Query 023790
Match_columns 277
No_of_seqs 183 out of 1538
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 12:50:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023790.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023790hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3umf_A Adenylate kinase; rossm 100.0 2.2E-38 7.6E-43 276.3 22.8 176 76-252 27-216 (217)
2 3sr0_A Adenylate kinase; phosp 100.0 7.1E-38 2.4E-42 271.1 19.0 167 79-250 1-205 (206)
3 3gmt_A Adenylate kinase; ssgci 100.0 5.6E-34 1.9E-38 250.0 18.4 171 77-249 7-229 (230)
4 3tlx_A Adenylate kinase 2; str 100.0 1.8E-29 6.2E-34 222.8 22.5 171 76-248 27-242 (243)
5 3dl0_A Adenylate kinase; phosp 100.0 9.4E-29 3.2E-33 213.0 19.2 169 79-249 1-214 (216)
6 3fb4_A Adenylate kinase; psych 100.0 2.3E-28 7.8E-33 210.3 20.1 169 79-249 1-214 (216)
7 1aky_A Adenylate kinase; ATP:A 100.0 4.4E-28 1.5E-32 209.7 20.7 171 76-248 2-218 (220)
8 3be4_A Adenylate kinase; malar 100.0 2.9E-28 9.9E-33 210.9 19.3 170 76-247 3-217 (217)
9 1ak2_A Adenylate kinase isoenz 100.0 4.3E-28 1.5E-32 212.1 20.5 173 75-249 13-230 (233)
10 1e4v_A Adenylate kinase; trans 100.0 3.3E-27 1.1E-31 203.5 17.9 167 79-247 1-213 (214)
11 2xb4_A Adenylate kinase; ATP-b 99.9 1.2E-26 4.2E-31 201.8 20.2 166 79-247 1-222 (223)
12 1zd8_A GTP:AMP phosphotransfer 99.9 5.4E-26 1.8E-30 197.6 19.6 171 76-250 5-215 (227)
13 1ukz_A Uridylate kinase; trans 99.9 2.1E-25 7.3E-30 189.9 22.0 175 75-249 12-201 (203)
14 2c95_A Adenylate kinase 1; tra 99.9 1.9E-25 6.7E-30 188.3 21.2 173 76-249 7-193 (196)
15 2cdn_A Adenylate kinase; phosp 99.9 1.2E-25 4.2E-30 191.5 19.2 170 75-248 17-200 (201)
16 1qf9_A UMP/CMP kinase, protein 99.9 8.4E-25 2.9E-29 183.4 21.4 171 77-250 5-192 (194)
17 1zak_A Adenylate kinase; ATP:A 99.9 1.6E-25 5.3E-30 193.9 17.2 171 77-250 4-211 (222)
18 1tev_A UMP-CMP kinase; ploop, 99.9 9E-25 3.1E-29 183.5 21.0 173 77-249 2-194 (196)
19 2bwj_A Adenylate kinase 5; pho 99.9 6.3E-25 2.2E-29 185.6 19.5 173 77-250 11-197 (199)
20 3cm0_A Adenylate kinase; ATP-b 99.9 5.9E-25 2E-29 184.3 18.4 166 76-248 2-185 (186)
21 2bbw_A Adenylate kinase 4, AK4 99.9 1E-20 3.5E-25 166.3 21.0 170 77-250 26-235 (246)
22 3lw7_A Adenylate kinase relate 99.8 3.8E-17 1.3E-21 133.8 16.9 160 79-249 2-176 (179)
23 2pbr_A DTMP kinase, thymidylat 99.7 4.3E-16 1.5E-20 130.4 19.0 153 79-249 1-191 (195)
24 4eaq_A DTMP kinase, thymidylat 99.7 1.1E-16 3.6E-21 140.0 15.8 169 76-250 24-225 (229)
25 3t61_A Gluconokinase; PSI-biol 99.7 4.3E-16 1.5E-20 132.3 14.9 161 77-256 17-186 (202)
26 3vaa_A Shikimate kinase, SK; s 99.7 4.5E-16 1.5E-20 132.3 14.7 158 76-250 23-196 (199)
27 4hlc_A DTMP kinase, thymidylat 99.7 2.3E-15 8E-20 129.5 18.7 162 77-249 1-200 (205)
28 3v9p_A DTMP kinase, thymidylat 99.7 2.2E-16 7.4E-21 138.1 11.6 172 76-249 23-226 (227)
29 2wwf_A Thymidilate kinase, put 99.7 1.6E-16 5.5E-21 135.2 10.2 168 76-250 8-200 (212)
30 1nks_A Adenylate kinase; therm 99.7 8.8E-16 3E-20 128.2 13.6 162 78-247 1-193 (194)
31 2z0h_A DTMP kinase, thymidylat 99.6 6.9E-15 2.4E-19 123.5 17.7 157 79-249 1-191 (197)
32 2v54_A DTMP kinase, thymidylat 99.6 2.1E-15 7.1E-20 127.5 14.2 161 77-250 3-191 (204)
33 2plr_A DTMP kinase, probable t 99.6 4.4E-15 1.5E-19 125.9 14.8 158 77-249 3-207 (213)
34 2pt5_A Shikimate kinase, SK; a 99.6 3.1E-15 1.1E-19 122.8 13.2 152 79-251 1-165 (168)
35 4tmk_A Protein (thymidylate ki 99.6 7.7E-15 2.6E-19 127.0 15.6 167 77-250 2-207 (213)
36 2iyv_A Shikimate kinase, SK; t 99.6 1.4E-14 4.8E-19 120.9 15.5 153 78-249 2-168 (184)
37 1e6c_A Shikimate kinase; phosp 99.6 5.5E-15 1.9E-19 121.8 12.8 153 78-248 2-169 (173)
38 1nn5_A Similar to deoxythymidy 99.6 1.5E-15 5.1E-20 129.3 9.6 167 76-250 7-201 (215)
39 4edh_A DTMP kinase, thymidylat 99.6 2.8E-14 9.5E-19 123.5 17.2 169 76-250 4-207 (213)
40 3lv8_A DTMP kinase, thymidylat 99.6 6.9E-15 2.4E-19 129.3 13.5 168 76-250 25-229 (236)
41 1kht_A Adenylate kinase; phosp 99.6 6.6E-15 2.3E-19 122.8 12.8 160 77-247 2-191 (192)
42 1ly1_A Polynucleotide kinase; 99.6 4.3E-15 1.5E-19 122.8 11.3 157 78-249 2-172 (181)
43 1zuh_A Shikimate kinase; alpha 99.6 6.5E-15 2.2E-19 121.3 12.2 152 77-247 6-167 (168)
44 3hjn_A DTMP kinase, thymidylat 99.6 4E-14 1.4E-18 120.9 17.4 163 79-250 1-192 (197)
45 1via_A Shikimate kinase; struc 99.6 3.6E-15 1.2E-19 123.8 10.1 155 78-250 4-167 (175)
46 3trf_A Shikimate kinase, SK; a 99.6 5.1E-14 1.7E-18 117.4 15.6 159 77-250 4-175 (185)
47 2rhm_A Putative kinase; P-loop 99.6 5.6E-15 1.9E-19 123.6 9.7 117 76-202 3-125 (193)
48 1vht_A Dephospho-COA kinase; s 99.6 2.9E-14 1E-18 122.3 14.1 161 77-249 3-194 (218)
49 1jjv_A Dephospho-COA kinase; P 99.6 7.7E-14 2.6E-18 118.5 16.5 157 78-249 2-196 (206)
50 1y63_A LMAJ004144AAA protein; 99.6 1.9E-14 6.6E-19 120.7 12.2 154 76-248 8-173 (184)
51 3kb2_A SPBC2 prophage-derived 99.6 5.3E-14 1.8E-18 115.3 14.6 144 79-250 2-167 (173)
52 3a4m_A L-seryl-tRNA(SEC) kinas 99.6 2.2E-14 7.6E-19 127.1 12.6 157 77-250 3-174 (260)
53 2vli_A Antibiotic resistance p 99.6 1.2E-13 4.3E-18 114.6 15.7 154 75-250 2-172 (183)
54 3nwj_A ATSK2; P loop, shikimat 99.6 4.6E-14 1.6E-18 125.0 13.7 160 78-250 48-237 (250)
55 1cke_A CK, MSSA, protein (cyti 99.5 3.5E-14 1.2E-18 122.1 11.3 163 78-250 5-223 (227)
56 3tmk_A Thymidylate kinase; pho 99.5 4.1E-14 1.4E-18 122.8 10.0 168 76-250 3-203 (216)
57 2f6r_A COA synthase, bifunctio 99.5 5.7E-13 2E-17 119.6 17.5 167 74-249 71-268 (281)
58 1knq_A Gluconate kinase; ALFA/ 99.5 1.3E-12 4.3E-17 108.0 18.3 154 76-249 6-173 (175)
59 2jaq_A Deoxyguanosine kinase; 99.5 7.8E-13 2.7E-17 111.2 17.2 161 79-249 1-200 (205)
60 2if2_A Dephospho-COA kinase; a 99.5 2.8E-13 9.5E-18 114.8 14.0 165 79-254 2-196 (204)
61 1kag_A SKI, shikimate kinase I 99.5 2.5E-13 8.4E-18 111.9 12.8 155 77-249 3-172 (173)
62 1ltq_A Polynucleotide kinase; 99.5 3.8E-14 1.3E-18 127.2 8.5 131 78-213 2-146 (301)
63 4eun_A Thermoresistant glucoki 99.5 9.1E-13 3.1E-17 111.8 16.0 159 76-250 27-194 (200)
64 3ld9_A DTMP kinase, thymidylat 99.5 1.4E-13 4.8E-18 119.9 10.9 168 76-250 19-216 (223)
65 3iij_A Coilin-interacting nucl 99.5 1.7E-13 5.9E-18 114.0 10.7 154 76-249 9-173 (180)
66 1uf9_A TT1252 protein; P-loop, 99.5 9E-13 3.1E-17 111.0 14.0 162 75-249 5-193 (203)
67 1m7g_A Adenylylsulfate kinase; 99.5 3.6E-13 1.2E-17 115.2 11.7 164 76-253 23-206 (211)
68 3ake_A Cytidylate kinase; CMP 99.4 1.3E-12 4.5E-17 110.4 13.6 159 80-248 4-207 (208)
69 4i1u_A Dephospho-COA kinase; s 99.4 7E-12 2.4E-16 108.2 16.0 163 77-250 8-202 (210)
70 2h92_A Cytidylate kinase; ross 99.4 4E-13 1.4E-17 115.0 7.6 165 77-250 2-218 (219)
71 2yvu_A Probable adenylyl-sulfa 99.4 2.5E-12 8.5E-17 107.5 12.3 159 76-249 11-183 (186)
72 2grj_A Dephospho-COA kinase; T 99.4 2.3E-12 7.8E-17 109.7 10.9 155 76-249 10-186 (192)
73 1q3t_A Cytidylate kinase; nucl 99.4 7.9E-12 2.7E-16 108.7 14.5 166 75-249 13-234 (236)
74 1p5z_B DCK, deoxycytidine kina 99.4 1.7E-12 6E-17 114.7 10.2 69 181-250 174-259 (263)
75 2qt1_A Nicotinamide riboside k 99.3 6.7E-13 2.3E-17 112.9 5.8 165 76-249 19-205 (207)
76 1uj2_A Uridine-cytidine kinase 99.3 1.3E-12 4.5E-17 114.9 7.4 163 76-249 20-233 (252)
77 3hdt_A Putative kinase; struct 99.3 4.3E-11 1.5E-15 104.1 15.7 168 77-251 13-220 (223)
78 4e22_A Cytidylate kinase; P-lo 99.3 3.3E-11 1.1E-15 106.2 14.8 166 76-250 25-245 (252)
79 3fdi_A Uncharacterized protein 99.3 7.4E-11 2.5E-15 100.8 15.9 160 77-250 5-199 (201)
80 1qhx_A CPT, protein (chloramph 99.3 2.4E-11 8.2E-16 100.3 12.3 162 77-247 2-176 (178)
81 2pez_A Bifunctional 3'-phospho 99.3 5.2E-11 1.8E-15 98.8 12.6 161 76-251 3-177 (179)
82 2qor_A Guanylate kinase; phosp 99.2 7.9E-11 2.7E-15 100.0 12.2 162 76-250 10-197 (204)
83 3uie_A Adenylyl-sulfate kinase 99.2 3.3E-10 1.1E-14 95.9 13.2 162 76-252 23-197 (200)
84 3r20_A Cytidylate kinase; stru 99.2 5.9E-10 2E-14 97.6 14.5 41 76-116 7-47 (233)
85 1gtv_A TMK, thymidylate kinase 99.2 2E-12 6.9E-17 109.8 -1.5 164 79-245 1-209 (214)
86 2p5t_B PEZT; postsegregational 99.1 7E-11 2.4E-15 104.0 7.9 118 76-202 30-157 (253)
87 1gvn_B Zeta; postsegregational 99.1 1.9E-10 6.4E-15 103.5 10.3 115 76-199 31-159 (287)
88 1x6v_B Bifunctional 3'-phospho 99.1 5.2E-10 1.8E-14 110.6 13.9 165 76-254 50-227 (630)
89 3zvl_A Bifunctional polynucleo 99.1 6.9E-10 2.3E-14 104.8 13.5 99 74-201 254-356 (416)
90 2gks_A Bifunctional SAT/APS ki 99.1 4.3E-10 1.5E-14 109.8 12.4 162 76-251 370-542 (546)
91 2vp4_A Deoxynucleoside kinase; 99.0 7.8E-10 2.7E-14 95.8 9.8 67 180-249 145-224 (230)
92 2ocp_A DGK, deoxyguanosine kin 99.0 8E-10 2.7E-14 96.2 6.8 69 181-249 149-233 (241)
93 1m8p_A Sulfate adenylyltransfe 98.9 7.8E-09 2.7E-13 101.4 12.3 162 76-252 394-569 (573)
94 2axn_A 6-phosphofructo-2-kinas 98.9 2.2E-09 7.4E-14 104.3 6.4 135 76-218 33-202 (520)
95 2j41_A Guanylate kinase; GMP, 98.8 3.8E-08 1.3E-12 82.6 10.6 159 77-251 5-188 (207)
96 3tr0_A Guanylate kinase, GMP k 98.8 2.4E-08 8.2E-13 83.8 9.4 159 77-253 6-190 (205)
97 2ze6_A Isopentenyl transferase 98.7 5.8E-08 2E-12 85.5 9.4 35 79-113 2-36 (253)
98 3tau_A Guanylate kinase, GMP k 98.7 4.7E-07 1.6E-11 77.0 14.4 161 76-251 6-190 (208)
99 1zp6_A Hypothetical protein AT 98.6 2.2E-08 7.4E-13 83.3 4.9 162 76-251 7-177 (191)
100 2bdt_A BH3686; alpha-beta prot 98.6 9.8E-07 3.3E-11 73.3 14.0 113 78-201 2-121 (189)
101 3cr8_A Sulfate adenylyltranfer 98.5 2.2E-07 7.4E-12 90.8 9.7 159 76-252 367-542 (552)
102 1p6x_A Thymidine kinase; P-loo 98.5 1.3E-07 4.4E-12 86.8 7.1 29 76-104 5-33 (334)
103 3ch4_B Pmkase, phosphomevalona 98.5 3.4E-07 1.2E-11 78.2 9.1 158 77-250 10-190 (202)
104 3asz_A Uridine kinase; cytidin 98.5 5.9E-07 2E-11 75.9 9.4 39 76-114 4-44 (211)
105 1kgd_A CASK, peripheral plasma 98.4 2.7E-06 9.1E-11 70.5 12.3 159 75-249 2-178 (180)
106 1bif_A 6-phosphofructo-2-kinas 98.3 6.3E-07 2.2E-11 85.6 7.2 116 76-199 37-169 (469)
107 3a8t_A Adenylate isopentenyltr 98.3 4.9E-07 1.7E-11 83.0 5.2 36 77-112 39-74 (339)
108 2jeo_A Uridine-cytidine kinase 98.3 2.4E-05 8.1E-10 67.9 15.6 30 76-105 23-52 (245)
109 3a00_A Guanylate kinase, GMP k 98.3 1.3E-05 4.4E-10 66.6 13.0 158 79-249 2-184 (186)
110 3lnc_A Guanylate kinase, GMP k 98.2 7.8E-06 2.7E-10 70.1 11.1 27 76-102 25-52 (231)
111 1rz3_A Hypothetical protein rb 98.2 1.3E-06 4.6E-11 73.6 5.6 27 76-102 20-46 (201)
112 1ex7_A Guanylate kinase; subst 98.2 7.9E-06 2.7E-10 68.8 9.5 154 81-249 4-184 (186)
113 1osn_A Thymidine kinase, VZV-T 98.1 8.6E-06 2.9E-10 74.8 9.9 29 76-104 10-39 (341)
114 3czq_A Putative polyphosphate 98.1 3.5E-05 1.2E-09 69.6 11.9 153 76-250 84-279 (304)
115 1e2k_A Thymidine kinase; trans 98.0 1E-05 3.4E-10 74.1 8.3 28 76-103 2-29 (331)
116 1of1_A Thymidine kinase; trans 98.0 1.1E-05 3.7E-10 75.1 7.7 28 76-103 47-74 (376)
117 3crm_A TRNA delta(2)-isopenten 97.9 3.2E-06 1.1E-10 77.2 2.4 36 77-112 4-39 (323)
118 1a7j_A Phosphoribulokinase; tr 97.8 3.5E-06 1.2E-10 75.7 0.2 38 77-114 4-46 (290)
119 1dek_A Deoxynucleoside monopho 97.8 1.5E-05 5.1E-10 69.8 4.2 39 79-117 2-40 (241)
120 3ney_A 55 kDa erythrocyte memb 97.8 0.0001 3.6E-09 62.5 9.1 28 76-103 17-44 (197)
121 3czp_A Putative polyphosphate 97.7 0.00026 8.9E-09 68.2 12.4 29 76-104 41-69 (500)
122 3czp_A Putative polyphosphate 97.7 0.00025 8.4E-09 68.3 11.4 149 76-249 298-492 (500)
123 3d3q_A TRNA delta(2)-isopenten 97.6 1.7E-05 5.7E-10 72.9 2.6 34 79-112 8-41 (340)
124 3exa_A TRNA delta(2)-isopenten 97.6 2.3E-05 7.9E-10 71.3 2.5 36 77-112 2-37 (322)
125 3foz_A TRNA delta(2)-isopenten 97.5 3.6E-05 1.2E-09 69.8 3.3 36 76-111 8-43 (316)
126 4gp7_A Metallophosphoesterase; 97.5 0.0012 4.2E-08 53.8 12.3 105 76-200 7-119 (171)
127 1g8f_A Sulfate adenylyltransfe 97.5 3.8E-05 1.3E-09 74.2 3.3 36 76-111 393-435 (511)
128 3t15_A Ribulose bisphosphate c 97.5 5.8E-05 2E-09 67.5 4.1 38 76-113 34-73 (293)
129 2ga8_A Hypothetical 39.9 kDa p 97.4 4.2E-05 1.4E-09 70.6 2.0 30 77-106 23-52 (359)
130 3c8u_A Fructokinase; YP_612366 97.4 5.9E-05 2E-09 63.7 2.7 36 76-111 20-60 (208)
131 3ec2_A DNA replication protein 97.3 0.00019 6.4E-09 58.8 4.8 38 77-114 37-80 (180)
132 2qz4_A Paraplegin; AAA+, SPG7, 97.3 0.00017 5.7E-09 62.3 4.1 33 77-109 38-70 (262)
133 1lv7_A FTSH; alpha/beta domain 97.3 0.00016 5.6E-09 62.6 4.0 31 79-109 46-76 (257)
134 4b4t_M 26S protease regulatory 97.2 0.00016 5.4E-09 68.5 3.8 33 77-109 214-246 (434)
135 1sq5_A Pantothenate kinase; P- 97.2 0.00017 5.7E-09 64.9 3.6 37 76-112 78-121 (308)
136 4b4t_L 26S protease subunit RP 97.2 0.00019 6.5E-09 68.0 3.8 33 77-109 214-246 (437)
137 4b4t_K 26S protease regulatory 97.2 0.0002 6.7E-09 67.7 3.8 32 78-109 206-237 (428)
138 3eph_A TRNA isopentenyltransfe 97.2 0.00015 5E-09 68.1 2.8 33 79-111 3-35 (409)
139 4b4t_J 26S protease regulatory 97.2 0.00018 6.1E-09 67.5 3.3 32 78-109 182-213 (405)
140 3h4m_A Proteasome-activating n 97.2 0.00021 7.3E-09 62.6 3.6 33 77-109 50-82 (285)
141 3hws_A ATP-dependent CLP prote 97.2 0.00022 7.7E-09 65.2 3.8 33 77-109 50-82 (363)
142 3cf0_A Transitional endoplasmi 97.2 0.0002 7E-09 63.9 3.4 39 77-115 48-88 (301)
143 3b9p_A CG5977-PA, isoform A; A 97.2 0.00023 7.8E-09 62.9 3.7 32 77-108 53-84 (297)
144 3tqc_A Pantothenate kinase; bi 97.2 0.00023 7.8E-09 64.8 3.8 37 76-112 90-133 (321)
145 1d2n_A N-ethylmaleimide-sensit 97.1 0.00027 9.4E-09 61.8 4.1 33 77-109 63-95 (272)
146 2x8a_A Nuclear valosin-contain 97.1 0.00025 8.5E-09 62.8 3.8 28 81-108 47-74 (274)
147 1g41_A Heat shock protein HSLU 97.1 0.00021 7.2E-09 67.8 3.3 34 77-110 49-82 (444)
148 1ye8_A Protein THEP1, hypothet 97.1 0.0003 1E-08 58.3 3.5 26 79-104 1-26 (178)
149 3rhf_A Putative polyphosphate 97.0 0.0054 1.9E-07 54.7 11.5 156 76-253 73-271 (289)
150 1ofh_A ATP-dependent HSL prote 97.0 0.00031 1.1E-08 61.9 3.4 32 77-108 49-80 (310)
151 4b4t_H 26S protease regulatory 97.0 0.00028 9.7E-09 67.2 3.3 33 77-109 242-274 (467)
152 3eie_A Vacuolar protein sortin 97.0 0.00035 1.2E-08 62.9 3.8 33 77-109 50-82 (322)
153 2qmh_A HPR kinase/phosphorylas 97.0 0.0003 1E-08 59.9 3.0 35 76-111 32-66 (205)
154 4b4t_I 26S protease regulatory 97.0 0.00037 1.3E-08 65.8 3.8 33 77-109 215-247 (437)
155 1odf_A YGR205W, hypothetical 3 97.0 0.00049 1.7E-08 61.6 4.3 38 76-113 29-74 (290)
156 1um8_A ATP-dependent CLP prote 97.0 0.00038 1.3E-08 63.9 3.5 33 77-109 71-103 (376)
157 1jbk_A CLPB protein; beta barr 97.0 0.00056 1.9E-08 55.1 4.1 26 77-102 42-67 (195)
158 1lvg_A Guanylate kinase, GMP k 97.0 0.00041 1.4E-08 58.2 3.2 26 77-102 3-28 (198)
159 3syl_A Protein CBBX; photosynt 96.9 0.00038 1.3E-08 61.6 3.1 27 76-102 65-91 (309)
160 2r62_A Cell division protease 96.9 0.00024 8.2E-09 61.8 1.8 29 81-109 47-75 (268)
161 2p65_A Hypothetical protein PF 96.9 0.0004 1.4E-08 56.0 3.0 26 77-102 42-67 (187)
162 1ixz_A ATP-dependent metallopr 96.9 0.00049 1.7E-08 59.5 3.5 29 81-109 52-80 (254)
163 1in4_A RUVB, holliday junction 96.9 0.00063 2.1E-08 61.7 4.0 28 79-106 52-79 (334)
164 2w58_A DNAI, primosome compone 96.9 0.00082 2.8E-08 55.8 4.4 36 79-114 55-95 (202)
165 1xwi_A SKD1 protein; VPS4B, AA 96.9 0.00059 2E-08 61.7 3.7 31 77-107 44-75 (322)
166 2qp9_X Vacuolar protein sortin 96.8 0.00056 1.9E-08 62.7 3.4 35 79-113 85-121 (355)
167 3bos_A Putative DNA replicatio 96.8 0.00075 2.6E-08 56.8 3.9 27 77-103 51-77 (242)
168 3d8b_A Fidgetin-like protein 1 96.8 0.0007 2.4E-08 62.0 3.7 33 77-109 116-148 (357)
169 3pfi_A Holliday junction ATP-d 96.8 0.00079 2.7E-08 60.5 3.7 32 78-109 55-86 (338)
170 2c9o_A RUVB-like 1; hexameric 96.7 0.00076 2.6E-08 63.8 3.6 32 78-109 63-96 (456)
171 1iy2_A ATP-dependent metallopr 96.7 0.00082 2.8E-08 59.0 3.5 29 81-109 76-104 (278)
172 3n70_A Transport activator; si 96.7 0.00089 3E-08 53.1 3.4 24 79-102 25-48 (145)
173 1z6g_A Guanylate kinase; struc 96.7 0.00087 3E-08 57.0 3.3 27 76-102 21-47 (218)
174 3aez_A Pantothenate kinase; tr 96.7 0.0013 4.3E-08 59.5 4.4 27 76-102 88-114 (312)
175 1znw_A Guanylate kinase, GMP k 96.7 0.0011 3.7E-08 55.7 3.8 28 76-103 18-45 (207)
176 1s96_A Guanylate kinase, GMP k 96.7 0.0011 3.9E-08 56.7 3.8 28 76-103 14-41 (219)
177 1svm_A Large T antigen; AAA+ f 96.7 0.0011 3.9E-08 61.5 4.1 33 76-108 167-199 (377)
178 2ce7_A Cell division protein F 96.6 0.0012 3.9E-08 63.3 4.1 30 80-109 51-80 (476)
179 3vfd_A Spastin; ATPase, microt 96.6 0.0011 3.7E-08 61.3 3.8 33 77-109 147-179 (389)
180 1xjc_A MOBB protein homolog; s 96.6 0.0013 4.4E-08 54.3 3.8 26 77-102 3-28 (169)
181 2kjq_A DNAA-related protein; s 96.6 0.0012 4E-08 53.0 3.4 26 77-102 35-60 (149)
182 1kjw_A Postsynaptic density pr 96.6 0.01 3.4E-07 53.2 9.7 156 76-250 103-282 (295)
183 2wjg_A FEOB, ferrous iron tran 96.6 0.0016 5.4E-08 52.8 4.0 28 74-101 3-30 (188)
184 4fcw_A Chaperone protein CLPB; 96.5 0.0015 5.2E-08 57.6 4.0 24 79-102 48-71 (311)
185 1l8q_A Chromosomal replication 96.5 0.0014 4.8E-08 58.7 3.8 37 77-113 36-77 (324)
186 1njg_A DNA polymerase III subu 96.5 0.0018 6E-08 53.9 4.1 26 79-104 46-71 (250)
187 3cf2_A TER ATPase, transitiona 96.5 0.001 3.4E-08 67.6 3.0 37 77-113 237-275 (806)
188 1sxj_A Activator 1 95 kDa subu 96.5 0.0013 4.6E-08 63.2 3.7 32 78-109 77-108 (516)
189 2chg_A Replication factor C sm 96.5 0.0015 5E-08 53.8 3.5 23 80-102 40-62 (226)
190 1sxj_D Activator 1 41 kDa subu 96.5 0.002 6.9E-08 57.8 4.5 23 81-103 61-83 (353)
191 1c9k_A COBU, adenosylcobinamid 96.5 0.0012 4.1E-08 55.1 2.7 24 81-105 2-25 (180)
192 1tue_A Replication protein E1; 96.5 0.0014 4.9E-08 56.0 3.1 29 78-106 58-86 (212)
193 3uk6_A RUVB-like 2; hexameric 96.4 0.0017 5.9E-08 58.8 3.7 27 78-104 70-96 (368)
194 2cvh_A DNA repair and recombin 96.4 0.0021 7.2E-08 53.6 3.9 25 77-101 19-43 (220)
195 2ehv_A Hypothetical protein PH 96.4 0.0018 6.2E-08 55.1 3.5 24 76-99 28-51 (251)
196 1hqc_A RUVB; extended AAA-ATPa 96.4 0.0016 5.5E-08 57.9 3.2 29 79-107 39-67 (324)
197 2zan_A Vacuolar protein sortin 96.4 0.0017 5.7E-08 61.4 3.5 37 77-113 166-205 (444)
198 4a74_A DNA repair and recombin 96.4 0.002 6.7E-08 54.1 3.6 27 76-102 23-49 (231)
199 3m6a_A ATP-dependent protease 96.4 0.0018 6.3E-08 62.7 3.6 31 77-107 107-137 (543)
200 3te6_A Regulatory protein SIR3 96.4 0.00074 2.5E-08 61.3 0.7 27 76-102 43-69 (318)
201 3co5_A Putative two-component 96.3 0.00062 2.1E-08 53.9 0.2 25 79-103 28-52 (143)
202 2r44_A Uncharacterized protein 96.3 0.0013 4.3E-08 59.1 2.2 29 79-107 47-75 (331)
203 3pvs_A Replication-associated 96.3 0.0021 7.1E-08 61.0 3.8 31 79-109 51-81 (447)
204 1vma_A Cell division protein F 96.3 0.0042 1.4E-07 56.0 5.6 27 76-102 102-128 (306)
205 1np6_A Molybdopterin-guanine d 96.3 0.0027 9.3E-08 52.5 3.9 26 77-102 5-30 (174)
206 2w0m_A SSO2452; RECA, SSPF, un 96.3 0.0026 8.9E-08 53.2 3.9 25 77-101 22-46 (235)
207 3b9q_A Chloroplast SRP recepto 96.3 0.0044 1.5E-07 55.7 5.5 27 76-102 98-124 (302)
208 3ihw_A Centg3; RAS, centaurin, 96.3 0.0028 9.7E-08 51.8 3.9 27 75-101 17-43 (184)
209 3pxg_A Negative regulator of g 96.3 0.0026 9E-08 60.4 4.2 26 77-102 200-225 (468)
210 1htw_A HI0065; nucleotide-bind 96.2 0.0036 1.2E-07 50.8 4.2 27 76-102 31-57 (158)
211 2i3b_A HCR-ntpase, human cance 96.2 0.0026 9E-08 53.2 3.4 24 79-102 2-25 (189)
212 2dhr_A FTSH; AAA+ protein, hex 96.2 0.0024 8.3E-08 61.4 3.5 29 81-109 67-95 (499)
213 2orw_A Thymidine kinase; TMTK, 96.2 0.0031 1.1E-07 52.4 3.7 26 77-102 2-27 (184)
214 2v1u_A Cell division control p 96.2 0.002 6.7E-08 58.3 2.7 26 77-102 43-68 (387)
215 2oil_A CATX-8, RAS-related pro 96.2 0.0032 1.1E-07 51.4 3.7 27 75-101 22-48 (193)
216 1n0w_A DNA repair protein RAD5 96.2 0.0027 9.2E-08 53.8 3.4 25 77-101 23-47 (243)
217 1upt_A ARL1, ADP-ribosylation 96.2 0.004 1.4E-07 49.3 4.2 26 76-101 5-30 (171)
218 2qby_B CDC6 homolog 3, cell di 96.2 0.0029 1E-07 57.4 3.8 26 77-102 44-69 (384)
219 2qby_A CDC6 homolog 1, cell di 96.2 0.0026 8.8E-08 57.3 3.4 26 77-102 44-69 (386)
220 1z06_A RAS-related protein RAB 96.2 0.0031 1.1E-07 51.3 3.5 27 75-101 17-43 (189)
221 3hu3_A Transitional endoplasmi 96.2 0.0026 9.1E-08 60.9 3.5 37 77-113 237-275 (489)
222 2r2a_A Uncharacterized protein 96.2 0.0033 1.1E-07 53.1 3.7 25 76-100 3-27 (199)
223 1z2a_A RAS-related protein RAB 96.2 0.0033 1.1E-07 49.5 3.6 26 76-101 3-28 (168)
224 3e70_C DPA, signal recognition 96.2 0.0038 1.3E-07 56.8 4.3 27 76-102 127-153 (328)
225 2a5j_A RAS-related protein RAB 96.2 0.0044 1.5E-07 50.5 4.4 27 75-101 18-44 (191)
226 2v9p_A Replication protein E1; 96.1 0.0034 1.2E-07 56.6 3.9 27 76-102 124-150 (305)
227 2qgz_A Helicase loader, putati 96.1 0.0033 1.1E-07 56.4 3.8 38 78-115 152-195 (308)
228 2eyu_A Twitching motility prot 96.1 0.0041 1.4E-07 54.6 4.3 27 76-102 23-49 (261)
229 2h17_A ADP-ribosylation factor 96.1 0.0027 9.1E-08 51.4 2.8 28 74-101 17-44 (181)
230 2chq_A Replication factor C sm 96.1 0.005 1.7E-07 54.2 4.8 23 80-102 40-62 (319)
231 1sxj_E Activator 1 40 kDa subu 96.1 0.0042 1.4E-07 55.9 4.3 22 81-102 39-60 (354)
232 1m7b_A RND3/RHOE small GTP-bin 96.1 0.0035 1.2E-07 50.9 3.4 27 75-101 4-30 (184)
233 2hxs_A RAB-26, RAS-related pro 96.1 0.0044 1.5E-07 49.5 3.9 26 76-101 4-29 (178)
234 1rj9_A FTSY, signal recognitio 96.0 0.0042 1.4E-07 55.9 4.0 26 77-102 101-126 (304)
235 1kao_A RAP2A; GTP-binding prot 96.0 0.0044 1.5E-07 48.5 3.7 25 77-101 2-26 (167)
236 1ypw_A Transitional endoplasmi 96.0 0.0027 9.1E-08 64.5 2.8 34 76-109 236-269 (806)
237 1g8p_A Magnesium-chelatase 38 96.0 0.0024 8.3E-08 57.2 2.3 23 81-103 48-70 (350)
238 2f1r_A Molybdopterin-guanine d 96.0 0.002 6.7E-08 53.1 1.5 25 78-102 2-26 (171)
239 2ce2_X GTPase HRAS; signaling 96.0 0.0044 1.5E-07 48.4 3.5 24 78-101 3-26 (166)
240 1fnn_A CDC6P, cell division co 96.0 0.0042 1.4E-07 56.2 3.8 24 79-102 45-68 (389)
241 3pxi_A Negative regulator of g 96.0 0.0044 1.5E-07 62.2 4.2 26 77-102 200-225 (758)
242 3con_A GTPase NRAS; structural 96.0 0.0042 1.5E-07 50.4 3.4 26 76-101 19-44 (190)
243 3u61_B DNA polymerase accessor 96.0 0.0031 1.1E-07 56.3 2.8 31 79-109 49-79 (324)
244 2dyk_A GTP-binding protein; GT 96.0 0.005 1.7E-07 48.2 3.7 23 79-101 2-24 (161)
245 2og2_A Putative signal recogni 95.9 0.0077 2.6E-07 55.5 5.4 27 76-102 155-181 (359)
246 2y8e_A RAB-protein 6, GH09086P 95.9 0.0043 1.5E-07 49.4 3.2 26 75-100 11-36 (179)
247 4bas_A ADP-ribosylation factor 95.9 0.0043 1.5E-07 50.6 3.3 27 74-100 13-39 (199)
248 2fn4_A P23, RAS-related protei 95.9 0.0055 1.9E-07 48.8 3.8 26 76-101 7-32 (181)
249 3cf2_A TER ATPase, transitiona 95.9 0.0029 9.8E-08 64.2 2.5 39 77-115 510-550 (806)
250 1u8z_A RAS-related protein RAL 95.9 0.0056 1.9E-07 48.0 3.8 25 77-101 3-27 (168)
251 3tif_A Uncharacterized ABC tra 95.9 0.004 1.4E-07 53.7 3.1 27 76-102 29-55 (235)
252 1sxj_C Activator 1 40 kDa subu 95.9 0.0042 1.4E-07 56.0 3.4 23 81-103 49-71 (340)
253 1r2q_A RAS-related protein RAB 95.9 0.0043 1.5E-07 48.9 3.1 26 76-101 4-29 (170)
254 2bjv_A PSP operon transcriptio 95.9 0.0044 1.5E-07 53.7 3.4 25 79-103 30-54 (265)
255 2px0_A Flagellar biosynthesis 95.9 0.006 2.1E-07 54.6 4.4 27 76-102 103-129 (296)
256 3llu_A RAS-related GTP-binding 95.9 0.0035 1.2E-07 51.6 2.6 28 74-101 16-43 (196)
257 1cr0_A DNA primase/helicase; R 95.9 0.0051 1.7E-07 54.3 3.8 27 76-102 33-59 (296)
258 1oix_A RAS-related protein RAB 95.9 0.0051 1.7E-07 50.6 3.5 26 76-101 27-52 (191)
259 1sxj_B Activator 1 37 kDa subu 95.9 0.0048 1.6E-07 54.4 3.6 23 81-103 45-67 (323)
260 2wji_A Ferrous iron transport 95.9 0.0053 1.8E-07 49.0 3.5 23 78-100 3-25 (165)
261 2bov_A RAla, RAS-related prote 95.9 0.0057 2E-07 50.1 3.8 27 75-101 11-37 (206)
262 2dr3_A UPF0273 protein PH0284; 95.9 0.0053 1.8E-07 52.0 3.7 25 77-101 22-46 (247)
263 1z08_A RAS-related protein RAB 95.8 0.0053 1.8E-07 48.5 3.4 26 76-101 4-29 (170)
264 1iqp_A RFCS; clamp loader, ext 95.8 0.0056 1.9E-07 54.0 3.9 24 80-103 48-71 (327)
265 2gf9_A RAS-related protein RAB 95.8 0.0067 2.3E-07 49.3 4.1 26 76-101 20-45 (189)
266 3clv_A RAB5 protein, putative; 95.8 0.0077 2.6E-07 48.7 4.5 26 76-101 5-30 (208)
267 1ky3_A GTP-binding protein YPT 95.8 0.0056 1.9E-07 48.8 3.5 26 76-101 6-31 (182)
268 2z4s_A Chromosomal replication 95.8 0.0055 1.9E-07 57.8 4.0 35 78-112 130-171 (440)
269 1moz_A ARL1, ADP-ribosylation 95.8 0.0041 1.4E-07 50.0 2.7 25 76-100 16-40 (183)
270 1lw7_A Transcriptional regulat 95.8 0.0046 1.6E-07 56.6 3.3 28 78-105 170-197 (365)
271 2wsm_A Hydrogenase expression/ 95.8 0.0066 2.3E-07 50.7 4.0 27 76-102 28-54 (221)
272 3tw8_B RAS-related protein RAB 95.8 0.0052 1.8E-07 49.0 3.2 25 76-100 7-31 (181)
273 1c1y_A RAS-related protein RAP 95.8 0.0063 2.2E-07 47.8 3.7 25 77-101 2-26 (167)
274 2gj8_A MNME, tRNA modification 95.8 0.0056 1.9E-07 49.4 3.4 25 77-101 3-27 (172)
275 2lkc_A Translation initiation 95.8 0.0071 2.4E-07 48.2 4.0 25 76-100 6-30 (178)
276 1fzq_A ADP-ribosylation factor 95.8 0.0061 2.1E-07 49.5 3.6 27 75-101 13-39 (181)
277 1z0j_A RAB-22, RAS-related pro 95.8 0.0057 1.9E-07 48.2 3.3 26 76-101 4-29 (170)
278 3dm5_A SRP54, signal recogniti 95.8 0.01 3.5E-07 56.2 5.6 26 77-102 99-124 (443)
279 2nzj_A GTP-binding protein REM 95.8 0.006 2.1E-07 48.4 3.5 25 77-101 3-27 (175)
280 2ged_A SR-beta, signal recogni 95.8 0.0066 2.2E-07 49.3 3.8 26 76-101 46-71 (193)
281 2f9l_A RAB11B, member RAS onco 95.8 0.0062 2.1E-07 50.1 3.6 25 77-101 4-28 (199)
282 2cbz_A Multidrug resistance-as 95.8 0.005 1.7E-07 53.2 3.1 27 76-102 29-55 (237)
283 2pcj_A ABC transporter, lipopr 95.8 0.0046 1.6E-07 53.0 2.8 26 76-101 28-53 (224)
284 2b8t_A Thymidine kinase; deoxy 95.7 0.0074 2.5E-07 51.9 4.1 27 76-102 10-36 (223)
285 1jr3_A DNA polymerase III subu 95.7 0.0073 2.5E-07 54.5 4.3 26 79-104 39-64 (373)
286 3kkq_A RAS-related protein M-R 95.7 0.0075 2.5E-07 48.5 3.9 26 76-101 16-41 (183)
287 3bc1_A RAS-related protein RAB 95.7 0.0065 2.2E-07 48.9 3.5 26 76-101 9-34 (195)
288 2il1_A RAB12; G-protein, GDP, 95.7 0.006 2E-07 49.9 3.3 25 76-100 24-48 (192)
289 1r6b_X CLPA protein; AAA+, N-t 95.7 0.0055 1.9E-07 61.4 3.6 33 80-112 490-524 (758)
290 2a9k_A RAS-related protein RAL 95.7 0.0069 2.4E-07 48.5 3.6 26 76-101 16-41 (187)
291 2efe_B Small GTP-binding prote 95.7 0.0066 2.3E-07 48.5 3.4 26 76-101 10-35 (181)
292 1ypw_A Transitional endoplasmi 95.7 0.0033 1.1E-07 63.9 1.8 33 77-109 510-542 (806)
293 2qm8_A GTPase/ATPase; G protei 95.7 0.008 2.7E-07 54.7 4.2 27 76-102 53-79 (337)
294 1b0u_A Histidine permease; ABC 95.7 0.0057 1.9E-07 53.7 3.1 27 76-102 30-56 (262)
295 2h57_A ADP-ribosylation factor 95.7 0.0052 1.8E-07 50.0 2.7 27 76-102 19-45 (190)
296 1mv5_A LMRA, multidrug resista 95.7 0.0061 2.1E-07 52.8 3.3 27 76-102 26-52 (243)
297 4dsu_A GTPase KRAS, isoform 2B 95.6 0.0068 2.3E-07 48.7 3.4 25 77-101 3-27 (189)
298 1wms_A RAB-9, RAB9, RAS-relate 95.6 0.0063 2.1E-07 48.5 3.1 26 76-101 5-30 (177)
299 2erx_A GTP-binding protein DI- 95.6 0.0068 2.3E-07 47.8 3.2 24 77-100 2-25 (172)
300 1zd9_A ADP-ribosylation factor 95.6 0.0073 2.5E-07 49.2 3.5 26 76-101 20-45 (188)
301 2hf9_A Probable hydrogenase ni 95.6 0.0085 2.9E-07 50.2 4.0 26 77-102 37-62 (226)
302 3c5c_A RAS-like protein 12; GD 95.6 0.0075 2.6E-07 49.2 3.5 26 76-101 19-44 (187)
303 1z0f_A RAB14, member RAS oncog 95.6 0.008 2.7E-07 47.8 3.6 26 76-101 13-38 (179)
304 1nrj_B SR-beta, signal recogni 95.6 0.0082 2.8E-07 49.9 3.8 27 76-102 10-36 (218)
305 1u0j_A DNA replication protein 95.6 0.0092 3.2E-07 52.8 4.3 25 79-103 105-129 (267)
306 2g6b_A RAS-related protein RAB 95.6 0.0084 2.9E-07 47.9 3.7 26 76-101 8-33 (180)
307 1ek0_A Protein (GTP-binding pr 95.6 0.0072 2.5E-07 47.5 3.3 24 78-101 3-26 (170)
308 3b85_A Phosphate starvation-in 95.6 0.0063 2.2E-07 51.6 3.0 25 77-101 21-45 (208)
309 3gfo_A Cobalt import ATP-bindi 95.6 0.0059 2E-07 54.1 2.9 27 76-102 32-58 (275)
310 3pqc_A Probable GTP-binding pr 95.6 0.01 3.5E-07 47.9 4.2 26 76-101 21-46 (195)
311 1mh1_A RAC1; GTP-binding, GTPa 95.6 0.0083 2.9E-07 48.1 3.6 26 76-101 3-28 (186)
312 1g16_A RAS-related protein SEC 95.6 0.0079 2.7E-07 47.4 3.4 25 77-101 2-26 (170)
313 2olj_A Amino acid ABC transpor 95.6 0.0064 2.2E-07 53.5 3.1 27 76-102 48-74 (263)
