.++.+.. +.+..+.+.. .|+....+...+++...+..
T Consensus 7 ~~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~--g~~~~e~~~~---~ge~~~~~~e~~~l~~l~~~-- 79 (184)
T PRK13946 7 ALGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAA--RMTIAEIFAA---YGEPEFRDLERRVIARLLKG-- 79 (184)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh--CCCHHHHHHH---HCHHHHHHHHHHHHHHHHhc--
Confidence 3566789999999999999999999999999999988776653 2233222221 23332333444555443332
Q ss_pred ccCccEEEEcCc--cCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcchH-------HHHHHHHHHhchhHHHHHHhcC
Q 023790 155 YRGEIGFILDGL--PRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSL-------KEKLEAYAELGKPLEDYYQKQK 225 (277)
Q Consensus 155 ~~~~~g~IldGf--Prt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~~-------~~rl~~y~~~~~~l~~~y~~~~ 225 (277)
+..+|..|. +......+.|. ..+++|||++|.+++.+|+..+- ..-.+.+++.......+|...+
T Consensus 80 ---~~~Vi~~ggg~~~~~~~r~~l~---~~~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~~~y~~~d 153 (184)
T PRK13946 80 ---GPLVLATGGGAFMNEETRAAIA---EKGISVWLKADLDVLWERVSRRDTRPLLRTADPKETLARLMEERYPVYAEAD 153 (184)
T ss_pred ---CCeEEECCCCCcCCHHHHHHHH---cCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHHHhCC
Confidence 234555542 23333334443 24689999999999999994321 1112333444444455666533
Q ss_pred cEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 226 KLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 226 ~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
+.....+.+++++++.|.+.+..
T Consensus 154 -l~i~~~~~~~~~~~~~i~~~i~~ 176 (184)
T PRK13946 154 -LTVASRDVPKEVMADEVIEALAA 176 (184)
T ss_pred -EEEECCCCCHHHHHHHHHHHHHH
Confidence 33334578999999999999865
No 42
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.52 E-value=8.5e-13 Score=112.87 Aligned_cols=156 Identities=16% Similarity=0.141 Sum_probs=90.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCC---CccchhHHHHHhcCCCChhHHHHHHHHhcccc--chHH-----------
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV---PRISMSSIVRQDLSPRSSLHKQIANAVNRGEV--VSED----------- 140 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~---~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~--ip~~----------- 140 (277)
+++.|+|.|+|||||||+++.|++.++. .++-+ ..+.+++.++.+++.+..+.. ....
T Consensus 2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~ 75 (195)
T TIGR00041 2 RGMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFT------REPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRH 75 (195)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE------eCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999853 22211 122345566666666443221 1111
Q ss_pred -HHHHHHHHHHHcCCccCccEEEEcCc----------cCCHH--HHHHHHh-hcC--cCEEEEecCCHHHHHHhhcchHH
Q 023790 141 -IIFGLLSKRLEDGYYRGEIGFILDGL----------PRSRI--QAEILDQ-LAE--IDLVVNFKCADNFIVTNRGGSLK 204 (277)
Q Consensus 141 -~~~~ll~~~l~~~~~~~~~g~IldGf----------Prt~~--qae~l~~-~~~--~d~vI~L~~~~e~l~~Rl~~~~~ 204 (277)
.....+...+. .+..+|+|.+ ++... +...+.. ... ||++|+|++|++++.+|+..+-.
T Consensus 76 ~~~~~~i~~~l~-----~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~~ 150 (195)
T TIGR00041 76 EHLEDKIKPALA-----EGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRGE 150 (195)
T ss_pred HHHHHHHHHHHh-----CCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 11122222222 2345677743 22211 2223322 233 99999999999999999843211
Q ss_pred ------HHHHHHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHH
Q 023790 205 ------EKLEAYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGL 243 (277)
Q Consensus 205 ------~rl~~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I 243 (277)
...+.++...+...+.+++...++.||+++++++|.++|
T Consensus 151 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~id~~~~~e~v~~~i 195 (195)
T TIGR00041 151 LDREEFEKLDFFEKVRQRYLELADKEKSIHVIDATNSVEEVEQDI 195 (195)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeCCCCHHHHHhhC
Confidence 112222222233344444344688899999999998875
No 43
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.51 E-value=9.1e-13 Score=113.26 Aligned_cols=169 Identities=14% Similarity=0.159 Sum_probs=96.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhc--cccchHHHHHHHHHHH-----
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR--GEVVSEDIIFGLLSKR----- 149 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~--G~~ip~~~~~~ll~~~----- 149 (277)
+++.|+|.|++||||||+++.|+++++.....+ .+..+ +.+...++.+++.+.. ....+.......+.++
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~--~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 78 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDV--VFTRE-PGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQHLE 78 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCce--eEeeC-CCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999873221100 11111 2245567777777653 2222222111111111
Q ss_pred --HHcCCccCccEEEEcCccCCH------------HHHHHHHhh----cCcCEEEEecCCHHHHHHhhcch-----HHHH
Q 023790 150 --LEDGYYRGEIGFILDGLPRSR------------IQAEILDQL----AEIDLVVNFKCADNFIVTNRGGS-----LKEK 206 (277)
Q Consensus 150 --l~~~~~~~~~g~IldGfPrt~------------~qae~l~~~----~~~d~vI~L~~~~e~l~~Rl~~~-----~~~r 206 (277)
+... ...+..+|+|.++.+. .+...+... ..||++|+|++|++++.+|+..+ ++.+
T Consensus 79 ~~i~~~-l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~~~~~~~ 157 (205)
T PRK00698 79 EVIKPA-LARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGELDRIEQE 157 (205)
T ss_pred HHHHHH-HHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhh
Confidence 1110 1235678888554321 112223222 46899999999999999998433 2121
Q ss_pred HHHHHHhchhH-HHHHHh-cCcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 207 LEAYAELGKPL-EDYYQK-QKKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 207 l~~y~~~~~~l-~~~y~~-~~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
...|.+..... .....+ ...++.||+++++++++++|.+++..
T Consensus 158 ~~~~~~~~~~~y~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~i~~ 202 (205)
T PRK00698 158 GLDFFERVREGYLELAEKEPERIVVIDASQSLEEVHEDILAVIKA 202 (205)
T ss_pred hHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 12333322211 111111 23578899999999999999998864
No 44
>PRK00625 shikimate kinase; Provisional
Probab=99.50 E-value=5.1e-13 Score=113.23 Aligned_cols=158 Identities=15% Similarity=0.110 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHh-ccccchHHHHHHHHHHHHHcCCccC
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYYRG 157 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~~~ 157 (277)
|+|+|+|+|||||||+|+.||+++|++++++|+++++..... ....+.+.+. .|+....+...+.+.. +. .
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~--~~~~i~eif~~~Ge~~fr~~E~~~l~~-l~-----~ 72 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGA--LYSSPKEIYQAYGEEGFCREEFLALTS-LP-----V 72 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCC--CCCCHHHHHHHHCHHHHHHHHHHHHHH-hc-----c
Confidence 479999999999999999999999999999999998764321 1112333333 3443333333344432 22 1
Q ss_pred ccEEEEcC--ccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcchHH-H---HHHHHHHhchhHHHHHHh-cCcEEEE
Q 023790 158 EIGFILDG--LPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLK-E---KLEAYAELGKPLEDYYQK-QKKLLEF 230 (277)
Q Consensus 158 ~~g~IldG--fPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~~~-~---rl~~y~~~~~~l~~~y~~-~~~li~I 230 (277)
...+|-.| .+... +.+..+.....||+|++|.+++.+|+..+-. . ..+.+.+......+.|++ .+..+.+
T Consensus 73 ~~~VIs~GGg~~~~~---e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~ll~~R~~~Y~~~ad~~i~~ 149 (173)
T PRK00625 73 IPSIVALGGGTLMIE---PSYAHIRNRGLLVLLSLPIATIYQRLQKRGLPERLKHAPSLEEILSQRIDRMRSIADYIFSL 149 (173)
T ss_pred CCeEEECCCCccCCH---HHHHHHhcCCEEEEEECCHHHHHHHHhcCCCCcccCcHHHHHHHHHHHHHHHHHHCCEEEeC
Confidence 23344343 22222 2232233346899999999999999843210 0 122333334445556655 3444443
Q ss_pred e----C-CCCHHHHHHHHHHHH
Q 023790 231 Q----V-GSAPLETWQGLLTAL 247 (277)
Q Consensus 231 d----a-~~s~eev~~~I~~~L 247 (277)
+ + +.++..+.+.+...|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~ 171 (173)
T PRK00625 150 DHVAETSSESLMRACQSFCTLL 171 (173)
T ss_pred CCcccCCCCCHHHHHHHHHHHh
Confidence 3 2 466777777777654
No 45
>PRK08118 topology modulation protein; Reviewed
Probab=99.50 E-value=3.1e-13 Score=113.83 Aligned_cols=95 Identities=17% Similarity=0.178 Sum_probs=70.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCccC
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRG 157 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~ 157 (277)
+++|+|+|+|||||||+|+.|++++|++++++|++++.. . ...++++...+++...+.
T Consensus 1 m~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~--~--------------w~~~~~~~~~~~~~~~~~------ 58 (167)
T PRK08118 1 MKKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP--N--------------WEGVPKEEQITVQNELVK------ 58 (167)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc--C--------------CcCCCHHHHHHHHHHHhc------
Confidence 357999999999999999999999999999999988642 0 112344444455544333
Q ss_pred ccEEEEcCccC-CHHHHHHHHhhcCcCEEEEecCCHHHHHHhh
Q 023790 158 EIGFILDGLPR-SRIQAEILDQLAEIDLVVNFKCADNFIVTNR 199 (277)
Q Consensus 158 ~~g~IldGfPr-t~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl 199 (277)
..+||+||.+. +.. ..+. .+|.+|+|++|.+++..|+
T Consensus 59 ~~~wVidG~~~~~~~--~~l~---~~d~vi~Ld~p~~~~~~R~ 96 (167)
T PRK08118 59 EDEWIIDGNYGGTMD--IRLN---AADTIIFLDIPRTICLYRA 96 (167)
T ss_pred CCCEEEeCCcchHHH--HHHH---hCCEEEEEeCCHHHHHHHH
Confidence 25799999544 332 2222 4899999999999999997
No 46
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.48 E-value=5e-13 Score=115.16 Aligned_cols=160 Identities=14% Similarity=0.148 Sum_probs=102.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhcccc-----ch--------------
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEV-----VS-------------- 138 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~-----ip-------------- 138 (277)
+.+|.|+|++||||||+++.|++ +|+++|++|.+.++.+.++++..+.+.+.+..+.. +.
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~ 80 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEA 80 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHH
Confidence 46799999999999999999999 99999999999999988888877777777643222 22
Q ss_pred ----HHHHHHHHHHHHHcCC--ccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcc-------hHHH
Q 023790 139 ----EDIIFGLLSKRLEDGY--YRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG-------SLKE 205 (277)
Q Consensus 139 ----~~~~~~ll~~~l~~~~--~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~-------~~~~ 205 (277)
++++...|.+.+.... .....-+|+| .|.-.+ ..+. ..+|.+|+++||+++..+|+.. .+..
T Consensus 81 ~~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e-~pll~e--~~~~--~~~D~vi~V~a~~e~~~~Rl~~R~~~s~e~~~~ 155 (194)
T PRK00081 81 RKKLEAILHPLIREEILEQLQEAESSPYVVLD-IPLLFE--NGLE--KLVDRVLVVDAPPETQLERLMARDGLSEEEAEA 155 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCEEEEE-ehHhhc--CCch--hhCCeEEEEECCHHHHHHHHHHcCCCCHHHHHH
Confidence 1233333434333210 0112345555 343221 1111 2479999999999999999843 2334
Q ss_pred HHHHHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 206 KLEAYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 206 rl~~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
|+.. +. +..+.-...+ +.|+.+++++++.+++.++++.
T Consensus 156 ri~~---Q~-~~~~~~~~ad--~vI~N~g~~e~l~~qv~~i~~~ 193 (194)
T PRK00081 156 IIAS---QM-PREEKLARAD--DVIDNNGDLEELRKQVERLLQE 193 (194)
T ss_pred HHHH---hC-CHHHHHHhCC--EEEECCCCHHHHHHHHHHHHHh
Confidence 4432 22 2222111122 4567788999999999988753
No 47
>PLN02199 shikimate kinase
Probab=99.48 E-value=2.6e-12 Score=116.67 Aligned_cols=160 Identities=12% Similarity=0.107 Sum_probs=104.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHh-ccccchHHHHHHHHHHHHHcCCc
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYY 155 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~ 155 (277)
.+..|+|+|++||||||+++.||+.+|+++|++|.++++... +.. +.+++. .|+....+...+.+.+.....
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-G~s----I~eIf~~~GE~~FR~~E~e~L~~L~~~~-- 173 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-GTS----VAEIFVHHGENFFRGKETDALKKLSSRY-- 173 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-CCC----HHHHHHHhCHHHHHHHHHHHHHHHHhcC--
Confidence 567899999999999999999999999999999999988632 223 344443 466666666666666543321
Q ss_pred cCccEEEEcC--ccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcc--h-----HH--------HHHHHHHHhchhHH
Q 023790 156 RGEIGFILDG--LPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG--S-----LK--------EKLEAYAELGKPLE 218 (277)
Q Consensus 156 ~~~~g~IldG--fPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~--~-----~~--------~rl~~y~~~~~~l~ 218 (277)
..+|-.| .+........+. -..+|||++|.+++.+|+.. . +. +-.+...+..+...
T Consensus 174 ---~~VIStGGG~V~~~~n~~~L~----~G~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~~~~L~~L~~~R~ 246 (303)
T PLN02199 174 ---QVVVSTGGGAVIRPINWKYMH----KGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERG 246 (303)
T ss_pred ---CEEEECCCcccCCHHHHHHHh----CCeEEEEECCHHHHHHHHhhcCCCCCCcCCCCCcchhhhHHHHHHHHHHHHH
Confidence 2222222 222222223332 36899999999999999852 1 11 01233344445566
Q ss_pred HHHHhcCcEEEE-----------eCCCCHHHHHHHHHHHHHHc
Q 023790 219 DYYQKQKKLLEF-----------QVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 219 ~~y~~~~~li~I-----------da~~s~eev~~~I~~~L~~~ 250 (277)
++|.+.+..+.+ ..+.++++++.+|.+.+...
T Consensus 247 plY~~Ad~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~ 289 (303)
T PLN02199 247 EAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSF 289 (303)
T ss_pred HHHHhCCEEEecccccccccccccCCCCHHHHHHHHHHHHHHH
Confidence 678775544441 13688999999999888653
No 48
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.48 E-value=3e-12 Score=108.81 Aligned_cols=163 Identities=12% Similarity=0.067 Sum_probs=94.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh---CCCccchhHHHHHhcCCCChhHHHHHHHHhccc---cchHHHH-------HHH
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGE---VVSEDII-------FGL 145 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~---g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~---~ip~~~~-------~~l 145 (277)
+.|+|+|++||||||+++.|++++ |..++.... +.++..++.+++++..+. ..+.... ...
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 74 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE------PGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQH 74 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHH
Confidence 579999999999999999999998 554443311 123345566666655432 1111110 111
Q ss_pred HHHHHHcCCccCccEEEEcCccCCH------------HHHHHHHh----hcCcCEEEEecCCHHHHHHhhcchHH-----
Q 023790 146 LSKRLEDGYYRGEIGFILDGLPRSR------------IQAEILDQ----LAEIDLVVNFKCADNFIVTNRGGSLK----- 204 (277)
Q Consensus 146 l~~~l~~~~~~~~~g~IldGfPrt~------------~qae~l~~----~~~~d~vI~L~~~~e~l~~Rl~~~~~----- 204 (277)
+.+.+... ...+..+|+|.++.+. .+...+.. ...|+.+|+|+++++++.+|+..+-.
T Consensus 75 ~~~~~~~~-~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~ 153 (200)
T cd01672 75 VEEVIKPA-LARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDRDE 153 (200)
T ss_pred HHHHHHHH-HhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchhh
Confidence 11111110 1235678888655321 12222222 13689999999999999999954321
Q ss_pred HHHHHHHHhchhHHHH-HHhc-CcEEEEeCCCCHHHHHHHHHHHHH
Q 023790 205 EKLEAYAELGKPLEDY-YQKQ-KKLLEFQVGSAPLETWQGLLTALH 248 (277)
Q Consensus 205 ~rl~~y~~~~~~l~~~-y~~~-~~li~Ida~~s~eev~~~I~~~L~ 248 (277)
.....|.+........ .... ..++.||++.+++++.++|.+.+.
T Consensus 154 ~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~e~i~~~i~~~i~ 199 (200)
T cd01672 154 QEGLEFHERVREGYLELAAQEPERIIVIDASQPLEEVLAEILKAIL 199 (200)
T ss_pred hhhHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHh
Confidence 1222343333222211 1111 357889999999999999998875
No 49
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.48 E-value=1.1e-12 Score=113.28 Aligned_cols=159 Identities=15% Similarity=0.198 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhc------cccch--------------
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR------GEVVS-------------- 138 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~------G~~ip-------------- 138 (277)
++|.|+|++||||||+|+.|++.+|++++|+|++.++.+..+++.++.+.+.+.. |..+.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 4799999999999999999999999999999999999988888888888877643 30111
Q ss_pred ----HHHHHHHHHHHHHcCC--ccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcc-------hHHH
Q 023790 139 ----EDIIFGLLSKRLEDGY--YRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG-------SLKE 205 (277)
Q Consensus 139 ----~~~~~~ll~~~l~~~~--~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~-------~~~~ 205 (277)
++++..++...+.... .....-+|+| .|--.+. .+. ..+|.+|+++||.++..+|+.. .+.+
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e-~pll~E~--~~~--~~~D~ii~V~a~~e~r~~Rl~~R~g~s~e~~~~ 156 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEELAQLKSNPIVVLV-IPLLFEA--KLT--DLCSEIWVVDCSPEQQLQRLIKRDGLTEEEAEA 156 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEE-eHHhcCc--chH--hCCCEEEEEECCHHHHHHHHHHcCCCCHHHHHH
Confidence 1223333333333210 1112334444 3322110 111 2579999999999999999833 2334
Q ss_pred HHHHHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHH
Q 023790 206 KLEAYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALH 248 (277)
Q Consensus 206 rl~~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~ 248 (277)
|++ .+. +....-...+ +.|+.+.+++++.+++.+++.
T Consensus 157 ri~---~Q~-~~~~k~~~aD--~vI~N~g~~e~l~~qv~~~l~ 193 (195)
T PRK14730 157 RIN---AQW-PLEEKVKLAD--VVLDNSGDLEKLYQQVDQLLK 193 (195)
T ss_pred HHH---hCC-CHHHHHhhCC--EEEECCCCHHHHHHHHHHHHh
Confidence 443 222 2222111122 355668899999999998764
No 50
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.47 E-value=2.3e-12 Score=107.72 Aligned_cols=149 Identities=18% Similarity=0.217 Sum_probs=94.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCccCc
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (277)
|+|+|.|.||+||||+|++|+ ++|+.+++..+++++.- +.....+ ......+..+.+...+...+ ..
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~-----~~~~~de-~r~s~~vD~d~~~~~le~~~------~~ 67 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENG-----LYTEYDE-LRKSVIVDVDKLRKRLEELL------RE 67 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcC-----CeeccCC-ccceEEeeHHHHHHHHHHHh------cc
Confidence 679999999999999999999 99999999999987641 0000000 00011223333333333222 13
Q ss_pred cEEEEcCccCCHHHHHHHHhhcC-cCEEEEecCCHHHHHHhhcchH---HHHHHHHHHhchhH--HHHHHhcCcEEEEeC
Q 023790 159 IGFILDGLPRSRIQAEILDQLAE-IDLVVNFKCADNFIVTNRGGSL---KEKLEAYAELGKPL--EDYYQKQKKLLEFQV 232 (277)
Q Consensus 159 ~g~IldGfPrt~~qae~l~~~~~-~d~vI~L~~~~e~l~~Rl~~~~---~~rl~~y~~~~~~l--~~~y~~~~~li~Ida 232 (277)
.+.|+|+. +.++.+ +|+||.|.|+++++.+|++++- .+-.++.+.+...+ .+..+..+.++.||.
T Consensus 68 ~~~Ivd~H---------~~hl~~~~dlVvVLR~~p~~L~~RLk~RGy~~eKI~ENveAEi~~vi~~EA~E~~~~v~evdt 138 (180)
T COG1936 68 GSGIVDSH---------LSHLLPDCDLVVVLRADPEVLYERLKGRGYSEEKILENVEAEILDVILIEAVERFEAVIEVDT 138 (180)
T ss_pred CCeEeech---------hhhcCCCCCEEEEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCceEEEEC
Confidence 56788875 223334 8999999999999999995431 12222222222211 122222356788885
Q ss_pred -CCCHHHHHHHHHHHHHH
Q 023790 233 -GSAPLETWQGLLTALHL 249 (277)
Q Consensus 233 -~~s~eev~~~I~~~L~~ 249 (277)
+.+++++++.|.+++..
T Consensus 139 t~~s~ee~~~~i~~ii~~ 156 (180)
T COG1936 139 TNRSPEEVAEEIIDIIGG 156 (180)
T ss_pred CCCCHHHHHHHHHHHHcc
Confidence 79999999999999984
No 51
>PRK04182 cytidylate kinase; Provisional
Probab=99.45 E-value=2.3e-12 Score=108.24 Aligned_cols=157 Identities=18% Similarity=0.158 Sum_probs=90.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCC-CChhHHHHHHHHhccccch--HHHHHHHHHHHHHcCCc
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP-RSSLHKQIANAVNRGEVVS--EDIIFGLLSKRLEDGYY 155 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~-~~~lg~~i~~~l~~G~~ip--~~~~~~ll~~~l~~~~~ 155 (277)
|+|+|.|+|||||||+|+.|++++|+++++++++++..... +.+.. .+ ...++..+ ...+...+.. +..
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~-~~---~~~~~~~~~~~~~~~~~~~~-~~~--- 72 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLE-EF---NKYAEEDPEIDKEIDRRQLE-IAE--- 72 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHH-HH---HHHhhcCchHHHHHHHHHHH-HHh---
Confidence 57999999999999999999999999999999988875432 11211 11 11222222 1112222211 220
Q ss_pred cCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcch-------HHHHHHHHH-HhchhHHHHHHh----
Q 023790 156 RGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS-------LKEKLEAYA-ELGKPLEDYYQK---- 223 (277)
Q Consensus 156 ~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~-------~~~rl~~y~-~~~~~l~~~y~~---- 223 (277)
.+.++|++|.-.. .+.. ..++++|+|++|.+++.+|+..+ ..+.+..-. ....-...+|..
T Consensus 73 -~~~~~Vi~g~~~~-----~~~~-~~~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~ 145 (180)
T PRK04182 73 -KEDNVVLEGRLAG-----WMAK-DYADLKIWLKAPLEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDIDD 145 (180)
T ss_pred -cCCCEEEEEeecc-----eEec-CCCCEEEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 2457888873111 1111 12689999999999999998321 111111100 000111222210
Q ss_pred -cCcEEEEeC-CCCHHHHHHHHHHHHHHc
Q 023790 224 -QKKLLEFQV-GSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 224 -~~~li~Ida-~~s~eev~~~I~~~L~~~ 250 (277)
...-++||+ ..+++++++.|.+.+...
T Consensus 146 ~~~~d~~idt~~~~~~~~~~~I~~~~~~~ 174 (180)
T PRK04182 146 LSIYDLVINTSRWDPEGVFDIILTAIDKL 174 (180)
T ss_pred cccccEEEECCCCCHHHHHHHHHHHHHHH
Confidence 111255665 579999999999998764
No 52
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.44 E-value=3.5e-12 Score=106.44 Aligned_cols=156 Identities=20% Similarity=0.216 Sum_probs=92.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCcc
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (277)
.++.|+|+|+|||||||+|+.||+++|+++++.++++++.... +...... ..|.....+...+++......
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g~--~~~~~~~---~~g~~~~~~~~~~~~~~l~~~---- 73 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGK--SIPEIFE---EEGEAAFRELEEEVLAELLAR---- 73 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCC--CHHHHHH---HHCHHHHHHHHHHHHHHHHhc----
Confidence 5678999999999999999999999999999999888765432 2222111 123322223333444443332
Q ss_pred CccEEEEcCc--cCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcch----------HHHHHHHHHHhchhHHHHHHhc
Q 023790 157 GEIGFILDGL--PRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS----------LKEKLEAYAELGKPLEDYYQKQ 224 (277)
Q Consensus 157 ~~~g~IldGf--Prt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~----------~~~rl~~y~~~~~~l~~~y~~~ 224 (277)
...+|..|. .........|. ....+|+|++|.+.+.+|+..+ ..+.+..+.... ...|...
T Consensus 74 -~~~vi~~g~~~~~~~~~r~~l~---~~~~~v~l~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~~~~---~~~~~~~ 146 (175)
T PRK00131 74 -HNLVISTGGGAVLREENRALLR---ERGTVVYLDASFEELLRRLRRDRNRPLLQTNDPKEKLRDLYEER---DPLYEEV 146 (175)
T ss_pred -CCCEEEeCCCEeecHHHHHHHH---hCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHH---HHHHHhh
Confidence 123444331 11122223332 3468999999999999998431 112222222222 2223331
Q ss_pred CcEEEEe-CCCCHHHHHHHHHHHHHH
Q 023790 225 KKLLEFQ-VGSAPLETWQGLLTALHL 249 (277)
Q Consensus 225 ~~li~Id-a~~s~eev~~~I~~~L~~ 249 (277)
.. +.|| .+.+++++.+.|.+.+..
T Consensus 147 ~d-l~idt~~~~~~e~~~~I~~~v~~ 171 (175)
T PRK00131 147 AD-ITVETDGRSPEEVVNEILEKLEA 171 (175)
T ss_pred cC-eEEeCCCCCHHHHHHHHHHHHHh
Confidence 11 3455 368999999999998863
No 53
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.44 E-value=3.5e-12 Score=107.85 Aligned_cols=153 Identities=16% Similarity=0.178 Sum_probs=93.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHh-ccccchHHHHHHHHHHHHHcCCc
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYY 155 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~ 155 (277)
++..|+|+|++||||||+++.|++.+|+++++.|..+.+... .++. ..+. .|+....+...+++.. +..
T Consensus 3 ~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g--~~i~----~~~~~~g~~~fr~~e~~~l~~-l~~--- 72 (172)
T PRK05057 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG--ADIG----WVFDVEGEEGFRDREEKVINE-LTE--- 72 (172)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhC--cCHh----HHHHHhCHHHHHHHHHHHHHH-HHh---
Confidence 355799999999999999999999999999999887765432 1222 2221 2332222333444443 322
Q ss_pred cCccEEEEc-C--ccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcc----------hHHHHHHHHHHhchhHHHHHH
Q 023790 156 RGEIGFILD-G--LPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG----------SLKEKLEAYAELGKPLEDYYQ 222 (277)
Q Consensus 156 ~~~~g~Ild-G--fPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~----------~~~~rl~~y~~~~~~l~~~y~ 222 (277)
..++|+. | .+.+....+.|. ..+.+|||++|.+++.+|+.. ...+.++.+.+. ...+|+
T Consensus 73 --~~~~vi~~ggg~v~~~~~~~~l~---~~~~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~---R~~~Y~ 144 (172)
T PRK05057 73 --KQGIVLATGGGSVKSRETRNRLS---ARGVVVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEALANE---RNPLYE 144 (172)
T ss_pred --CCCEEEEcCCchhCCHHHHHHHH---hCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHH---HHHHHH
Confidence 1234443 2 222222223443 357899999999999999832 112334333333 345565
Q ss_pred h-cCcEEEEeC-CCCHHHHHHHHHHHHHH
Q 023790 223 K-QKKLLEFQV-GSAPLETWQGLLTALHL 249 (277)
Q Consensus 223 ~-~~~li~Ida-~~s~eev~~~I~~~L~~ 249 (277)
+ .+ +.||+ +.+++++.++|.+.+.+
T Consensus 145 ~~Ad--~~idt~~~s~~ei~~~i~~~l~~ 171 (172)
T PRK05057 145 EIAD--VTIRTDDQSAKVVANQIIHMLES 171 (172)
T ss_pred hhCC--EEEECCCCCHHHHHHHHHHHHhh
Confidence 5 33 34564 58999999999988753
No 54
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.44 E-value=3.8e-12 Score=125.51 Aligned_cols=162 Identities=15% Similarity=0.193 Sum_probs=109.5
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHH-hccccchHHHHHHHHHHHHHcC
Q 023790 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV-NRGEVVSEDIIFGLLSKRLEDG 153 (277)
Q Consensus 75 ~~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l-~~G~~ip~~~~~~ll~~~l~~~ 153 (277)
|.|..+|+++|+|||||||+++.||+++|++++|+|+.+.+.. |..+.+++ ..|+....+...+.+.+.+...
T Consensus 3 ~~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~------g~si~eif~~~Ge~~FR~~E~~~l~~~~~~~ 76 (542)
T PRK14021 3 PTRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREI------GMSIPSYFEEYGEPAFREVEADVVADMLEDF 76 (542)
T ss_pred CCCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHH------CcCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5688999999999999999999999999999999999988764 44566666 3677777777777776644321
Q ss_pred CccCccEEEEc--CccCCHHHHHHHHhh-cCcCEEEEecCCHHHHHHhhcch-----H----HHHHHHHHHhchhHHHHH
Q 023790 154 YYRGEIGFILD--GLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNRGGS-----L----KEKLEAYAELGKPLEDYY 221 (277)
Q Consensus 154 ~~~~~~g~Ild--GfPrt~~qae~l~~~-~~~d~vI~L~~~~e~l~~Rl~~~-----~----~~rl~~y~~~~~~l~~~y 221 (277)
..+|-- |.+......+.|.++ ..-..||||+++.+++.+|+... + .+++.. .......+|
T Consensus 77 -----~~VIs~GGG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~~~RPll~~~~~~~~~~---l~~~R~~~Y 148 (542)
T PRK14021 77 -----DGIFSLGGGAPMTPSTQHALASYIAHGGRVVYLDADPKEAMERANRGGGRPMLNGDANKRWKK---LFKQRDPVF 148 (542)
T ss_pred -----CeEEECCCchhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhCCCCCCCCCCCcHHHHHH---HHHHHHHHH
Confidence 223322 233333333444322 23458999999999999998321 1 233333 333345556
Q ss_pred HhcCcEEEEeC-CCCHHHHHHHHHHHHHHcc
Q 023790 222 QKQKKLLEFQV-GSAPLETWQGLLTALHLQH 251 (277)
Q Consensus 222 ~~~~~li~Ida-~~s~eev~~~I~~~L~~~~ 251 (277)
++... +.||+ +.+++++.++|.+.+....
T Consensus 149 ~~~Ad-~~i~~~~~~~~~~~~~i~~~~~~~~ 178 (542)
T PRK14021 149 RQVAN-VHVHTRGLTPQAAAKKLIDMVAERT 178 (542)
T ss_pred HhhCC-EEEECCCCCHHHHHHHHHHHHHhcc
Confidence 55222 33443 6799999999999987643
No 55
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=99.41 E-value=4.4e-12 Score=103.58 Aligned_cols=153 Identities=19% Similarity=0.254 Sum_probs=101.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCc
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~ 155 (277)
+..++|+|.|.||+||||+|++||+.+|+.+|.+++++++.--- ..+...- +...+.++.+...|...+.+
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~-~gyDE~y-----~c~i~DEdkv~D~Le~~m~~--- 75 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLY-EGYDEEY-----KCHILDEDKVLDELEPLMIE--- 75 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcch-hcccccc-----cCccccHHHHHHHHHHHHhc---
Confidence 56788999999999999999999999999999999999874210 0000000 12245677777777777664
Q ss_pred cCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcch------HHHHH--HHHHHhchhHHHHHHhcCcE
Q 023790 156 RGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS------LKEKL--EAYAELGKPLEDYYQKQKKL 227 (277)
Q Consensus 156 ~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~------~~~rl--~~y~~~~~~l~~~y~~~~~l 227 (277)
.|.|+|-.-.. .|. --.+|+||.|.||.+++.+|+..+ ++.-+ +.|.-..+...+.|+. +.+
T Consensus 76 ---Gg~IVDyHgCd-----~Fp-erwfdlVvVLr~~~s~LY~RL~sRgY~e~Ki~eNiecEIfgv~~eea~eSy~~-~iV 145 (176)
T KOG3347|consen 76 ---GGNIVDYHGCD-----FFP-ERWFDLVVVLRTPNSVLYDRLKSRGYSEKKIKENIECEIFGVVLEEARESYSP-KIV 145 (176)
T ss_pred ---CCcEEeecccC-----ccc-hhheeEEEEEecCchHHHHHHHHcCCCHHHHhhhcchHHHHHHHHHHHHHcCC-cce
Confidence 57788721110 011 014689999999999999999432 22221 2344444556677764 367
Q ss_pred EEEeCCCCHHHHHHHHHHHHH
Q 023790 228 LEFQVGSAPLETWQGLLTALH 248 (277)
Q Consensus 228 i~Ida~~s~eev~~~I~~~L~ 248 (277)
+.+. +.+++++...|-.++.
T Consensus 146 ~eL~-s~~~Eem~~ni~ri~~ 165 (176)
T KOG3347|consen 146 VELQ-SETKEEMESNISRILN 165 (176)
T ss_pred eecC-cCCHHHHHHHHHHHHH
Confidence 7776 4455877777666554
No 56
>PRK07933 thymidylate kinase; Validated
Probab=99.41 E-value=3.6e-12 Score=111.47 Aligned_cols=160 Identities=19% Similarity=0.117 Sum_probs=91.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCC---CccchhHHHHHhcCCCChhHHHHHHHHhcc--cc--chHHHHH--------
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEV---PRISMSSIVRQDLSPRSSLHKQIANAVNRG--EV--VSEDIIF-------- 143 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~---~~Is~~dllr~~~~~~~~lg~~i~~~l~~G--~~--ip~~~~~-------- 143 (277)
|.|+|.|+.||||||+++.|++++.- .++-+ +.....+++.++.+++.+... .. -+.....
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~----~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~ 76 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATL----AFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAG 76 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE----ecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhh
Confidence 57999999999999999999999842 22211 110012344555566555421 11 1111111
Q ss_pred --HHHHHHHHcCCccCccEEEEcCccCCHH--HH---------------HHHHh----hcCcCEEEEecCCHHHHHHhhc
Q 023790 144 --GLLSKRLEDGYYRGEIGFILDGLPRSRI--QA---------------EILDQ----LAEIDLVVNFKCADNFIVTNRG 200 (277)
Q Consensus 144 --~ll~~~l~~~~~~~~~g~IldGfPrt~~--qa---------------e~l~~----~~~~d~vI~L~~~~e~l~~Rl~ 200 (277)
..|...+. .+..+|.|.|..+.. |. ..++. ...||++|+|++|++++.+|+.
T Consensus 77 ~~~~I~p~l~-----~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~ 151 (213)
T PRK07933 77 ARDELAGLLA-----AHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERAR 151 (213)
T ss_pred hHHHHHHHHh-----CCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHH
Confidence 11222222 245677787654421 21 11221 1269999999999999999984
Q ss_pred chH-------HHHHH---HHHHhchhH-HHHHHh--cCcEEEEeCCCCHHHHHHHHHHHH
Q 023790 201 GSL-------KEKLE---AYAELGKPL-EDYYQK--QKKLLEFQVGSAPLETWQGLLTAL 247 (277)
Q Consensus 201 ~~~-------~~rl~---~y~~~~~~l-~~~y~~--~~~li~Ida~~s~eev~~~I~~~L 247 (277)
.+- ..+++ .|.+..... .+...+ ...++.||+++++++|.++|.+.|
T Consensus 152 ~R~~~~~~~~~d~~E~~~~f~~~v~~~Y~~~~~~~~~~~~~~ida~~~~e~v~~~i~~~~ 211 (213)
T PRK07933 152 RRAAQDADRARDAYERDDGLQQRTGAVYAELAAQGWGGPWLVVDPDVDPAALAARLAAAL 211 (213)
T ss_pred hhccccCCcccccccccHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCCHHHHHHHHHHHh
Confidence 321 01222 343333322 222222 237888999999999999999876
No 57
>PRK06762 hypothetical protein; Provisional
Probab=99.41 E-value=8.8e-12 Score=104.10 Aligned_cols=153 Identities=18% Similarity=0.148 Sum_probs=89.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh--CCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCC
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL--EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY 154 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~--g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~ 154 (277)
+++.|+|.|+|||||||+|+.|++++ ++.+++.|. ++..+..... ..+. ...+.+..++...+.
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~-~r~~l~~~~~---------~~~~-~~~~~~~~~~~~~~~--- 66 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDV-VRRDMLRVKD---------GPGN-LSIDLIEQLVRYGLG--- 66 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHH-HHHHhccccC---------CCCC-cCHHHHHHHHHHHHh---
Confidence 46789999999999999999999998 566677654 4443221100 0011 111222333333222
Q ss_pred ccCccEEEEcCccCCHHHHHHHHhh----cCcCEEEEecCCHHHHHHhhcchHHHHHHHHHHhchhHHHHHHhcC-----
Q 023790 155 YRGEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNRGGSLKEKLEAYAELGKPLEDYYQKQK----- 225 (277)
Q Consensus 155 ~~~~~g~IldGfPrt~~qae~l~~~----~~~d~vI~L~~~~e~l~~Rl~~~~~~rl~~y~~~~~~l~~~y~~~~----- 225 (277)
.+..+|+|+.-......+.+..+ ..+..+|+|++|.+++.+|...+-.. +....+.+..+|...+
T Consensus 67 --~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~----~~~~~~~l~~~~~~~~~~~~~ 140 (166)
T PRK06762 67 --HCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKS----HEFGEDDMRRWWNPHDTLGVI 140 (166)
T ss_pred --CCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhccccc----ccCCHHHHHHHHhhcCCcCCC
Confidence 24678899874433333333322 23568999999999999998443211 0011122333332211
Q ss_pred cEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 226 KLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 226 ~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
-.+.++.+.++++|+++|...+..
T Consensus 141 ~~~~~~~~~~~~~v~~~i~~~~~~ 164 (166)
T PRK06762 141 GETIFTDNLSLKDIFDAILTDIGL 164 (166)
T ss_pred CeEEecCCCCHHHHHHHHHHHhcc
Confidence 234445678999999999988754
No 58
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.40 E-value=1.3e-11 Score=102.97 Aligned_cols=155 Identities=17% Similarity=0.138 Sum_probs=88.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCC-ChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCccC
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPR-SSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRG 157 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~-~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~ 157 (277)
++|+|.|++||||||+|+.|++++|+++++.+++++...... .+.. .+....... + .+...+...+.... ..
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~---~--~~~~~~~~~i~~~~-~~ 73 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLI-EFLNYAEEN---P--EIDKKIDRRIHEIA-LK 73 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHH-HHHHHHhcC---c--HHHHHHHHHHHHHH-hc
Confidence 579999999999999999999999999999999887654321 1111 111111111 1 11222222222210 12
Q ss_pred ccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcch-------HHHHHHHHHHhchh-HHHHHHh-----c
Q 023790 158 EIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS-------LKEKLEAYAELGKP-LEDYYQK-----Q 224 (277)
Q Consensus 158 ~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~-------~~~rl~~y~~~~~~-l~~~y~~-----~ 224 (277)
+.++|++|.-... .+ ...++++|++++|.+++.+|+..+ ..+++..-...... ...+|.. .
T Consensus 74 ~~~~Vi~g~~~~~----~~--~~~~d~~v~v~a~~~~r~~R~~~R~~~s~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~ 147 (171)
T TIGR02173 74 EKNVVLESRLAGW----IV--REYADVKIWLKAPLEVRARRIAKREGKSLTVARSETIEREESEKRRYLKFYGIDIDDLS 147 (171)
T ss_pred CCCEEEEecccce----ee--cCCcCEEEEEECCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence 4578899852211 01 124679999999999999998321 22222211111111 1222321 1
Q ss_pred CcEEEEeC-CCCHHHHHHHHHHHH
Q 023790 225 KKLLEFQV-GSAPLETWQGLLTAL 247 (277)
Q Consensus 225 ~~li~Ida-~~s~eev~~~I~~~L 247 (277)
..-+.||+ ..++++ .+.|.+++
T Consensus 148 ~ydl~i~t~~~~~~~-~~~i~~~~ 170 (171)
T TIGR02173 148 IYDLVINTSNWDPNN-VDIILDAL 170 (171)
T ss_pred cccEEEECCCCCHHH-HHHHHHHh
Confidence 11256776 488999 98888765
No 59
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.40 E-value=3.5e-12 Score=117.57 Aligned_cols=162 Identities=15% Similarity=0.130 Sum_probs=99.7
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHh-ccccchHHHHHHHHHHHHHcC
Q 023790 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDG 153 (277)
Q Consensus 75 ~~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~ 153 (277)
+..+..|+|+|+|||||||+++.|++++|+++++++..+.+.. +.+ +.+.+. .|.....+...+.+...+...
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~--G~~----i~ei~~~~G~~~fr~~e~~~l~~ll~~~ 203 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREA--GLS----VSEIFALYGQEGYRRLERRALERLIAEH 203 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHh--CCC----HHHHHHHHCHHHHHHHHHHHHHHHHhhC
Confidence 4677889999999999999999999999999999988776653 222 222222 343333444455555544432
Q ss_pred CccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcchH--------HHHHHHHHHhchhHHHHHHhcC
Q 023790 154 YYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSL--------KEKLEAYAELGKPLEDYYQKQK 225 (277)
Q Consensus 154 ~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~~--------~~rl~~y~~~~~~l~~~y~~~~ 225 (277)
...+|-.|.. .......+.......++|||++|.+++.+|+..+- ....+.+++.......+|+..+
T Consensus 204 ----~~~VI~~Ggg-~v~~~~~~~~l~~~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~~~y~~ad 278 (309)
T PRK08154 204 ----EEMVLATGGG-IVSEPATFDLLLSHCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASREPLYARAD 278 (309)
T ss_pred ----CCEEEECCCc-hhCCHHHHHHHHhCCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCC
Confidence 2233333321 11111122222234679999999999999984321 1122344444444556665433
Q ss_pred cEEEEeCC-CCHHHHHHHHHHHHHH
Q 023790 226 KLLEFQVG-SAPLETWQGLLTALHL 249 (277)
Q Consensus 226 ~li~Ida~-~s~eev~~~I~~~L~~ 249 (277)
++||++ .+++++.++|...+..
T Consensus 279 --~~I~t~~~s~ee~~~~I~~~l~~ 301 (309)
T PRK08154 279 --AVVDTSGLTVAQSLARLRELVRP 301 (309)
T ss_pred --EEEECCCCCHHHHHHHHHHHHHH
Confidence 345654 6999999999998864
No 60
>PRK13976 thymidylate kinase; Provisional
Probab=99.39 E-value=1.6e-11 Score=107.07 Aligned_cols=166 Identities=10% Similarity=0.023 Sum_probs=96.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhcc-ccchHHHH-----------HHHH
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG-EVVSEDII-----------FGLL 146 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G-~~ip~~~~-----------~~ll 146 (277)
+.|+|+|..||||||+++.|++++.-.. .....+-...+.++++|+.|++.+... ..-|.... .+.+
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~-g~~~v~~~~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~~I 79 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIY-GENNVVLTREPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVKVI 79 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhc-CCcceEEeeCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999874210 000011111345677888888877542 22222111 1222
Q ss_pred HHHHHcCCccCccEEEEcCccCCH------------HHHHHHHhh---cCcCEEEEecCCHHHHHHhhcc-hHHHHHHHH
Q 023790 147 SKRLEDGYYRGEIGFILDGLPRSR------------IQAEILDQL---AEIDLVVNFKCADNFIVTNRGG-SLKEKLEAY 210 (277)
Q Consensus 147 ~~~l~~~~~~~~~g~IldGfPrt~------------~qae~l~~~---~~~d~vI~L~~~~e~l~~Rl~~-~~~~rl~~y 210 (277)
...+. .+..+|.|.|..+. .....++.. ..||++|+|++|++++++|+.. .++..-..|
T Consensus 80 ~p~l~-----~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~~~e~~~~~~ 154 (209)
T PRK13976 80 LPALL-----QGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKNGYEFMDLEF 154 (209)
T ss_pred HHHHH-----CCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhcccchhcccHHH
Confidence 22222 24556777665432 122333322 3699999999999999999842 222212234
Q ss_pred HHhchhH-HHHHHh-cCcEEEEeC---CCC---HHHHHHHHHHHHHHc
Q 023790 211 AELGKPL-EDYYQK-QKKLLEFQV---GSA---PLETWQGLLTALHLQ 250 (277)
Q Consensus 211 ~~~~~~l-~~~y~~-~~~li~Ida---~~s---~eev~~~I~~~L~~~ 250 (277)
.+..... ..+..+ .+.++.||+ +++ +++|.++|.+.+...
T Consensus 155 l~~v~~~Y~~l~~~~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~ 202 (209)
T PRK13976 155 YDKVRKGFREIVIKNPHRCHVITCIDAKDNIEDINSVHLEIVKLLHAV 202 (209)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEECCCCccCcCCHHHHHHHHHHHHHHH
Confidence 4333332 222222 235777887 445 999999999988754
No 61
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.38 E-value=8.2e-12 Score=108.18 Aligned_cols=160 Identities=11% Similarity=0.063 Sum_probs=100.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchH-------------------
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSE------------------- 139 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~------------------- 139 (277)
+.|.|+|++||||||+++.|++ +|+++|+.|++.++.+.++++..+.+.+.+..+...++
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~ 80 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT 80 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence 5799999999999999999997 89999999999999988888888888877755443221
Q ss_pred ----HHHHHHHHHHHHcC---CccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcc-------hHHH
Q 023790 140 ----DIIFGLLSKRLEDG---YYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG-------SLKE 205 (277)
Q Consensus 140 ----~~~~~ll~~~l~~~---~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~-------~~~~ 205 (277)
.++...+...+... ....+..+++-..|.-.+. .+. ..+|.+|+++||.++.++|+.. .+.+
T Consensus 81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e~plL~e~--g~~--~~~D~vi~V~a~~e~ri~Rl~~R~g~s~e~~~~ 156 (200)
T PRK14734 81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYDMPLLVEK--GLD--RKMDLVVVVDVDVEERVRRLVEKRGLDEDDARR 156 (200)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEEeeceeEc--Ccc--ccCCeEEEEECCHHHHHHHHHHcCCCCHHHHHH
Confidence 12222232222211 0011122333223321110 011 2579999999999999999832 2333
Q ss_pred HHHHHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 206 KLEAYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 206 rl~~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
|++ .+... ...... ..+.|+.+.+++++.+++..+++.
T Consensus 157 ri~---~Q~~~-~~k~~~--ad~vI~N~g~~e~l~~~v~~~~~~ 194 (200)
T PRK14734 157 RIA---AQIPD-DVRLKA--ADIVVDNNGTREQLLAQVDGLIAE 194 (200)
T ss_pred HHH---hcCCH-HHHHHh--CCEEEECcCCHHHHHHHHHHHHHH
Confidence 332 22222 111122 234678789999999999988754
No 62
>PRK04040 adenylate kinase; Provisional
Probab=99.36 E-value=2e-11 Score=104.82 Aligned_cols=163 Identities=12% Similarity=0.111 Sum_probs=92.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh--CCCccchhHHHHHhcCCCCh--hHHHHHHHHhccccchHHHHHHHHHHHHHcC
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLL--EVPRISMSSIVRQDLSPRSS--LHKQIANAVNRGEVVSEDIIFGLLSKRLEDG 153 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~--g~~~Is~~dllr~~~~~~~~--lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~ 153 (277)
+++|+|.|+|||||||+++.|++++ ++.+++.|+++++......- ....++.. ..........+..+.+...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l----~~~~~~~~~~~a~~~i~~~ 77 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKL----PPEEQKELQREAAERIAEM 77 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhC----ChhhhHHHHHHHHHHHHHh
Confidence 5789999999999999999999999 89999999998776432211 11111111 0000111122233333332
Q ss_pred CccCccEEEEcCccC--CH------HHHHHHHhhcCcCEEEEecCCHHHHHHhhcc-----h---HHHHHHHHHHhchhH
Q 023790 154 YYRGEIGFILDGLPR--SR------IQAEILDQLAEIDLVVNFKCADNFIVTNRGG-----S---LKEKLEAYAELGKPL 217 (277)
Q Consensus 154 ~~~~~~g~IldGfPr--t~------~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~-----~---~~~rl~~y~~~~~~l 217 (277)
..+..+|+||... +. .....+.. ..|+.+|+|+++++++.+|... + -...++...+.....
T Consensus 78 --~~~~~~~~~~h~~i~~~~g~~~~~~~~~~~~-l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~~a~~~ 154 (188)
T PRK04040 78 --AGEGPVIVDTHATIKTPAGYLPGLPEWVLEE-LNPDVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQEMNRAA 154 (188)
T ss_pred --hcCCCEEEeeeeeeccCCCCcCCCCHHHHhh-cCCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHH
Confidence 1244588887431 00 11223333 4799999999999999888742 1 011122222222222
Q ss_pred HHHHHh-cC-c-EEEEeCCCCHHHHHHHHHHHH
Q 023790 218 EDYYQK-QK-K-LLEFQVGSAPLETWQGLLTAL 247 (277)
Q Consensus 218 ~~~y~~-~~-~-li~Ida~~s~eev~~~I~~~L 247 (277)
..+|.. .+ . .+.+|-+..+++.+++|.+++
T Consensus 155 a~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii 187 (188)
T PRK04040 155 AMAYAVLTGATVKIVENREGLLEEAAEEIVEVL 187 (188)
T ss_pred HHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence 223322 12 2 333443434999999998876
No 63
>PLN02422 dephospho-CoA kinase
Probab=99.35 E-value=2.3e-11 Score=107.53 Aligned_cols=160 Identities=13% Similarity=0.117 Sum_probs=101.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhcccc-----ch---------------
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEV-----VS--------------- 138 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~-----ip--------------- 138 (277)
+.|.|+|++||||||+++.|+ ++|++++|+|++.++.+.++++....+.+.+..+.+ +.
T Consensus 2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~ 80 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKR 80 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 469999999999999999999 589999999999999988877766677766532211 11
Q ss_pred ---HHHHHHHHHHHHHcC----CccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcc-------hHH
Q 023790 139 ---EDIIFGLLSKRLEDG----YYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG-------SLK 204 (277)
Q Consensus 139 ---~~~~~~ll~~~l~~~----~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~-------~~~ 204 (277)
++++...|...+... .......+|+| .|.-.+ ..+. ..+|.+|+++||.++.++|+.. .+.
T Consensus 81 ~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~e-ipLL~E--~~~~--~~~D~vI~V~a~~e~ri~RL~~R~g~s~eea~ 155 (232)
T PLN02422 81 QLLNRLLAPYISSGIFWEILKLWLKGCKVIVLD-IPLLFE--TKMD--KWTKPVVVVWVDPETQLERLMARDGLSEEQAR 155 (232)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEE-ehhhhh--cchh--hhCCEEEEEECCHHHHHHHHHHcCCCCHHHHH
Confidence 133344443333211 00112344555 443221 0111 2479999999999999999843 233
Q ss_pred HHHHHHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 205 EKLEAYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 205 ~rl~~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
+|+ ..+. +.... ....- +.|+.+.+++++.+++.++++..
T Consensus 156 ~Ri---~~Q~-~~eek-~~~AD-~VI~N~gs~e~L~~qv~~ll~~l 195 (232)
T PLN02422 156 NRI---NAQM-PLDWK-RSKAD-IVIDNSGSLEDLKQQFQKVLEKI 195 (232)
T ss_pred HHH---HHcC-ChhHH-HhhCC-EEEECCCCHHHHHHHHHHHHHHH
Confidence 443 2222 22111 12222 45666889999999999988664
No 64
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=99.35 E-value=1.2e-11 Score=105.32 Aligned_cols=153 Identities=12% Similarity=0.062 Sum_probs=90.1
Q ss_pred EEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchH-HHHH-----------HHHHHHH
Q 023790 83 FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSE-DIIF-----------GLLSKRL 150 (277)
Q Consensus 83 i~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~-~~~~-----------~ll~~~l 150 (277)
|.|.+||||||+++.|++++.-..+. .+....+.+++.|+.+++.+..+..... .... ..+...+
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~---~~~~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l 77 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYK---VIITFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPAL 77 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEE---EEEEESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCc---ccccCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999987544332 1112234567888888888873333222 1111 1222222
Q ss_pred HcCCccCccEEEEcCccCC------------HHHHHHHH-hhc--CcCEEEEecCCHHHHHHhhcchH------HHHHHH
Q 023790 151 EDGYYRGEIGFILDGLPRS------------RIQAEILD-QLA--EIDLVVNFKCADNFIVTNRGGSL------KEKLEA 209 (277)
Q Consensus 151 ~~~~~~~~~g~IldGfPrt------------~~qae~l~-~~~--~~d~vI~L~~~~e~l~~Rl~~~~------~~rl~~ 209 (277)
. .+..+|.|.|..+ ......+. .+. .||++|+|+++++++.+|+..+- .+..+.
T Consensus 78 ~-----~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~~~~~~~~~~~~ 152 (186)
T PF02223_consen 78 K-----RGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGEKDDEEEEDLEY 152 (186)
T ss_dssp H-----TTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSSTTTTTTHHHHH
T ss_pred c-----CCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCccchHHHHHHHH
Confidence 2 3567777854321 12222222 233 89999999999999999993221 122222
Q ss_pred HHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHH
Q 023790 210 YAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGL 243 (277)
Q Consensus 210 y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I 243 (277)
+.+......+.++..+.++.||++.++++|.++|
T Consensus 153 ~~~~~~~y~~l~~~~~~~~iid~~~~~e~v~~~I 186 (186)
T PF02223_consen 153 LRRVREAYLELAKDPNNWVIIDASRSIEEVHEQI 186 (186)
T ss_dssp HHHHHHHHHHHHHTTTTEEEEETTS-HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCCCHHHHHhhC
Confidence 2222222333343356799999999999999886
No 65
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.33 E-value=3.9e-11 Score=99.92 Aligned_cols=147 Identities=19% Similarity=0.200 Sum_probs=90.5
Q ss_pred CCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHh-ccccchHHHHHHHHHHHHHcCCccCccEEEEc-
Q 023790 87 PRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYYRGEIGFILD- 164 (277)
Q Consensus 87 pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~~~~~g~Ild- 164 (277)
|||||||+++.||+.+|++++|+|+++.+.. |..+.+.+. .|+....+...+++.+.+.. ...+|--
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~------g~si~~i~~~~G~~~fr~~E~~~l~~l~~~-----~~~VIa~G 69 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERT------GMSISEIFAEEGEEAFRELESEALRELLKE-----NNCVIACG 69 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHH------TSHHHHHHHHHHHHHHHHHHHHHHHHHHCS-----SSEEEEE-
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHh------CCcHHHHHHcCChHHHHHHHHHHHHHHhcc-----CcEEEeCC
Confidence 7999999999999999999999999987764 344555543 35444455556666554443 2344433
Q ss_pred -CccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcchH-------HHHHHHHHHhchhHHHHHHhcCcEEEEeCCCCH
Q 023790 165 -GLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSL-------KEKLEAYAELGKPLEDYYQKQKKLLEFQVGSAP 236 (277)
Q Consensus 165 -GfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~~-------~~rl~~y~~~~~~l~~~y~~~~~li~Ida~~s~ 236 (277)
|.+......+.|. ....||||+++.+++.+|+...- ........+........|+.... +.++.+..+
T Consensus 70 GG~~~~~~~~~~L~---~~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~~R~~~Y~~~a~-~~v~~~~~~ 145 (158)
T PF01202_consen 70 GGIVLKEENRELLK---ENGLVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLFEREPLYEQAAD-IVVDTDGSP 145 (158)
T ss_dssp TTGGGSHHHHHHHH---HHSEEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHHHHHHHHHHHSS-EEEETSSCH
T ss_pred CCCcCcHHHHHHHH---hCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCe-EEEeCCCCC
Confidence 3555555555555 35689999999999999983211 11111111111123344554433 346666555
Q ss_pred -HHHHHHHHHHHH
Q 023790 237 -LETWQGLLTALH 248 (277)
Q Consensus 237 -eev~~~I~~~L~ 248 (277)
++++++|.+.|+
T Consensus 146 ~~~i~~~i~~~l~ 158 (158)
T PF01202_consen 146 PEEIAEEILEFLK 158 (158)
T ss_dssp HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhC
Confidence 999999998874
No 66
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.33 E-value=1.8e-11 Score=101.96 Aligned_cols=148 Identities=14% Similarity=0.179 Sum_probs=83.6
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccch----HHHH---HHHHHHHHHcC
Q 023790 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS----EDII---FGLLSKRLEDG 153 (277)
Q Consensus 81 Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip----~~~~---~~ll~~~l~~~ 153 (277)
|+|+|++||||||+|+.|++.++..+++.+++...... + .+..|.... .++. .+.+...+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 69 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANI---------E-KMSAGIPLNDDDRWPWLQNLNDASTAAAAK- 69 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHH---------H-HHHcCCCCChhhHHHHHHHHHHHHHHHHhc-
Confidence 57899999999999999999999999999886422100 0 000011010 1111 2222222222
Q ss_pred CccCccEEEEcCccCCHHHHHHHHhhcCcC-EEEEecCCHHHHHHhhcchHH-----HHHH-HHHHhchhHHHHHHhcCc
Q 023790 154 YYRGEIGFILDGLPRSRIQAEILDQLAEID-LVVNFKCADNFIVTNRGGSLK-----EKLE-AYAELGKPLEDYYQKQKK 226 (277)
Q Consensus 154 ~~~~~~g~IldGfPrt~~qae~l~~~~~~d-~vI~L~~~~e~l~~Rl~~~~~-----~rl~-~y~~~~~~l~~~y~~~~~ 226 (277)
....+|-.++.+ ....+.+... .++ .+|+|++|.+++.+|+..+-. ..++ .|.....+. +. ...
T Consensus 70 ---~~~~Vi~~t~~~-~~~r~~~~~~-~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~~~i~~~~~~~~~~~---~~-e~~ 140 (163)
T TIGR01313 70 ---NKVGIITCSALK-RHYRDILREA-EPNLHFIYLSGDKDVILERMKARKGHFMKADMLESQFAALEEPL---AD-ETD 140 (163)
T ss_pred ---CCCEEEEecccH-HHHHHHHHhc-CCCEEEEEEeCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCC---CC-CCc
Confidence 223344445432 2233334322 344 479999999999999943321 1111 111111111 11 125
Q ss_pred EEEEeCCCCHHHHHHHHHHHHH
Q 023790 227 LLEFQVGSAPLETWQGLLTALH 248 (277)
Q Consensus 227 li~Ida~~s~eev~~~I~~~L~ 248 (277)
++.||++.+++++.+++...|-
T Consensus 141 ~~~id~~~~~~~~~~~~~~~~~ 162 (163)
T TIGR01313 141 VLRVDIDQPLEGVEEDCIAVVL 162 (163)
T ss_pred eEEEECCCCHHHHHHHHHHHHh
Confidence 7889999999999999988763
No 67
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.33 E-value=8.1e-12 Score=108.01 Aligned_cols=163 Identities=9% Similarity=0.029 Sum_probs=96.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhH-HHHHHHHhccccchHHHH-------------
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLH-KQIANAVNRGEVVSEDII------------- 142 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg-~~i~~~l~~G~~ip~~~~------------- 142 (277)
.+++|+|.|.|||||||+|+.|++++|+.++..+|++|+.+.+..+.+ ...++.+..|+.++++..
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~ 81 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARA 81 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999998876432221 111222222333322111
Q ss_pred -----HHHHHHHHHcCCccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecC-CHHHHHHhhcchH--------HHHHH
Q 023790 143 -----FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKC-ADNFIVTNRGGSL--------KEKLE 208 (277)
Q Consensus 143 -----~~ll~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~-~~e~l~~Rl~~~~--------~~rl~ 208 (277)
..++...+ ..+..+|+||......+.+.... .. ..++++.+ ++++..+|+..+. .+++-
T Consensus 82 v~~~L~~va~~~l-----~~G~sVIvEgv~l~p~~~~~~~~-~~-v~~i~l~v~d~e~lr~Rl~~R~~~~~~~~p~~~~~ 154 (197)
T PRK12339 82 IMPGINRVIRRAL-----LNGEDLVIESLYFHPPMIDENRT-NN-IRAFYLYIRDAELHRSRLADRINYTHKNSPGKRLA 154 (197)
T ss_pred HHHHHHHHHHHHH-----HcCCCEEEEecCcCHHHHHHHHh-cC-eEEEEEEeCCHHHHHHHHHHHhhcccCCCcHHHHH
Confidence 11122222 24677999997665544322211 12 35666665 5777778884332 23444
Q ss_pred HHHHhchhHHHHHHhc---CcEEEEeCCCCHHHHHHHHHHHH
Q 023790 209 AYAELGKPLEDYYQKQ---KKLLEFQVGSAPLETWQGLLTAL 247 (277)
Q Consensus 209 ~y~~~~~~l~~~y~~~---~~li~Ida~~s~eev~~~I~~~L 247 (277)
.|..+...+.+|.-+. ..+-.|+ +.+.++.++.+++.+
T Consensus 155 ~~~~~ir~i~~~l~~~a~~~~i~~i~-~~~~~~~~~~~~~~~ 195 (197)
T PRK12339 155 EHLPEYRTIMDYSIADARGYNIKVID-TDNYREARNPLLDPI 195 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeec-CccHHHHHHHHHHHh
Confidence 4444445555555332 1244455 677888888877654
No 68
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.32 E-value=6.2e-11 Score=102.70 Aligned_cols=159 Identities=14% Similarity=0.174 Sum_probs=100.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhcccc-----ch-------------
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEV-----VS------------- 138 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~-----ip------------- 138 (277)
+++.|.++|.|||||||+|+.+++ +|+++|++|+++|+...++++....+.+.+..... +.
T Consensus 1 ~~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~ 79 (201)
T COG0237 1 MMLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPE 79 (201)
T ss_pred CceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHH
Confidence 367899999999999999999999 99999999999999888887776666665442211 00
Q ss_pred -----HHHHHHHHHHHHHcCCcc-CccEEEEcCccCCHHHHHHHHhh---cCcCEEEEecCCHHHHHHhhcch-------
Q 023790 139 -----EDIIFGLLSKRLEDGYYR-GEIGFILDGLPRSRIQAEILDQL---AEIDLVVNFKCADNFIVTNRGGS------- 202 (277)
Q Consensus 139 -----~~~~~~ll~~~l~~~~~~-~~~g~IldGfPrt~~qae~l~~~---~~~d~vI~L~~~~e~l~~Rl~~~------- 202 (277)
+.++..++...+. .... ...++++-..| .|.+. ..+|.||.++||+++..+|+..+
T Consensus 80 ~~~~Le~i~hPli~~~~~-~~~~~~~~~~~~~eip-------lL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~~~~e~ 151 (201)
T COG0237 80 ARLKLEKILHPLIRAEIK-VVIDGARSPYVVLEIP-------LLFEAGGEKYFDKVIVVYAPPEIRLERLMKRDGLDEED 151 (201)
T ss_pred HHHHHHHhhhHHHHHHHH-HHHHHhhCCceEEEch-------HHHhccccccCCEEEEEECCHHHHHHHHHhcCCCCHHH
Confidence 1233344444331 1000 11213333343 23222 12789999999999999999432
Q ss_pred HHHHHHHHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 203 LKEKLEAYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 203 ~~~rl~~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
...++ ..+. +..+-+...+ +.++++.+++++.+++...++..
T Consensus 152 ~~~~~---~~Q~-~~~ek~~~ad--~vi~n~~~i~~l~~~i~~~~~~~ 193 (201)
T COG0237 152 AEARL---ASQR-DLEEKLALAD--VVIDNDGSIENLLEQIEKLLKEL 193 (201)
T ss_pred HHHHH---HhcC-CHHHHHhhcC--ChhhcCCCHHHHHHHHHHHHHHH
Confidence 22222 2222 2222232222 34577899999999999888764
No 69
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.30 E-value=5.4e-11 Score=103.58 Aligned_cols=162 Identities=9% Similarity=0.056 Sum_probs=99.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhc--------cc-cchH--------
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR--------GE-VVSE-------- 139 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~--------G~-~ip~-------- 139 (277)
.++.|.|+|++||||||+++.|++ +|+++++.|.+.++...++......+...+.. |. .+..
T Consensus 4 ~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf 82 (208)
T PRK14731 4 LPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVF 82 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHh
Confidence 457899999999999999999997 89999999999888776665544444444311 21 0111
Q ss_pred ----------HHHHHHHHHHHHcCC--c-cCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhc------
Q 023790 140 ----------DIIFGLLSKRLEDGY--Y-RGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG------ 200 (277)
Q Consensus 140 ----------~~~~~ll~~~l~~~~--~-~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~------ 200 (277)
.++...+...+.+.. + ..+..+|+-+.|.-.+ . .+. ..+|.+|++++|.+++.+|+.
T Consensus 83 ~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~pLL~e-~-~~~--~~~d~ii~V~a~~e~~~~Rl~~R~~~s 158 (208)
T PRK14731 83 SDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEAAILFE-S-GGD--AGLDFIVVVAADTELRLERAVQRGMGS 158 (208)
T ss_pred CCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEeeeeee-c-Cch--hcCCeEEEEECCHHHHHHHHHHcCCCC
Confidence 122233332222110 0 1122455544553211 1 111 247999999999999999982
Q ss_pred -chHHHHHHHHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 201 -GSLKEKLEAYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 201 -~~~~~rl~~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
+.+.+|++.+......+ ... -+.|+.+.+++++.+++.++++.
T Consensus 159 ~e~~~~Ri~~q~~~~~~~----~~a--d~vI~N~g~~e~l~~~i~~~~~~ 202 (208)
T PRK14731 159 REEIRRRIAAQWPQEKLI----ERA--DYVIYNNGTLDELKAQTEQLYQV 202 (208)
T ss_pred HHHHHHHHHHcCChHHHH----HhC--CEEEECCCCHHHHHHHHHHHHHH
Confidence 34566665433322222 111 24566789999999999988764
No 70
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.29 E-value=7e-11 Score=105.30 Aligned_cols=162 Identities=12% Similarity=0.123 Sum_probs=101.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHh------ccccchH------------
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN------RGEVVSE------------ 139 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~------~G~~ip~------------ 139 (277)
+++|.|+|++||||||+++.|++++|+++||+|.+.++...++.+..+.+.+.+. +|. +..
T Consensus 1 M~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~-idR~~L~~~VF~d~~ 79 (244)
T PTZ00451 1 MILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGE-LNRAELGKIIFSDAQ 79 (244)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCc-CCHHHHHHHHhCCHH
Confidence 3679999999999999999999999999999999999998888777777766552 222 111
Q ss_pred ------HHHHHHHHHHHHcC-----------Cc--cCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhc
Q 023790 140 ------DIIFGLLSKRLEDG-----------YY--RGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG 200 (277)
Q Consensus 140 ------~~~~~ll~~~l~~~-----------~~--~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~ 200 (277)
.++...+..++.+. +. ....-+|+| .|--.+ ..... ..+|.+|+++||.++..+|+.
T Consensus 80 ~~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~e-vPLL~E-~~~~~--~~~D~iv~V~a~~e~ri~RL~ 155 (244)
T PTZ00451 80 ARRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLD-APTLFE-TKTFT--YFVSASVVVSCSEERQIERLR 155 (244)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEE-echhhc-cCchh--hcCCeEEEEECCHHHHHHHHH
Confidence 22223332222110 00 112245666 343211 00001 146999999999999999983
Q ss_pred c-------hHHHHHHHHHHhchhHHHHHHhcCcEEEEeCC--CCHHHHHHHHHHHHHHc
Q 023790 201 G-------SLKEKLEAYAELGKPLEDYYQKQKKLLEFQVG--SAPLETWQGLLTALHLQ 250 (277)
Q Consensus 201 ~-------~~~~rl~~y~~~~~~l~~~y~~~~~li~Ida~--~s~eev~~~I~~~L~~~ 250 (277)
. .+++|++. +.. ..+ ......+ .|+.+ .+++++.++|.+.++..
T Consensus 156 ~R~g~s~eea~~Ri~~---Q~~-~~e-k~~~aD~-VI~N~~~g~~~~L~~~v~~~~~~~ 208 (244)
T PTZ00451 156 KRNGFSKEEALQRIGS---QMP-LEE-KRRLADY-IIENDSADDLDELRGSVCDCVAWM 208 (244)
T ss_pred HcCCCCHHHHHHHHHh---CCC-HHH-HHHhCCE-EEECCCCCCHHHHHHHHHHHHHHH
Confidence 3 34444432 222 221 2222223 34556 89999999999987653
No 71
>PRK07261 topology modulation protein; Provisional
Probab=99.28 E-value=1.4e-11 Score=104.06 Aligned_cols=96 Identities=19% Similarity=0.196 Sum_probs=69.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCccCc
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (277)
++|+|+|+|||||||+|+.|++.+|+++++.|++.... + ....+.+.....+...+.+
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~---~-------------~~~~~~~~~~~~~~~~~~~------ 58 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP---N-------------WQERDDDDMIADISNFLLK------ 58 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc---c-------------cccCCHHHHHHHHHHHHhC------
Confidence 57999999999999999999999999999997764321 0 0112333344455444443
Q ss_pred cEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhh
Q 023790 159 IGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR 199 (277)
Q Consensus 159 ~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl 199 (277)
..||+||......+...+. ..|.+|+|++|.++++.|+
T Consensus 59 ~~wIidg~~~~~~~~~~l~---~ad~vI~Ld~p~~~~~~R~ 96 (171)
T PRK07261 59 HDWIIDGNYSWCLYEERMQ---EADQIIFLNFSRFNCLYRA 96 (171)
T ss_pred CCEEEcCcchhhhHHHHHH---HCCEEEEEcCCHHHHHHHH
Confidence 3499999976644444444 4799999999999999998
No 72
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.24 E-value=3.2e-10 Score=99.42 Aligned_cols=166 Identities=12% Similarity=0.039 Sum_probs=85.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCCccchh-HHHH-HhcCCCChhHHH------HHHHHhccc---cchHHHHHHHHHH
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMS-SIVR-QDLSPRSSLHKQ------IANAVNRGE---VVSEDIIFGLLSK 148 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~-dllr-~~~~~~~~lg~~------i~~~l~~G~---~ip~~~~~~ll~~ 148 (277)
.|+|.|..||||||+++.|+++++...+... .... ...+.+..+++. ++.+..... ..+.....-++..
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~ 80 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS 80 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence 4899999999999999999999987544222 1110 001111222211 333332221 1111111111222
Q ss_pred HHHcC------CccCccEEEEcCccCCHH-HH--------------HH---HH-----hhcCcCEEEEecCCHHHHHHhh
Q 023790 149 RLEDG------YYRGEIGFILDGLPRSRI-QA--------------EI---LD-----QLAEIDLVVNFKCADNFIVTNR 199 (277)
Q Consensus 149 ~l~~~------~~~~~~g~IldGfPrt~~-qa--------------e~---l~-----~~~~~d~vI~L~~~~e~l~~Rl 199 (277)
+..+. ....+..+|+|.++-+.. .+ +. +. ....||++|+|++|++++.+|+
T Consensus 81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~Ri 160 (219)
T cd02030 81 RLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRI 160 (219)
T ss_pred HHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHH
Confidence 22210 012356788898753311 11 11 11 1146899999999999999998
Q ss_pred cchHH---H-HHHHHHHhchhH-HHH----HHhcCcEEEEeCC--CCHHHHHHHHHH
Q 023790 200 GGSLK---E-KLEAYAELGKPL-EDY----YQKQKKLLEFQVG--SAPLETWQGLLT 245 (277)
Q Consensus 200 ~~~~~---~-rl~~y~~~~~~l-~~~----y~~~~~li~Ida~--~s~eev~~~I~~ 245 (277)
..+-+ . .-..|.+..... .++ |.+...++.+|++ .+++++..+|..
T Consensus 161 ~~R~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~~~~~~~e~i~~~I~~ 217 (219)
T cd02030 161 KKRGDPHEMKVTSAYLQDIENAYKKTFLPEISEHSEVLQYDWTEAGDTEKVVEDIEY 217 (219)
T ss_pred HHcCCchhhcccHHHHHHHHHHHHHHHHHhhccCCCEEEEeCCChhhHHHHHHHHHc
Confidence 33211 0 011222222211 122 3334578899988 888888887754
No 73
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.24 E-value=4.5e-11 Score=96.76 Aligned_cols=109 Identities=19% Similarity=0.164 Sum_probs=70.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChh---HHHHHHHHhccccchHHHHHHHHHHHHHcCCcc
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSL---HKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~l---g~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (277)
+|+|+|+|||||||+++.|++.++..+|+.|++.........+- .....+. -.+.+...+...+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~---- 69 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEER-------AYQILNAAIRKALRN---- 69 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHH-------HHHHHHHHHHHHHHT----
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHH-------HHHHHHHHHHHHHHc----
Confidence 58999999999999999999999999999988776543311110 0000000 112334455555554
Q ss_pred CccEEEEcCccCCHHHHHHHHhh----cCcCEEEEecCCHHHHHHhhc
Q 023790 157 GEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNRG 200 (277)
Q Consensus 157 ~~~g~IldGfPrt~~qae~l~~~----~~~d~vI~L~~~~e~l~~Rl~ 200 (277)
+..+|+|+.-....+.+.+.++ ...-.+|+|+++++++.+|+.
T Consensus 70 -g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~ 116 (143)
T PF13671_consen 70 -GNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLA 116 (143)
T ss_dssp -T-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHH
T ss_pred -CCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHH
Confidence 4568888765555544444433 224579999999999999984
No 74
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.24 E-value=3.8e-11 Score=102.61 Aligned_cols=153 Identities=15% Similarity=0.183 Sum_probs=94.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHh------ccccch---------------
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN------RGEVVS--------------- 138 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~------~G~~ip--------------- 138 (277)
+|.|+|++||||||+++.|++..|++++++|++.++.+.++.+....+.+.+. .|..--
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~ 80 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK 80 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence 48999999999999999999998899999999999998887777666665553 232110
Q ss_pred --HHHHHHHH----HHHHHcCCccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcc-------hHHH
Q 023790 139 --EDIIFGLL----SKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG-------SLKE 205 (277)
Q Consensus 139 --~~~~~~ll----~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~-------~~~~ 205 (277)
+.++...+ .+.+... .....+|+-+.|.-.+. .+. ..+|.+|++++|.+++.+|+.. .+.+
T Consensus 81 ~le~ilhP~i~~~i~~~i~~~--~~~~~~vvi~~pll~e~--~~~--~~~D~vv~V~~~~~~~~~Rl~~R~~~s~~~~~~ 154 (188)
T TIGR00152 81 WLNNLLHPLIREWMKKLLAQF--QSKLAYVLLDVPLLFEN--KLR--SLCDRVIVVDVSPQLQLERLMQRDNLTEEEVQK 154 (188)
T ss_pred HHHHhhCHHHHHHHHHHHHHh--hcCCCEEEEEchHhhhC--CcH--HhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHH
Confidence 11122222 2222221 11223444445543221 111 2478999999999999999833 2334
Q ss_pred HHHHHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHH
Q 023790 206 KLEAYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLL 244 (277)
Q Consensus 206 rl~~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~ 244 (277)
|++. +. +....-...+ ..|+.+.+++++..++.
T Consensus 155 r~~~---q~-~~~~~~~~ad--~vI~N~~~~e~l~~~~~ 187 (188)
T TIGR00152 155 RLAS---QM-DIEERLARAD--DVIDNSATLADLVKQLE 187 (188)
T ss_pred HHHh---cC-CHHHHHHhCC--EEEECCCCHHHHHHHHh
Confidence 4432 22 2222111122 45566889999988875
No 75
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.23 E-value=2e-10 Score=99.75 Aligned_cols=163 Identities=13% Similarity=0.098 Sum_probs=98.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhc-----cccch-------------
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR-----GEVVS------------- 138 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~-----G~~ip------------- 138 (277)
.++.|.|+|++||||||+++.|++++|+++++.|.+.++.+.+ .+....+.+.+.. |. +.
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~~~fG~~i~~~g~-idR~~L~~~vF~d~~ 82 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIAEKFGDEIVMNKQ-INRAMLRAIITESKE 82 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHHHHhCHHhccCCC-cCHHHHHHHHhCCHH
Confidence 4678999999999999999999999999999999999888765 4444445444322 21 11
Q ss_pred -----HHHHHHHHHHHHHcCCc-cCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcc-------hHHH
Q 023790 139 -----EDIIFGLLSKRLEDGYY-RGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG-------SLKE 205 (277)
Q Consensus 139 -----~~~~~~ll~~~l~~~~~-~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~-------~~~~ 205 (277)
++++...+.+++..... ....-+|+| .|.-.+. .+.....+|.+|+++||.++.++|+.+ ...+
T Consensus 83 ~~~~Le~i~HP~V~~~~~~~~~~~~~~~vv~e-ipLL~E~--~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~~s~~~a~~ 159 (204)
T PRK14733 83 AKKWLEDYLHPVINKEIKKQVKESDTVMTIVD-IPLLGPY--NFRHYDYLKKVIVIKADLETRIRRLMERDGKNRQQAVA 159 (204)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCCeEEEE-echhhhc--cCchhhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHH
Confidence 13334444443332100 112335555 3432211 000012478999999999999999833 2333
Q ss_pred HHHHHHHhchhHHHHHHhcCcEEEEeCCC-CHHHHHHHHHHHHHHc
Q 023790 206 KLEAYAELGKPLEDYYQKQKKLLEFQVGS-APLETWQGLLTALHLQ 250 (277)
Q Consensus 206 rl~~y~~~~~~l~~~y~~~~~li~Ida~~-s~eev~~~I~~~L~~~ 250 (277)
|+ ..|.. ..+.-+..+ ++|+.+. +.+++.+++..++.+-
T Consensus 160 ri---~~Q~~-~eek~~~aD--~VI~N~g~~~~~l~~~~~~~~~~~ 199 (204)
T PRK14733 160 FI---NLQIS-DKEREKIAD--FVIDNTELTDQELESKLITTINEI 199 (204)
T ss_pred HH---HhCCC-HHHHHHhCC--EEEECcCCCHHHHHHHHHHHHHHH
Confidence 33 22322 222222223 3456677 9999999999888753
No 76
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.22 E-value=1.7e-10 Score=94.61 Aligned_cols=107 Identities=19% Similarity=0.208 Sum_probs=64.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCccCcc
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEI 159 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~~ 159 (277)
.|+|+|+|||||||+|+.|++.+|+++++.++++...... ........ .|...-.....+++.. +.. ..
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~--~~~~~~~~---~~~~~~~~~e~~~~~~-~~~-----~~ 69 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM--SIPEIFAE---EGEEGFRELEREVLLL-LLT-----KE 69 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCC--CHHHHHHH---HCHHHHHHHHHHHHHH-Hhc-----cC
Confidence 3899999999999999999999999999999888766432 22221111 1221111111222222 222 22
Q ss_pred EEEEc-C--ccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhc
Q 023790 160 GFILD-G--LPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG 200 (277)
Q Consensus 160 g~Ild-G--fPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~ 200 (277)
++|++ | +...... ...+.....+|||++|.+++.+|+.
T Consensus 70 ~~vi~~g~~~i~~~~~---~~~~~~~~~~i~l~~~~e~~~~R~~ 110 (154)
T cd00464 70 NAVIATGGGAVLREEN---RRLLLENGIVVWLDASPEELLERLA 110 (154)
T ss_pred CcEEECCCCccCcHHH---HHHHHcCCeEEEEeCCHHHHHHHhc
Confidence 44554 2 2122221 2222346789999999999999984
No 77
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.22 E-value=1.1e-10 Score=113.67 Aligned_cols=147 Identities=16% Similarity=0.170 Sum_probs=88.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHh-ccccchHHHHHHHHHHHHHcCC--c
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGY--Y 155 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~--~ 155 (277)
|+|+|+|+|||||||+++.|++++|++++++|+++.+.. +.+ +.+.+. .|+....+...+.+++...... .
T Consensus 1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~--g~~----i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vi 74 (488)
T PRK13951 1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERRE--GRS----VRRIFEEDGEEYFRLKEKELLRELVERDNVVV 74 (488)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHc--CCC----HHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEE
Confidence 579999999999999999999999999999999887642 222 333332 3544445555555554433211 1
Q ss_pred cCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcch----HHHHHHHHHHhchhHHHHHHhcCcEEEEe
Q 023790 156 RGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS----LKEKLEAYAELGKPLEDYYQKQKKLLEFQ 231 (277)
Q Consensus 156 ~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~----~~~rl~~y~~~~~~l~~~y~~~~~li~Id 231 (277)
..+.|+|+|. ...+.|.+ +.+|||+++.+++.+|+..+ +....+...+..+...+.|++ +..||
T Consensus 75 s~Gggvv~~~-----~~r~~l~~----~~vI~L~as~e~l~~Rl~~~~RPLl~~~~e~l~~L~~~R~~lY~~---~~~ID 142 (488)
T PRK13951 75 ATGGGVVIDP-----ENRELLKK----EKTLFLYAPPEVLMERVTTENRPLLREGKERIREIWERRKQFYTE---FRGID 142 (488)
T ss_pred ECCCccccCh-----HHHHHHhc----CeEEEEECCHHHHHHHhccCCCCCccccHHHHHHHHHHHHHHHhc---ccEEE
Confidence 2334444442 33344432 46999999999999998431 110011222233334455654 24566
Q ss_pred C-CCCHHHHHHHH
Q 023790 232 V-GSAPLETWQGL 243 (277)
Q Consensus 232 a-~~s~eev~~~I 243 (277)
+ +.+++++.+++
T Consensus 143 t~~~s~~e~~~~i 155 (488)
T PRK13951 143 TSKLNEWETTALV 155 (488)
T ss_pred CCCCCHHHHHHHH
Confidence 5 46676666554
No 78
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.22 E-value=1.4e-10 Score=98.58 Aligned_cols=159 Identities=11% Similarity=0.090 Sum_probs=96.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccch-------HHHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS-------EDIIFGLLSKR 149 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip-------~~~~~~ll~~~ 149 (277)
.+..++|+|++||||||+++.|+..++..+++.+++.... .++.. ..|.... ...+.......
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~---------~~r~~-~~g~~~~~~~~~~~~~~~~~~~~~~ 71 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAK---------NIDKM-SQGIPLTDEDRLPWLERLNDASYSL 71 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHh---------HHHHH-hcCCCCCcccchHHHHHHHHHHHHH
Confidence 3557899999999999999999999999888876652210 01111 1121111 11122222222
Q ss_pred HHcCCccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcchHH--HHHHHHHHhchhHHHHHHhcCcE
Q 023790 150 LEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLK--EKLEAYAELGKPLEDYYQKQKKL 227 (277)
Q Consensus 150 l~~~~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~~~--~rl~~y~~~~~~l~~~y~~~~~l 227 (277)
+.. ...|+|+..+-+ ..+.+.+.+...+-.+|+|++|++++.+|+..+-. ...+.+..+...+...-.....+
T Consensus 72 ~~~----~~~g~iv~s~~~-~~~R~~~r~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~~~~~vl~~Q~~~~e~~~~~e~~~ 146 (176)
T PRK09825 72 YKK----NETGFIVCSSLK-KQYRDILRKSSPNVHFLWLDGDYETILARMQRRAGHFMPPDLLQSQFDALERPCADEHDI 146 (176)
T ss_pred Hhc----CCCEEEEEEecC-HHHHHHHHhhCCCEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHcCCCCCCcCCe
Confidence 221 256788765533 33334444444455799999999999999954421 12333443332222111112248
Q ss_pred EEEeCCCCHHHHHHHHHHHHHHc
Q 023790 228 LEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 228 i~Ida~~s~eev~~~I~~~L~~~ 250 (277)
+.||++.+++++.+++...++.+
T Consensus 147 ~~~d~~~~~~~~~~~~~~~~~~~ 169 (176)
T PRK09825 147 ARIDVNHDIENVTEQCRQAVQAF 169 (176)
T ss_pred EEEECCCCHHHHHHHHHHHHHHH
Confidence 89999999999999999999876
No 79
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.21 E-value=8.9e-10 Score=93.04 Aligned_cols=167 Identities=18% Similarity=0.172 Sum_probs=108.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHH-----------H
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIF-----------G 144 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~-----------~ 144 (277)
.++..|++.|..+|||||+|..|.+.+. +-... ..+...-...++.|+.|..++.+..-.|+.++. .
T Consensus 3 ~rg~liV~eGlDrsgKstQ~~~l~~~l~-~~~~~-~~l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~ 80 (208)
T KOG3327|consen 3 IRGALIVLEGLDRSGKSTQCGKLVESLI-PGLDP-AELLRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVS 80 (208)
T ss_pred CCccEEeeeccccCCceeehhHHHHHHH-hccCh-HHhhhcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHH
Confidence 4789999999999999999999999873 22222 222233344577888898888877666665442 3
Q ss_pred HHHHHHHcCCccCccEEEEcCccCCHH---HHHHHHh---------hcCcCEEEEecCCHHHHHHhhcchHHHHHHH--H
Q 023790 145 LLSKRLEDGYYRGEIGFILDGLPRSRI---QAEILDQ---------LAEIDLVVNFKCADNFIVTNRGGSLKEKLEA--Y 210 (277)
Q Consensus 145 ll~~~l~~~~~~~~~g~IldGfPrt~~---qae~l~~---------~~~~d~vI~L~~~~e~l~~Rl~~~~~~rl~~--y 210 (277)
++++.+.+ +..+|+|.|..+-. -|..++. +..||+|++|+++++.+.+|- ..-.+|++. |
T Consensus 81 ~i~e~l~k-----g~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~~a~rg-gfG~Erye~v~f 154 (208)
T KOG3327|consen 81 LIKEKLAK-----GTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPEDAARRG-GFGEERYETVAF 154 (208)
T ss_pred HHHHHHhc-----CCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHHHHHhc-CcchhHHHHHHH
Confidence 45555554 45688887654321 1333321 258999999999999966664 222233321 2
Q ss_pred HHhchhHHH-HHHhc-CcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 211 AELGKPLED-YYQKQ-KKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 211 ~~~~~~l~~-~y~~~-~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
++....... ..++. ..++.+||+.+.++|.++|..+++.-
T Consensus 155 qekv~~~~q~l~r~e~~~~~~vDAs~sve~V~~~V~~i~e~~ 196 (208)
T KOG3327|consen 155 QEKVLVFFQKLLRKEDLNWHVVDASKSVEKVHQQVRSLVENV 196 (208)
T ss_pred HHHHHHHHHHHHhccCCCeEEEecCccHHHHHHHHHHHHHHh
Confidence 222211111 11222 36889999999999999999888764
No 80
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.21 E-value=5.6e-10 Score=94.21 Aligned_cols=159 Identities=16% Similarity=0.066 Sum_probs=85.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC-----CCccchhHHHHHhcCCCC-hhHHHHHHHHhccccchHHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQDLSPRS-SLHKQIANAVNRGEVVSEDIIFGLLSKR 149 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g-----~~~Is~~dllr~~~~~~~-~lg~~i~~~l~~G~~ip~~~~~~ll~~~ 149 (277)
.+|..|+|+|+|||||||+|+.|+++++ ..+++. |-+++.+.... ....... .......+...