314 2yhs_A FTSY, cell division pro 95.6 0.0085 2.9E-07 57.6 4.1 27 76-102 291-317 (503)
315 2ewv_A Twitching motility prot 95.6 0.009 3.1E-07 55.1 4.2 27 76-102 134-160 (372)
316 4g1u_C Hemin import ATP-bindin 95.6 0.0063 2.2E-07 53.6 3.0 27 76-102 35-61 (266)
317 3tkl_A RAS-related protein RAB 95.6 0.0088 3E-07 48.5 3.7 26 76-101 14-39 (196)
318 2d2e_A SUFC protein; ABC-ATPas 95.5 0.0077 2.6E-07 52.4 3.5 26 76-101 27-52 (250)
319 3kl4_A SRP54, signal recogniti 95.5 0.0082 2.8E-07 56.7 4.0 26 77-102 96-121 (433)
320 3oes_A GTPase rhebl1; small GT 95.5 0.0077 2.6E-07 49.6 3.4 26 76-101 22-47 (201)
321 2ff7_A Alpha-hemolysin translo 95.5 0.0064 2.2E-07 52.9 3.0 27 76-102 33-59 (247)
322 2ixe_A Antigen peptide transpo 95.5 0.0066 2.3E-07 53.6 3.1 27 76-102 43-69 (271)
323 3hr8_A Protein RECA; alpha and 95.5 0.008 2.7E-07 55.3 3.8 30 72-102 56-85 (356)
324 1nlf_A Regulatory protein REPA 95.5 0.0071 2.4E-07 53.0 3.3 25 77-101 29-53 (279)
325 2zu0_C Probable ATP-dependent 95.5 0.008 2.7E-07 52.9 3.6 26 76-101 44-69 (267)
326 2ghi_A Transport protein; mult 95.5 0.0069 2.3E-07 53.1 3.1 27 76-102 44-70 (260)
327 2onk_A Molybdate/tungstate ABC 95.5 0.0074 2.5E-07 52.3 3.3 24 79-102 25-48 (240)
328 2zej_A Dardarin, leucine-rich 95.5 0.0065 2.2E-07 49.4 2.8 22 79-100 3-24 (184)
329 1g6h_A High-affinity branched- 95.5 0.0067 2.3E-07 53.0 3.0 27 76-102 31-57 (257)
330 1ji0_A ABC transporter; ATP bi 95.5 0.0069 2.3E-07 52.4 3.0 27 76-102 30-56 (240)
331 2pze_A Cystic fibrosis transme 95.5 0.0069 2.4E-07 52.0 3.0 27 76-102 32-58 (229)
332 2www_A Methylmalonic aciduria 95.5 0.0098 3.4E-07 54.3 4.2 26 77-102 73-98 (349)
333 2zts_A Putative uncharacterize 95.5 0.0093 3.2E-07 50.5 3.7 28 72-100 25-52 (251)
334 2p5s_A RAS and EF-hand domain 95.5 0.0097 3.3E-07 48.9 3.7 26 76-101 26-51 (199)
335 2fg5_A RAB-22B, RAS-related pr 95.5 0.008 2.7E-07 49.1 3.2 26 76-101 21-46 (192)
336 3q72_A GTP-binding protein RAD 95.5 0.0082 2.8E-07 47.2 3.2 23 78-100 2-24 (166)
337 2atv_A RERG, RAS-like estrogen 95.5 0.01 3.5E-07 48.6 3.8 26 76-101 26-51 (196)
338 3cph_A RAS-related protein SEC 95.5 0.0098 3.3E-07 49.0 3.7 26 76-101 18-43 (213)
339 2qen_A Walker-type ATPase; unk 95.5 0.0081 2.8E-07 53.4 3.4 33 79-111 32-64 (350)
340 1yrb_A ATP(GTP)binding protein 95.5 0.011 3.9E-07 50.6 4.3 27 76-102 12-38 (262)
341 1vpl_A ABC transporter, ATP-bi 95.4 0.0074 2.5E-07 52.8 3.1 27 76-102 39-65 (256)
342 3t1o_A Gliding protein MGLA; G 95.4 0.0077 2.6E-07 48.7 3.0 28 76-103 12-39 (198)
343 3q85_A GTP-binding protein REM 95.4 0.0095 3.3E-07 47.0 3.5 22 79-100 3-24 (169)
344 1pui_A ENGB, probable GTP-bind 95.4 0.0051 1.8E-07 50.8 1.9 26 76-101 24-49 (210)
345 1svi_A GTP-binding protein YSX 95.4 0.0092 3.1E-07 48.5 3.4 26 76-101 21-46 (195)
346 1sgw_A Putative ABC transporte 95.4 0.0064 2.2E-07 51.9 2.5 27 76-102 33-59 (214)
347 3p32_A Probable GTPase RV1496/ 95.4 0.011 3.6E-07 54.1 4.2 27 76-102 77-103 (355)
348 1xx6_A Thymidine kinase; NESG, 95.4 0.012 4.2E-07 49.2 4.2 27 76-102 6-32 (191)
349 3tqf_A HPR(Ser) kinase; transf 95.4 0.0088 3E-07 49.7 3.2 34 76-110 14-47 (181)
350 2vhj_A Ntpase P4, P4; non- hyd 95.4 0.0098 3.4E-07 54.1 3.7 37 72-109 118-156 (331)
351 2ew1_A RAS-related protein RAB 95.4 0.0097 3.3E-07 49.5 3.5 26 76-101 24-49 (201)
352 2bme_A RAB4A, RAS-related prot 95.4 0.0095 3.2E-07 47.9 3.2 26 76-101 8-33 (186)
353 3nbx_X ATPase RAVA; AAA+ ATPas 95.4 0.0066 2.3E-07 58.4 2.6 26 78-103 41-66 (500)
354 3bwd_D RAC-like GTP-binding pr 95.4 0.011 3.9E-07 47.2 3.7 26 76-101 6-31 (182)
355 2yz2_A Putative ABC transporte 95.4 0.0084 2.9E-07 52.7 3.1 27 76-102 31-57 (266)
356 3dz8_A RAS-related protein RAB 95.3 0.0069 2.3E-07 49.4 2.4 26 76-101 21-46 (191)
357 3t5g_A GTP-binding protein RHE 95.3 0.0091 3.1E-07 47.9 3.1 26 76-101 4-29 (181)
358 1x3s_A RAS-related protein RAB 95.3 0.0094 3.2E-07 48.2 3.2 26 76-101 13-38 (195)
359 2qi9_C Vitamin B12 import ATP- 95.3 0.0083 2.8E-07 52.3 3.0 27 76-102 24-50 (249)
360 2q3h_A RAS homolog gene family 95.3 0.011 3.8E-07 48.4 3.6 28 74-101 16-43 (201)
361 2ihy_A ABC transporter, ATP-bi 95.3 0.0083 2.8E-07 53.2 3.0 27 76-102 45-71 (279)
362 2o52_A RAS-related protein RAB 95.3 0.0096 3.3E-07 49.1 3.2 25 76-100 23-47 (200)
363 1ksh_A ARF-like protein 2; sma 95.3 0.011 3.9E-07 47.6 3.5 26 76-101 16-41 (186)
364 1vg8_A RAS-related protein RAB 95.3 0.011 3.9E-07 48.4 3.5 26 76-101 6-31 (207)
365 3jvv_A Twitching mobility prot 95.3 0.013 4.5E-07 53.8 4.3 26 77-102 122-147 (356)
366 2b6h_A ADP-ribosylation factor 95.3 0.012 4E-07 48.3 3.6 25 76-100 27-51 (192)
367 1pzn_A RAD51, DNA repair and r 95.3 0.01 3.6E-07 54.2 3.6 27 76-102 129-155 (349)
368 3pxi_A Negative regulator of g 95.3 0.011 3.6E-07 59.4 3.9 38 76-113 518-561 (758)
369 1zu4_A FTSY; GTPase, signal re 95.2 0.013 4.6E-07 52.9 4.2 27 76-102 103-129 (320)
370 1zj6_A ADP-ribosylation factor 95.2 0.013 4.3E-07 47.5 3.7 25 76-100 14-38 (187)
371 2gza_A Type IV secretion syste 95.2 0.0082 2.8E-07 55.1 2.7 28 76-103 173-200 (361)
372 1m2o_B GTP-binding protein SAR 95.2 0.011 3.8E-07 48.4 3.3 26 76-101 21-46 (190)
373 2nq2_C Hypothetical ABC transp 95.2 0.0092 3.2E-07 52.1 2.9 27 76-102 29-55 (253)
374 2gco_A H9, RHO-related GTP-bin 95.2 0.016 5.5E-07 47.7 4.2 26 76-101 23-48 (201)
375 1r8s_A ADP-ribosylation factor 95.2 0.013 4.6E-07 45.9 3.6 23 79-101 1-23 (164)
376 2hup_A RAS-related protein RAB 95.2 0.012 4.1E-07 48.6 3.3 26 76-101 27-52 (201)
377 3reg_A RHO-like small GTPase; 95.2 0.012 4.3E-07 47.8 3.4 26 76-101 21-46 (194)
378 3fvq_A Fe(3+) IONS import ATP- 95.1 0.012 4E-07 54.3 3.5 27 76-102 28-54 (359)
379 1v5w_A DMC1, meiotic recombina 95.1 0.015 5.3E-07 52.8 4.2 26 76-101 120-145 (343)
380 3tvt_A Disks large 1 tumor sup 95.1 0.35 1.2E-05 43.0 13.0 88 158-254 189-281 (292)
381 2zr9_A Protein RECA, recombina 95.1 0.012 4.2E-07 53.8 3.6 28 73-101 57-84 (349)
382 2gf0_A GTP-binding protein DI- 95.1 0.016 5.4E-07 47.1 3.9 25 76-100 6-30 (199)
383 2npi_A Protein CLP1; CLP1-PCF1 95.1 0.01 3.5E-07 56.4 3.1 27 76-102 136-162 (460)
384 2yyz_A Sugar ABC transporter, 95.1 0.013 4.4E-07 54.0 3.6 27 76-102 27-53 (359)
385 3cbq_A GTP-binding protein REM 95.1 0.01 3.5E-07 48.9 2.7 25 76-100 21-45 (195)
386 2v3c_C SRP54, signal recogniti 95.1 0.011 3.9E-07 55.6 3.4 26 77-102 98-123 (432)
387 3sop_A Neuronal-specific septi 95.1 0.013 4.6E-07 51.5 3.6 24 79-102 3-26 (270)
388 3rlf_A Maltose/maltodextrin im 95.1 0.013 4.5E-07 54.4 3.6 27 76-102 27-53 (381)
389 3k53_A Ferrous iron transport 95.1 0.014 4.7E-07 51.0 3.6 25 77-101 2-26 (271)
390 2iwr_A Centaurin gamma 1; ANK 95.0 0.012 4.1E-07 47.0 2.9 25 77-101 6-30 (178)
391 1a5t_A Delta prime, HOLB; zinc 95.0 0.018 6.2E-07 51.9 4.4 29 78-106 24-52 (334)
392 1ojl_A Transcriptional regulat 95.0 0.012 4.1E-07 52.6 3.2 25 78-102 25-49 (304)
393 2it1_A 362AA long hypothetical 95.0 0.014 4.7E-07 53.9 3.6 27 76-102 27-53 (362)
394 1zbd_A Rabphilin-3A; G protein 95.0 0.016 5.6E-07 47.4 3.7 26 76-101 6-31 (203)
395 2p67_A LAO/AO transport system 95.0 0.017 5.7E-07 52.5 4.1 27 76-102 54-80 (341)
396 2fh5_B SR-beta, signal recogni 95.0 0.015 5.1E-07 48.2 3.5 26 76-101 5-30 (214)
397 3lxx_A GTPase IMAP family memb 95.0 0.014 4.8E-07 49.7 3.4 26 76-101 27-52 (239)
398 2qu8_A Putative nucleolar GTP- 95.0 0.019 6.5E-07 48.4 4.1 26 76-101 27-52 (228)
399 2cxx_A Probable GTP-binding pr 95.0 0.013 4.5E-07 47.1 3.0 23 79-101 2-24 (190)
400 1gwn_A RHO-related GTP-binding 95.0 0.015 5.1E-07 48.4 3.4 26 76-101 26-51 (205)
401 2j37_W Signal recognition part 95.0 0.017 5.7E-07 55.6 4.1 27 76-102 99-125 (504)
402 1p9r_A General secretion pathw 95.0 0.019 6.5E-07 53.9 4.4 27 77-103 166-192 (418)
403 1v43_A Sugar-binding transport 95.0 0.015 5E-07 53.9 3.6 27 76-102 35-61 (372)
404 1z47_A CYSA, putative ABC-tran 95.0 0.014 4.9E-07 53.6 3.5 27 76-102 39-65 (355)
405 2j1l_A RHO-related GTP-binding 95.0 0.015 5E-07 48.6 3.3 25 76-100 32-56 (214)
406 3cpj_B GTP-binding protein YPT 94.9 0.016 5.3E-07 48.7 3.5 26 76-101 11-36 (223)
407 1qvr_A CLPB protein; coiled co 94.9 0.0093 3.2E-07 60.8 2.4 25 78-102 191-215 (854)
408 2aka_B Dynamin-1; fusion prote 94.9 0.021 7E-07 50.0 4.3 26 76-101 24-49 (299)
409 2bcg_Y Protein YP2, GTP-bindin 94.9 0.017 5.8E-07 47.5 3.6 26 76-101 6-31 (206)
410 3lda_A DNA repair protein RAD5 94.9 0.013 4.6E-07 54.6 3.2 25 76-100 176-200 (400)
411 2r8r_A Sensor protein; KDPD, P 94.9 0.022 7.5E-07 49.2 4.3 26 77-102 5-30 (228)
412 2bbs_A Cystic fibrosis transme 94.9 0.013 4.4E-07 52.3 2.9 27 76-102 62-88 (290)
413 2pjz_A Hypothetical protein ST 94.9 0.013 4.6E-07 51.4 3.0 26 76-102 29-54 (263)
414 2fv8_A H6, RHO-related GTP-bin 94.9 0.015 5.2E-07 48.0 3.2 26 76-101 23-48 (207)
415 3a1s_A Iron(II) transport prot 94.9 0.015 5E-07 50.7 3.2 26 75-100 2-27 (258)
416 3tui_C Methionine import ATP-b 94.9 0.016 5.5E-07 53.5 3.6 27 76-102 52-78 (366)
417 1f6b_A SAR1; gtpases, N-termin 94.9 0.015 5.3E-07 47.9 3.2 25 76-100 23-47 (198)
418 4gzl_A RAS-related C3 botulinu 94.8 0.018 6.1E-07 47.6 3.6 26 76-101 28-53 (204)
419 2xkx_A Disks large homolog 4; 94.8 0.27 9.1E-06 49.2 12.7 159 76-251 529-709 (721)
420 1zcb_A G alpha I/13; GTP-bindi 94.8 0.017 5.7E-07 53.2 3.6 27 76-102 31-57 (362)
421 2f7s_A C25KG, RAS-related prot 94.8 0.018 6E-07 47.8 3.5 25 76-100 23-47 (217)
422 1g29_1 MALK, maltose transport 94.8 0.016 5.6E-07 53.5 3.5 27 76-102 27-53 (372)
423 2z43_A DNA repair and recombin 94.8 0.017 5.7E-07 52.0 3.5 29 73-102 103-131 (324)
424 3q3j_B RHO-related GTP-binding 94.8 0.02 6.7E-07 47.9 3.7 26 76-101 25-50 (214)
425 2xtp_A GTPase IMAP family memb 94.8 0.018 6.3E-07 49.5 3.5 26 76-101 20-45 (260)
426 3nh6_A ATP-binding cassette SU 94.8 0.0096 3.3E-07 53.6 1.8 27 76-102 78-104 (306)
427 1u94_A RECA protein, recombina 94.7 0.019 6.5E-07 52.7 3.7 36 73-109 59-99 (356)
428 1qvr_A CLPB protein; coiled co 94.7 0.013 4.4E-07 59.7 2.8 27 76-102 585-612 (854)
429 3gj0_A GTP-binding nuclear pro 94.7 0.017 6E-07 48.1 3.2 28 75-102 12-40 (221)
430 2i1q_A DNA repair and recombin 94.7 0.017 6E-07 51.6 3.4 28 73-101 94-121 (322)
431 3d31_A Sulfate/molybdate ABC t 94.7 0.012 4.1E-07 54.0 2.3 27 76-102 24-50 (348)
432 4dkx_A RAS-related protein RAB 94.7 0.021 7.3E-07 48.4 3.7 27 74-100 9-35 (216)
433 3lxw_A GTPase IMAP family memb 94.7 0.019 6.6E-07 49.5 3.4 26 76-101 19-44 (247)
434 2x77_A ADP-ribosylation factor 94.7 0.015 5.1E-07 47.1 2.6 25 76-100 20-44 (189)
435 3gd7_A Fusion complex of cysti 94.6 0.019 6.4E-07 53.5 3.5 26 76-101 45-70 (390)
436 3k1j_A LON protease, ATP-depen 94.6 0.016 5.6E-07 56.6 3.2 27 78-104 60-86 (604)
437 2pt7_A CAG-ALFA; ATPase, prote 94.6 0.012 4.3E-07 53.3 2.2 27 77-103 170-196 (330)
438 2orv_A Thymidine kinase; TP4A 94.6 0.026 9E-07 48.8 4.1 29 74-102 15-43 (234)
439 1ls1_A Signal recognition part 94.6 0.026 8.8E-07 50.3 4.1 26 77-102 97-122 (295)
440 2atx_A Small GTP binding prote 94.6 0.02 6.7E-07 46.6 3.1 26 76-101 16-41 (194)
441 2j0v_A RAC-like GTP-binding pr 94.6 0.025 8.4E-07 46.7 3.7 26 76-101 7-32 (212)
442 2fu5_C RAS-related protein RAB 94.5 0.013 4.3E-07 47.1 1.8 25 76-100 6-30 (183)
443 1r6b_X CLPA protein; AAA+, N-t 94.5 0.023 7.9E-07 56.9 4.1 26 77-102 206-231 (758)
444 1j8m_F SRP54, signal recogniti 94.5 0.023 7.8E-07 50.8 3.6 25 78-102 98-122 (297)
445 2fna_A Conserved hypothetical 94.5 0.025 8.7E-07 50.1 3.9 26 79-104 31-56 (357)
446 1w5s_A Origin recognition comp 94.4 0.022 7.4E-07 52.0 3.3 26 77-102 49-76 (412)
447 2cjw_A GTP-binding protein GEM 94.4 0.028 9.6E-07 46.1 3.7 25 77-101 5-29 (192)
448 2rcn_A Probable GTPase ENGC; Y 94.4 0.023 7.8E-07 52.3 3.4 26 77-102 214-239 (358)
449 1oxx_K GLCV, glucose, ABC tran 94.4 0.012 4.2E-07 53.9 1.6 27 76-102 29-55 (353)
450 2xxa_A Signal recognition part 94.4 0.032 1.1E-06 52.6 4.4 27 76-102 98-124 (433)
451 1nij_A Hypothetical protein YJ 94.3 0.023 7.8E-07 51.1 3.2 25 77-101 3-27 (318)
452 3io5_A Recombination and repai 94.3 0.029 1E-06 51.0 3.8 28 72-101 24-51 (333)
453 1jwy_B Dynamin A GTPase domain 94.3 0.037 1.3E-06 48.9 4.4 26 76-101 22-47 (315)
454 3upu_A ATP-dependent DNA helic 94.3 0.027 9.3E-07 53.1 3.7 23 80-102 47-69 (459)
455 2yv5_A YJEQ protein; hydrolase 94.2 0.027 9.3E-07 50.3 3.5 25 77-102 164-188 (302)
456 3kta_A Chromosome segregation 94.2 0.033 1.1E-06 45.1 3.6 24 80-103 28-51 (182)
457 2qag_B Septin-6, protein NEDD5 94.1 0.026 9E-07 53.1 3.3 26 76-101 38-65 (427)
458 2oap_1 GSPE-2, type II secreti 94.1 0.021 7.2E-07 55.0 2.7 26 77-102 259-284 (511)
459 1ega_A Protein (GTP-binding pr 94.1 0.028 9.5E-07 50.1 3.3 26 76-101 6-31 (301)
460 3ozx_A RNAse L inhibitor; ATP 94.1 0.027 9.1E-07 54.6 3.4 28 75-102 22-49 (538)
461 3bh0_A DNAB-like replicative h 94.1 0.035 1.2E-06 49.7 4.0 27 76-102 66-92 (315)
462 2j9r_A Thymidine kinase; TK1, 94.1 0.043 1.5E-06 46.9 4.3 27 76-102 26-52 (214)
463 1u0l_A Probable GTPase ENGC; p 94.1 0.024 8.3E-07 50.5 2.8 25 77-101 168-192 (301)
464 1tq4_A IIGP1, interferon-induc 94.1 0.029 1E-06 52.6 3.5 25 77-101 68-92 (413)
465 3b1v_A Ferrous iron uptake tra 94.0 0.034 1.2E-06 48.9 3.6 25 77-101 2-26 (272)
466 2g3y_A GTP-binding protein GEM 94.0 0.035 1.2E-06 46.8 3.5 25 76-100 35-59 (211)
467 4dhe_A Probable GTP-binding pr 93.9 0.018 6E-07 47.9 1.5 26 76-101 27-52 (223)
468 3f9v_A Minichromosome maintena 93.9 0.012 4.2E-07 57.7 0.5 26 79-104 328-353 (595)
469 3iby_A Ferrous iron transport 93.9 0.031 1.1E-06 48.6 3.1 23 79-101 2-24 (256)
470 3iev_A GTP-binding protein ERA 93.9 0.033 1.1E-06 49.7 3.4 27 75-101 7-33 (308)
471 3e1s_A Exodeoxyribonuclease V, 93.9 0.036 1.2E-06 54.0 3.9 25 78-102 204-228 (574)
472 3i8s_A Ferrous iron transport 93.8 0.038 1.3E-06 48.4 3.6 25 77-101 2-26 (274)
473 2r6a_A DNAB helicase, replicat 93.8 0.041 1.4E-06 51.8 4.0 26 76-101 201-226 (454)
474 1xp8_A RECA protein, recombina 93.8 0.037 1.3E-06 51.0 3.6 37 73-110 70-111 (366)
475 2yc2_C IFT27, small RAB-relate 93.8 0.012 4.1E-07 48.1 0.1 26 76-101 18-43 (208)
476 2ffh_A Protein (FFH); SRP54, s 93.8 0.045 1.5E-06 51.5 4.1 26 77-102 97-122 (425)
477 3o47_A ADP-ribosylation factor 93.8 0.014 4.8E-07 52.7 0.6 25 76-100 163-187 (329)
478 2obl_A ESCN; ATPase, hydrolase 93.6 0.044 1.5E-06 50.1 3.7 28 76-103 69-96 (347)
479 1tf7_A KAIC; homohexamer, hexa 93.6 0.036 1.2E-06 53.2 3.3 23 76-98 37-59 (525)
480 1ko7_A HPR kinase/phosphatase; 93.6 0.039 1.3E-06 49.8 3.3 33 77-110 143-175 (314)
481 4djt_A GTP-binding nuclear pro 93.6 0.018 6E-07 47.9 0.9 25 76-100 9-33 (218)
482 1ni3_A YCHF GTPase, YCHF GTP-b 93.5 0.046 1.6E-06 50.8 3.7 25 76-100 18-42 (392)
483 2dpy_A FLII, flagellum-specifi 93.5 0.046 1.6E-06 51.5 3.7 28 76-103 155-182 (438)
484 3th5_A RAS-related C3 botulinu 92.6 0.014 4.6E-07 48.1 0.0 25 76-100 28-52 (204)
485 1yqt_A RNAse L inhibitor; ATP- 93.5 0.043 1.5E-06 53.0 3.6 27 76-102 45-71 (538)
486 3b5x_A Lipid A export ATP-bind 93.5 0.042 1.4E-06 53.5 3.5 27 76-102 367-393 (582)
487 3c5h_A Glucocorticoid receptor 93.4 0.069 2.3E-06 46.1 4.5 26 75-100 16-50 (255)
488 2qnr_A Septin-2, protein NEDD5 93.4 0.039 1.3E-06 49.2 2.9 24 77-100 17-40 (301)
489 3b60_A Lipid A export ATP-bind 93.4 0.035 1.2E-06 54.1 2.7 27 76-102 367-393 (582)
490 3j16_B RLI1P; ribosome recycli 93.3 0.048 1.7E-06 53.6 3.7 28 75-102 100-127 (608)
491 1tf7_A KAIC; homohexamer, hexa 93.3 0.046 1.6E-06 52.5 3.4 27 76-102 279-305 (525)
492 1mky_A Probable GTP-binding pr 93.2 0.056 1.9E-06 50.6 3.8 25 77-101 179-203 (439)
493 3r7w_A Gtpase1, GTP-binding pr 93.1 0.057 2E-06 48.1 3.5 25 77-101 2-26 (307)
494 2yl4_A ATP-binding cassette SU 93.0 0.041 1.4E-06 53.7 2.6 27 76-102 368-394 (595)
495 1t9h_A YLOQ, probable GTPase E 93.0 0.02 6.8E-07 51.6 0.3 24 77-100 172-195 (307)
496 2q6t_A DNAB replication FORK h 92.9 0.068 2.3E-06 50.2 3.8 26 76-101 198-223 (444)
497 3qf4_B Uncharacterized ABC tra 92.9 0.046 1.6E-06 53.4 2.8 27 76-102 379-405 (598)
498 2e87_A Hypothetical protein PH 92.8 0.066 2.2E-06 48.7 3.5 26 76-101 165-190 (357)
499 3l0i_B RAS-related protein RAB 92.8 0.017 5.7E-07 47.4 -0.4 24 76-99 31-54 (199)
500 2gno_A DNA polymerase III, gam 92.7 0.063 2.2E-06 48.0 3.3 25 78-102 18-42 (305)
No 1
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=100.00 E-value=2.2e-38 Score=276.27 Aligned_cols=176 Identities=18% Similarity=0.331 Sum_probs=163.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCc
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~ 155 (277)
+++++|+|+|||||||+|+|+.|+++||++|||+||++|+++..++++|+.+++++.+|+++|++++.+++.+++.+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~~~- 105 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKLV- 105 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHT-
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcc-
Confidence 5778899999999999999999999999999999999999999999999999999999999999999999999997643
Q ss_pred cCccEEEEcCccCCHHHHHHHHhh-cCcCEEEEecCCHHHHHHhh-------------cchHHHHHHHHHHhchhHHHHH
Q 023790 156 RGEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNR-------------GGSLKEKLEAYAELGKPLEDYY 221 (277)
Q Consensus 156 ~~~~g~IldGfPrt~~qae~l~~~-~~~d~vI~L~~~~e~l~~Rl-------------~~~~~~rl~~y~~~~~~l~~~y 221 (277)
...+|||+|||||+..|++.|++. ..+++||+|+||++++.+|+ ++.+++|++.|++++.|+.+||
T Consensus 106 ~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~Y 185 (217)
T 3umf_A 106 DKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTFNELTKPVIEHY 185 (217)
T ss_dssp TTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred ccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 246799999999999999999865 57899999999999999998 2357899999999999999999
Q ss_pred HhcCcEEEEeCCCCHHHHHHHHHHHHHHccc
Q 023790 222 QKQKKLLEFQVGSAPLETWQGLLTALHLQHI 252 (277)
Q Consensus 222 ~~~~~li~Ida~~s~eev~~~I~~~L~~~~~ 252 (277)
++.++++.||+++++++||++|.++|++.++
T Consensus 186 ~~~~~l~~Idg~~~~eeV~~~I~~~l~k~G~ 216 (217)
T 3umf_A 186 KQQNKVITIDASGTVDAIFDKVNHELQKFGV 216 (217)
T ss_dssp HTTTCEEEEETTSCHHHHHHHHHHHHHTTTC
T ss_pred HhcCCEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999988764
No 2
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=100.00 E-value=7.1e-38 Score=271.07 Aligned_cols=167 Identities=29% Similarity=0.468 Sum_probs=154.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCccCc
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (277)
|+|+|+|||||||+|+|+.|+++||++|||+||++|+++..++++|+.+++++.+|+++|++++.+++.+++.+ .
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~-----~ 75 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK-----H 75 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS-----S
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc-----C
Confidence 68999999999999999999999999999999999999999999999999999999999999999999998865 3
Q ss_pred cEEEEcCccCCHHHHHHHHhh-----cCcCEEEEecCCHHHHHHhhc---------------------------------
Q 023790 159 IGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNRG--------------------------------- 200 (277)
Q Consensus 159 ~g~IldGfPrt~~qae~l~~~-----~~~d~vI~L~~~~e~l~~Rl~--------------------------------- 200 (277)
.|||+|||||+..|++.|+.. ..+++||+|+||++++++|+.
T Consensus 76 ~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~~ 155 (206)
T 3sr0_A 76 GNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKP 155 (206)
T ss_dssp SCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCTTCCCBCCGGGSH
T ss_pred CceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCCCceecccCCCCH
Confidence 589999999999999999754 468999999999999999982
Q ss_pred chHHHHHHHHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 201 GSLKEKLEAYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 201 ~~~~~rl~~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
+.+++|++.|++++.|+.+||++.++++.||+++++++|+++|+++|...
T Consensus 156 e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~e~ 205 (206)
T 3sr0_A 156 EVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIGDG 205 (206)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHccC
Confidence 24789999999999999999999999999999999999999999998753
No 3
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=5.6e-34 Score=250.00 Aligned_cols=171 Identities=23% Similarity=0.398 Sum_probs=140.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCcc
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (277)
..|++-|+|+|||||||+|+.|+++||++||++|+++|+++..++++|+.+++++.+|+++|++++.++|.+++.+..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~-- 84 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEAD-- 84 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGG--
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcc--
Confidence 568899999999999999999999999999999999999998999999999999999999999999999999998753
Q ss_pred CccEEEEcCccCCHHHHHHHHhh-cCcCEEEEecCCHHHHHHhh------------------------------------
Q 023790 157 GEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNR------------------------------------ 199 (277)
Q Consensus 157 ~~~g~IldGfPrt~~qae~l~~~-~~~d~vI~L~~~~e~l~~Rl------------------------------------ 199 (277)
..+|||||||||+..|++.|++. ..+|.||+|+||++++++|+
T Consensus 85 ~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~~R 164 (230)
T 3gmt_A 85 CANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQR 164 (230)
T ss_dssp GTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCC
T ss_pred cCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCccccC
Confidence 35799999999999999999865 47899999999999999998
Q ss_pred ----cchHHHHHHHHHHhchhHHHHHHhc-----------CcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 200 ----GGSLKEKLEAYAELGKPLEDYYQKQ-----------KKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 200 ----~~~~~~rl~~y~~~~~~l~~~y~~~-----------~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
++.+++|++.|++++.|+.+||++. ++++.||+++++++|+++|.++|..
T Consensus 165 ~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l~~ 229 (230)
T 3gmt_A 165 DDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQVS 229 (230)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC-----------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence 1246899999999999999999873 7899999999999999999998753
No 4
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.97 E-value=1.8e-29 Score=222.80 Aligned_cols=171 Identities=25% Similarity=0.443 Sum_probs=157.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCc
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~ 155 (277)
.++++|+|+|+|||||||+|+.|++++|++|+++++++|+....+++.|+.+++++.+|..+|++++..++..++...
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~-- 104 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTP-- 104 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSG--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcc--
Confidence 478899999999999999999999999999999999999999999999999999999999999999999999988865
Q ss_pred cCccEEEEcCccCCHHHHHHHHhh-----cCcCEEEEecCCHHHHHHhhc------------------------------
Q 023790 156 RGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNRG------------------------------ 200 (277)
Q Consensus 156 ~~~~g~IldGfPrt~~qae~l~~~-----~~~d~vI~L~~~~e~l~~Rl~------------------------------ 200 (277)
..+.+||+||||++..|++.|++. ..+|.||+|++|++++++|+.
T Consensus 105 ~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~ 184 (243)
T 3tlx_A 105 QCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNE 184 (243)
T ss_dssp GGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCC
T ss_pred cccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccccCCCcccCccccccc
Confidence 346899999999999999888754 468999999999999999973
Q ss_pred ----------chHHHHHHHHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHH
Q 023790 201 ----------GSLKEKLEAYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALH 248 (277)
Q Consensus 201 ----------~~~~~rl~~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~ 248 (277)
+.+++|++.|+++..++.++|.+.+.++.||++.++++|+++|.++|.
T Consensus 185 ~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 242 (243)
T 3tlx_A 185 PLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID 242 (243)
T ss_dssp BCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence 246799999999999999999998999999999999999999999875
No 5
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.96 E-value=9.4e-29 Score=212.96 Aligned_cols=169 Identities=25% Similarity=0.474 Sum_probs=154.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCccCc
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (277)
|+|+|+|+|||||||+|+.|++++|++++++|+++|+....+++.++.+++++..|..++++++..++..++... ..+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~--~~~ 78 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKD--DCE 78 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSG--GGT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc--ccc
Confidence 579999999999999999999999999999999999999899999999999999999999999999999988865 246
Q ss_pred cEEEEcCccCCHHHHHHHHhhc-----CcCEEEEecCCHHHHHHhhcc--------------------------------
Q 023790 159 IGFILDGLPRSRIQAEILDQLA-----EIDLVVNFKCADNFIVTNRGG-------------------------------- 201 (277)
Q Consensus 159 ~g~IldGfPrt~~qae~l~~~~-----~~d~vI~L~~~~e~l~~Rl~~-------------------------------- 201 (277)
.+||+||||++..|++.+.+.. .+|.+|+|++|++++.+|+..
T Consensus 79 ~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~ 158 (216)
T 3dl0_A 79 RGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELY 158 (216)
T ss_dssp TCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEE
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCcccccccccc
Confidence 8899999999999988887542 589999999999999999833
Q ss_pred --------hHHHHHHHHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 202 --------SLKEKLEAYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 202 --------~~~~rl~~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
.+++|++.|++...++.++|.+.+.++.||+++++++++++|.++|+.
T Consensus 159 ~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (216)
T 3dl0_A 159 QRADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGG 214 (216)
T ss_dssp CCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHGG
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 368999999999999999999888899999999999999999999874
No 6
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.96 E-value=2.3e-28 Score=210.35 Aligned_cols=169 Identities=25% Similarity=0.455 Sum_probs=153.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCccCc
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (277)
|+|+|+|+|||||||+|+.|++++|++++++|+++++....+++.++.+++++..|..++++++..++...+... ..+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~--~~~ 78 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKD--DCQ 78 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSG--GGT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc--cCC
Confidence 579999999999999999999999999999999999999889999999999999999999999999999988865 236
Q ss_pred cEEEEcCccCCHHHHHHHHhhc-----CcCEEEEecCCHHHHHHhhcc--------------------------------
Q 023790 159 IGFILDGLPRSRIQAEILDQLA-----EIDLVVNFKCADNFIVTNRGG-------------------------------- 201 (277)
Q Consensus 159 ~g~IldGfPrt~~qae~l~~~~-----~~d~vI~L~~~~e~l~~Rl~~-------------------------------- 201 (277)
.+||+||+|++..|++.+.... .+|.+|+|++|++++.+|+..
T Consensus 79 ~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~ 158 (216)
T 3fb4_A 79 KGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELY 158 (216)
T ss_dssp TCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEE
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCccc
Confidence 7899999999999988887542 489999999999999999843
Q ss_pred --------hHHHHHHHHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 202 --------SLKEKLEAYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 202 --------~~~~rl~~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
.+++|++.|.+...++.++|.+.+.+++||+++++++++++|.++|+.
T Consensus 159 ~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (216)
T 3fb4_A 159 QRIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG 214 (216)
T ss_dssp CCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHh
Confidence 368899999999999999999888899999999999999999999874
No 7
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.96 E-value=4.4e-28 Score=209.72 Aligned_cols=171 Identities=27% Similarity=0.518 Sum_probs=150.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHH-cCC
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLE-DGY 154 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~-~~~ 154 (277)
+++++|+|+|+|||||||+|+.|++++|+.++++|+++++....+++.|+.+++++..|+.++++.+..++.+++. ..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~- 80 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNP- 80 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCG-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhcc-
Confidence 5778999999999999999999999999999999999999888889999999999999999999999999988887 32
Q ss_pred ccCccEEEEcCccCCHHHHHHHHhh-----cCcCEEEEecCCHHHHHHhhcc----------------------------
Q 023790 155 YRGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNRGG---------------------------- 201 (277)
Q Consensus 155 ~~~~~g~IldGfPrt~~qae~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~---------------------------- 201 (277)
..+.+||+||||++..|++.|+.. ..+|++|+|++|++++++|+..
T Consensus 81 -~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~ 159 (220)
T 1aky_A 81 -ACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTG 159 (220)
T ss_dssp -GGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTC
T ss_pred -ccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCcccccccccc
Confidence 235789999999999888776543 3688999999999999999721
Q ss_pred ------------hHHHHHHHHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHH
Q 023790 202 ------------SLKEKLEAYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALH 248 (277)
Q Consensus 202 ------------~~~~rl~~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~ 248 (277)
.+++|++.|.+...++.++|.+.+.++.||+++++++|+++|.+.|.
T Consensus 160 ~~l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 218 (220)
T 1aky_A 160 EALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG 218 (220)
T ss_dssp CBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHT
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 14578999999999999999877789999999999999999999875
No 8
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.96 E-value=2.9e-28 Score=210.93 Aligned_cols=170 Identities=23% Similarity=0.436 Sum_probs=148.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCc
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~ 155 (277)
.++++|+|+|+|||||||+|+.|++++|++++++|+++++..+.++++|+.+++++.+|+.++++++.+++..++...
T Consensus 3 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~-- 80 (217)
T 3be4_A 3 SKKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLG-- 80 (217)
T ss_dssp GGCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTT--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc--
Confidence 467899999999999999999999999999999999999988888889999999999999999999999998888764
Q ss_pred cCccEEEEcCccCCHHHHHHHHhh-----cCcCEEEEecCCHHHHHHhhcc-----------------------------
Q 023790 156 RGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNRGG----------------------------- 201 (277)
Q Consensus 156 ~~~~g~IldGfPrt~~qae~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~----------------------------- 201 (277)
..+.+||+||||++..|++.+++. ..||++|+|++|++++.+|+..
T Consensus 81 ~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~ 160 (217)
T 3be4_A 81 VCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGE 160 (217)
T ss_dssp TTTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCC
T ss_pred ccCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCcccccccccc
Confidence 346789999999999888887642 3689999999999999999732
Q ss_pred -----------hHHHHHHHHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHH
Q 023790 202 -----------SLKEKLEAYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTAL 247 (277)
Q Consensus 202 -----------~~~~rl~~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L 247 (277)
.+++|+..|+++..++.++|.+.+.++.||+++++++|+++|.+.|
T Consensus 161 ~l~~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 217 (217)
T 3be4_A 161 PLVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKIL 217 (217)
T ss_dssp BCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHC
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHhhC
Confidence 1357899999999999999987778999999999999999998753
No 9
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.96 E-value=4.3e-28 Score=212.07 Aligned_cols=173 Identities=31% Similarity=0.522 Sum_probs=153.1
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCC
Q 023790 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY 154 (277)
Q Consensus 75 ~~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~ 154 (277)
+.++++|+|+|+|||||||+|+.|++++|+.++++++++++.+..++++++.+++++..|..++++++.+++..++....
T Consensus 13 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~ 92 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPP 92 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhccc
Confidence 46778999999999999999999999999999999999999887788999999999999999999999999998887652
Q ss_pred ccCccEEEEcCccCCHHHHHHHHhh-----cCcCEEEEecCCHHHHHHhhcc----------------------------
Q 023790 155 YRGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNRGG---------------------------- 201 (277)
Q Consensus 155 ~~~~~g~IldGfPrt~~qae~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~---------------------------- 201 (277)
.+.|||+||||++..|++.|+++ ..++++|+|+++++++.+|+..
T Consensus 93 --~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~ 170 (233)
T 1ak2_A 93 --CKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITG 170 (233)
T ss_dssp --GTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTC
T ss_pred --ccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCcccccccccc
Confidence 35789999999999998877654 2589999999999999999721
Q ss_pred ------------hHHHHHHHHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 202 ------------SLKEKLEAYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 202 ------------~~~~rl~~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
.+++|++.|.+...++.++|.+.+.++.||+++++++|+++|.+.|..
T Consensus 171 ~~l~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~~ 230 (233)
T 1ak2_A 171 EPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSK 230 (233)
T ss_dssp CBCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 246788999999999999998777899999999999999999999865
No 10
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.95 E-value=3.3e-27 Score=203.51 Aligned_cols=167 Identities=26% Similarity=0.488 Sum_probs=148.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCccCc
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (277)
|+|+|+|+|||||||+|+.|++++|+.++++|+++++.+..+++.|+.+++++..|..+|++++.+++..++... ...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~--~~~ 78 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQE--DCR 78 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSG--GGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc--ccC
Confidence 579999999999999999999999999999999999987778888999999999999999999999999888764 235
Q ss_pred cEEEEcCccCCHHHHHHHHhh-cCcCEEEEecCCHHHHHHhhc-------------------------------------
Q 023790 159 IGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNRG------------------------------------- 200 (277)
Q Consensus 159 ~g~IldGfPrt~~qae~l~~~-~~~d~vI~L~~~~e~l~~Rl~------------------------------------- 200 (277)
.+||+||||++..|++.|... ..+|++|+|++|++++++|+.
T Consensus 79 ~~~i~dg~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~~r~d 158 (214)
T 1e4v_A 79 NGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKD 158 (214)
T ss_dssp GCEEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCTT
T ss_pred CCEEEeCCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCcccccCCCCCccccccccccccccCCC
Confidence 789999999999998887654 468999999999999999972
Q ss_pred ---chHHHHHHHHHHhchhHHHHHHhc-----CcEEEEeCCCCHHHHHHHHHHHH
Q 023790 201 ---GSLKEKLEAYAELGKPLEDYYQKQ-----KKLLEFQVGSAPLETWQGLLTAL 247 (277)
Q Consensus 201 ---~~~~~rl~~y~~~~~~l~~~y~~~-----~~li~Ida~~s~eev~~~I~~~L 247 (277)
+.+++|++.|.+...++.++|.+. +.++.||+++++++|+++|.+.|
T Consensus 159 d~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l 213 (214)
T 1e4v_A 159 DQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL 213 (214)
T ss_dssp CSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 135789999999999999999764 57999999999999999999876
No 11
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.95 E-value=1.2e-26 Score=201.77 Aligned_cols=166 Identities=19% Similarity=0.324 Sum_probs=147.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCccCc
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (277)
|+|+|+|+|||||||+|+.|++++|++++++|+++++.+..+++.|+.+++++.+|+.++++++.+++...+... . +
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~--~-g 77 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESK--G-K 77 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHH--C-T
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhcc--c-C
Confidence 579999999999999999999999999999999999988888899999999999999999999999998888763 1 5
Q ss_pred cEEEEcCccCCHHHHHHHHhh-----cCcCEEEEecCCHHHHHHhhc---------------------------------
Q 023790 159 IGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNRG--------------------------------- 200 (277)
Q Consensus 159 ~g~IldGfPrt~~qae~l~~~-----~~~d~vI~L~~~~e~l~~Rl~--------------------------------- 200 (277)
.+||+||||++..|++.|.+. ..||++|+|++|++++.+|+.
T Consensus 78 ~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~~~~ 157 (223)
T 2xb4_A 78 DGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGA 157 (223)
T ss_dssp TCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCTTTCCB
T ss_pred CeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccCCccccccCCCccccccccccccc
Confidence 789999999999888888653 368999999999999999972
Q ss_pred ---------c-hHHHHHHHHHHhchhHHH---HHHh-----cCcEEEEeCCCCHHHHHHHHHHHH
Q 023790 201 ---------G-SLKEKLEAYAELGKPLED---YYQK-----QKKLLEFQVGSAPLETWQGLLTAL 247 (277)
Q Consensus 201 ---------~-~~~~rl~~y~~~~~~l~~---~y~~-----~~~li~Ida~~s~eev~~~I~~~L 247 (277)
+ .+++|++.|++.+.|+.+ +|.+ .+.++.||+++++++|+++|.+.|
T Consensus 158 l~~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~~~i~~~l 222 (223)
T 2xb4_A 158 LSARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQL 222 (223)
T ss_dssp EECCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 1 446788889999999999 9987 567899999999999999999876
No 12
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.94 E-value=5.4e-26 Score=197.64 Aligned_cols=171 Identities=23% Similarity=0.410 Sum_probs=149.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCc
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~ 155 (277)
.++++|+|+|+|||||||+|+.|++++|+.++++|+++++....++++|+.+++++..|..++++....++.+++...
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~-- 82 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNL-- 82 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTC--
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc--
Confidence 367899999999999999999999999999999999999988778889999999999999999988888887777752
Q ss_pred cCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcc----------------------------------
Q 023790 156 RGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG---------------------------------- 201 (277)
Q Consensus 156 ~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~---------------------------------- 201 (277)
.+.+||+||+|++..|++.++....++.+|+|++|++++.+|+..
T Consensus 83 -~~~~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~l~~r 161 (227)
T 1zd8_A 83 -TQYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQR 161 (227)
T ss_dssp -TTSCEEEESCCCSHHHHHHHHTTSCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCC
T ss_pred -cCCCEEEeCCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHcCcCCCccCCccccccCCCCcccccccccccccCC
Confidence 356899999999998988888777789999999999999999721
Q ss_pred ------hHHHHHHHHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 202 ------SLKEKLEAYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 202 ------~~~~rl~~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
.+++|+..|++...++.++|.+.+.++.||++ ++++|+++|.+++...
T Consensus 162 ~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~~~i~~~l~~~ 215 (227)
T 1zd8_A 162 EDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIWPYVYAFLQTK 215 (227)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHHHHHHHHHHhh
Confidence 24578888999999999999877789999998 9999999999999753
No 13
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.94 E-value=2.1e-25 Score=189.93 Aligned_cols=175 Identities=20% Similarity=0.386 Sum_probs=146.2
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhc-CCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcC
Q 023790 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL-SPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDG 153 (277)
Q Consensus 75 ~~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~-~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~ 153 (277)
+.++++|+|+|+|||||||+|+.|++++|+.++++|+++++.. +.++..++.+++++.+|...++++...++.+.+...
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~ 91 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDN 91 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhh
Confidence 4678899999999999999999999999999999999999864 457788899999998999888887777777666532
Q ss_pred CccCccEEEEcCccCCHHHHHHHHhh-cCcCEEEEecCCHHHHHHhhcc-------------hHHHHHHHHHHhchhHHH
Q 023790 154 YYRGEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNRGG-------------SLKEKLEAYAELGKPLED 219 (277)
Q Consensus 154 ~~~~~~g~IldGfPrt~~qae~l~~~-~~~d~vI~L~~~~e~l~~Rl~~-------------~~~~rl~~y~~~~~~l~~ 219 (277)
...+..+||+||+|++..++..++.. ..+|++|+|++|++++.+|+.. .+++|+..|.+...++.+
T Consensus 92 l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~~~~~~~~~~~~ 171 (203)
T 1ukz_A 92 VKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIE 171 (203)
T ss_dssp HHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHHHHH
T ss_pred hccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhhHHHHH
Confidence 11123689999999999988887754 4589999999999999999832 245678888888888888
Q ss_pred HHHhcCcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 220 YYQKQKKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 220 ~y~~~~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
+|...+.++.||++.++++++++|.+.+..
T Consensus 172 ~~~~~~~vi~id~~~~~e~v~~~i~~~l~~ 201 (203)
T 1ukz_A 172 YFETKSKVVRVRCDRSVEDVYKDVQDAIRD 201 (203)
T ss_dssp HHHTTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred HHHhcCcEEEEECCCCHHHHHHHHHHHHhc
Confidence 888777888899999999999999998864
No 14
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.94 E-value=1.9e-25 Score=188.33 Aligned_cols=173 Identities=17% Similarity=0.331 Sum_probs=148.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCc
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~ 155 (277)
.++++|+|+|+|||||||+|+.|++++|++++++|++++.....+++.++.+++.+..|+.++.+....++...+....
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~- 85 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKV- 85 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT-
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhcc-
Confidence 4678999999999999999999999999999999999999877788899999999999999998888888877776432
Q ss_pred cCccEEEEcCccCCHHHHHHHHhh-cCcCEEEEecCCHHHHHHhhcc-------------hHHHHHHHHHHhchhHHHHH
Q 023790 156 RGEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNRGG-------------SLKEKLEAYAELGKPLEDYY 221 (277)
Q Consensus 156 ~~~~g~IldGfPrt~~qae~l~~~-~~~d~vI~L~~~~e~l~~Rl~~-------------~~~~rl~~y~~~~~~l~~~y 221 (277)
..+.++|+||+|++..+++.+... ..++++|+|++|++++.+|+.. .+++|++.|.....++.++|
T Consensus 86 ~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 165 (196)
T 2c95_A 86 NTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFY 165 (196)
T ss_dssp TTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHHHHHH
T ss_pred ccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 246789999999999888777653 5689999999999999999832 24678888888888888888
Q ss_pred HhcCcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 222 QKQKKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 222 ~~~~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
...+.++.||++.++++++++|.+.+..
T Consensus 166 ~~~~~~~~Id~~~~~e~v~~~i~~~l~~ 193 (196)
T 2c95_A 166 EKRGIVRKVNAEGSVDSVFSQVCTHLDA 193 (196)
T ss_dssp HHHTCEEEEECCSCHHHHHHHHHHHHHH
T ss_pred HhcCcEEEEECCCCHHHHHHHHHHHHHH
Confidence 7767788899999999999999999865
No 15
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.94 E-value=1.2e-25 Score=191.53 Aligned_cols=170 Identities=26% Similarity=0.465 Sum_probs=145.5
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCC
Q 023790 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY 154 (277)
Q Consensus 75 ~~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~ 154 (277)
+.++++|+|+|+|||||||+|+.|++++|++++++|+++++.+..+++.+..+++.+..|+.++.+....++.+++...
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~- 95 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNP- 95 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSG-
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhcc-
Confidence 4678899999999999999999999999999999999999987788889999999999999999988888888877653
Q ss_pred ccCccEEEEcCccCCHHHHHHHHhh-----cCcCEEEEecCCHHHHHHhhc---------chHHHHHHHHHHhchhHHHH
Q 023790 155 YRGEIGFILDGLPRSRIQAEILDQL-----AEIDLVVNFKCADNFIVTNRG---------GSLKEKLEAYAELGKPLEDY 220 (277)
Q Consensus 155 ~~~~~g~IldGfPrt~~qae~l~~~-----~~~d~vI~L~~~~e~l~~Rl~---------~~~~~rl~~y~~~~~~l~~~ 220 (277)
..+.+||+||+|++..|++.++.. ..++.+|+|+||++++.+|+. +.+++|++.|.....++.++
T Consensus 96 -~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r~~~~~e~~~~r~~~~~~~~~~~~~~ 174 (201)
T 2cdn_A 96 -DAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLEY 174 (201)
T ss_dssp -GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHTTTHHHH
T ss_pred -cCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhHHHHHH
Confidence 245789999999999888777653 247899999999999999983 23567888888888888887
Q ss_pred HHhcCcEEEEeCCCCHHHHHHHHHHHHH
Q 023790 221 YQKQKKLLEFQVGSAPLETWQGLLTALH 248 (277)
Q Consensus 221 y~~~~~li~Ida~~s~eev~~~I~~~L~ 248 (277)
| ...++.||++.++++++++|.+.+.
T Consensus 175 ~--~~~~~~Id~~~~~eev~~~I~~~l~ 200 (201)
T 2cdn_A 175 Y--RDQLKTVDAVGTMDEVFARALRALG 200 (201)
T ss_dssp T--TTTEEEEECCSCHHHHHHHHHHHTT
T ss_pred h--cCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 7 3467889999999999999998764
No 16
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.93 E-value=8.4e-25 Score=183.42 Aligned_cols=171 Identities=18% Similarity=0.289 Sum_probs=147.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCcc
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (277)
++++|+|+|+|||||||+|+.|++++|+.++++|+++++....+++.+..+++.+..|...+++....++...+...
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~--- 81 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN--- 81 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS---
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc---
Confidence 56789999999999999999999999999999999999887677888999999999999988888888888877653
Q ss_pred CccEEEEcCccCCHHHHHHHHhh----cCcCEEEEecCCHHHHHHhhc-------------chHHHHHHHHHHhchhHHH
Q 023790 157 GEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNRG-------------GSLKEKLEAYAELGKPLED 219 (277)
Q Consensus 157 ~~~g~IldGfPrt~~qae~l~~~----~~~d~vI~L~~~~e~l~~Rl~-------------~~~~~rl~~y~~~~~~l~~ 219 (277)
.+.++|+||+|++..+.+.+... ..++++|+|++|++++.+|+. +.+++|++.|.+...++.+
T Consensus 82 ~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~~~ 161 (194)
T 1qf9_A 82 QGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVID 161 (194)
T ss_dssp TTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHH
T ss_pred CCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHHHH
Confidence 46789999999999887777543 257899999999999999982 2356778888888888888
Q ss_pred HHHhcCcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 220 YYQKQKKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 220 ~y~~~~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
+|...+.++.||++.++++++++|.+.+...
T Consensus 162 ~~~~~~~~~~id~~~~~~~~~~~i~~~l~~~ 192 (194)
T 1qf9_A 162 HYNKFDKVKIIPANRDVNEVYNDVENLFKSM 192 (194)
T ss_dssp HHHHTTCEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred HHHhCCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence 8877777888999999999999999998764
No 17
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.93 E-value=1.6e-25 Score=193.91 Aligned_cols=171 Identities=22% Similarity=0.337 Sum_probs=145.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCcc
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (277)
++++|+|+|+|||||||+|+.|++++|+.++++|+++++..+.+++.|+.+++++.+|+.+|++....++.+++....+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~- 82 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDA- 82 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHH-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccc-
Confidence 6688999999999999999999999999999999999997777889999999999999999998888888777764321
Q ss_pred CccEEEEcCccCCHHHHHHHHhh-cCcCEEEEecCCHHHHHHhhc-----------------------------------
Q 023790 157 GEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNRG----------------------------------- 200 (277)
Q Consensus 157 ~~~g~IldGfPrt~~qae~l~~~-~~~d~vI~L~~~~e~l~~Rl~----------------------------------- 200 (277)
...+||+||+|++..|++.+... ..++++|+|+++++++.+|+.
T Consensus 83 ~~~~~vidg~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d~ 162 (222)
T 1zak_A 83 QENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDT 162 (222)
T ss_dssp HHTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTCC
T ss_pred cCCcEEEECCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccCCCCC
Confidence 24689999999999888888754 457999999999999999962
Q ss_pred -chHHHHHHHHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 201 -GSLKEKLEAYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 201 -~~~~~rl~~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
+.+++|++.|..+..++.++|.. .++.||+++++++++++|.+.+...
T Consensus 163 ~~~i~~Rl~~~~~~~~~l~~~y~~--~~~~Id~~~~~~ev~~~I~~~l~~~ 211 (222)
T 1zak_A 163 EEKVKLRLETYYQNIESLLSTYEN--IIVKVQGDATVDAVFAKIDELLGSI 211 (222)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTCC--CEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--cEEEEECCCCHHHHHHHHHHHHHhh
Confidence 12567788888888888877753 5888999999999999999998753
No 18
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.93 E-value=9e-25 Score=183.54 Aligned_cols=173 Identities=18% Similarity=0.382 Sum_probs=142.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcC-CCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCC-
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS-PRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY- 154 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~-~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~- 154 (277)
++++|+|+|+|||||||+|+.|++++|++++++|+++++... .++.+++.+++++..|...++++...++...+....
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 81 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMA 81 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhc
Confidence 568899999999999999999999999999999999988653 456788889998889998888877777665544311
Q ss_pred -ccCccEEEEcCccCCHHHHHHHHhh----cCcCEEEEecCCHHHHHHhhcc-------------hHHHHHHHHHHhchh
Q 023790 155 -YRGEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNRGG-------------SLKEKLEAYAELGKP 216 (277)
Q Consensus 155 -~~~~~g~IldGfPrt~~qae~l~~~----~~~d~vI~L~~~~e~l~~Rl~~-------------~~~~rl~~y~~~~~~ 216 (277)
...+.+||+||+|++..+.+.+... ..++++|+|++|++++.+|+.. .++++++.|.....+
T Consensus 82 ~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~ 161 (196)
T 1tev_A 82 ANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKP 161 (196)
T ss_dssp HCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhHHH
Confidence 1236789999999998876655432 2578999999999999999822 246788899999999
Q ss_pred HHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 217 LEDYYQKQKKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 217 l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
+.++|.+.+.++.||++.++++++++|.+.+..
T Consensus 162 ~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 194 (196)
T 1tev_A 162 IIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK 194 (196)
T ss_dssp HHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 999998777788999999999999999999875
No 19
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.93 E-value=6.3e-25 Score=185.61 Aligned_cols=173 Identities=24% Similarity=0.419 Sum_probs=145.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCcc
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (277)
++++|+|+|+|||||||+|+.|++++|+.++++|++++.....+++.+..+++.+.+|..++++....++.+.+.... .
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~-~ 89 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASL-G 89 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT-T
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccc-c
Confidence 567899999999999999999999999999999999998876678889999999999999998888888877765431 2
Q ss_pred CccEEEEcCccCCHHHHHHHHhh-cCcCEEEEecCCHHHHHHhhc-------------chHHHHHHHHHHhchhHHHHHH
Q 023790 157 GEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNRG-------------GSLKEKLEAYAELGKPLEDYYQ 222 (277)
Q Consensus 157 ~~~g~IldGfPrt~~qae~l~~~-~~~d~vI~L~~~~e~l~~Rl~-------------~~~~~rl~~y~~~~~~l~~~y~ 222 (277)
.+.+||+||+|.+..+++.+... ..++++|+|++|++++.+|+. +.+.+|+..|.....++.++|.
T Consensus 90 ~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 169 (199)
T 2bwj_A 90 DTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYE 169 (199)
T ss_dssp SCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999888777653 368999999999999999982 2345677777777788888887
Q ss_pred hcCcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 223 KQKKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 223 ~~~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
..+.++.||++.++++++++|.+.+...
T Consensus 170 ~~~~~~~id~~~~~e~v~~~i~~~l~~~ 197 (199)
T 2bwj_A 170 TKTQLHKINAEGTPEDVFLQLCTAIDSI 197 (199)
T ss_dssp HHSEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred hcCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence 7666788999999999999999988753
No 20
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.93 E-value=5.9e-25 Score=184.31 Aligned_cols=166 Identities=28% Similarity=0.441 Sum_probs=139.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCc
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~ 155 (277)
.+++.|+|+|+|||||||+|+.|++++|++++++|+++++.+..+++.+..+++.+.+|...+++.+.+++.+.+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~---- 77 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELA---- 77 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCC----
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhc----
Confidence 4678999999999999999999999999999999999998877788899999999999999998887777765543
Q ss_pred cCccEEEEcCccCCHHHHHHHHhhc-----CcCEEEEecCCHHHHHHhhcc-------------hHHHHHHHHHHhchhH
Q 023790 156 RGEIGFILDGLPRSRIQAEILDQLA-----EIDLVVNFKCADNFIVTNRGG-------------SLKEKLEAYAELGKPL 217 (277)
Q Consensus 156 ~~~~g~IldGfPrt~~qae~l~~~~-----~~d~vI~L~~~~e~l~~Rl~~-------------~~~~rl~~y~~~~~~l 217 (277)
.++|+||+|++..+++.++... .++.+|+|++|++++.+|+.. .+++|++.|.....++
T Consensus 78 ---~~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l 154 (186)
T 3cm0_A 78 ---ERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPL 154 (186)
T ss_dssp ---SEEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred ---CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2499999999988876665431 378999999999999999732 2456778888877888
Q ss_pred HHHHHhcCcEEEEeCCCCHHHHHHHHHHHHH
Q 023790 218 EDYYQKQKKLLEFQVGSAPLETWQGLLTALH 248 (277)
Q Consensus 218 ~~~y~~~~~li~Ida~~s~eev~~~I~~~L~ 248 (277)
.++|...+.++.||++.++++++++|.+.+.
T Consensus 155 ~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~ 185 (186)
T 3cm0_A 155 VGYYEARGVLKRVDGLGTPDEVYARIRAALG 185 (186)
T ss_dssp HHHHHHTTCEEEEECCSCHHHHHHHHHHHHT
T ss_pred HHHHHhcCcEEEEECCCCHHHHHHHHHHHhc
Confidence 8888776678899999999999999998763
No 21
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.87 E-value=1e-20 Score=166.25 Aligned_cols=170 Identities=19% Similarity=0.387 Sum_probs=143.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCcc
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (277)
++.+|+|+|++||||||+++.|++++|+.+++.|++++.....+.+.+..+...+.++...|+..+.+.+...+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~--- 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR--- 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC---
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc---
Confidence 46789999999999999999999999999999999998765555677888888888888888888888777766542
Q ss_pred CccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhc-----------------------------c------
Q 023790 157 GEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG-----------------------------G------ 201 (277)
Q Consensus 157 ~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~-----------------------------~------ 201 (277)
.+.+|++||+|++..+++.+.....++++|+|+++++++++|+. +
T Consensus 103 ~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~ld 182 (246)
T 2bbw_A 103 RGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQE 182 (246)
T ss_dssp TTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCCG
T ss_pred CCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccccccCC
Confidence 35679999999988777777665678999999999999998851 1
Q ss_pred -----hHHHHHHHHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 202 -----SLKEKLEAYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 202 -----~~~~rl~~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
.+.+++..|.++..++.++|.+.+.++.||++.+ ++|+++|.+++...
T Consensus 183 ~~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~~i~~~l~~~ 235 (246)
T 2bbw_A 183 DDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIWPYVYTLFSNK 235 (246)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHHHHHHHHHHhh
Confidence 2457788898888899999988888999999888 99999999999764
No 22
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.75 E-value=3.8e-17 Score=133.77 Aligned_cols=160 Identities=17% Similarity=0.122 Sum_probs=108.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCC----ChhHHHHHHHHhc-cccchHHHHHHHHHHHHHcC
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPR----SSLHKQIANAVNR-GEVVSEDIIFGLLSKRLEDG 153 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~----~~lg~~i~~~l~~-G~~ip~~~~~~ll~~~l~~~ 153 (277)
++|+|+|+|||||||+|+.| +++|+.++++++++++..... ...+......... |. +....++...+..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~- 75 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGD----GVVARLCVEELGT- 75 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCT----THHHHHHHHHHCS-
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCH----HHHHHHHHHHHHh-
Confidence 68999999999999999999 999999999999999865321 2223333333221 32 2344455555532
Q ss_pred CccCccEEEEcCccCCHHHHHHHHhhc-CcCEEEEecCCHHHHHHhhcch--------HHHHHHHHHHh-chhHHHHHHh
Q 023790 154 YYRGEIGFILDGLPRSRIQAEILDQLA-EIDLVVNFKCADNFIVTNRGGS--------LKEKLEAYAEL-GKPLEDYYQK 223 (277)
Q Consensus 154 ~~~~~~g~IldGfPrt~~qae~l~~~~-~~d~vI~L~~~~e~l~~Rl~~~--------~~~rl~~y~~~-~~~l~~~y~~ 223 (277)
..+.++|+||+ ++..+.+.+.+.. .++.+|+|++|++++.+|+..+ .+.-.+.+... ..++..++..
T Consensus 76 --~~~~~vi~dg~-~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 152 (179)
T 3lw7_A 76 --SNHDLVVFDGV-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKLGIGEVIAM 152 (179)
T ss_dssp --CCCSCEEEECC-CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHHHTHHHHHHT
T ss_pred --cCCCeEEEeCC-CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhccChHhHHHh
Confidence 24678999999 8888888887653 6789999999999999998332 11111222111 1123333333
Q ss_pred cCcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 224 QKKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 224 ~~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
.+ +.||++.+++++.++|.+++..
T Consensus 153 ad--~vId~~~~~~~~~~~i~~~l~~ 176 (179)
T 3lw7_A 153 AD--YIITNDSNYEEFKRRCEEVTDR 176 (179)
T ss_dssp CS--EEEECCSCHHHHHHHHHHHHHH
T ss_pred CC--EEEECCCCHHHHHHHHHHHHHH
Confidence 33 3566777999999999998865
No 23
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.72 E-value=4.3e-16 Score=130.36 Aligned_cols=153 Identities=15% Similarity=0.155 Sum_probs=104.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh---CCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHH-----------H
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIF-----------G 144 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~---g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~-----------~ 144 (277)
|+|+|+|+|||||||+|+.|++++ |++++++++ +.++..++.+++.+.+|+..+..... +
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~ 74 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEE 74 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999998 999998852 34566788888888878766653221 1
Q ss_pred HHHHHHHcCCccCccEEEEc----------CccCCHH--HHHHHHhh----cCcCEEEEecCCHHHHHHhhcc-------
Q 023790 145 LLSKRLEDGYYRGEIGFILD----------GLPRSRI--QAEILDQL----AEIDLVVNFKCADNFIVTNRGG------- 201 (277)
Q Consensus 145 ll~~~l~~~~~~~~~g~Ild----------GfPrt~~--qae~l~~~----~~~d~vI~L~~~~e~l~~Rl~~------- 201 (277)
++...+. .+..+|+| |+|+... +...+..+ ..+|++|+|+||++++.+|+..
T Consensus 75 ~i~~~l~-----~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~~~~~ 149 (195)
T 2pbr_A 75 KIIPDLK-----RDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKNRFENK 149 (195)
T ss_dssp THHHHHH-----TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTTCCCCH
T ss_pred HHHHHHh-----CCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccCccchH
Confidence 2222222 24567777 6666432 33333221 2689999999999999999832
Q ss_pred hHHHHH-HHHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 202 SLKEKL-EAYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 202 ~~~~rl-~~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
.+.+++ +.|.+. ...| +.++.||++.++++++++|.+.+..
T Consensus 150 ~~~~~~~~~~~~~----~~~~---~~~~~Id~~~~~~~~~~~i~~~l~~ 191 (195)
T 2pbr_A 150 EFLEKVRKGFLEL----AKEE---ENVVVIDASGEEEEVFKEILRALSG 191 (195)
T ss_dssp HHHHHHHHHHHHH----HHHS---TTEEEEETTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH----HhhC---CCEEEEECCCCHHHHHHHHHHHHHH
Confidence 122222 122221 1112 4678899999999999999998864
No 24
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.72 E-value=1.1e-16 Score=139.96 Aligned_cols=169 Identities=11% Similarity=0.032 Sum_probs=109.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCC--CccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHH-HHHHHHHHHc
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV--PRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII-FGLLSKRLED 152 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~--~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~-~~ll~~~l~~ 152 (277)
.+++.|+|+|+|||||||+++.|+++++. .++.+ ..+.+++.++.+++++.+|...+.... .-....+...
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~------~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~ 97 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT------REPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREH 97 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE------CTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee------cCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999974 33322 345677889999999988875333222 2222233322
Q ss_pred C------CccCccEEEEc----------CccCCHHHH--HHHHhh----cCcCEEEEecCCHHHHHHhhcch------HH
Q 023790 153 G------YYRGEIGFILD----------GLPRSRIQA--EILDQL----AEIDLVVNFKCADNFIVTNRGGS------LK 204 (277)
Q Consensus 153 ~------~~~~~~g~Ild----------GfPrt~~qa--e~l~~~----~~~d~vI~L~~~~e~l~~Rl~~~------~~ 204 (277)
. ....+..+|+| |+|++..+. +.++.+ ..||++|+|++|++++.+|+..+ ++
T Consensus 98 ~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr~e 177 (229)
T 4eaq_A 98 LVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLD 177 (229)
T ss_dssp CCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----CCC
T ss_pred HHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccchh
Confidence 1 01235678999 999876543 344432 47999999999999999998432 11
Q ss_pred HHHHHHHHhchh-HHHHHHh-cCcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 205 EKLEAYAELGKP-LEDYYQK-QKKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 205 ~rl~~y~~~~~~-l~~~y~~-~~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
..-..|.+.... .....+. .+.++.||+++++++++++|.+++...
T Consensus 178 ~~~~~~~~rv~~~y~~l~~~~~~~~~vIDa~~s~eev~~~I~~~l~~~ 225 (229)
T 4eaq_A 178 QEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKY 225 (229)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCTTTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 111122222211 1111111 246889999999999999999998753
No 25
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.69 E-value=4.3e-16 Score=132.32 Aligned_cols=161 Identities=12% Similarity=0.070 Sum_probs=107.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHH---HHHHHHHHHcC
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII---FGLLSKRLEDG 153 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~---~~ll~~~l~~~ 153 (277)
++++|+|+|+|||||||+|+.|++.+|+.+++.+++.... ....+..|....+... ...+...+
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~----------~~~~~~~g~~~~~~~~~~~~~~l~~~~--- 83 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPE----------NIRKMSEGIPLTDDDRWPWLAAIGERL--- 83 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHH----------HHHHHHHTCCCCHHHHHHHHHHHHHHH---
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchh----------hHHHHhcCCCCCchhhHHHHHHHHHHH---
Confidence 4678999999999999999999999999999998764321 1111222333332221 22222222
Q ss_pred CccCccEEEEcCccCCHHHHHHHHhhc-CcCEEEEecCCHHHHHHhhcchH-----HHHHHHHHHhchhHHHHHHhcCcE
Q 023790 154 YYRGEIGFILDGLPRSRIQAEILDQLA-EIDLVVNFKCADNFIVTNRGGSL-----KEKLEAYAELGKPLEDYYQKQKKL 227 (277)
Q Consensus 154 ~~~~~~g~IldGfPrt~~qae~l~~~~-~~d~vI~L~~~~e~l~~Rl~~~~-----~~rl~~y~~~~~~l~~~y~~~~~l 227 (277)
..+.++|+|+......+.+.+.... .++.+|+|++|.+++.+|+..+- .+.++...+...++ +. ....
T Consensus 84 --~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~---~~-~~~~ 157 (202)
T 3t61_A 84 --ASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFMPSSLLQTQLETLEDP---RG-EVRT 157 (202)
T ss_dssp --TSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHCCCC---TT-STTE
T ss_pred --hcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCCCHHHHHHHHHhcCCC---CC-CCCe
Confidence 2356789998877777667776543 34789999999999999984321 12222222222222 21 2246
Q ss_pred EEEeCCCCHHHHHHHHHHHHHHccccccC
Q 023790 228 LEFQVGSAPLETWQGLLTALHLQHINAAY 256 (277)
Q Consensus 228 i~Ida~~s~eev~~~I~~~L~~~~~~~~~ 256 (277)
+.||++.++++++++|.+.|...++...+
T Consensus 158 ~~Id~~~~~~e~~~~I~~~l~~~~~~~~~ 186 (202)
T 3t61_A 158 VAVDVAQPLAEIVREALAGLARLAENLYF 186 (202)
T ss_dssp EEEESSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHhhhccee
Confidence 78898999999999999999988766533
No 26
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=4.5e-16 Score=132.26 Aligned_cols=158 Identities=13% Similarity=0.146 Sum_probs=101.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHh-ccccchHHHHHHHHHHHHHcCC
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGY 154 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~ 154 (277)
.++..|+|+|+|||||||+++.|++.+|+.++++++++..... .. +.+.+. .|.........+++... .
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g--~~----i~~~~~~~~~~~~~~~e~~~l~~l-~--- 92 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFH--KT----VGELFTERGEAGFRELERNMLHEV-A--- 92 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT--SC----HHHHHHHHHHHHHHHHHHHHHHHH-T---
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhC--Cc----HHHHHHhcChHHHHHHHHHHHHHH-h---
Confidence 4567899999999999999999999999999999998876532 22 222322 22222223333333332 2
Q ss_pred ccCccEEEEc---CccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhc-ch----------HHHHHHHHHHhchhHHHH
Q 023790 155 YRGEIGFILD---GLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG-GS----------LKEKLEAYAELGKPLEDY 220 (277)
Q Consensus 155 ~~~~~g~Ild---GfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~-~~----------~~~rl~~y~~~~~~l~~~ 220 (277)
...++|++ |.+......+.+.. ++.+|+|++|.+++.+|+. .+ .++-.+.+.+........
T Consensus 93 --~~~~~vi~~ggg~~~~~~~~~~l~~---~~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~~r~~~ 167 (199)
T 3vaa_A 93 --EFENVVISTGGGAPCFYDNMEFMNR---TGKTVFLNVHPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQALEKRAPF 167 (199)
T ss_dssp --TCSSEEEECCTTGGGSTTHHHHHHH---HSEEEEEECCHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHHHHHHH
T ss_pred --hcCCcEEECCCcEEccHHHHHHHHc---CCEEEEEECCHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHHHHHHH
Confidence 23567777 55655544455543 6899999999999999995 21 111112223333334455
Q ss_pred HHhcCcEEEEeCC-CCHHHHHHHHHHHHHHc
Q 023790 221 YQKQKKLLEFQVG-SAPLETWQGLLTALHLQ 250 (277)
Q Consensus 221 y~~~~~li~Ida~-~s~eev~~~I~~~L~~~ 250 (277)
|... -+.||++ .++++++++|.+.+...
T Consensus 168 y~~a--d~~Idt~~~s~ee~~~~I~~~l~~~ 196 (199)
T 3vaa_A 168 YTQA--QYIFNADELEDRWQIESSVQRLQEL 196 (199)
T ss_dssp HTTS--SEEEECCCCSSHHHHHHHHHHHHHH
T ss_pred HhhC--CEEEECCCCCHHHHHHHHHHHHHHH
Confidence 6653 3456765 49999999999998753
No 27
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.68 E-value=2.3e-15 Score=129.47 Aligned_cols=162 Identities=10% Similarity=0.022 Sum_probs=104.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh--CCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHH-----------
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL--EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIF----------- 143 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~--g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~----------- 143 (277)
+++.|+|.|++||||||+++.|++++ |..++-+ ..+.+++.|+.+++.+.++...+.....
T Consensus 1 M~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~------~eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~ 74 (205)
T 4hlc_A 1 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT------REPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHL 74 (205)
T ss_dssp -CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE------ESSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe------eCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999998 4433322 2356788999999998887655443221
Q ss_pred -HHHHHHHHcCCccCccEEEEcCcc----------CC--HHHHHHHHhh----cCcCEEEEecCCHHHHHHhhcch----
Q 023790 144 -GLLSKRLEDGYYRGEIGFILDGLP----------RS--RIQAEILDQL----AEIDLVVNFKCADNFIVTNRGGS---- 202 (277)
Q Consensus 144 -~ll~~~l~~~~~~~~~g~IldGfP----------rt--~~qae~l~~~----~~~d~vI~L~~~~e~l~~Rl~~~---- 202 (277)
+.+...+. .+..+|.|.|. +. ......+... ..||++|+|++|++++.+|+..+
T Consensus 75 ~~~i~p~l~-----~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~ 149 (205)
T 4hlc_A 75 VLKVIPALK-----EGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQ 149 (205)
T ss_dssp HHTHHHHHH-----TTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC-----
T ss_pred HHHHHHHHH-----cCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCcc
Confidence 12222222 24556667543 21 2223333332 47999999999999999998322
Q ss_pred --HHHHHHHHHHhch-hHHHHHHh-cCcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 203 --LKEKLEAYAELGK-PLEDYYQK-QKKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 203 --~~~rl~~y~~~~~-~l~~~y~~-~~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
++..-..|.+.+. ...+..+. .++++.||+++++++|.++|.+.+..