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~-d~~r~~~~~~~~~~~~~~~----------~~~~~~~l~~~ 73 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDG-DELREILGHYGYDKQSRIE----------MALKRAKLAKF 73 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEec-HHHHhhcCCCCCCHHHHHH----------HHHHHHHHHHH
Confidence 4678999999999999999999999885 556654 44555432210 0000000 00011222222
Q ss_pred HHcCCccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcchHHHHH--HHHHHhchhHHHHHHhcCcE
Q 023790 150 LEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLKEKL--EAYAELGKPLEDYYQKQKKL 227 (277)
Q Consensus 150 l~~~~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~~~~rl--~~y~~~~~~l~~~y~~~~~l 227 (277)
+.. .+..+|.||......-.+.......+.++|+|++|++++.+|....+.... +...+......+.|.... -
T Consensus 74 l~~----~g~~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~~~~~~~~~~~~~A-d 148 (176)
T PRK05541 74 LAD----QGMIVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQKGLYTKALKGEIKNVVGVDIPFDEPKA-D 148 (176)
T ss_pred HHh----CCCEEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhchhhHHHHHHcCcccccccCCCcccCCCC-C
Confidence 321 245788887532111111112223456899999999999999853211110 011111111223343322 2
Q ss_pred EEEeCC--CCHHHHHHHHHHHHHHc
Q 023790 228 LEFQVG--SAPLETWQGLLTALHLQ 250 (277)
Q Consensus 228 i~Ida~--~s~eev~~~I~~~L~~~ 250 (277)
+.||++ .++++++++|.+.+..+
T Consensus 149 ~vI~~~~~~~~~~~v~~i~~~l~~~ 173 (176)
T PRK05541 149 LVIDNSCRTSLDEKVDLILNKLKLR 173 (176)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 334433 58999999998887654
No 81
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.20 E-value=2.2e-10 Score=102.23 Aligned_cols=150 Identities=15% Similarity=0.174 Sum_probs=85.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC-----CCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCC
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY 154 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~g-----~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~ 154 (277)
.|+|+|+|||||||+|+.|+++++ +.+++. |.+++....... .++....+....++...+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~-D~lr~~~~~~~~----------~~e~~~~~~~~~~i~~~l~~-- 67 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT-DLIRESFPVWKE----------KYEEFIRDSTLYLIKTALKN-- 67 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc-HHHHHHhHHhhH----------HhHHHHHHHHHHHHHHHHhC--
Confidence 389999999999999999999873 345555 555554321100 01111122334455555543
Q ss_pred ccCccEEEEcCccCCHHHHHHHH----hhcCcCEEEEecCCHHHHHHhhcch--------HHHHHHHHHHhchhHHHHHH
Q 023790 155 YRGEIGFILDGLPRSRIQAEILD----QLAEIDLVVNFKCADNFIVTNRGGS--------LKEKLEAYAELGKPLEDYYQ 222 (277)
Q Consensus 155 ~~~~~g~IldGfPrt~~qae~l~----~~~~~d~vI~L~~~~e~l~~Rl~~~--------~~~rl~~y~~~~~~l~~~y~ 222 (277)
+..+|+|+......+...+. ....+.++|+|++|.+++.+|...+ +++.+..|+ .|...++
T Consensus 68 ---~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~~~~~~i~~l~~r~e---~p~~~~~- 140 (249)
T TIGR03574 68 ---KYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEKIPNEVIKDMYEKFD---EPGTKYS- 140 (249)
T ss_pred ---CCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCCCCHHHHHHHHHhhC---CCCCCCC-
Confidence 34688998654333322222 2234567999999999999998432 111111111 1111110
Q ss_pred hcCcEEEEeCCC--CHHHHHHHHHHHHHH
Q 023790 223 KQKKLLEFQVGS--APLETWQGLLTALHL 249 (277)
Q Consensus 223 ~~~~li~Ida~~--s~eev~~~I~~~L~~ 249 (277)
-....++||++. +++++++.|...+..
T Consensus 141 wd~~~~~vd~~~~~~~~ei~~~i~~~~~~ 169 (249)
T TIGR03574 141 WDLPDLTIDTTKKIDYNEILEEILEISEN 169 (249)
T ss_pred ccCceEEecCCCCCCHHHHHHHHHHHhhc
Confidence 012467788765 679999999987754
No 82
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.20 E-value=1.2e-10 Score=100.57 Aligned_cols=157 Identities=11% Similarity=0.090 Sum_probs=98.8
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhc------cccch----------------
Q 023790 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR------GEVVS---------------- 138 (277)
Q Consensus 81 Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~------G~~ip---------------- 138 (277)
|.|.|++||||||+++.|++ +|+.+++.|++.++.+.++.+..+.+.+.+.. |. +.
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~-idr~~L~~~vF~~~~~~~ 79 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGK-PNRKKISEIVFNDEEKLK 79 (196)
T ss_pred EEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCc-cCHHHHHHHHhCCHHHHH
Confidence 78999999999999999976 69999999999999888777777766665532 32 11
Q ss_pred --HHHHHHHHHHHHHcCCc-cCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcc-------hHHHHHH
Q 023790 139 --EDIIFGLLSKRLEDGYY-RGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG-------SLKEKLE 208 (277)
Q Consensus 139 --~~~~~~ll~~~l~~~~~-~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~-------~~~~rl~ 208 (277)
++++...+...+....- .....+++-..|.-.+. .+. ..+|.+|++++|+++..+|+.. .+..|+.
T Consensus 80 ~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~pLL~E~--~~~--~~~D~vi~V~a~~e~r~~RL~~R~g~s~e~a~~ri~ 155 (196)
T PRK14732 80 ALNELIHPLVRKDFQKILQTTAEGKLVIWEVPLLFET--DAY--TLCDATVTVDSDPEESILRTISRDGMKKEDVLARIA 155 (196)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCcEEEEeeeeeEc--Cch--hhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 13344444433322100 01123444445543220 011 2479999999999999999832 3444443
Q ss_pred HHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 209 AYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 209 ~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
. +. +..+.-...+ +.|+.+.+++++..++.+.++.
T Consensus 156 ~---Q~-~~~~k~~~aD--~vI~N~~~~~~l~~~v~~l~~~ 190 (196)
T PRK14732 156 S---QL-PITEKLKRAD--YIVRNDGNREGLKEECKILYST 190 (196)
T ss_pred H---cC-CHHHHHHhCC--EEEECCCCHHHHHHHHHHHHHH
Confidence 2 22 3333222223 3456678999999999987753
No 83
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.19 E-value=3.6e-10 Score=95.49 Aligned_cols=161 Identities=15% Similarity=0.153 Sum_probs=86.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCC--ccchhHHHHHhcCCCChhHHHHHHHH-hcc--ccchHHH---HHHHHHHH
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP--RISMSSIVRQDLSPRSSLHKQIANAV-NRG--EVVSEDI---IFGLLSKR 149 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~--~Is~~dllr~~~~~~~~lg~~i~~~l-~~G--~~ip~~~---~~~ll~~~ 149 (277)
+.+|+|.|+|||||||+|+.|++.++.. |++.|++... +....... .+.+ .++ ...++.. ....+...
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 77 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA-LPLKCQDA---EGGIEFDGDGGVSPGPEFRLLEGAWYEA 77 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh-cChhhccc---ccccccCccCCcccchHHHHHHHHHHHH
Confidence 4579999999999999999999998654 4567665543 22100000 0000 011 1111111 12222222
Q ss_pred HHcCCccCccEEEEcC-ccCCHHHHHHHHhhcC-cCEEEEecCCHHHHHHhhcchHHHHHHHHHHhchhHHHHHHh-cCc
Q 023790 150 LEDGYYRGEIGFILDG-LPRSRIQAEILDQLAE-IDLVVNFKCADNFIVTNRGGSLKEKLEAYAELGKPLEDYYQK-QKK 226 (277)
Q Consensus 150 l~~~~~~~~~g~IldG-fPrt~~qae~l~~~~~-~d~vI~L~~~~e~l~~Rl~~~~~~rl~~y~~~~~~l~~~y~~-~~~ 226 (277)
+... ...+..+|+|. ++......+.+..+.. +-..|+++||.+++.+|...+-.. ...+.. ...+.+.. ...
T Consensus 78 ~~~~-l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~~~-~~~~~~---~~~~~~~~~~~~ 152 (175)
T cd00227 78 VAAM-ARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARGDR-VPGQAR---KQARVVHAGVEY 152 (175)
T ss_pred HHHH-HhCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcCCc-cchHHH---HHHHHhcCCCcc
Confidence 2211 12357789986 4422222233333333 347999999999999999543211 111100 00111221 223
Q ss_pred EEEEeCC-CCHHHHHHHHHHHH
Q 023790 227 LLEFQVG-SAPLETWQGLLTAL 247 (277)
Q Consensus 227 li~Ida~-~s~eev~~~I~~~L 247 (277)
.+.||++ .+++|++++|++.|
T Consensus 153 dl~iDts~~s~~e~a~~i~~~l 174 (175)
T cd00227 153 DLEVDTTHKTPIECARAIAARV 174 (175)
T ss_pred eEEEECCCCCHHHHHHHHHHhc
Confidence 5688876 68999999998875
No 84
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.19 E-value=7.1e-11 Score=100.33 Aligned_cols=115 Identities=21% Similarity=0.266 Sum_probs=77.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhcccc-----ch----------------
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEV-----VS---------------- 138 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~-----ip---------------- 138 (277)
+|.|+|+|||||||+++.|++ +|+++|++|++.++...++.+.+..+.+.+..+.+ +.
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 79 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence 378999999999999999999 99999999999999888877777777777643211 11
Q ss_pred --HHHHHHHHHHHHHcCC--ccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhc
Q 023790 139 --EDIIFGLLSKRLEDGY--YRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG 200 (277)
Q Consensus 139 --~~~~~~ll~~~l~~~~--~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~ 200 (277)
++++...+..++.... .....-+|++ .|.-.+. .+. ..+|.+|+++||+++.++|+.
T Consensus 80 ~l~~i~hp~i~~~~~~~~~~~~~~~~vive-~plL~e~--~~~--~~~D~vv~V~a~~~~ri~Rl~ 140 (179)
T cd02022 80 KLEAITHPLIRKEIEEQLAEARKEKVVVLD-IPLLFET--GLE--KLVDRVIVVDAPPEIQIERLM 140 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCEEEEE-ehHhhcC--CcH--HhCCeEEEEECCHHHHHHHHH
Confidence 2344444444443211 0111234445 4432221 111 247999999999999999983
No 85
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.19 E-value=7e-10 Score=94.69 Aligned_cols=155 Identities=12% Similarity=0.109 Sum_probs=87.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCC-----ChhHHHHHHHHhccccchHHHHH--------H
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPR-----SSLHKQIANAVNRGEVVSEDIIF--------G 144 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~-----~~lg~~i~~~l~~G~~ip~~~~~--------~ 144 (277)
+..++|+||+||||||+++.|+..++..++..+..+....... ...++.....+..|... ..+.. .
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~yg~~~ 80 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFA-LSWHANGLYYGVGI 80 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchh-hHHHHhCCccCCcH
Confidence 4579999999999999999999988765544443332211100 01112222222333221 11100 0
Q ss_pred HHHHHHHcCCccCccEEEEcCccCCHHHHHHHHh-hcCcCEEEEecCCHHHHHHhhcc-------hHHHHHHHHHHhchh
Q 023790 145 LLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQ-LAEIDLVVNFKCADNFIVTNRGG-------SLKEKLEAYAELGKP 216 (277)
Q Consensus 145 ll~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~-~~~~d~vI~L~~~~e~l~~Rl~~-------~~~~rl~~y~~~~~~ 216 (277)
-+...+.. +..+|++|. ......+.+ ...+..+|+|++|.+++.+|+.. .+++|++.+
T Consensus 81 ~~~~~l~~-----g~~VI~~G~---~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~~~~~~i~~rl~r~------ 146 (186)
T PRK10078 81 EIDLWLHA-----GFDVLVNGS---RAHLPQARARYQSALLPVCLQVSPEILRQRLENRGRENASEINARLARA------ 146 (186)
T ss_pred HHHHHHhC-----CCEEEEeCh---HHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCCCCHHHHHHHHHHh------
Confidence 12333332 456888876 111122222 23455789999999999999932 233444221
Q ss_pred HHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 217 LEDYYQKQKKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 217 l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
..|.. ...++|+.+.+++++.++|.++|...
T Consensus 147 --~~~~~-ad~~vi~~~~s~ee~~~~i~~~l~~~ 177 (186)
T PRK10078 147 --ARYQP-QDCHTLNNDGSLRQSVDTLLTLLHLS 177 (186)
T ss_pred --hhhcc-CCEEEEeCCCCHHHHHHHHHHHHhhc
Confidence 12332 23456777889999999999998754
No 86
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.18 E-value=2.7e-10 Score=108.40 Aligned_cols=177 Identities=14% Similarity=0.088 Sum_probs=106.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhcccc-----ch---------------
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEV-----VS--------------- 138 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~-----ip--------------- 138 (277)
++|.|+|++||||||+|+.|++ +|+++||+|.+.++.+.+++.....+.+.+..+.+ +.
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~ 80 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR 80 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 5799999999999999999997 89999999999999888776655555555432211 11
Q ss_pred ---HHHHHHHHHHHHHcCC-ccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcch---H-HHHHHHH
Q 023790 139 ---EDIIFGLLSKRLEDGY-YRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS---L-KEKLEAY 210 (277)
Q Consensus 139 ---~~~~~~ll~~~l~~~~-~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~---~-~~rl~~y 210 (277)
+.++...|..++.+.. ...+..+|+.+.|.-.+. .+. ..+|.+|++++|.++.++|+..+ . ..-...+
T Consensus 81 ~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eipLL~E~--~~~--~~~D~iI~V~ap~e~ri~Rl~~rRg~s~~~a~~ri 156 (395)
T PRK03333 81 AVLNGIVHPLVGARRAELIAAAPEDAVVVEDIPLLVES--GMA--PLFHLVVVVDADVEVRVRRLVEQRGMAEADARARI 156 (395)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecC--Cch--hhCCEEEEEECCHHHHHHHHHhcCCCCHHHHHHHH
Confidence 1233334433332210 012345777676643221 111 24689999999999999998431 1 1111122
Q ss_pred HHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHHccccccCCchhhhhhhc
Q 023790 211 AELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHLQHINAAYSSQELMKRSH 266 (277)
Q Consensus 211 ~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~~~~~~~~~~~~~~~~~~ 266 (277)
..+.. ... ..... -+.|+.+.+++++..++.+.++..- .|..++|-++-.
T Consensus 157 ~~Q~~-~e~-k~~~A-D~vIdN~~s~e~l~~~v~~~l~~~~---~~~~~~~~~~~~ 206 (395)
T PRK03333 157 AAQAS-DEQ-RRAVA-DVWLDNSGTPDELVEAVRALWADRL---LPFAHNLRARRR 206 (395)
T ss_pred HhcCC-hHH-HHHhC-CEEEECCCCHHHHHHHHHHHHHHHH---hhHHHHHhcCCC
Confidence 22211 111 11222 2456778899999999998876531 244444444433
No 87
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.15 E-value=2.2e-10 Score=111.75 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=38.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~ 116 (277)
.++++|.|.|++||||||+|+.|++++|+.+++.|+++|..
T Consensus 282 ~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~ 322 (512)
T PRK13477 282 KRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV 322 (512)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence 47799999999999999999999999999999999999874
No 88
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.15 E-value=7.1e-10 Score=90.61 Aligned_cols=155 Identities=13% Similarity=0.077 Sum_probs=92.8
Q ss_pred EcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHH---HHHHHHcCCccCccE
Q 023790 84 IGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGL---LSKRLEDGYYRGEIG 160 (277)
Q Consensus 84 ~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~l---l~~~l~~~~~~~~~g 160 (277)
+|..||||||+++.||+++|+.+|+-|++--.+. | +-|..|.+..++-.... |.+++.+.. ..+..
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aN---------i-~KM~~GiPL~DdDR~pWL~~l~~~~~~~~-~~~~~ 69 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPAN---------I-EKMSAGIPLNDDDRWPWLEALGDAAASLA-QKNKH 69 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHH---------H-HHHhCCCCCCcchhhHHHHHHHHHHHHhh-cCCCc
Confidence 5999999999999999999999999988754321 2 23677877766543333 333343321 22333
Q ss_pred EEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcchHHHHH--HHHHHhchhHHHHHHhcCcEEEEeCCCCHHH
Q 023790 161 FILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLKEKL--EAYAELGKPLEDYYQKQKKLLEFQVGSAPLE 238 (277)
Q Consensus 161 ~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~~~~rl--~~y~~~~~~l~~~y~~~~~li~Ida~~s~ee 238 (277)
.|+-.-.......+.|....+--.+|||+.+.+++.+|+..+-..-+ .....+...++.--. ...++.||.+.++++
T Consensus 70 ~vi~CSALKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~gHFM~~~ll~SQfa~LE~P~~-de~vi~idi~~~~e~ 148 (161)
T COG3265 70 VVIACSALKRSYRDLLREANPGLRFVYLDGDFDLILERMKARKGHFMPASLLDSQFATLEEPGA-DEDVLTIDIDQPPEE 148 (161)
T ss_pred eEEecHHHHHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhcccCCCCHHHHHHHHHHhcCCCC-CCCEEEeeCCCCHHH
Confidence 44443222222334443322223699999999999999943210000 001111111211001 114889999999999
Q ss_pred HHHHHHHHHHHc
Q 023790 239 TWQGLLTALHLQ 250 (277)
Q Consensus 239 v~~~I~~~L~~~ 250 (277)
+.+++.++++..
T Consensus 149 vv~~~~~~l~~~ 160 (161)
T COG3265 149 VVAQALAWLKEG 160 (161)
T ss_pred HHHHHHHHHhcc
Confidence 999999998753
No 89
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.13 E-value=6.5e-10 Score=93.20 Aligned_cols=152 Identities=9% Similarity=0.003 Sum_probs=84.2
Q ss_pred EcCCCCChHHHHHHHHHHhCCCccchhHHH-----HHhcCCCChhHHHHHHHHhccccchH-HHHHHHHHHHHHcCCccC
Q 023790 84 IGSPRAKKHVYAEMLSKLLEVPRISMSSIV-----RQDLSPRSSLHKQIANAVNRGEVVSE-DIIFGLLSKRLEDGYYRG 157 (277)
Q Consensus 84 ~G~pGSGKSTla~~La~~~g~~~Is~~dll-----r~~~~~~~~lg~~i~~~l~~G~~ip~-~~~~~ll~~~l~~~~~~~ 157 (277)
+|++||||||+++.|++.+|..+++.+.+. +.... +.+..... ..+. ..+.......... .
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~-g~~~~~~~--------~~~~~~~~~~~~~~~~~~----~ 67 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMAS-GEPLNDDD--------RKPWLQALNDAAFAMQRT----N 67 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccC-CCCCChhh--------HHHHHHHHHHHHHHHHHc----C
Confidence 599999999999999999999999886542 11110 11110000 0000 0111111111211 2
Q ss_pred ccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcchHH--HHHHHHHHhchhHHHHHHhcCcEEEEeCCCC
Q 023790 158 EIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLK--EKLEAYAELGKPLEDYYQKQKKLLEFQVGSA 235 (277)
Q Consensus 158 ~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~~~--~rl~~y~~~~~~l~~~y~~~~~li~Ida~~s 235 (277)
+.++|+-.+. ...+.+.+.+...+-.+|+|+||++++.+|+..+-. ...+.+..+...+...-.....++.||++.+
T Consensus 68 ~~~viv~s~~-~~~~r~~~~~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~a~~~vl~~Q~~~~ep~~~~e~~~~~id~~~~ 146 (163)
T PRK11545 68 KVSLIVCSAL-KKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQP 146 (163)
T ss_pred CceEEEEecc-hHHHHHHHHccCCCEEEEEEECCHHHHHHHHHhccCCCCCHHHHHHHHHHcCCCCCCCCCEEEEeCCCC
Confidence 3455553332 233334444433445799999999999999954321 1223333332212111011124788999999
Q ss_pred HHHHHHHHHHHHHH
Q 023790 236 PLETWQGLLTALHL 249 (277)
Q Consensus 236 ~eev~~~I~~~L~~ 249 (277)
++++..++...+.+
T Consensus 147 ~~~~~~~~~~~~~~ 160 (163)
T PRK11545 147 LEGVVASTIEVIKK 160 (163)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999864
No 90
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.13 E-value=6.1e-10 Score=91.30 Aligned_cols=112 Identities=14% Similarity=0.089 Sum_probs=67.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccch----HHHHHHHHHHHHHcCCc
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS----EDIIFGLLSKRLEDGYY 155 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip----~~~~~~ll~~~l~~~~~ 155 (277)
.|+|.|+|||||||+|+.|++.++..+++.|++..... ...+..|...+ ..+...+........ .
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ 69 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPAN----------IAKMAAGIPLNDEDRWPWLQALTDALLAKL-A 69 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHH----------HHHHHcCCCCCccchhhHHHHHHHHHHHHH-H
Confidence 37899999999999999999999999999877654311 00111111111 111111111111110 0
Q ss_pred cCccEEEEcCccCCHHHHHHHHhhc--CcCEEEEecCCHHHHHHhhcch
Q 023790 156 RGEIGFILDGLPRSRIQAEILDQLA--EIDLVVNFKCADNFIVTNRGGS 202 (277)
Q Consensus 156 ~~~~g~IldGfPrt~~qae~l~~~~--~~d~vI~L~~~~e~l~~Rl~~~ 202 (277)
..+.++|+|.........+.+.... ..-.+|+|++|.+++.+|+..+
T Consensus 70 ~~~~~vVid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R 118 (150)
T cd02021 70 SAGEGVVVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAAR 118 (150)
T ss_pred hCCCCEEEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhc
Confidence 1345688885433444445555442 3446999999999999999543
No 91
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.13 E-value=5e-11 Score=94.01 Aligned_cols=106 Identities=25% Similarity=0.245 Sum_probs=59.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCC-ccCc
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY-YRGE 158 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~-~~~~ 158 (277)
+|+|.|+|||||||+|+.|++++|++++++|++++..... + ...+.........+.+...+.... ....
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 70 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWI--E--------RDDDEREYIDADIDLLDDILEQLQNKPDN 70 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHC--H--------GCTTCCHHHHHHHHHHHHHHHHHHETTT-
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEecccc--c--------cCcchhhHHHHHHHHHHHHHHhhhccCCC
Confidence 5899999999999999999999999999999954322100 0 001111001111222222222110 0246
Q ss_pred cEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhh
Q 023790 159 IGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR 199 (277)
Q Consensus 159 ~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl 199 (277)
..||+||.-. .. . .+ .....+.+|+++++.+.+.+|.
T Consensus 71 ~~~ii~g~~~-~~-~-~~-~~~~~~~~i~l~~~~~~~~~~~ 107 (121)
T PF13207_consen 71 DNWIIDGSYE-SE-M-EI-RLPEFDHVIYLDAPDEECRERR 107 (121)
T ss_dssp -EEEEECCSC-HC-C-HS-CCHHGGCEEEEEEEEHHHHHHH
T ss_pred CeEEEeCCCc-cc-h-hh-hhhcCCEEEEEECCCHHHHHHH
Confidence 7899999311 10 0 11 1123468999999998544443
No 92
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.11 E-value=1e-09 Score=93.68 Aligned_cols=117 Identities=17% Similarity=0.213 Sum_probs=77.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhcccc-----ch---------------
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEV-----VS--------------- 138 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~-----ip--------------- 138 (277)
|.|.|+|+.||||||+++.|++ +|+++|++|.+.++.+.++++....+.+.+...-+ +.
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 5799999999999999999999 99999999999999998888888888776643221 11
Q ss_pred ---HHHHHHHHHHHHHcCC--ccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcc
Q 023790 139 ---EDIIFGLLSKRLEDGY--YRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG 201 (277)
Q Consensus 139 ---~~~~~~ll~~~l~~~~--~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~ 201 (277)
+.++..++...+.... .....-+|+| .|.-.+. .+. ..+|.+|++.||.++.++|+.+
T Consensus 80 ~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e-~pLL~E~--~~~--~~~D~vi~V~a~~e~ri~Rl~~ 142 (180)
T PF01121_consen 80 KKLENIIHPLIREEIEKFIKRNKSEKVVVVE-IPLLFES--GLE--KLCDEVIVVYAPEEIRIKRLME 142 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE--TTTTTT--TGG--GGSSEEEEEE--HHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhccCCCEEEEE-cchhhhh--hHh--hhhceEEEEECCHHHHHHHHHh
Confidence 1334444444433211 1122455565 4432110 111 2589999999999999999943
No 93
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.11 E-value=2.9e-09 Score=92.18 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=37.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~ 116 (277)
..++|.|-||.||||||+|+.||++||+.|+++|.++|..
T Consensus 3 ~~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~ 42 (222)
T COG0283 3 AAIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAV 42 (222)
T ss_pred CceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHH
Confidence 3488999999999999999999999999999999999875
No 94
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.10 E-value=1.2e-09 Score=89.97 Aligned_cols=155 Identities=13% Similarity=0.122 Sum_probs=97.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHH---HHHHcC
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLS---KRLEDG 153 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~---~~l~~~ 153 (277)
.+-.|+++|+.||||||+++.|++++++.+++.||+--.+. .+-|.+|....++-....|. ..+...
T Consensus 11 ~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~N----------veKM~~GipLnD~DR~pWL~~i~~~~~~~ 80 (191)
T KOG3354|consen 11 FKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPAN----------VEKMTQGIPLNDDDRWPWLKKIAVELRKA 80 (191)
T ss_pred CceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHH----------HHHHhcCCCCCcccccHHHHHHHHHHHHH
Confidence 44579999999999999999999999999999988754331 23456676665433322222 111111
Q ss_pred CccCccEEEEcCccCCHHHHHHHHhhc-------Cc---CEEEEecCCHHHHHHhhcch---------HHHHHHHHHHhc
Q 023790 154 YYRGEIGFILDGLPRSRIQAEILDQLA-------EI---DLVVNFKCADNFIVTNRGGS---------LKEKLEAYAELG 214 (277)
Q Consensus 154 ~~~~~~g~IldGfPrt~~qae~l~~~~-------~~---d~vI~L~~~~e~l~~Rl~~~---------~~~rl~~y~~~~ 214 (277)
...++++|+-.-.......+.|.+.. .+ -.+|+|.++.|++.+|+..+ ++..++..+
T Consensus 81 -l~~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHFMp~~lleSQf~~LE--- 156 (191)
T KOG3354|consen 81 -LASGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHFMPADLLESQFATLE--- 156 (191)
T ss_pred -hhcCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccccCCHHHHHHHHHhcc---
Confidence 12468888875433333445554321 11 26999999999999999332 222222211
Q ss_pred hhHHHHHHhcCcEEEEeCC-CCHHHHHHHHHHHHHH
Q 023790 215 KPLEDYYQKQKKLLEFQVG-SAPLETWQGLLTALHL 249 (277)
Q Consensus 215 ~~l~~~y~~~~~li~Ida~-~s~eev~~~I~~~L~~ 249 (277)
.|- .+...++.|+.. .+++++...|.+.+..
T Consensus 157 ~p~----~~e~div~isv~~~~~e~iv~tI~k~~~~ 188 (191)
T KOG3354|consen 157 APD----ADEEDIVTISVKTYSVEEIVDTIVKMVAL 188 (191)
T ss_pred CCC----CCccceEEEeeccCCHHHHHHHHHHHHHh
Confidence 111 011247788875 9999999999887754
No 95
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.10 E-value=1.2e-09 Score=108.17 Aligned_cols=161 Identities=16% Similarity=0.127 Sum_probs=91.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCC------CccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHH--HH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV------PRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGL--LS 147 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~------~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~l--l~ 147 (277)
+++..|+|+|.|||||||+|+.|+++++. .+++. |.+++.+..+......-++ .+...+ +.
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~-D~vr~~l~ge~~f~~~er~----------~~~~~l~~~a 458 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDG-DVVRKHLSSELGFSKEDRD----------LNILRIGFVA 458 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCC-cHHHHhccCCCCCCHHHHH----------HHHHHHHHHH
Confidence 56788999999999999999999999986 77777 4556654322111110000 011111 11
Q ss_pred HHHHcCCccCccEEEEcC-ccCCHHHHHHHHhhcC-cC-EEEEecCCHHHHHHhhcchH--HHHHHHHHHhchhHHHHHH
Q 023790 148 KRLEDGYYRGEIGFILDG-LPRSRIQAEILDQLAE-ID-LVVNFKCADNFIVTNRGGSL--KEKLEAYAELGKPLEDYYQ 222 (277)
Q Consensus 148 ~~l~~~~~~~~~g~IldG-fPrt~~qae~l~~~~~-~d-~vI~L~~~~e~l~~Rl~~~~--~~rl~~y~~~~~~l~~~y~ 222 (277)
..+. ..+.++|+|. +|......+..+.+.. -. .+|||++|.+++.+|....+ +.+....+........+|.
T Consensus 459 ~~v~----~~Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~rr~Ll~~~~~~~i~~l~~~R~~yy~ 534 (568)
T PRK05537 459 SEIT----KNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDRKGLYAKAREGKIKGFTGISDPYEP 534 (568)
T ss_pred HHHH----hCCCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhccccccccchhchhhccccccccccC
Confidence 1111 2367788874 4443222222221111 12 58999999999999984321 1112222222222234553
Q ss_pred hcCcEEEEeCC-CCHHHHHHHHHHHHHHcc
Q 023790 223 KQKKLLEFQVG-SAPLETWQGLLTALHLQH 251 (277)
Q Consensus 223 ~~~~li~Ida~-~s~eev~~~I~~~L~~~~ 251 (277)
...--++||++ .+++++.++|.+.|..++
T Consensus 535 p~~Adl~IDt~~~s~~eiv~~Il~~L~~~g 564 (568)
T PRK05537 535 PANPELVIDTTNVTPDECAHKILLYLEEKG 564 (568)
T ss_pred CCCCcEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 12223567765 689999999999998764
No 96
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.09 E-value=2.2e-09 Score=90.43 Aligned_cols=161 Identities=17% Similarity=0.100 Sum_probs=85.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC-----CCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHH--HHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII--FGLLSK 148 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g-----~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~--~~ll~~ 148 (277)
.++..|+|+|+|||||||+|+.|++.+. +.+++.|.+ ++.+..+......-+ .... ...+..
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~-~~~~~~~~~~~~~~r----------~~~~~~~~~~a~ 70 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV-RTNLSKGLGFSKEDR----------DTNIRRIGFVAN 70 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH-HHHHhcCCCCChhhH----------HHHHHHHHHHHH
Confidence 3677899999999999999999999872 566777544 433221110000000 0010 011222
Q ss_pred HHHcCCccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcchHHHHH--HHHHHhchhHHHHHHhc-C
Q 023790 149 RLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLKEKL--EAYAELGKPLEDYYQKQ-K 225 (277)
Q Consensus 149 ~l~~~~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~~~~rl--~~y~~~~~~l~~~y~~~-~ 225 (277)
.+.. .+..+|+|+.-......+.+......-.+|+|+||.+++.+|..+.+-++. +...........+|... .
T Consensus 71 ~~~~----~g~~vi~~~~~~~~~~~~~l~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~i~~~~~~~~~~~~p~~a 146 (175)
T PRK00889 71 LLTR----HGVIVLVSAISPYRETREEVRANIGNFLEVFVDAPLEVCEQRDVKGLYAKARAGEIKHFTGIDDPYEPPLNP 146 (175)
T ss_pred HHHh----CCCEEEEecCCCCHHHHHHHHhhcCCeEEEEEcCCHHHHHHhCcccHHHHHHcCCCCCCcccCCCCCCCCCC
Confidence 2221 244567776422223334444433334699999999999999632221111 00111111122334321 1
Q ss_pred cEEEEeCCCCHHHHHHHHHHHHHHcc
Q 023790 226 KLLEFQVGSAPLETWQGLLTALHLQH 251 (277)
Q Consensus 226 ~li~Ida~~s~eev~~~I~~~L~~~~ 251 (277)
-+...+.+.+++++.++|.+.|...+
T Consensus 147 d~~i~~~~~~~~~~~~~i~~~l~~~~ 172 (175)
T PRK00889 147 EVECRTDLESLEESVDKVLQKLEELG 172 (175)
T ss_pred cEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 23333346789999999999997643
No 97
>PRK06547 hypothetical protein; Provisional
Probab=99.08 E-value=3.3e-10 Score=95.97 Aligned_cols=141 Identities=11% Similarity=0.032 Sum_probs=79.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHH-hccccchHHHHHHHHHHHHHcC-
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV-NRGEVVSEDIIFGLLSKRLEDG- 153 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l-~~G~~ip~~~~~~ll~~~l~~~- 153 (277)
.++++|.|.|++||||||+|+.|++.+++.++++|++....-. .....+.+.+.+ ..|+...-. ...........
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~-~~~~~~~l~~~~l~~g~~~~~~--yd~~~~~~~~~~ 89 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHG-LAAASEHVAEAVLDEGRPGRWR--WDWANNRPGDWV 89 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceeccccc-CChHHHHHHHHHHhCCCCceec--CCCCCCCCCCcE
Confidence 5778899999999999999999999999999999988753211 011112222222 223221000 00000000000
Q ss_pred CccCccEEEEcCccCCHHH-HHHHHhhcCcCEEEEecCCHHHHHHhhcchHHHHHHHHHHhchhHHHHH
Q 023790 154 YYRGEIGFILDGLPRSRIQ-AEILDQLAEIDLVVNFKCADNFIVTNRGGSLKEKLEAYAELGKPLEDYY 221 (277)
Q Consensus 154 ~~~~~~g~IldGfPrt~~q-ae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~~~~rl~~y~~~~~~l~~~y 221 (277)
.......+|++|.-....+ .+.+++ ...-++|++++|.+++.+|...+-.. ...|...+.+.++.|
T Consensus 90 ~l~~~~vVIvEG~~al~~~~r~~~d~-~g~v~~I~ld~~~~vr~~R~~~Rd~~-~~~~~~~w~~~e~~~ 156 (172)
T PRK06547 90 SVEPGRRLIIEGVGSLTAANVALASL-LGEVLTVWLDGPEALRKERALARDPD-YAPHWEMWAAQEERH 156 (172)
T ss_pred EeCCCCeEEEEehhhccHHHHHHhcc-CCCEEEEEEECCHHHHHHHHHhcCch-hhHHHHHHHHHHHHH
Confidence 0112456888986322211 122221 12238999999999999998544222 555666666666655
No 98
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.08 E-value=4.5e-09 Score=88.71 Aligned_cols=155 Identities=14% Similarity=0.104 Sum_probs=82.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCc-cch--hHHHHHhcCCCChh----HHHHHHHHhccccc--hHH-----HHHH
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPR-ISM--SSIVRQDLSPRSSL----HKQIANAVNRGEVV--SED-----IIFG 144 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~-Is~--~dllr~~~~~~~~l----g~~i~~~l~~G~~i--p~~-----~~~~ 144 (277)
..|+|+|+|||||||+++.|+..++... +.. ...-+.....+..+ ..........+... ... -...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA 81 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH
Confidence 4789999999999999999999875321 110 00001100011111 11122222222221 000 0011
Q ss_pred HHHHHHHcCCccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcc-------hHHHHHHHHHHhchhH
Q 023790 145 LLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG-------SLKEKLEAYAELGKPL 217 (277)
Q Consensus 145 ll~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~-------~~~~rl~~y~~~~~~l 217 (277)
.+...+.. +..+|++|... ....+.+......+|+|++|.+++.+|+.. .+.+|+..+.
T Consensus 82 ~i~~~~~~-----g~~vv~~g~~~---~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~------ 147 (179)
T TIGR02322 82 EIDQWLEA-----GDVVVVNGSRA---VLPEARQRYPNLLVVNITASPDVLAQRLAARGRESREEIEERLARSA------ 147 (179)
T ss_pred HHHHHHhc-----CCEEEEECCHH---HHHHHHHHCCCcEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHHh------
Confidence 12222332 45688888632 122222222345799999999999999943 2334443211
Q ss_pred HHHHH-hcCcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 218 EDYYQ-KQKKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 218 ~~~y~-~~~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
.|. ....++.++++.+++++.++|.+.+..
T Consensus 148 --~~~~~~~~~~vi~~~~~~ee~~~~i~~~l~~ 178 (179)
T TIGR02322 148 --RFAAAPADVTTIDNSGSLEVAGETLLRLLRK 178 (179)
T ss_pred --hcccccCCEEEEeCCCCHHHHHHHHHHHHcc
Confidence 121 222356677788999999999998853
No 99
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.08 E-value=1.7e-09 Score=94.97 Aligned_cols=39 Identities=18% Similarity=0.159 Sum_probs=36.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHh
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~ 116 (277)
++.|.|.||+||||||+++.|++++|+.+++.|+++|..
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~ 40 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI 40 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence 478999999999999999999999999999999988754
No 100
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.07 E-value=5.9e-10 Score=96.87 Aligned_cols=165 Identities=8% Similarity=0.022 Sum_probs=88.6
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh-CCCc-cchhHHH-HHhcCCCChh----HHHHHHHHhccccchH----H---
Q 023790 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL-EVPR-ISMSSIV-RQDLSPRSSL----HKQIANAVNRGEVVSE----D--- 140 (277)
Q Consensus 75 ~~~~~~Ivi~G~pGSGKSTla~~La~~~-g~~~-Is~~dll-r~~~~~~~~l----g~~i~~~l~~G~~ip~----~--- 140 (277)
|.++..|+|+||+||||||+++.|.+.. .+.+ ++..... |.....+... .......+.+|..+.- .
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~Y 89 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNYY 89 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCcee
Confidence 4688999999999999999999998652 1211 0000000 0000001000 1122223333433210 0
Q ss_pred -HHHHHHHHHHHcCCccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCC--HHHHHHhhcc-------hHHHHHHHH
Q 023790 141 -IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCA--DNFIVTNRGG-------SLKEKLEAY 210 (277)
Q Consensus 141 -~~~~ll~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~--~e~l~~Rl~~-------~~~~rl~~y 210 (277)
+....+...+.+ +..+|++.-+ ..+..+.+. .||.++++.+| .+++.+|+.. .+.+|+..+
T Consensus 90 Gt~~~~i~~~~~~-----g~~vi~~~~~---~g~~~l~~~-~pd~~~if~~pps~e~l~~Rl~~R~~~~~~~~~~Rl~~~ 160 (206)
T PRK14738 90 GVPKAPVRQALAS-----GRDVIVKVDV---QGAASIKRL-VPEAVFIFLAPPSMDELTRRLELRRTESPEELERRLATA 160 (206)
T ss_pred cCCHHHHHHHHHc-----CCcEEEEcCH---HHHHHHHHh-CCCeEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 011233333333 3557777543 223444432 47877777765 5578999832 344555544
Q ss_pred HHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHHcccc
Q 023790 211 AELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHLQHIN 253 (277)
Q Consensus 211 ~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~~~~~ 253 (277)
....... ....++.||++.++++++++|.++|....+.
T Consensus 161 ~~e~~~~-----~~~~~~iId~~~~~e~v~~~i~~~l~~~~~~ 198 (206)
T PRK14738 161 PLELEQL-----PEFDYVVVNPEDRLDEAVAQIMAIISAEKSR 198 (206)
T ss_pred HHHHhcc-----cCCCEEEECCCCCHHHHHHHHHHHHHHHhcc
Confidence 3322111 1124778999899999999999999876543
No 101
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.07 E-value=5.4e-10 Score=95.29 Aligned_cols=158 Identities=11% Similarity=0.045 Sum_probs=94.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh----CCCccchhHHHHHhcCCCChh----HHHHHHHHhccccchHH--------H
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLL----EVPRISMSSIVRQDLSPRSSL----HKQIANAVNRGEVVSED--------I 141 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~----g~~~Is~~dllr~~~~~~~~l----g~~i~~~l~~G~~ip~~--------~ 141 (277)
+..|+|+||+||||+|+++.|.+.+ ...+..+..-.|.-...+.+. .+.+.+.+.+|+.++.. +
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt 81 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT 81 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence 4579999999999999999999985 233333322222211122222 25566666777665421 2
Q ss_pred HHHHHHHHHHcCCccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEec-CCHHHHHHhhc-------chHHHHHHHHHHh
Q 023790 142 IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFK-CADNFIVTNRG-------GSLKEKLEAYAEL 213 (277)
Q Consensus 142 ~~~ll~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~-~~~e~l~~Rl~-------~~~~~rl~~y~~~ 213 (277)
..+.+...+.. ++.+|+|+.|....+.... .....+|++. .+.+.+.+|+. +.+++|+......
T Consensus 82 ~~~~i~~~~~~-----~~~~ild~~~~~~~~l~~~---~~~~~vIfi~~~s~~~l~~rl~~R~~~~~~~i~~rl~~a~~~ 153 (184)
T smart00072 82 SKETIRQVAEQ-----GKHCLLDIDPQGVKQLRKA---QLYPIVIFIAPPSSEELERRLRGRGTETAERIQKRLAAAQKE 153 (184)
T ss_pred CHHHHHHHHHc-----CCeEEEEECHHHHHHHHHh---CCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 23345555543 5789999988776665443 2223799998 55567888883 2456677643332
Q ss_pred chhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 214 GKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 214 ~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
. ..+...+ ..|. +.+.++..+++.+++...
T Consensus 154 ~----~~~~~fd--~~I~-n~~l~~~~~~l~~~i~~~ 183 (184)
T smart00072 154 A----QEYHLFD--YVIV-NDDLEDAYEELKEILEAE 183 (184)
T ss_pred H----hhhccCC--EEEE-CcCHHHHHHHHHHHHHhc
Confidence 2 2222222 2333 237999999999988653
No 102
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.06 E-value=4.7e-10 Score=90.98 Aligned_cols=102 Identities=17% Similarity=0.230 Sum_probs=62.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCccCcc
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEI 159 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~~ 159 (277)
+|+|.|+|||||||+|+.|++++|+++++.+.+-.+.. ........ . ...-++.+.+.+.. +. ...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~------~~~~~~~~-~-~~~i~~~l~~~~~~-~~-----~~~ 66 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEV------GKLASEVA-A-IPEVRKALDERQRE-LA-----KKP 66 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHH------HHHHHHhc-c-cHhHHHHHHHHHHH-Hh-----hCC
Confidence 48999999999999999999999999999974322211 11111000 0 00011122222222 21 235
Q ss_pred EEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcc
Q 023790 160 GFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG 201 (277)
Q Consensus 160 g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~ 201 (277)
+||+||...... + ....+++|+|++|++...+|+..