T Consensus 150 dr~e~~~~~f~~~v~~~Y~~l~~~~~~~~~~IDa~~~~e~V~~~i~~~i~~ 200 (205)
T 4hlc_A 150 NRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIK 200 (205)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHSCCTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred cchhccCHHHHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 2121223433322 12222322 34699999999999999999998865
No 28
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.67 E-value=2.2e-16 Score=138.13 Aligned_cols=172 Identities=15% Similarity=0.119 Sum_probs=107.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhH---HHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHc
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS---IVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLED 152 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~d---llr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~ 152 (277)
.+++.|+|.|++||||||+++.|+++++..+++++- +.| .+.++++|+.+++++.+|.+.|.....-...++.+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r--ep~~t~~g~~ir~~l~~~~~~~~~~~llf~a~R~~~ 100 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR--EPGGTRLGETLREILLNQPMDLETEALLMFAGRREH 100 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE--SSSSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec--CCCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 578999999999999999999999998544333321 122 246788999999999988766544332222233221
Q ss_pred C------CccCccEEEEcCccCC------------HHHHHHHHh----hcCcCEEEEecCCHHHHHHhhcch-----HHH
Q 023790 153 G------YYRGEIGFILDGLPRS------------RIQAEILDQ----LAEIDLVVNFKCADNFIVTNRGGS-----LKE 205 (277)
Q Consensus 153 ~------~~~~~~g~IldGfPrt------------~~qae~l~~----~~~~d~vI~L~~~~e~l~~Rl~~~-----~~~ 205 (277)
. ....+..+|.|.|..+ ..+...++. ...||++|+|++|++++.+|+..+ ++.
T Consensus 101 ~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~~dr~E~ 180 (227)
T 3v9p_A 101 LALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMPDKFES 180 (227)
T ss_dssp HHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCCC---CC
T ss_pred HHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccCccchhh
Confidence 0 0123566788866432 122333332 257999999999999999998532 221
Q ss_pred HHHHHHHhchh-HHHHHHh-cCcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 206 KLEAYAELGKP-LEDYYQK-QKKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 206 rl~~y~~~~~~-l~~~y~~-~~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
.-..|.+.... ...+.+. .+.++.||+++++++|.++|.+.+..
T Consensus 181 ~~~ef~~rv~~~Y~~la~~~~~~~~vIDa~~s~eeV~~~I~~~l~~ 226 (227)
T 3v9p_A 181 ESDAFFARTRAEYLRRAQEAPHRFVIVDSSEPIAQIRKQLEGVLAA 226 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 11223322221 1222221 34699999999999999999998864
No 29
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.67 E-value=1.6e-16 Score=135.22 Aligned_cols=168 Identities=13% Similarity=0.153 Sum_probs=110.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHH-------
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSK------- 148 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~------- 148 (277)
+++++|+|+|+|||||||+|+.|+++++..++++ +++++. ..+++.++.+++++..+..++......+...
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~-~~~~~~-~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV-KHLYFP-NRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMN 85 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE-EEEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE-EEEecC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999888887 444432 3357788888888877666654433222211
Q ss_pred HHHcCCccCccEEEEcCccCCH--HHH-------HHHHh----hcCcCEEEEecCCHHHHHHhhcchHHHHH--HHHHHh
Q 023790 149 RLEDGYYRGEIGFILDGLPRSR--IQA-------EILDQ----LAEIDLVVNFKCADNFIVTNRGGSLKEKL--EAYAEL 213 (277)
Q Consensus 149 ~l~~~~~~~~~g~IldGfPrt~--~qa-------e~l~~----~~~~d~vI~L~~~~e~l~~Rl~~~~~~rl--~~y~~~ 213 (277)
.+... ...+..+|+|+++.+. .+. +.+.. ...+|++|+|++|++++.+|+..+- .|+ ..+.+
T Consensus 86 ~i~~~-l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~-~r~~~~~~~~- 162 (212)
T 2wwf_A 86 EIKSL-LLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGE-EIYEKVETQK- 162 (212)
T ss_dssp HHHHH-HHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTS-STTCSHHHHH-
T ss_pred HHHHH-HhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCc-ccccHHHHHH-
Confidence 11110 1124679999998642 121 22221 1368999999999999999984320 011 11111
Q ss_pred chhHHHHHHh---cCcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 214 GKPLEDYYQK---QKKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 214 ~~~l~~~y~~---~~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
.+...|.+ ...++.||++.++++++++|.+.+...
T Consensus 163 --~~~~~~~~~~~~~~~~~Id~~~~~~~~~~~i~~~l~~~ 200 (212)
T 2wwf_A 163 --KIYETYKHFAHEDYWINIDATRKIEDIHNDIVKEVTKI 200 (212)
T ss_dssp --HHHHHGGGGTTCTTEEEEECSSCHHHHHHHHHHHHTTS
T ss_pred --HHHHHHHHHhccCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence 12233322 235788999999999999999998754
No 30
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.66 E-value=8.8e-16 Score=128.18 Aligned_cols=162 Identities=9% Similarity=0.107 Sum_probs=97.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhC-----CCccchhHHHHHhc-CCCChhHHHHHHHHhccccchH--HHHHHHHHHH
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQDL-SPRSSLHKQIANAVNRGEVVSE--DIIFGLLSKR 149 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g-----~~~Is~~dllr~~~-~~~~~lg~~i~~~l~~G~~ip~--~~~~~ll~~~ 149 (277)
++.|+|+|+|||||||+|+.|+++++ +.+++.++++++.+ ...-..+. + ..+.+.++ ......+..+
T Consensus 1 M~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~ 75 (194)
T 1nks_A 1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDR---D--EMRKLSVEKQKKLQIDAAKG 75 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSH---H--HHTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccch---h--hhhcCCHHHHHHHHHHHHHH
Confidence 36899999999999999999999998 88999999987654 22111000 0 01223333 2222222222
Q ss_pred HHcCCc--cCccEEEEcCccCCHHH--------HHHHHhhcCcCEEEEecCCHHHHHHh-hcc--h-----H-HHHHHH-
Q 023790 150 LEDGYY--RGEIGFILDGLPRSRIQ--------AEILDQLAEIDLVVNFKCADNFIVTN-RGG--S-----L-KEKLEA- 209 (277)
Q Consensus 150 l~~~~~--~~~~g~IldGfPrt~~q--------ae~l~~~~~~d~vI~L~~~~e~l~~R-l~~--~-----~-~~rl~~- 209 (277)
+... . ..+..+|+||++....| .+.+... .++.+|+|++|++++.+| +.. + . ...++.
T Consensus 76 i~~~-l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~vi~l~~~~~~~~~rr~~~~~R~~~~~~~~~~~~~~ 153 (194)
T 1nks_A 76 IAEE-ARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEI-NPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILET 153 (194)
T ss_dssp HHHH-HHHTCSSEEEEEECSEEEETTEEEESSCHHHHHHH-CCSEEEEEECCHHHHHHHHHHCTTTCCCCCCSHHHHHHH
T ss_pred HHHH-hhccCCCEEEECCchhhccccccccCCCHHHHHhc-CCCEEEEEeCCHHHHHHHHHhhcccCCCCccCHHHHHHH
Confidence 2221 0 13578999997543222 2333332 589999999999998866 533 2 1 111111
Q ss_pred --HHHhchhHHHHHHhcCcEEEE-eCCCCHHHHHHHHHHHH
Q 023790 210 --YAELGKPLEDYYQKQKKLLEF-QVGSAPLETWQGLLTAL 247 (277)
Q Consensus 210 --y~~~~~~l~~~y~~~~~li~I-da~~s~eev~~~I~~~L 247 (277)
..+......+.|. ...++.| |++.++++++++|.+++
T Consensus 154 ~~~~~~~~~~~~~~~-~~~~~~I~d~~~~~e~v~~~I~~~l 193 (194)
T 1nks_A 154 INFARYAATASAVLA-GSTVKVIVNVEGDPSIAANEIIRSM 193 (194)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-CCcEEEEeCCCCCHHHHHHHHHHHh
Confidence 1122222233332 2457888 98999999999999876
No 31
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.65 E-value=6.9e-15 Score=123.46 Aligned_cols=157 Identities=15% Similarity=0.180 Sum_probs=101.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh---CCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHH-------HHHHH
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIF-------GLLSK 148 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~---g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~-------~ll~~ 148 (277)
+.|+|+|+|||||||+|+.|++++ |+.++.+.+ +.+++.++.+++.+..|...+..... ..+..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 74 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC------CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999 999887632 45678888999888877766543222 11222
Q ss_pred HHHcCCccCccEEEEc----------CccCCHH--HHHHHHh----hcCcCEEEEecCCHHHHHHhhcch-------HHH
Q 023790 149 RLEDGYYRGEIGFILD----------GLPRSRI--QAEILDQ----LAEIDLVVNFKCADNFIVTNRGGS-------LKE 205 (277)
Q Consensus 149 ~l~~~~~~~~~g~Ild----------GfPrt~~--qae~l~~----~~~~d~vI~L~~~~e~l~~Rl~~~-------~~~ 205 (277)
+... ...+..+|+| |+++... ....+.. ...||++|+|++|++++.+|+..+ +.+
T Consensus 75 -i~~~-l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~ 152 (197)
T 2z0h_A 75 -IKQY-LSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRFEKREFLE 152 (197)
T ss_dssp -HTTC-----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CCCCCHHHHH
T ss_pred -HHHH-HhCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhccCcccHHHHHH
Confidence 2221 2234567777 4454322 2222221 236899999999999999998532 112
Q ss_pred HHH-HHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 206 KLE-AYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 206 rl~-~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
++. .|. .+.+.+ ...++.||++.++++++++|.+.+..
T Consensus 153 ~~~~~~~----~~~~~~--~~~~~~Id~~~~~e~~~~~i~~~l~~ 191 (197)
T 2z0h_A 153 RVREGYL----VLAREH--PERIVVLDGKRSIEEIHRDVVREVKR 191 (197)
T ss_dssp HHHHHHH----HHHHHC--TTTEEEEETTSCHHHHHHHHHHHTTC
T ss_pred HHHHHHH----HHHHhC--CCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 211 122 222222 24578899999999999999998864
No 32
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.65 E-value=2.1e-15 Score=127.53 Aligned_cols=161 Identities=15% Similarity=0.148 Sum_probs=102.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh-CCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHH--HH----
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLS--KR---- 149 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~-g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~--~~---- 149 (277)
+++.|+|+|+|||||||+++.|++++ |++++++. +....++.++.+++++..+...+.... .++. .+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~-----~~~~~~~~g~~i~~~~~~~~~~~~~~~-~~l~~~~r~~~~ 76 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN-----FPQRSTVTGKMIDDYLTRKKTYNDHIV-NLLFCANRWEFA 76 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE-----SSCTTSHHHHHHHHHHTSSCCCCHHHH-HHHHHHHHHTTH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe-----cCCCCCcHHHHHHHHHhcCCCCCHHHH-HHHHHHHHHHHH
Confidence 57899999999999999999999999 67777752 111145678888888876654433221 2210 11
Q ss_pred --HHcCCccCccEEEEcCccCCHH--H------HHHHHh----hcCcCEEEEecCCHHHHHHhh-cc-----hHHHHHHH
Q 023790 150 --LEDGYYRGEIGFILDGLPRSRI--Q------AEILDQ----LAEIDLVVNFKCADNFIVTNR-GG-----SLKEKLEA 209 (277)
Q Consensus 150 --l~~~~~~~~~g~IldGfPrt~~--q------ae~l~~----~~~~d~vI~L~~~~e~l~~Rl-~~-----~~~~rl~~ 209 (277)
+... ...+..+|+|+||.+.. + .+.+.. ...||++|+|++|++++.++- .+ .+.+|+..
T Consensus 77 ~~i~~~-l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~~R~~d~~e~~~~~~rl~~ 155 (204)
T 2v54_A 77 SFIQEQ-LEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINRNVGEEIYEDVTFQQKVLQ 155 (204)
T ss_dssp HHHHHH-HHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTTCCSSSTTCCSHHHHHHHH
T ss_pred HHHHHH-HHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHhhcCcccccHHHHHHHHHH
Confidence 1110 11346789999986432 1 122221 136899999999999998721 01 22333332
Q ss_pred -HHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 210 -YAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 210 -y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
|.+... .....+++||++.++++++++|.+.+...
T Consensus 156 ~y~~~~~------~~~~~~~~Id~~~~~~~v~~~i~~~l~~~ 191 (204)
T 2v54_A 156 EYKKMIE------EGDIHWQIISSEFEEDVKKELIKNIVIEA 191 (204)
T ss_dssp HHHHHHT------TCSSCEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH------hCCCcEEEEECCCCHHHHHHHHHHHHHHH
Confidence 222110 11235788999999999999999998753
No 33
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.63 E-value=4.4e-15 Score=125.86 Aligned_cols=158 Identities=13% Similarity=0.129 Sum_probs=93.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCC--ccchhHHHHHhcCCCChhHHHHHHHHhccc----cchHH--HH-----H
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP--RISMSSIVRQDLSPRSSLHKQIANAVNRGE----VVSED--II-----F 143 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~--~Is~~dllr~~~~~~~~lg~~i~~~l~~G~----~ip~~--~~-----~ 143 (277)
++++|+|+|+|||||||+|+.|+++++.. ++.+. .+.++.+++.+..+. ..+.. +. .
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~----------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~ 72 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTE----------WNSSDWIHDIIKEAKKKDLLTPLTFSLIHATDFS 72 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEE----------TTCCCHHHHHHHHHTTTSCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEec----------CCcHHHHHHHHhccccccCCCHHHHHHHHHHHHH
Confidence 56899999999999999999999999874 33310 112223444443332 11110 00 0
Q ss_pred HHHHHHHHcCCccCccEEEEcCccCCHH--H---------HHHHHhh-cCcCEEEEecCCHHHHHHhhc-chH-------
Q 023790 144 GLLSKRLEDGYYRGEIGFILDGLPRSRI--Q---------AEILDQL-AEIDLVVNFKCADNFIVTNRG-GSL------- 203 (277)
Q Consensus 144 ~ll~~~l~~~~~~~~~g~IldGfPrt~~--q---------ae~l~~~-~~~d~vI~L~~~~e~l~~Rl~-~~~------- 203 (277)
..+...+... ...+..+|+|++|.+.. | .+.+... ..++++|+|++|++++.+|+. .+-
T Consensus 73 ~~~~~~i~~~-l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~~~~~~~~ 151 (213)
T 2plr_A 73 DRYERYILPM-LKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRKIKPQEA 151 (213)
T ss_dssp HHHHHTHHHH-HHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTCCCCTTTT
T ss_pred HHHHHHHHHH-HhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccccc
Confidence 0111111110 12356789999987532 1 2223222 358999999999999999985 331
Q ss_pred -----------HHHHHHHHHhchhHHHHHHh---cCcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 204 -----------KEKLEAYAELGKPLEDYYQK---QKKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 204 -----------~~rl~~y~~~~~~l~~~y~~---~~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
+.. ..|.+.. ..+|.+ ...+++||++.++++++++|.+.+..
T Consensus 152 g~~~~~~~d~~e~~-~~~~~r~---~~~~~~~~~~~~~~~Id~~~~~e~v~~~I~~~l~~ 207 (213)
T 2plr_A 152 GADIFPGLSPEEGF-LKYQGLI---TEVYDKLVKDENFIVIDGTKTPKEIQIQIRKFVGE 207 (213)
T ss_dssp TTTTCTTSCHHHHH-HHHHHHH---HHHHHHHTTTTTCEEEETTSCHHHHHHHHHHHHHH
T ss_pred ccccccccchhhhH-HHHHHHH---HHHHHHHHhhCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 111 2333322 223322 12578899999999999999999875
No 34
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.63 E-value=3.1e-15 Score=122.81 Aligned_cols=152 Identities=16% Similarity=0.238 Sum_probs=95.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHh-ccccchHHHHHHHHHHHHHcCCccC
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYYRG 157 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~~~ 157 (277)
|+|+|+|+|||||||+|+.|++++|+++++++++.++... ..+++.+. .|......+...++. .+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~l~-~l~~----- 68 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKREG------LSIPQIFEKKGEAYFRKLEFEVLK-DLSE----- 68 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT------SCHHHHHHHSCHHHHHHHHHHHHH-HHTT-----
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHcC------CCHHHHHHHhChHHHHHHHHHHHH-HHhc-----
Confidence 5799999999999999999999999999999999877542 22333332 232222222222222 2321
Q ss_pred ccEEEEc-C--ccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcch-----H---HHHHH-HHHHhchhHHHHHHhcC
Q 023790 158 EIGFILD-G--LPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS-----L---KEKLE-AYAELGKPLEDYYQKQK 225 (277)
Q Consensus 158 ~~g~Ild-G--fPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~-----~---~~rl~-~y~~~~~~l~~~y~~~~ 225 (277)
...+|++ | .+......+.+. .++.+|+|++|++++.+|+..+ . .+++. .|. ...+.|.. .
T Consensus 69 ~~~~Vi~~g~~~~~~~~~~~~l~---~~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~i~~~~~----~~~~~~~~-~ 140 (168)
T 2pt5_A 69 KENVVISTGGGLGANEEALNFMK---SRGTTVFIDIPFEVFLERCKDSKERPLLKRPLDEIKNLFE----ERRKIYSK-A 140 (168)
T ss_dssp SSSEEEECCHHHHTCHHHHHHHH---TTSEEEEEECCHHHHHHHCBCTTCCBGGGSCGGGTHHHHH----HHHHHHTT-S
T ss_pred cCCeEEECCCCEeCCHHHHHHHH---cCCEEEEEECCHHHHHHHHhCCCCCCCCcchHHHHHHHHH----HHHHHHHh-C
Confidence 3456664 4 222333333343 3789999999999999998531 1 11121 122 12234544 3
Q ss_pred cEEEEeCCCCHHHHHHHHHHHHHHcc
Q 023790 226 KLLEFQVGSAPLETWQGLLTALHLQH 251 (277)
Q Consensus 226 ~li~Ida~~s~eev~~~I~~~L~~~~ 251 (277)
.++. +++.++++++++|.+.+...+
T Consensus 141 ~~~i-~~~~~~~~~~~~i~~~l~~~~ 165 (168)
T 2pt5_A 141 DIKV-KGEKPPEEVVKEILLSLEGNA 165 (168)
T ss_dssp SEEE-ECSSCHHHHHHHHHHHHHTSC
T ss_pred CEEE-CCCCCHHHHHHHHHHHHHhcc
Confidence 4545 777999999999999987643
No 35
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.62 E-value=7.7e-15 Score=127.03 Aligned_cols=167 Identities=11% Similarity=0.041 Sum_probs=104.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhcc------ccchHHHH--------
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG------EVVSEDII-------- 142 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G------~~ip~~~~-------- 142 (277)
+++.|+|.|++||||||+++.|++++.-..++...+.+ .+.++++|+.+++++..+ .+-|....
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~r--ep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~ 79 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTR--EPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARV 79 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE--SSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeee--CCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHH
Confidence 57899999999999999999999988433321101112 356789999999998732 22232111
Q ss_pred ---HHHHHHHHHcCCccCccEEEEcCccCC------------HHHHHHHHhh----cCcCEEEEecCCHHHHHHhhcch-
Q 023790 143 ---FGLLSKRLEDGYYRGEIGFILDGLPRS------------RIQAEILDQL----AEIDLVVNFKCADNFIVTNRGGS- 202 (277)
Q Consensus 143 ---~~ll~~~l~~~~~~~~~g~IldGfPrt------------~~qae~l~~~----~~~d~vI~L~~~~e~l~~Rl~~~- 202 (277)
.+.+...+. .+..+|.|.|..+ ..+...++.. ..||++|+|++|++++++|+..+
T Consensus 80 ~~~~~~i~paL~-----~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~ 154 (213)
T 4tmk_A 80 QLVETVIKPALA-----NGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARG 154 (213)
T ss_dssp HHHHHTHHHHHH-----TTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHH-----CCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 122333333 3456777754321 2233333332 47999999999999999998432
Q ss_pred ----HHHHHHHHHHhchhH-HHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 203 ----LKEKLEAYAELGKPL-EDYYQKQKKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 203 ----~~~rl~~y~~~~~~l-~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
++.+-..|.+..... ..+.+..+.+++||+++++++|+++|.+.+...
T Consensus 155 ~~dr~E~~~~~f~~rv~~~y~~la~~~~~~~vIDa~~s~eeV~~~I~~~l~~~ 207 (213)
T 4tmk_A 155 ELDRIEQESFDFFNRTRARYLELAAQDKSIHTIDATQPLEAVMDAIRTTVTHW 207 (213)
T ss_dssp SCCTTTTSCHHHHHHHHHHHHHHHHTCTTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred CccchhhhHHHHHHHHHHHHHHHHHHCCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 221112233333222 122222357999999999999999999998764
No 36
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.61 E-value=1.4e-14 Score=120.88 Aligned_cols=153 Identities=21% Similarity=0.208 Sum_probs=95.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHH-hccccchHHHHHHHHHHHHHcCCcc
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV-NRGEVVSEDIIFGLLSKRLEDGYYR 156 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l-~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (277)
+++|+|+|+|||||||+|+.|++++|++++++|+++++... .+ +.+.+ ..|.....+...+++...+..
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g--~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~---- 71 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTG--RS----IADIFATDGEQEFRRIEEDVVRAALAD---- 71 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHS--SC----HHHHHHHHCHHHHHHHHHHHHHHHHHH----
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcC--CC----HHHHHHHhChHHHHHHHHHHHHHHHhc----
Confidence 45799999999999999999999999999999999887642 22 22223 234444444444445443332
Q ss_pred CccEEEEcC--ccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcch----------HHHHHHHHHHhchhHHHHHHhc
Q 023790 157 GEIGFILDG--LPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS----------LKEKLEAYAELGKPLEDYYQKQ 224 (277)
Q Consensus 157 ~~~g~IldG--fPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~----------~~~rl~~y~~~~~~l~~~y~~~ 224 (277)
...+|.+| +.......+.+. .+.+|+|+||.+++.+|+..+ ..++++.+... ...+|...
T Consensus 72 -~~~vi~~g~~~v~~~~~~~~l~----~~~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~~~~~~---r~~~~~~~ 143 (184)
T 2iyv_A 72 -HDGVLSLGGGAVTSPGVRAALA----GHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAK---RAPLYRRV 143 (184)
T ss_dssp -CCSEEECCTTGGGSHHHHHHHT----TSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHH---HHHHHHHH
T ss_pred -CCeEEecCCcEEcCHHHHHHHc----CCeEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHH---HHHHHhcc
Confidence 12233334 222222222221 578999999999999998321 22344433222 23345432
Q ss_pred CcEEEEeCC-CCHHHHHHHHHHHHHH
Q 023790 225 KKLLEFQVG-SAPLETWQGLLTALHL 249 (277)
Q Consensus 225 ~~li~Ida~-~s~eev~~~I~~~L~~ 249 (277)
. .+.||++ .++++++++|.+.+..
T Consensus 144 ~-~~~Idt~~~s~ee~~~~I~~~l~~ 168 (184)
T 2iyv_A 144 A-TMRVDTNRRNPGAVVRHILSRLQV 168 (184)
T ss_dssp C-SEEEECSSSCHHHHHHHHHTTSCC
T ss_pred C-CEEEECCCCCHHHHHHHHHHHHhh
Confidence 2 2567877 7999999999987753
No 37
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.61 E-value=5.5e-15 Score=121.76 Aligned_cols=153 Identities=10% Similarity=0.043 Sum_probs=93.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHh-ccccchHHHHHHHHHHHHHcCCcc
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYYR 156 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~~ 156 (277)
+++|+|+|+|||||||+|+.|++++|++++++|+++++.. +.+... .+. .|.....++...++. .+.
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~--g~~~~~----~~~~~~~~~~~~~~~~~~~-~l~----- 69 (173)
T 1e6c_A 2 TEPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTS--GMTVAD----VVAAEGWPGFRRRESEALQ-AVA----- 69 (173)
T ss_dssp CCCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH--CSCHHH----HHHHHHHHHHHHHHHHHHH-HHC-----
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHh--CCCHHH----HHHHcCHHHHHHHHHHHHH-Hhh-----
Confidence 4579999999999999999999999999999999987652 222222 221 122222222222222 222
Q ss_pred CccEEEEc-C--ccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhc--ch------H--HHHHHHHHHhchhHHHHHHh
Q 023790 157 GEIGFILD-G--LPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG--GS------L--KEKLEAYAELGKPLEDYYQK 223 (277)
Q Consensus 157 ~~~g~Ild-G--fPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~--~~------~--~~rl~~y~~~~~~l~~~y~~ 223 (277)
..++|++ | .+......+.+.. ++.+|+|++|++++.+|+. .+ . ....+.++.........|..
T Consensus 70 -~~~~vi~~g~~~~~~~~~~~~l~~---~~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (173)
T 1e6c_A 70 -TPNRVVATGGGMVLLEQNRQFMRA---HGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALYQD 145 (173)
T ss_dssp -CSSEEEECCTTGGGSHHHHHHHHH---HSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cCCeEEECCCcEEeCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 2345554 5 3333333344432 6899999999999999986 33 1 11111222222223334443
Q ss_pred cCcEEEEeCC-CCHHHHHHHHHHHHH
Q 023790 224 QKKLLEFQVG-SAPLETWQGLLTALH 248 (277)
Q Consensus 224 ~~~li~Ida~-~s~eev~~~I~~~L~ 248 (277)
. .+.||++ .++++++++|.+.+.
T Consensus 146 ~--~~~Id~~~~~~~~~~~~i~~~l~ 169 (173)
T 1e6c_A 146 V--AHYVVDATQPPAAIVCELMQTMR 169 (173)
T ss_dssp H--CSEEEETTSCHHHHHHHHHHHTT
T ss_pred C--cEEEECCCCCHHHHHHHHHHHhc
Confidence 2 2456776 899999999998875
No 38
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.61 E-value=1.5e-15 Score=129.30 Aligned_cols=167 Identities=14% Similarity=0.120 Sum_probs=100.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHH-----------
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFG----------- 144 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~----------- 144 (277)
++++.|+|+|+|||||||+|+.|+++++..++++. .+++. ..+++.+..+++++..+...+......
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~-~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 84 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAE-LLRFP-ERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVP 84 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE-EEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE-EeeCC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999877666652 22221 124667788888887665454432211
Q ss_pred HHHHHHHcCCccCccEEEEcCcc-----CCHH----HHHHHHhh----cCcCEEEEecCCHHHHHHhhcchHHHHHH--H
Q 023790 145 LLSKRLEDGYYRGEIGFILDGLP-----RSRI----QAEILDQL----AEIDLVVNFKCADNFIVTNRGGSLKEKLE--A 209 (277)
Q Consensus 145 ll~~~l~~~~~~~~~g~IldGfP-----rt~~----qae~l~~~----~~~d~vI~L~~~~e~l~~Rl~~~~~~rl~--~ 209 (277)
.+...+. .+..+|+|.+. +... ..+.+..+ ..+|++|+|++|++++.+|+... ..+++ .
T Consensus 85 ~i~~~l~-----~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~-~~~~~~~~ 158 (215)
T 1nn5_A 85 LIKEKLS-----QGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFG-HERYENGA 158 (215)
T ss_dssp HHHHHHH-----TTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC------CTTCSHH
T ss_pred HHHHHHH-----CCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccC-ccccchHH
Confidence 1222222 34678889432 1110 02223222 35899999999999999998421 11111 1
Q ss_pred HHHhchhHHHHHHh--cCcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 210 YAELGKPLEDYYQK--QKKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 210 y~~~~~~l~~~y~~--~~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
+.+........+.. ...++.||++.++++++++|.+.+...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~~~~~i~~~l~~~ 201 (215)
T 1nn5_A 159 FQERALRCFHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDA 201 (215)
T ss_dssp HHHHHHHHHHHHTTCTTSCEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence 22221111111111 135788999999999999999998753
No 39
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.61 E-value=2.8e-14 Score=123.46 Aligned_cols=169 Identities=12% Similarity=0.112 Sum_probs=104.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC---CCccchhHHHHHhcCCCChhHHHHHHHHhccc---cchHHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE---VPRISMSSIVRQDLSPRSSLHKQIANAVNRGE---VVSEDIIFGLLSKR 149 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g---~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~---~ip~~~~~~ll~~~ 149 (277)
++++.|+|.|++||||||+++.|+++++ +.++.+ + .+.++++|+.+++++.++. +.+.....-...++
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~----~--~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R 77 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT----R--EPGGTPLAERIRELLLAPSDEPMAADTELLLMFAAR 77 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE----E--SSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc----c--CCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999999999885 444433 2 2467899999999998774 22322211111122
Q ss_pred HHcC------CccCccEEEEcCccC------------CHHHHHHHHh----hcCcCEEEEecCCHHHHHHhhcch-----
Q 023790 150 LEDG------YYRGEIGFILDGLPR------------SRIQAEILDQ----LAEIDLVVNFKCADNFIVTNRGGS----- 202 (277)
Q Consensus 150 l~~~------~~~~~~g~IldGfPr------------t~~qae~l~~----~~~~d~vI~L~~~~e~l~~Rl~~~----- 202 (277)
.++. ....+..+|.|.|.. ...+...++. ...||++|+|++|++++.+|+..+
T Consensus 78 ~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~dr 157 (213)
T 4edh_A 78 AQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDR 157 (213)
T ss_dssp HHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSCCT
T ss_pred HHHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcCc
Confidence 1110 011345677775422 1233334443 257999999999999999998432
Q ss_pred HHHHHHHHHHhchh-HHHHHHh-cCcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 203 LKEKLEAYAELGKP-LEDYYQK-QKKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 203 ~~~rl~~y~~~~~~-l~~~y~~-~~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
++..-..|.+.... .....+. .+.++.||+++++++|.++|.+.+...
T Consensus 158 ~E~~~~~~~~rv~~~y~~l~~~~~~~~~vIDa~~s~eeV~~~I~~~l~~~ 207 (213)
T 4edh_A 158 FEQEDRRFFEAVRQTYLQRAAQAPERYQVLDAGLPLAEVQAGLDRLLPNL 207 (213)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 22110122222111 1111111 346999999999999999999998753
No 40
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.61 E-value=6.9e-15 Score=129.27 Aligned_cols=168 Identities=12% Similarity=0.073 Sum_probs=104.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhcc----ccchHHHH---------
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG----EVVSEDII--------- 142 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G----~~ip~~~~--------- 142 (277)
++++.|+|.|++||||||+++.|+++++...++...+.++ +.++++|+.+++++..+ .+-+....
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~ 102 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTRE--PGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQ 102 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecC--CCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHH
Confidence 5788999999999999999999999986555542223332 46789999999998632 22232111
Q ss_pred --HHHHHHHHHcCCccCccEEEEcCcc----------CC--HHHHHHHHh----hcCcCEEEEecCCHHHHHHhhcch--
Q 023790 143 --FGLLSKRLEDGYYRGEIGFILDGLP----------RS--RIQAEILDQ----LAEIDLVVNFKCADNFIVTNRGGS-- 202 (277)
Q Consensus 143 --~~ll~~~l~~~~~~~~~g~IldGfP----------rt--~~qae~l~~----~~~~d~vI~L~~~~e~l~~Rl~~~-- 202 (277)
.+.+...+. .+..+|.|.|. +. ......++. ...||++|+|++|++++.+|+..+
T Consensus 103 ~~~~~I~paL~-----~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~ 177 (236)
T 3lv8_A 103 LVENVIKPALA-----RGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGE 177 (236)
T ss_dssp HHHHTHHHHHH-----TTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----C
T ss_pred HHHHHHHHHHH-----cCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 112222232 34567777442 21 222333333 247999999999999999998432
Q ss_pred ---HHHHHHHHHHhch-hHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 203 ---LKEKLEAYAELGK-PLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 203 ---~~~rl~~y~~~~~-~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
++..-..|.+... ...++.+....+++||+++++++|.++|.+++...
T Consensus 178 ~dr~E~~~~~~~~rv~~~y~~la~~~~~~~vIDa~~sieeV~~~I~~~l~~~ 229 (236)
T 3lv8_A 178 LDRIEKMDISFFERARERYLELANSDDSVVMIDAAQSIEQVTADIRRALQDW 229 (236)
T ss_dssp CCTTTTSCHHHHHHHHHHHHHHHHHCTTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 2211112322222 22333333334899999999999999999999764
No 41
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.60 E-value=6.6e-15 Score=122.78 Aligned_cols=160 Identities=10% Similarity=0.078 Sum_probs=91.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC-----CCccchhHHHHHhcCC-CC--hhHHHHHHHHhccccch--HHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQDLSP-RS--SLHKQIANAVNRGEVVS--EDIIFGLL 146 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g-----~~~Is~~dllr~~~~~-~~--~lg~~i~~~l~~G~~ip--~~~~~~ll 146 (277)
+++.|+|+|+|||||||+|+.|+++++ +.++++++++++.... +. +.. + -+...+ .......+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~ 74 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRD----Q---MRKMDPETQKRIQKMA 74 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGG----G---GSSCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCCCHH----H---HhcCCHHHHHHHHHHH
Confidence 357899999999999999999999998 9999999998875321 10 000 0 011111 11122222
Q ss_pred HHHHHcCCccCccEEEEcCccCCHHHH--------HHHHhhcCcCEEEEecCCHHHHHH-hhcc--hH-----HHHHH--
Q 023790 147 SKRLEDGYYRGEIGFILDGLPRSRIQA--------EILDQLAEIDLVVNFKCADNFIVT-NRGG--SL-----KEKLE-- 208 (277)
Q Consensus 147 ~~~l~~~~~~~~~g~IldGfPrt~~qa--------e~l~~~~~~d~vI~L~~~~e~l~~-Rl~~--~~-----~~rl~-- 208 (277)
.+.+... ..+.++|+||.+....++ ..+... .++++|+|++|++++.+ |+.+ +- .+.+.
T Consensus 75 ~~~i~~~--~~~~~viid~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~~~~~~rRl~~~~R~r~~~~~~~~~~~ 151 (192)
T 1kht_A 75 GRKIAEM--AKESPVAVDTHSTVSTPKGYLPGLPSWVLNEL-NPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQH 151 (192)
T ss_dssp HHHHHHH--HTTSCEEEECCSEEEETTEEEESSCHHHHHHH-CCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHHHHHHH
T ss_pred HHHHHhh--ccCCeEEEccceeccccccccccCcHHHHhcc-CCCEEEEEeCCHHHHHHHHhhhcccCCCcCCHHHHHHH
Confidence 2223221 124579999975421100 122222 47899999999999996 8743 20 11111
Q ss_pred -HHHHhchhHHHHHHhcCcEEEE-eCCCCHHHHHHHHHHHH
Q 023790 209 -AYAELGKPLEDYYQKQKKLLEF-QVGSAPLETWQGLLTAL 247 (277)
Q Consensus 209 -~y~~~~~~l~~~y~~~~~li~I-da~~s~eev~~~I~~~L 247 (277)
..+.........|.. ..++.+ +.+.++++++++|.+.+
T Consensus 152 ~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~e~~~~~i~~~i 191 (192)
T 1kht_A 152 QFMNRCAAMSYGVLTG-ATVKIVQNRNGLLDQAVEELTNVL 191 (192)
T ss_dssp HHHHHHHHHHHHHHHC-CEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-CcEEEEeCCCCCHHHHHHHHHHHh
Confidence 112222222233322 234455 44566999999998876
No 42
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.60 E-value=4.3e-15 Score=122.78 Aligned_cols=157 Identities=13% Similarity=0.042 Sum_probs=84.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH-HhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCcc
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSK-LLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~-~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (277)
++.|+|+|+|||||||+|+.|++ .+|+.+++++ .+++.....+. +. ...+...++....+++...+...+... .
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d-~~r~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~--~ 76 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYRQSIMAHEE-RD-EYKYTKKKEGIVTGMQFDTAKSILYGG--D 76 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHHHHHTTSCC-GG-GCCCCHHHHHHHHHHHHHHHHHHHTSC--S
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHH-HHHHHhhCCCc-cc-hhhhchhhhhHHHHHHHHHHHHHHhhc--c
Confidence 56899999999999999999999 6899999985 55554432111 00 000000111112334445555555321 2
Q ss_pred CccEEEEcCccCCHHHHHHHHhh----cCcCEEEEecCCHHHHHHhhcc---------hHHHHHHHHHHhchhHHHHHHh
Q 023790 157 GEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNRGG---------SLKEKLEAYAELGKPLEDYYQK 223 (277)
Q Consensus 157 ~~~g~IldGfPrt~~qae~l~~~----~~~d~vI~L~~~~e~l~~Rl~~---------~~~~rl~~y~~~~~~l~~~y~~ 223 (277)
.+.++|+||++.+..+.+.+.+. ..+..+|+|+||.+++.+|+.. .++++++.|+... .
T Consensus 77 ~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~i~~~~~~~~~~~--------~ 148 (181)
T 1ly1_A 77 SVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYL--------G 148 (181)
T ss_dssp SCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGGCCCHHHHHHHHHHHHHHH--------T
T ss_pred CCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccccCCCCHHHHHHHHHHhhccC--------C
Confidence 46789999999887776666532 2244799999999999999843 2344444444331 1
Q ss_pred cCcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 224 QKKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 224 ~~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
.+. +.+|++. ++++..+|...+..
T Consensus 149 ~~~-~~id~~~-~~~v~~~i~~~l~~ 172 (181)
T 1ly1_A 149 LPV-YNGTPGK-PKAVIFDVDGTLAK 172 (181)
T ss_dssp CCC-C---------------------
T ss_pred CCc-cccCCCC-Cceeeehhhhhhhc
Confidence 111 2367665 47888888777654
No 43
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.60 E-value=6.5e-15 Score=121.30 Aligned_cols=152 Identities=14% Similarity=0.136 Sum_probs=91.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHh-ccccchHHHHHHHHHHHHHcCCc
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYY 155 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~ 155 (277)
.+.+|+|+|+|||||||+|+.|++++|++++++|+++++... .+ +.+.+. .|.....+...+++......
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g--~~----~~~~~~~~g~~~~~~~~~~~l~~~~~~--- 76 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVG--LS----VREIFEELGEDNFRMFEKNLIDELKTL--- 76 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHT--SC----HHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhC--CC----HHHHHHHhCHHHHHHHHHHHHHHHHhc---
Confidence 567899999999999999999999999999999999887642 22 333333 24433334334444443221
Q ss_pred cCccEEEEc-C--ccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcchH-HHH-----HHHHHHhchhHHHHHHhcCc
Q 023790 156 RGEIGFILD-G--LPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSL-KEK-----LEAYAELGKPLEDYYQKQKK 226 (277)
Q Consensus 156 ~~~~g~Ild-G--fPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~~-~~r-----l~~y~~~~~~l~~~y~~~~~ 226 (277)
....|+. | ++.. .. +..++.+|+|++|++++.+|+..+. ..| .+.+++......++|....
T Consensus 77 --~~~~Vi~~g~g~~~~-~~------l~~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~~~~~~~r~~~~~~~a- 146 (168)
T 1zuh_A 77 --KTPHVISTGGGIVMH-EN------LKGLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEKRQALYEKNA- 146 (168)
T ss_dssp --SSCCEEECCGGGGGC-GG------GTTSEEEEEEECCHHHHHHHHCC--------CCTTHHHHHHHHHHHHHHHHTC-
T ss_pred --CCCEEEECCCCEech-hH------HhcCCEEEEEECCHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHHHHHHHC-
Confidence 2220443 3 4433 11 2347899999999999999985431 000 1122222222334454422
Q ss_pred EEEEeCCCCHHHHHHHHHHHH
Q 023790 227 LLEFQVGSAPLETWQGLLTAL 247 (277)
Q Consensus 227 li~Ida~~s~eev~~~I~~~L 247 (277)
.+.||++.++++++++|.+.+
T Consensus 147 ~~~Id~~~~~e~~~~~I~~~l 167 (168)
T 1zuh_A 147 SFIIDARGGLNNSLKQVLQFI 167 (168)
T ss_dssp SEEEEGGGCHHHHHHHHHHC-
T ss_pred CEEEECCCCHHHHHHHHHHHh
Confidence 245676669999999998765
No 44
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.60 E-value=4e-14 Score=120.94 Aligned_cols=163 Identities=13% Similarity=0.162 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh---CCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHH------HH
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLS------KR 149 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~---g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~------~~ 149 (277)
|.|+|.|+.||||||+++.|++++ |..++-+ ..+.+++.++.+++.+..+...|.....-... ..
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t------reP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~ 74 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK------REPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE------ESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE------ECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999987 5555533 23567888888988887766555432211111 11
Q ss_pred HHcCCccCccEEEEcCccCC------------HHHHHHHHhh----cCcCEEEEecCCHHHHHHhhcc--hHHHHHHHHH
Q 023790 150 LEDGYYRGEIGFILDGLPRS------------RIQAEILDQL----AEIDLVVNFKCADNFIVTNRGG--SLKEKLEAYA 211 (277)
Q Consensus 150 l~~~~~~~~~g~IldGfPrt------------~~qae~l~~~----~~~d~vI~L~~~~e~l~~Rl~~--~~~~rl~~y~ 211 (277)
+... ...+..+|.|.|..+ ......+... ..||++|+|++|++++.+|..+ +++.+ .|.
T Consensus 75 I~~~-L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~dr~e~~--ef~ 151 (197)
T 3hjn_A 75 IKQY-LSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRFEKR--EFL 151 (197)
T ss_dssp HHHH-HTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CTTCCH--HHH
T ss_pred HHHH-HHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcCccccH--HHH
Confidence 1111 123455677765322 1122223222 4799999999999999999732 22111 222
Q ss_pred Hhchh-HHHHHHh-cCcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 212 ELGKP-LEDYYQK-QKKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 212 ~~~~~-l~~~y~~-~~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
+.+.. .....+. .++++.|||++++++|.++|.+.++++
T Consensus 152 ~rv~~~y~~la~~~~~~~~~IDa~~~~eeV~~~I~~~i~~r 192 (197)
T 3hjn_A 152 ERVREGYLVLAREHPERIVVLDGKRSIEEIHRDVVREVKRR 192 (197)
T ss_dssp HHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 22211 1122222 346899999999999999999999764
No 45
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.59 E-value=3.6e-15 Score=123.78 Aligned_cols=155 Identities=10% Similarity=0.090 Sum_probs=96.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHh-ccccchHHHHHHHHHHHHHcCCcc
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYYR 156 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~~ 156 (277)
+++|+|+|+|||||||+|+.|++++|++++++|+++++... .+ +.+.+. .|.....+....++.. +..
T Consensus 4 m~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g--~~----~~~~~~~~g~~~~~~~~~~~~~~-l~~---- 72 (175)
T 1via_A 4 AKNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN--QK----VSEIFEQKRENFFREQEQKMADF-FSS---- 72 (175)
T ss_dssp -CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHT--SC----HHHHHHHHCHHHHHHHHHHHHHH-HTT----
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcC--CC----HHHHHHHcCHHHHHHHHHHHHHH-HHc----
Confidence 34799999999999999999999999999999999876532 12 222222 2333333333334432 322
Q ss_pred CccEEEEc-CccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcchH-HHH-----HHHHHHhchhHHHHHHhcCcEEE
Q 023790 157 GEIGFILD-GLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSL-KEK-----LEAYAELGKPLEDYYQKQKKLLE 229 (277)
Q Consensus 157 ~~~g~Ild-GfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~~-~~r-----l~~y~~~~~~l~~~y~~~~~li~ 229 (277)
...+|++ |.+.... .. | ...+.+|+|++|.+++.+|+..+. ..| .+.+.+......++|.... .+.
T Consensus 73 -~~~~vi~~g~~~~~~-~~-l---~~~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~~~~i~~~~~~r~~~y~~~~-~~~ 145 (175)
T 1via_A 73 -CEKACIATGGGFVNV-SN-L---EKAGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKYEQKA-NFI 145 (175)
T ss_dssp -CCSEEEECCTTGGGS-TT-G---GGGCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHHHHHHHHHC-SEE
T ss_pred -cCCEEEECCCCEehh-hH-H---hcCCEEEEEeCCHHHHHHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHhcC-CEE
Confidence 2345555 6432221 11 2 235789999999999999985431 001 2223333333445564322 367
Q ss_pred EeCC-CCHHHHHHHHHHHHHHc
Q 023790 230 FQVG-SAPLETWQGLLTALHLQ 250 (277)
Q Consensus 230 Ida~-~s~eev~~~I~~~L~~~ 250 (277)
||++ .++++++++|.+.+..-
T Consensus 146 Idt~~~~~eev~~~I~~~l~~~ 167 (175)
T 1via_A 146 LNIENKNIDELLSEIKKVIKEG 167 (175)
T ss_dssp EECTTCCHHHHHHHHHHHHC--
T ss_pred EECCCCCHHHHHHHHHHHHHhc
Confidence 7887 79999999999988653
No 46
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.58 E-value=5.1e-14 Score=117.42 Aligned_cols=159 Identities=13% Similarity=0.118 Sum_probs=97.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHh-ccccchHHHHHHHHHHHHHcCCc
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYY 155 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~ 155 (277)
.++.|+|+|+|||||||+|+.|++++|++++++|+++++... .+. .+.+. .|+....+...+++......
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g--~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~--- 74 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTG--ADI----AWIFEMEGEAGFRRREREMIEALCKL--- 74 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHT--SCH----HHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC--CCh----hhHHHHhCHHHHHHHHHHHHHHHHhc---
Confidence 456899999999999999999999999999999998876532 222 22222 23222333444444443222
Q ss_pred cCccEEEEcC--ccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhh--cch-----H--HHHHHHHHHhchhHHHHHHhc
Q 023790 156 RGEIGFILDG--LPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR--GGS-----L--KEKLEAYAELGKPLEDYYQKQ 224 (277)
Q Consensus 156 ~~~~g~IldG--fPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl--~~~-----~--~~rl~~y~~~~~~l~~~y~~~ 224 (277)
...+|..| .+......+.+.. .+.+|+|++|.+++.+|+ ... . ....+.++........+|+..
T Consensus 75 --~~~vi~~gg~~~~~~~~~~~l~~---~~~vi~L~~~~e~l~~Rl~~~~~~~rp~~~~~~~~~~l~~~~~~r~~~y~~~ 149 (185)
T 3trf_A 75 --DNIILATGGGVVLDEKNRQQISE---TGVVIYLTASIDTQLKRIGQKGEMRRPLFIKNNSKEKLQQLNEIRKPLYQAM 149 (185)
T ss_dssp --SSCEEECCTTGGGSHHHHHHHHH---HEEEEEEECCHHHHHHHHHCCTTCSSCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCcEEecCCceecCHHHHHHHHh---CCcEEEEECCHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 23344444 3444444444443 358999999999999999 321 0 111222333333334455442
Q ss_pred CcEEEEeCCC-CHHHHHHHHHHHHHHc
Q 023790 225 KKLLEFQVGS-APLETWQGLLTALHLQ 250 (277)
Q Consensus 225 ~~li~Ida~~-s~eev~~~I~~~L~~~ 250 (277)
.. +.||++. ++++++++|.+.+...
T Consensus 150 ad-~~Idt~~~~~~e~~~~I~~~l~~~ 175 (185)
T 3trf_A 150 AD-LVYPTDDLNPRQLATQILVDIKQT 175 (185)
T ss_dssp CS-EEEECTTCCHHHHHHHHHHHSCC-
T ss_pred CC-EEEECCCCCHHHHHHHHHHHHHHH
Confidence 22 4567654 8999999999988654
No 47
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.58 E-value=5.6e-15 Score=123.62 Aligned_cols=117 Identities=12% Similarity=0.146 Sum_probs=71.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCC--CChhHHHHHHHHhccccchHHHHHHHHHHHHHcC
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP--RSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDG 153 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~--~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~ 153 (277)
.+++.|+|+|+|||||||+++.|++++|+.+++.|++....... .... ..... +.. . --+.+...+...+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~-~~~~~-~~~--~-~~~~~~~~~~~~l~-- 75 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDR-EWSRR-VGA--T-AIMMLYHTAATILQ-- 75 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSH-HHHHH-HHH--H-HHHHHHHHHHHHHH--
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccch-HHHHH-hhH--H-HHHHHHHHHHHHHh--
Confidence 46789999999999999999999999999999997664332110 0000 00000 000 0 00111222333333
Q ss_pred CccCccEEEEcCccCCHHHHHHH---Hhh-cCcCEEEEecCCHHHHHHhhcch
Q 023790 154 YYRGEIGFILDGLPRSRIQAEIL---DQL-AEIDLVVNFKCADNFIVTNRGGS 202 (277)
Q Consensus 154 ~~~~~~g~IldGfPrt~~qae~l---~~~-~~~d~vI~L~~~~e~l~~Rl~~~ 202 (277)
.+.++|+|+++....+.+.+ ... ..++++|+|++|++++.+|+..+
T Consensus 76 ---~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R 125 (193)
T 2rhm_A 76 ---SGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSR 125 (193)
T ss_dssp ---TTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHH
T ss_pred ---CCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHh
Confidence 35689999987322222223 221 35679999999999999998543
No 48
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.57 E-value=2.9e-14 Score=122.32 Aligned_cols=161 Identities=14% Similarity=0.105 Sum_probs=97.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhc------cccchH-----------
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR------GEVVSE----------- 139 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~------G~~ip~----------- 139 (277)
++++|+|+|++||||||+++.|++ +|++++++|+++++...++......+.+.+.. |.....
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~ 81 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE 81 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence 568999999999999999999998 99999999999988765555444555544321 111111
Q ss_pred ------HHHHHHHHHH----HHcCCccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcchH---HHH
Q 023790 140 ------DIIFGLLSKR----LEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSL---KEK 206 (277)
Q Consensus 140 ------~~~~~ll~~~----l~~~~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~~---~~r 206 (277)
.++...+... +... .+..+|++ .|...+.. +. ..+|.+|+|++|++++.+|+..+- .+.
T Consensus 82 ~~~~l~~~~~p~v~~~~~~~~~~~---~~~~vi~~-~~~l~~~~--~~--~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~ 153 (218)
T 1vht_A 82 EKNWLNALLHPLIQQETQHQIQQA---TSPYVLWV-VPLLVENS--LY--KKANRVLVVDVSPETQLKRTMQRDDVTREH 153 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC---CSSEEEEE-CTTTTTTT--GG--GGCSEEEEEECCHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHhHCHHHHHHHHHHHHhc---CCCEEEEE-eeeeeccC--cc--ccCCEEEEEECCHHHHHHHHHHcCCCCHHH
Confidence 1111222111 1111 12334444 45433221 21 247899999999999999984321 111
Q ss_pred H-HHHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 207 L-EAYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 207 l-~~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
+ +.+..+ .+...++...+ +.||++.+++++.++|.+++..
T Consensus 154 ~~~~~~~~-~~~~~~~~~ad--~vId~~~~~~~~~~~I~~~l~~ 194 (218)
T 1vht_A 154 VEQILAAQ-ATREARLAVAD--DVIDNNGAPDAIASDVARLHAH 194 (218)
T ss_dssp HHHHHHHS-CCHHHHHHHCS--EEEECSSCTTSHHHHHHHHHHH
T ss_pred HHHHHHhc-CChHHHHHhCC--EEEECCCCHHHHHHHHHHHHHH
Confidence 1 122222 23333333333 4678777999999999998865
No 49
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.57 E-value=7.7e-14 Score=118.54 Aligned_cols=157 Identities=11% Similarity=0.120 Sum_probs=97.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhcccc-----ch--------------
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEV-----VS-------------- 138 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~-----ip-------------- 138 (277)
+++|.|+|++||||||+++.|++ +|++++++|++.++...++......+.+.+..... +.
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~ 80 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDED 80 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHH
Confidence 35799999999999999999998 99999999999887654444333333332221110 00
Q ss_pred ----HHHHHHHHHH----HHHcCCccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcch-------H
Q 023790 139 ----EDIIFGLLSK----RLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS-------L 203 (277)
Q Consensus 139 ----~~~~~~ll~~----~l~~~~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~-------~ 203 (277)
+.+....+.. .+... .+.++|+|+ |...+. . +. ..+|.+|+|++|++++.+|+..+ +
T Consensus 81 ~~~l~~~~~p~v~~~~~~~~~~~---~~~~vv~~~-~~l~e~-~-~~--~~~d~vi~l~~~~e~~~~Rl~~R~~~~~e~~ 152 (206)
T 1jjv_A 81 KLWLNNLLHPAIRERMKQKLAEQ---TAPYTLFVV-PLLIEN-K-LT--ALCDRILVVDVSPQTQLARSAQRDNNNFEQI 152 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC---CSSEEEEEC-TTTTTT-T-CG--GGCSEEEEEECCHHHHHHHHC-----CHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHhc---CCCEEEEEe-chhhhc-C-cH--hhCCEEEEEECCHHHHHHHHHHcCCCCHHHH
Confidence 1111222222 22221 245788887 432211 1 11 24689999999999999999433 2
Q ss_pred HHHHHHHHHhchhHHHHHHhcCcEEEEeCCCCHH----HHHHHHHHHHHH
Q 023790 204 KEKLEAYAELGKPLEDYYQKQKKLLEFQVGSAPL----ETWQGLLTALHL 249 (277)
Q Consensus 204 ~~rl~~y~~~~~~l~~~y~~~~~li~Ida~~s~e----ev~~~I~~~L~~ 249 (277)
.+|+ ..+ .+..+.|...+ +.||++.+++ ++.++|.+.+..
T Consensus 153 ~~r~---~~q-~~~~~~~~~ad--~vIdn~~~~~~~~~~~~~~i~~~~~~ 196 (206)
T 1jjv_A 153 QRIM---NSQ-VSQQERLKWAD--DVINNDAELAQNLPHLQQKVLELHQF 196 (206)
T ss_dssp HHHH---HHS-CCHHHHHHHCS--EEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHH---Hhc-CChHHHHHhCC--EEEECCCCccccHHHHHHHHHHHHHH
Confidence 2333 222 24555565444 4577777999 999999988864
No 50
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.57 E-value=1.9e-14 Score=120.74 Aligned_cols=154 Identities=12% Similarity=0.196 Sum_probs=93.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH-hCCCccchhHHHHHhcCCCChhHHHHHHHHhccccc---hHHHHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL-LEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVV---SEDIIFGLLSKRLE 151 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~-~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~i---p~~~~~~ll~~~l~ 151 (277)
.++++|+|+|+|||||||+|+.|++. +|++++++|+++++..- ....++. +.. ..+ +++...+.+...+.
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~~-~~~~~~~----~~~-~~~~r~~~~~~~~~l~~~~~ 81 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHF-YTEYDTE----LDT-HIIEEKDEDRLLDFMEPIMV 81 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTC-SCC----------C-CCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhhh-hhhHHHH----hhh-cccCCCCHHHHHHHHHHHHh
Confidence 56789999999999999999999999 89999999999987411 1122221 111 122 33334444444332
Q ss_pred cCCccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcch------HHHHHH-H-HHHhchhHHHHHHh
Q 023790 152 DGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS------LKEKLE-A-YAELGKPLEDYYQK 223 (277)
Q Consensus 152 ~~~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~------~~~rl~-~-y~~~~~~l~~~y~~ 223 (277)
. ..++|+|+.... .|.. ..++.+|+|++|.+++.+|+..+ +..++. + +..........|..
T Consensus 82 ~-----~g~~vi~~~~~~-----~~~~-~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~q~~~~l~~~~~~~y~~ 150 (184)
T 1y63_A 82 S-----RGNHVVDYHSSE-----LFPE-RWFHMVVVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCICEEEARDAYED 150 (184)
T ss_dssp S-----SSEEEEECSCCT-----TSCG-GGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSCG
T ss_pred c-----cCCEEEeCchHh-----hhhh-ccCCEEEEEECCHHHHHHHHHhCCCChhhhHhhHHHHHHHHHHHHHHHHhcc
Confidence 2 357888865321 1221 13689999999999999999433 122221 1 22222333455642
Q ss_pred cCcEEEEeCCCCHHHHHHHHHHHHH
Q 023790 224 QKKLLEFQVGSAPLETWQGLLTALH 248 (277)
Q Consensus 224 ~~~li~Ida~~s~eev~~~I~~~L~ 248 (277)
+.++.+| +.+++++.+++.+++.
T Consensus 151 -~~vi~~n-~~~~~~~~~~v~~i~~ 173 (184)
T 1y63_A 151 -DIVLVRE-NDTLEQMAATVEEIRE 173 (184)
T ss_dssp -GGEEEEE-CSSHHHHHHHHHHHHH
T ss_pred -CcEEECC-CCCHHHHHHHHHHHHH
Confidence 3455555 6799999665555543
No 51
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.57 E-value=5.3e-14 Score=115.33 Aligned_cols=144 Identities=17% Similarity=0.128 Sum_probs=88.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCccCc
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE 158 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~~~ 158 (277)
++|+|+|+|||||||+|+.|++++|+.+++.+.+...... +...+. .. ..+. .+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~--------~~~~~~------------~~-~~l~-----~~ 55 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSG--------NEKLFE------------HF-NKLA-----DE 55 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTTC--------HHHHHH------------HH-HHHT-----TC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchhH--------HHHHHH------------HH-HHHH-----hC
Confidence 5799999999999999999999999999999877654320 011110 00 0111 12
Q ss_pred cEEEEcCc--------------c-CCHHHHHHHHhh-cCcCEEEEecCCHHHHHHhhcchH-----HHHHHHHHHhchhH
Q 023790 159 IGFILDGL--------------P-RSRIQAEILDQL-AEIDLVVNFKCADNFIVTNRGGSL-----KEKLEAYAELGKPL 217 (277)
Q Consensus 159 ~g~IldGf--------------P-rt~~qae~l~~~-~~~d~vI~L~~~~e~l~~Rl~~~~-----~~rl~~y~~~~~~l 217 (277)
..+|.|.+ + ....+...+... ..++.+|+|++|++++.+|+..+- .+.++...+....+
T Consensus 56 ~~vi~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~r~~~~~~~~~~~~~~~~~~ 135 (173)
T 3kb2_A 56 DNVIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGDEYIEGKDIDSILELYREV 135 (173)
T ss_dssp CSEEEESCHHHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHH
T ss_pred CCeEEeeeecchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH
Confidence 23344411 1 122333444432 468999999999999999984320 11111112222223
Q ss_pred HHHHHhcCcEEEEeCC-CCHHHHHHHHHHHHHHc
Q 023790 218 EDYYQKQKKLLEFQVG-SAPLETWQGLLTALHLQ 250 (277)
Q Consensus 218 ~~~y~~~~~li~Ida~-~s~eev~~~I~~~L~~~ 250 (277)
.+.|. ...+.||++ .++++++++|.+.++..
T Consensus 136 ~~~~~--~~~~~id~~~~~~~ev~~~I~~~~~~~ 167 (173)
T 3kb2_A 136 MSNAG--LHTYSWDTGQWSSDEIAKDIIFLVELE 167 (173)
T ss_dssp HHTCS--SCEEEEETTTSCHHHHHHHHHHHHHHG
T ss_pred HhhcC--CCEEEEECCCCCHHHHHHHHHHHHhCC
Confidence 33332 357789987 59999999999998874
No 52
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.56 E-value=2.2e-14 Score=127.13 Aligned_cols=157 Identities=13% Similarity=0.096 Sum_probs=96.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH---hCCCcc--chhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKL---LEVPRI--SMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLE 151 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~---~g~~~I--s~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~ 151 (277)
+++.|+|+|+|||||||+|+.|+++ .|+.++ +.|+ +++.+....+ .++..........+...+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~-~~~~l~~~~~----------~~e~~~~~~~~~~i~~~l~ 71 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDL-IRESFPVWKE----------KYEEFIKKSTYRLIDSALK 71 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHH-HHTTSSSCCG----------GGHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchH-HHHHHhhhhH----------HHHHHHHHHHHHHHHHHhh
Confidence 5789999999999999999999998 788887 7654 4443322111 1111111222233333332
Q ss_pred cCCccCccEEEEcCccCCHHHHHHHHhh----cCcCEEEEecCCHHHHHHhhcchH----HHHHHHHHHhchhHHHHHHh
Q 023790 152 DGYYRGEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNRGGSL----KEKLEAYAELGKPLEDYYQK 223 (277)
Q Consensus 152 ~~~~~~~~g~IldGfPrt~~qae~l~~~----~~~d~vI~L~~~~e~l~~Rl~~~~----~~rl~~y~~~~~~l~~~y~~ 223 (277)
. ..+|+|+.+....+.+.+... ..++++|+|+||++++.+|+..+- .+.++...+........|.-
T Consensus 72 -----~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~l~~~~~~~e~~~~~~~~ 145 (260)
T 3a4m_A 72 -----N-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGEKIPNEVIKKMYEKFDEPGKKYKW 145 (260)
T ss_dssp -----T-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTCSSCHHHHHHHHHHCCCTTSSCGG
T ss_pred -----C-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCCCCCHHHHHHHHHHhcCccccCCC
Confidence 2 689999977666555555432 357899999999999999984321 11122111111111111211
Q ss_pred cCcEEEEeCCC--CHHHHHHHHHHHHHHc
Q 023790 224 QKKLLEFQVGS--APLETWQGLLTALHLQ 250 (277)
Q Consensus 224 ~~~li~Ida~~--s~eev~~~I~~~L~~~ 250 (277)
....++||++. +++++++.|.+.+...
T Consensus 146 ~~~~~~Id~~~~~~~~ei~~~I~~~l~~~ 174 (260)
T 3a4m_A 146 DEPFLIIDTTKDIDFNEIAKKLIEKSKEI 174 (260)
T ss_dssp GCCSEEEETTSCCCHHHHHHHHHHHHTSC
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHhcccCC
Confidence 12457788876 8999999999988754
No 53
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.55 E-value=1.2e-13 Score=114.56 Aligned_cols=154 Identities=8% Similarity=-0.052 Sum_probs=87.5
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCCcc-chhHHHHHhcCCCChhHHHHHHHHhccccc----h--HHHHHHHHH
Q 023790 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI-SMSSIVRQDLSPRSSLHKQIANAVNRGEVV----S--EDIIFGLLS 147 (277)
Q Consensus 75 ~~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~I-s~~dllr~~~~~~~~lg~~i~~~l~~G~~i----p--~~~~~~ll~ 147 (277)
|.+++.|+|+|+|||||||+|+.|++++|.+++ +.+ ..+..+++.+..|... . .+.+.+.+.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~-----------~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~i~ 70 (183)
T 2vli_A 2 PMRSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPE-----------EMGQALRKLTPGFSGDPQEHPMWIPLMLDALQ 70 (183)
T ss_dssp ---CCEEEEECCC----CHHHHHHHHHSTTCEECCTH-----------HHHHHHHHTSTTCCSCGGGSTTHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchh-----------hhHHHHHHhCccccchhhhhHHHHHHHHHHHH
Confidence 357889999999999999999999999999988 421 1222233322212110 0 123344555
Q ss_pred HHHHcCCccCccEEEEcCccCCHHHH----HHHHhhcCcCEEEEecCCHHHHHHhhcchH-----HHHHHHHHHhchhHH
Q 023790 148 KRLEDGYYRGEIGFILDGLPRSRIQA----EILDQLAEIDLVVNFKCADNFIVTNRGGSL-----KEKLEAYAELGKPLE 218 (277)
Q Consensus 148 ~~l~~~~~~~~~g~IldGfPrt~~qa----e~l~~~~~~d~vI~L~~~~e~l~~Rl~~~~-----~~rl~~y~~~~~~l~ 218 (277)
..+.. .+..+|+|+........ +.+.....+-.+|+|+||++++.+|+..+- .+.++.+.+...++
T Consensus 71 ~~l~~----~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r~~~~~~~~~~~~~~~~~- 145 (183)
T 2vli_A 71 YASRE----AAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQPQVNVGTVEDRLNELRGE- 145 (183)
T ss_dssp HHHHH----CSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC----CCHHHHHHHHHHHTSG-
T ss_pred HHHHh----CCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhccccchhHHHHHHHHHhhccc-
Confidence 54443 14557788655443222 222222122356999999999999985432 23333333333333
Q ss_pred HHHHhcCcEEEEeCC-CCHHHHHHHHHHHHHHc
Q 023790 219 DYYQKQKKLLEFQVG-SAPLETWQGLLTALHLQ 250 (277)
Q Consensus 219 ~~y~~~~~li~Ida~-~s~eev~~~I~~~L~~~ 250 (277)
. | . + .||++ .++++++++|.+.+...
T Consensus 146 ~-~---~-~-~Id~~~~~~~~~~~~I~~~l~~~ 172 (183)
T 2vli_A 146 Q-F---Q-T-HIDTAGLGTQQVAEQIAAQVGLT 172 (183)
T ss_dssp G-G---C-S-EEECTTCCHHHHHHHHHHHHTCC
T ss_pred c-c---c-e-EeeCCCCCHHHHHHHHHHHHHHh
Confidence 2 2 2 3 77886 89999999999998653
No 54
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.55 E-value=4.6e-14 Score=124.99 Aligned_cols=160 Identities=13% Similarity=0.127 Sum_probs=106.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHh-ccccchHHHHHHHHHHHHHcCCcc
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYYR 156 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~-~G~~ip~~~~~~ll~~~l~~~~~~ 156 (277)
+..|+|+|++||||||+++.|++.+|+.+++++++++.... +.. +.+.+. .|+....+...+.+.......
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~-g~~----i~~i~~~~ge~~fr~~e~~~l~~l~~~~--- 119 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMK-GTS----VAEIFEHFGESVFREKETEALKKLSLMY--- 119 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHST-TSC----HHHHHHHHCHHHHHHHHHHHHHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhc-Ccc----HHHHHHHhCcHHHHHHHHHHHHHHHhhc---
Confidence 67899999999999999999999999999999999887652 222 333333 355555555555555444331
Q ss_pred CccEEEEc--CccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcch------H-HH---------HHHHHHHhchhHH
Q 023790 157 GEIGFILD--GLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS------L-KE---------KLEAYAELGKPLE 218 (277)
Q Consensus 157 ~~~g~Ild--GfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~------~-~~---------rl~~y~~~~~~l~ 218 (277)
..++|.+ |.+......+.+. .+++|||++|.+++.+|+... + .. ..+.+........
T Consensus 120 -~~~Via~GgG~v~~~~~~~~l~----~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~ 194 (250)
T 3nwj_A 120 -HQVVVSTGGGAVIRPINWKYMH----KGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARG 194 (250)
T ss_dssp -SSEEEECCGGGGGSHHHHHHHT----TSEEEEEECCHHHHHHHHHC----------------CHHHHHHHHHHHHHHHH
T ss_pred -CCcEEecCCCeecCHHHHHHHh----CCcEEEEECCHHHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHHHHHHH
Confidence 2345544 4565555555553 379999999999999998431 1 10 1223344444445
Q ss_pred HHHHhcCcEEEE----------eC-CCCHHHHHHHHHHHHHHc
Q 023790 219 DYYQKQKKLLEF----------QV-GSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 219 ~~y~~~~~li~I----------da-~~s~eev~~~I~~~L~~~ 250 (277)
..|...+.++.+ |+ +.++++++++|.+.+...
T Consensus 195 ~lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~ 237 (250)
T 3nwj_A 195 EAYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSY 237 (250)
T ss_dssp HHHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHhhCCEEEEecccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence 567665555533 54 589999999999998764
No 55
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.54 E-value=3.5e-14 Score=122.06 Aligned_cols=163 Identities=16% Similarity=0.110 Sum_probs=95.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcC----CCChhH--HHHHHHH-----------------hcc
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS----PRSSLH--KQIANAV-----------------NRG 134 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~----~~~~lg--~~i~~~l-----------------~~G 134 (277)
+++|.|+|++||||||+++.|++.+|++++++|++++.... .+.++. ..+.+.. ..|
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 46899999999999999999999999999999999985421 122211 1111111 123
Q ss_pred ccchHHHHH-------------HHHHHHHHcC--CccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhh
Q 023790 135 EVVSEDIIF-------------GLLSKRLEDG--YYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR 199 (277)
Q Consensus 135 ~~ip~~~~~-------------~ll~~~l~~~--~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl 199 (277)
..+++.+.. +.+.+.+... .+..+.++|+||.... ++ .+..++++|+|+++.+++.+|.
T Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~--~~----~~~~~d~~i~l~~~~e~~~~R~ 158 (227)
T 1cke_A 85 EDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMG--TV----VFPDAPVKIFLDASSEERAHRR 158 (227)
T ss_dssp EECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCC--CC----CCTTCSEEEEEECCHHHHHHHH
T ss_pred eeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCcc--ce----EecCCCEEEEEeCCHHHHHHHH
Confidence 322222110 2333333211 0123578999997321 10 1235799999999999999995
Q ss_pred cchHHHH---------HHHHHH--------hchhHHHHHHhcCcEEEEeCC-CCHHHHHHHHHHHHHHc
Q 023790 200 GGSLKEK---------LEAYAE--------LGKPLEDYYQKQKKLLEFQVG-SAPLETWQGLLTALHLQ 250 (277)
Q Consensus 200 ~~~~~~r---------l~~y~~--------~~~~l~~~y~~~~~li~Ida~-~s~eev~~~I~~~L~~~ 250 (277)
...+.+| .+.+.+ ...|+ +. ....+.||++ .++++++++|.+.+...
T Consensus 159 ~~~l~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl---~~-~~~~~~Id~~~~~~~ev~~~I~~~l~~~ 223 (227)
T 1cke_A 159 MLQLQVKGFSVNFERLLAEIKERDDRDRNRAVAPL---VP-AADALVLDSTTLSIEQVIEKALQYARQK 223 (227)
T ss_dssp HHHHHHHTCCCCHHHHHHHHC-------------C---CC-CTTCEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCccCCHHHHHHHHHHHHHhhhhhcccCc---cC-CCCEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 3221111 111111 11111 11 1123678887 89999999999988653
No 56
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=99.51 E-value=4.1e-14 Score=122.76 Aligned_cols=168 Identities=13% Similarity=0.062 Sum_probs=104.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccc--cchHHHHHHHHHHHHHc-
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGE--VVSEDIIFGLLSKRLED- 152 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~--~ip~~~~~~ll~~~l~~- 152 (277)
.+++.|+|.|++||||||+++.|+++++... .+++ +...++++|+.+++++..+. +-+.....-...++.+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~~~----~~~~-ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~ 77 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQPNC----KLLK-FPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIV 77 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCSSE----EEEE-SSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccc----eEEE-ecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence 3688999999999999999999999998732 2233 22347899999999987654 22221111111122210
Q ss_pred ----CCccCccEEEEcCccCCHH--H---------HHHHHhh----cCcCEEEEe-cCCHHHHHHhhc---chHHHHHHH
Q 023790 153 ----GYYRGEIGFILDGLPRSRI--Q---------AEILDQL----AEIDLVVNF-KCADNFIVTNRG---GSLKEKLEA 209 (277)
Q Consensus 153 ----~~~~~~~g~IldGfPrt~~--q---------ae~l~~~----~~~d~vI~L-~~~~e~l~~Rl~---~~~~~rl~~ 209 (277)
.....+..+|.|.|..+.. | .+.+..+ ..||++|+| ++|++++.+|+. ++++. ..
T Consensus 78 ~~I~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~dr~E~--~~ 155 (216)
T 3tmk_A 78 DKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYET--VK 155 (216)
T ss_dssp HHHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSCCTTCC--HH
T ss_pred HHHHHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCcccccH--HH
Confidence 0012345677786543211 1 1223322 479999999 999999999973 22221 12
Q ss_pred HHHhchh-HHHHHH-----hcCcEEEEe-CCCCHHHHHHHHHHHHHHc
Q 023790 210 YAELGKP-LEDYYQ-----KQKKLLEFQ-VGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 210 y~~~~~~-l~~~y~-----~~~~li~Id-a~~s~eev~~~I~~~L~~~ 250 (277)
|.+.... ..++.. ..+.+++|| +++++++|.++|.+.+...
T Consensus 156 f~~rvr~~Y~~la~~~~~~~~~~~~vID~a~~s~eeV~~~I~~~i~~~ 203 (216)
T 3tmk_A 156 FQEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEPV 203 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCCEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 3322221 112222 235799999 8999999999999998864
No 57
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.51 E-value=5.7e-13 Score=119.57 Aligned_cols=167 Identities=11% Similarity=0.050 Sum_probs=103.3
Q ss_pred cCCCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccc-----cchH---------
Q 023790 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGE-----VVSE--------- 139 (277)
Q Consensus 74 ~~~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~-----~ip~--------- 139 (277)
.|.++++|+|+|+|||||||+|+.|+ .+|+++|++|++.++...++.+....+.+.+...- .+..
T Consensus 71 ~~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~ 149 (281)
T 2f6r_A 71 LPSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFG 149 (281)
T ss_dssp SCTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhC
Confidence 45678899999999999999999999 68999999999998877666555544444332110 0110
Q ss_pred ---------HHHHHHH----HHHHHcCCccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcch----
Q 023790 140 ---------DIIFGLL----SKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS---- 202 (277)
Q Consensus 140 ---------~~~~~ll----~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~---- 202 (277)
.++...+ .+.+..........+|+||..... . .+. ..+|.+|+|++|++++.+|+..+
T Consensus 150 ~~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~--~-~~~--~~~d~vI~l~a~~ev~~~Rl~~R~g~s 224 (281)
T 2f6r_A 150 NKKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLE--A-GWQ--SMVHEVWTVVIPETEAVRRIVERDGLS 224 (281)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTT--T-TGG--GGCSEEEEEECCHHHHHHHHHHHHCCC
T ss_pred CHHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhc--c-chH--HhCCEEEEEcCCHHHHHHHHHHcCCCC
Confidence 1111111 122221100123578999863211 1 111 24789999999999999998432
Q ss_pred HHHHHHHHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 203 LKEKLEAYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 203 ~~~rl~~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
.+.-.+.+..+ .+...++...+ +.||++.+++++.++|.+++..
T Consensus 225 ~e~~~~ri~~q-~~~~~~~~~AD--~vIdn~~s~eel~~~I~~~l~~ 268 (281)
T 2f6r_A 225 EAAAQSRLQSQ-MSGQQLVEQSN--VVLSTLWESHVTQSQVEKAWNL 268 (281)
T ss_dssp HHHHHHHHHTS-CCHHHHHHTCS--EEEECSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CChHhhHhhCC--EEEECCCCHHHHHHHHHHHHHH
Confidence 11112233333 23344443333 4577788999999999999875
No 58
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.51 E-value=1.3e-12 Score=108.04 Aligned_cols=154 Identities=8% Similarity=0.040 Sum_probs=92.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchH-------HHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSE-------DIIFGLLSK 148 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~-------~~~~~ll~~ 148 (277)
..+..|+|+|+|||||||+++.|++.+|..+++.+++.+.. .+... ..|..+.+ ..+...+..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~---------~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~ 75 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRR---------NIEKM-ASGEPLNDDDRKPWLQALNDAAFA 75 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHH---------HHHHH-HTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchH---------HHHHh-hcCcCCCccccccHHHHHHHHHHH
Confidence 35678999999999999999999999999999988764210 00000 01111111 111122222
Q ss_pred HHHcCCccCccEEEEc-CccCCHHHHHHHHhhcCcC-EEEEecCCHHHHHHhhcchH-----HHHHHHHHHhchhHHHHH
Q 023790 149 RLEDGYYRGEIGFILD-GLPRSRIQAEILDQLAEID-LVVNFKCADNFIVTNRGGSL-----KEKLEAYAELGKPLEDYY 221 (277)
Q Consensus 149 ~l~~~~~~~~~g~Ild-GfPrt~~qae~l~~~~~~d-~vI~L~~~~e~l~~Rl~~~~-----~~rl~~y~~~~~~l~~~y 221 (277)
.+.. +.++|+| |++. ..+.+.+.+. .++ .+|+|+||++++.+|+..+- ...++.......+. +|
T Consensus 76 ~~~~-----~~~~vi~~~~~~-~~~~~~l~~~-~~~~~vv~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~--~~ 146 (175)
T 1knq_A 76 MQRT-----NKVSLIVCSALK-KHYRDLLREG-NPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEP--GA 146 (175)
T ss_dssp HHHH-----CSEEEEECCCCS-HHHHHHHHTT-CTTEEEEEEECCHHHHHHHHHTSTTCCCCHHHHHHHHHHCCCC--CT
T ss_pred HHhc-----CCcEEEEeCchH-HHHHHHHHhc-CCCEEEEEEECCHHHHHHHHHhccCCCCchHHHHHHHHhhhCc--cc
Confidence 2221 3578887 5543 3334445432 245 79999999999999984321 22222111111111 13
Q ss_pred HhcCcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 222 QKQKKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 222 ~~~~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
.+ ...+.||++.+++++.++|.+.+..
T Consensus 147 ~~-~~~~~Id~~~~~~~~~~~i~~~l~~ 173 (175)
T 1knq_A 147 DE-TDVLVVDIDQPLEGVVASTIEVIKK 173 (175)
T ss_dssp TC-TTEEEEECSSCHHHHHHHHHHHHHC
T ss_pred CC-CCeEEEeCCCCHHHHHHHHHHHHhc
Confidence 22 2467889889999999999998753
No 59
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.51 E-value=7.8e-13 Score=111.23 Aligned_cols=161 Identities=9% Similarity=0.024 Sum_probs=88.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCC-ccC
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY-YRG 157 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~-~~~ 157 (277)
++|+|+|+|||||||+++.|+++++..++.... .+..+ +..+...+...+.......+..++.... ...
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~-------~~~~~---~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 70 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPV-------EENPY---FEQYYKDLKKTVFKMQIYMLTARSKQLKQAKN 70 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEECCCG-------GGCTT---HHHHTTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCcEEcccc-------cccHH---HHHHHhCccccchhHHHHHHHHHHHHHHHhhc
Confidence 479999999999999999999999987654210 00011 1111111111111111122222222110 011
Q ss_pred ccEEEEcCccCCHH--HH-----------------HHHH----hh-------cCcCEEEEecCCHHHHHHhhcch---HH
Q 023790 158 EIGFILDGLPRSRI--QA-----------------EILD----QL-------AEIDLVVNFKCADNFIVTNRGGS---LK 204 (277)
Q Consensus 158 ~~g~IldGfPrt~~--qa-----------------e~l~----~~-------~~~d~vI~L~~~~e~l~~Rl~~~---~~ 204 (277)
...+|+|+++.+.. +. +.++ .+ ..++.+|+|++|++++.+|+.++ ..
T Consensus 71 ~~~vi~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~r~~~ 150 (205)
T 2jaq_A 71 LENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRGRSEE 150 (205)
T ss_dssp --CEEEESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHTCHHH
T ss_pred cCCEEEEeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcCChhh
Confidence 23489998876421 10 0111 11 35789999999999999998432 11
Q ss_pred H-----HHHHHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 205 E-----KLEAYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 205 ~-----rl~~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
. ..+........+.+.|......++||++.++++++++|.+.+..