T Consensus 67 ~~Vidg~~~~~~----~--~~~~~~~i~l~~~~~~r~~R~~~ 102 (147)
T cd02020 67 GIVLEGRDIGTV----V--FPDADLKIFLTASPEVRAKRRAK 102 (147)
T ss_pred CEEEEeeeeeeE----E--cCCCCEEEEEECCHHHHHHHHHH
Confidence 799998632110 0 12468999999999999999843
No 103
>PRK00023 cmk cytidylate kinase; Provisional
Probab=99.04 E-value=8e-09 Score=91.09 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=36.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQ 115 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~ 115 (277)
.+++|.|.|++||||||+|+.|++++|+.+++.|+++|.
T Consensus 3 ~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~ 41 (225)
T PRK00023 3 KAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA 41 (225)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence 457899999999999999999999999999999998876
No 104
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=99.01 E-value=8.9e-09 Score=87.96 Aligned_cols=28 Identities=21% Similarity=0.128 Sum_probs=24.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCCcc
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~g~~~I 107 (277)
.|+|.|++||||||+++.|++++|+.++
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~ 28 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVV 28 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCccc
Confidence 4899999999999999999999877544
No 105
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=99.00 E-value=1.4e-08 Score=86.99 Aligned_cols=160 Identities=16% Similarity=0.212 Sum_probs=104.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchH-------------------
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSE------------------- 139 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~------------------- 139 (277)
.+|-+.|+.||||||+++.+. .+|++.||.|.+.|+...++++-++.+.+.+...-+.++
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r 80 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKR 80 (225)
T ss_pred eEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHH
Confidence 467899999999999999998 899999999999999999999999999888754422221
Q ss_pred ----HHHHHHHHHHHHc----CCccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcc-------hHH
Q 023790 140 ----DIIFGLLSKRLED----GYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG-------SLK 204 (277)
Q Consensus 140 ----~~~~~ll~~~l~~----~~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~-------~~~ 204 (277)
.++...+..++.+ ....+..-+|+| .|.-.+- .+++ -+..+|...||.++-++|+.+ ..+
T Consensus 81 ~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlD-iPLLFE~--~~~~--~~~~tvvV~cd~~~Ql~Rl~~Rd~lse~dAe 155 (225)
T KOG3220|consen 81 QALNKITHPAIRKEMFKEILKLLLRGYRVIVLD-IPLLFEA--KLLK--ICHKTVVVTCDEELQLERLVERDELSEEDAE 155 (225)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEe-chHHHHH--hHHh--heeeEEEEEECcHHHHHHHHHhccccHHHHH
Confidence 1122222222221 112233444555 6643321 2333 245688888999999999932 233
Q ss_pred HHHHHHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 205 EKLEAYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 205 ~rl~~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
.|+.. + -|+.+..+.. -+++|.+.+++++.+++..++...
T Consensus 156 ~Rl~s---Q-mp~~~k~~~a--~~Vi~Nng~~~~l~~qv~~v~~~~ 195 (225)
T KOG3220|consen 156 NRLQS---Q-MPLEKKCELA--DVVIDNNGSLEDLYEQVEKVLALL 195 (225)
T ss_pred HHHHh---c-CCHHHHHHhh--heeecCCCChHHHHHHHHHHHHHh
Confidence 44421 1 2444433332 356788999999999999887653
No 106
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.95 E-value=3.1e-08 Score=85.35 Aligned_cols=170 Identities=11% Similarity=0.068 Sum_probs=91.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCC---CCh----hHHHHHHHHhccccch-----HHH--
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP---RSS----LHKQIANAVNRGEVVS-----EDI-- 141 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~---~~~----lg~~i~~~l~~G~~ip-----~~~-- 141 (277)
..+..|+|+|++||||||+++.|++.++..++.....-|+.... +.+ ..+.+...+..|..+. ...
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 82 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYG 82 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCcccc
Confidence 36678999999999999999999998753222222111111000 000 0122333333333221 000
Q ss_pred -HHHHHHHHHHcCCccCccEEEEcCccCCHHHHHHHHhh-cCcCEEEEecCCHHHHHHhhc-------chHHHHHHHHHH
Q 023790 142 -IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNRG-------GSLKEKLEAYAE 212 (277)
Q Consensus 142 -~~~ll~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~~-~~~d~vI~L~~~~e~l~~Rl~-------~~~~~rl~~y~~ 212 (277)
....+...+.. +..+|+|.-+... ..+.+. ..+-.|+++.++.+++.+|+. +.+++|+..+..
T Consensus 83 ~~~~~i~~~l~~-----g~~vi~dl~~~g~---~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~~~~~~~i~~rl~~~~~ 154 (205)
T PRK00300 83 TPRSPVEEALAA-----GKDVLLEIDWQGA---RQVKKKMPDAVSIFILPPSLEELERRLRGRGTDSEEVIARRLAKARE 154 (205)
T ss_pred CcHHHHHHHHHc-----CCeEEEeCCHHHH---HHHHHhCCCcEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 12223333332 3556777654322 223222 222235555677889999983 356677776665
Q ss_pred hchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHHccccccCCchh
Q 023790 213 LGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHLQHINAAYSSQE 260 (277)
Q Consensus 213 ~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~~~~~~~~~~~~ 260 (277)
... ++...+.++ + +.+++++.+++..++....+.++.+-++
T Consensus 155 ~~~----~~~~~d~vi-~--n~~~e~~~~~l~~il~~~~~~~~~~~~~ 195 (205)
T PRK00300 155 EIA----HASEYDYVI-V--NDDLDTALEELKAIIRAERLRRSRQQQR 195 (205)
T ss_pred HHH----hHHhCCEEE-E--CCCHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 432 233334343 3 3489999999999999875544444433
No 107
>PRK12338 hypothetical protein; Provisional
Probab=98.95 E-value=2.9e-08 Score=91.52 Aligned_cols=173 Identities=12% Similarity=0.064 Sum_probs=97.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCC--Chh----HHHHH---HHHhcccc-ch-------
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPR--SSL----HKQIA---NAVNRGEV-VS------- 138 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~--~~l----g~~i~---~~l~~G~~-ip------- 138 (277)
++|..|+|.|+|||||||+|+.||+++|+.++..+|.+|+.+..- .++ ....- ..+...+. .+
T Consensus 2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~~ 81 (319)
T PRK12338 2 RKPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELICA 81 (319)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHHH
Confidence 467889999999999999999999999999997778888875531 111 10000 00111110 01
Q ss_pred -----HHHHHHHHHHHHHcCCccCccEEEEcCccCCHHHHHHHHh-hcCcCEEEEecCCHHHHHHhhcchHH-----HHH
Q 023790 139 -----EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQ-LAEIDLVVNFKCADNFIVTNRGGSLK-----EKL 207 (277)
Q Consensus 139 -----~~~~~~ll~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~-~~~~d~vI~L~~~~e~l~~Rl~~~~~-----~rl 207 (277)
.+++...|..-+... ...+..+|++|.-........... ...+-.+++|..+++...+|...+.+ .+.
T Consensus 82 gf~~q~~~V~~~i~~vi~r~-~~~g~svIiEGvhl~P~~i~~~~~~~~~~v~~~vl~~dee~h~~Rf~~R~~~~~r~~~~ 160 (319)
T PRK12338 82 GFEEHASFVIPAIEKVIERA-VTDSDDIVIEGVHLVPGLIDIEQFEENASIHFFILSADEEVHKERFVKRAMEIKRGGKQ 160 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcCCCeEEEEeccccHHHHhhhhhcccCceEEEEEECCHHHHHHHHHHhhhccCCchhh
Confidence 122333332223321 134678999997543332221110 01123466666888899999844221 122
Q ss_pred HHHHHhchhHHHHHHhc---CcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 208 EAYAELGKPLEDYYQKQ---KKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 208 ~~y~~~~~~l~~~y~~~---~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
..|.+....+.+++.+. ..+..++ +.+.++..+.|.+.+.+.
T Consensus 161 l~~f~~Ir~Iq~~l~~~A~e~~VpvI~-N~did~Tv~~ile~I~e~ 205 (319)
T PRK12338 161 LEYFRENRIIHDHLVEQAREHNVPVIK-NDDIDCTVKKMLSYIREV 205 (319)
T ss_pred hhChHHHHHHHHHHHHhHhhCCCceeC-CCcHHHHHHHHHHHHHhh
Confidence 22223333444544332 1234454 788999999999998864
No 108
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.92 E-value=2.4e-08 Score=86.54 Aligned_cols=167 Identities=13% Similarity=0.133 Sum_probs=86.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC---CCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHc
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE---VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLED 152 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g---~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~ 152 (277)
.++.+|.|.|++||||||+++.|++.++ +.+++.|+.+..... .+...............+.+.+.+.+......
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 81 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSH--LSFEERVKTNYDHPDAFDHDLLIEHLKALKAG 81 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCccc--CCHHHhcccCccCcccccHHHHHHHHHHHHcC
Confidence 5788999999999999999999999983 445677765542210 00000000000000111112222222221111
Q ss_pred CC-------------------ccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcch--------HHH
Q 023790 153 GY-------------------YRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS--------LKE 205 (277)
Q Consensus 153 ~~-------------------~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~--------~~~ 205 (277)
.. .....-+|+||...-.. ..+. ..+|.+|++++|.+++++|...+ ..+
T Consensus 82 ~~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~--~~~~--~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~ 157 (209)
T PRK05480 82 KAIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLED--ERLR--DLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLES 157 (209)
T ss_pred CccccCcccccccccCCCeEEeCCCCEEEEEeehhcCc--hhHh--hhhceeEEEeCChhHHHHHHHhhcchhcCCCHHH
Confidence 00 01233577788643110 1111 24689999999999999986221 122
Q ss_pred HHHHHHHhchhHHHHH-Hh--cCcEEEEeCC----CCHHHHHHHHHHHHH
Q 023790 206 KLEAYAELGKPLEDYY-QK--QKKLLEFQVG----SAPLETWQGLLTALH 248 (277)
Q Consensus 206 rl~~y~~~~~~l~~~y-~~--~~~li~Ida~----~s~eev~~~I~~~L~ 248 (277)
-.+.|..+..+....| .. ...-+.|+.+ ++.+++.++|...+.
T Consensus 158 ~~~~~~~~~~~~~~~~i~~~~~~AD~vI~~~~~~~~~~~~l~~~i~~~~~ 207 (209)
T PRK05480 158 VINQYLSTVRPMHLQFIEPSKRYADIIIPEGGKNRVAIDILKAKIRQLLE 207 (209)
T ss_pred HHHHHHHhhhhhHHhhccHhhcceeEEecCCCcchHHHHHHHHHHHHHhh
Confidence 2344555544422222 11 1122344433 378888888887664
No 109
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.92 E-value=3.5e-08 Score=90.09 Aligned_cols=142 Identities=14% Similarity=0.059 Sum_probs=79.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCcc
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (277)
.+..|+|.|++||||||+++.|+ ..|+..++- .|..++.+++........ .
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~---------------------------~~~~L~~~l~~~~~~~~~-~ 55 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALE-DLGYYCVDN---------------------------LPPSLLPKLVELLAQSGG-I 55 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHH-HcCCeEECC---------------------------cCHHHHHHHHHHHHhcCC-C
Confidence 44679999999999999999996 457665432 111222223222111100 1
Q ss_pred CccEEEEcCccCCH--HHHHHHHhh---cCcCEEEEecCCHHHHHHhhcchH--------HHHHHHHHHhchhHHHHHHh
Q 023790 157 GEIGFILDGLPRSR--IQAEILDQL---AEIDLVVNFKCADNFIVTNRGGSL--------KEKLEAYAELGKPLEDYYQK 223 (277)
Q Consensus 157 ~~~g~IldGfPrt~--~qae~l~~~---~~~d~vI~L~~~~e~l~~Rl~~~~--------~~rl~~y~~~~~~l~~~y~~ 223 (277)
..-.+++|-..... ...+.+..+ ...-.+|||+++++++.+|+.+.- ....+...+....+..+++.
T Consensus 56 ~~~av~iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~~~l~e~I~~eR~~l~pl~~~ 135 (288)
T PRK05416 56 RKVAVVIDVRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSETRRRHPLSGDGSLLEGIELERELLAPLRER 135 (288)
T ss_pred CCeEEEEccCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhcccCCCccCCccHHHHHHHHHhhhhhHHHh
Confidence 23356677432211 111222222 222368999999999999984311 11122233333444445543
Q ss_pred cCcEEEEeC-CCCHHHHHHHHHHHHHH
Q 023790 224 QKKLLEFQV-GSAPLETWQGLLTALHL 249 (277)
Q Consensus 224 ~~~li~Ida-~~s~eev~~~I~~~L~~ 249 (277)
.+ +.||+ +.+++++.++|.+.+..
T Consensus 136 AD--ivIDTs~ls~~el~e~I~~~l~~ 160 (288)
T PRK05416 136 AD--LVIDTSELSVHQLRERIRERFGG 160 (288)
T ss_pred CC--EEEECCCCCHHHHHHHHHHHHhc
Confidence 33 34565 57999999999998843
No 110
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.89 E-value=1.5e-08 Score=104.46 Aligned_cols=44 Identities=18% Similarity=0.108 Sum_probs=39.8
Q ss_pred ccCCCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHh
Q 023790 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (277)
Q Consensus 73 ~~~~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~ 116 (277)
|-|+.+++|.|.|||||||||+|+.||+++|+.++++|.++|..
T Consensus 29 ~~~m~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~ 72 (863)
T PRK12269 29 CRPMGTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAF 72 (863)
T ss_pred ecccCceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence 34566679999999999999999999999999999999999875
No 111
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.88 E-value=2.8e-08 Score=100.51 Aligned_cols=166 Identities=17% Similarity=0.096 Sum_probs=92.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHh----cCCCChhH--HHHHHHH-------------hcccc
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD----LSPRSSLH--KQIANAV-------------NRGEV 136 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~----~~~~~~lg--~~i~~~l-------------~~G~~ 136 (277)
.+.++|.|.||+||||||+|+.||+++|++|+++|+++|.. +..+.++. ..+.+.+ -+|+.
T Consensus 440 ~~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (661)
T PRK11860 440 DRVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALDDEAAIAALARGLPVRFEGDRIWLGGED 519 (661)
T ss_pred cCcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHhcCCeeecCCeEEECCeE
Confidence 34678999999999999999999999999999999999875 22221111 1111111 11222
Q ss_pred chHH-----------------HHHHHHHHHHHcCCccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhh
Q 023790 137 VSED-----------------IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR 199 (277)
Q Consensus 137 ip~~-----------------~~~~ll~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl 199 (277)
+..+ .+.+.+.+...+. ....++|+||-=-.. .-+...++-|||+++.++..+|.
T Consensus 520 ~~~~i~~~~v~~~~s~~a~~~~vr~~l~~~qr~~--~~~~~~v~eGRdigt------vv~p~a~~kifl~a~~~~Ra~Rr 591 (661)
T PRK11860 520 VTDAIRTEAAGMGASRVSALPAVRAALLALQRSF--RRLPGLVADGRDMGT------VIFPDAALKVFLTASAEARAERR 591 (661)
T ss_pred chhhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHH--hhCCCEEEECCCCcc------EECCCCCeEEEEECChhHHHHHH
Confidence 2111 1112222222221 123468888731000 00124679999999999999987
Q ss_pred cchHHHHH--HHHHHhchhH--HHHHH---h------cCcEEEEeC-CCCHHHHHHHHHHHHHH
Q 023790 200 GGSLKEKL--EAYAELGKPL--EDYYQ---K------QKKLLEFQV-GSAPLETWQGLLTALHL 249 (277)
Q Consensus 200 ~~~~~~rl--~~y~~~~~~l--~~~y~---~------~~~li~Ida-~~s~eev~~~I~~~L~~ 249 (277)
-++++++- ..|++..+.+ +|.-+ . ..--+.||+ ..+++||++.|.+.++.
T Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~Rd~~d~~R~~~pl~~~~da~~idts~~~~~~v~~~i~~~i~~ 655 (661)
T PRK11860 592 YKQLISKGISANIADLLADLEARDARDTQRSVAPLKPAQDALLLDNSDLTIEQAVAQVLDWWQE 655 (661)
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHhHHhhcCCCCCCccCCCEEEEECCCCCHHHHHHHHHHHHHh
Confidence 32221110 0111111111 11111 1 112456776 57999999999999865
No 112
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.88 E-value=5.2e-08 Score=83.97 Aligned_cols=159 Identities=14% Similarity=0.142 Sum_probs=83.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh-----CCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHH--HH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLL--SK 148 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~-----g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll--~~ 148 (277)
.++..|+|+|++||||||+++.|+..+ +..+++.+++ +..+.....+ .. . -..+....+. ..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~-~~~~~~~~~~-------~~-~--~~~~~~~~l~~~a~ 90 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNV-RHGLCSDLGF-------SD-A--DRKENIRRVGEVAK 90 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeH-HhhhhhcCCc-------Cc-c--cHHHHHHHHHHHHH
Confidence 477899999999999999999999986 3455555443 3222110000 00 0 0011111211 11
Q ss_pred HHHcCCccCccEEEEcCccCC-HHHHHHHHhhc-CcCE-EEEecCCHHHHHHhhcchHHH--HHHHHHHhchhHHHHHHh
Q 023790 149 RLEDGYYRGEIGFILDGLPRS-RIQAEILDQLA-EIDL-VVNFKCADNFIVTNRGGSLKE--KLEAYAELGKPLEDYYQK 223 (277)
Q Consensus 149 ~l~~~~~~~~~g~IldGfPrt-~~qae~l~~~~-~~d~-vI~L~~~~e~l~~Rl~~~~~~--rl~~y~~~~~~l~~~y~~ 223 (277)
.+.. .+ ..|+..+... ..+.+.+.... ..++ +|+|++|.+++.+|....+-. +...+.. .......|+.
T Consensus 91 ~~~~----~G-~~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R~~r~l~~~~~~~~~~~-l~~~r~~Y~~ 164 (198)
T PRK03846 91 LMVD----AG-LVVLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEARDPKGLYKKARAGEIRN-FTGIDSVYEA 164 (198)
T ss_pred HHhh----CC-CEEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhcCchhHHHHhhcCCccC-cccccccCCC
Confidence 1111 12 3444555542 33344444332 2344 799999999999994211111 1011111 1112223552
Q ss_pred cC-cEEEEeC-CCCHHHHHHHHHHHHHHcc
Q 023790 224 QK-KLLEFQV-GSAPLETWQGLLTALHLQH 251 (277)
Q Consensus 224 ~~-~li~Ida-~~s~eev~~~I~~~L~~~~ 251 (277)
.. --+.||+ +.++++++++|++.+...+
T Consensus 165 p~~ad~~Idt~~~~~~~vv~~Il~~l~~~~ 194 (198)
T PRK03846 165 PESPEIHLDTGEQLVTNLVEQLLDYLRQRD 194 (198)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 21 2245664 6899999999999997654
No 113
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.86 E-value=2.4e-08 Score=101.76 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=35.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHh
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~ 116 (277)
++|.|.|||||||||+|+.||+++|+.++++|.++|..
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~ 39 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRAC 39 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence 47999999999999999999999999999999998874
No 114
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.86 E-value=5.6e-08 Score=82.57 Aligned_cols=153 Identities=18% Similarity=0.173 Sum_probs=84.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh---C--CCccchhHHHHHhcCCCChhHHHHHHHHhccccchHH---HHHHH--
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSED---IIFGL-- 145 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~---g--~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~---~~~~l-- 145 (277)
.++..|+|.|+|||||||+++.|+..+ | ..+++.+ -+++.+..+..+ .+.+ ....+
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d-~~r~~l~~~~~~-------------~~~~~~~~~~~~~~ 81 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGD-NVRHGLNKDLGF-------------SEEDRKENIRRIGE 81 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCh-HHHhhhccccCC-------------CHHHHHHHHHHHHH
Confidence 467899999999999999999999986 2 3455553 444433211111 1111 11111
Q ss_pred HHHHHHcCCccCccEEEEcCccCCHHHHHHHHhhc--CcCEEEEecCCHHHHHHhhcchHH--HHHHHHHHhchhHHHHH
Q 023790 146 LSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLA--EIDLVVNFKCADNFIVTNRGGSLK--EKLEAYAELGKPLEDYY 221 (277)
Q Consensus 146 l~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~~~--~~d~vI~L~~~~e~l~~Rl~~~~~--~rl~~y~~~~~~l~~~y 221 (277)
+...+. ..+..+|+|..-....+.+.+.... .+-.+|+|++|.+++.+|....+- .+...+... ..+...|
T Consensus 82 ~~~~~~----~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~l-~~~~~~y 156 (184)
T TIGR00455 82 VAKLFV----RNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQRDPKGLYKKARNGEIKGF-TGIDSPY 156 (184)
T ss_pred HHHHHH----cCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHhCchhHHHHHhcCCccCc-ccccCCC
Confidence 111121 2367788887533344444454432 234689999999999999432111 000011111 1122234
Q ss_pred Hh-cCcEEEEeC-CCCHHHHHHHHHHHH
Q 023790 222 QK-QKKLLEFQV-GSAPLETWQGLLTAL 247 (277)
Q Consensus 222 ~~-~~~li~Ida-~~s~eev~~~I~~~L 247 (277)
.. ..--++||+ ..+++++.++|.+.|
T Consensus 157 ~~p~~adl~Idt~~~~~~~~~~~i~~~l 184 (184)
T TIGR00455 157 EAPENPEVVLDTDQNDREECVGQIIEKL 184 (184)
T ss_pred CCCCCCcEEEECCCCCHHHHHHHHHHhC
Confidence 32 223467775 478999999988653
No 115
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.81 E-value=5e-08 Score=95.69 Aligned_cols=97 Identities=9% Similarity=-0.002 Sum_probs=70.4
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCC
Q 023790 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY 154 (277)
Q Consensus 75 ~~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~ 154 (277)
+.++..|+++|+|||||||+|+.+++..|+.+|+.|++ .. . ......+...+..
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~l-g~--------~---------------~~~~~~a~~~L~~-- 419 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTL-GS--------T---------------QNCLTACERALDQ-- 419 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHH-HH--------H---------------HHHHHHHHHHHhC--
Confidence 45778999999999999999999999999999999765 11 0 1122334444553
Q ss_pred ccCccEEEEcCccCCHHHHHHHHhh----cCcCEEEEecCCHHHHHHhhc
Q 023790 155 YRGEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNRG 200 (277)
Q Consensus 155 ~~~~~g~IldGfPrt~~qae~l~~~----~~~d~vI~L~~~~e~l~~Rl~ 200 (277)
+..+|+|..-.+..+.+.+.++ ..+-.++++++|.+++.+|+.
T Consensus 420 ---G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~ 466 (526)
T TIGR01663 420 ---GKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIA 466 (526)
T ss_pred ---CCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHH
Confidence 5679999876666554444332 233468999999999999983
No 116
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=98.81 E-value=9.3e-08 Score=82.71 Aligned_cols=31 Identities=19% Similarity=0.111 Sum_probs=27.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCcc
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~I 107 (277)
..+.|+|.|+.|+||||+|++||+++|..++
T Consensus 3 ~~~~IvI~G~IG~GKSTLa~~La~~l~~~~~ 33 (216)
T COG1428 3 VAMVIVIEGMIGAGKSTLAQALAEHLGFKVF 33 (216)
T ss_pred cccEEEEecccccCHHHHHHHHHHHhCCcee
Confidence 3578999999999999999999999997653
No 117
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.77 E-value=1.4e-07 Score=81.74 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=32.3
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhC---CCccchhHHH
Q 023790 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLE---VPRISMSSIV 113 (277)
Q Consensus 75 ~~~~~~Ivi~G~pGSGKSTla~~La~~~g---~~~Is~~dll 113 (277)
|+++.+|.|.|++||||||+++.|+..++ +.+++.++.+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~ 44 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYY 44 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccc
Confidence 46788999999999999999999999875 4566776543
No 118
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=98.75 E-value=6.1e-07 Score=74.99 Aligned_cols=165 Identities=12% Similarity=0.084 Sum_probs=87.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh-CCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCcc
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~-g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (277)
++++++.|.||+||||+++.+.+.+ +...++-|+++-+......- -+.++.+. -.|.+....+......... .
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~gl--ve~rD~~R---klp~e~Q~~lq~~Aa~rI~-~ 77 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGL--VEHRDEMR---KLPLENQRELQAEAAKRIA-E 77 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCC--cccHHHHh---cCCHHHHHHHHHHHHHHHH-H
Confidence 5889999999999999999999998 88889999998654321100 01122222 1233333333332222110 0
Q ss_pred CccEEEEcCc-----cCCHH--HHHHHHhhcCcCEEEEecCCHHHHHHhhcch--------HHHHHHHHHHhchhHHHHH
Q 023790 157 GEIGFILDGL-----PRSRI--QAEILDQLAEIDLVVNFKCADNFIVTNRGGS--------LKEKLEAYAELGKPLEDYY 221 (277)
Q Consensus 157 ~~~g~IldGf-----Prt~~--qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~--------~~~rl~~y~~~~~~l~~~y 221 (277)
....+|+|+. |...- --.+.-+.+.||.+|.|+.+++.+..|-... -.+-+...++.....-=.|
T Consensus 78 ~~~~iivDtH~~IkTP~GylpgLP~~Vl~~l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~e~i~eHqe~nR~aA~a~ 157 (189)
T COG2019 78 MALEIIVDTHATIKTPAGYLPGLPSWVLEELNPDVIVLLEADPEEILERRLRDSRRDRDVESVEEIREHQEMNRAAAMAY 157 (189)
T ss_pred hhhceEEeccceecCCCccCCCCcHHHHHhcCCCEEEEEeCCHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHH
Confidence 1122677632 11000 0011122368999999999999988875211 0111221111111000011
Q ss_pred H-hcC-cEEEEe-CCCCHHHHHHHHHHHHH
Q 023790 222 Q-KQK-KLLEFQ-VGSAPLETWQGLLTALH 248 (277)
Q Consensus 222 ~-~~~-~li~Id-a~~s~eev~~~I~~~L~ 248 (277)
. ..+ .+..|. -+..+++..++|...|.
T Consensus 158 A~~~gatVkIV~n~~~~~e~Aa~eiv~~l~ 187 (189)
T COG2019 158 AILLGATVKIVENHEGDPEEAAEEIVELLD 187 (189)
T ss_pred HHHhCCeEEEEeCCCCCHHHHHHHHHHHHh
Confidence 1 123 343443 35789999999988875
No 119
>PRK07667 uridine kinase; Provisional
Probab=98.73 E-value=5e-08 Score=83.91 Aligned_cols=140 Identities=9% Similarity=0.072 Sum_probs=76.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC-----CCccchhHHHHHhcC----CCChh-------------HHHHHHHHhcc
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQDLS----PRSSL-------------HKQIANAVNRG 134 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g-----~~~Is~~dllr~~~~----~~~~l-------------g~~i~~~l~~G 134 (277)
...+|.|.|+|||||||+|+.|++.++ +..+++++.+..... ...+. ...+-..+..|
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~~ 95 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQNE 95 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcCC
Confidence 348899999999999999999999863 457888887654321 11110 00110111122
Q ss_pred ccchHHHHHHHHHHHHHcC-CccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcchHHHHHHHHHHh
Q 023790 135 EVVSEDIIFGLLSKRLEDG-YYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLKEKLEAYAEL 213 (277)
Q Consensus 135 ~~ip~~~~~~ll~~~l~~~-~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~~~~rl~~y~~~ 213 (277)
+.+.--............. ......-+|+||.-. .. ..+.. .+|.+|+++||+++.++|+.++-..-.+.|+..
T Consensus 96 ~~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l--~~-~~~~~--~~d~~v~V~~~~~~~~~R~~~r~~~~~~~~~~r 170 (193)
T PRK07667 96 TKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFL--QR-KEWRD--FFHYMVYLDCPRETRFLRESEETQKNLSKFKNR 170 (193)
T ss_pred CeEEEeeeccccccccccceecCCCCEEEEEehhh--hh-hhHHh--hceEEEEEECCHHHHHHHHhcccHhHHHHHHHH
Confidence 1110000000000000000 011235577788531 11 11222 369999999999999999966555555667766
Q ss_pred chhHHHHH
Q 023790 214 GKPLEDYY 221 (277)
Q Consensus 214 ~~~l~~~y 221 (277)
+.+.++.|
T Consensus 171 ~~~a~~~y 178 (193)
T PRK07667 171 YWKAEDYY 178 (193)
T ss_pred hHHHHHHH
Confidence 66666666
No 120
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.73 E-value=6.8e-07 Score=81.83 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=34.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCc-cchhHHHHHhc
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPR-ISMSSIVRQDL 117 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~-Is~~dllr~~~ 117 (277)
++|+.|+|.|++||||||+|..||+++|..+ |+ .|.+|+.+
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~-~D~~re~~ 131 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIG-TDSIREVM 131 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEe-chHHHHHH
Confidence 4678999999999999999999999999985 55 56666544
No 121
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.72 E-value=2.1e-07 Score=78.92 Aligned_cols=163 Identities=16% Similarity=0.182 Sum_probs=78.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCC--ccchhHHHHHhcCCCChhHHHHHHHHhccccch--HH---HHHHHHHHHH
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP--RISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS--ED---IIFGLLSKRL 150 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~--~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip--~~---~~~~ll~~~l 150 (277)
+.+|++-|++-|||||+|+.|.+.+.-+ |+++|.++.. +.++... . ..-+.-+...+ .. .+.......+
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~-~~~~~~~--~-~~g~~~~~~~~~~~~~~~~~~~~~~~~i 76 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDM-MPPGRYR--P-GDGLEPAGDRPDGGPLFRRLYAAMHAAI 76 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHH-S-GGGGT--S-TTSEEEETTSEEE-HHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhh-cCccccc--C-CccccccccCCchhHHHHHHHHHHHHHH
Confidence 3579999999999999999999998665 6777766653 2211000 0 00000000000 01 1112222222
Q ss_pred HcCCccCccEEEEcCccCCHHH-HHHHHhh-cC-cCEEEEecCCHHHHHHhhcchHHHHHHHHHHhchhHHHHHHhcCcE
Q 023790 151 EDGYYRGEIGFILDGLPRSRIQ-AEILDQL-AE-IDLVVNFKCADNFIVTNRGGSLKEKLEAYAELGKPLEDYYQKQKKL 227 (277)
Q Consensus 151 ~~~~~~~~~g~IldGfPrt~~q-ae~l~~~-~~-~d~vI~L~~~~e~l~~Rl~~~~~~rl~~y~~~~~~l~~~y~~~~~l 227 (277)
... ...+..+|+|+...+... .+.+.+. .. +-++|-+.||.+++.+|-..+-++..-.-+.+...+ ++....=
T Consensus 77 aa~-a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgDR~~G~a~~q~~~V---h~~~~YD 152 (174)
T PF07931_consen 77 AAM-ARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGDRPIGLAAWQAEHV---HEGGRYD 152 (174)
T ss_dssp HHH-HHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTSSSTTHHHHHTTGG---GTT---S
T ss_pred HHH-HhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCCcchHHHHHHHhhc---ccCCCCC
Confidence 211 134788999976555443 4445332 23 347999999999999987332211110111111111 1111112
Q ss_pred EEEeCC-CCHHHHHHHHHHHHH
Q 023790 228 LEFQVG-SAPLETWQGLLTALH 248 (277)
Q Consensus 228 i~Ida~-~s~eev~~~I~~~L~ 248 (277)
+.||++ .+|+|+++.|++.|+
T Consensus 153 leVDTs~~sp~ecA~~I~~~~~ 174 (174)
T PF07931_consen 153 LEVDTSATSPEECAREILARLE 174 (174)
T ss_dssp EEEETTSS-HHHHHHHHHTT--
T ss_pred EEEECCCCCHHHHHHHHHHHhC
Confidence 578976 689999999988764
No 122
>PRK06696 uridine kinase; Validated
Probab=98.72 E-value=6.3e-08 Score=85.02 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=32.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh---CCCc--cchhHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EVPR--ISMSSIVR 114 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~---g~~~--Is~~dllr 114 (277)
.++.+|.|.|++||||||+|+.|++.+ |..+ +++|+.+.
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 578999999999999999999999998 5544 55777663
No 123
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.72 E-value=8.4e-08 Score=80.87 Aligned_cols=156 Identities=9% Similarity=0.024 Sum_probs=82.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCC---CCh----hHHHHHHHHhccccchH--------HHH
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP---RSS----LHKQIANAVNRGEVVSE--------DII 142 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~---~~~----lg~~i~~~l~~G~~ip~--------~~~ 142 (277)
+..|+|+||+||||||+++.|++.+...++......|+.... +.. ....+...+..|+.+.. ...
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 80 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTP 80 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCc
Confidence 457999999999999999999998765554443333322111 000 01123333333433211 011
Q ss_pred HHHHHHHHHcCCccCccEEEEcCccCCHHHHHHHH-hhcCcCEEEEecCCHHHHHHhhc-------chHHHHHHHHHHhc
Q 023790 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILD-QLAEIDLVVNFKCADNFIVTNRG-------GSLKEKLEAYAELG 214 (277)
Q Consensus 143 ~~ll~~~l~~~~~~~~~g~IldGfPrt~~qae~l~-~~~~~d~vI~L~~~~e~l~~Rl~-------~~~~~rl~~y~~~~ 214 (277)
...+...+.+ +..+|+|.-+ ..+..+. ....+-.++++..+.+.+.+|+. +.+++|++.+..+.
T Consensus 81 ~~~i~~~~~~-----g~~vi~d~~~---~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~~~~~~i~~rl~~~~~~~ 152 (180)
T TIGR03263 81 KSPVEEALAA-----GKDVLLEIDV---QGARQVKKKFPDAVSIFILPPSLEELERRLRKRGTDSEEVIERRLAKAKKEI 152 (180)
T ss_pred HHHHHHHHHC-----CCeEEEECCH---HHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 2334444443 4567888542 2223332 22233345555777889999983 24566666554322
Q ss_pred hhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHH
Q 023790 215 KPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALH 248 (277)
Q Consensus 215 ~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~ 248 (277)
.. -...+ .+.++ .+.+++.+++...+.
T Consensus 153 ~~----~~~~d-~~i~n--~~~~~~~~~l~~~~~ 179 (180)
T TIGR03263 153 AH----ADEFD-YVIVN--DDLEKAVEELKSIIL 179 (180)
T ss_pred hc----cccCc-EEEEC--CCHHHHHHHHHHHHh
Confidence 11 11112 22333 478999999988764
No 124
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.71 E-value=1.8e-07 Score=94.20 Aligned_cols=159 Identities=13% Similarity=0.104 Sum_probs=88.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh-----CCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHH--H
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLS--K 148 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~-----g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~--~ 148 (277)
.++..|+++|.|||||||+|+.|++++ ++.+++. |.+|..+..+......-+ ..+...+.. .
T Consensus 458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~-D~~r~~l~~~~~~~~~~r----------~~~~~~l~~~a~ 526 (632)
T PRK05506 458 QKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDG-DNVRHGLNRDLGFSDADR----------VENIRRVAEVAR 526 (632)
T ss_pred CCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcC-hhhhhccCCCCCCCHHHH----------HHHHHHHHHHHH
Confidence 368899999999999999999999997 3456766 455654432211111100 011111111 1
Q ss_pred HHHcCCccCccEEEEcCccCCHHHHHHHHhhc--CcCEEEEecCCHHHHHHhhcchHH--HHHHHHHHhchhHHHHHHh-
Q 023790 149 RLEDGYYRGEIGFILDGLPRSRIQAEILDQLA--EIDLVVNFKCADNFIVTNRGGSLK--EKLEAYAELGKPLEDYYQK- 223 (277)
Q Consensus 149 ~l~~~~~~~~~g~IldGfPrt~~qae~l~~~~--~~d~vI~L~~~~e~l~~Rl~~~~~--~rl~~y~~~~~~l~~~y~~- 223 (277)
.+. ..+..+|+|..-....+.+.+.+.. ..-.+|||+++.+++.+|....+- .+-..++ ....+...|+.
T Consensus 527 ~~~----~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~~r~L~~~~~~~~l~-~l~~~r~~y~~P 601 (632)
T PRK05506 527 LMA----DAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARDPKGLYAKARAGEIK-NFTGIDSPYEAP 601 (632)
T ss_pred HHH----hCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhCCcchhhhccccccc-cccccccCCCCC
Confidence 111 2345677775422233334443332 223799999999999999522111 1111111 11112222432
Q ss_pred cCcEEEEeC-CCCHHHHHHHHHHHHHHc
Q 023790 224 QKKLLEFQV-GSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 224 ~~~li~Ida-~~s~eev~~~I~~~L~~~ 250 (277)
..--+.||+ +.+++++.++|.+.|...
T Consensus 602 ~~a~~~Id~~~~s~~e~v~~Ii~~l~~~ 629 (632)
T PRK05506 602 ENPELRLDTTGRSPEELAEQVLELLRRR 629 (632)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 223456775 689999999999999764
No 125
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.67 E-value=8.3e-07 Score=74.87 Aligned_cols=164 Identities=15% Similarity=0.080 Sum_probs=93.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh---CCC-ccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EVP-RISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLE 151 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~---g~~-~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~ 151 (277)
.++..|+|.|.+||||||+|..|.+++ |.. ++=-||-+|.-+..+-....+=+ ..+--.+..+.+.+.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR--------~eniRRvaevAkll~ 92 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDR--------IENIRRVAEVAKLLA 92 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHH--------HHHHHHHHHHHHHHH
Confidence 578899999999999999999999986 443 23335777776653211111100 000011222333333
Q ss_pred cCCccCccEEEEcCccCC----HHHHHHHHhhcCcCEEEEecCCHHHHHHhhcchH-HHHHHHHHHhchhHHHHHHhc-C
Q 023790 152 DGYYRGEIGFILDGLPRS----RIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSL-KEKLEAYAELGKPLEDYYQKQ-K 225 (277)
Q Consensus 152 ~~~~~~~~g~IldGfPrt----~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~~-~~rl~~y~~~~~~l~~~y~~~-~ 225 (277)
. ...++|-.|-.- ..++..+-. ...-+=||++||.+++.+|=+.-+ ++-.+---.+.-.+..-|+.+ +
T Consensus 93 d-----aG~iviva~ISP~r~~R~~aR~~~~-~~~FiEVyV~~pl~vce~RDpKGLYkKAr~GeI~~fTGid~pYE~P~~ 166 (197)
T COG0529 93 D-----AGLIVIVAFISPYREDRQMARELLG-EGEFIEVYVDTPLEVCERRDPKGLYKKARAGEIKNFTGIDSPYEAPEN 166 (197)
T ss_pred H-----CCeEEEEEeeCccHHHHHHHHHHhC-cCceEEEEeCCCHHHHHhcCchHHHHHHHcCCCCCCcCCCCCCCCCCC
Confidence 2 234555444222 223333221 122368999999999999975433 211110012222344556654 3
Q ss_pred cEEEEeC-CCCHHHHHHHHHHHHHHcccc
Q 023790 226 KLLEFQV-GSAPLETWQGLLTALHLQHIN 253 (277)
Q Consensus 226 ~li~Ida-~~s~eev~~~I~~~L~~~~~~ 253 (277)
--+.+|+ ..++++.+++|...|...++.
T Consensus 167 Pel~l~t~~~~vee~v~~i~~~l~~~~~~ 195 (197)
T COG0529 167 PELHLDTDRNSVEECVEQILDLLKERKII 195 (197)
T ss_pred CeeEeccccCCHHHHHHHHHHHHHhcccc
Confidence 4667886 589999999999999877654
No 126
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=98.64 E-value=2.2e-06 Score=76.90 Aligned_cols=169 Identities=17% Similarity=0.170 Sum_probs=92.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCcc---chhHHHHHhcCCC-Chh---------HHHHHHHHh--ccccchHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI---SMSSIVRQDLSPR-SSL---------HKQIANAVN--RGEVVSED 140 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~I---s~~dllr~~~~~~-~~l---------g~~i~~~l~--~G~~ip~~ 140 (277)
.+.++|++.|+.|||||++|+.||+++|+.|+ .+|+++-...-.. .++ --.++..-. +|+ .+..
T Consensus 69 enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~d-lsa~ 147 (393)
T KOG3877|consen 69 ENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGD-LSAA 147 (393)
T ss_pred ccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCcc-HHHH
Confidence 47789999999999999999999999999875 4555543221100 000 000111111 111 1111
Q ss_pred HHHHHHH-------HHHHcCCccCccEEEEcCccCCH-HHHHHHH----------------------hhcCcCEEEEecC
Q 023790 141 IIFGLLS-------KRLEDGYYRGEIGFILDGLPRSR-IQAEILD----------------------QLAEIDLVVNFKC 190 (277)
Q Consensus 141 ~~~~ll~-------~~l~~~~~~~~~g~IldGfPrt~-~qae~l~----------------------~~~~~d~vI~L~~ 190 (277)
+...+.. ++++.. ...++|+|++..|.+. ..++.|. +...|.+||+|++
T Consensus 148 ~Q~r~y~~R~~QY~dAL~Hi-L~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~ 226 (393)
T KOG3877|consen 148 MQDRIYNCRFDQYLDALAHI-LNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDT 226 (393)
T ss_pred HHHHHHHhHHHHHHHHHHHH-HhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcC
Confidence 1111111 222221 2468999999877653 2333332 1247899999999
Q ss_pred CHHHHHHhhcch--------H-HHHHHHHHHhch-hHHHHHHhcCcEEEEeC--CCCHHHHHHHHHHH
Q 023790 191 ADNFIVTNRGGS--------L-KEKLEAYAELGK-PLEDYYQKQKKLLEFQV--GSAPLETWQGLLTA 246 (277)
Q Consensus 191 ~~e~l~~Rl~~~--------~-~~rl~~y~~~~~-~l~~~y~~~~~li~Ida--~~s~eev~~~I~~~ 246 (277)
|...+.+++..+ + ++-++..++..+ ..+.-|+.+..++.-|. .+.-+.|+++|..+
T Consensus 227 Pv~~v~~~Ik~rg~~~Eik~~s~aYL~diE~~YK~~fL~e~s~h~eiL~Ydwt~~gdt~~VVEDIErl 294 (393)
T KOG3877|consen 227 PVNKVLENIKRRGNTDEIKTVSEAYLKDIEESYKDSFLREYSNHSEILAYDWTKPGDTDAVVEDIERL 294 (393)
T ss_pred CcHHHHHHHHhcCCCcceeehhHHHHHHHHHHHHHHHHHHHhhhhheeeeecccCCCchhHHHhhhhh
Confidence 999999998321 1 122222222221 12333455555555564 35567777777643
No 127
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.64 E-value=7.6e-09 Score=81.63 Aligned_cols=110 Identities=14% Similarity=0.076 Sum_probs=53.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcC-CccCcc
Q 023790 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDG-YYRGEI 159 (277)
Q Consensus 81 Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~-~~~~~~ 159 (277)
|+|.|+|||||||+|+.|+++++..+. +.............. ...........+....++....... ......