T Consensus 151 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~~~~~v~~~I~~~l~~ 200 (205)
T 2jaq_A 151 LLIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAELDVKTQIELIMNKLNS 200 (205)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHccccCcEEEEECCCCHHHHHHHHHHHHHH
Confidence 0 11111222223344454234578899989999999999999865
No 60
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.50 E-value=2.8e-13 Score=114.77 Aligned_cols=165 Identities=11% Similarity=0.091 Sum_probs=98.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhc------cccch--------------
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR------GEVVS-------------- 138 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~------G~~ip-------------- 138 (277)
++|.|+|++||||||+++.|++ +|++++++|+++++....+......+.+.+.. |...-
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 80 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL 80 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence 5799999999999999999999 99999999999987765544444444433321 11110
Q ss_pred ---HHHHHHHH----HHHHHcCCccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcchH---HHHHH
Q 023790 139 ---EDIIFGLL----SKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSL---KEKLE 208 (277)
Q Consensus 139 ---~~~~~~ll----~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~~---~~rl~ 208 (277)
..+....+ ...+... .....+|+||. ...+ ..+. ..++.+|+|++|++++.+|+..+- +.-.+
T Consensus 81 ~~l~~l~~~~v~~~~~~~~~~~--~~~~~vive~~-~l~~--~~~~--~~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~ 153 (204)
T 2if2_A 81 RKLEEITHRALYKEIEKITKNL--SEDTLFILEAS-LLVE--KGTY--KNYDKLIVVYAPYEVCKERAIKRGMSEEDFER 153 (204)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHS--CTTCCEEEECS-CSTT--TTCG--GGSSEEEEECCCHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHhhCHHHHHHHHHHHHhc--cCCCEEEEEcc-cccc--CCch--hhCCEEEEEECCHHHHHHHHHHcCCCHHHHHH
Confidence 01111111 1112211 11157888873 2111 0111 237899999999999999984320 11111
Q ss_pred HHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHHccccc
Q 023790 209 AYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHLQHINA 254 (277)
Q Consensus 209 ~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~~~~~~ 254 (277)
.+..+ .+...++...+ +.||++.+++++.++|.+.+.....++
T Consensus 154 ~~~~~-~~~~~~~~~ad--~vId~~~~~~~~~~~i~~~l~~~~~~~ 196 (204)
T 2if2_A 154 RWKKQ-MPIEEKVKYAD--YVIDNSGSIEETYKQVKKVYEELTRDP 196 (204)
T ss_dssp HHTTS-CCHHHHGGGCS--EECCCSSCHHHHHHHHHHHHHTTCC--
T ss_pred HHHhC-CChhHHHhcCC--EEEECCCCHHHHHHHHHHHHHHHhcCh
Confidence 22222 23333333333 457888899999999999998765554
No 61
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.49 E-value=2.5e-13 Score=111.89 Aligned_cols=155 Identities=15% Similarity=0.156 Sum_probs=90.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCcc
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (277)
++.+|+|+|+|||||||+++.|++.++.++++.++++++... ..++...+. .|+....+....++.. +..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~~--~~i~~i~~~---~g~~~~~~~~~~~l~~-l~~---- 72 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG--ADVGWVFDL---EGEEGFRDREEKVINE-LTE---- 72 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHT--SCHHHHHHH---HHHHHHHHHHHHHHHH-HHT----
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHhC--cCHHHHHHH---HhHHHHHHHHHHHHHH-HHh----
Confidence 456899999999999999999999999999999988876432 222211110 1221111111233322 222
Q ss_pred CccEEEEc---CccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcchH-----------HHHHHHHHHhchhHHHHHH
Q 023790 157 GEIGFILD---GLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSL-----------KEKLEAYAELGKPLEDYYQ 222 (277)
Q Consensus 157 ~~~g~Ild---GfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~~-----------~~rl~~y~~~~~~l~~~y~ 222 (277)
..++++. |.+......+.+.. ++++++|+++++++.+|+..+- .++++. +.....+.|.
T Consensus 73 -~~~~v~~~~~~~~~~~~~~~~l~~---~~~~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~~~~~~~---~~~~r~~~~~ 145 (173)
T 1kag_A 73 -KQGIVLATGGGSVKSRETRNRLSA---RGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEA---LANERNPLYE 145 (173)
T ss_dssp -SSSEEEECCTTGGGSHHHHHHHHH---HSEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHH---HHHHHHHHHH
T ss_pred -CCCeEEECCCeEEecHHHHHHHHh---CCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCchHHHHHH---HHHHHHHHHH
Confidence 2345553 44444444444443 5789999999999999984321 223332 2222234454
Q ss_pred hcCcEEEEeCC-CCHHHHHHHHHHHHHH
Q 023790 223 KQKKLLEFQVG-SAPLETWQGLLTALHL 249 (277)
Q Consensus 223 ~~~~li~Ida~-~s~eev~~~I~~~L~~ 249 (277)
... .+.||++ .++++++++|.+.+..
T Consensus 146 ~~a-~~~id~~~~~~~~~~~~i~~~l~~ 172 (173)
T 1kag_A 146 EIA-DVTIRTDDQSAKVVANQIIHMLES 172 (173)
T ss_dssp HHC-SEEC-----CHHHHHHHHHHHHC-
T ss_pred hhC-CEEEECCCCCHHHHHHHHHHHHHh
Confidence 433 3567776 7999999999988753
No 62
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.49 E-value=3.8e-14 Score=127.25 Aligned_cols=131 Identities=14% Similarity=0.085 Sum_probs=83.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh-CCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCcc
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~-g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (277)
++.|+|+|+|||||||+|+.|++++ |+.+|++| .+++.+...++ +.. ..+...++..+.+++.+.+...+... .
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D-~~r~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~--~ 76 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYRQSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILYGG--D 76 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHHHHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTSC--T
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc-HHHHHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHhhc--c
Confidence 4689999999999999999999985 99999998 55555432111 000 00001111112233334444444211 2
Q ss_pred CccEEEEcCccCCHHHHHHHHhh----cCcCEEEEecCCHHHHHHhhcc---------hHHHHHHHHHHh
Q 023790 157 GEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNRGG---------SLKEKLEAYAEL 213 (277)
Q Consensus 157 ~~~g~IldGfPrt~~qae~l~~~----~~~d~vI~L~~~~e~l~~Rl~~---------~~~~rl~~y~~~ 213 (277)
.+.++|+||++.+..+.+.+.+. ..+..+|+|++|.+++.+|+.. .++++++.|+..
T Consensus 77 ~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~e~i~~~~~~~~~~ 146 (301)
T 1ltq_A 77 SVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREY 146 (301)
T ss_dssp TCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccCCCCCHHHHHHHHHHHhcc
Confidence 46789999999887776666533 2345899999999999999832 345566666544
No 63
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.48 E-value=9.1e-13 Score=111.79 Aligned_cols=159 Identities=12% Similarity=0.097 Sum_probs=95.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHH-------HHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSED-------IIFGLLSK 148 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~-------~~~~ll~~ 148 (277)
..+.+|+|+|++||||||+++.|++.+|..+++.+++..... .. ....|....+. .....+..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~---------~~-~~~~g~~~~~~~~~~~~~~~~~~~~~ 96 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPEN---------IA-TMQRGIPLTDEDRWPWLRSLAEWMDA 96 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHH---------HH-HHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHH---------HH-HHhcCCCCCCcccccHHHHHHHHHHH
Confidence 357789999999999999999999999999999877632110 00 01112211111 11122222
Q ss_pred HHHcCCccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcchHH--HHHHHHHHhchhHHHHHHhcCc
Q 023790 149 RLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLK--EKLEAYAELGKPLEDYYQKQKK 226 (277)
Q Consensus 149 ~l~~~~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~~~--~rl~~y~~~~~~l~~~y~~~~~ 226 (277)
.+. .+..+|+|.........+.+.+......+|+|+||++++.+|+..+-. ...+.+..+.......|.+ ..
T Consensus 97 ~~~-----~g~~viid~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~-~~ 170 (200)
T 4eun_A 97 RAD-----AGVSTIITCSALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGHFMPASLLQSQLATLEALEPD-ES 170 (200)
T ss_dssp HHH-----TTCCEEEEECCCCHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCCSSCGGGHHHHHHHCCCCCTT-SC
T ss_pred HHh-----cCCCEEEEchhhhHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccCCCCHHHHHHHHHHhCCCCCC-CC
Confidence 222 235677776444455555565544456899999999999999843210 0011111111111122322 24
Q ss_pred EEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 227 LLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 227 li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
.+.||++.+++++.++|.+++...
T Consensus 171 ~~~Id~~~~~~e~~~~I~~~l~~~ 194 (200)
T 4eun_A 171 GIVLDLRQPPEQLIERALTWLDIA 194 (200)
T ss_dssp EEEEETTSCHHHHHHHHHHHHCCC
T ss_pred eEEEECCCCHHHHHHHHHHHHHhc
Confidence 678898899999999999998754
No 64
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.48 E-value=1.4e-13 Score=119.93 Aligned_cols=168 Identities=14% Similarity=0.052 Sum_probs=92.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCC-CccchhHHHH-HhcCCCChhHHHHHHHHhc-cccchHHHHHHHHHHHHHc
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV-PRISMSSIVR-QDLSPRSSLHKQIANAVNR-GEVVSEDIIFGLLSKRLED 152 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~-~~Is~~dllr-~~~~~~~~lg~~i~~~l~~-G~~ip~~~~~~ll~~~l~~ 152 (277)
.+++.|+|.|++||||||+++.|+++++. ..+++ +. ...+.++++|+.+++++.. +.+-+.....-...++.+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v---~~~treP~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~ 95 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNN---VVLTREPGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRREH 95 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGG---EEEEESSCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCcee---eEeeeCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 57899999999999999999999998764 22222 11 1234578889999988874 3322322111111122111
Q ss_pred C------CccCccEEEEcCccCC------------HHHHHHHHhh---cCcCEEEEecCCHHHHHHhhcchHHHHHH---
Q 023790 153 G------YYRGEIGFILDGLPRS------------RIQAEILDQL---AEIDLVVNFKCADNFIVTNRGGSLKEKLE--- 208 (277)
Q Consensus 153 ~------~~~~~~g~IldGfPrt------------~~qae~l~~~---~~~d~vI~L~~~~e~l~~Rl~~~~~~rl~--- 208 (277)
. ....+..+|.|.|..+ ......++.. ..||++|+|++|++++.+|+ . +.|++
T Consensus 96 ~~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri-~--rdr~E~~~ 172 (223)
T 3ld9_A 96 FVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRS-C--KNGYEFAD 172 (223)
T ss_dssp HHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC-------------------C
T ss_pred HHHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHh-c--cCccccch
Confidence 0 0112456777865421 2222333332 37999999999999999998 1 12222
Q ss_pred -HHHHhchh-HHHHHHh-cCcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 209 -AYAELGKP-LEDYYQK-QKKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 209 -~y~~~~~~-l~~~y~~-~~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
.|.+.... ..++.+. .+.+++||+++++++| ++|.+.+...
T Consensus 173 ~e~~~rv~~~y~~la~~~~~~~~vIDa~~sieeV-~~I~~~l~~~ 216 (223)
T 3ld9_A 173 MEFYYRVRDGFYDIAKKNPHRCHVITDKSETYDI-DDINFVHLEV 216 (223)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTEEEEESSCSSSCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEcCCCCHHHH-HHHHHHHHHH
Confidence 23333222 1222222 2478999999999999 9999988753
No 65
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.48 E-value=1.7e-13 Score=113.95 Aligned_cols=154 Identities=13% Similarity=0.179 Sum_probs=91.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCc
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~ 155 (277)
.++..|+|+|+|||||||+++.|++++|+.++++++++++... ....+.. ........+.+.+.+...+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--- 79 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQL-YDGYDEE-----YDCPILDEDRVVDELDNQMRE--- 79 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTC-EEEEETT-----TTEEEECHHHHHHHHHHHHHH---
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcch-hhhhhhh-----hcCccCChHHHHHHHHHHHhc---
Confidence 3567899999999999999999999999999999999876511 0000000 001112333444445444443
Q ss_pred cCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcchH------HHHH--HHHHHhchhHHHHHHhcCcE
Q 023790 156 RGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSL------KEKL--EAYAELGKPLEDYYQKQKKL 227 (277)
Q Consensus 156 ~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~~------~~rl--~~y~~~~~~l~~~y~~~~~l 227 (277)
.++|+|+..... +.. ..++.+|+|+||++++.+|+.++- ..+. +.+..........|. .+.+
T Consensus 80 ---g~~vv~~~~~~~-----~~~-~~~~~vi~L~~~~e~l~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~~~~ 149 (180)
T 3iij_A 80 ---GGVIVDYHGCDF-----FPE-RWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYK-EEIV 149 (180)
T ss_dssp ---CCEEEECSCCTT-----SCG-GGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSC-GGGE
T ss_pred ---CCEEEEechhhh-----cch-hcCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CCeE
Confidence 366777543221 110 127899999999999999995431 1111 111122222334443 2456
Q ss_pred EEEeCCCCHHHH---HHHHHHHHHH
Q 023790 228 LEFQVGSAPLET---WQGLLTALHL 249 (277)
Q Consensus 228 i~Ida~~s~eev---~~~I~~~L~~ 249 (277)
+.++ +.+++++ .++|.+.+..
T Consensus 150 i~~~-~~~~~ev~~~v~~i~~~l~~ 173 (180)
T 3iij_A 150 HQLP-SNKPEELENNVDQILKWIEQ 173 (180)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHHHH
T ss_pred EEcC-CCCHHHHHHHHHHHHHHHHH
Confidence 6665 6899999 5555555543
No 66
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.46 E-value=9e-13 Score=110.97 Aligned_cols=162 Identities=10% Similarity=0.056 Sum_probs=95.2
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHH----hccccchHHHH--------
Q 023790 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV----NRGEVVSEDII-------- 142 (277)
Q Consensus 75 ~~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l----~~G~~ip~~~~-------- 142 (277)
+.++++|.|.|++||||||+|+.|++. |++++++|+++++.. .+.+ ..+.+.+ ..|.. ....+
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~-~~~~--~~i~~~~~~~~~~g~i-~~~~l~~~~~~~~ 79 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR-ENKE--EELKRLFPEAVVGGRL-DRRALARLVFSDP 79 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH-HHTH--HHHHHHCGGGEETTEE-CHHHHHHHHTTSH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc-CChH--HHHHHHHHHHHhCCCc-CHHHHHHHHhCCH
Confidence 467889999999999999999999998 999999999987764 2222 2222222 11221 11111
Q ss_pred ----------HHHH-HHHHHcCCccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcch--H-HHHH-
Q 023790 143 ----------FGLL-SKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS--L-KEKL- 207 (277)
Q Consensus 143 ----------~~ll-~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~--~-~~rl- 207 (277)
..++ ...+......++..+|+|+ |.... ..+. ..+|.+|+|++|++++.+|+..+ + .+.+
T Consensus 80 ~~~~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~-~~l~~--~~~~--~~~d~~i~l~~~~e~~~~R~~~R~~~~~~~~~ 154 (203)
T 1uf9_A 80 ERLKALEAVVHPEVRRLLMEELSRLEAPLVFLEI-PLLFE--KGWE--GRLHGTLLVAAPLEERVRRVMARSGLSREEVL 154 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEEC-TTTTT--TTCG--GGSSEEEEECCCHHHHHHHHHTTTCCTTHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHhhhcCCCEEEEEe-cceec--cCch--hhCCEEEEEECCHHHHHHHHHHcCCCCHHHHH
Confidence 1111 1122211001246678886 42211 0111 24689999999999999998432 1 1111
Q ss_pred HHHHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 208 EAYAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 208 ~~y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
..+..+ .+...++...+ +.||++.+++++.++|.+++..
T Consensus 155 ~~i~~~-~~~~~~~~~ad--~vId~~~~~~~~~~~i~~~~~~ 193 (203)
T 1uf9_A 155 ARERAQ-MPEEEKRKRAT--WVLENTGSLEDLERALKAVLAE 193 (203)
T ss_dssp HHHTTS-CCHHHHHHHCS--EEECCSSHHHHHHHHHHHHHHS
T ss_pred HHHHHC-CChhHHHHhCC--EEEECCCCHHHHHHHHHHHHHH
Confidence 112222 22333333333 3678777999999999998864
No 67
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.46 E-value=3.6e-13 Score=115.24 Aligned_cols=164 Identities=14% Similarity=0.059 Sum_probs=97.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC------CCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE------VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKR 149 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g------~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~ 149 (277)
.+++.|+|+|+|||||||+++.|++.++ +.+++. |.++..+.....+...-+. ..+ .. +...+...
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~-d~~r~~l~~~~~~~~~~r~-----~~~-~~-~~~~~~~~ 94 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG-DNIRFGLNKDLGFSEADRN-----ENI-RR-IAEVAKLF 94 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH-HHHTTTTTTTCCSSHHHHH-----HHH-HH-HHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC-hHHhhhhccccCCCHHHHH-----HHH-HH-HHHHHHHH
Confidence 4678999999999999999999999886 777775 4455443221111000000 000 01 11222233
Q ss_pred HHcCCccCccEEEEcCccCC-HHHHHHHHhh----------cCcCEEEEecCCHHHHHHhhcchHHHH-HHHHHHhchhH
Q 023790 150 LEDGYYRGEIGFILDGLPRS-RIQAEILDQL----------AEIDLVVNFKCADNFIVTNRGGSLKEK-LEAYAELGKPL 217 (277)
Q Consensus 150 l~~~~~~~~~g~IldGfPrt-~~qae~l~~~----------~~~d~vI~L~~~~e~l~~Rl~~~~~~r-l~~y~~~~~~l 217 (277)
+.. +..+|+| ++.. ....+.+..+ ..|+++|+|+||++++.+|+...+..+ .+.|......+
T Consensus 95 l~~-----g~~VI~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~~r~~~~~~r~~~~~~~~~~ 168 (211)
T 1m7g_A 95 ADS-----NSIAITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIKEFTGI 168 (211)
T ss_dssp HHT-----TCEEEEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCHHHHHHHTSSSSCBTT
T ss_pred HHC-----CCEEEEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhhhHHHHHHHHhcchhhhhhh
Confidence 332 4577888 4431 1222333321 246899999999999999973322222 22233333344
Q ss_pred HHHHHhc-CcEEEEeCCC-CHHHHHHHHHHHHHHcccc
Q 023790 218 EDYYQKQ-KKLLEFQVGS-APLETWQGLLTALHLQHIN 253 (277)
Q Consensus 218 ~~~y~~~-~~li~Ida~~-s~eev~~~I~~~L~~~~~~ 253 (277)
...|+.. ...+.||++. ++++++++|.+.+...++.
T Consensus 169 ~~~y~~~~~~~~~IDt~~~s~eev~~~I~~~l~~~~~~ 206 (211)
T 1m7g_A 169 SAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDTKGYL 206 (211)
T ss_dssp TBCCCCCSSCSEEEECSSSCHHHHHHHHHHHHHHTTCS
T ss_pred hhhccCCCCCeEEEECCCCCHHHHHHHHHHHHHHcCCc
Confidence 4455432 2247889887 9999999999999887654
No 68
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.44 E-value=1.3e-12 Score=110.39 Aligned_cols=159 Identities=13% Similarity=0.086 Sum_probs=91.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcC----CCCh-----hHHHHHHHH--------------hcccc
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS----PRSS-----LHKQIANAV--------------NRGEV 136 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~----~~~~-----lg~~i~~~l--------------~~G~~ 136 (277)
+|.|.|++||||||+|+.|++.+|+++++.|++.+.... .+.+ ....+...+ ..|+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 83 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGED 83 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCee
Confidence 799999999999999999999999999999999876421 1111 111111111 12332
Q ss_pred chHH-----------------HHHHHHHHHHHcCCccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhh
Q 023790 137 VSED-----------------IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR 199 (277)
Q Consensus 137 ip~~-----------------~~~~ll~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl 199 (277)
++.+ .+.+.+...+... . .++|+||.... . .+ ...++++|+|++|++++.+|+
T Consensus 84 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~--~~~vi~g~~~~--~--~~--~~~~d~~i~l~a~~e~~~~R~ 153 (208)
T 3ake_A 84 LTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEV--P--PPFVAEGRDMG--T--AV--FPEAAHKFYLTASPEVRAWRR 153 (208)
T ss_dssp CGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHS--C--SCEEEEESSCC--C--CC--CTTCSEEEEEECCHHHHHHHH
T ss_pred CchhhChHHHHHHHHHhcccHHHHHHHHHHHHHh--c--CCEEEEcccee--E--EE--ecCCcEEEEEECCHHHHHHHH
Confidence 2210 1112222222222 2 57899986322 0 01 124789999999999999998
Q ss_pred cchHHHHHHHHHHhchhHHHHH----HhcCcEEEEeCCC-CHHHHHHHHHHHHH
Q 023790 200 GGSLKEKLEAYAELGKPLEDYY----QKQKKLLEFQVGS-APLETWQGLLTALH 248 (277)
Q Consensus 200 ~~~~~~rl~~y~~~~~~l~~~y----~~~~~li~Ida~~-s~eev~~~I~~~L~ 248 (277)
..+.....+...+........| ......+.||++. +++++.++|.+.+.
T Consensus 154 ~~r~~~~~~~~~~~~~~R~~~~~~~~~~~ad~~~Id~~~~~~ee~~~~I~~~~~ 207 (208)
T 3ake_A 154 ARERPQAYEEVLRDLLRRDERDKAQSAPAPDALVLDTGGMTLDEVVAWVLAHIR 207 (208)
T ss_dssp HHTSSSCHHHHHHHHHHHHHTC--CCCCCTTCEEEETTTSCHHHHHHHHHHHHH
T ss_pred HhhcccCHHHHHHHHHHHHHHHhhcccCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence 4321100011111111111111 2222346788875 99999999998774
No 69
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.41 E-value=7e-12 Score=108.19 Aligned_cols=163 Identities=12% Similarity=0.025 Sum_probs=107.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhcccc-----ch-------------
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEV-----VS------------- 138 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~-----ip------------- 138 (277)
.+.-|.++|++||||||+++.|++ +|+++|++|.+.++...++++....+.+.+..+.+ +.
T Consensus 8 ~~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~ 86 (210)
T 4i1u_A 8 HMYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDED 86 (210)
T ss_dssp SCCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHH
Confidence 566799999999999999999998 99999999999999888877777777766533221 11
Q ss_pred -----HHHHHHHHHHHHHcCCc-cCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcch-------HHH
Q 023790 139 -----EDIIFGLLSKRLEDGYY-RGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS-------LKE 205 (277)
Q Consensus 139 -----~~~~~~ll~~~l~~~~~-~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~-------~~~ 205 (277)
+.++.+.+.+.+..... ....-+|+|. |.-.+. ..+.. .+|.+|+++||+++.++|+.++ +.+
T Consensus 87 ~~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~-pLL~E~-~~~~~--~~D~vi~V~ap~e~r~~Rl~~Rdg~s~eea~~ 162 (210)
T 4i1u_A 87 ARRRLEAITHPLIRAETEREARDAQGPYVIFVV-PLLVES-RNWKA--RCDRVLVVDCPVDTQIARVMQRNGFTREQVEA 162 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEEC-TTCTTC-HHHHH--HCSEEEEEECCHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEE-eccccc-CCccc--cCCeEEEEECCHHHHHHHHHhcCCCCHHHHHH
Confidence 13344444444432100 1223466674 543320 11222 3799999999999999999432 233
Q ss_pred HHHHHHHhchhHHHHHHhcCcEEEEeCC-CCHHHHHHHHHHHHHHc
Q 023790 206 KLEAYAELGKPLEDYYQKQKKLLEFQVG-SAPLETWQGLLTALHLQ 250 (277)
Q Consensus 206 rl~~y~~~~~~l~~~y~~~~~li~Ida~-~s~eev~~~I~~~L~~~ 250 (277)
|+ ..+. +..+.+...+ ++|+.+ .+++++.++|.+++...
T Consensus 163 ri---~~Q~-~~eek~~~AD--~VIdN~~gsle~l~~qV~~l~~~~ 202 (210)
T 4i1u_A 163 II---ARQA-TREARLAAAD--DVIVNDAATPDALAVQVDALHQRY 202 (210)
T ss_dssp HH---HHSC-CHHHHHHTCS--EEEECSSCCHHHHHHHHHHHHHHH
T ss_pred HH---HHcC-ChHHHHHhCC--EEEECCCCCHHHHHHHHHHHHHHH
Confidence 33 3333 4444444444 345767 89999999999888753
No 70
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.40 E-value=4e-13 Score=115.01 Aligned_cols=165 Identities=13% Similarity=0.107 Sum_probs=93.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHh----cCCCChhHHHHHHH-------H-----------hcc
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD----LSPRSSLHKQIANA-------V-----------NRG 134 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~----~~~~~~lg~~i~~~-------l-----------~~G 134 (277)
+++.|+|+|++||||||+++.|++++|++++++|++++.. ...+. +..+.+. + ..|
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~f~~~~~~g~~i~~~g 79 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNK--TEDFAKLVDQTTLDLTYKADKGQCVILDN 79 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTS--CSCHHHHHHTCCEEEEECTTCCEEEEETT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhh--hHHHHHHHHhccccccccccccceEEeCC
Confidence 4578999999999999999999999999999999998863 22222 2223322 1 234
Q ss_pred ccchHH----HHH---------HHHHHHHHcC--CccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhh
Q 023790 135 EVVSED----IIF---------GLLSKRLEDG--YYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR 199 (277)
Q Consensus 135 ~~ip~~----~~~---------~ll~~~l~~~--~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl 199 (277)
+.++.+ .+. ..+.+.+... ....+.++|++|- ... .. -+..++++|+|++|++++.+|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~vi~g~--~~~--~~--~~~~~~~vi~l~a~~e~~~~R~ 153 (219)
T 2h92_A 80 EDVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELAAEKGIVMDGR--DIG--TV--VLPDADLKVYMIASVEERAERR 153 (219)
T ss_dssp EECGGGSSSSHHHHHHHHHHTSHHHHHHHHHHHHHHHTTCCEEEEES--SCC--CC--CCTTCSEEEEEECCHHHHHHHH
T ss_pred ccchhhcCcHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcEEEEcC--Ccc--ce--ecCCCCEEEEEECCHHHHHHHH
Confidence 332211 111 1111111100 0113467999983 110 00 0124689999999999999996
Q ss_pred cchH---------HHHHHHHHHhc-----hhHHHHHHhcCcEEEEeCC-CCHHHHHHHHHHHHHHc
Q 023790 200 GGSL---------KEKLEAYAELG-----KPLEDYYQKQKKLLEFQVG-SAPLETWQGLLTALHLQ 250 (277)
Q Consensus 200 ~~~~---------~~rl~~y~~~~-----~~l~~~y~~~~~li~Ida~-~s~eev~~~I~~~L~~~ 250 (277)
.... +.-.+.+.++. ..+.++|.. ...+.||++ .++++++++|.+.+..+
T Consensus 154 ~~~~~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~-~d~~~Id~~~~~~ee~~~~I~~~l~~~ 218 (219)
T 2h92_A 154 YKDNQLRGIESNFEDLKRDIEARDQYDMNREISPLRKA-DDAVTLDTTGKSIEEVTDEILAMVSQI 218 (219)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCC-TTCEEEECTTCCHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcccCHHHHHHHHHHHHHhhhhhhccccccC-CCeEEEECCCCCHHHHHHHHHHHHhcc
Confidence 3211 11111121111 001122322 223577876 59999999999988653
No 71
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.40 E-value=2.5e-12 Score=107.53 Aligned_cols=159 Identities=14% Similarity=0.111 Sum_probs=89.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC-----CCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHH--HHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGL--LSK 148 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g-----~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~l--l~~ 148 (277)
.+++.|+|+|+|||||||+++.|++.++ +.+++. |.++..+.....+...-+ ......+ +..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~r----------~~~~~~~~~~~~ 79 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG-DWARTTVSEGAGFTREER----------LRHLKRIAWIAR 79 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH-HHHHTTTTTTCCCCHHHH----------HHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH-HHHHHHHhhccCCChhhH----------HHHHHHHHHHHH
Confidence 5788999999999999999999999875 345555 444544332111100000 0011111 111
Q ss_pred HHHcCCccCccEEEEcCccCCHHHHHHHHh----hcCcCEEEEecCCHHHHHHhhcchHHHHHH-HHHHhchhHHHHHHh
Q 023790 149 RLEDGYYRGEIGFILDGLPRSRIQAEILDQ----LAEIDLVVNFKCADNFIVTNRGGSLKEKLE-AYAELGKPLEDYYQK 223 (277)
Q Consensus 149 ~l~~~~~~~~~g~IldGfPrt~~qae~l~~----~~~~d~vI~L~~~~e~l~~Rl~~~~~~rl~-~y~~~~~~l~~~y~~ 223 (277)
.+.. .+..+|.|+........+.+.. ...++++|+|++|++++.+|+......+.. ...+....+.+.|..
T Consensus 80 ~~~~----~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~~~~~~~~~~~~~~~~~~~~y~~ 155 (186)
T 2yvu_A 80 LLAR----NGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGLYKKALKGELENFTGITDPYEP 155 (186)
T ss_dssp HHHT----TTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHHHHHHHHTTCCSSCHHHHSCCCC
T ss_pred HHHh----CCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhhhhhHHhhcchhhhhhhhhcccC
Confidence 1221 2345666876543333333322 234789999999999999998432211111 000011112233442
Q ss_pred -cCcEEEEeCC-CCHHHHHHHHHHHHHH
Q 023790 224 -QKKLLEFQVG-SAPLETWQGLLTALHL 249 (277)
Q Consensus 224 -~~~li~Ida~-~s~eev~~~I~~~L~~ 249 (277)
....+.||++ .++++++++|.+.+..
T Consensus 156 ~~~~~~~Id~~~~~~~ev~~~I~~~l~~ 183 (186)
T 2yvu_A 156 PENPQLVLDTESNTIEHNVSYLYSLVKA 183 (186)
T ss_dssp CSSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 1235678986 8999999999998864
No 72
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.38 E-value=2.3e-12 Score=109.67 Aligned_cols=155 Identities=12% Similarity=0.116 Sum_probs=91.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhcc-----cc-----------ch-
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG-----EV-----------VS- 138 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G-----~~-----------ip- 138 (277)
...++|.|+|++||||||+|+.|++.+|+++|++|+++++...+ ..+.+.+.+... .. -+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~---~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~ 86 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE---VKEKLVELFGGSVLEDGKVNRKKLAGIVFESRE 86 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH---THHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH---HHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHH
Confidence 35688999999999999999999999999999999998876532 122232222111 00 00
Q ss_pred -----HHHHHHHHHHHHHcCCccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcchHHHHHHHHHHh
Q 023790 139 -----EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGSLKEKLEAYAEL 213 (277)
Q Consensus 139 -----~~~~~~ll~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~~~~rl~~y~~~ 213 (277)
+.++...+...+.......+..+|+|+ |...+. .+. ..+|.+|+++||+++..+|+ +..++..|.+
T Consensus 87 ~~~~l~~i~hP~i~~~~~~~~~~~~~~vv~d~-pll~e~--~~~--~~~d~vi~v~a~~e~r~~Rl---i~~q~~~~~~- 157 (192)
T 2grj_A 87 NLKKLELLVHPLMKKRVQEIINKTSGLIVIEA-ALLKRM--GLD--QLCDHVITVVASRETILKRN---READRRLKFQ- 157 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC-TTTTTT--TGG--GGCSEEEEEECCHHHHHHHC---SSHHHHHTTC-
T ss_pred HHHHHHhhhCHHHHHHHHHHHHHcCCEEEEEE-eceeec--ChH--HhCCEEEEEECCHHHHHHHH---HHhcCCchhh-
Confidence 112222222222211001134566674 543221 122 24689999999999999998 2222211100
Q ss_pred chhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 214 GKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 214 ~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
+.....+ +.|+.+.+++++.++|.+++..
T Consensus 158 -----~~~~~AD--~vI~n~~~~~~l~~~v~~~~~~ 186 (192)
T 2grj_A 158 -----EDIVPQG--IVVANNSTLEDLEKKVEEVMKL 186 (192)
T ss_dssp -----TTCCCCS--EEEECSSCHHHHHHHHHHHHHH
T ss_pred -----hHHhcCC--EEEECCCCHHHHHHHHHHHHHH
Confidence 0011112 3467778999999999988764
No 73
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.37 E-value=7.9e-12 Score=108.74 Aligned_cols=166 Identities=11% Similarity=0.098 Sum_probs=97.1
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhc----CCCCh------hHHHHHH--------------H
Q 023790 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL----SPRSS------LHKQIAN--------------A 130 (277)
Q Consensus 75 ~~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~----~~~~~------lg~~i~~--------------~ 130 (277)
+.++.+|.|+|++||||||+++.|++++|+++++.|++++... ..+.+ +...+.. .
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i 92 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQLV 92 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCcccHHHHHHHHHhccccccccCCccceE
Confidence 3678899999999999999999999999999999999998632 12222 1111110 1
Q ss_pred Hhccccch----HHHHH---------H----HHHHHHHcCCccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHH
Q 023790 131 VNRGEVVS----EDIIF---------G----LLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADN 193 (277)
Q Consensus 131 l~~G~~ip----~~~~~---------~----ll~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e 193 (277)
+..|+.++ .+.+. . .+...+... ..+.++|+||+.... ..+ ..++++|+|++|++
T Consensus 93 ~~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~--~~~~~~v~~g~~~~~---~~l---~~~d~vi~L~a~~e 164 (236)
T 1q3t_A 93 FVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEI--AQQGGIVMDGRDIGT---VVL---PQAELKIFLVASVD 164 (236)
T ss_dssp EETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHH--HTTSCEEEECSSCSS---SSG---GGCSEEEEEECCHH
T ss_pred eECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHh--cccCCEEEECCcchh---hhc---cCCCEEEEEECCHH
Confidence 12343221 11111 1 122211111 235689999986531 111 24689999999999
Q ss_pred HHHHhhcch---------HHHHHHHHHH-----hchhHHHHHHhcCcEEEEeCC-CCHHHHHHHHHHHHHH
Q 023790 194 FIVTNRGGS---------LKEKLEAYAE-----LGKPLEDYYQKQKKLLEFQVG-SAPLETWQGLLTALHL 249 (277)
Q Consensus 194 ~l~~Rl~~~---------~~~rl~~y~~-----~~~~l~~~y~~~~~li~Ida~-~s~eev~~~I~~~L~~ 249 (277)
++.+|+..+ .++-.+.+.+ ....+.++|... ..+.||++ .++++++++|.+++..
T Consensus 165 ~~~~R~~~~~~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~-d~~vId~~~~s~eev~~~I~~~l~~ 234 (236)
T 1q3t_A 165 ERAERRYKENIAKGIETDLETLKKEIAARDYKDSHRETSPLKQAE-DAVYLDTTGLNIQEVVEKIKAEAEK 234 (236)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCT-TCEEEECSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhcccccccccC-CEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 999996211 1111112221 111111223221 23577877 5999999999998864
No 74
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=99.37 E-value=1.7e-12 Score=114.72 Aligned_cols=69 Identities=17% Similarity=0.168 Sum_probs=45.2
Q ss_pred CcCEEEEecCCHHHHHHhhcch-----------HHHH----HHHHHHh--chhHHHHHHhcCcEEEEeCCCCHHHHHHHH
Q 023790 181 EIDLVVNFKCADNFIVTNRGGS-----------LKEK----LEAYAEL--GKPLEDYYQKQKKLLEFQVGSAPLETWQGL 243 (277)
Q Consensus 181 ~~d~vI~L~~~~e~l~~Rl~~~-----------~~~r----l~~y~~~--~~~l~~~y~~~~~li~Ida~~s~eev~~~I 243 (277)
.||++|+|++|++++.+|+..+ ..++ ++.|.++ ..+....|.+ +.+++||++.++++|+++|
T Consensus 174 ~pd~vi~L~~~~e~~~~Ri~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~-~~~~~Id~~~~~eev~~~I 252 (263)
T 1p5z_B 174 ELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQE-VPILTLDVNEDFKDKYESL 252 (263)
T ss_dssp CCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGG-SCEEEEECCSCHHHHHHHH
T ss_pred CCCeEEEEECCHHHHHHHHHhcCCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhcc-CCEEEEECCCCHHHHHHHH
Confidence 6899999999999999998321 1111 1111111 1111111222 4588999999999999999
Q ss_pred HHHHHHc
Q 023790 244 LTALHLQ 250 (277)
Q Consensus 244 ~~~L~~~ 250 (277)
.+.+...
T Consensus 253 ~~~l~~~ 259 (263)
T 1p5z_B 253 VEKVKEF 259 (263)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998753
No 75
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.35 E-value=6.7e-13 Score=112.89 Aligned_cols=165 Identities=12% Similarity=0.048 Sum_probs=97.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh-CCCccchhHHHHHhcCCCChhHHHHHHHHhc-c--ccchHHHHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQDLSPRSSLHKQIANAVNR-G--EVVSEDIIFGLLSKRLE 151 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~-g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~-G--~~ip~~~~~~ll~~~l~ 151 (277)
.++.+|.|.|++||||||+++.|++.+ ++.+++.|+++.....- ..+ ...+.. . ..+......+.+...+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~l~~~i~~~l~ 93 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEI--ETD---KNGFLQYDVLEALNMEKMMSAISCWME 93 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGS--CBC---TTSCBCCSSGGGBCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHh--hcc---ccCCChhHHHHHhHHHHHHHHHHHHHh
Confidence 467889999999999999999999998 89999999876532110 000 000000 0 00111122222222222
Q ss_pred c---CC-------ccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcch------HHHHHH-HHHHhc
Q 023790 152 D---GY-------YRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS------LKEKLE-AYAELG 214 (277)
Q Consensus 152 ~---~~-------~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~------~~~rl~-~y~~~~ 214 (277)
. .. ......+|+||++... .+.+. ..+|.+|+++++++++.+|+..+ ..+++. .+....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~vi~eg~~~~~--~~~~~--~~~d~~i~l~~~~~~~~~R~~~R~~~~e~~~~~~~~~~~~~~ 169 (207)
T 2qt1_A 94 SARHSVVSTDQESAEEIPILIIEGFLLFN--YKPLD--TIWNRSYFLTIPYEECKRRRSTRVYQPPDSPGYFDGHVWPMY 169 (207)
T ss_dssp HHTTSSCCC-----CCCCEEEEECTTCTT--CGGGT--TTCSEEEEEECCHHHHHHHHHHSCCSSCCCTTHHHHTHHHHH
T ss_pred CCCCCCcCCCeeecCCCCEEEEeehHHcC--cHHHH--HhcCeeEEEECCHHHHHHHHHHcCCCccchHHHHHHHHhHHH
Confidence 1 00 0124578999965321 11111 35789999999999999997221 112222 111122
Q ss_pred hhHHHHHHhc-CcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 215 KPLEDYYQKQ-KKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 215 ~~l~~~y~~~-~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
....+.+... +.++.||+++++++++++|.+.+..
T Consensus 170 ~~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~~ 205 (207)
T 2qt1_A 170 LKYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLIQ 205 (207)
T ss_dssp HHHHHHGGGCSSCCEEEETTSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHHh
Confidence 2233445443 5678899999999999999998864
No 76
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.34 E-value=1.3e-12 Score=114.92 Aligned_cols=163 Identities=14% Similarity=0.068 Sum_probs=94.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCC----------ccchhHHHHHhcCCCChhHHHHHHHHhccccc-------h
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP----------RISMSSIVRQDLSPRSSLHKQIANAVNRGEVV-------S 138 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~----------~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~i-------p 138 (277)
.++++|.|.|+|||||||+|+.|++.+|++ ++++|++++... .+ .+. ....|... .
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~-----~~-~~~-~~~~g~~~f~~~~~~d 92 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLT-----SE-QKA-KALKGQFNFDHPDAFD 92 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCC-----HH-HHH-HHHTTCSCTTSGGGBC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccC-----hh-hhh-hhccCCCCCCCcchhh
Confidence 467889999999999999999999999988 689998876321 11 111 11122221 1
Q ss_pred HHHHHHHHHHHHHcCC-------------------ccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhh
Q 023790 139 EDIIFGLLSKRLEDGY-------------------YRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNR 199 (277)
Q Consensus 139 ~~~~~~ll~~~l~~~~-------------------~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl 199 (277)
.+.+.+.|........ ......+|+||.+.... ..+.. .+|.+|+|+++++++++|+
T Consensus 93 ~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~--~~~~~--~~d~vi~l~~~~e~~~~R~ 168 (252)
T 1uj2_A 93 NELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYS--QEVRD--LFQMKLFVDTDADTRLSRR 168 (252)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSS--HHHHH--HCSEEEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccC--HHHHH--hcCeeEEEeCCHHHHHHHH
Confidence 1223344433221100 01246799999654211 11222 2589999999999999998
Q ss_pred cchH--------HHHHHHHHHhchh-HHH----HHHhcCcEE--EEeCCCCHHHHHHHHHHHHHH
Q 023790 200 GGSL--------KEKLEAYAELGKP-LED----YYQKQKKLL--EFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 200 ~~~~--------~~rl~~y~~~~~~-l~~----~y~~~~~li--~Ida~~s~eev~~~I~~~L~~ 249 (277)
..+- +.-.+.|.....+ ... .+...+.++ .||++.++++++++|.+.+..
T Consensus 169 ~~R~~~~rg~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~id~~~s~e~v~~~I~~~l~~ 233 (252)
T 1uj2_A 169 VLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDILNG 233 (252)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhCCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEecCCCChhHHHHHHHHHHHHHcc
Confidence 4321 1111222222211 111 122233333 247778999999999999875
No 77
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.32 E-value=4.3e-11 Score=104.13 Aligned_cols=168 Identities=13% Similarity=0.078 Sum_probs=91.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCC-CChh------HHHHHH-H---Hhcc-----------
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP-RSSL------HKQIAN-A---VNRG----------- 134 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~-~~~l------g~~i~~-~---l~~G----------- 134 (277)
.+++|.|.|++||||||+|+.||+++|+++++ +++++..... +-+. ++.... . +..+
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~ 91 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHSKPSP 91 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHHCC------------------------------------
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHHHcCCCHHHHHHHHhhccccHHHHHhccccccccccccc
Confidence 45789999999999999999999999999999 6777664332 1110 111100 0 0000
Q ss_pred --ccchHHHHHHHHHHHHHcCCccCccEEEEcCccCCHHHHHHHH--hhcCcCEEEEecCCHHHHHHhhcc-------hH
Q 023790 135 --EVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILD--QLAEIDLVVNFKCADNFIVTNRGG-------SL 203 (277)
Q Consensus 135 --~~ip~~~~~~ll~~~l~~~~~~~~~g~IldGfPrt~~qae~l~--~~~~~d~vI~L~~~~e~l~~Rl~~-------~~ 203 (277)
....++.+.....+.+.+. ....++|++|.- -. -.+. .-..-.++|||++|.+++.+|+.+ ..
T Consensus 92 ~~~~~~~~~~f~~~~~~i~~l--a~~~~~Vi~Grg--gg--~vl~~~~~~~~~~~VfL~A~~e~r~~Ri~~~~~~~~~~a 165 (223)
T 3hdt_A 92 NDKLTSPENLFKFQSEVMREL--AESEPCIFVGRA--AG--YVLDQDEDIERLIRIFVYTDKVKKVQRVMEVDCIDEERA 165 (223)
T ss_dssp ------HHHHHHHHHHHHHHH--HHHSCEEEESTT--HH--HHHHHCTTCCEEEEEEEECCHHHHHHHHHHHHTCCHHHH
T ss_pred ccccccHHHHHHHHHHHHHHH--HhCCCEEEEeCC--cc--hhcccccCCCCeEEEEEECCHHHHHHHHHHhcCCCHHHH
Confidence 0011122222222222221 112457777641 11 1121 111225899999999999999832 22
Q ss_pred HHHHHHHHHhchhHHHHHHh------cCcEEEEeCC-CCHHHHHHHHHHHHHHcc
Q 023790 204 KEKLEAYAELGKPLEDYYQK------QKKLLEFQVG-SAPLETWQGLLTALHLQH 251 (277)
Q Consensus 204 ~~rl~~y~~~~~~l~~~y~~------~~~li~Ida~-~s~eev~~~I~~~L~~~~ 251 (277)
.+++....+...+...+|-. ..--+.||++ .+++++++.|.+.++.++
T Consensus 166 ~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~eevv~~I~~~i~~~~ 220 (223)
T 3hdt_A 166 KRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLEETAELIKAYIRLKG 220 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 33333333333333332210 1112456764 799999999999998754
No 78
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.31 E-value=3.3e-11 Score=106.20 Aligned_cols=166 Identities=16% Similarity=0.109 Sum_probs=92.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhc----CCCC-----hhHHHHHHHHh--------------
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL----SPRS-----SLHKQIANAVN-------------- 132 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~----~~~~-----~lg~~i~~~l~-------------- 132 (277)
..+.+|.|.|++||||||+++.|++++|+.+++.|.++|... ..+. ..-..+...+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 356789999999999999999999999999999999985532 1111 11111111100
Q ss_pred ccccchH-----------------HHHHHHHHHHHHcCCccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHH
Q 023790 133 RGEVVSE-----------------DIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFI 195 (277)
Q Consensus 133 ~G~~ip~-----------------~~~~~ll~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l 195 (277)
.+..+.+ ..+.+.+....... ..+.++|+||--.... -+...+++|||++|++++
T Consensus 105 ~~~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~~~--a~~~~~V~~gr~~~~~------v~~~~~~~ifl~A~~e~r 176 (252)
T 4e22_A 105 EGEDVSNEIRTETVGNTASQAAAFPRVREALLRRQRAF--REAPGLIADGRDMGTI------VFPDAPVKIFLDASSQER 176 (252)
T ss_dssp TTEECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHHTT--CCSSCEEEEESSCCCC------CSTTCSEEEEEECCHHHH
T ss_pred CCeehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH--hhCCCEEEEeceecee------ecCCCCEEEEEECCHHHH
Confidence 0000100 11222333322332 3467889987311100 012357999999999999
Q ss_pred HHhhcchHHHH---------HHHHHHhch-----hHHHHHHhcCcEEEEeCC-CCHHHHHHHHHHHHHHc
Q 023790 196 VTNRGGSLKEK---------LEAYAELGK-----PLEDYYQKQKKLLEFQVG-SAPLETWQGLLTALHLQ 250 (277)
Q Consensus 196 ~~Rl~~~~~~r---------l~~y~~~~~-----~l~~~y~~~~~li~Ida~-~s~eev~~~I~~~L~~~ 250 (277)
.+|....+..+ .+...+... .+.+ +....--+.||++ .+++++.++|.+.+...
T Consensus 177 ~~R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~p-l~~~~d~~~Idts~~~~eev~~~I~~~i~~~ 245 (252)
T 4e22_A 177 AHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRSVAP-LVPAADALVLDSTSMSIEQVIEQALAYAQRI 245 (252)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHC------------C-CCCCTTEEEEECSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccccc-hhccCCeEEEECcCCCHHHHHHHHHHHHHHH
Confidence 99873321111 111111100 0001 0111113567765 58999999999999765
No 79
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.30 E-value=7.4e-11 Score=100.79 Aligned_cols=160 Identities=12% Similarity=0.092 Sum_probs=87.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCC-CChhHHHHHHHHhccccch----------------H
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP-RSSLHKQIANAVNRGEVVS----------------E 139 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~-~~~lg~~i~~~l~~G~~ip----------------~ 139 (277)
+.++|.|.|++||||||+++.||+++|+++++ +++++..... +-+. ..+.. .|+..+ .
T Consensus 5 ~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~g~~~-~~~~~---~~e~~~~~~~~~~~~~~~~~~~~ 79 (201)
T 3fdi_A 5 KQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDGRYSK-EVLER---FDEKPMNFAFIPVPAGGTTISLE 79 (201)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC-------------------------------------
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhcCCCH-HHHHH---HhhhchhHHHHHhcccccccccc
Confidence 35689999999999999999999999999999 8998764322 1110 01111 111111 0
Q ss_pred ----HHHHHHHHHHHHcCCccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcc-------hHHHHHH
Q 023790 140 ----DIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGG-------SLKEKLE 208 (277)
Q Consensus 140 ----~~~~~ll~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~-------~~~~rl~ 208 (277)
+...+++.+ +... ...++|++|.- -. -.|.. ....++|||++|.+++.+|+.+ ...+++.
T Consensus 80 ~~~~~~~~~~i~~-la~~---~~~~~Vi~Gr~--g~--~vl~~-~~~~~~V~L~A~~e~r~~R~~~~~~~~~~~~~~~i~ 150 (201)
T 3fdi_A 80 QDIAIRQFNFIRK-KANE---EKESFVIVGRC--AE--EILSD-NPNMISAFILGDKDTKTKRVMEREGVDEKTALNMMK 150 (201)
T ss_dssp CHHHHHHHHHHHH-HHHT---SCCCEEEESTT--HH--HHTTT-CTTEEEEEEEECHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHhh---cCCCEEEEECC--cc--hhcCC-CCCeEEEEEECCHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 112233322 2200 23568888741 11 11111 1125899999999999999832 1222222
Q ss_pred HHHHhchhHHHHHHh------cCcEEEEeC-CCCHHHHHHHHHHHHHHc
Q 023790 209 AYAELGKPLEDYYQK------QKKLLEFQV-GSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 209 ~y~~~~~~l~~~y~~------~~~li~Ida-~~s~eev~~~I~~~L~~~ 250 (277)
.-.+...+....|.. ..--+.||+ ..+++++++.|.+.++.+
T Consensus 151 ~~d~~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i~~~ 199 (201)
T 3fdi_A 151 KMDKMRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTATDMIIKYIDSR 199 (201)
T ss_dssp HHHHHHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHHHHHHHHHHHh
Confidence 222222222222200 001245665 479999999999998754
No 80
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.30 E-value=2.4e-11 Score=100.31 Aligned_cols=162 Identities=10% Similarity=0.033 Sum_probs=83.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCcc--chhHHHHHhcCCCCh---hHHHHHHHH-hccccchHHHH---HHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI--SMSSIVRQDLSPRSS---LHKQIANAV-NRGEVVSEDII---FGLLS 147 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~I--s~~dllr~~~~~~~~---lg~~i~~~l-~~G~~ip~~~~---~~ll~ 147 (277)
+++.|+|+|+|||||||+|+.|+++++..++ ++|+++.. ...... .+..+.+.. ..+........ ...+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEA-MPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVV 80 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHH-SCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhh-cchhhccchhhccccCCCccccchhHHHHHHHHHHHHH
Confidence 4578999999999999999999999987665 47665543 221100 000000000 00000001111 11222
Q ss_pred HHHHcCCccCccEEEEcCccC-CHHHH-HHHHhhcCcC-EEEEecCCHHHHHHhhcchHHHHHHHHHHhchhHHHHHHhc
Q 023790 148 KRLEDGYYRGEIGFILDGLPR-SRIQA-EILDQLAEID-LVVNFKCADNFIVTNRGGSLKEKLEAYAELGKPLEDYYQKQ 224 (277)
Q Consensus 148 ~~l~~~~~~~~~g~IldGfPr-t~~qa-e~l~~~~~~d-~vI~L~~~~e~l~~Rl~~~~~~rl~~y~~~~~~l~~~y~~~ 224 (277)
..+. .+..+|+|+... ..... +..+.+.... .+|+|+||.+++.+|+..+-.........+...+.. |..
T Consensus 81 ~~~~-----~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r~~~~~~~~~~~~~~~~~-~~~- 153 (178)
T 1qhx_A 81 AMAR-----AGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARGDRVAGMAAKQAYVVHE-GVE- 153 (178)
T ss_dssp HHHH-----TTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTSSSCTTHHHHHTTGGGT-TCC-
T ss_pred HHHh-----cCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhhCCcccchhhhhchhhcc-CCC-
Confidence 2222 245789998542 22211 2222222233 688999999999999843211000011112222211 211
Q ss_pred CcEEEEeCC-CCHHHHHHHHHHHH
Q 023790 225 KKLLEFQVG-SAPLETWQGLLTAL 247 (277)
Q Consensus 225 ~~li~Ida~-~s~eev~~~I~~~L 247 (277)
.-+.||++ .+++++.++|.+.+
T Consensus 154 -~d~~idt~~~~~~~~~~~I~~~l 176 (178)
T 1qhx_A 154 -YDVEVDTTHKESIECAWAIAAHV 176 (178)
T ss_dssp -CSEEEETTSSCHHHHHHHHHTTC
T ss_pred -CcEEEECCCCCHHHHHHHHHHHh
Confidence 23567765 59999999998654
No 81
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.26 E-value=5.2e-11 Score=98.80 Aligned_cols=161 Identities=15% Similarity=0.114 Sum_probs=85.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh---CCCccchh-HHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHH--HHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMS-SIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLL--SKR 149 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~---g~~~Is~~-dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll--~~~ 149 (277)
.+++.|+|+|++||||||+++.|++.+ |++++.++ +.+++.+......... . .+..+.++. ...
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~------~----~~~~~~~~~~~~~~ 72 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPE------D----REENVRRIAEVAKL 72 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHH------H----HHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhccccccc------c----HHHHHHHHHHHHHH
Confidence 468899999999999999999999998 98887553 4555433211100000 0 011111111 111
Q ss_pred HHcCCccCccEEEEcCccCC----HHHHHHH-HhhcCcCEEEEecCCHHHHHHhhcchHHHHHH-HHHHhchhHHHHHHh
Q 023790 150 LEDGYYRGEIGFILDGLPRS----RIQAEIL-DQLAEIDLVVNFKCADNFIVTNRGGSLKEKLE-AYAELGKPLEDYYQK 223 (277)
Q Consensus 150 l~~~~~~~~~g~IldGfPrt----~~qae~l-~~~~~~d~vI~L~~~~e~l~~Rl~~~~~~rl~-~y~~~~~~l~~~y~~ 223 (277)
+.. .+ .+++.|+... ......+ .....++.+|+|+||++++.+|+...+..+.. .+......+...|+.
T Consensus 73 ~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (179)
T 2pez_A 73 FAD----AG-LVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEK 147 (179)
T ss_dssp HHH----TT-CEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTSHHHHHHTTSSCSCBTTTBCCCC
T ss_pred HHH----CC-CEEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhhhHHHHhcccccccccCCccccC
Confidence 211 12 2344443222 1121222 22235789999999999999998543211110 000000111122322
Q ss_pred c--CcEEEEeCCCCHHHHHHHHHHHHHHcc
Q 023790 224 Q--KKLLEFQVGSAPLETWQGLLTALHLQH 251 (277)
Q Consensus 224 ~--~~li~Ida~~s~eev~~~I~~~L~~~~ 251 (277)
. ..++..+++.+++++.++|.+.+...+
T Consensus 148 ~~~ad~vid~~~~~~~~~~~~i~~~l~~~~ 177 (179)
T 2pez_A 148 PEAPELVLKTDSCDVNDCVQQVVELLQERD 177 (179)
T ss_dssp CSSCSEEEETTTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCcEEEECCCCCHHHHHHHHHHHHHHhc
Confidence 1 124333445799999999999987654
No 82
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.23 E-value=7.9e-11 Score=100.03 Aligned_cols=162 Identities=9% Similarity=0.012 Sum_probs=87.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCC-CccchhHHHHHhcCC---CCh----hHHHHHHHHhccccchHH-------
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV-PRISMSSIVRQDLSP---RSS----LHKQIANAVNRGEVVSED------- 140 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~-~~Is~~dllr~~~~~---~~~----lg~~i~~~l~~G~~ip~~------- 140 (277)
.+++.|+|+|+|||||||+++.|++.++- ...++.+..|+.... +.. ....+...+.+|..+...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFY 89 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCee
Confidence 46788999999999999999999998842 222221122211000 000 011222222233221100
Q ss_pred -HHHHHHHHHHHcCCccCccEEEEcCccCCHHHHHHHHhhcC--cCEEEEec-CCHHHHHHhhcc-------hHHHHHHH
Q 023790 141 -IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAE--IDLVVNFK-CADNFIVTNRGG-------SLKEKLEA 209 (277)
Q Consensus 141 -~~~~ll~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~~~~--~d~vI~L~-~~~e~l~~Rl~~-------~~~~rl~~ 209 (277)
.....+...+.. +..+|+|+.+.... .+.+... ...+|+|+ +|.+++.+|+.. .+++|+..
T Consensus 90 ~~~~~~i~~~l~~-----g~~vi~d~~~~~~~---~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~~~~~i~~rl~~ 161 (204)
T 2qor_A 90 GTLKSEYDLAVGE-----GKICLFEMNINGVK---QLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTEKPEEINKRMQE 161 (204)
T ss_dssp EEEHHHHHHHHHT-----TCEEEEECCHHHHH---HHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTTSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHc-----CCeEEEEECHHHHH---HHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 001223333332 57899998764433 2333222 23899998 999999999832 34455554
Q ss_pred HHHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 210 YAELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 210 y~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
......+. +....+ .+.+| + ++++++++|.+++...
T Consensus 162 ~~~~~~~~--~~~~~d-~vi~n-~-~~e~~~~~i~~~i~~~ 197 (204)
T 2qor_A 162 LTREMDEA--DKVGFN-YFIVN-D-DLARTYAELREYLLGS 197 (204)
T ss_dssp HHHHHHHH--HHHTCS-EEEEC-S-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--hhccCc-EEEEC-c-CHHHHHHHHHHHHHHH
Confidence 43222211 222223 33344 4 8999999999999754
No 83
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.17 E-value=3.3e-10 Score=95.91 Aligned_cols=162 Identities=14% Similarity=0.086 Sum_probs=90.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh---CCC--ccchhHHHHHhcCCCChhH-HHHHHHHhccccchHHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EVP--RISMSSIVRQDLSPRSSLH-KQIANAVNRGEVVSEDIIFGLLSKR 149 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~---g~~--~Is~~dllr~~~~~~~~lg-~~i~~~l~~G~~ip~~~~~~ll~~~ 149 (277)
.++.+|+|+|++||||||+++.|++.+ |.. +++.+++. ..+..+..+. +.....+ ..+.. +...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~-~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~ 92 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVR-HGLNRDLSFKAEDRAENI--------RRVGE-VAKL 92 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT-TTTTTTCCSSHHHHHHHH--------HHHHH-HHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhh-hHhhcccCcChHHHHHHH--------HHHHH-HHHH
Confidence 467889999999999999999999998 665 78775553 3222111110 0000000 00011 1122
Q ss_pred HHcCCccCccEEEEcCccCCHHHHHHHHhhcC--cCEEEEecCCHHHHHHhhcchHHHHHH--HHHHhchhHHHHHHhc-
Q 023790 150 LEDGYYRGEIGFILDGLPRSRIQAEILDQLAE--IDLVVNFKCADNFIVTNRGGSLKEKLE--AYAELGKPLEDYYQKQ- 224 (277)
Q Consensus 150 l~~~~~~~~~g~IldGfPrt~~qae~l~~~~~--~d~vI~L~~~~e~l~~Rl~~~~~~rl~--~y~~~~~~l~~~y~~~- 224 (277)
+.. .+..+|.++.-......+.+..... .-.+|||++|.+++.+|....+.++.. .+. ....+...|+..
T Consensus 93 ~~~----~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~~~~l~~~~r~~~~~-~~~~~~~~~~~~~ 167 (200)
T 3uie_A 93 FAD----AGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIK-GFTGIDDPYEPPL 167 (200)
T ss_dssp HHH----TTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHCTTSHHHHHHTTSSC-SCBTTTBCCCCCS
T ss_pred HHh----CCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhcccchHHHHhcCCCC-CCCCCCCcCcCCC
Confidence 222 2455666554333344444544432 235799999999999998443322111 000 011122234322
Q ss_pred CcEEEEeCC--CCHHHHHHHHHHHHHHccc
Q 023790 225 KKLLEFQVG--SAPLETWQGLLTALHLQHI 252 (277)
Q Consensus 225 ~~li~Ida~--~s~eev~~~I~~~L~~~~~ 252 (277)
.--+.||++ .+++++.++|.+.+...+.
T Consensus 168 ~~~~~idt~~~~~~~e~v~~i~~~l~~~~~ 197 (200)
T 3uie_A 168 NCEISLGREGGTSPIEMAEKVVGYLDNKGY 197 (200)
T ss_dssp SCSEEECCSSCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEecCCCCCHHHHHHHHHHHHHHcCC
Confidence 123567765 5999999999999987653
No 84
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.16 E-value=5.9e-10 Score=97.57 Aligned_cols=41 Identities=15% Similarity=0.125 Sum_probs=36.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~ 116 (277)
.++++|+|.|++||||||+|+.|++++|+.+++.|++++..
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~ 47 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIA 47 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHH
Confidence 46789999999999999999999999999999999998764
No 85
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=99.15 E-value=2e-12 Score=109.83 Aligned_cols=164 Identities=16% Similarity=0.126 Sum_probs=84.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChh-HHHHHHHHhc--cccchHHHHHHHHH--H-----
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSL-HKQIANAVNR--GEVVSEDIIFGLLS--K----- 148 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~l-g~~i~~~l~~--G~~ip~~~~~~ll~--~----- 148 (277)
+.|+|+|++||||||+++.|++.++...+++. +++. ...+++. +..++..+.. |...++.....++. .
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~-~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA-TLAF-PRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAV 78 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEE-EEES-SEEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHHEEH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE-EEee-cCCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHhhhH
Confidence 47899999999999999999999854322221 0010 0001111 2223333221 11111111111111 1
Q ss_pred -HHHcCCccCccEEEEcCccCCH--HHH------------HHHHhh-------cCcCEEEEecCCHHHHHHhhcchHH--
Q 023790 149 -RLEDGYYRGEIGFILDGLPRSR--IQA------------EILDQL-------AEIDLVVNFKCADNFIVTNRGGSLK-- 204 (277)
Q Consensus 149 -~l~~~~~~~~~g~IldGfPrt~--~qa------------e~l~~~-------~~~d~vI~L~~~~e~l~~Rl~~~~~-- 204 (277)
.+... ...+..+|+|+++.+. .|. +.+... ..+|.+|+|++|++++.+|+..+-.
T Consensus 79 ~~i~~~-l~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~ 157 (214)
T 1gtv_A 79 HTIQGL-CRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRD 157 (214)
T ss_dssp HHHHHE-EEEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHHHEB
T ss_pred HHHHHH-hhCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHcccccc
Confidence 12211 1234668889998653 121 222221 2689999999999999999843211
Q ss_pred -----HHH---HHHHHhchhHH-HHHHhc--CcEEEEeCCCCHHHHHHHHHH
Q 023790 205 -----EKL---EAYAELGKPLE-DYYQKQ--KKLLEFQVGSAPLETWQGLLT 245 (277)
Q Consensus 205 -----~rl---~~y~~~~~~l~-~~y~~~--~~li~Ida~~s~eev~~~I~~ 245 (277)
.++ ..|.+...... +..+.. ..+++||+++++++++++|.+
T Consensus 158 ~~~~~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~vId~~~~~~~v~~~i~~ 209 (214)
T 1gtv_A 158 PGRARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAATLAP 209 (214)
T ss_dssp BEEEEEEEEEEHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEBHHHHHHHHC-
T ss_pred cccccccccccHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHhcC
Confidence 010 12332222211 111111 356789999999999998854
No 86
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.14 E-value=7e-11 Score=103.99 Aligned_cols=118 Identities=11% Similarity=0.049 Sum_probs=69.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC--CCccchhHHHHHhcCCC----ChhHHHHHHHHhccccchHHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE--VPRISMSSIVRQDLSPR----SSLHKQIANAVNRGEVVSEDIIFGLLSKR 149 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g--~~~Is~~dllr~~~~~~----~~lg~~i~~~l~~G~~ip~~~~~~ll~~~ 149 (277)
.++..|+|+|+|||||||+|+.|+++++ ..+++. |.+|...... ...|..+.++... ....++..++...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~-D~~r~~~~~~~~i~~~~g~~~~~~~~~---~~~~~~~~~~~~~ 105 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDG-DSFRSQHPHYLELQQEYGKDSVEYTKD---FAGKMVESLVTKL 105 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECG-GGGGTTSTTHHHHHTTCSSTTHHHHHH---HHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEec-HHHHHhchhHHHHHHHcCchHHHHhhH---HHHHHHHHHHHHH
Confidence 5678999999999999999999999987 445555 4555433210 0011111111110 0112222333332
Q ss_pred HHcCCccCccEEEEcCccCCHHHHHHHHhh---cCc-CEEEEecCCHHHHHHhhcch
Q 023790 150 LEDGYYRGEIGFILDGLPRSRIQAEILDQL---AEI-DLVVNFKCADNFIVTNRGGS 202 (277)
Q Consensus 150 l~~~~~~~~~g~IldGfPrt~~qae~l~~~---~~~-d~vI~L~~~~e~l~~Rl~~~ 202 (277)
+. .+.+||+||++++..+...+... .+. -.++++++|++++.+|...+
T Consensus 106 ~~-----~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R 157 (253)
T 2p5t_B 106 SS-----LGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIR 157 (253)
T ss_dssp HH-----TTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHH
T ss_pred Hh-----cCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHH
Confidence 32 24579999999877664444322 122 24668899999999998443
No 87
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.13 E-value=1.9e-10 Score=103.51 Aligned_cols=115 Identities=9% Similarity=0.048 Sum_probs=72.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh--CCCccchhHHHHHhcCCCChhHHHHHHHHhcc----ccchHHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL--EVPRISMSSIVRQDLSPRSSLHKQIANAVNRG----EVVSEDIIFGLLSKR 149 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~--g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G----~~ip~~~~~~ll~~~ 149 (277)
.++..|+|.|+|||||||+|+.|++++ ++.+||. |.+|..... ....+....... ......+....+...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~-D~~R~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~ 106 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN-DTFKQQHPN---FDELVKLYEKDVVKHVTPYSNRMTEAIISRL 106 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT-HHHHTTSTT---HHHHHHHHGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec-hHhHHhchh---hHHHHHHccchhhhhhhHHHHHHHHHHHHHH
Confidence 578899999999999999999999998 7888987 455544322 111111111000 011122233444444
Q ss_pred HHcCCccCccEEEEcCccCCHHHHHHHHhh----cCcCEEEEecCCHHHH----HHhh
Q 023790 150 LEDGYYRGEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFI----VTNR 199 (277)
Q Consensus 150 l~~~~~~~~~g~IldGfPrt~~qae~l~~~----~~~d~vI~L~~~~e~l----~~Rl 199 (277)
+.. +..+|+|+.+....+...+.+. .....+++|.+|++++ .+|+
T Consensus 107 l~~-----g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl 159 (287)
T 1gvn_B 107 SDQ-----GYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERY 159 (287)
T ss_dssp HHH-----TCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHH
T ss_pred Hhc-----CCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHH
Confidence 443 4679999998876654343221 1233579999999999 7776
No 88
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.12 E-value=5.2e-10 Score=110.55 Aligned_cols=165 Identities=15% Similarity=0.099 Sum_probs=93.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh---CCCccchh-HHHHHhcCCCChhHHHHH-HHHhccccchHHHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMS-SIVRQDLSPRSSLHKQIA-NAVNRGEVVSEDIIFGLLSKRL 150 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~---g~~~Is~~-dllr~~~~~~~~lg~~i~-~~l~~G~~ip~~~~~~ll~~~l 150 (277)
.+++.|+|+|.|||||||+|+.|++++ |+.++.++ |.+|..+.....+...-+ +.+ .. +.+++...+
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~-------r~-i~eva~~~l 121 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENV-------RR-IAEVAKLFA 121 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHH-------HH-HHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHH-------HH-HHHHHHHHH
Confidence 478899999999999999999999999 98887764 667664432211110000 000 01 122222222
Q ss_pred HcCCccCccEEEEcC-ccCC--HHHHHHH-HhhcCcCEEEEecCCHHHHHHhhcchHHH--HHHHHHHhchhHHHHHHhc
Q 023790 151 EDGYYRGEIGFILDG-LPRS--RIQAEIL-DQLAEIDLVVNFKCADNFIVTNRGGSLKE--KLEAYAELGKPLEDYYQKQ 224 (277)
Q Consensus 151 ~~~~~~~~~g~IldG-fPrt--~~qae~l-~~~~~~d~vI~L~~~~e~l~~Rl~~~~~~--rl~~y~~~~~~l~~~y~~~ 224 (277)
.. +..+|.++ .|.. ......+ .....++++|+|++|.+++.+|+....-+ |-... .....+...|+..
T Consensus 122 ~~-----G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~aR~~~~-~~~~~~~~~Ye~p 195 (630)
T 1x6v_B 122 DA-----GLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEI-KGFTGIDSEYEKP 195 (630)
T ss_dssp HT-----TCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHHHTTC-----CBTTTBCCCCC
T ss_pred hC-----CCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchhhhhhhH-HHHHHhhhhhccc
Confidence 22 33444452 2211 1222222 22234678999999999999998532211 11011 1112233344421
Q ss_pred -CcEEEEeCC-CCHHHHHHHHHHHHHHccccc
Q 023790 225 -KKLLEFQVG-SAPLETWQGLLTALHLQHINA 254 (277)
Q Consensus 225 -~~li~Ida~-~s~eev~~~I~~~L~~~~~~~ 254 (277)
..-+.||++ .++++++++|.+.|...++.+
T Consensus 196 ~~~dlvIDts~~s~eevv~~Il~~L~~~~~ip 227 (630)
T 1x6v_B 196 EAPELVLKTDSCDVNDCVQQVVELLQERDIVP 227 (630)
T ss_dssp SSCSEEEETTSSCHHHHHHHHHHHHHHTTSSC
T ss_pred CCCcEEEECCCCCHHHHHHHHHHHHHhcCccc
Confidence 122678876 699999999999998876544
No 89
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.10 E-value=6.9e-10 Score=104.80 Aligned_cols=99 Identities=11% Similarity=-0.045 Sum_probs=72.3
Q ss_pred cCCCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcC
Q 023790 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDG 153 (277)
Q Consensus 74 ~~~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~ 153 (277)
.+..+..|+|+|+|||||||+|+.|++.+|+.+|+.|++ + .. ......+...+..
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~-------~~----------------~~~~~~~~~~l~~- 308 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL-G-------SW----------------QRCVSSCQAALRQ- 308 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS-C-------SH----------------HHHHHHHHHHHHT-
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH-H-------HH----------------HHHHHHHHHHHhc-
Confidence 345678999999999999999999999999999999765 1 01 1122233334443
Q ss_pred CccCccEEEEcCccCCHHHHHHHHhh----cCcCEEEEecCCHHHHHHhhcc
Q 023790 154 YYRGEIGFILDGLPRSRIQAEILDQL----AEIDLVVNFKCADNFIVTNRGG 201 (277)
Q Consensus 154 ~~~~~~g~IldGfPrt~~qae~l~~~----~~~d~vI~L~~~~e~l~~Rl~~ 201 (277)
+..+|+|+...+..+.+.+... ...-.+|+|+++.+++.+|+..
T Consensus 309 ----g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~ 356 (416)
T 3zvl_A 309 ----GKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRF 356 (416)
T ss_dssp ----TCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHH
T ss_pred ----CCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHh
Confidence 4679999988877665554332 2344799999999999999843
No 90
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.10 E-value=4.3e-10 Score=109.82 Aligned_cols=162 Identities=17% Similarity=0.109 Sum_probs=91.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCC-----CccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV-----PRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRL 150 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~-----~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l 150 (277)
+.++.|+|+|+|||||||+|+.|+++++. .+++. |.+++.+..+..+...-+.. .+ +.+...+...+
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~-D~ir~~l~~~~~f~~~er~~-----~l--~~i~~~~~~~l 441 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDG-DVVRTHLSRGLGFSKEDRIT-----NI--LRVGFVASEIV 441 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECH-HHHHHHTCTTCCSSHHHHHH-----HH--HHHHHHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECc-hHhhhhhcccccccHHHHHH-----HH--HHHHHHHHHHH
Confidence 34688999999999999999999998863 56665 55666554322111110000 00 01112222222
Q ss_pred HcCCccCccEEEEcCccCCHHHHHHHHhh-cCcC-EEEEecCCHHHHHHhhcchHH--HHHHHHHHhchhHHHHHHh-cC
Q 023790 151 EDGYYRGEIGFILDGLPRSRIQAEILDQL-AEID-LVVNFKCADNFIVTNRGGSLK--EKLEAYAELGKPLEDYYQK-QK 225 (277)
Q Consensus 151 ~~~~~~~~~g~IldGfPrt~~qae~l~~~-~~~d-~vI~L~~~~e~l~~Rl~~~~~--~rl~~y~~~~~~l~~~y~~-~~ 225 (277)
. .+.++|+|+........+.+.+. ..++ .+|+|++|.+++.+|+....- .+........ .+.+.|.. ..
T Consensus 442 ~-----~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~r~~~~~~~~~~i~~~~-~vr~~~e~~~~ 515 (546)
T 2gks_A 442 K-----HNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDVKGLYKKAKEGLIKGFT-GVDDPYEPPVA 515 (546)
T ss_dssp H-----TTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCCSSHHHHC------CCB-TTTBCCCCCSS
T ss_pred h-----CCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhhccccccccHHHHHHHH-hhhhccccccC
Confidence 2 35689999643323222333332 2357 899999999999999853221 1111111111 01111211 11
Q ss_pred cEEEEeCC-CCHHHHHHHHHHHHHHcc
Q 023790 226 KLLEFQVG-SAPLETWQGLLTALHLQH 251 (277)
Q Consensus 226 ~li~Ida~-~s~eev~~~I~~~L~~~~ 251 (277)
.-++||++ .++++++++|.+.|...+
T Consensus 516 adivIDts~~s~eev~~~I~~~L~~~g 542 (546)
T 2gks_A 516 PEVRVDTTKLTPEESALKILEFLKKEG 542 (546)
T ss_dssp CSEEEETTTSCHHHHHHHHHHHHHHHT
T ss_pred CcEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 23678875 899999999999998754
No 91
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=99.04 E-value=7.8e-10 Score=95.83 Aligned_cols=67 Identities=9% Similarity=-0.009 Sum_probs=32.0
Q ss_pred cCcCEEEEecCCHHHHHHhhcch-----------HHHHHHHHHHhchhHHHHH--HhcCcEEEEeCCCCHHHHHHHHHHH
Q 023790 180 AEIDLVVNFKCADNFIVTNRGGS-----------LKEKLEAYAELGKPLEDYY--QKQKKLLEFQVGSAPLETWQGLLTA 246 (277)
Q Consensus 180 ~~~d~vI~L~~~~e~l~~Rl~~~-----------~~~rl~~y~~~~~~l~~~y--~~~~~li~Ida~~s~eev~~~I~~~ 246 (277)
..||++|+|++|++++++|+.++ +.+|+..+... ....| ...+.+++||+++++++|+++|.++
T Consensus 145 ~~pD~vi~Ld~~~e~~~~Ri~~R~r~~e~~~~~~~~~rv~~~~~~---~~~~~~~~~~~~~~vId~~~~~eev~~~I~~~ 221 (230)
T 2vp4_A 145 VQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHED---WLIHQRRPQSCKVLVLDADLNLENIGTEYQRS 221 (230)
T ss_dssp CCCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHH---HHTSCCSSCCCEEEEEECCC------------
T ss_pred CCCCEEEEEeCCHHHHHHHHHHcCCcccccCcHHHHHHHHHHHHH---HHHHhcccCCCCEEEEECCCCHHHHHHHHHHH
Confidence 36999999999999999998321 22233221111 11111 2234688999999999999999998
Q ss_pred HHH
Q 023790 247 LHL 249 (277)
Q Consensus 247 L~~ 249 (277)
+..
T Consensus 222 l~~ 224 (230)
T 2vp4_A 222 ESS 224 (230)
T ss_dssp ---
T ss_pred HHH
Confidence 864
No 92
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=98.96 E-value=8e-10 Score=96.18 Aligned_cols=69 Identities=13% Similarity=0.039 Sum_probs=43.4
Q ss_pred CcCEEEEecCCHHHHHHhhcchH--HHH--HHHHHHhch-hHHHHHH-----------hcCcEEEEeCCCCHHHHHHHHH
Q 023790 181 EIDLVVNFKCADNFIVTNRGGSL--KEK--LEAYAELGK-PLEDYYQ-----------KQKKLLEFQVGSAPLETWQGLL 244 (277)
Q Consensus 181 ~~d~vI~L~~~~e~l~~Rl~~~~--~~r--l~~y~~~~~-~l~~~y~-----------~~~~li~Ida~~s~eev~~~I~ 244 (277)
.||++|+|++|++++.+|+.++- ..+ -..|.+... ....++. ....+++||++.+++++.+.+.
T Consensus 149 ~pd~~i~l~~~~~~~~~R~~~R~r~~e~~~~~~~~~~v~~~y~~~~~~~~~p~~~~~~~~~~~~~Id~~~~~~~v~~~i~ 228 (241)
T 2ocp_A 149 TLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEVTKQE 228 (241)
T ss_dssp CCCEEEEEECCHHHHHHHHHHSCCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTGGGCCEEEEECCSCTTTCHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHHHHhhccccccccccCCCCEEEEECCCChhhCHHHHH
Confidence 69999999999999999983210 000 011222111 1122221 2457899999999988888887
Q ss_pred HHHHH
Q 023790 245 TALHL 249 (277)
Q Consensus 245 ~~L~~ 249 (277)
.++..
T Consensus 229 ~i~~~ 233 (241)
T 2ocp_A 229 DLMRE 233 (241)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77764
No 93
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.90 E-value=7.8e-09 Score=101.44 Aligned_cols=162 Identities=13% Similarity=0.081 Sum_probs=87.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC----C--CccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE----V--PRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKR 149 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g----~--~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~ 149 (277)
.+++.|+|+|+|||||||+|+.|+++++ . .+++. |.++..+..+......-+. +.+ ..+..+++..
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~-D~ir~~l~~~~~f~~~er~-----~~i--~ri~~v~~~~ 465 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG-DTVRHELSSELGFTREDRH-----TNI--QRIAFVATEL 465 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH-HHHHHHTCTTCCCSHHHHH-----HHH--HHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc-HHHHHHhccccCCChhHHH-----HHH--HHHHHHHHHH
Confidence 4568999999999999999999999976 3 35554 5566554322111100000 000 0111223222
Q ss_pred HHcCCccCccEEEEcCccCCHHHHHHHHhh---cCcCEEEEecCCHHHHHHhhcchHHHHHHHHHHhch---hHHHHHHh
Q 023790 150 LEDGYYRGEIGFILDGLPRSRIQAEILDQL---AEIDLVVNFKCADNFIVTNRGGSLKEKLEAYAELGK---PLEDYYQK 223 (277)
Q Consensus 150 l~~~~~~~~~g~IldGfPrt~~qae~l~~~---~~~d~vI~L~~~~e~l~~Rl~~~~~~rl~~y~~~~~---~l~~~y~~ 223 (277)
+. .+..+|.+..-......+.+.+. ....++|+|++|.+++.+|....+.++-. ....+ ...+.|..
T Consensus 466 ~~-----~g~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~r~l~~~~~--~~~i~~~~~~r~~~~~ 538 (573)
T 1m8p_A 466 TR-----AGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRGIYAAAR--RGEIKGFTGVDDPYET 538 (573)
T ss_dssp HH-----TTCEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSCHHHHHH--TTSSSSCBTTTBCCCC
T ss_pred Hh-----CCCEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhcccchhhhh--HHHHHHHHhccccccc
Confidence 22 23456666322111111222221 12458999999999999997543321110 00011 11111221
Q ss_pred -cCcEEEEeCC-CCHHHHHHHHHHHHHHccc
Q 023790 224 -QKKLLEFQVG-SAPLETWQGLLTALHLQHI 252 (277)
Q Consensus 224 -~~~li~Ida~-~s~eev~~~I~~~L~~~~~ 252 (277)
...-+.||++ .++++++++|.+.|..+++
T Consensus 539 p~~~dl~IDts~~s~eevv~~Il~~l~~~~~ 569 (573)
T 1m8p_A 539 PEKADLVVDFSKQSVRSIVHEIILVLESQGF 569 (573)
T ss_dssp CSSCSEEECTTTSCHHHHHHHHHHHHHHTTT
T ss_pred cCCCCEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 1123678876 5999999999999987654
No 94
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.85 E-value=2.2e-09 Score=104.27 Aligned_cols=135 Identities=16% Similarity=0.254 Sum_probs=77.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCc-----cchhHHHHHhcCCCChhHHHHHHHHh-ccc---cchHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPR-----ISMSSIVRQDLSPRSSLHKQIANAVN-RGE---VVSEDIIFGLL 146 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~-----Is~~dllr~~~~~~~~lg~~i~~~l~-~G~---~ip~~~~~~ll 146 (277)
..+..|+|+|.|||||||+|+.|++.+++.+ ++.|++.++....... .+++. .++ ...+.+....+
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~-----~~~f~~~~~~~~~~re~~~~~~l 107 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSS-----YNFFRPDNEEAMKVRKQCALAAL 107 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCC-----GGGGCTTCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCcc-----ccccCcccHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999986554 5778866554322110 01111 000 00111222222
Q ss_pred H---HHHHcCCccCccEEEEcCccCCHHHHHHHHhh---cCc-CEEEEecCC-HHHHHHhhc------------------
Q 023790 147 S---KRLEDGYYRGEIGFILDGLPRSRIQAEILDQL---AEI-DLVVNFKCA-DNFIVTNRG------------------ 200 (277)
Q Consensus 147 ~---~~l~~~~~~~~~g~IldGfPrt~~qae~l~~~---~~~-d~vI~L~~~-~e~l~~Rl~------------------ 200 (277)
. ..+.. ..+..+|+|+...+..+.+.+.+. ... -++|++.|+ ++++.+|+.