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLGDIIR---DIAPEEDIVDSIDDN---PDWKENKRLDMEFQDELLDSIIQAIRRMNKGR 74 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCHHHH---HHHHHTTSHSSHCCH---HCCCCCCCSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CEEECCCCCCHHHHHHHHHHHHCcHHH---HHHHhcCCccccccc---chhhhhhhhhhhhHHHHHHHHHHhhcccccCC
Confidence 789999999999999999999832221 222111100000000 0011112222222222222111110 012457
Q ss_pred EEEEcCccCCHHHHHHHHhhcCcCEE-EEecCCHHHHHHhhcch
Q 023790 160 GFILDGLPRSRIQAEILDQLAEIDLV-VNFKCADNFIVTNRGGS 202 (277)
Q Consensus 160 g~IldGfPrt~~qae~l~~~~~~d~v-I~L~~~~e~l~~Rl~~~ 202 (277)
.+|+||....... ....... |+|+||++++.+|+.++
T Consensus 75 ~~iid~~~~~~~~------~~~~~~~~i~L~~~~e~~~~R~~~R 112 (129)
T PF13238_consen 75 NIIIDGILSNLEL------ERLFDIKFIFLDCSPEELRKRLKKR 112 (129)
T ss_dssp CEEEEESSEEECE------TTEEEESSEEEE--HHHHHHHHHCT
T ss_pred cEEEecccchhcc------cccceeeEEEEECCHHHHHHHHHhC
Confidence 7899987432110 0111223 99999999999999543
No 128
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.63 E-value=3.8e-07 Score=75.24 Aligned_cols=105 Identities=17% Similarity=0.103 Sum_probs=59.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh---CCC--ccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHH--HHHHHc
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLL---EVP--RISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLL--SKRLED 152 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~---g~~--~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll--~~~l~~ 152 (277)
.|+|.|.|||||||+|+.|++.+ |.. +++. |-++..+.....+... . ..+....+. ...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~-d~~r~~l~~~~~~~~~--------~--~~~~~~~~~~~a~~l~- 68 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG-DNVRHGLNKDLGFSRE--------D--REENIRRIAEVAKLLA- 68 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC-HHHHHhhhhccCCCcc--------h--HHHHHHHHHHHHHHHH-
Confidence 37899999999999999999998 543 3443 4455433211110000 0 001111111 11122
Q ss_pred CCccCccEEEEcCccCCHHHHHHHHhhc--CcCEEEEecCCHHHHHHhh
Q 023790 153 GYYRGEIGFILDGLPRSRIQAEILDQLA--EIDLVVNFKCADNFIVTNR 199 (277)
Q Consensus 153 ~~~~~~~g~IldGfPrt~~qae~l~~~~--~~d~vI~L~~~~e~l~~Rl 199 (277)
..+..+|+|..-....+...+.... .+-.+|+|++|.+++.+|.
T Consensus 69 ---~~G~~VIid~~~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~ 114 (149)
T cd02027 69 ---DAGLIVIAAFISPYREDREAARKIIGGGDFLEVFVDTPLEVCEQRD 114 (149)
T ss_pred ---hCCCEEEEccCCCCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhC
Confidence 1356788886543444444444333 3446899999999999986
No 129
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.63 E-value=6e-07 Score=76.92 Aligned_cols=158 Identities=9% Similarity=0.006 Sum_probs=84.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCCh--------hHHHHHHHHhccccchH--------
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSS--------LHKQIANAVNRGEVVSE-------- 139 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~--------lg~~i~~~l~~G~~ip~-------- 139 (277)
.+++.|+|+||+||||+|+++.|.+++.-.+.+....=|.. ..+.. -.+.....+..|+.+.-
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~-r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~Y 80 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAP-RPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYY 80 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCC-CCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeee
Confidence 36788999999999999999999988632222221111111 11110 01223334444443211
Q ss_pred HHHHHHHHHHHHcCCccCccEEEEcCccCCHHHHHHHHhhcCcC--EEEEecCC-HHHHHHhhc-------chHHHHHHH
Q 023790 140 DIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEID--LVVNFKCA-DNFIVTNRG-------GSLKEKLEA 209 (277)
Q Consensus 140 ~~~~~ll~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~~~~~d--~vI~L~~~-~e~l~~Rl~-------~~~~~rl~~ 209 (277)
-+-.+-+...+.. +..+|+|--+....+ +... .++ .+|++..| .+++.+|+. +.+++|++.
T Consensus 81 Gt~~~~i~~~~~~-----g~~~i~d~~~~g~~~---l~~~-~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~~ 151 (186)
T PRK14737 81 GTPKAFIEDAFKE-----GRSAIMDIDVQGAKI---IKEK-FPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIEN 151 (186)
T ss_pred cCcHHHHHHHHHc-----CCeEEEEcCHHHHHH---HHHh-CCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 0112223333333 466788865433333 3322 233 68899885 588888882 346677764
Q ss_pred HHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 210 YAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 210 y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
...+ .+ +....-. .|+.+ +.+++.++|.++|..+
T Consensus 152 ~~~e----~~-~~~~~D~-vI~N~-dle~a~~ql~~ii~~~ 185 (186)
T PRK14737 152 GIIE----LD-EANEFDY-KIIND-DLEDAIADLEAIICGK 185 (186)
T ss_pred HHHH----Hh-hhccCCE-EEECc-CHHHHHHHHHHHHhcC
Confidence 2211 11 1111112 33324 8999999999888653
No 130
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.58 E-value=1.1e-06 Score=75.89 Aligned_cols=108 Identities=17% Similarity=0.092 Sum_probs=57.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh---CCCccchhH-HHHHhcCCCChhHH---HHHHHHhccccchHHHHHHHHHHHH
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSS-IVRQDLSPRSSLHK---QIANAVNRGEVVSEDIIFGLLSKRL 150 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~---g~~~Is~~d-llr~~~~~~~~lg~---~i~~~l~~G~~ip~~~~~~ll~~~l 150 (277)
++.|++.|+|||||||.|+.|++.+ +...++.+. ..+- +..+..++. .-++.+ .+-...++..++
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~-i~~DEslpi~ke~yres~-------~ks~~rlldSal 72 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRG-ILWDESLPILKEVYRESF-------LKSVERLLDSAL 72 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhh-eecccccchHHHHHHHHH-------HHHHHHHHHHHh
Confidence 4679999999999999999999986 222333221 1111 111112111 111111 111222333333
Q ss_pred HcCCccCccEEEEcCc--cCCH-HHHHHHH-hhcCcCEEEEecCCHHHHHHhh
Q 023790 151 EDGYYRGEIGFILDGL--PRSR-IQAEILD-QLAEIDLVVNFKCADNFIVTNR 199 (277)
Q Consensus 151 ~~~~~~~~~g~IldGf--Prt~-~qae~l~-~~~~~d~vI~L~~~~e~l~~Rl 199 (277)
. +.-+|+|.. -.+. .|..... +...+-+||++.||.|++.+|-
T Consensus 73 k------n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN 119 (261)
T COG4088 73 K------NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRN 119 (261)
T ss_pred c------ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhh
Confidence 3 345666753 1111 1221111 1235568999999999999998
No 131
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.57 E-value=7e-07 Score=74.38 Aligned_cols=112 Identities=17% Similarity=0.134 Sum_probs=59.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh---CC--CccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL---EV--PRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLE 151 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~---g~--~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~ 151 (277)
+|..|+|.|.|||||||+|+.|.+++ |. .+++. |.+|..+..+-.....-+.. .+ . ....+...+.
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg-D~lR~~l~~dl~fs~~dR~e-----~~--r-r~~~~A~ll~ 71 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG-DNLRHGLNADLGFSKEDREE-----NI--R-RIAEVAKLLA 71 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH-HHHCTTTTTT--SSHHHHHH-----HH--H-HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC-cchhhccCCCCCCCHHHHHH-----HH--H-HHHHHHHHHH
Confidence 47889999999999999999999987 33 34554 66666554321111110100 00 0 0112222233
Q ss_pred cCCccCccEEEEcCccCCHHHHHHHHhhcC--cCEEEEecCCHHHHHHhhcc
Q 023790 152 DGYYRGEIGFILDGLPRSRIQAEILDQLAE--IDLVVNFKCADNFIVTNRGG 201 (277)
Q Consensus 152 ~~~~~~~~g~IldGfPrt~~qae~l~~~~~--~d~vI~L~~~~e~l~~Rl~~ 201 (277)
. .+.-+|++-.--..+..+...+... .-+-||++||.+++.+|-..
T Consensus 72 ~----~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD~K 119 (156)
T PF01583_consen 72 D----QGIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKRDPK 119 (156)
T ss_dssp H----TTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHTTT
T ss_pred h----CCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhCch
Confidence 2 2455666643222332233333222 24799999999999999743
No 132
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.57 E-value=1.5e-07 Score=80.75 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=32.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh-CCCccchhHHHHH
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQ 115 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~-g~~~Is~~dllr~ 115 (277)
+|.|.|+|||||||+|+.|++.+ ++.+|++|+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~ 37 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKP 37 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCC
Confidence 47899999999999999999998 7899999988754
No 133
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.56 E-value=5.1e-07 Score=78.80 Aligned_cols=141 Identities=18% Similarity=0.225 Sum_probs=80.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCC---ccchhHHHHHhcC------C----CCh-------hHHHHHHHHhccc
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP---RISMSSIVRQDLS------P----RSS-------LHKQIANAVNRGE 135 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~---~Is~~dllr~~~~------~----~~~-------lg~~i~~~l~~G~ 135 (277)
.+..+|-|.|++||||||+|+.|++.++.. .|+.|+.....-. . ..+ +.+.+... .+|+
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L-~~g~ 84 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL-KQGK 84 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHH-HcCC
Confidence 356889999999999999999999999855 6666666542211 0 000 12222222 2333
Q ss_pred cchHHHHHHHHH-HHH-HcCCccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhh-c-------chHHH
Q 023790 136 VVSEDIIFGLLS-KRL-EDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR-G-------GSLKE 205 (277)
Q Consensus 136 ~ip~~~~~~ll~-~~l-~~~~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl-~-------~~~~~ 205 (277)
.+..-. ..... .+. .........-+|++|+---.. +.+.. ..|+.||+++|.++++.|. . .....
T Consensus 85 ~v~~P~-yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr~--~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~ 159 (218)
T COG0572 85 PVDLPV-YDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLRD--LMDLKIFVDTDADVRLIRRIKRDVQERGRDLES 159 (218)
T ss_pred cccccc-cchhcccccCCccccCCCcEEEEeccccccc--HHHHh--hcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHH
Confidence 221000 00000 000 000012356688899732211 22222 3689999999999888876 1 24567
Q ss_pred HHHHHHHhchhHHHHHH
Q 023790 206 KLEAYAELGKPLEDYYQ 222 (277)
Q Consensus 206 rl~~y~~~~~~l~~~y~ 222 (277)
.+++|.....|....|-
T Consensus 160 vi~qy~~~vkp~~~~fI 176 (218)
T COG0572 160 VIEQYVKTVRPMYEQFI 176 (218)
T ss_pred HHHHHHHhhChhhhhcc
Confidence 78888888888766663
No 134
>COG0645 Predicted kinase [General function prediction only]
Probab=98.55 E-value=2.2e-06 Score=71.83 Aligned_cols=114 Identities=14% Similarity=0.105 Sum_probs=68.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcC---Cc
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDG---YY 155 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~---~~ 155 (277)
..+++.|.|||||||+|+.|++.+|..+|..|.+ |+.+.. .+.... ...|-..+. +...+...+... ..
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~i-rk~L~g-~p~~~r----~~~g~ys~~--~~~~vy~~l~~~A~l~l 73 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVI-RKRLFG-VPEETR----GPAGLYSPA--ATAAVYDELLGRAELLL 73 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHH-HHHhcC-Cccccc----CCCCCCcHH--HHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999554 555443 111000 001111111 111111111110 01
Q ss_pred cCccEEEEcCccCCHHHHHHHHhh---cC-cCEEEEecCCHHHHHHhhc
Q 023790 156 RGEIGFILDGLPRSRIQAEILDQL---AE-IDLVVNFKCADNFIVTNRG 200 (277)
Q Consensus 156 ~~~~g~IldGfPrt~~qae~l~~~---~~-~d~vI~L~~~~e~l~~Rl~ 200 (277)
..+..+|+|+......+.+..... .. +-..|+++++.+++..|+.
T Consensus 74 ~~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~ 122 (170)
T COG0645 74 SSGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLA 122 (170)
T ss_pred hCCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHH
Confidence 346789999865555544444332 22 3456999999999999993
No 135
>PHA03132 thymidine kinase; Provisional
Probab=98.53 E-value=9.5e-07 Score=87.23 Aligned_cols=125 Identities=14% Similarity=0.075 Sum_probs=69.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccc---cchHHHHH----------
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGE---VVSEDIIF---------- 143 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~---~ip~~~~~---------- 143 (277)
+++.|+|.|+.||||||+++.|++++|..++-+.+=+.....-.+..++.+.+.+.++. ..+...+.
T Consensus 256 ~~~fIv~EGidGsGKTTlik~L~e~lg~~Vi~t~EP~~~W~~vy~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~FA~Pf 335 (580)
T PHA03132 256 PACFLFLEGVMGVGKTTLLNHMRGILGDNVLVFPEPMRYWTEVYSNCLKEIYKLVKPGKHGKTSTSAKLLACQMKFATPF 335 (580)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHhCCceEEEeCCCCchhhccccHHHHHHHHHhcccccCCCHHHHHHHHHHHHhhHH
Confidence 37899999999999999999999998544432211000000001234666666665432 22222221
Q ss_pred HHHHHHHHc---------CCccCccEEEEcCccCCH-H-H---------------HHHHHhh--cCcCEEEEecCCHHHH
Q 023790 144 GLLSKRLED---------GYYRGEIGFILDGLPRSR-I-Q---------------AEILDQL--AEIDLVVNFKCADNFI 195 (277)
Q Consensus 144 ~ll~~~l~~---------~~~~~~~g~IldGfPrt~-~-q---------------ae~l~~~--~~~d~vI~L~~~~e~l 195 (277)
..+..+.+. .....+..+|.|.++.+. . + ...+..+ ..||++|+|+++++++
T Consensus 336 l~~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e~~~lL~~~~~~~PDLiIyLdv~pe~a 415 (580)
T PHA03132 336 RALATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFSHFIQLLSTFRAHEGDVIVLLKLNSEEN 415 (580)
T ss_pred HHHHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHHHHHHHHHHhcccCCCEEEEEeCCHHHH
Confidence 111122111 011235567788776432 1 1 1112222 2589999999999999
Q ss_pred HHhhcc
Q 023790 196 VTNRGG 201 (277)
Q Consensus 196 ~~Rl~~ 201 (277)
++|+..
T Consensus 416 lkRIkk 421 (580)
T PHA03132 416 LRRVKK 421 (580)
T ss_pred HHHHHh
Confidence 999843
No 136
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.52 E-value=2.2e-06 Score=82.56 Aligned_cols=42 Identities=31% Similarity=0.324 Sum_probs=35.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhc
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL 117 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~ 117 (277)
++|..|+|.|+||+||||+|..||+++|+.++-..|.+|+.+
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~l 294 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVL 294 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHH
Confidence 468899999999999999999999999998554446666643
No 137
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.52 E-value=1.6e-07 Score=80.92 Aligned_cols=115 Identities=11% Similarity=0.134 Sum_probs=62.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh---CCCccchhHHHHHhcCCCChhHHHHHHHHhccccc-------hHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVV-------SEDIIFGL 145 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~---g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~i-------p~~~~~~l 145 (277)
.+|..+++.|+|||||||++..+.+.+ ++.+|+.|++ +...+. ...+... ..... ...+...+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~-r~~~p~----~~~~~~~--~~~~~~~~~~~~a~~~~~~~ 85 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEF-RQFHPD----YDELLKA--DPDEASELTQKEASRLAEKL 85 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGG-GGGSTT----HHHHHHH--HCCCTHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHH-HHhccc----hhhhhhh--hhhhhHHHHHHHHHHHHHHH
Confidence 578889999999999999999999987 7778888654 444322 2221111 00000 11233444
Q ss_pred HHHHHHcCCccCccEEEEcCccCCHHHHH-HHHhhc--Cc-CEEEEecCCHHHHHHhhcch
Q 023790 146 LSKRLEDGYYRGEIGFILDGLPRSRIQAE-ILDQLA--EI-DLVVNFKCADNFIVTNRGGS 202 (277)
Q Consensus 146 l~~~l~~~~~~~~~g~IldGfPrt~~qae-~l~~~~--~~-d~vI~L~~~~e~l~~Rl~~~ 202 (277)
+...+.+ +..+|+||.-++..... .++.+. +. -.++++.++++...+|...+
T Consensus 86 ~~~a~~~-----~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R 141 (199)
T PF06414_consen 86 IEYAIEN-----RYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQR 141 (199)
T ss_dssp HHHHHHC-----T--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHH
T ss_pred HHHHHHc-----CCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHH
Confidence 5444443 56899998766655444 333332 22 24788899999999988433
No 138
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=98.46 E-value=8.2e-06 Score=73.93 Aligned_cols=136 Identities=19% Similarity=0.191 Sum_probs=78.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCccCc
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (277)
..|+|.|.+||||||..+.|. .+|+-.|+= +|..++.+++........-...
T Consensus 2 ~~vIiTGlSGaGKs~Al~~lE-D~Gy~cvDN---------------------------lP~~Ll~~l~~~~~~~~~~~~~ 53 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRALE-DLGYYCVDN---------------------------LPPSLLPQLIELLAQSNSKIEK 53 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHHH-hcCeeEEcC---------------------------CcHHHHHHHHHHHHhcCCCCce
Confidence 468999999999999998885 456655432 3444445555332221110123
Q ss_pred cEEEEcCccCCHHHH----HHHHhh--cCcC-EEEEecCCHHHHHHhhcc-----------hHHHHHHHHHHhchhHHHH
Q 023790 159 IGFILDGLPRSRIQA----EILDQL--AEID-LVVNFKCADNFIVTNRGG-----------SLKEKLEAYAELGKPLEDY 220 (277)
Q Consensus 159 ~g~IldGfPrt~~qa----e~l~~~--~~~d-~vI~L~~~~e~l~~Rl~~-----------~~~~rl~~y~~~~~~l~~~ 220 (277)
-.+++|- |+.... +.+.+. ...+ .+|||+|+++++++|..+ .+.+-++.-++...++.+
T Consensus 54 ~Ai~iD~--R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~I~~Er~~L~~lr~- 130 (284)
T PF03668_consen 54 VAIVIDI--RSREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLEAIEKERELLEPLRE- 130 (284)
T ss_pred EEEEEeC--CChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHH-
Confidence 4466773 222211 222222 1333 599999999999999832 122224333344444443
Q ss_pred HHhcCcEEEEeC-CCCHHHHHHHHHHHHHH
Q 023790 221 YQKQKKLLEFQV-GSAPLETWQGLLTALHL 249 (277)
Q Consensus 221 y~~~~~li~Ida-~~s~eev~~~I~~~L~~ 249 (277)
..+ +.||+ +.++.++-+.|.+.+..
T Consensus 131 --~Ad--~vIDTs~l~~~~Lr~~i~~~~~~ 156 (284)
T PF03668_consen 131 --RAD--LVIDTSNLSVHQLRERIRERFGG 156 (284)
T ss_pred --hCC--EEEECCCCCHHHHHHHHHHHhcc
Confidence 222 45675 58899998888887763
No 139
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.42 E-value=4.9e-07 Score=64.85 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.|+|+|+|||||||+++.|++.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999986
No 140
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.42 E-value=4.5e-06 Score=71.61 Aligned_cols=35 Identities=26% Similarity=0.218 Sum_probs=29.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh---CCCccchhHHHH
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVR 114 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~---g~~~Is~~dllr 114 (277)
+|.|.|++||||||+++.|+..+ ++.++++|+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~ 38 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK 38 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence 37899999999999999999987 467788877653
No 141
>PTZ00301 uridine kinase; Provisional
Probab=98.38 E-value=4.8e-06 Score=72.74 Aligned_cols=135 Identities=15% Similarity=0.179 Sum_probs=70.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhC-------CCccchhHHHHHhcCCCChhHHHHHHHHhccc--cchHHHHHHHHHH
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSIVRQDLSPRSSLHKQIANAVNRGE--VVSEDIIFGLLSK 148 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g-------~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~--~ip~~~~~~ll~~ 148 (277)
-++|.|.|+|||||||+|+.|+++++ +..+++|+..+.... .+... ......+. ...-+.+.+.|.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~--~~~~~--~~~~~~d~p~a~D~~~l~~~l~- 77 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSN--IPESE--RAYTNYDHPKSLEHDLLTTHLR- 77 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCccc--CCHHH--hcCCCCCChhhhCHHHHHHHHH-
Confidence 36799999999999999999988762 235666665543210 00000 00000010 011112222221
Q ss_pred HHHcCC--------------------ccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcc-------
Q 023790 149 RLEDGY--------------------YRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG------- 201 (277)
Q Consensus 149 ~l~~~~--------------------~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~------- 201 (277)
.+..+. +....-+|++|+-- . +-..+.. ..|+.||++++.+++..|...
T Consensus 78 ~L~~g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~-l-~~~~l~~--l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG 153 (210)
T PTZ00301 78 ELKSGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILL-F-TNAELRN--EMDCLIFVDTPLDICLIRRAKRDMRERG 153 (210)
T ss_pred HHHcCCcccCCCcccccCCcCCceEEeCCCcEEEEechhh-h-CCHHHHH--hCCEEEEEeCChhHHHHHHHhhhHHhcC
Confidence 111110 11234456788632 1 1111221 368899999999999987622
Q ss_pred -hHHHHHHHHHHhchhHHHHH
Q 023790 202 -SLKEKLEAYAELGKPLEDYY 221 (277)
Q Consensus 202 -~~~~rl~~y~~~~~~l~~~y 221 (277)
..+.-+..|.+...+....|
T Consensus 154 ~~~e~v~~~~~~~v~~~~~~~ 174 (210)
T PTZ00301 154 RTFESVIEQYEATVRPMYYAY 174 (210)
T ss_pred CCHHHHHHHHHHhhcccHHHH
Confidence 12334556776666655555
No 142
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.37 E-value=5.7e-06 Score=74.99 Aligned_cols=107 Identities=20% Similarity=0.126 Sum_probs=52.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh-----CCCccchhHHHHHhcC-CCChhHHHHHHHHhccccchHHHHHHHHHHHHH
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQDLS-PRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLE 151 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~-----g~~~Is~~dllr~~~~-~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~ 151 (277)
++.|+|+|.|||||||+|+.|++.+ .+.+++.+++....-. ..+.-.+.++. .+...+...+.
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~-----------~l~s~v~r~ls 69 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARG-----------SLKSAVERALS 69 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHH-----------HHHHHHHHHHT
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHH-----------HHHHHHHHhhc
Confidence 3589999999999999999999974 3445665444411100 01111111111 12223333333
Q ss_pred cCCccCccEEEEcCccCCHHH-HHHH--Hh-hcCcCEEEEecCCHHHHHHhhc
Q 023790 152 DGYYRGEIGFILDGLPRSRIQ-AEIL--DQ-LAEIDLVVNFKCADNFIVTNRG 200 (277)
Q Consensus 152 ~~~~~~~~g~IldGfPrt~~q-ae~l--~~-~~~~d~vI~L~~~~e~l~~Rl~ 200 (277)
...-+|+|+--.-.-. -+.+ -+ ....-++|+++|+.|.+.+|-.
T Consensus 70 -----~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~ 117 (270)
T PF08433_consen 70 -----KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNS 117 (270)
T ss_dssp -----T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHH
T ss_pred -----cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhh
Confidence 2467888974322111 1222 22 2344579999999999999973
No 143
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=98.33 E-value=1.8e-05 Score=69.60 Aligned_cols=133 Identities=19% Similarity=0.276 Sum_probs=73.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh---CC--CccchhHHHHHhcCC---------CChhHHHHHHHHhccccchHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EV--PRISMSSIVRQDLSP---------RSSLHKQIANAVNRGEVVSEDI 141 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~---g~--~~Is~~dllr~~~~~---------~~~lg~~i~~~l~~G~~ip~~~ 141 (277)
..+..|+++|.|+.|||++|+.|+..+ |+ .+++.|+.=|+.... ..+.+..+++.+. ...
T Consensus 10 ~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a------~~~ 83 (222)
T PF01591_consen 10 AGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIA------KEA 83 (222)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHH------HHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHH------HHH
Confidence 467889999999999999999999765 33 578899888776543 1223333333211 112
Q ss_pred HHHHHHHHHHcCCccCccEEEEcCccCCHHHHHHHHhh---cC-cCEEEEecCCHHHHHHhh------------------
Q 023790 142 IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL---AE-IDLVVNFKCADNFIVTNR------------------ 199 (277)
Q Consensus 142 ~~~ll~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~~---~~-~d~vI~L~~~~e~l~~Rl------------------ 199 (277)
+..+ ...+.. ..+..-|+|+.-.|.+..+.+.+. .. .-++|..-|+++.++++-
T Consensus 84 l~dl-~~~l~~---~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~spDY~~~~~e~ 159 (222)
T PF01591_consen 84 LEDL-IEWLQE---EGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNSPDYKGMDPEE 159 (222)
T ss_dssp HHHH-HHHHHT---S--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSGGGTTS-HHH
T ss_pred HHHH-HHHHhc---CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCcccccCCHHH
Confidence 2222 234443 246678999988887766555432 12 224566667777777664
Q ss_pred -cchHHHHHHHHHHhchhHH
Q 023790 200 -GGSLKEKLEAYAELGKPLE 218 (277)
Q Consensus 200 -~~~~~~rl~~y~~~~~~l~ 218 (277)
.+.+.+|++.|+...+|+.
T Consensus 160 A~~Df~~RI~~Ye~~YEpl~ 179 (222)
T PF01591_consen 160 AIEDFKKRIEHYEKVYEPLD 179 (222)
T ss_dssp HHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHhhcccccccc
Confidence 1346789999999888886
No 144
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.30 E-value=2e-05 Score=67.18 Aligned_cols=157 Identities=12% Similarity=0.091 Sum_probs=86.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCCh--------hHHHHHHHHhccccchH--------H
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSS--------LHKQIANAVNRGEVVSE--------D 140 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~--------lg~~i~~~l~~G~~ip~--------~ 140 (277)
+++.++|.||+|+||||+++.|-+..++ ++|+..--|.. +++.. ..++..+.+.+|+.+.- -
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l-~~SVS~TTR~p-R~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYG 80 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKL-RFSVSATTRKP-RPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYG 80 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCe-EEEEEeccCCC-CCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCccc
Confidence 7899999999999999999999998844 34443333322 11111 12334444444443221 0
Q ss_pred HHHHHHHHHHHcCCccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHH-HHHHhh-------cchHHHHHHHHHH
Q 023790 141 IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADN-FIVTNR-------GGSLKEKLEAYAE 212 (277)
Q Consensus 141 ~~~~ll~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e-~l~~Rl-------~~~~~~rl~~y~~ 212 (277)
....-+...+.. +..+|+|=- ..-+..+.+..+....||+.+|.- .+.+|+ ++.+++|+...+.
T Consensus 81 T~~~~ve~~~~~-----G~~vildId---~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgtds~e~I~~Rl~~a~~ 152 (191)
T COG0194 81 TSREPVEQALAE-----GKDVILDID---VQGALQVKKKMPNAVSIFILPPSLEELERRLKGRGTDSEEVIARRLENAKK 152 (191)
T ss_pred CcHHHHHHHHhc-----CCeEEEEEe---hHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHccCCCCHHHHHHHHHHHHH
Confidence 111223333332 355666511 111233333223345666666654 566677 3467888887666
Q ss_pred hchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 213 LGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 213 ~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
..+.... | +. +.+ +.+.+...+++.+++...
T Consensus 153 Ei~~~~~-f---dy-viv--Ndd~e~a~~~l~~ii~ae 183 (191)
T COG0194 153 EISHADE-F---DY-VIV--NDDLEKALEELKSIILAE 183 (191)
T ss_pred HHHHHHh-C---CE-EEE--CccHHHHHHHHHHHHHHH
Confidence 6543332 3 22 333 467888899988888655
No 145
>PLN02165 adenylate isopentenyltransferase
Probab=98.29 E-value=9.6e-06 Score=75.28 Aligned_cols=37 Identities=11% Similarity=0.084 Sum_probs=34.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dl 112 (277)
.++.+|+|+||+|||||++|..||+.++..+|++|.+
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 5667899999999999999999999999999999876
No 146
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.26 E-value=9.4e-06 Score=75.77 Aligned_cols=104 Identities=21% Similarity=0.202 Sum_probs=62.0
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCC------CccchhHHHHHhcCC------CChhHHHHHHHHhccccchHHHHHHHHHH
Q 023790 81 WAFIGSPRAKKHVYAEMLSKLLEV------PRISMSSIVRQDLSP------RSSLHKQIANAVNRGEVVSEDIIFGLLSK 148 (277)
Q Consensus 81 Ivi~G~pGSGKSTla~~La~~~g~------~~Is~~dllr~~~~~------~~~lg~~i~~~l~~G~~ip~~~~~~ll~~ 148 (277)
++|+|+|||||||+++.|++++.. .+++.||++...... ....++.-+ ..+.+++..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R-----------~~i~~~le~ 70 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFR-----------QELLKYLEH 70 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHHH-----------HHHHHHHHH
Confidence 689999999999999999988763 489999998533221 011121111 233444443
Q ss_pred HHHcCCccCccEEEEcCccCCHHH---HHHHHhhcCcCEEEEecCCHHHHHHhhc
Q 023790 149 RLEDGYYRGEIGFILDGLPRSRIQ---AEILDQLAEIDLVVNFKCADNFIVTNRG 200 (277)
Q Consensus 149 ~l~~~~~~~~~g~IldGfPrt~~q---ae~l~~~~~~d~vI~L~~~~e~l~~Rl~ 200 (277)
.+.. .++|..+. .|-+..+ .+.+..+..-+++|+|+++.+....|+.
T Consensus 71 ~v~a----~~~g~~~~-~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi 120 (340)
T TIGR03575 71 FLVA----VINGSELS-APPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLT 120 (340)
T ss_pred HHHH----hcCccccc-CCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHh
Confidence 3332 24555554 2222111 1122222345689999999999999983
No 147
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.25 E-value=2.8e-05 Score=69.18 Aligned_cols=163 Identities=16% Similarity=0.193 Sum_probs=89.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCC------Chh-------HHHHHH----------HHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPR------SSL-------HKQIAN----------AVN 132 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~------~~l-------g~~i~~----------~l~ 132 (277)
++|.+|+|-|+||.||||+|..||.++|+.++-..|.+|+.+.+- +.+ ++.++. +.+
T Consensus 87 ~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF~d 166 (299)
T COG2074 87 KRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGFED 166 (299)
T ss_pred CCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhHHH
Confidence 568889999999999999999999999998765557777655321 011 111110 100
Q ss_pred ccccchHHHHHHHHHHHHHcCCccCccEEEEcCc---cCCHHHHHHHHhhcCcCEEEEecCCHH-HHHHhhcchH-----
Q 023790 133 RGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGL---PRSRIQAEILDQLAEIDLVVNFKCADN-FIVTNRGGSL----- 203 (277)
Q Consensus 133 ~G~~ip~~~~~~ll~~~l~~~~~~~~~g~IldGf---Prt~~qae~l~~~~~~d~vI~L~~~~e-~l~~Rl~~~~----- 203 (277)
+-+.+.. -+...+...+.+ +..+|++|. |.-.. -+.+ ....++++|.++++ ....|..++.
T Consensus 167 qa~~V~~-GI~~VI~RAi~e-----G~~lIIEGvHlVPg~i~-~~~~---~~n~~~~~l~i~dee~Hr~RF~~R~~~t~~ 236 (299)
T COG2074 167 QASAVMV-GIEAVIERAIEE-----GEDLIIEGVHLVPGLIK-EEAL---GNNVFMFMLYIADEELHRERFYDRIRYTHA 236 (299)
T ss_pred HhHHHHH-HHHHHHHHHHhc-----CcceEEEeeeecccccc-Hhhh---ccceEEEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 0000000 012334444443 466788874 22111 1222 12345666666555 4455663332
Q ss_pred ---HHHHHHHHHhchhHHHHHHh----cCcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 204 ---KEKLEAYAELGKPLEDYYQK----QKKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 204 ---~~rl~~y~~~~~~l~~~y~~----~~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
-.|+-.|..+...+.+|.-. .| +=.|+ +.++++..+++++.+.+.
T Consensus 237 ~rp~~Ryl~yf~EiR~I~Dyl~~~Are~g-VPvI~-n~di~etv~~il~~i~~~ 288 (299)
T COG2074 237 SRPGGRYLEYFKEIRTIHDYLVERAREHG-VPVIE-NDDIDETVDRILEDIRKR 288 (299)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHhcC-CCeec-cccHHHHHHHHHHHHHHH
Confidence 24455555555556665533 33 23344 567888888888877654
No 148
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.25 E-value=2.3e-06 Score=72.82 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=31.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh-----CCCccchhHHHHH
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQ 115 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~-----g~~~Is~~dllr~ 115 (277)
+|.|.|+|||||||+|+.|++.+ ++.+|++|+..+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~ 41 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVP 41 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccC
Confidence 47899999999999999999996 4578999998863
No 149
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.24 E-value=4.5e-05 Score=64.70 Aligned_cols=157 Identities=15% Similarity=0.102 Sum_probs=77.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCC----ccchhHHHHHhcCCCCh----hHHHHHHHHhccccchH--------HH
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP----RISMSSIVRQDLSPRSS----LHKQIANAVNRGEVVSE--------DI 141 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~----~Is~~dllr~~~~~~~~----lg~~i~~~l~~G~~ip~--------~~ 141 (277)
+..|+|+||+||||+|+++.|.+.+.-. .-.+..-.|.-...+.. -.+.....+..|+.+.- -+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt 81 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYGT 81 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhhh
Confidence 4568999999999999999999876421 11111111111011111 01222233333332210 01
Q ss_pred HHHHHHHHHHcCCccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCC-HHHHHHhhcc-------hHHHHHHHHHHh
Q 023790 142 IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCA-DNFIVTNRGG-------SLKEKLEAYAEL 213 (277)
Q Consensus 142 ~~~ll~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~-~e~l~~Rl~~-------~~~~rl~~y~~~ 213 (277)
...-+...+.+ +...|+|.-|.. +..|.....--.+||+..+ .+.+.+|+.. .+.+|+...+..
T Consensus 82 ~~~~i~~~~~~-----gk~~il~~~~~g---~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~~~~~~i~~r~~~~~~~ 153 (183)
T PF00625_consen 82 SKSAIDKVLEE-----GKHCILDVDPEG---VKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGDESEEEIEERLERAEKE 153 (183)
T ss_dssp EHHHHHHHHHT-----TTEEEEEETHHH---HHHHHHCTTTEEEEEEEESSHHHHHHHHHTTTHCHHHHHHHHHHHHHHH
T ss_pred ccchhhHhhhc-----CCcEEEEccHHH---HHHHHhcccCceEEEEEccchHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 12333333343 355677643332 3444433223368888776 5667777633 233444433322
Q ss_pred chhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 214 GKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 214 ~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
.. .+.+.+. +|. +.+.++++++|.++|+.
T Consensus 154 ~~----~~~~fd~--vi~-n~~le~~~~~l~~ii~~ 182 (183)
T PF00625_consen 154 FE----HYNEFDY--VIV-NDDLEEAVKELKEIIEQ 182 (183)
T ss_dssp HG----GGGGSSE--EEE-CSSHHHHHHHHHHHHHH
T ss_pred Hh----HhhcCCE--EEE-CcCHHHHHHHHHHHHHh
Confidence 21 1212232 333 35899999999999875
No 150
>PRK05439 pantothenate kinase; Provisional
Probab=98.19 E-value=1.8e-05 Score=72.97 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=32.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC-------CCccchhHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSIV 113 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g-------~~~Is~~dll 113 (277)
..+.+|.|.|+|||||||+|+.|++.++ +..|++|+.+
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 5778999999999999999999998664 4567887766
No 151
>PHA00729 NTP-binding motif containing protein
Probab=98.18 E-value=1.3e-05 Score=70.69 Aligned_cols=108 Identities=11% Similarity=0.018 Sum_probs=59.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCC--CccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCC
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV--PRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY 154 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~--~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~ 154 (277)
....|+|+|+||+||||+|..|+++++. ..+..++..... ......++.+-..+.+.......
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~--------------~~~~~fid~~~Ll~~L~~a~~~~- 80 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQY--------------VQNSYFFELPDALEKIQDAIDND- 80 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhc--------------CCcEEEEEHHHHHHHHHHHHhcC-
Confidence 3357999999999999999999998752 222222111111 01111233333344444433322
Q ss_pred ccCccEEEEcCcc---CCHH-HHH------HHHhh--cCcCEEEEecCCHHHHHHhhc
Q 023790 155 YRGEIGFILDGLP---RSRI-QAE------ILDQL--AEIDLVVNFKCADNFIVTNRG 200 (277)
Q Consensus 155 ~~~~~g~IldGfP---rt~~-qae------~l~~~--~~~d~vI~L~~~~e~l~~Rl~ 200 (277)
....-+|+|++- .... ..+ .+.+. ..+++++++.++++.+.+++.
T Consensus 81 -~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr 137 (226)
T PHA00729 81 -YRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLR 137 (226)
T ss_pred -CCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHH
Confidence 112336888731 1100 000 12222 257899999999999999983
No 152
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.14 E-value=2.9e-05 Score=76.96 Aligned_cols=191 Identities=17% Similarity=0.165 Sum_probs=95.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh-CCCccchhHHHHHh--cC--CCCh-------hHHHHHHHHhccccchHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQD--LS--PRSS-------LHKQIANAVNRGEVVSEDIIF 143 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~-g~~~Is~~dllr~~--~~--~~~~-------lg~~i~~~l~~G~~ip~~~~~ 143 (277)
.+..+|.|.|++||||||+|+.|+..+ +...|++|+..... .. ...+ +.+.+.. +.+|+.+.--. .
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~~~~~~i~~nfD~P~a~D~d~L~enL~~-Lr~GksV~iPi-Y 140 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYNDSSRIIDGNFDDPRLTDYDTLLDNIHD-LKAGKSVQVPI-Y 140 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcceecchhhhCccCCChhhcchhHHHHHHHH-HhCCCceecCc-c
Confidence 356789999999999999999999987 44577777642110 00 0000 0111111 12222110000 0
Q ss_pred HHH-HHHHHc--CCccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHH-HHHhhcch-------HHHHHHHHHH
Q 023790 144 GLL-SKRLED--GYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNF-IVTNRGGS-------LKEKLEAYAE 212 (277)
Q Consensus 144 ~ll-~~~l~~--~~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~-l~~Rl~~~-------~~~rl~~y~~ 212 (277)
..- ..+... .......-+|++|+.--. +.+. ...|+.||++++.+. +.+|+... .+.-+..|.+
T Consensus 141 Df~t~~r~~~~~i~v~p~~VVIVEGIyaL~---~~Lr--~LlDlkIFVDtdvDirL~RRI~RD~~eRGrs~EsVi~q~~~ 215 (656)
T PLN02318 141 DFKSSSRVGYRTLEVPSSRIVIIEGIYALS---EKLR--PLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISE 215 (656)
T ss_pred ccccCcccCCceeecCCCcEEEEechhhcc---HhHH--hhCCEEEEEcCCccHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 000 000000 001123456788864322 2222 235899999977554 44555322 2344567777
Q ss_pred hchhHHHHHHhcC---cEEEEeC-------CCC--------HHHHHHHHHHHHHHcc-----------ccccCCchhhhh
Q 023790 213 LGKPLEDYYQKQK---KLLEFQV-------GSA--------PLETWQGLLTALHLQH-----------INAAYSSQELMK 263 (277)
Q Consensus 213 ~~~~l~~~y~~~~---~li~Ida-------~~s--------~eev~~~I~~~L~~~~-----------~~~~~~~~~~~~ 263 (277)
...|....|-+.. .-+.|+. ..+ .+-+.++|...|.++. +++.+-.. ..
T Consensus 216 ~VkP~y~~FIeP~kk~ADIII~n~f~P~~g~~np~~Ilk~~~~~~~~~i~~~L~~~~~~~~~~~~DiYl~~P~~d~--~~ 293 (656)
T PLN02318 216 TVYPMYKAFIEPDLQTAHIKIVNKFNPFSGFQNPTYILKSSRSVTVEQIKAVLSEDHTETTEETYDIYLLPPGEDP--ET 293 (656)
T ss_pred hhcchHHHHhCcchhcceEEEecCCCCCCCCCCCeEEecCCccccHHHHHHHhhhccccccceeeEEEecCCCCCc--hh
Confidence 7777777664421 1122211 111 2557788888887653 22233222 23
Q ss_pred hhcccceecccc
Q 023790 264 RSHLLRLKVTNF 275 (277)
Q Consensus 264 ~~~~~~~~~~~~ 275 (277)
...-+|+|+...
T Consensus 294 ~~e~LRvR~~~G 305 (656)
T PLN02318 294 CQSYLRMRNRDG 305 (656)
T ss_pred ccceEEEEecCC
Confidence 366688887653
No 153
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.14 E-value=1.9e-05 Score=69.55 Aligned_cols=28 Identities=36% Similarity=0.478 Sum_probs=25.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g 103 (277)
.++.+|.|.|++||||||+++.|+..+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4788999999999999999999998763
No 154
>PRK07429 phosphoribulokinase; Provisional
Probab=98.14 E-value=4.9e-06 Score=77.42 Aligned_cols=38 Identities=24% Similarity=0.257 Sum_probs=32.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC---CCccchhHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE---VPRISMSSIV 113 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g---~~~Is~~dll 113 (277)
.++.+|.|.|++||||||+++.|++.++ +..+.+|+..
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~ 46 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH 46 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence 5788999999999999999999999987 5567777753
No 155
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.09 E-value=2.4e-05 Score=68.78 Aligned_cols=34 Identities=26% Similarity=0.285 Sum_probs=27.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC-------CCccchhHHH
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSIV 113 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~g-------~~~Is~~dll 113 (277)
+|.|.|++||||||+|+.|+..+. +.+|++|+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 367999999999999999999873 3457777664
No 156
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=98.09 E-value=0.0002 Score=63.98 Aligned_cols=136 Identities=21% Similarity=0.152 Sum_probs=79.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCccCc
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (277)
..|+|.|.+|||||+-.+.|.. +|+-+++- +|.+++-+++.-......-...
T Consensus 2 ~lvIVTGlSGAGKsvAl~~lED-lGyycvDN---------------------------LPp~Llp~~~~~~~~~~~~~~k 53 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVLED-LGYYCVDN---------------------------LPPQLLPKLADLMLTLESRITK 53 (286)
T ss_pred cEEEEecCCCCcHHHHHHHHHh-cCeeeecC---------------------------CCHHHHHHHHHHHhhcccCCce
Confidence 4689999999999998888854 56544321 2333333343311111100124
Q ss_pred cEEEEcCccCCHHHHHHHH----hhc---CcC-EEEEecCCHHHHHHhhcc-----------hHHHHHHHHHHhchhHHH
Q 023790 159 IGFILDGLPRSRIQAEILD----QLA---EID-LVVNFKCADNFIVTNRGG-----------SLKEKLEAYAELGKPLED 219 (277)
Q Consensus 159 ~g~IldGfPrt~~qae~l~----~~~---~~d-~vI~L~~~~e~l~~Rl~~-----------~~~~rl~~y~~~~~~l~~ 219 (277)
-.+++|= |+......++ .+. ..+ .++||+++++++++|..+ .+..-++.-++...|+.+
T Consensus 54 vAv~iDi--Rs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~~I~~ERelL~pLk~ 131 (286)
T COG1660 54 VAVVIDV--RSREFFGDLEEVLDELKDNGDIDPRVLFLEADDETLVRRYSETRRSHPLSEDGLLLEAIAKERELLAPLRE 131 (286)
T ss_pred EEEEEec--ccchhHHHHHHHHHHHHhcCCCCceEEEEECchhHHHHHHhhhhhcCCCCccCcHHHHHHHHHHHHHHHHH
Confidence 4567772 3333332222 221 222 599999999999999832 233444444444455544
Q ss_pred HHHhcCcEEEEeC-CCCHHHHHHHHHHHHHH
Q 023790 220 YYQKQKKLLEFQV-GSAPLETWQGLLTALHL 249 (277)
Q Consensus 220 ~y~~~~~li~Ida-~~s~eev~~~I~~~L~~ 249 (277)
.- + ++||+ +.++.++-+.|...+..
T Consensus 132 ~A---~--~vIDTs~ls~~~Lr~~i~~~f~~ 157 (286)
T COG1660 132 IA---D--LVIDTSELSVHELRERIRTRFLG 157 (286)
T ss_pred Hh---h--hEeecccCCHHHHHHHHHHHHcc
Confidence 32 2 34565 68999999999988874
No 157
>COG4639 Predicted kinase [General function prediction only]
Probab=98.08 E-value=5.1e-05 Score=62.86 Aligned_cols=108 Identities=16% Similarity=0.130 Sum_probs=64.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccc-cchHHHHHHHHHHHHHcCCcc
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGE-VVSEDIIFGLLSKRLEDGYYR 156 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~-~ip~~~~~~ll~~~l~~~~~~ 156 (277)
...++++|+|||||||.|+..- .....++.+++=+. + |....+...+|. ..--++....++.++..
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~--~~~~~lsld~~r~~-l------g~~~~~e~sqk~~~~~~~~l~~~l~qrl~~---- 68 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENF--LQNYVLSLDDLRLL-L------GVSASKENSQKNDELVWDILYKQLEQRLRR---- 68 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhC--CCcceecHHHHHHH-h------hhchhhhhccccHHHHHHHHHHHHHHHHHc----
Confidence 3568999999999999998643 35667777665332 1 110111111110 00123344555555554
Q ss_pred CccEEEEcCccCCHHHHHHHHhh----cCcCEEEEecCCHHHHHHhh
Q 023790 157 GEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNR 199 (277)
Q Consensus 157 ~~~g~IldGfPrt~~qae~l~~~----~~~d~vI~L~~~~e~l~~Rl 199 (277)
++-.|+|..-...++...+-.+ .-...+|+|+.|.+.|.+|.
T Consensus 69 -Gk~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRN 114 (168)
T COG4639 69 -GKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARN 114 (168)
T ss_pred -CCeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHh
Confidence 5678999875444444433322 23357899999999999996
No 158
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.06 E-value=4.5e-05 Score=69.79 Aligned_cols=38 Identities=24% Similarity=0.247 Sum_probs=29.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC-------CCccchhHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSIV 113 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g-------~~~Is~~dll 113 (277)
+.+.+|.|.|++||||||+|+.|+..+. +..+++|+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 5778999999999999999998877653 3456666544
No 159
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.03 E-value=3.1e-06 Score=71.55 Aligned_cols=35 Identities=26% Similarity=0.267 Sum_probs=28.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhC--CCccchhHH
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLE--VPRISMSSI 112 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g--~~~Is~~dl 112 (277)
+++|+|+|+|||||||+|..+++.++ +.++.++..
T Consensus 1 ~~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~ 37 (170)
T PRK05800 1 GMLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQP 37 (170)
T ss_pred CCEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCC
Confidence 35799999999999999999999987 456666543
No 160
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.99 E-value=3.4e-05 Score=66.12 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=22.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~g 103 (277)
+|.|.|++||||||+|+.|+..++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999997
No 161
>PLN02772 guanylate kinase
Probab=97.97 E-value=0.00011 Score=69.64 Aligned_cols=161 Identities=11% Similarity=0.078 Sum_probs=81.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCC-CccchhHHHHHhcC---CCChh----HHHHHHHHhccccchH--------
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV-PRISMSSIVRQDLS---PRSSL----HKQIANAVNRGEVVSE-------- 139 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~-~~Is~~dllr~~~~---~~~~l----g~~i~~~l~~G~~ip~-------- 139 (277)
...+.|+|+||+|+||+|+.++|.+.+.. ..+.....=|..-. .+... -+.....+.+|+.+.-
T Consensus 133 ~~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~Y 212 (398)
T PLN02772 133 NAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLY 212 (398)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCccc
Confidence 35678999999999999999999886521 11111111111100 01000 0223333333332210
Q ss_pred HHHHHHHHHHHHcCCccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEe--cCCHHHHHHhh-------cchHHHHHHHH
Q 023790 140 DIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNF--KCADNFIVTNR-------GGSLKEKLEAY 210 (277)
Q Consensus 140 ~~~~~ll~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L--~~~~e~l~~Rl-------~~~~~~rl~~y 210 (277)
-+-.+.+...+.+ +..+|+|=-|... ..+.+.. ++.++.+ .-+.+++.+|+ ++.+++|++.+
T Consensus 213 GTsk~~V~~vl~~-----Gk~vILdLD~qGa---r~Lr~~~-l~~v~IFI~PPSlEeLe~RL~~RGteseE~I~kRL~~A 283 (398)
T PLN02772 213 GTSIEAVEVVTDS-----GKRCILDIDVQGA---RSVRASS-LEAIFIFICPPSMEELEKRLRARGTETEEQIQKRLRNA 283 (398)
T ss_pred cccHHHHHHHHHh-----CCcEEEeCCHHHH---HHHHHhc-CCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 0112233333332 3556666333322 2232221 2333333 33478999998 34678888877
Q ss_pred HHhchhHH--HHHHhcCcEEEEeCCCCHHHHHHHHHHHHHHcc
Q 023790 211 AELGKPLE--DYYQKQKKLLEFQVGSAPLETWQGLLTALHLQH 251 (277)
Q Consensus 211 ~~~~~~l~--~~y~~~~~li~Ida~~s~eev~~~I~~~L~~~~ 251 (277)
+...+... .+| + .+.+| .++++.++++.++|...+
T Consensus 284 ~~Ei~~~~~~~~f---D-~vIvN--DdLe~A~~~L~~iL~~~~ 320 (398)
T PLN02772 284 EAELEQGKSSGIF---D-HILYN--DNLEECYKNLKKLLGLDG 320 (398)
T ss_pred HHHHhhccccCCC---C-EEEEC--CCHHHHHHHHHHHHhhcC
Confidence 54332110 112 1 23333 389999999999998765
No 162
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.86 E-value=9.5e-06 Score=64.01 Aligned_cols=33 Identities=27% Similarity=0.390 Sum_probs=27.5
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCcc--chhHHH
Q 023790 81 WAFIGSPRAKKHVYAEMLSKLLEVPRI--SMSSIV 113 (277)
Q Consensus 81 Ivi~G~pGSGKSTla~~La~~~g~~~I--s~~dll 113 (277)
|+|.||||+|||++++.+++.++.+++ +.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~ 35 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELI 35 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccc
Confidence 689999999999999999999997664 444444
No 163
>PRK06761 hypothetical protein; Provisional
Probab=97.83 E-value=0.00028 Score=64.31 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=27.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
++.|+|.|+|||||||+++.|+++++...++.
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v 34 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEV 34 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEE
Confidence 56899999999999999999999987654444
No 164
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.80 E-value=0.00011 Score=66.76 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=27.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh---CCCccchhHHH
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIV 113 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~---g~~~Is~~dll 113 (277)
+|.|.|++||||||+++.|+..+ +..++.+|++.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~ 37 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH 37 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence 37899999999999999999876 45577777654
No 165
>PLN02348 phosphoribulokinase
Probab=97.77 E-value=5.8e-05 Score=71.47 Aligned_cols=28 Identities=11% Similarity=0.162 Sum_probs=26.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g 103 (277)
.++.+|.|.|++||||||+|+.|++.+|
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4778899999999999999999999986
No 166
>PRK15453 phosphoribulokinase; Provisional
Probab=97.76 E-value=0.00011 Score=66.87 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=31.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC-----CCccchhHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVR 114 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g-----~~~Is~~dllr 114 (277)
+++++|.|.|.|||||||+|+.|++.++ ..+|+.|+..+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 5778999999999999999999998774 34566665543
No 167
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=97.74 E-value=0.0016 Score=54.60 Aligned_cols=59 Identities=17% Similarity=0.212 Sum_probs=43.2
Q ss_pred EEEEecCCHHHHHHhhcc-------hHHHHHHHHHHhchhHHHHHHh-cCcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 184 LVVNFKCADNFIVTNRGG-------SLKEKLEAYAELGKPLEDYYQK-QKKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 184 ~vI~L~~~~e~l~~Rl~~-------~~~~rl~~y~~~~~~l~~~y~~-~~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
++|++.++++++.+|+.+ .+..|+..-. .|.. .+-+..||.++.++...++++..|.+.
T Consensus 117 lvv~ita~p~VLaqRL~~RGREs~eeI~aRL~R~a--------~~~~~~~dv~~idNsG~l~~ag~~ll~~l~~~ 183 (192)
T COG3709 117 LVVCITASPEVLAQRLAERGRESREEILARLARAA--------RYTAGPGDVTTIDNSGELEDAGERLLALLHQD 183 (192)
T ss_pred eeEEEecCHHHHHHHHHHhccCCHHHHHHHHHhhc--------ccccCCCCeEEEcCCCcHHHHHHHHHHHHHhh
Confidence 699999999999999943 3445553211 1221 245889999999999999999988854
No 168
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.73 E-value=0.00026 Score=67.82 Aligned_cols=93 Identities=15% Similarity=0.128 Sum_probs=53.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh----CC-CccchhHHHHHhcCCCChhHHHHHHHHhcccc--chHHHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL----EV-PRISMSSIVRQDLSPRSSLHKQIANAVNRGEV--VSEDIIFGLLSKR 149 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~----g~-~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~--ip~~~~~~ll~~~ 149 (277)
++.+++|+|++||||||++..||..+ |. .++...|..|... ..+++.+...... .+.... ..+...
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA------~eQLk~yAe~lgvp~~~~~~~-~~l~~~ 294 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAA------IEQLKRYADTMGMPFYPVKDI-KKFKET 294 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhH------HHHHHHHHHhcCCCeeehHHH-HHHHHH
Confidence 46789999999999999999999865 21 2233335554321 1223333332221 111112 223333
Q ss_pred HHcCCccCccEEEEc--Ccc-CCHHHHHHHHhh
Q 023790 150 LEDGYYRGEIGFILD--GLP-RSRIQAEILDQL 179 (277)
Q Consensus 150 l~~~~~~~~~g~Ild--GfP-rt~~qae~l~~~ 179 (277)
+.. .....+||| |++ ++..+++.|.++
T Consensus 295 l~~---~~~D~VLIDTaGr~~rd~~~l~eL~~~ 324 (432)
T PRK12724 295 LAR---DGSELILIDTAGYSHRNLEQLERMQSF 324 (432)
T ss_pred HHh---CCCCEEEEeCCCCCccCHHHHHHHHHH
Confidence 432 235679999 775 677788777654
No 169
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.71 E-value=0.00027 Score=63.50 Aligned_cols=27 Identities=33% Similarity=0.570 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.....++|.||||+||||+|+.+++.+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 356779999999999999999999875
No 170
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=97.65 E-value=0.00037 Score=59.14 Aligned_cols=113 Identities=16% Similarity=0.094 Sum_probs=56.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCC----h---hHHHH--HHH---Hhcc-------ccchHH
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRS----S---LHKQI--ANA---VNRG-------EVVSED 140 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~----~---lg~~i--~~~---l~~G-------~~ip~~ 140 (277)
+|.|.|..|||++++|+.||+++|+++++- +++.+...... . ..+.. ... +..+ .....+
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD 79 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence 589999999999999999999999999998 77766543210 0 00110 111 1111 111223
Q ss_pred HHHHHHHHHHHcCCccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhc
Q 023790 141 IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG 200 (277)
Q Consensus 141 ~~~~ll~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~ 200 (277)
.+.....+.+.+. ....++|+.|. . +..+-+-.+..+-|+|.+|.+..++|+.
T Consensus 80 ~~~~~~~~~i~~l--a~~~~~Vi~GR--~---a~~il~~~~~~l~V~i~A~~~~Rv~ri~ 132 (179)
T PF13189_consen 80 KIFRAQSEIIREL--AAKGNCVIVGR--C---ANYILRDIPNVLHVFIYAPLEFRVERIM 132 (179)
T ss_dssp HHHHHHHHHHHHH--HH---EEEEST--T---HHHHTTT-TTEEEEEEEE-HHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hccCCEEEEec--C---HhhhhCCCCCeEEEEEECCHHHHHHHHH
Confidence 3333322222222 11345666664 1 1222211223579999999999999983
No 171
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00027 Score=69.82 Aligned_cols=140 Identities=16% Similarity=0.173 Sum_probs=80.4
Q ss_pred ccchHhhhccccccCC---CCCCccCCCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchh--HHHHHhcCCCChhHHHH
Q 023790 53 SDSDQHRDSLRSVTLP---DTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQDLSPRSSLHKQI 127 (277)
Q Consensus 53 ~~~~~l~~~~~~~~~~---~~~~~~~~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~--dllr~~~~~~~~lg~~i 127 (277)
..|.+|.+.+.++-.. ..-|-.|.++ |++.||||||||.+|+.+|.++|++++++. +++... ..+-.+.|
T Consensus 197 ~~~~el~~li~~i~~Pe~~~~lGv~PprG--vLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv---SGESEkki 271 (802)
T KOG0733|consen 197 KTLAELCELIIHIKHPEVFSSLGVRPPRG--VLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV---SGESEKKI 271 (802)
T ss_pred HHHHHHHHHHHHhcCchhHhhcCCCCCCc--eeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc---CcccHHHH
Confidence 3466666654332111 1112234444 889999999999999999999999987763 444321 12223455
Q ss_pred HHHHhcccc--------------------chHHHHHHHHHHHHHcCC---c--cCccEEEEcC---ccCCHHHHHHHHhh
Q 023790 128 ANAVNRGEV--------------------VSEDIIFGLLSKRLEDGY---Y--RGEIGFILDG---LPRSRIQAEILDQL 179 (277)
Q Consensus 128 ~~~l~~G~~--------------------ip~~~~~~ll~~~l~~~~---~--~~~~g~IldG---fPrt~~qae~l~~~ 179 (277)
++.+..... ...++..+++...+..-+ . ..+.++++-| -|...+ ..|.+.
T Consensus 272 RelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslD--paLRRa 349 (802)
T KOG0733|consen 272 RELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLD--PALRRA 349 (802)
T ss_pred HHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccC--HHHhcc
Confidence 555543221 112333444443333211 1 1245566544 343332 345556
Q ss_pred cCcCEEEEecCCHHHHHHhh
Q 023790 180 AEIDLVVNFKCADNFIVTNR 199 (277)
Q Consensus 180 ~~~d~vI~L~~~~e~l~~Rl 199 (277)
..+|.=|.|.+|.++..+++
T Consensus 350 GRFdrEI~l~vP~e~aR~~I 369 (802)
T KOG0733|consen 350 GRFDREICLGVPSETAREEI 369 (802)
T ss_pred ccccceeeecCCchHHHHHH
Confidence 77889999999999888876
No 172
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.64 E-value=4.5e-05 Score=70.40 Aligned_cols=36 Identities=25% Similarity=0.210 Sum_probs=32.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dl 112 (277)
+++.|+|+||+|||||++|..|+++++..+|+.|.+
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 567899999999999999999999999999988773
No 173
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=97.62 E-value=0.00029 Score=71.60 Aligned_cols=33 Identities=12% Similarity=0.191 Sum_probs=27.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
....|+++|.||+||||+|+.|++.+++..+++
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~ 246 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQS 246 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHhcCCCc
Confidence 456799999999999999999999986655544
No 174
>PRK09169 hypothetical protein; Validated
Probab=97.62 E-value=0.00015 Score=79.96 Aligned_cols=106 Identities=12% Similarity=0.020 Sum_probs=75.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCcc
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (277)
....|+++|.+|+||||+++.|+++++..+++++..+.+.. ++.|.+++...+ .+.+...+.|.+.+. .
T Consensus 2109 ~~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks~------GrkI~rIFa~eG-~FRe~Eaa~V~Dllr-~--- 2177 (2316)
T PRK09169 2109 GAQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKKI------GKKIARIQALRG-LSPEQAAARVRDALR-W--- 2177 (2316)
T ss_pred hhcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHHh------CCCHHHHHHhcC-chHHHHHHHHHHHhc-C---
Confidence 44679999999999999999999999999999998887653 555666665333 777777777776554 1
Q ss_pred CccEEEE--cCc-cCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhh
Q 023790 157 GEIGFIL--DGL-PRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR 199 (277)
Q Consensus 157 ~~~g~Il--dGf-Prt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl 199 (277)
..|| .|+ +........|. .-+++|++..+.+++.+|+
T Consensus 2178 ---~vVLSTGGGav~~~enr~~L~---~~GlvV~L~an~~tl~~Rt 2217 (2316)
T PRK09169 2178 ---EVVLPAEGFGAAVEQARQALG---AKGLRVMRINNGFAAPDTT 2217 (2316)
T ss_pred ---CeEEeCCCCcccCHHHHHHHH---HCCEEEEEECCHHHHHHHh
Confidence 1233 222 22222223333 3568999999999999998
No 175
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=97.55 E-value=0.00059 Score=56.50 Aligned_cols=160 Identities=18% Similarity=0.165 Sum_probs=88.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh---C-CCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---E-VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLE 151 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~---g-~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~ 151 (277)
.++..|+|.|.+||||||+|-.|.+.+ | ..++--||-+|.-++. .++-...+- .+.+ -.+.-+.+...
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~--DL~F~a~dR---~ENI---RRigeVaKLFA 100 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNK--DLGFKAEDR---NENI---RRIGEVAKLFA 100 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccccccccc--ccCcchhhh---hhhH---HHHHHHHHHHh
Confidence 688999999999999999999999876 2 2344444555544432 222111110 0000 00111222222
Q ss_pred cCCccCccEE-----EEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcchHHHH-----HHHHHHhchhHHHHH
Q 023790 152 DGYYRGEIGF-----ILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLKEK-----LEAYAELGKPLEDYY 221 (277)
Q Consensus 152 ~~~~~~~~g~-----IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~~~~r-----l~~y~~~~~~l~~~y 221 (277)
. .|+ +|.-|-....++..|..- ..-+-||.++|.+++..|-+.-+-++ ++.|-. +.+-|
T Consensus 101 D------ag~iciaSlISPYR~dRdacRel~~~-~~FiEvfmdvpl~vcE~RDPKGLYK~ARaGkIKgFTG----IddPY 169 (207)
T KOG0635|consen 101 D------AGVICIASLISPYRKDRDACRELLPE-GDFIEVFMDVPLEVCEARDPKGLYKLARAGKIKGFTG----IDDPY 169 (207)
T ss_pred c------cceeeeehhcCchhccHHHHHHhccC-CCeEEEEecCcHHHhhccCchhHHHHHhccccccccc----CCCcc
Confidence 1 222 234344455555555321 22357899999999999986543222 122222 33334
Q ss_pred Hhc-C--cEEEEeCCCCHHHHHHHHHHHHHHccccc
Q 023790 222 QKQ-K--KLLEFQVGSAPLETWQGLLTALHLQHINA 254 (277)
Q Consensus 222 ~~~-~--~li~Ida~~s~eev~~~I~~~L~~~~~~~ 254 (277)
+.. + .++.-+...+|++.++.|...|..+++..
T Consensus 170 EaP~~cEi~l~~~~~~sp~~mae~iv~YL~~kg~l~ 205 (207)
T KOG0635|consen 170 EAPLNCEIVLKSHESSSPEEMAEIIVSYLDNKGYLQ 205 (207)
T ss_pred cCCCCcEEEEccCCCCCHHHHHHHHHHHHhhcChhc
Confidence 432 2 23333445678889999999999887643
No 176
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.55 E-value=0.00013 Score=63.67 Aligned_cols=113 Identities=18% Similarity=0.151 Sum_probs=57.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHH-hcCCCC--hhHHH---------HHHHHhccccchHHHHHHH
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQ-DLSPRS--SLHKQ---------IANAVNRGEVVSEDIIFGL 145 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~-~~~~~~--~lg~~---------i~~~l~~G~~ip~~~~~~l 145 (277)
+.+++|.||+|+|||.+|-.||+++|.++|+.|.+..- .+..++ +...+ -...+..|. ++.+...+.
T Consensus 1 M~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~~ 79 (233)
T PF01745_consen 1 MKVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHER 79 (233)
T ss_dssp -EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHHH
T ss_pred CcEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHHHH
Confidence 35689999999999999999999999999999754321 222111 10000 012245565 444556666
Q ss_pred HHHHHHcCCccCccEEEEcCccCCHHHHHHHHh--hc-Cc--CEEEEecCCHHHH
Q 023790 146 LSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQ--LA-EI--DLVVNFKCADNFI 195 (277)
Q Consensus 146 l~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~--~~-~~--d~vI~L~~~~e~l 195 (277)
+..++.... ..+++|++|-.-++. ..|.+ .. .+ -.+..+.++++..
T Consensus 80 Li~~v~~~~--~~~~~IlEGGSISLl--~~m~~~~~w~~~f~w~i~rl~l~d~~~ 130 (233)
T PF01745_consen 80 LISEVNSYS--AHGGLILEGGSISLL--NCMAQDPYWSLDFRWHIRRLRLPDEEV 130 (233)
T ss_dssp HHHHHHTTT--TSSEEEEEE--HHHH--HHHHH-TTTSSSSEEEEEE-----HHH
T ss_pred HHHHHHhcc--ccCceEEeCchHHHH--HHHHhcccccCCCeEEEEEEECCChHH
Confidence 667777763 478999998754432 22221 11 11 2577778877643
No 177
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.54 E-value=4.6e-05 Score=63.27 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCCcc
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~g~~~I 107 (277)
+|+|+|+||+||||+++.|++. |++++
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 5899999999999999999999 88876
No 178
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.53 E-value=0.0003 Score=55.60 Aligned_cols=82 Identities=17% Similarity=0.169 Sum_probs=43.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh--------CCCcc--chhHHHHHhcCCCChhHHHHHHHHhccccc--hHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL--------EVPRI--SMSSIVRQDLSPRSSLHKQIANAVNRGEVV--SEDIIFG 144 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~--------g~~~I--s~~dllr~~~~~~~~lg~~i~~~l~~G~~i--p~~~~~~ 144 (277)
+...++|.|+||+|||++++.+++.+ ....+ +....- ....+...+.+.+...... +.+...+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~l~~~~~~~~~~~~l~~ 77 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR-----TPRDFAQEILEALGLPLKSRQTSDELRS 77 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS-----SHHHHHHHHHHHHT-SSSSTS-HHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC-----CHHHHHHHHHHHhCccccccCCHHHHHH
Confidence 45678999999999999999999976 33332 221111 1123444455554433222 2333446
Q ss_pred HHHHHHHcCCccCccEEEEcCc
Q 023790 145 LLSKRLEDGYYRGEIGFILDGL 166 (277)
Q Consensus 145 ll~~~l~~~~~~~~~g~IldGf 166 (277)
.+.+.+.... ..-+|||.+
T Consensus 78 ~~~~~l~~~~---~~~lviDe~ 96 (131)
T PF13401_consen 78 LLIDALDRRR---VVLLVIDEA 96 (131)
T ss_dssp HHHHHHHHCT---EEEEEEETT
T ss_pred HHHHHHHhcC---CeEEEEeCh
Confidence 6666666541 245778875
No 179
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.52 E-value=8e-05 Score=57.93 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=24.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCC
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~ 105 (277)
+..++|.|||||||||+++.|+..++..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 4578999999999999999999987654
No 180
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.49 E-value=0.00011 Score=61.43 Aligned_cols=43 Identities=9% Similarity=0.192 Sum_probs=32.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcC
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS 118 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~ 118 (277)
+..++|+|.|+||+||||++..+++.+.-.-+..+-++..+..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR 45 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR 45 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence 4679999999999999999999999875443444444444443
No 181
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=97.48 E-value=0.00011 Score=64.62 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=32.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCc-cchhHHHHHhc
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPR-ISMSSIVRQDL 117 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~-Is~~dllr~~~ 117 (277)
|+|.|.|.|||||||+|+.+.+. |.++ +++++-++..+
T Consensus 1 miI~i~G~~gsGKstva~~~~~~-g~~~~~~~~d~ik~~l 39 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIEN-YNAVKYQLADPIKEIL 39 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHhc-CCcEEEehhHHHHHHH
Confidence 57999999999999999999776 5555 99999998765
No 182
>CHL00181 cbbX CbbX; Provisional
Probab=97.44 E-value=0.00047 Score=63.06 Aligned_cols=27 Identities=33% Similarity=0.573 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+..++|.|+||+||||+|+.+++.+
T Consensus 57 ~~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 57 NPGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 457779999999999999999999875
No 183
>PLN02840 tRNA dimethylallyltransferase
Probab=97.42 E-value=0.00012 Score=70.15 Aligned_cols=36 Identities=28% Similarity=0.163 Sum_probs=32.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~d 111 (277)
.+++.|+|.||+||||||++..|+++++..+|+.|.
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds 54 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRLNGEIISADS 54 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence 455689999999999999999999999988888865
No 184
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=97.41 E-value=0.00065 Score=58.61 Aligned_cols=117 Identities=14% Similarity=0.102 Sum_probs=70.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh-CCCccchhHHHHHhcC--C--C-------------ChhHHHHHHHHhccccch
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQDLS--P--R-------------SSLHKQIANAVNRGEVVS 138 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~-g~~~Is~~dllr~~~~--~--~-------------~~lg~~i~~~l~~G~~ip 138 (277)
+..+|-|.|...|||||+|+.|.+.+ |+..|+-||.+..+.. . + ..+.+.+...+.+....|
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~ 82 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAP 82 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccc
Confidence 44678889999999999999999988 6778888877654321 0 0 012344555555544443
Q ss_pred HHHHHHHHHH-----HHHcCC--ccCccEEEEcCccCC--HHHHHHHHhhcCcCEEEEecCCHHHHHHhhc
Q 023790 139 EDIIFGLLSK-----RLEDGY--YRGEIGFILDGLPRS--RIQAEILDQLAEIDLVVNFKCADNFIVTNRG 200 (277)
Q Consensus 139 ~~~~~~ll~~-----~l~~~~--~~~~~g~IldGfPrt--~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~ 200 (277)
+ -...+|.. ..++.. .....-+|+|||-.. ..|.. ..|..|++..|-+++.+|-+
T Consensus 83 ~-ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p~~~------~~d~~im~~~~y~~~krRr~ 146 (225)
T KOG3308|consen 83 E-AREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKPQVD------LFDRIIMLTLDYETCKRRRE 146 (225)
T ss_pred h-HhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecchhhh------hhhhheeeeccHHHHHHhhc
Confidence 2 11111211 111111 123455889998532 11222 35678999999999999974
No 185
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.35 E-value=0.002 Score=58.30 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=28.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC-----CCccchhHHHH
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVR 114 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~g-----~~~Is~~dllr 114 (277)
+|.|.|++||||||+++.|++.++ +.+|+.|+..+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 378999999999999999998774 45677776665
No 186
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.35 E-value=0.00014 Score=58.46 Aligned_cols=27 Identities=33% Similarity=0.465 Sum_probs=24.6
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCcc
Q 023790 81 WAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (277)
Q Consensus 81 Ivi~G~pGSGKSTla~~La~~~g~~~I 107 (277)
|+|.|+||+|||++++.+++.++.+++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~ 28 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVI 28 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceE
Confidence 789999999999999999999987653
No 187
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.34 E-value=0.00013 Score=68.48 Aligned_cols=28 Identities=25% Similarity=0.220 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~ 104 (277)
+...++|.|||||||||+|+.|++.++.
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 5677899999999999999999998865
No 188
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.34 E-value=0.00016 Score=69.20 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=31.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~d 111 (277)
.+..|+|+||||+|||++|+.||+.++.+++.++.
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vda 80 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 80 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence 55779999999999999999999999999888863
No 189
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.33 E-value=0.00037 Score=62.02 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=19.8
Q ss_pred EEcCCCCChHHHHHHHHHHhCCC
Q 023790 83 FIGSPRAKKHVYAEMLSKLLEVP 105 (277)
Q Consensus 83 i~G~pGSGKSTla~~La~~~g~~ 105 (277)
|+||+||||||.|+.+.+++...
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~ 23 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESN 23 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999988543
No 190
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.33 E-value=0.00018 Score=63.41 Aligned_cols=30 Identities=27% Similarity=0.275 Sum_probs=24.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCcc
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~I 107 (277)
...+++.||||.||||+|..+|+.+|..+.
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~ 79 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGVNFK 79 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred cceEEEECCCccchhHHHHHHHhccCCCeE
Confidence 456999999999999999999999988654
No 191
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.32 E-value=0.00057 Score=61.51 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=26.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCcc
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~I 107 (277)
+..++|.|+||+|||++|+.|++.+|.+++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 345889999999999999999999988765
No 192
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.31 E-value=0.00047 Score=66.01 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=31.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~d 111 (277)
.+..|+|+||||+|||++|+.||+.++.+++.++.
T Consensus 49 ~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence 45789999999999999999999999998888763
No 193
>PLN02748 tRNA dimethylallyltransferase
Probab=97.30 E-value=0.00021 Score=69.38 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=33.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~d 111 (277)
.++.+|+|+||+|||||++|..||++++..+|+.|.
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds 55 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS 55 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence 466789999999999999999999999999999874
No 194
>PRK12377 putative replication protein; Provisional
Probab=97.30 E-value=0.0048 Score=55.29 Aligned_cols=107 Identities=14% Similarity=0.225 Sum_probs=62.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh---CC--CccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcC
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLL---EV--PRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDG 153 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~---g~--~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~ 153 (277)
..++|.|+||+|||++|..+++.+ |. .++++.+++.. ++.....+.. ..+++ +.+.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~-----------l~~~~~~~~~-----~~~~l-~~l~-- 162 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR-----------LHESYDNGQS-----GEKFL-QELC-- 162 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH-----------HHHHHhccch-----HHHHH-HHhc--
Confidence 468999999999999999999876 33 45666666653 2222222211 11222 2222
Q ss_pred CccCccEEEEcCc---cCCHHHHHHHHhhc------CcCEEEEecCCHHHHHHhhcchHHHHH
Q 023790 154 YYRGEIGFILDGL---PRSRIQAEILDQLA------EIDLVVNFKCADNFIVTNRGGSLKEKL 207 (277)
Q Consensus 154 ~~~~~~g~IldGf---Prt~~qae~l~~~~------~~d~vI~L~~~~e~l~~Rl~~~~~~rl 207 (277)
...-+|||.+ +.+..+.+.|..+. ....+|-=..+.+.+.+++.+++-.|+
T Consensus 163 ---~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~~~~~~ri~dRl 222 (248)
T PRK12377 163 ---KVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLLGERVMDRM 222 (248)
T ss_pred ---CCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHhhHHHHHHH
Confidence 3467889977 44444444544331 233466566777777766655554444
No 195
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.28 E-value=0.00018 Score=65.73 Aligned_cols=33 Identities=27% Similarity=0.248 Sum_probs=30.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCCccchhHH
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dl 112 (277)
.|+|+||+|||||+++..|++.++..+||.|.+
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~ 33 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSM 33 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechh
Confidence 379999999999999999999999999999763
No 196
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00022 Score=65.64 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCC
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~ 105 (277)
-...|++.||||+|||++|+.||+++.+.
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 45679999999999999999999998764
No 197
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0022 Score=63.95 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=33.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccch--hHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQ 115 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~--~dllr~ 115 (277)
..|+-|++.||||||||++|+.||..-++.++++ .+++..
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk 507 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSK 507 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHH
Confidence 4566799999999999999999999998888777 355544
No 198
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.21 E-value=0.0013 Score=59.99 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
+..++|.|+||+||||+|+.+++.+
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH
Confidence 4569999999999999998888765
No 199
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.14 E-value=0.00042 Score=66.22 Aligned_cols=32 Identities=13% Similarity=0.119 Sum_probs=28.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCcc
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~I 107 (277)
-...+|+|+|++||||||+++.|++++|...+
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v 248 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIFNTTSA 248 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 45678999999999999999999999998753
No 200
>PHA03136 thymidine kinase; Provisional
Probab=97.13 E-value=0.013 Score=55.42 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+-.+|.|.|+.|+||||.++.|.+.
T Consensus 34 ~~~~rvyieG~~gvGKTT~~~~l~~~ 59 (378)
T PHA03136 34 RRLVLLYLDGPFGTGKTTTAKLLMEM 59 (378)
T ss_pred ceeEEEEEECCCcCCHHHHHHHHHhc
Confidence 35678999999999999999999884
No 201
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.09 E-value=0.00099 Score=62.82 Aligned_cols=40 Identities=13% Similarity=0.176 Sum_probs=33.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCc--cchhHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPR--ISMSSIVRQ 115 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~--Is~~dllr~ 115 (277)
+.|..+.|.||||+|||.+|+.+|+.+|+.. ++.++|+..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 5667789999999999999999999999875 555666644
No 202
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.06 E-value=0.00043 Score=64.27 Aligned_cols=29 Identities=17% Similarity=0.121 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCcc
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~I 107 (277)
..|+|.|+||+||||+++.||+++|.+++
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 35999999999999999999999998875
No 203
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.05 E-value=0.00072 Score=54.89 Aligned_cols=29 Identities=21% Similarity=0.104 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCC
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~ 105 (277)
.+.+|++.|+.|+||||+++.+++.+|+.
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 56689999999999999999999999864
No 204
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=97.05 E-value=0.018 Score=48.19 Aligned_cols=163 Identities=15% Similarity=0.135 Sum_probs=85.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchh-HHHHHhcCCCC-hhHHH-HHH--HHhccc-cc---hH---HHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS-SIVRQDLSPRS-SLHKQ-IAN--AVNRGE-VV---SE---DIIFG 144 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~-dllr~~~~~~~-~lg~~-i~~--~l~~G~-~i---p~---~~~~~ 144 (277)
.+.+|++-|.|-+|||++|..+.+-..-+...++ |++.+.+++.. ..+.- ..+ ....|+ ++ +. +....
T Consensus 22 ~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~~~~ 101 (205)
T COG3896 22 EGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILELAMH 101 (205)
T ss_pred CceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHHHHHHH
Confidence 6778999999999999999999998765544333 56666554211 00000 000 001111 11 01 11111
Q ss_pred HHHHHHHcCCccCccEEEEcCccCCHHH-HHHHHhhcCcC-EEEEecCCHHHHHHhhcchHH-----HHHHHHHHhchhH
Q 023790 145 LLSKRLEDGYYRGEIGFILDGLPRSRIQ-AEILDQLAEID-LVVNFKCADNFIVTNRGGSLK-----EKLEAYAELGKPL 217 (277)
Q Consensus 145 ll~~~l~~~~~~~~~g~IldGfPrt~~q-ae~l~~~~~~d-~vI~L~~~~e~l~~Rl~~~~~-----~rl~~y~~~~~~l 217 (277)
-....|... ...+..+|.|.+-.+... .+.+..+..++ .+|-..||.|++.+|-..+-. .|- .++.--.+.
T Consensus 102 ~~r~ai~a~-ad~G~~~i~Ddv~~~r~~L~Dc~r~l~g~~v~~VGV~~p~E~~~~Re~rr~dR~pG~~rg-~~r~vHa~~ 179 (205)
T COG3896 102 SRRRAIRAY-ADNGMNVIADDVIWTREWLVDCLRVLEGCRVWMVGVHVPDEEGARRELRRGDRHPGWNRG-SARAVHADA 179 (205)
T ss_pred HHHHHHHHH-hccCcceeehhcccchhhHHHHHHHHhCCceEEEEeeccHHHHHHHHhhcCCcCcchhhh-hHHHhcCCc
Confidence 111122211 134667888987666443 33344444454 588999999999998622110 111 111111111
Q ss_pred HHHHHhcCcEEEEeCC-CCHHHHHHHHHHHHH
Q 023790 218 EDYYQKQKKLLEFQVG-SAPLETWQGLLTALH 248 (277)
Q Consensus 218 ~~~y~~~~~li~Ida~-~s~eev~~~I~~~L~ 248 (277)
.| -+.+|++ .+|.|....|.+.++
T Consensus 180 --~Y-----DlevDTS~~tp~EcAr~i~~r~q 204 (205)
T COG3896 180 --EY-----DLEVDTSATTPHECAREIHERYQ 204 (205)
T ss_pred --ce-----eeeecccCCCHHHHHHHHHHHhc
Confidence 12 2567876 568999888877654
No 205
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.04 E-value=0.00075 Score=53.01 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
+..++|.|+||+|||++++.+++.+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999999987
No 206
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.99 E-value=0.014 Score=52.09 Aligned_cols=108 Identities=18% Similarity=0.220 Sum_probs=63.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh---C--CCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcC
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDG 153 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~---g--~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~ 153 (277)
..++|.|+||+|||+++..++..+ | +.++++.+++... +..+...... ..+++ +.+..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l-----------~~~~~~~~~~----~~~~l-~~l~~- 162 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAM-----------KDTFSNSETS----EEQLL-NDLSN- 162 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHH-----------HHHHhhcccc----HHHHH-HHhcc-
Confidence 368999999999999999999976 2 3456776766432 2222111111 11222 22332
Q ss_pred CccCccEEEEcCccC---CHHHHHHHHhh------cCcCEEEEecCCHHHHHHhhcchHHHHH
Q 023790 154 YYRGEIGFILDGLPR---SRIQAEILDQL------AEIDLVVNFKCADNFIVTNRGGSLKEKL 207 (277)
Q Consensus 154 ~~~~~~g~IldGfPr---t~~qae~l~~~------~~~d~vI~L~~~~e~l~~Rl~~~~~~rl 207 (277)
..-+|||.+.. +..+.+.|..+ ..-..+|.=..+.+.+.+++.+++-.|+
T Consensus 163 ----~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g~ri~sRl 221 (244)
T PRK07952 163 ----VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGERVMDRM 221 (244)
T ss_pred ----CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhChHHHHHH
Confidence 35678887643 22233334332 1344677778888888887766665555
No 207
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.96 E-value=0.00075 Score=62.77 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCcc
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~I 107 (277)
+.+|+|+|+|||||||+++.|++.+|.+++
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v 191 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSA 191 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 578999999999999999999999998874
No 208
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.95 E-value=0.0019 Score=54.49 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCC
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLLEV 104 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~g~ 104 (277)
.++|+|++|||||++|..++...+-
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~~ 25 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELGG 25 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3789999999999999999987553
No 209
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0096 Score=54.64 Aligned_cols=138 Identities=12% Similarity=0.151 Sum_probs=76.5
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCc--cchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCccCc
Q 023790 81 WAFIGSPRAKKHVYAEMLSKLLEVPR--ISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (277)
Q Consensus 81 Ivi~G~pGSGKSTla~~La~~~g~~~--Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (277)
|++.||||+|||.+|+.+|-.-+-.+ ||..||+.+.+-. ++.++-++....-++ .
T Consensus 169 iLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGE------------------SEkLVknLFemARe~-----k 225 (439)
T KOG0739|consen 169 ILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGE------------------SEKLVKNLFEMAREN-----K 225 (439)
T ss_pred EEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhcc------------------HHHHHHHHHHHHHhc-----C
Confidence 89999999999999999999887655 5556888765421 122222332211111 1
Q ss_pred cEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcc--hHHHHHH-HHHHhchhHHHHHHhcCcEEEEeCCCC
Q 023790 159 IGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG--SLKEKLE-AYAELGKPLEDYYQKQKKLLEFQVGSA 235 (277)
Q Consensus 159 ~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~--~~~~rl~-~y~~~~~~l~~~y~~~~~li~Ida~~s 235 (277)
-.+| |+|-=+..+-.|-++ ...+|++ .|.-+.+.+ -.+.+.++++.++..
T Consensus 226 PSII------------------------FiDEiDslcg~r~enEseasRRIKTEfLVQMqGV---G~d~~gvLVLgATNi 278 (439)
T KOG0739|consen 226 PSII------------------------FIDEIDSLCGSRSENESEASRRIKTEFLVQMQGV---GNDNDGVLVLGATNI 278 (439)
T ss_pred CcEE------------------------EeehhhhhccCCCCCchHHHHHHHHHHHHhhhcc---ccCCCceEEEecCCC
Confidence 1222 221111222233321 2223333 222222222 223345778888888
Q ss_pred HHHHHHHHHHHHHHccccccCCchhhhhhhccccee
Q 023790 236 PLETWQGLLTALHLQHINAAYSSQELMKRSHLLRLK 271 (277)
Q Consensus 236 ~eev~~~I~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 271 (277)
|..+=+.|...++.+=..++|..+ ++-+.|+|.
T Consensus 279 Pw~LDsAIRRRFekRIYIPLPe~~---AR~~MF~lh 311 (439)
T KOG0739|consen 279 PWVLDSAIRRRFEKRIYIPLPEAH---ARARMFKLH 311 (439)
T ss_pred chhHHHHHHHHhhcceeccCCcHH---Hhhhhheec
Confidence 888888899888887777666543 444455543
No 210
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=96.94 E-value=0.0022 Score=57.96 Aligned_cols=28 Identities=29% Similarity=0.317 Sum_probs=25.5
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 75 ~~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
++.+.+|.|.|+||+||||+|+.|++.+
T Consensus 79 ~~~pfIIgiaGsvavGKST~ar~L~~ll 106 (283)
T COG1072 79 QQRPFIIGIAGSVAVGKSTTARILQALL 106 (283)
T ss_pred CCCCEEEEeccCccccHHHHHHHHHHHH
Confidence 4788999999999999999999998866
No 211
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.94 E-value=0.00069 Score=55.00 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=21.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHhC
Q 023790 81 WAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 81 Ivi~G~pGSGKSTla~~La~~~g 103 (277)
|+|+||+||||||+++.|++.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 78999999999999999999864
No 212
>PRK08116 hypothetical protein; Validated
Probab=96.94 E-value=0.016 Score=52.40 Aligned_cols=109 Identities=14% Similarity=0.170 Sum_probs=59.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh---C--CCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcC
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDG 153 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~---g--~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~ 153 (277)
.-++|.|++|+|||.+|..+++.+ | +.+++..+++... +..+..... ....+++ +.+..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i-----------~~~~~~~~~---~~~~~~~-~~l~~- 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRI-----------KSTYKSSGK---EDENEII-RSLVN- 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH-----------HHHHhcccc---ccHHHHH-HHhcC-
Confidence 348999999999999999999875 3 3456776766532 222211110 0111222 22222
Q ss_pred CccCccEEEEcCccC---C-HHHHHH---HHhh--cCcCEEEEecCCHHHHHHhhcchHHHHH
Q 023790 154 YYRGEIGFILDGLPR---S-RIQAEI---LDQL--AEIDLVVNFKCADNFIVTNRGGSLKEKL 207 (277)
Q Consensus 154 ~~~~~~g~IldGfPr---t-~~qae~---l~~~--~~~d~vI~L~~~~e~l~~Rl~~~~~~rl 207 (277)
..-+|||.+-. + ..+... ++.. ..-..+|--..+++.+.+++..++-.|+
T Consensus 179 ----~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~~~~~~ri~sRl 237 (268)
T PRK08116 179 ----ADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELKNQYGKRIYDRI 237 (268)
T ss_pred ----CCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHH
Confidence 34678887621 1 122222 2221 1234677777888887777654444444
No 213
>PTZ00202 tuzin; Provisional
Probab=96.91 E-value=0.0093 Score=57.66 Aligned_cols=28 Identities=14% Similarity=0.061 Sum_probs=24.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCC
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~ 105 (277)
+.+++|.|++|+||||+++.+..+.+.+
T Consensus 286 privvLtG~~G~GKTTLlR~~~~~l~~~ 313 (550)
T PTZ00202 286 PRIVVFTGFRGCGKSSLCRSAVRKEGMP 313 (550)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcCCce
Confidence 3488999999999999999999887754
No 214
>PF13173 AAA_14: AAA domain
Probab=96.91 E-value=0.00088 Score=53.44 Aligned_cols=35 Identities=17% Similarity=0.091 Sum_probs=28.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhC----CCccchhHH
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLE----VPRISMSSI 112 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g----~~~Is~~dl 112 (277)
...++|.|+.|+||||+++.+++.+. +.+++.++.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~ 40 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDP 40 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCH
Confidence 45789999999999999999998865 666766544
No 215
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.91 E-value=0.00079 Score=64.13 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=30.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccc--hhHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS--MSSIVR 114 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is--~~dllr 114 (277)
.+..|++.||||+|||++|+.+|+..+..++. ..+++.
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 45569999999999999999999999876544 445543
No 216
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.90 E-value=0.00085 Score=64.42 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=29.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~ 110 (277)
....|+|.||||+|||++|+.||+.++.+++.++
T Consensus 107 ~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id 140 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLLAQTLARILDVPFAIAD 140 (412)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCceecc
Confidence 3466999999999999999999999998876543
No 217
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0044 Score=61.50 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=31.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCccchh--HHHHH
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQ 115 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~--dllr~ 115 (277)
|.=|+++||||||||-+|+.+|.+-|+.+|++. +|+-.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNk 584 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNK 584 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHH
Confidence 445899999999999999999999988888874 55543
No 218
>PRK14974 cell division protein FtsY; Provisional
Probab=96.89 E-value=0.012 Score=54.97 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++.+|+|+|+||+||||.+..|+..+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357889999999999999998888765
No 219
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.87 E-value=0.0011 Score=61.12 Aligned_cols=36 Identities=25% Similarity=0.204 Sum_probs=33.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dl 112 (277)
.+..|+|+||.+||||-+|-.||+++|..+||.|.+
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm 37 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM 37 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchh
Confidence 466899999999999999999999999999999865
No 220
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.86 E-value=0.00094 Score=56.28 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
+|+|.|+||+||||+.+.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999999988
No 221
>PF05729 NACHT: NACHT domain
Probab=96.86 E-value=0.001 Score=54.22 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++|.|+||+||||+++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 57999999999999999999876
No 222
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.85 E-value=0.00091 Score=65.54 Aligned_cols=33 Identities=12% Similarity=0.216 Sum_probs=28.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
.++-|++.||||+|||.+|+.+|+.+|.+.+.+
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l 290 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRL 290 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 445689999999999999999999999887554
No 223
>PLN02796 D-glycerate 3-kinase
Probab=96.83 E-value=0.00098 Score=62.31 Aligned_cols=38 Identities=11% Similarity=0.061 Sum_probs=31.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC-----CCccchhHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIV 113 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g-----~~~Is~~dll 113 (277)
+++.+|.|.|++||||||+++.|+..+. ...|++++..
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 4778999999999999999999998874 3456776655
No 224
>PF13245 AAA_19: Part of AAA domain
Probab=96.83 E-value=0.0014 Score=48.00 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=17.9
Q ss_pred CeEEEEEcCCCCChH-HHHHHHHHHh
Q 023790 78 GVHWAFIGSPRAKKH-VYAEMLSKLL 102 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKS-Tla~~La~~~ 102 (277)
....+|.|||||||| |+++.+++.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 345777999999999 5555555543
No 225
>COG3911 Predicted ATPase [General function prediction only]
Probab=96.82 E-value=0.0017 Score=53.68 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=29.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchh-HHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS-SIVRQD 116 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~-dllr~~ 116 (277)
.|.+++++.|+||+||||+...|+.+--..+...+ +++.++
T Consensus 7 nR~~~fIltGgpGaGKTtLL~aLa~~Gfatvee~~r~ii~~e 48 (183)
T COG3911 7 NRHKRFILTGGPGAGKTTLLAALARAGFATVEEAGRDIIALE 48 (183)
T ss_pred ccceEEEEeCCCCCcHHHHHHHHHHcCceeeccchhhHHHHH
Confidence 46688999999999999999999986333333333 455544
No 226
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.81 E-value=0.0012 Score=62.19 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=27.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
.+.-++|.||||+|||++|+.+++.++..++.+
T Consensus 155 ~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v 187 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV 187 (364)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhCCCCEEec
Confidence 345699999999999999999999998776544
No 227
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.81 E-value=0.001 Score=54.64 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
+++|.|+|+.||||||+++.|...
T Consensus 1 MkrimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 1 MKRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred CceEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999999764
No 228
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.80 E-value=0.014 Score=52.71 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=30.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
=-|++|++.||||+|||-.|+.||.+...+.+.+
T Consensus 149 WAPknVLFyGppGTGKTm~Akalane~kvp~l~v 182 (368)
T COG1223 149 WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLV 182 (368)
T ss_pred cCcceeEEECCCCccHHHHHHHHhcccCCceEEe
Confidence 4568899999999999999999999999988765
No 229
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.78 E-value=0.005 Score=59.58 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.+|.+|+|+|++|+||||.+..||..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 467889999999999999999999876
No 230
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.77 E-value=0.0013 Score=62.98 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=28.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
.+.-|+|.||||+|||++++.+|...+..++..
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i 210 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV 210 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 456699999999999999999999998876554
No 231
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.72 E-value=0.032 Score=46.73 Aligned_cols=39 Identities=13% Similarity=-0.054 Sum_probs=29.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh--CCCccchhHHHHHh
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLL--EVPRISMSSIVRQD 116 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~--g~~~Is~~dllr~~ 116 (277)
+...+|-|+.||||||+-..+--.+ ++.+|+.|.+..+.
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i 42 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQI 42 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhhc
Confidence 4567899999999999876554433 67889998777664
No 232
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.72 E-value=0.0017 Score=59.27 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCC
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~ 105 (277)
.+..++|.||||+|||++|+.+++.++..
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~ 57 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIANEMGVN 57 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34558999999999999999999998765
No 233
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.72 E-value=0.0016 Score=56.29 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhC
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g 103 (277)
|.+|+|+||+|+||||.+.+||.++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~ 26 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK 26 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh
Confidence 56899999999999999999998873
No 234
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.70 E-value=0.0014 Score=62.85 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
.+..|+|.||||+|||++|+.||+.++.+++..
T Consensus 115 ~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~ 147 (413)
T TIGR00382 115 SKSNILLIGPTGSGKTLLAQTLARILNVPFAIA 147 (413)
T ss_pred CCceEEEECCCCcCHHHHHHHHHHhcCCCeEEe
Confidence 346899999999999999999999998877533
No 235
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.69 E-value=0.0014 Score=62.02 Aligned_cols=33 Identities=12% Similarity=0.138 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
+....++.||||+||||+|+.||...+..+..+
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~ 79 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGTTNAAFEAL 79 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHhhCCceEEe
Confidence 444578999999999999999999998876544
No 236
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.69 E-value=0.0013 Score=50.97 Aligned_cols=22 Identities=32% Similarity=0.297 Sum_probs=19.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHh
Q 023790 81 WAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 81 Ivi~G~pGSGKSTla~~La~~~ 102 (277)
|+|.|+||+|||++|+.|++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998864
No 237
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.67 E-value=0.0015 Score=64.00 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=27.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
+.-++|.||||+|||++++.||...+.+++.+
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~~~~~i 119 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI 119 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCeeec
Confidence 34599999999999999999999998887654
No 238
>PRK09087 hypothetical protein; Validated
Probab=96.66 E-value=0.0018 Score=57.14 Aligned_cols=34 Identities=15% Similarity=0.061 Sum_probs=30.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHH
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dl 112 (277)
..++|.|++|||||++++.+++..+..+++.+++
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~ 78 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNEI 78 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHc
Confidence 4589999999999999999999999888888643
No 239
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.65 E-value=0.0016 Score=54.23 Aligned_cols=27 Identities=15% Similarity=0.085 Sum_probs=18.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+..++|.|++|+|||++.+.+.+.+
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999887765
No 240
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.64 E-value=0.0026 Score=51.10 Aligned_cols=28 Identities=14% Similarity=0.283 Sum_probs=26.2
Q ss_pred cCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 74 ~~~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.|++|+++.+.|+||+||+.+++.||+.
T Consensus 49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 49 NPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred CCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 4689999999999999999999999997
No 241
>PHA02244 ATPase-like protein
Probab=96.64 E-value=0.0013 Score=62.14 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=31.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV 113 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dll 113 (277)
.+..|+|.|+||+|||++|+.+++.+|.+++.+..++
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~ 154 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIM 154 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecCh
Confidence 3445889999999999999999999999988775443
No 242
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.61 E-value=0.0019 Score=56.03 Aligned_cols=37 Identities=8% Similarity=0.088 Sum_probs=28.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC-----CCccchhHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSI 112 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g-----~~~Is~~dl 112 (277)
..+..++|.|++|+|||++++.+++... +.+++..++
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 3556799999999999999999998652 345555444
No 243
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.61 E-value=0.0031 Score=55.80 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=23.8
Q ss_pred CccCCCCeEEEEEcCCCCChHHHHHHHHH
Q 023790 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 72 ~~~~~~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
++.| ++-.++|.|+||||||++|..++.
T Consensus 16 GG~~-~gs~~lI~G~pGsGKT~la~~~l~ 43 (237)
T TIGR03877 16 GGIP-ERNVVLLSGGPGTGKSIFSQQFLW 43 (237)
T ss_pred CCCc-CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 4555 788999999999999999987654
No 244
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0012 Score=67.15 Aligned_cols=31 Identities=26% Similarity=0.360 Sum_probs=28.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCCccchh
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~ 110 (277)
=+++.||||+|||-+|+.+|.+=|+|++++.
T Consensus 346 GvLL~GPPGTGKTLLAKAiAGEAgVPF~svS 376 (774)
T KOG0731|consen 346 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSVS 376 (774)
T ss_pred ceEEECCCCCcHHHHHHHHhcccCCceeeec
Confidence 3899999999999999999999999998874
No 245
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.59 E-value=0.001 Score=53.71 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=20.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCcc
Q 023790 81 WAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (277)
Q Consensus 81 Ivi~G~pGSGKSTla~~La~~~g~~~I 107 (277)
+++.|+||.||||+++.||+..|..+.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCcee
Confidence 789999999999999999999987654
No 246
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.58 E-value=0.0022 Score=49.61 Aligned_cols=23 Identities=13% Similarity=0.044 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
+|+|+|++||||||+.+.|....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 247
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.57 E-value=0.022 Score=54.98 Aligned_cols=27 Identities=15% Similarity=0.130 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++.+|.|+|++||||||.+..||..+
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999999876
No 248
>PRK04195 replication factor C large subunit; Provisional
Probab=96.56 E-value=0.0019 Score=63.18 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=28.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
+..++|.||||+||||+++.|++.+|+.++.+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 56799999999999999999999999877654
No 249
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.55 E-value=0.0022 Score=62.07 Aligned_cols=33 Identities=12% Similarity=0.143 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
.+.-++|.||||+|||++|+.+|..++..++.+
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V 248 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSATFLRV 248 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEE
Confidence 445688999999999999999999988776543
No 250
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.55 E-value=0.0023 Score=59.35 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=25.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCc
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPR 106 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~ 106 (277)
+..++|.||||+|||++|+.+|+.++...
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 34689999999999999999999998754
No 251
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.54 E-value=0.048 Score=56.01 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=24.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCC
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~ 105 (277)
-.++|.|++|+||||+++.|++.+++.
T Consensus 39 HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 39 HAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 346899999999999999999999874
No 252
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.0022 Score=59.13 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=29.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccc
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is 108 (277)
...-+|+++||.|||||-+|+.||+.+++|+--
T Consensus 95 L~KSNILLiGPTGsGKTlLAqTLAk~LnVPFai 127 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQTLAKILNVPFAI 127 (408)
T ss_pred eeeccEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 456679999999999999999999999998743
No 253
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.52 E-value=0.0023 Score=54.07 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=24.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~ 104 (277)
...++++||+|+|||.+|+.|++.+..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV 29 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 456899999999999999999999884
No 254
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.0021 Score=64.73 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=30.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
.+++++|+.||||.|||++++.+|+.+|-.++.+
T Consensus 348 ~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~ 381 (782)
T COG0466 348 LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRI 381 (782)
T ss_pred CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEE
Confidence 5779999999999999999999999998766544
No 255
>PRK06526 transposase; Provisional
Probab=96.51 E-value=0.0032 Score=56.57 Aligned_cols=40 Identities=20% Similarity=0.121 Sum_probs=29.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh---C--CCccchhHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQ 115 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~---g--~~~Is~~dllr~ 115 (277)
..+..++|.||||+|||++|..|+... | +.++++.+++.+
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~ 140 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVAR 140 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHH
Confidence 356679999999999999999997753 2 334555555543
No 256
>PRK06620 hypothetical protein; Validated
Probab=96.51 E-value=0.002 Score=56.31 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=25.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccc
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is 108 (277)
..++|.||||||||++++.+++..+..+++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence 458999999999999999999988765544
No 257
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.018 Score=54.60 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=29.5
Q ss_pred CCC-eEEEEEcCCCCChHHHHHHHHHHhCCCccchh
Q 023790 76 RRG-VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (277)
Q Consensus 76 ~~~-~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~ 110 (277)
++| +-|++.||||+|||-+|+.+|-+.|..++++.
T Consensus 242 rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVS 277 (491)
T KOG0738|consen 242 RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVS 277 (491)
T ss_pred ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEec
Confidence 444 44899999999999999999999998776653
No 258
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.49 E-value=0.0019 Score=61.90 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=31.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC-----CCccchhHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIV 113 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g-----~~~Is~~dll 113 (277)
.++.+|.|.|+.||||||+++.|...+. ...|++|+..
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 4788999999999999999999987662 4567777765
No 259
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.0095 Score=60.12 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=34.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchh--HHHHHhc
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQDL 117 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~--dllr~~~ 117 (277)
-..-|++.||||+|||.+|..+|...++.+||+. +++.+-+
T Consensus 700 ~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyI 742 (952)
T KOG0735|consen 700 LRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYI 742 (952)
T ss_pred cccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHh
Confidence 3455999999999999999999999999999884 6776654
No 260
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.47 E-value=0.003 Score=53.56 Aligned_cols=28 Identities=14% Similarity=-0.107 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g 103 (277)
.+++++.|+|++||||||+++.|...+.
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHh
Confidence 3667899999999999999999997764
No 261
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.46 E-value=0.045 Score=51.08 Aligned_cols=108 Identities=13% Similarity=0.142 Sum_probs=62.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh-----CCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcC
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDG 153 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~-----g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~ 153 (277)
..++|.|++|+|||.++..+|+.+ .+.++++.+++..... ..+.... +. ...+ +.+..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~----------~~~~~~~----~~-~~~~-~~l~~- 246 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILRE----------IRFNNDK----EL-EEVY-DLLIN- 246 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHH----------HHhccch----hH-HHHH-HHhcc-
Confidence 669999999999999999999875 4456777777654310 0011110 00 0111 22222
Q ss_pred CccCccEEEEcCcc---CCHHHHHHHHhh------cCcCEEEEecCCHHHHHHhhcchHHHHH
Q 023790 154 YYRGEIGFILDGLP---RSRIQAEILDQL------AEIDLVVNFKCADNFIVTNRGGSLKEKL 207 (277)
Q Consensus 154 ~~~~~~g~IldGfP---rt~~qae~l~~~------~~~d~vI~L~~~~e~l~~Rl~~~~~~rl 207 (277)
..-+|||.+- .+....+.|..+ ..-..+|-=..+++.+.+++.+++..|+
T Consensus 247 ----~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~eri~SRL 305 (329)
T PRK06835 247 ----CDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYSERISSRL 305 (329)
T ss_pred ----CCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHH
Confidence 3568888762 222222223222 1334677778888888877766555555
No 262
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=96.46 E-value=0.003 Score=58.08 Aligned_cols=35 Identities=17% Similarity=0.028 Sum_probs=29.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dl 112 (277)
.++.|+|+||.|||||.+|-.||++. ...||.|.+
T Consensus 3 ~~~ii~I~GpTasGKS~LAl~LA~~~-~eIIsaDS~ 37 (300)
T PRK14729 3 ENKIVFIFGPTAVGKSNILFHFPKGK-AEIINVDSI 37 (300)
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC-CcEEeccHH
Confidence 34589999999999999999999994 578888753
No 263
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.45 E-value=0.0029 Score=52.87 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.+++.|+||+||||++..++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998875
No 264
>PRK13695 putative NTPase; Provisional
Probab=96.45 E-value=0.0029 Score=53.11 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
|+|+|.|++||||||+++.++..+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 679999999999999999987765
No 265
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.45 E-value=0.0027 Score=55.60 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
.++-+++|+||+||||||+.+.|..
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 5788899999999999999998864
No 266
>PRK04328 hypothetical protein; Provisional
Probab=96.45 E-value=0.0041 Score=55.54 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=24.0
Q ss_pred CccCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 72 ~~~~~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
++.| ++-.++|.|+||||||++|..++..
T Consensus 18 GGip-~gs~ili~G~pGsGKT~l~~~fl~~ 46 (249)
T PRK04328 18 GGIP-ERNVVLLSGGPGTGKSIFSQQFLWN 46 (249)
T ss_pred CCCc-CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3454 7889999999999999999887654
No 267
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.44 E-value=0.0028 Score=56.47 Aligned_cols=27 Identities=26% Similarity=0.164 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g 103 (277)
.+..++|.|++|+||||+++.+++.+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 345689999999999999999999875
No 268
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.44 E-value=0.0034 Score=54.83 Aligned_cols=36 Identities=8% Similarity=0.065 Sum_probs=28.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh-----CCCccchhHHH
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIV 113 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~-----g~~~Is~~dll 113 (277)
...++|.|++|+|||++++.+++.. .+.+++..++.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~ 82 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL 82 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence 3458999999999999999999875 55666665543
No 269
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.44 E-value=0.0019 Score=54.15 Aligned_cols=32 Identities=22% Similarity=0.140 Sum_probs=28.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHhC-CCccchhHH
Q 023790 81 WAFIGSPRAKKHVYAEMLSKLLE-VPRISMSSI 112 (277)
Q Consensus 81 Ivi~G~pGSGKSTla~~La~~~g-~~~Is~~dl 112 (277)
|+=++.+||||||+|..|++-|| +.||--|++
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI 34 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNI 34 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCccccCCC
Confidence 45578999999999999999999 999887766
No 270
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.42 E-value=0.036 Score=57.70 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=24.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCC
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~ 105 (277)
--++|.|++|+||||+|+.|++.+++.
T Consensus 38 Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 38 HAYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 347999999999999999999999874
No 271
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.42 E-value=0.003 Score=60.60 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=27.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
+...++|.||||+||||+|+.+++..+..++.+
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l 67 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAGATDAPFEAL 67 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 344688999999999999999999887766544
No 272
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.41 E-value=0.022 Score=52.70 Aligned_cols=35 Identities=17% Similarity=0.089 Sum_probs=31.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~d 111 (277)
+-++|+|+|+.|||||-++--||.+++...|+.|.
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDk 40 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDK 40 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccc
Confidence 46789999999999999999999999999888864
No 273
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.40 E-value=0.0032 Score=50.62 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
+..+|+++|++||||||++..|...
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCC
Confidence 4577999999999999999998754
No 274
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.38 E-value=0.0028 Score=59.18 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=39.9
Q ss_pred cccCCcCCCccccccccccccchHhhhccccccCCCCCCccCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 34 AAAEPLFDPDNYYSYYQAESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++.++|-|++. .-.|++.+.+...+.+... . ..+..++|.|+||+|||++++.+.+.+
T Consensus 6 ~~l~~~~~p~~l---~gRe~e~~~l~~~l~~~~~--~-----~~~~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 6 DLLEPDYVPDRI---VHRDEQIEELAKALRPILR--G-----SRPSNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred hhCCCCCCCCCC---CCcHHHHHHHHHHHHHHHc--C-----CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 455677777632 2246677777665433221 1 345569999999999999999998764
No 275
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.38 E-value=0.051 Score=54.96 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=24.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~ 104 (277)
+--++|.|++|+||||+|+.|++.+++
T Consensus 38 pHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 38 HHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 345799999999999999999999987
No 276
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.37 E-value=0.0029 Score=62.00 Aligned_cols=35 Identities=6% Similarity=-0.036 Sum_probs=27.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh---C--CCccchh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMS 110 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~---g--~~~Is~~ 110 (277)
-++-.++|.|+||+||||++..++... | +.+++..
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~e 300 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYE 300 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEee
Confidence 378899999999999999999998754 3 3455553
No 277
>CHL00176 ftsH cell division protein; Validated
Probab=96.37 E-value=0.0033 Score=63.61 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
.+.-++|.||||+|||++|+.+|...+.+++.+
T Consensus 215 ~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~i 247 (638)
T CHL00176 215 IPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSI 247 (638)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 345699999999999999999999999887655
No 278
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.37 E-value=0.0036 Score=61.77 Aligned_cols=30 Identities=17% Similarity=0.095 Sum_probs=26.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCcc
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~I 107 (277)
..++++.|||||||||..+.||+.+|+.++
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~elg~~v~ 74 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKELGFEVQ 74 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence 447899999999999999999999998654
No 279
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.36 E-value=0.0044 Score=52.67 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=30.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh-----CCCccchhHHHHHh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQD 116 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~-----g~~~Is~~dllr~~ 116 (277)
++..++|.|+||+|||.+|..++.+. .+.++++.+++...
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l 90 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL 90 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence 56679999999999999999998753 44678888887653
No 280
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.34 E-value=0.0033 Score=57.14 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=25.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCc
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPR 106 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~ 106 (277)
-.+++.||||-||||+|..+|.++|...
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA~Emgvn~ 80 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIANELGVNL 80 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHHHHhcCCe
Confidence 3589999999999999999999998854
No 281
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.33 E-value=0.049 Score=54.97 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=24.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCC
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~ 105 (277)
-.++|.|++|+||||+|+.|++.+++.
T Consensus 39 ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 39 HAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 457999999999999999999999873
No 282
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.33 E-value=0.0029 Score=60.72 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=21.7
Q ss_pred EEEEcCCCCChHHHHHHHHHHhC
Q 023790 81 WAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 81 Ivi~G~pGSGKSTla~~La~~~g 103 (277)
|+|.|+||+||||.|+.||+.|.
T Consensus 266 ILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 266 ILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred eEEecCCCCChhHHHHHHHHHHH
Confidence 89999999999999999999874
No 283
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.31 E-value=0.0032 Score=50.80 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++|.|+||+||||++..++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 36899999999999999998865
No 284
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.31 E-value=0.0043 Score=56.33 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+..|.|+|++|+||||.+..||..+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 456788999999999999999999876
No 285
>PRK09183 transposase/IS protein; Provisional
Probab=96.31 E-value=0.0045 Score=55.76 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=27.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh---C--CCccchhHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIV 113 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~---g--~~~Is~~dll 113 (277)
.++..++|.||||+|||+++..|+... | +.+++..+++
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~ 142 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL 142 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH
Confidence 356679999999999999999997653 3 2345554544
No 286
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.30 E-value=0.005 Score=49.28 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=25.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCC
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~ 105 (277)
+.+.+|++.|.-||||||+++.+++.+|+.
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 366889999999999999999999999864
No 287
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.29 E-value=0.0054 Score=53.92 Aligned_cols=29 Identities=14% Similarity=-0.034 Sum_probs=24.3
Q ss_pred CccCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 72 ~~~~~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
++.| ++-.++|.|+||||||++|..++..
T Consensus 20 gG~~-~g~~~~i~G~~GsGKt~l~~~~~~~ 48 (234)
T PRK06067 20 GGIP-FPSLILIEGDHGTGKSVLSQQFVYG 48 (234)
T ss_pred CCCc-CCcEEEEECCCCCChHHHHHHHHHH
Confidence 4455 7888999999999999999999654
No 288
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.28 E-value=0.0044 Score=57.52 Aligned_cols=27 Identities=11% Similarity=0.081 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+.+|.|+||+|+||||.+..||..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 467889999999999999999999876
No 289
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.28 E-value=0.0052 Score=52.87 Aligned_cols=38 Identities=24% Similarity=0.236 Sum_probs=29.0
Q ss_pred CccCCCCeEEEEEcCCCCChHHHHHHHHHHh---C--CCccchh
Q 023790 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMS 110 (277)
Q Consensus 72 ~~~~~~~~~Ivi~G~pGSGKSTla~~La~~~---g--~~~Is~~ 110 (277)
++.| ++..+.|.|+||||||++|..++... | +.+|++.
T Consensus 7 GGi~-~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 7 GGVE-RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CCCC-CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 3444 78999999999999999999988643 2 4455553
No 290
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.0078 Score=56.33 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=35.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccch--hHHHHHhcCCC
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQDLSPR 120 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~--~dllr~~~~~~ 120 (277)
..|+=|++.||||+|||-+|+.+|.+.+..+|.+ .+++++.+-.+
T Consensus 183 ~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEG 229 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEG 229 (406)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccc
Confidence 3455599999999999999999999998877654 46776665433
No 291
>PRK06893 DNA replication initiation factor; Validated
Probab=96.27 E-value=0.0044 Score=54.58 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=26.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh-----CCCccchh
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMS 110 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~-----g~~~Is~~ 110 (277)
+.++|.|+||+|||++++.+++.+ +..++++.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 468999999999999999999875 55566653
No 292
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.25 E-value=0.0047 Score=53.40 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
|..|.|+|++||||||+.+.+.+.+
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRAL 25 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4679999999999999999998875
No 293
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.25 E-value=0.0042 Score=53.51 Aligned_cols=24 Identities=8% Similarity=0.062 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~g 103 (277)
.|+|.||+||||||+...|...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 589999999999999998887764
No 294
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.24 E-value=0.0047 Score=48.24 Aligned_cols=24 Identities=21% Similarity=0.004 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLS 99 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La 99 (277)
..+..++|.|++||||||+++.+.
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 356789999999999999999987
No 295
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.24 E-value=0.004 Score=55.15 Aligned_cols=33 Identities=9% Similarity=-0.033 Sum_probs=26.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhC-----CCccchhH
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSS 111 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g-----~~~Is~~d 111 (277)
..++|.||||+|||++++.+++... +.+++.++
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 4689999999999999999998654 45666654
No 296
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.0043 Score=57.69 Aligned_cols=33 Identities=27% Similarity=0.277 Sum_probs=30.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
.|++|+++||.|.|||.+|++||+--|.|+|-+
T Consensus 49 ~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKV 81 (444)
T COG1220 49 TPKNILMIGPTGVGKTEIARRLAKLAGAPFIKV 81 (444)
T ss_pred CccceEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 678999999999999999999999999888644
No 297
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.21 E-value=0.0038 Score=62.08 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
+..++++.||||+||||+++.|++.+
T Consensus 102 ~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 102 KKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred CCceEEEecCCCCCchHHHHHHHHHH
Confidence 56799999999999999999999865
No 298
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.21 E-value=0.0042 Score=63.91 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=29.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCccch--hHHHH
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVR 114 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~--~dllr 114 (277)
+.-|+|.||||||||++|+.+|...+.++++. .+++.
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~ 525 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILS 525 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhh
Confidence 34489999999999999999999998877654 34443
No 299
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.20 E-value=0.0044 Score=52.72 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
+.+..++|+|++||||||+.+.|...+
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456789999999999999999998765
No 300
>PRK13768 GTPase; Provisional
Probab=96.20 E-value=0.0048 Score=55.31 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
++.++|.|++||||||++..++..+
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHH
Confidence 5789999999999999999998776
No 301
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.20 E-value=0.004 Score=61.27 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=24.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCC
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~ 105 (277)
+.-++|.||||+|||++|+.+++.++..
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 4559999999999999999999998654
No 302
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.18 E-value=0.005 Score=50.31 Aligned_cols=24 Identities=17% Similarity=0.122 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
++|.|+|+.+|||||+++.|.+.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999998865
No 303
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.18 E-value=0.0038 Score=58.41 Aligned_cols=54 Identities=24% Similarity=0.302 Sum_probs=37.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC--CCc--cchhHHHHHhcCCCChhHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE--VPR--ISMSSIVRQDLSPRSSLHKQIAN 129 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g--~~~--Is~~dllr~~~~~~~~lg~~i~~ 129 (277)
..+.-|+|.||||+|||-+|-.+|+.+| .|+ ++.++++..++.+...+-+.++.
T Consensus 63 ~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~L~qa~Rr 120 (450)
T COG1224 63 MAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEALTQALRR 120 (450)
T ss_pred ccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHHHHHHHHHHH
Confidence 4567799999999999999999999997 344 55556665555443333333333
No 304
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.18 E-value=0.0045 Score=48.05 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHHH
Q 023790 80 HWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~ 100 (277)
+|+|+|.||+||||+...|..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999984
No 305
>PLN03025 replication factor C subunit; Provisional
Probab=96.18 E-value=0.0048 Score=57.00 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
+.++|.||||+||||++..+++.+
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 458899999999999999999986
No 306
>PRK04296 thymidine kinase; Provisional
Probab=96.18 E-value=0.005 Score=52.73 Aligned_cols=25 Identities=8% Similarity=-0.193 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
+..+++.|+||+||||.+..++.++
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHH
Confidence 5788999999999999999998876
No 307
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.18 E-value=0.0077 Score=53.22 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=19.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
++-.+.|.|+||+||||+|..++.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~ 46 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAY 46 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 566899999999999999855544
No 308
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=96.18 E-value=0.19 Score=45.41 Aligned_cols=170 Identities=13% Similarity=0.032 Sum_probs=85.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHH---HHhcCCCChhHHHHHHHHhccccc--hHHHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV---RQDLSPRSSLHKQIANAVNRGEVV--SEDIIFGLLSKRL 150 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dll---r~~~~~~~~lg~~i~~~l~~G~~i--p~~~~~~ll~~~l 150 (277)
..+++|+|.|..||||+...+.|.+.++=..+.+-.+- .++. ....++..-+..=..|+.. ...+-...+..++
T Consensus 54 ~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~Pt~eE~-~~p~lWRfw~~lP~~G~i~IF~RSWY~~vl~~rv 132 (264)
T TIGR03709 54 RRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAPSAEEL-DHDFLWRIHKALPERGEIGIFNRSHYEDVLVVRV 132 (264)
T ss_pred CCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHHHH-cCchHHHHHHhCCCCCeEEEEcCccccchhhhhh
Confidence 46899999999999999999999998855444331110 0000 0011122111111222211 1112222222222
Q ss_pred HcCCccCccEEEEcCccCCHHHHHHHHhhc----CcCEEEEecCCHHHHHHhhcch----------------HHHHHHHH
Q 023790 151 EDGYYRGEIGFILDGLPRSRIQAEILDQLA----EIDLVVNFKCADNFIVTNRGGS----------------LKEKLEAY 210 (277)
Q Consensus 151 ~~~~~~~~~g~IldGfPrt~~qae~l~~~~----~~d~vI~L~~~~e~l~~Rl~~~----------------~~~rl~~y 210 (277)
... +. . +.+.+...+...|++.+ ..=+-+||+++.++-.+|+.++ ..++++.|
T Consensus 133 ~g~-~~-~-----~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~~p~k~Wk~s~~D~~~~~~yd~y 205 (264)
T TIGR03709 133 HGL-IP-K-----AIWERRYEDINDFERYLTENGTTILKFFLHISKEEQKKRFLARLDDPTKNWKFSPADLKERAYWDDY 205 (264)
T ss_pred cCC-CC-H-----HHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHHHhcCCcccccCCHHHHHHHHhHHHH
Confidence 211 00 0 00111122333444432 2236889999999999999432 13445555
Q ss_pred HHhchhHHHHHH-hcCcEEEEeCCCC---HHHHHHHHHHHHHHcccc
Q 023790 211 AELGKPLEDYYQ-KQKKLLEFQVGSA---PLETWQGLLTALHLQHIN 253 (277)
Q Consensus 211 ~~~~~~l~~~y~-~~~~li~Ida~~s---~eev~~~I~~~L~~~~~~ 253 (277)
....+.+...=+ ....|+.|+++.. --.|.+-|++.|+..+..
T Consensus 206 ~~a~e~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~ll~~l~~~~~~ 252 (264)
T TIGR03709 206 MEAYEDALTATSTKHAPWYVVPADDKWFRRLAVAEILLDALESLDLK 252 (264)
T ss_pred HHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 555444433211 1246999997644 345777777777776544
No 309
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.18 E-value=0.017 Score=55.15 Aligned_cols=27 Identities=11% Similarity=0.201 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g 103 (277)
++.+|+++|+.|+||||.+..||.++.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999998763
No 310
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.0039 Score=62.78 Aligned_cols=37 Identities=22% Similarity=0.368 Sum_probs=31.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCc--cchhHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPR--ISMSSI 112 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~--Is~~dl 112 (277)
..+++++|.||||.|||++|+.+|+.+|-.+ +|.|-+
T Consensus 436 ~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~ 474 (906)
T KOG2004|consen 436 VQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGM 474 (906)
T ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEecccc
Confidence 5889999999999999999999999997654 555544
No 311
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.17 E-value=0.0054 Score=59.93 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=24.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCC
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~ 105 (277)
+..++|.||||+||||+|+.+|+.+++.
T Consensus 36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~~ 63 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVARILAKSLNCE 63 (472)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 3458999999999999999999998763
No 312
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.16 E-value=0.0028 Score=56.13 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHHHHHHHh
Q 023790 81 WAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 81 Ivi~G~pGSGKSTla~~La~~~ 102 (277)
-+|+|||||||||.|.-..+-+
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fl 26 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFL 26 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHH
Confidence 5799999999999998776654
No 313
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=96.14 E-value=0.17 Score=49.72 Aligned_cols=166 Identities=13% Similarity=0.076 Sum_probs=81.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHH---HHhcCCCChhHHHHHHHHhccccc--hHHHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV---RQDLSPRSSLHKQIANAVNRGEVV--SEDIIFGLLSKRL 150 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dll---r~~~~~~~~lg~~i~~~l~~G~~i--p~~~~~~ll~~~l 150 (277)
+.++.|+|.|..||||+++.+.|.+.++-..+.+-.+- .++. ....++..-+..=..|+.. ...+-...+..++
T Consensus 38 ~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~eE~-~~~flwRfw~~lP~~G~I~IFdRSWY~~vlverv 116 (493)
T TIGR03708 38 GFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSDEER-ERPPMWRFWRRLPPKGKIGIFFGSWYTRPLIERL 116 (493)
T ss_pred CCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCCHHHh-cCcHHHHHHHhCCCCCeEEEEcCcccchhhHHHh
Confidence 57899999999999999999999998754333221000 0000 0111222222111222211 1122222222222
Q ss_pred HcCCccCccEEEEcCccCCHHHHHHHHhhc----CcCEEEEecCCHHHHHHhhcch----------------HHHHHHHH
Q 023790 151 EDGYYRGEIGFILDGLPRSRIQAEILDQLA----EIDLVVNFKCADNFIVTNRGGS----------------LKEKLEAY 210 (277)
Q Consensus 151 ~~~~~~~~~g~IldGfPrt~~qae~l~~~~----~~d~vI~L~~~~e~l~~Rl~~~----------------~~~rl~~y 210 (277)
... +. . +-+.+...+...|++.+ ..=+-+||+++.++-.+|+.++ .+++.+.|
T Consensus 117 ~g~-~~-~-----~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk~EQ~kRl~~r~~~P~k~WK~s~~D~~~r~~wd~Y 189 (493)
T TIGR03708 117 EGR-ID-E-----AKLDSHIEDINRFERMLADDGALILKFWLHLSKKQQKERLKKLEKDPETRWRVTPEDWKQLKVYDRY 189 (493)
T ss_pred cCC-CC-H-----HHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCccccCCCHHHHHHHHhHHHH
Confidence 211 00 0 00111122333444432 2336899999999999999332 13445556
Q ss_pred HHhchhHHHHHH-hcCcEEEEeCCCC---HHHHHHHHHHHHHH
Q 023790 211 AELGKPLEDYYQ-KQKKLLEFQVGSA---PLETWQGLLTALHL 249 (277)
Q Consensus 211 ~~~~~~l~~~y~-~~~~li~Ida~~s---~eev~~~I~~~L~~ 249 (277)
....+.+...=+ +...|++|+++.. --.|.+.|++.|+.
T Consensus 190 ~~a~e~ml~~T~t~~APW~vI~addK~~arl~v~~~il~~L~~ 232 (493)
T TIGR03708 190 RKLAERMLRYTSTPYAPWTVVEGEDDRYRSLTVGRTLLAAIRA 232 (493)
T ss_pred HHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHHH
Confidence 555544433221 1236999997644 23355555555553
No 314
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.0043 Score=60.76 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=30.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccch--hHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVR 114 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~--~dllr 114 (277)
.+..+++.||||+|||.+|+.+|...+.++++. .+++-
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s 314 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS 314 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc
Confidence 344799999999999999999999877776555 34443
No 315
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.13 E-value=0.0052 Score=62.02 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=29.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
.++.+++||||-||||+|..+|+.-|+.++.+
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqaGYsVvEI 357 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQAGYSVVEI 357 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhcCceEEEe
Confidence 35679999999999999999999999988876
No 316
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.13 E-value=0.0046 Score=64.02 Aligned_cols=32 Identities=19% Similarity=0.344 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccc
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is 108 (277)
++..+++.||||+|||++|+.||+.++.+++.
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~ 377 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVR 377 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCeEE
Confidence 45579999999999999999999999876653
No 317
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.12 E-value=0.0051 Score=54.29 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
.++-.+.|+||+||||||+...|+-
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 6888999999999999999999874
No 318
>PRK08181 transposase; Validated
Probab=96.11 E-value=0.0075 Score=54.68 Aligned_cols=39 Identities=21% Similarity=0.328 Sum_probs=30.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh---C--CCccchhHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQ 115 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~---g--~~~Is~~dllr~ 115 (277)
++..++|.|+||+|||.++..++... | +.++++.+++.+
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~ 148 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK 148 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHH
Confidence 45679999999999999999998643 3 556777777654
No 319
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.11 E-value=0.076 Score=53.30 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=24.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCC
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~ 105 (277)
-.++|.||+|+||||+|+.||+.+++.
T Consensus 36 ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 36 HAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 347999999999999999999998874
No 320
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.10 E-value=0.0057 Score=56.31 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhC
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g 103 (277)
+.++|.||||+||||+|+.+++.+.
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3588999999999999999999873
No 321
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.09 E-value=0.0062 Score=56.86 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++.+|.|.|+|||||||++..|...+
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999987765
No 322
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.07 E-value=0.0052 Score=57.92 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=23.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCC
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~ 105 (277)
-.++|.||||+||||+|+.+++.+++.
T Consensus 39 h~~L~~Gp~G~GKTtla~~la~~l~c~ 65 (363)
T PRK14961 39 HAWLLSGTRGVGKTTIARLLAKSLNCQ 65 (363)
T ss_pred eEEEEecCCCCCHHHHHHHHHHHhcCC
Confidence 347999999999999999999998753
No 323
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.06 E-value=0.0056 Score=50.45 Aligned_cols=25 Identities=16% Similarity=0.112 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
+..+|+|+|++||||||+.+.|...
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 4678999999999999999999764
No 324
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.05 E-value=0.0079 Score=52.15 Aligned_cols=30 Identities=27% Similarity=0.226 Sum_probs=25.4
Q ss_pred CccCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 72 ~~~~~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
++.| ++..+.|.|+|||||||+|..++...
T Consensus 14 GGi~-~g~i~~i~G~~GsGKT~l~~~~a~~~ 43 (218)
T cd01394 14 GGVE-RGTVTQVYGPPGTGKTNIAIQLAVET 43 (218)
T ss_pred CCcc-CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444 78889999999999999999998764
No 325
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.015 Score=53.65 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=38.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCc--cchhHHHHHhcCCCChhHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPR--ISMSSIVRQDLSPRSSLHKQIANAV 131 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~--Is~~dllr~~~~~~~~lg~~i~~~l 131 (277)
+-|+.+.|.||||.|||-+|+.+++..|+.+ ++++.++...+ .+.++.|++.+
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyi---GEsaRlIRemf 218 (388)
T KOG0651|consen 164 KPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYI---GESARLIRDMF 218 (388)
T ss_pred CCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhc---ccHHHHHHHHH
Confidence 5677789999999999999999999998865 44555554432 23344455444
No 326
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.03 E-value=0.0066 Score=51.47 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.++-.|.|+||+||||||+-+.+|.-
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhc
Confidence 67788999999999999999999964
No 327
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=96.03 E-value=0.35 Score=42.86 Aligned_cols=166 Identities=9% Similarity=0.048 Sum_probs=81.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHH---HHhcCCCChhHHHHHHHHhccccc--hHHHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV---RQDLSPRSSLHKQIANAVNRGEVV--SEDIIFGLLSKRL 150 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dll---r~~~~~~~~lg~~i~~~l~~G~~i--p~~~~~~ll~~~l 150 (277)
+.+++|+|.|..||||+...+.|.+.++=..+.+-.+- .++. ....++..-+..=..|+.. ...+-...+..++
T Consensus 29 ~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~pt~eE~-~~p~lwRfw~~lP~~G~i~IF~rSwY~~~lv~rv 107 (230)
T TIGR03707 29 GARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKPSDRER-TQWYFQRYVQHLPAAGEIVLFDRSWYNRAGVERV 107 (230)
T ss_pred CCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHHHH-cChHHHHHHHhCCCCCeEEEEeCchhhhHHHHHh
Confidence 46899999999999999999999998855444331110 0000 0111222111111222211 1222223333333
Q ss_pred HcCCccCccEEEEcCccCCHHHHHHHHhhc----CcCEEEEecCCHHHHHHhhcch----------------HHHHHHHH
Q 023790 151 EDGYYRGEIGFILDGLPRSRIQAEILDQLA----EIDLVVNFKCADNFIVTNRGGS----------------LKEKLEAY 210 (277)
Q Consensus 151 ~~~~~~~~~g~IldGfPrt~~qae~l~~~~----~~d~vI~L~~~~e~l~~Rl~~~----------------~~~rl~~y 210 (277)
... +. . ..+.+...+...|++.+ ..-+-+||+++.++-.+|+.++ ..++.+.|
T Consensus 108 ~~~-~~-~-----~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~~p~k~Wk~~~~D~~~~~~yd~y 180 (230)
T TIGR03707 108 MGF-CT-D-----EEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARIDDPLKQWKLSPMDLASLDRWDDY 180 (230)
T ss_pred cCC-CC-H-----HHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCcccccCCHHHHHHHHhHHHH
Confidence 221 00 0 00111223334444432 2336889999999999999332 12345555
Q ss_pred HHhchhHHHHHHh-cCcEEEEeCCCCH---HHHHHHHHHHHHH
Q 023790 211 AELGKPLEDYYQK-QKKLLEFQVGSAP---LETWQGLLTALHL 249 (277)
Q Consensus 211 ~~~~~~l~~~y~~-~~~li~Ida~~s~---eev~~~I~~~L~~ 249 (277)
.+....+...=+. ...|++|+++..- -.|.+-|++.|+.
T Consensus 181 ~~a~e~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~i~~~l~~ 223 (230)
T TIGR03707 181 SRAKDEMFARTDTPEAPWTVVRSDDKKRARLNAIRHILSRLDY 223 (230)
T ss_pred HHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHhCCC
Confidence 5554444332211 2359999976542 2344444444443
No 328
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.03 E-value=0.0071 Score=54.38 Aligned_cols=29 Identities=14% Similarity=0.063 Sum_probs=24.8
Q ss_pred CccCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 72 ~~~~~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
++.| ++..++|.|+||+|||++|..++..
T Consensus 31 GGip-~gs~~lI~G~pGtGKT~l~~qf~~~ 59 (259)
T TIGR03878 31 GGIP-AYSVINITGVSDTGKSLMVEQFAVT 59 (259)
T ss_pred CCeE-CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4555 8889999999999999999988664
No 329
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.00 E-value=0.0076 Score=50.35 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..|.|+|++||||||+++.|...+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999876
No 330
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.00 E-value=0.0052 Score=48.94 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEccCCCccccceeeecccc
Confidence 367789999999999999999998754
No 331
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.98 E-value=0.0058 Score=59.63 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=24.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCC
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~ 105 (277)
-.++|.||||+||||+|+.||+.+++.
T Consensus 41 ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 458999999999999999999999874
No 332
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.98 E-value=0.0055 Score=63.02 Aligned_cols=33 Identities=18% Similarity=0.143 Sum_probs=28.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
.+..|+|.||||+|||++++.+++.++..++.+
T Consensus 211 ~~~giLL~GppGtGKT~laraia~~~~~~~i~i 243 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFISI 243 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEEEE
Confidence 445699999999999999999999998776543
No 333
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.97 E-value=0.0091 Score=58.51 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=23.5
Q ss_pred CccCCCCeEEEEEcCCCCChHHHHHHHH
Q 023790 72 GRERRRGVHWAFIGSPRAKKHVYAEMLS 99 (277)
Q Consensus 72 ~~~~~~~~~Ivi~G~pGSGKSTla~~La 99 (277)
++.| ++..++|.|+|||||||+|..++
T Consensus 16 GGlp-~g~~~Li~G~pGsGKT~la~qfl 42 (484)
T TIGR02655 16 GGLP-IGRSTLVSGTSGTGKTLFSIQFL 42 (484)
T ss_pred CCCC-CCeEEEEEcCCCCCHHHHHHHHH
Confidence 4555 88899999999999999999884
No 334
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=95.95 E-value=0.015 Score=54.46 Aligned_cols=159 Identities=19% Similarity=0.120 Sum_probs=89.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh---CCCccchh-HHHHHhcCCCChhHHHHHHHHhccccchHH---HHH--HHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMS-SIVRQDLSPRSSLHKQIANAVNRGEVVSED---IIF--GLL 146 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~---g~~~Is~~-dllr~~~~~~~~lg~~i~~~l~~G~~ip~~---~~~--~ll 146 (277)
-|+..|.+.|.+|+||||++-.|.+.+ |++..+.| |-+|+-+.++ -...|++ .+. .-+
T Consensus 48 frgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~kn-------------lgfs~edreenirriaev 114 (627)
T KOG4238|consen 48 FRGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKN-------------LGFSPEDREENIRRIAEV 114 (627)
T ss_pred ccceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhc-------------cCCCchhHHHHHHHHHHH
Confidence 477889999999999999999998865 77777664 5566543321 0111211 111 111
Q ss_pred HHHHHcCCccCccEEEE----cCccCCHHHHHHHHhh-cCcCEEEEecCCHHHHHHhhcchHHHHHHHHHHhc---hhHH
Q 023790 147 SKRLEDGYYRGEIGFIL----DGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNRGGSLKEKLEAYAELG---KPLE 218 (277)
Q Consensus 147 ~~~l~~~~~~~~~g~Il----dGfPrt~~qae~l~~~-~~~d~vI~L~~~~e~l~~Rl~~~~~~rl~~y~~~~---~~l~ 218 (277)
.+.... ..-+-| .-|......+..+.+. ..+-+-|+++++.+++.+|-...+-+.-. ..++ -.+.
T Consensus 115 aklfad-----aglvcitsfispf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~k~lykkar--agei~gftgid 187 (627)
T KOG4238|consen 115 AKLFAD-----AGLVCITSFISPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRDVKGLYKKAR--AGEIKGFTGID 187 (627)
T ss_pred HHHHhc-----CCceeeehhcChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcChHHHHhhhh--ccccccccccc
Confidence 121111 111222 3333334445555443 34557899999999999997433211110 0111 1233
Q ss_pred HHHHhcCc-EEEEeC-CCCHHHHHHHHHHHHHHccccc
Q 023790 219 DYYQKQKK-LLEFQV-GSAPLETWQGLLTALHLQHINA 254 (277)
Q Consensus 219 ~~y~~~~~-li~Ida-~~s~eev~~~I~~~L~~~~~~~ 254 (277)
.-|++... -+.+++ ..+..+.+++|.+.|+++++-+
T Consensus 188 s~ye~pe~~e~vl~t~~~~v~~cvqqvve~lq~~~ivp 225 (627)
T KOG4238|consen 188 SDYEKPETPERVLKTNLSTVSDCVQQVVELLQEQNIVP 225 (627)
T ss_pred cccCCCCChhHHhhcCCchHHHHHHHHHHHHHhcCCCh
Confidence 44554431 223344 4568999999999999988665
No 335
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.95 E-value=0.0076 Score=61.81 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~ 110 (277)
+...++|.||||+||||+|+.+++..+..++.+.
T Consensus 51 ~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~ln 84 (725)
T PRK13341 51 RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLN 84 (725)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCcceeeh
Confidence 4456899999999999999999998877665544
No 336
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=95.94 E-value=0.49 Score=41.05 Aligned_cols=20 Identities=5% Similarity=0.140 Sum_probs=18.7
Q ss_pred cCcCEEEEecCCHHHHHHhh
Q 023790 180 AEIDLVVNFKCADNFIVTNR 199 (277)
Q Consensus 180 ~~~d~vI~L~~~~e~l~~Rl 199 (277)
..+|.+|+|.+++|++.+|+
T Consensus 152 v~~dgiIYLrasPetc~~Ri 171 (244)
T KOG4235|consen 152 VSLDGIIYLRASPETCYKRI 171 (244)
T ss_pred cccceEEEeecChHHHHHHH
Confidence 47899999999999999998
No 337
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.94 E-value=0.0079 Score=54.82 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
++.+|.|+||.|+||||.+..|+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998865
No 338
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.93 E-value=0.0063 Score=58.88 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g 103 (277)
.+..|++.|+||+|||++|+.|++.++
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 456899999999999999999999875
No 339
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.0055 Score=57.36 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=34.9
Q ss_pred CCccCCCCeEEEEEcCCCCChHHHHHHHHHHhCCCccch--hHHHHHh
Q 023790 71 EGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQD 116 (277)
Q Consensus 71 ~~~~~~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~--~dllr~~ 116 (277)
.+..-+.++-|++.||||+|||-+|+.+|++-|..+|++ +.+..+.
T Consensus 120 ~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KW 167 (386)
T KOG0737|consen 120 KGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKW 167 (386)
T ss_pred ccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhh
Confidence 444444556699999999999999999999998877655 3444433
No 340
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.92 E-value=0.0064 Score=56.46 Aligned_cols=31 Identities=29% Similarity=0.460 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCcc
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~I 107 (277)
.+..+++.|+||+|||++++.+|+.+|.+++
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~ 72 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFV 72 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 4556999999999999999999999987653
No 341
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=95.92 E-value=0.0052 Score=54.12 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=25.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~d 111 (277)
+-+..++|.|+||+||||+|+.|+.+ ..+++.+.
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~ 43 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDM 43 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccc
Confidence 44677999999999999999999732 34455443
No 342
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.92 E-value=0.0072 Score=53.85 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
..+-.+.|+||+||||||+-+.+|-
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 5778899999999999999999984
No 343
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.91 E-value=0.0068 Score=52.77 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
-.++|.|+||+|||++|+++..-+
T Consensus 23 h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 23 HHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp --EEEES-CCCTHHHHHHHHHHCS
T ss_pred CCeEEECCCCCCHHHHHHHHHHhC
Confidence 469999999999999999998753
No 344
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.90 E-value=0.0073 Score=62.25 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=25.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCCcc
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~g~~~I 107 (277)
.++|.||||+|||++|+.||+.++.+++
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA~~l~~~~i 517 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKALGIELL 517 (758)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcE
Confidence 5899999999999999999999987654
No 345
>PRK06921 hypothetical protein; Provisional
Probab=95.90 E-value=0.016 Score=52.46 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh----CC--CccchhHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL----EV--PRISMSSIVR 114 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~----g~--~~Is~~dllr 114 (277)
....++|.|+||+|||.++..+++.+ |. .+++..+++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~ 159 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG 159 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHH
Confidence 35679999999999999999998864 33 3555555544
No 346
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.90 E-value=0.0075 Score=51.19 Aligned_cols=27 Identities=33% Similarity=0.383 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999998543
No 347
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.88 E-value=0.0037 Score=58.88 Aligned_cols=43 Identities=30% Similarity=0.325 Sum_probs=29.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC--CCc--cchhHHHHHhcC
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE--VPR--ISMSSIVRQDLS 118 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g--~~~--Is~~dllr~~~~ 118 (277)
..+.-|+|.||||+|||.+|-.+|+.+| +|+ ++..+++..+++
T Consensus 48 ~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~k 94 (398)
T PF06068_consen 48 IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVK 94 (398)
T ss_dssp -TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-
T ss_pred ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccC
Confidence 3567899999999999999999999997 454 444455544443
No 348
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.05 Score=55.52 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchh
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~ 110 (277)
-=|++.||||+|||-+|+.+|-++++.++|+.
T Consensus 706 SGILLYGPPGTGKTLlAKAVATEcsL~FlSVK 737 (953)
T KOG0736|consen 706 SGILLYGPPGTGKTLLAKAVATECSLNFLSVK 737 (953)
T ss_pred ceeEEECCCCCchHHHHHHHHhhceeeEEeec
Confidence 34999999999999999999999999998874
No 349
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.87 E-value=0.0094 Score=56.49 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++.+++|+||+|+||||++..|+.++
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467789999999999999999999864
No 350
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.87 E-value=0.0077 Score=51.94 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467789999999999999999998653
No 351
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.87 E-value=0.0083 Score=54.36 Aligned_cols=44 Identities=20% Similarity=0.259 Sum_probs=33.9
Q ss_pred CccCCCCeEEEEEcCCCCChHHHHHHHHHHhCC-----CccchhHHHHH
Q 023790 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEV-----PRISMSSIVRQ 115 (277)
Q Consensus 72 ~~~~~~~~~Ivi~G~pGSGKSTla~~La~~~g~-----~~Is~~dllr~ 115 (277)
++.+.+++.|++.|+-||||||.+++|..++.. -+|+.|-.+++
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~ 61 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRN 61 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhc
Confidence 345689999999999999999999999887632 24566655554
No 352
>PF13479 AAA_24: AAA domain
Probab=95.86 E-value=0.0062 Score=53.08 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
+++.+++|.|+||+||||+|..+ -+..+|++
T Consensus 1 ~~~~~~lIyG~~G~GKTt~a~~~---~k~l~id~ 31 (213)
T PF13479_consen 1 KKPIKILIYGPPGSGKTTLAASL---PKPLFIDT 31 (213)
T ss_pred CCceEEEEECCCCCCHHHHHHhC---CCeEEEEe
Confidence 36788999999999999999988 23345555
No 353
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.86 E-value=0.0091 Score=51.40 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=24.0
Q ss_pred CC-eEEEEEcCCCCChHHHHHHHHHHh----CCCcc
Q 023790 77 RG-VHWAFIGSPRAKKHVYAEMLSKLL----EVPRI 107 (277)
Q Consensus 77 ~~-~~Ivi~G~pGSGKSTla~~La~~~----g~~~I 107 (277)
++ .+|-|.||||||||++...+.+.+ .+.+|
T Consensus 11 ~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI 46 (202)
T COG0378 11 RPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVI 46 (202)
T ss_pred CceEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEE
Confidence 44 789999999999999987766554 55554
No 354
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=95.85 E-value=0.16 Score=43.18 Aligned_cols=110 Identities=9% Similarity=0.098 Sum_probs=64.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCC---CccchhHHHHHhcCCCChhHHHHHHHHhcccc------------------ch
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLLEV---PRISMSSIVRQDLSPRSSLHKQIANAVNRGEV------------------VS 138 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~g~---~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~------------------ip 138 (277)
+|+|.|..+|||-+++..|.++++. ..+++.+=++.+... ..|..+...+..+.. -|
T Consensus 1 iilisGKrksGKD~~a~~l~~~l~~~~~~~vriS~piK~~~A~--~~gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp 78 (182)
T TIGR01223 1 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQ--EHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADP 78 (182)
T ss_pred CEEEecCCCCChHHHHHHHHHhhccccceEEEecHHHHHHHHH--HhChhHHHhcCCcccchhhhHHHHHHHHHHHhhCc
Confidence 4899999999999999999999874 245665555444321 111111112211110 11
Q ss_pred HHHHHHHHHHHHHcCCccCccEEEEcCccCCHHHHHHHHhhcC-cCEEEEecCCHHHHHHhh
Q 023790 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAE-IDLVVNFKCADNFIVTNR 199 (277)
Q Consensus 139 ~~~~~~ll~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~~~~-~d~vI~L~~~~e~l~~Rl 199 (277)
+...+.+. .. ....-|||+|. |.....+.|.+..+ .-+.|-+.+++++..+|.
T Consensus 79 -~~F~r~~~---~~---~~~~v~iIsD~-Rr~~dv~~f~~~~g~~~~~VRV~AseetR~~Rg 132 (182)
T TIGR01223 79 -GFFCRKIV---EG---ISQPIWLVSDT-RRVSDIQWFREAYGAVTQTVRVVALEQSRQQRG 132 (182)
T ss_pred -cHHHHHHH---hc---cCCCEEEEeCC-CcccHHHHHHHHcCCceEEEEEecCHHHHHHHH
Confidence 11111111 11 12357888886 55556677766533 336889999999999887
No 355
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=95.84 E-value=0.0081 Score=48.93 Aligned_cols=21 Identities=14% Similarity=0.170 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHHH
Q 023790 80 HWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~ 100 (277)
+|+|+|+||+||||+..++..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999975
No 356
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.84 E-value=0.0078 Score=50.46 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHHHHHHH
Q 023790 81 WAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 81 Ivi~G~pGSGKSTla~~La~~ 101 (277)
++|.|+||+|||+++..++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~ 22 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYA 22 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999988664
No 357
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.84 E-value=0.0081 Score=52.00 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 477889999999999999999998654
No 358
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.83 E-value=0.0084 Score=56.68 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g 103 (277)
+|..|.|+|.+||||||+++.|.+++.
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~ 30 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLS 30 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 789999999999999999999998875
No 359
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.83 E-value=0.0081 Score=52.01 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 477889999999999999999999654
No 360
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.82 E-value=0.0094 Score=54.60 Aligned_cols=29 Identities=17% Similarity=0.039 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCc
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPR 106 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~ 106 (277)
+..+++.|+||+||||+++.+++.++..+
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~~~~~~~ 71 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCNEVGAEV 71 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCccc
Confidence 44566689999999999999999876543
No 361
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.82 E-value=0.0096 Score=51.48 Aligned_cols=28 Identities=29% Similarity=0.281 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g 103 (277)
...++|.|+|++||||||+.+.+.+.++
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4678899999999999999999988754
No 362
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.81 E-value=0.0077 Score=51.93 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+ ++.|+|+.||||||+.+.|+..
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCC
Confidence 46 8999999999999999999854
No 363
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=95.81 E-value=0.0089 Score=48.18 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+|+|+|.||+||||+..++...
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999863
No 364
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.80 E-value=0.0098 Score=54.60 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++.+|.|.|+|||||||++..|+..+
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 467889999999999999999998865
No 365
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.80 E-value=0.0063 Score=52.93 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=20.2
Q ss_pred EEEEcCCCCChHHHHHHHHHHh
Q 023790 81 WAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 81 Ivi~G~pGSGKSTla~~La~~~ 102 (277)
|+|.|+|||||||..+.+.+..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 5899999999999999999884
No 366
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.80 E-value=0.0082 Score=62.18 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccc
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is 108 (277)
++..++|.||||+||||+++.+++.++..++.
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~ 379 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKATGRKYVR 379 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 56679999999999999999999999877643
No 367
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.80 E-value=0.0089 Score=51.58 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 477889999999999999999999653
No 368
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.77 E-value=0.0083 Score=56.02 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=27.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV 113 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dll 113 (277)
..+-.++|.||+||||||+.+.+| |+.-++.|++.
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IA---GLe~~~~G~I~ 61 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIA---GLEEPTSGEIL 61 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCceEE
Confidence 567789999999999999999999 55555555543
No 369
>PRK10867 signal recognition particle protein; Provisional
Probab=95.77 E-value=0.01 Score=57.36 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++.+|+++|++||||||.+..||..+
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 357889999999999999888888754
No 370
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.77 E-value=0.01 Score=58.53 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=25.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCc
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPR 106 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~ 106 (277)
+..++|.||||+||||+|+.+|+.+++.+
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~ 71 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVNCSA 71 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 45689999999999999999999998754
No 371
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.77 E-value=0.0091 Score=51.79 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 578889999999999999999998643
No 372
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.77 E-value=0.0093 Score=51.37 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 477889999999999999999998643
No 373
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.76 E-value=0.0077 Score=66.62 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=31.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccc--hhHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS--MSSIVR 114 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is--~~dllr 114 (277)
.+.=|+++||||+|||.+|+.||...+++.|+ ..+++.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence 34559999999999999999999999998654 456664
No 374
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.76 E-value=0.0091 Score=51.54 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 577889999999999999999998653
No 375
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.0066 Score=58.21 Aligned_cols=29 Identities=14% Similarity=0.356 Sum_probs=26.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 81 Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
.++.||||+||||...++|..+++.+.+.
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L~ydIydL 266 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYLNYDIYDL 266 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhcCCceEEe
Confidence 68999999999999999999998876654
No 376
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.74 E-value=0.0086 Score=52.51 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 477889999999999999999998643
No 377
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=95.74 E-value=0.0092 Score=48.41 Aligned_cols=22 Identities=9% Similarity=0.013 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHH
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~ 101 (277)
+|+|+|.||+||||+..++...
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999764
No 378
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.74 E-value=0.0096 Score=51.29 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 477789999999999999999999643
No 379
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=95.73 E-value=0.01 Score=46.86 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+|+++|.+||||||+...+...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~ 24 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGN 24 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999988764
No 380
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.73 E-value=0.0086 Score=61.61 Aligned_cols=37 Identities=27% Similarity=0.344 Sum_probs=29.0
Q ss_pred CCCe-EEEEEcCCCCChHHHHHHHHHHhCCCc--cchhHH
Q 023790 76 RRGV-HWAFIGSPRAKKHVYAEMLSKLLEVPR--ISMSSI 112 (277)
Q Consensus 76 ~~~~-~Ivi~G~pGSGKSTla~~La~~~g~~~--Is~~dl 112 (277)
.+|. .++|.||+|+|||++|+.||+.++..+ +++.+.
T Consensus 481 ~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~ 520 (731)
T TIGR02639 481 NKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEY 520 (731)
T ss_pred CCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchh
Confidence 4454 589999999999999999999997654 444443
No 381
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.73 E-value=0.0096 Score=51.63 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999998643
No 382
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.72 E-value=0.0095 Score=52.30 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 577889999999999999999998653
No 383
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=95.72 E-value=0.0098 Score=47.60 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
|.+|+++|++|+||||+...+...
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~ 24 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGR 24 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCC
Confidence 467999999999999999998754
No 384
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=95.71 E-value=0.0093 Score=48.35 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+|+|+|+|||||||+.+++...
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999743
No 385
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.70 E-value=0.01 Score=51.56 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 477889999999999999999998653
No 386
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.70 E-value=0.0098 Score=50.97 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 477889999999999999999998643
No 387
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.70 E-value=0.01 Score=51.17 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 577889999999999999999998543
No 388
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.69 E-value=0.0096 Score=49.44 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
+|.|+|++||||||++..|.+.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998875
No 389
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.69 E-value=0.011 Score=49.86 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
..+-++.|+|+.||||||+.+.|+..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 47788999999999999999999854
No 390
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.68 E-value=0.009 Score=53.63 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
+.+..|+|.|++||||||+...|.+..
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~~i 151 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLEEI 151 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHHHC
T ss_pred ccceEEEEECCCccccchHHHHHhhhc
Confidence 357889999999999999999998865
No 391
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.68 E-value=0.01 Score=51.20 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 477889999999999999999998643
No 392
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=95.68 E-value=0.011 Score=48.02 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHH
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~ 100 (277)
.+|+|+|.||+||||++.++..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~ 23 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQ 23 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999998875
No 393
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.68 E-value=0.012 Score=52.92 Aligned_cols=39 Identities=21% Similarity=0.351 Sum_probs=31.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh---CC--CccchhHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL---EV--PRISMSSIVRQ 115 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~---g~--~~Is~~dllr~ 115 (277)
++..+++.|+||+|||.+|..++.++ |+ .++.+.+++.+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~ 147 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSK 147 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 56789999999999999999998865 33 45777777765
No 394
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.67 E-value=0.11 Score=52.00 Aligned_cols=29 Identities=24% Similarity=0.302 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCC
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~ 105 (277)
-+..++|.|++|+||||+|+.|++.+++.
T Consensus 37 ~~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 37 VAHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 34457999999999999999999998764
No 395
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.67 E-value=0.01 Score=50.94 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=16.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+|-||||+||||+...+....
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 68999999999997666666544
No 396
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.66 E-value=0.01 Score=50.98 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467789999999999999999998643
No 397
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.66 E-value=0.01 Score=52.13 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 577889999999999999999998643
No 398
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.66 E-value=0.012 Score=52.99 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.+..+|-|.|+||+||||+...|.+.|
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 356789999999999999999998876
No 399
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.66 E-value=0.013 Score=51.31 Aligned_cols=26 Identities=15% Similarity=0.098 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.++..+.|.|+||||||++|..++..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 48899999999999999999999754
No 400
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.66 E-value=0.011 Score=51.56 Aligned_cols=28 Identities=21% Similarity=0.200 Sum_probs=23.7
Q ss_pred CccCCCCeEEEEEcCCCCChHHHHHHHHH
Q 023790 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 72 ~~~~~~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
++.| ++..++|.|+||||||++|..++.
T Consensus 14 GGip-~gs~~li~G~~GsGKT~l~~q~l~ 41 (226)
T PF06745_consen 14 GGIP-KGSVVLISGPPGSGKTTLALQFLY 41 (226)
T ss_dssp TSEE-TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCC-CCcEEEEEeCCCCCcHHHHHHHHH
Confidence 4555 788999999999999999998654
No 401
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.65 E-value=0.012 Score=52.58 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.+.+++|+|++||||||++..|-..+
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~ 37 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYL 37 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 66789999999999999888876543
No 402
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.65 E-value=0.0089 Score=58.89 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~ 104 (277)
+-.++|.||||+||||+|+.+++.+.+
T Consensus 36 ~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 36 GHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 345799999999999999999999865
No 403
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.65 E-value=0.011 Score=50.48 Aligned_cols=27 Identities=11% Similarity=0.095 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 467789999999999999999998653
No 404
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.64 E-value=0.011 Score=51.60 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 477889999999999999999999765
No 405
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.64 E-value=0.012 Score=56.72 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++.+|++.|++||||||.+..||..+
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 457789999999999999999998764
No 406
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.63 E-value=0.011 Score=52.13 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 477889999999999999999998643
No 407
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=95.63 E-value=0.013 Score=48.51 Aligned_cols=33 Identities=18% Similarity=0.064 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~ 110 (277)
.+.-++|.|++|+||||+|..|.++ |+..++-|
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD 45 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKR-GHRLVADD 45 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECC
Confidence 4567999999999999999988876 66666443
No 408
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.63 E-value=0.011 Score=52.62 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.++-.+-|+|++||||||+++.|+-.
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcc
Confidence 57888999999999999999999853
No 409
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.62 E-value=0.011 Score=51.54 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 578889999999999999999998653
No 410
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.072 Score=52.49 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=30.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
+-|+=|++.||||+|||-+|+.+|-+-|++++.+
T Consensus 335 KLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~ 368 (752)
T KOG0734|consen 335 KLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYA 368 (752)
T ss_pred cCCCceEEeCCCCCchhHHHHHhhcccCCCeEec
Confidence 4455699999999999999999999999998765
No 411
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.61 E-value=0.011 Score=51.74 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 577889999999999999999998754
No 412
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=95.61 E-value=0.014 Score=57.53 Aligned_cols=42 Identities=17% Similarity=0.186 Sum_probs=30.2
Q ss_pred cccccCCCCCCccCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 023790 62 LRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~Ivi~G~pGSGKSTla~~La~~~g 103 (277)
-.++|..+-.+..-..|.++.++||||+||||+.+.|..++.
T Consensus 53 klhVPmvdrtp~d~PPPfIvavvGPpGtGKsTLirSlVrr~t 94 (1077)
T COG5192 53 KLHVPMVDRTPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFT 94 (1077)
T ss_pred ccccccccCCcccCCCCeEEEeecCCCCChhHHHHHHHHHHH
Confidence 345666543333322566677999999999999999999874
No 413
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=95.61 E-value=0.0093 Score=47.97 Aligned_cols=21 Identities=14% Similarity=0.139 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHHH
Q 023790 80 HWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~ 100 (277)
+|+|+|++||||||+...+..
T Consensus 1 ki~i~G~~~~GKTsli~~l~~ 21 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVK 21 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999864
No 414
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.61 E-value=0.01 Score=51.25 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 477889999999999999999998643
No 415
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.60 E-value=0.012 Score=49.34 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999998643
No 416
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.60 E-value=0.012 Score=49.53 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|.|+.||||||+.+.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 477789999999999999999998643
No 417
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.60 E-value=0.011 Score=52.03 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999998654
No 418
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.60 E-value=0.011 Score=56.56 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=23.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCC
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLLEVP 105 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~g~~ 105 (277)
-++|.||||+||||+|..+|+.+++.
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 48899999999999999999999874
No 419
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.60 E-value=0.011 Score=51.66 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 578889999999999999999999654
No 420
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=95.59 E-value=0.011 Score=48.18 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHH
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~ 100 (277)
.+|+|+|++|+||||+..+|..
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~ 22 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVE 22 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999999864
No 421
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=95.58 E-value=0.011 Score=47.12 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHHH
Q 023790 80 HWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~ 100 (277)
+|+++|+|||||||+...+..
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~ 22 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVD 22 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998864
No 422
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.58 E-value=0.011 Score=51.33 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 477889999999999999999998643
No 423
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.58 E-value=0.012 Score=51.73 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 467789999999999999999998643
No 424
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.57 E-value=0.0099 Score=61.83 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=24.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCC
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~ 105 (277)
-.++|.|+||+||||+|+.|++.+++.
T Consensus 39 HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 39 HAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 346899999999999999999999875
No 425
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.57 E-value=0.011 Score=58.79 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCC
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEV 104 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~ 104 (277)
-.++|.||||+||||+|+.+|+.+++
T Consensus 39 ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 39 HAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34789999999999999999999876
No 426
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.57 E-value=0.013 Score=42.94 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.+++.|.+|+||||++..|+..+
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l 23 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAAL 23 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 37889999999999999999876
No 427
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.57 E-value=0.012 Score=51.11 Aligned_cols=27 Identities=37% Similarity=0.575 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999998643
No 428
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.57 E-value=0.0095 Score=55.91 Aligned_cols=28 Identities=11% Similarity=0.122 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g 103 (277)
+.+..|+|.|++||||||+.+.|.....
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccC
Confidence 4678899999999999999999998753
No 429
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.56 E-value=0.39 Score=46.71 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=27.6
Q ss_pred EEEEcCCCCChHHHHHHHHHHh-------CCCccchhHHHHH
Q 023790 81 WAFIGSPRAKKHVYAEMLSKLL-------EVPRISMSSIVRQ 115 (277)
Q Consensus 81 Ivi~G~pGSGKSTla~~La~~~-------g~~~Is~~dllr~ 115 (277)
++|.|++|+|||++++.++..+ .+.+++..+++..
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~ 185 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARK 185 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH
Confidence 8999999999999999998843 3346777666654
No 430
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.56 E-value=0.012 Score=50.26 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
..+-++.|+|++||||||+.+.|+-
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4678899999999999999999985
No 431
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=95.56 E-value=0.013 Score=52.51 Aligned_cols=29 Identities=14% Similarity=0.292 Sum_probs=25.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~ 104 (277)
.++-++.|+|++|+||||+++.+++....
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 47889999999999999999999987654
No 432
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=95.56 E-value=0.011 Score=48.42 Aligned_cols=22 Identities=9% Similarity=0.083 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHH
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~ 101 (277)
+|+|+|++||||||+.+++...
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988653
No 433
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=95.56 E-value=0.012 Score=48.18 Aligned_cols=23 Identities=9% Similarity=0.059 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+|+|+|.+|+||||+..+|...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~ 23 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTG 23 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999764
No 434
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.56 E-value=0.013 Score=49.11 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++-++.|+|+.||||||+.+.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 577889999999999999999998643
No 435
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.55 E-value=0.012 Score=51.40 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.++-.+.|+|+.||||||+.+.|+..
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 57788999999999999999999864
No 436
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.55 E-value=0.012 Score=49.69 Aligned_cols=27 Identities=26% Similarity=0.144 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999998654
No 437
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=95.55 E-value=0.011 Score=52.38 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|++||||||+++.|+..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 27 YPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 477889999999999999999999754
No 438
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.55 E-value=0.012 Score=52.08 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+|+.||||||+.+.|+-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 477889999999999999999998654
No 439
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=95.55 E-value=0.014 Score=55.19 Aligned_cols=27 Identities=19% Similarity=0.081 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.+++.|.|+|.+||||||+++.|..++
T Consensus 203 ~~~~~~~~~g~~~~GKtt~~~~l~~~l 229 (366)
T PRK14489 203 GAPPLLGVVGYSGTGKTTLLEKLIPEL 229 (366)
T ss_pred CCccEEEEecCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998876
No 440
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.55 E-value=0.012 Score=59.59 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=25.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCc
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPR 106 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~ 106 (277)
+-.++|.||||+||||+|+.||+.+++.+
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~~ 65 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLNCET 65 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 45679999999999999999999998743
No 441
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.55 E-value=0.012 Score=51.39 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999998643
No 442
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.54 E-value=0.013 Score=48.90 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|.|+.||||||+++.|+..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 577889999999999999999998654
No 443
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.54 E-value=0.011 Score=55.43 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
..+-.+.+.||+||||||+.+.||-
T Consensus 29 ~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 29 KKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 5677899999999999999999984
No 444
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.54 E-value=0.012 Score=51.68 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 577889999999999999999998653
No 445
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.54 E-value=0.012 Score=51.99 Aligned_cols=27 Identities=19% Similarity=0.492 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+++.|+..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999999754
No 446
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.53 E-value=0.28 Score=42.95 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=26.7
Q ss_pred EEEEcCCCCChHHHHHHHHHHh-------CCCccchhHHHHH
Q 023790 81 WAFIGSPRAKKHVYAEMLSKLL-------EVPRISMSSIVRQ 115 (277)
Q Consensus 81 Ivi~G~pGSGKSTla~~La~~~-------g~~~Is~~dllr~ 115 (277)
++|.|++|+|||.+.+.++.++ .+.+++..+..+.
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~ 78 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIRE 78 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHH
Confidence 7899999999999999998764 2346666666543
No 447
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.52 E-value=0.012 Score=51.33 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|++||||||+.+.|+..+
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 367789999999999999999999754
No 448
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.52 E-value=0.013 Score=50.22 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++-++.|.|+.||||||+.+.|+..+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 578889999999999999999998643
No 449
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.52 E-value=0.015 Score=53.30 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
+....|-|+|+|||||||+.+.+.+.+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 567889999999999999999888765
No 450
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.52 E-value=0.012 Score=51.70 Aligned_cols=26 Identities=15% Similarity=0.305 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
..+-++.|+|+.||||||+.+.|+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 57788999999999999999999865
No 451
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=95.52 E-value=0.013 Score=49.18 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
.+..+|+|+|++||||||+...|..
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~ 36 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKN 36 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHS
T ss_pred CcEEEEEEECCCccchHHHHHHhhh
Confidence 5778999999999999999999975
No 452
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.51 E-value=0.012 Score=57.78 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=24.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCC
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~ 105 (277)
--++|.||||+||||+|+.+|+.+++.
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 359999999999999999999988764
No 453
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.51 E-value=0.018 Score=40.46 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=19.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
.+...+|.|+.||||||+...+.=
T Consensus 22 ~g~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 344789999999999999887753
No 454
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=95.51 E-value=0.012 Score=52.51 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+|+.||||||+++.|+..+
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 578889999999999999999999754
No 455
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.51 E-value=0.018 Score=50.13 Aligned_cols=35 Identities=23% Similarity=0.193 Sum_probs=28.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh-----CCCccchh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMS 110 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~-----g~~~Is~~ 110 (277)
.++..+.|.|+||+|||++|..++... .+.+++++
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 488999999999999999999998643 34456554
No 456
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=95.50 E-value=0.013 Score=48.20 Aligned_cols=23 Identities=9% Similarity=0.076 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+|+|+|.||+||||+.+++.+.
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~ 24 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQN 24 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999754
No 457
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.49 E-value=0.014 Score=49.26 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 577889999999999999999998643
No 458
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.49 E-value=0.018 Score=54.81 Aligned_cols=27 Identities=19% Similarity=0.058 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++.+|+|+||.|+||||.+..||..+
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l 230 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQL 230 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 567889999999999999999999765
No 459
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=95.49 E-value=0.12 Score=45.75 Aligned_cols=31 Identities=19% Similarity=0.008 Sum_probs=25.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCc
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPR 106 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~ 106 (277)
..+++|+|.|..||||+.+.+.|.+.++=.+
T Consensus 29 ~~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~ 59 (228)
T PF03976_consen 29 GIPVLILFEGWDASGKGGTINRLIEWLDPRG 59 (228)
T ss_dssp HHEEEEEEEESTTSSHHHHHHHHHCCS-GGG
T ss_pred CCcEEEEEeccccCCchHHHHHHHHhCCCCe
Confidence 3558999999999999999999998875433
No 460
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.49 E-value=0.013 Score=50.21 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+|++||||||+.+.|+..+
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 578889999999999999999998653
No 461
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.48 E-value=0.013 Score=49.83 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 467789999999999999999998643
No 462
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=95.48 E-value=0.013 Score=47.41 Aligned_cols=21 Identities=10% Similarity=0.048 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHHH
Q 023790 80 HWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~ 100 (277)
+|+++|+||+||||+..++..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~ 22 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMY 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999874
No 463
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.48 E-value=0.013 Score=52.07 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 477889999999999999999999653
No 464
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.47 E-value=0.014 Score=50.24 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
..+-.+.|+|+.||||||+.+.|+..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 47788999999999999999999854
No 465
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.47 E-value=0.013 Score=52.35 Aligned_cols=27 Identities=11% Similarity=0.287 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 577889999999999999999999653
No 466
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.46 E-value=0.016 Score=57.04 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=23.8
Q ss_pred CccCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 72 ~~~~~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
++.| ++-.++|.|+||+|||+++..++..
T Consensus 268 GG~~-~g~~~li~G~~G~GKT~l~~~~~~~ 296 (509)
T PRK09302 268 GGFF-RGSIILVSGATGTGKTLLASKFAEA 296 (509)
T ss_pred CCCC-CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3444 6778899999999999999988754
No 467
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=95.46 E-value=0.015 Score=48.90 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
.+..+|+|+|++||||||+..++..
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3567789999999999999999975
No 468
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.46 E-value=0.013 Score=51.35 Aligned_cols=27 Identities=26% Similarity=0.446 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 23 ERGERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 578889999999999999999998653
No 469
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=95.46 E-value=0.012 Score=47.68 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
+.+|+++|.+|+||||+...|...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~ 25 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGE 25 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCc
Confidence 567999999999999999999764
No 470
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.46 E-value=0.013 Score=51.87 Aligned_cols=26 Identities=15% Similarity=0.205 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
..+-++.|+|+.||||||+.+.|+..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 27 FKNQITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 47788999999999999999999954
No 471
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.45 E-value=0.014 Score=51.54 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999998643
No 472
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.45 E-value=0.013 Score=52.16 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
...+.++|.||||+||||-+..||.++
T Consensus 46 gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred CCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 466789999999999999999999875
No 473
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=95.45 E-value=0.013 Score=51.32 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467789999999999999999999754
No 474
>PRK10646 ADP-binding protein; Provisional
Probab=95.45 E-value=0.02 Score=47.63 Aligned_cols=45 Identities=11% Similarity=0.048 Sum_probs=33.6
Q ss_pred cccchHhhhccccccCCCCCCccCCCCeEEEEEcCCCCChHHHHHHHHHHhCCC
Q 023790 52 ESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (277)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ivi~G~pGSGKSTla~~La~~~g~~ 105 (277)
+++-.+++..+.... +.+.+|++.|.-|+||||+++.|++.+|+.
T Consensus 11 ~~~t~~l~~~la~~l---------~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~~ 55 (153)
T PRK10646 11 EQATLDLGARVAKAC---------DGATVIYLYGDLGAGKTTFSRGFLQALGHQ 55 (153)
T ss_pred HHHHHHHHHHHHHhC---------CCCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 445556666543221 245679999999999999999999999873
No 475
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.45 E-value=0.014 Score=51.80 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 467889999999999999999999754
No 476
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.44 E-value=0.013 Score=54.37 Aligned_cols=26 Identities=12% Similarity=0.123 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.+..|+|.|++||||||+.+.|...+
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 56789999999999999999998764
No 477
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=95.44 E-value=0.013 Score=52.31 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 577889999999999999999999654
No 478
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.43 E-value=0.013 Score=52.07 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
..+-.++|+|++||||||+.+.|+--
T Consensus 28 ~~Ge~~~i~G~nGsGKSTL~~~l~GL 53 (235)
T COG1122 28 EKGERVLLIGPNGSGKSTLLKLLNGL 53 (235)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCc
Confidence 57888999999999999999999754
No 479
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.43 E-value=0.014 Score=50.76 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
..+-++.|+|+.||||||+.+.|+..
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46778999999999999999999864
No 480
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.42 E-value=0.014 Score=51.85 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++-++.|+|+.||||||+.+.|+..+
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 28 PQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 577889999999999999999999754
No 481
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=95.42 E-value=0.015 Score=50.84 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|++||||||+.+.|+..+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 577889999999999999999998654
No 482
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.42 E-value=0.015 Score=48.39 Aligned_cols=26 Identities=38% Similarity=0.511 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
..+-.+.|+|+.||||||+.+.|+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 57788999999999999999999854
No 483
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.42 E-value=0.014 Score=51.05 Aligned_cols=27 Identities=15% Similarity=0.358 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+++.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 26 PAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 477789999999999999999998654
No 484
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.41 E-value=0.015 Score=48.53 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|.|+.||||||+.+.|+..+
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 477889999999999999999998754
No 485
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=95.41 E-value=0.014 Score=51.83 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+|++||||||+.+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 24 AAGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 477889999999999999999998643
No 486
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=95.41 E-value=0.014 Score=51.35 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 27 NSGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 477889999999999999999999754
No 487
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.41 E-value=0.014 Score=52.06 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|++||||||+.+.|+..+
T Consensus 36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 36 PENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 467789999999999999999999654
No 488
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=95.40 E-value=0.062 Score=50.47 Aligned_cols=107 Identities=12% Similarity=0.081 Sum_probs=64.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccc-hHHHHHHHHHHHHHcCCccC
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVV-SEDIIFGLLSKRLEDGYYRG 157 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~i-p~~~~~~ll~~~l~~~~~~~ 157 (277)
..+++.|+.|||||++...|.+. |...||+.++.+.. ++.+|.. +..- +.......|...+... ..
T Consensus 142 ~~ivl~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aehr---GS~fG~~-------~~~qpsQ~~Fe~~l~~~l~~~--~~ 208 (345)
T PRK11784 142 PLVVLGGNTGSGKTELLQALANA-GAQVLDLEGLANHR---GSSFGRL-------GGPQPSQKDFENLLAEALLKL--DP 208 (345)
T ss_pred ceEecCCCCcccHHHHHHHHHhc-CCeEEECCchhhhc---cccccCC-------CCCCcchHHHHHHHHHHHHcC--CC
Confidence 45789999999999999999876 77788887766532 3333321 1111 2223345555566554 23
Q ss_pred ccEEEEcCccCCHHHH----HHHHhhcCcCEEEEecCCHHHHHHhh
Q 023790 158 EIGFILDGLPRSRIQA----EILDQLAEIDLVVNFKCADNFIVTNR 199 (277)
Q Consensus 158 ~~g~IldGfPrt~~qa----e~l~~~~~~d~vI~L~~~~e~l~~Rl 199 (277)
...+++++-.+..-.. ..++.+. -.-+|++++|.+..++|+
T Consensus 209 ~~~i~vE~Es~~IG~~~lP~~l~~~m~-~~~~v~i~~~~e~Rv~~l 253 (345)
T PRK11784 209 ARPIVVEDESRRIGRVHLPEALYEAMQ-QAPIVVVEAPLEERVERL 253 (345)
T ss_pred CCeEEEEeccccccCccCCHHHHHHHh-hCCEEEEECCHHHHHHHH
Confidence 4566776543322110 1122221 235889999999999998
No 489
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=95.40 E-value=0.017 Score=47.55 Aligned_cols=24 Identities=17% Similarity=0.066 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
..+|+|+|+||+||||+..++...
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~ 26 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSED 26 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 468999999999999999999753
No 490
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.39 E-value=0.069 Score=51.24 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=25.5
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 75 ~~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
++.|.+|.+.|.=||||||.|..||.+|
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~l 124 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYL 124 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHH
Confidence 4678899999999999999999999976
No 491
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.39 E-value=0.014 Score=50.33 Aligned_cols=27 Identities=15% Similarity=0.199 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 577889999999999999999998754
No 492
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.39 E-value=0.015 Score=50.74 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 477889999999999999999998653
No 493
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.38 E-value=0.015 Score=50.75 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 27 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 477789999999999999999998654
No 494
>PRK10908 cell division protein FtsE; Provisional
Probab=95.38 E-value=0.015 Score=50.55 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+|+.||||||+.+.|+-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 577889999999999999999998543
No 495
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.38 E-value=0.015 Score=51.00 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++-.+.|+|+.||||||+.+.|+..+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 25 PAGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 478889999999999999999998654
No 496
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.37 E-value=0.015 Score=54.19 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.+..|+|.|++||||||+.+.|....
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999998865
No 497
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.37 E-value=0.014 Score=57.67 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=24.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCC
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~ 105 (277)
--++|.||||+||||+|+.||+.+++.
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 39 HAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 357999999999999999999999874
No 498
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=95.37 E-value=0.015 Score=51.20 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999999654
No 499
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.37 E-value=0.015 Score=51.63 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
..+-++.|+|+.||||||+++.|+..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 29 NQNEITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46778999999999999999999864
No 500
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.37 E-value=0.017 Score=51.48 Aligned_cols=28 Identities=18% Similarity=0.269 Sum_probs=24.7
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 75 ~~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
...+-++.|+|+.||||||+.+.|+..+
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578899999999999999999998753
Done!