T Consensus 108 ~~~~~~L~~---~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~~rPdl~~~d~e~~~ 184 (520)
T 2axn_A 108 RDVKSYLAK---EGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISSPDYKDCNSAEAM 184 (520)
T ss_dssp HHHHHHHHH---SCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTTTSGGGTTSCHHHHH
T ss_pred HHHHHHHHh---cCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhhcCCccccCCHHHHH
Confidence 2 22211 136789999988887765554332 122 356777777 666667761
Q ss_pred chHHHHHHHHHHhchhHH
Q 023790 201 GSLKEKLEAYAELGKPLE 218 (277)
Q Consensus 201 ~~~~~rl~~y~~~~~~l~ 218 (277)
+.+.+|++.|+...+++.
T Consensus 185 ~~~~~Ri~~y~~~Yepi~ 202 (520)
T 2axn_A 185 DDFMKRISCYEASYQPLD 202 (520)
T ss_dssp HHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHhhhhhhcccC
Confidence 123466677776666653
No 95
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.77 E-value=3.8e-08 Score=82.57 Aligned_cols=159 Identities=8% Similarity=0.038 Sum_probs=69.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh-CCCccchhHHHHHhcC---CCCh----hHHHHHHHHhccccchHH--------
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQDLS---PRSS----LHKQIANAVNRGEVVSED-------- 140 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~-g~~~Is~~dllr~~~~---~~~~----lg~~i~~~l~~G~~ip~~-------- 140 (277)
++..|+|+|++||||||+++.|++.+ ....+..+...+.... .+.. -.......+..|..+...
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 84 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYYG 84 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeecC
Confidence 57789999999999999999999986 2111122111111000 0000 011222222222221100
Q ss_pred HHHHHHHHHHHcCCccCccEEEEcCccCCHHHHHHHHhhcCcCE-EEEec-CCHHHHHHhhcch-------HHHHHHHHH
Q 023790 141 IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDL-VVNFK-CADNFIVTNRGGS-------LKEKLEAYA 211 (277)
Q Consensus 141 ~~~~ll~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~~~~~d~-vI~L~-~~~e~l~~Rl~~~-------~~~rl~~y~ 211 (277)
...+.+...+.. +..+|+|+.+....+ +.... ++. +|++. ++.+++.+|+..+ +.+|+..+.
T Consensus 85 ~~~~~i~~~l~~-----g~~vv~d~~~~~~~~---~~~~~-~~~~~i~~~~~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~ 155 (207)
T 2j41_A 85 TPVQYVKDTMDE-----GHDVFLEIEVEGAKQ---VRKKF-PDALFIFLAPPSLEHLRERLVGRGTESDEKIQSRINEAR 155 (207)
T ss_dssp EEHHHHHHHHHT-----TCEEEEECCGGGHHH---HHHHC-TTSEEEEEECCC---------------------------
T ss_pred CCHHHHHHHHHc-----CCeEEEEECHHHHHH---HHHhc-CCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 001223333332 467899986554333 32222 353 33333 5678999998432 233444332
Q ss_pred HhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHHcc
Q 023790 212 ELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHLQH 251 (277)
Q Consensus 212 ~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~~~ 251 (277)
.. ..++...+ ++ |+.+ ++++++++|.+++....
T Consensus 156 ~~----~~~~~~~d-~v-I~n~-~~e~~~~~i~~~l~~~~ 188 (207)
T 2j41_A 156 KE----VEMMNLYD-YV-VVND-EVELAKNRIQCIVEAEH 188 (207)
T ss_dssp CG----GGGGGGCS-EE-EECS-SHHHHHHHHHHHHHHHH
T ss_pred HH----HhccccCC-EE-EECC-CHHHHHHHHHHHHHHhh
Confidence 22 12233333 33 3434 89999999999997653
No 96
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.77 E-value=2.4e-08 Score=83.82 Aligned_cols=159 Identities=13% Similarity=0.081 Sum_probs=83.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcC---CCCh----hHHHHHHHHhcccc------------c
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS---PRSS----LHKQIANAVNRGEV------------V 137 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~---~~~~----lg~~i~~~l~~G~~------------i 137 (277)
.+..|.|+||+||||||+++.|+..+.-.+++..++-+.... .+.. -..........+.. .
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYGT 85 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEE
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccccc
Confidence 567899999999999999999998764222222111111000 0000 00111111111110 0
Q ss_pred hHHHHHHHHHHHHHcCCccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhc-------chHHHHHHHH
Q 023790 138 SEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG-------GSLKEKLEAY 210 (277)
Q Consensus 138 p~~~~~~ll~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~-------~~~~~rl~~y 210 (277)
+. ..+.+.+.. +..+|+|+.+....+... ....+..++....+.+++.+|+. +.+++|+..+
T Consensus 86 ~~----~~i~~~l~~-----g~~vi~d~~~~~~~~~~~--~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~ 154 (205)
T 3tr0_A 86 EK----DWVLRQLKA-----GRDVLLEIDWQGARQIRE--LFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALA 154 (205)
T ss_dssp EH----HHHHHHHHT-----TCEEEEECCHHHHHHHHH--HCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHH
T ss_pred hH----HHHHHHHHc-----CCeEEEEECHHHHHHHHH--hCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 11 123333333 456888976544433221 12233344444557999999983 3467777665
Q ss_pred HHhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHHcccc
Q 023790 211 AELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHLQHIN 253 (277)
Q Consensus 211 ~~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~~~~~ 253 (277)
... ..++...+ .+.+| + +++++.++|.+++......
T Consensus 155 ~~~----~~~~~~~d-~vi~n-~-~~~~~~~~l~~~i~~~~~~ 190 (205)
T 3tr0_A 155 REE----MAHYKEFD-YLVVN-D-NFDQAVQNLIHIISAERLQ 190 (205)
T ss_dssp HHH----HTTGGGCS-EEEEC-S-SHHHHHHHHHHHHHHHTTS
T ss_pred HHH----HhcccCCC-EEEEC-C-CHHHHHHHHHHHHHHHHhh
Confidence 433 22233333 33334 3 8999999999999865443
No 97
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.68 E-value=5.8e-08 Score=85.45 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=32.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHH
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV 113 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dll 113 (277)
+.|+|+|+|||||||+|+.|+++++..++++|++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~ 36 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQ 36 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHh
Confidence 57899999999999999999999999999998764
No 98
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.67 E-value=4.7e-07 Score=76.96 Aligned_cols=161 Identities=11% Similarity=0.087 Sum_probs=82.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCC-CccchhHHHHHhcC---CCCh----hHHHHHHHHhccccchH--------
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV-PRISMSSIVRQDLS---PRSS----LHKQIANAVNRGEVVSE-------- 139 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~-~~Is~~dllr~~~~---~~~~----lg~~i~~~l~~G~~ip~-------- 139 (277)
.++..|+|+||+||||||+++.|++.+.- ........-|.... .+.. -.......+..+..+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~y 85 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYY 85 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccC
Confidence 36778999999999999999999998742 11111100000000 0000 01112222222221100
Q ss_pred HHHHHHHHHHHHcCCccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCC-HHHHHHhhc-------chHHHHHHHHH
Q 023790 140 DIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCA-DNFIVTNRG-------GSLKEKLEAYA 211 (277)
Q Consensus 140 ~~~~~ll~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~-~e~l~~Rl~-------~~~~~rl~~y~ 211 (277)
......+.+.+.. +..+|+|..+.... .+........+|++..+ .+++.+|+. +.+++|++...
T Consensus 86 g~~~~~i~~~l~~-----g~~vild~~~~g~~---~~~~~~~~~~~i~i~~ps~~~l~~Rl~~R~~~~~e~i~~Rl~~~~ 157 (208)
T 3tau_A 86 GTPLEYVEEKLAA-----GVDIFLEIEVQGAM---QVRKAMPEGIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAK 157 (208)
T ss_dssp EEEHHHHHHHHHT-----TCCEEEECCHHHHH---HHHHHCTTSEEEEEECTTTTTSSCC-------CCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHc-----CCeEEEEeeHHHHH---HHHHhCCCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 0001223333343 46788887543332 23222222356666655 888989883 34667776544
Q ss_pred HhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHHcc
Q 023790 212 ELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHLQH 251 (277)
Q Consensus 212 ~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~~~ 251 (277)
... .++...+ .+.+| .+.+++.++|.+++....
T Consensus 158 ~e~----~~~~~~d-~vivN--~~~~~~~~~l~~~i~~~~ 190 (208)
T 3tau_A 158 KEI----EMMASYD-YAVVN--DVVANAVQKIKGIVETEH 190 (208)
T ss_dssp HHH----HHGGGSS-EEEEC--SSHHHHHHHHHHHHHHHH
T ss_pred HHH----HhhccCC-EEEEC--cCHHHHHHHHHHHHHHHH
Confidence 321 2233333 33444 369999999999998654
No 99
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.64 E-value=2.2e-08 Score=83.28 Aligned_cols=162 Identities=15% Similarity=0.094 Sum_probs=86.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCC--ccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcC
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP--RISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDG 153 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~--~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~ 153 (277)
..+..|+|+|+|||||||+++.|+..++.. +++.+++.... ..+...+ ++.... .+...+.+.+.......
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~-~~~~~~~-----~~~~~~-~~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYI-KHGRIDP-----WLPQSH-QQNRMIMQIAADVAGRY 79 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTC-CSSCCCT-----TSSSHH-HHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhh-hcccccC-----Cccchh-hhhHHHHHHHHHHHHHH
Confidence 367889999999999999999999987554 77777765432 1111000 000000 01111222221111100
Q ss_pred CccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhcch----H--HHHHHHHHHhchhHHHHHHhcCcE
Q 023790 154 YYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRGGS----L--KEKLEAYAELGKPLEDYYQKQKKL 227 (277)
Q Consensus 154 ~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~~~----~--~~rl~~y~~~~~~l~~~y~~~~~l 227 (277)
...+..+++|++.... ..+.+......-.++++.++.+++++|+..+ + ....+...+...++.. |. ..
T Consensus 80 -~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~lld~~~~~~~~~~~~~l~~-~~--~~- 153 (191)
T 1zp6_A 80 -AKEGYFVILDGVVRPD-WLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSLSDPLVVADLHSQFADLGA-FE--HH- 153 (191)
T ss_dssp -HHTSCEEEECSCCCTT-TTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSCCCHHHHHHHHHHTTCCGG-GG--GG-
T ss_pred -hccCCeEEEeccCcHH-HHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCccCCHHHHHHHHHHHhccCc-cc--cc-
Confidence 0123457888865432 1222322122235899999999999998321 1 1222222223333321 11 12
Q ss_pred EEEeCC-CCHHHHHHHHHHHHHHcc
Q 023790 228 LEFQVG-SAPLETWQGLLTALHLQH 251 (277)
Q Consensus 228 i~Ida~-~s~eev~~~I~~~L~~~~ 251 (277)
.|+++ .++++++++|.+.+....
T Consensus 154 -~i~t~~~~~~~~~~~i~~~l~~~~ 177 (191)
T 1zp6_A 154 -VLPVSGKDTDQALQSAINALQSGR 177 (191)
T ss_dssp -EEECTTCCTTTTTTTTHHHHHHTT
T ss_pred -EEECCCCCHHHHHHHHHHHHHhhh
Confidence 34554 789999999999987653
No 100
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.59 E-value=9.8e-07 Score=73.26 Aligned_cols=113 Identities=11% Similarity=-0.039 Sum_probs=60.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCC-CccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCcc
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEV-PRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~-~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~~ 156 (277)
+..++|+|++||||||+++.|++.++. .+++.+++.+.. ..+.-. +.. ...+...+.+.+....... ..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~-~~~~~~-~~~-------~~~~~~~~~~~l~~~~~~~-~~ 71 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMV-VGGYRP-PWE-------SDELLALTWKNITDLTVNF-LL 71 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTC-CTTCCC-GGG-------CHHHHHHHHHHHHHHHHHH-HH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhh-cccccc-Ccc-------chhHHHHHHHHHHHHHHHH-Hh
Confidence 457899999999999999999998765 678876664321 111000 000 0001111112221111110 01
Q ss_pred CccEEEEcCccCCHHHHHHHHhh----c-C-cCEEEEecCCHHHHHHhhcc
Q 023790 157 GEIGFILDGLPRSRIQAEILDQL----A-E-IDLVVNFKCADNFIVTNRGG 201 (277)
Q Consensus 157 ~~~g~IldGfPrt~~qae~l~~~----~-~-~d~vI~L~~~~e~l~~Rl~~ 201 (277)
.+..+|+|++- .....+.+... . . .-.+++|.++.+++.+|...
T Consensus 72 ~~~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~ 121 (189)
T 2bdt_A 72 AQNDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDAL 121 (189)
T ss_dssp TTCEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTT
T ss_pred cCCcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHh
Confidence 23468899852 22222222221 1 1 23468899999999999843
No 101
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.54 E-value=2.2e-07 Score=90.78 Aligned_cols=159 Identities=17% Similarity=0.157 Sum_probs=71.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC------CCccchhHHHHHhcCCCChhHH-HHHHHHhccccchHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE------VPRISMSSIVRQDLSPRSSLHK-QIANAVNRGEVVSEDIIFGLLSK 148 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g------~~~Is~~dllr~~~~~~~~lg~-~i~~~l~~G~~ip~~~~~~ll~~ 148 (277)
.++..|+|+|++||||||+++.|+..++ +.+++.+++.. .+..+..+.. ...... ..+ ..+..
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~-~l~~~l~f~~~~r~~~~--------r~i-~~v~q 436 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR-HLSSELGFSKAHRDVNV--------RRI-GFVAS 436 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH-HTTSSCCCSHHHHHHHH--------HHH-HHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH-hhccccCCCHHHHHHHH--------HHH-HHHHH
Confidence 3678999999999999999999999884 33566655543 2211111000 000000 001 11111
Q ss_pred HHHcCCccCccEEEEcC-ccCCHH--HH-HHHHhhcCcCEEEEecCCHHHHHHhhcchH-H-H---HHHHHHHhchhHHH
Q 023790 149 RLEDGYYRGEIGFILDG-LPRSRI--QA-EILDQLAEIDLVVNFKCADNFIVTNRGGSL-K-E---KLEAYAELGKPLED 219 (277)
Q Consensus 149 ~l~~~~~~~~~g~IldG-fPrt~~--qa-e~l~~~~~~d~vI~L~~~~e~l~~Rl~~~~-~-~---rl~~y~~~~~~l~~ 219 (277)
.+.. .+..+|..+ .|.... .+ +.+... ..-.+|+|++|.+++.+|....+ . . .+..+..... .
T Consensus 437 ~l~~----~~~ivi~~~~~~~~~~r~~~r~lL~~~-g~f~~V~L~~~~e~~~~R~~r~l~~~~~~~~i~~l~~~r~---~ 508 (552)
T 3cr8_A 437 EITK----NRGIAICAPIAPYRQTRRDVRAMIEAV-GGFVEIHVATPIETCESRDRKGLYAKARAGLIPEFTGVSD---P 508 (552)
T ss_dssp HHHH----TTCEEEECCCCCCHHHHHHHHHHHHTT-SEEEEEEECC-----------------------------C---C
T ss_pred HHHh----cCCEEEEecCCccHHHHHHHHHHHHHc-CCEEEEEEcCCHHHHHHhccccccccccHhHHHHHHhccc---c
Confidence 2221 133444443 232221 11 222221 22279999999999999974211 1 1 1111111111 1
Q ss_pred HHHhcCcEEEEeCC-CCHHHHHHHHHHHHHHccc
Q 023790 220 YYQKQKKLLEFQVG-SAPLETWQGLLTALHLQHI 252 (277)
Q Consensus 220 ~y~~~~~li~Ida~-~s~eev~~~I~~~L~~~~~ 252 (277)
+|....--+.||++ .++++++++|.+.|...+.
T Consensus 509 ~e~P~~adl~Idt~~~s~~e~v~~Il~~L~~~~~ 542 (552)
T 3cr8_A 509 YEVPETPELAIDTTGLAIDEAVQQILLKLEHEGY 542 (552)
T ss_dssp CCCCSSCSEEECCSSCCHHHHHHHHHHHHHHHTC
T ss_pred ccCCCCCCEEEECCCCCHHHHHHHHHHHHHhcCc
Confidence 23211112556764 7999999999999977543
No 102
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=98.52 E-value=1.3e-07 Score=86.84 Aligned_cols=29 Identities=10% Similarity=-0.075 Sum_probs=26.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~ 104 (277)
.+++.|+|.|+.||||||+++.|+++++.
T Consensus 5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 5 VTIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47899999999999999999999999864
No 103
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.52 E-value=3.4e-07 Score=78.22 Aligned_cols=158 Identities=9% Similarity=0.035 Sum_probs=91.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC---CCccchhHHHHHhcC--CCChh-------------HHHHHHH----Hhcc
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE---VPRISMSSIVRQDLS--PRSSL-------------HKQIANA----VNRG 134 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g---~~~Is~~dllr~~~~--~~~~l-------------g~~i~~~----l~~G 134 (277)
.+++|.|.|.|||||+|+|+.+.+.+| +..++++|.++++.. .+-++ ++.+... ...|
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~d 89 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQAD 89 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhcC
Confidence 456899999999999999999999885 678999999985321 11010 1111100 0000
Q ss_pred ccchHHHHHHHHHHHHHcCCccCccEEEEcCccCCHHHHHHHHhhcCc-CEEEEecCCHHHHHHhhcchHHHHHHHHHHh
Q 023790 135 EVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEI-DLVVNFKCADNFIVTNRGGSLKEKLEAYAEL 213 (277)
Q Consensus 135 ~~ip~~~~~~ll~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~~~~~-d~vI~L~~~~e~l~~Rl~~~~~~rl~~y~~~ 213 (277)
..+ ...++ +.. .....|||||. |....++.|.+..+. -.+|.+.+++++..+|.......+-+ .+.
T Consensus 90 ~~~----~~~~~---~~~---~~~~~vII~dv-R~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg~~~~~~~Dd--~es 156 (202)
T 3ch4_B 90 PGF----FCRKI---VEG---ISQPIWLVSDT-RRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWVFTPGVDD--AES 156 (202)
T ss_dssp TTT----THHHH---SBT---CCCSEEEECCC-CSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTTCCCCTTTTT--SHH
T ss_pred chH----HHHHH---HHh---cCCCcEEEeCC-CCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHhhhccccccc--ccc
Confidence 000 00111 111 12357999997 777788888765332 34799999999999996211110000 000
Q ss_pred chhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 214 GKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 214 ~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
-..+-++ ...+ ++..| +.+.+++.+++..++..-
T Consensus 157 E~gL~~~-~~~D-~vI~N-dgt~eel~~~v~~ll~~~ 190 (202)
T 3ch4_B 157 ECGLDNF-GDFD-WVIEN-HGVEQRLEEQLENLIEFI 190 (202)
T ss_dssp HHTTTTC-CCCS-EEEEE-CSCHHHHHHHHHHHHHHH
T ss_pred ccCCCCC-CcCC-EEEEe-CCCHHHHHHHHHHHHHHH
Confidence 0112111 1122 33344 679999999988877653
No 104
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.47 E-value=5.9e-07 Score=75.85 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=33.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC--CCccchhHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE--VPRISMSSIVR 114 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g--~~~Is~~dllr 114 (277)
.++.+|.|+|++||||||+++.|+..++ +.+++.+..++
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~ 44 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYK 44 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcccc
Confidence 3667899999999999999999999988 88888776543
No 105
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.43 E-value=2.7e-06 Score=70.52 Aligned_cols=159 Identities=16% Similarity=0.118 Sum_probs=76.7
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHhCC-C--ccchhHH-HHH-hcCCCCh----hHHHHHHHHhccccchHH-----
Q 023790 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEV-P--RISMSSI-VRQ-DLSPRSS----LHKQIANAVNRGEVVSED----- 140 (277)
Q Consensus 75 ~~~~~~Ivi~G~pGSGKSTla~~La~~~g~-~--~Is~~dl-lr~-~~~~~~~----lg~~i~~~l~~G~~ip~~----- 140 (277)
|.++..++|+||+||||||+++.|+..+.- . .++.... .+. +. .+.. -...+...+..+..+...
T Consensus 2 ~~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~-~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~n 80 (180)
T 1kgd_A 2 SHMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEE-NGKNYYFVSHDQMMQDISNNEYLEYGSHEDA 80 (180)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CC-BTTTBEECCHHHHHHHHHTTCEEEEEEETTE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCcccc-CCCeeEEeCHHHHHHHHHcCCceEEEEEcCc
Confidence 456788999999999999999999987531 0 0110000 000 00 0000 011122222222221100
Q ss_pred ---HHHHHHHHHHHcCCccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCC-HHHHHHhhcchHHHHHHHHHHhchh
Q 023790 141 ---IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCA-DNFIVTNRGGSLKEKLEAYAELGKP 216 (277)
Q Consensus 141 ---~~~~ll~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~-~e~l~~Rl~~~~~~rl~~y~~~~~~ 216 (277)
.....+.+.+.. +..+|+|.-+.... .+........+|++..| .+.+.+| ++.+ +|+. ....+
T Consensus 81 ~yg~~~~~i~~~l~~-----g~~vil~id~~g~~---~~~~~~~~~~~ifi~~p~~~~l~~R-~~~i-~r~~---~~~~~ 147 (180)
T 1kgd_A 81 MYGTKLETIRKIHEQ-----GLIAILDVEPQALK---VLRTAEFAPFVVFIAAPTITPGLNE-DESL-QRLQ---KESDI 147 (180)
T ss_dssp EEEEEHHHHHHHHHT-----TCEEEEECCGGGHH---HHSSTTTCEEEEEEECCSCCTTSCC-SHHH-HHHH---HHHHH
T ss_pred cccccHHHHHHHHHC-----CCeEEEEECHHHHH---HHHHhCCCcEEEEEECCCHHHHHhh-HHHH-HHHH---HHHHH
Confidence 001122333333 45678875443332 23222223478899886 6666666 4455 3432 22223
Q ss_pred HHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 217 LEDYYQKQKKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 217 l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
+...|...--.+.++ + +.++..+++.+++..
T Consensus 148 ~~~~~~~~~d~~i~n-~-~~~~~~~~l~~~i~~ 178 (180)
T 1kgd_A 148 LQRTYAHYFDLTIIN-N-EIDETIRHLEEAVEL 178 (180)
T ss_dssp HHHHHGGGCSEEEEC-S-SHHHHHHHHHHHHHH
T ss_pred HHHhhhCCCcEEEEC-c-CHHHHHHHHHHHHHH
Confidence 322233222233333 3 799999999998864
No 106
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.34 E-value=6.3e-07 Score=85.59 Aligned_cols=116 Identities=14% Similarity=0.151 Sum_probs=62.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCC-----ccchhHHHHHhcCCCChhHHHHHHHHhc-ccc---chHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP-----RISMSSIVRQDLSPRSSLHKQIANAVNR-GEV---VSEDIIFGLL 146 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~-----~Is~~dllr~~~~~~~~lg~~i~~~l~~-G~~---ip~~~~~~ll 146 (277)
.++.+|+|+|.|||||||+++.|++.++.. .++.+++.++........ +.+.. |+. .-+.+....+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~-----~ifd~~g~~~~r~re~~~~~~l 111 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSF-----EFFLPDNEEGLKIRKQCALAAL 111 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCG-----GGGCTTCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcc-----cccCCCCHHHHHHHHHHHHHHH
Confidence 467889999999999999999999987543 455555444322110000 00110 110 0011112222
Q ss_pred ---HHHHHcCCccCccEEEEcCccCCHHHHHHHHhh-cC-cCEEEEec---CCHHHHHHhh
Q 023790 147 ---SKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL-AE-IDLVVNFK---CADNFIVTNR 199 (277)
Q Consensus 147 ---~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~~-~~-~d~vI~L~---~~~e~l~~Rl 199 (277)
...+.. ..+.++|+|+...+..+.+.+... .. ...+++|+ .+++++.+|+
T Consensus 112 ~~~~~~l~~---~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~ 169 (469)
T 1bif_A 112 NDVRKFLSE---EGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANI 169 (469)
T ss_dssp HHHHHHHHT---TCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHH
T ss_pred HHHHHHHHh---CCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHH
Confidence 223322 246689999987777655554322 11 11356666 4467777776
No 107
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.30 E-value=4.9e-07 Score=83.00 Aligned_cols=36 Identities=11% Similarity=0.142 Sum_probs=32.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dl 112 (277)
+++.|+|+||+||||||++..||++++..+||+|.+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 446899999999999999999999999999998765
No 108
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.29 E-value=2.4e-05 Score=67.89 Aligned_cols=30 Identities=20% Similarity=0.170 Sum_probs=27.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCC
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~ 105 (277)
.++.+|.|.|+.||||||+++.|+..+|..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 577889999999999999999999988865
No 109
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.28 E-value=1.3e-05 Score=66.62 Aligned_cols=158 Identities=9% Similarity=-0.019 Sum_probs=63.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhC----CCccchhHHHHHhcCCCCh----hHHHHHHHHhccccchH--------HHH
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLE----VPRISMSSIVRQDLSPRSS----LHKQIANAVNRGEVVSE--------DII 142 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g----~~~Is~~dllr~~~~~~~~----lg~~i~~~l~~G~~ip~--------~~~ 142 (277)
..++|+||+||||||+++.|+..+. .....+...-+.-...+.. ...........+..+.. ...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~yg~~ 81 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST 81 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCccCCeeeeecCHHHHHHHHhhcceeeEEEEeceeccCc
Confidence 4589999999999999999997653 1111100000000000000 01112222222221100 000
Q ss_pred HHHHHHHHHcCCccCccEEEEcCccCCHHHHHHHHh-hcCcCEEEEecCCH-HHHHHhhcc-------hHHHHHHHHHHh
Q 023790 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQ-LAEIDLVVNFKCAD-NFIVTNRGG-------SLKEKLEAYAEL 213 (277)
Q Consensus 143 ~~ll~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~-~~~~d~vI~L~~~~-e~l~~Rl~~-------~~~~rl~~y~~~ 213 (277)
.+.+...+.. +..+|+|.-+ .-+..+.. ......+|++..|. +++.+|+.+ .+++|++.....
T Consensus 82 ~~~i~~~l~~-----g~~~il~~~~---~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~~~ 153 (186)
T 3a00_A 82 VASVKQVSKS-----GKTCILDIDM---QGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAE 153 (186)
T ss_dssp HHHHHHHHHT-----TCEEEEECCH---HHHHHHHTCGGGCCEEEEEECSCC----------------------------
T ss_pred HHHHHHHHHc-----CCeEEEEEcH---HHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 1223333333 4567787432 22333443 22234678898866 899999843 345555543322
Q ss_pred chhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 214 GKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 214 ~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
+...+....-.+.++ + +.++..++|.+++..
T Consensus 154 ---~~~~~~~~~d~vi~n-d-~~~~a~~~l~~~i~~ 184 (186)
T 3a00_A 154 ---LAYAETGAHDKVIVN-D-DLDKAYKELKDFIFA 184 (186)
T ss_dssp --------CCCCSEEEEC-S-SHHHHHHHHHHHHTT
T ss_pred ---HHhhcccCCcEEEEC-c-CHHHHHHHHHHHHHh
Confidence 211111111234444 2 899999999988853
No 110
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.23 E-value=7.8e-06 Score=70.13 Aligned_cols=27 Identities=22% Similarity=0.124 Sum_probs=18.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHH-HHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLS-KLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La-~~~ 102 (277)
..+..|.|+||+||||||+++.|+ ..+
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 467789999999999999999999 765
No 111
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.21 E-value=1.3e-06 Score=73.61 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++.+|.|+|++||||||+++.|+..+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 577899999999999999999999875
No 112
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.17 E-value=7.9e-06 Score=68.81 Aligned_cols=154 Identities=10% Similarity=-0.001 Sum_probs=80.6
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCC-CccchhHHHHHhcCCCC----h----hHHHHHHHHhccccchHH--------HHH
Q 023790 81 WAFIGSPRAKKHVYAEMLSKLLEV-PRISMSSIVRQDLSPRS----S----LHKQIANAVNRGEVVSED--------IIF 143 (277)
Q Consensus 81 Ivi~G~pGSGKSTla~~La~~~g~-~~Is~~dllr~~~~~~~----~----lg~~i~~~l~~G~~ip~~--------~~~ 143 (277)
|+|+||+||||+|+++.|.+.+.- ..+++...=|.. ..+. . ..+...+.+.+|+.+.-. +..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p-R~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~ 82 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP-RAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTV 82 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC-CTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC-CCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeec
Confidence 899999999999999999887531 112221111110 1111 1 123344445555432210 011
Q ss_pred HHHHHHHHcCCccCccEEEEcCccCCHHHHHHHHhhc--CcCEEEEecCCHHHHHHhh-------cchHHHHHHHHHHhc
Q 023790 144 GLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLA--EIDLVVNFKCADNFIVTNR-------GGSLKEKLEAYAELG 214 (277)
Q Consensus 144 ~ll~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~~~--~~d~vI~L~~~~e~l~~Rl-------~~~~~~rl~~y~~~~ 214 (277)
..+...+.+ +..+|+|.-+... ..+.+.. .+-.++.+--+.+++.+|+ ++.+++|+.......
T Consensus 83 ~~v~~~l~~-----g~~vil~id~~g~---~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~e~~e~i~~Rl~~a~~e~ 154 (186)
T 1ex7_A 83 ASVKQVSKS-----GKTCILDIDMQGV---KSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAEL 154 (186)
T ss_dssp HHHHHHHHH-----TSEEEEECCHHHH---HHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHH
T ss_pred ceeeehhhC-----CCEEEecCCHHHH---HHHHHhcccCceEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 233333443 4678888654332 3333322 2333444555678899998 335777886554332
Q ss_pred hhHHHHHH-hcCcEEEEeCCCCHHHHHHHHHHHHHH
Q 023790 215 KPLEDYYQ-KQKKLLEFQVGSAPLETWQGLLTALHL 249 (277)
Q Consensus 215 ~~l~~~y~-~~~~li~Ida~~s~eev~~~I~~~L~~ 249 (277)
. ..+. ..+ .+.+| .+.++.+++|.+++..
T Consensus 155 ~---~~~~~~fD-~vIvN--ddle~a~~~l~~iI~a 184 (186)
T 1ex7_A 155 A---YAETGAHD-KVIVN--DDLDKAYKELKDFIFA 184 (186)
T ss_dssp H---HHTTTCSS-EEEEC--SSHHHHHHHHHHHHTT
T ss_pred h---hccccCCc-EEEEC--cCHHHHHHHHHHHHHh
Confidence 1 1111 112 33444 4799999999988753
No 113
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=98.14 E-value=8.6e-06 Score=74.85 Aligned_cols=29 Identities=17% Similarity=0.038 Sum_probs=26.2
Q ss_pred CCCeEEEEEcCCCCChHHHH-HHHHHHhCC
Q 023790 76 RRGVHWAFIGSPRAKKHVYA-EMLSKLLEV 104 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla-~~La~~~g~ 104 (277)
.+++.|+|.|+.||||||++ +.|++.++-
T Consensus 10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~ 39 (341)
T 1osn_A 10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAIT 39 (341)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 46789999999999999999 999998764
No 114
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=98.06 E-value=3.5e-05 Score=69.58 Aligned_cols=153 Identities=8% Similarity=0.025 Sum_probs=83.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCc
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~ 155 (277)
..++.|+|.|..||||+|+.++|.+.++-..+.+ ..-..|.+..++. . .+ .+......
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V-------~~~~~Pt~eE~~~------~--------yl-~R~~~~LP 141 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARV-------VALTKPTETERGQ------W--------YF-QRYVATFP 141 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEE-------EECCSCCHHHHTS------C--------TT-HHHHTTCC
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeE-------EEeCCcChHHHhc------h--------HH-HHHHHhcc
Confidence 4689999999999999999999999885432221 0001122222211 1 11 11222111
Q ss_pred cCccEEEEcCccCC------------HH-------HHHHHHhh----cCcCEEEEecCCHHHHHHhhcchHH--------
Q 023790 156 RGEIGFILDGLPRS------------RI-------QAEILDQL----AEIDLVVNFKCADNFIVTNRGGSLK-------- 204 (277)
Q Consensus 156 ~~~~g~IldGfPrt------------~~-------qae~l~~~----~~~d~vI~L~~~~e~l~~Rl~~~~~-------- 204 (277)
..+.-+|.|.+..+ .. +...|++. ..+++.+||+++.++..+|+.++..
T Consensus 142 ~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~dp~k~Wk~ 221 (304)
T 3czq_A 142 TAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRHDPLKIWKL 221 (304)
T ss_dssp CTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHHCTTTGGGC
T ss_pred cCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhcCcccccCC
Confidence 23455666654321 11 12222222 3578999999999999999843211
Q ss_pred --------HHHHHHHHhchhHHHHHH-hcCcEEEEeCCCCH---HHHHHHHHHHHHHc
Q 023790 205 --------EKLEAYAELGKPLEDYYQ-KQKKLLEFQVGSAP---LETWQGLLTALHLQ 250 (277)
Q Consensus 205 --------~rl~~y~~~~~~l~~~y~-~~~~li~Ida~~s~---eev~~~I~~~L~~~ 250 (277)
+.++.|.+....+...-+ ....|++|+++... ..+.+.|++.|...
T Consensus 222 s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk~~arl~v~~~Il~~l~~~ 279 (304)
T 3czq_A 222 SPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDKRRSRINVIRHMLTKLDYD 279 (304)
T ss_dssp CHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHCCCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECCCcchHHHHHHHHHHHHHhhc
Confidence 222333333333322211 12369999988754 55666666666544
No 115
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=98.05 E-value=1e-05 Score=74.13 Aligned_cols=28 Identities=14% Similarity=0.013 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g 103 (277)
.+++.|+|.|+.||||||+++.|+++++
T Consensus 2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 2 PTLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp CEEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred CccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3678999999999999999999999875
No 116
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=98.00 E-value=1.1e-05 Score=75.09 Aligned_cols=28 Identities=14% Similarity=0.013 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g 103 (277)
.+++.|+|.|+.||||||+++.|+++++
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5778999999999999999999999875
No 117
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.92 E-value=3.2e-06 Score=77.22 Aligned_cols=36 Identities=25% Similarity=0.154 Sum_probs=32.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dl 112 (277)
+++.|+|+||+||||||+|..|+++++..+|++|++
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 456899999999999999999999999999999765
No 118
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.78 E-value=3.5e-06 Score=75.66 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=31.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC-----CCccchhHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVR 114 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g-----~~~Is~~dllr 114 (277)
++++|.|.|++||||||+|+.|++.+| +.+|++|++.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 567899999999999999999999887 78899988775
No 119
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=97.77 E-value=1.5e-05 Score=69.80 Aligned_cols=39 Identities=13% Similarity=0.189 Sum_probs=35.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhc
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL 117 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~ 117 (277)
++|.|.|++||||||+++.|++++|++++++++.+++++
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~ 40 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDAL 40 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHH
Confidence 689999999999999999999999999999998887764
No 120
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.76 E-value=0.0001 Score=62.48 Aligned_cols=28 Identities=11% Similarity=0.068 Sum_probs=25.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g 103 (277)
.++..|+|+||+||||||+++.|.+.+.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5677899999999999999999998864
No 121
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=97.73 E-value=0.00026 Score=68.15 Aligned_cols=29 Identities=21% Similarity=0.141 Sum_probs=26.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~ 104 (277)
..++.|+|.|..||||+|+.+.|.+.++=
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~p 69 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDP 69 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCG
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCc
Confidence 57899999999999999999999998853
No 122
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=97.68 E-value=0.00025 Score=68.32 Aligned_cols=149 Identities=9% Similarity=0.021 Sum_probs=84.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCC---CccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHc
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV---PRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLED 152 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~---~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~ 152 (277)
..++.|+|.|..||||+++.++|.+.++= .++.+. .|..... + ...+......
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~----------~Pt~~E~------~--------~~yl~R~~~~ 353 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIA----------APTEEER------A--------QPYLWRFWRH 353 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECC----------SCCHHHH------T--------SCTTHHHHTT
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeC----------CCChhhh------c--------chHHHHHHHh
Confidence 47899999999999999999999998743 333221 1111111 1 1111222222
Q ss_pred CCccCccEEEEcCccCC------------HH-------HHHHHHhh----cCcCEEEEecCCHHHHHHhhcchH------
Q 023790 153 GYYRGEIGFILDGLPRS------------RI-------QAEILDQL----AEIDLVVNFKCADNFIVTNRGGSL------ 203 (277)
Q Consensus 153 ~~~~~~~g~IldGfPrt------------~~-------qae~l~~~----~~~d~vI~L~~~~e~l~~Rl~~~~------ 203 (277)
. ...+.-+|+|....+ .. +...|++. ..+.+.+||+++.++..+|+.++.
T Consensus 354 l-P~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~p~k~ 432 (500)
T 3czp_A 354 I-PARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKTPYKR 432 (500)
T ss_dssp C-CCTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHSSCTT
T ss_pred C-CCCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcCCccc
Confidence 2 123455666754322 11 12222221 357899999999999999984322
Q ss_pred ----------HHHHHHHHHhchhHHHHHHhc-CcEEEEeCCC---CHHHHHHHHHHHHHH
Q 023790 204 ----------KEKLEAYAELGKPLEDYYQKQ-KKLLEFQVGS---APLETWQGLLTALHL 249 (277)
Q Consensus 204 ----------~~rl~~y~~~~~~l~~~y~~~-~~li~Ida~~---s~eev~~~I~~~L~~ 249 (277)
.++.+.|.+........-+.. ..|.+|+++. ....|.+.|.+.|..
T Consensus 433 Wk~s~~D~~~~~~w~~y~~a~~~~l~~T~t~~APW~vI~a~dk~~arl~v~~~i~~~l~~ 492 (500)
T 3czp_A 433 YKITEEDWRNRDKWDQYVDAVGDMVDRTSTEIAPWTLVEANDKRFARVKVLRTINDAIEA 492 (500)
T ss_dssp SCCCSSTTTGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhHHHHHHHHHHHHHHhccCCCCEEEEECCCccchHHHHHHHHHHHHHH
Confidence 133445555444443322222 2599999876 345566666666654
No 123
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.65 E-value=1.7e-05 Score=72.88 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=31.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhHH
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dl 112 (277)
..|+|.||+||||||+|..|++.++..+|++|++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 5899999999999999999999999989998876
No 124
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.58 E-value=2.3e-05 Score=71.26 Aligned_cols=36 Identities=28% Similarity=0.220 Sum_probs=32.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dl 112 (277)
+++.|+|.||+||||||++..|+++++..+||.|.+
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 456899999999999999999999999888888765
No 125
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.55 E-value=3.6e-05 Score=69.80 Aligned_cols=36 Identities=28% Similarity=0.239 Sum_probs=32.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~d 111 (277)
..+..|+|+||+||||||++..|+++++..+|+.|.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 356789999999999999999999999988888765
No 126
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.54 E-value=0.0012 Score=53.83 Aligned_cols=105 Identities=16% Similarity=0.122 Sum_probs=56.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHH----HHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSED----IIFGLLSKRLE 151 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~----~~~~ll~~~l~ 151 (277)
..+-.+.|+|++||||||+++.+.. |...++. +.++..+.... |...... .........+.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~~--~~~~~~~-d~~~g~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 71 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHFK--PTEVISS-DFCRGLMSDDE------------NDQTVTGAAFDVLHYIVSKRLQ 71 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHSC--GGGEEEH-HHHHHHHCSST------------TCGGGHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHcc--CCeEEcc-HHHHHHhcCcc------------cchhhHHHHHHHHHHHHHHHHh
Confidence 3678899999999999999998653 4444554 34444332211 1111111 11112222222
Q ss_pred cCCccCccEEEEcCccCCHH---HHHHHHh-hcCcCEEEEecCCHHHHHHhhc
Q 023790 152 DGYYRGEIGFILDGLPRSRI---QAEILDQ-LAEIDLVVNFKCADNFIVTNRG 200 (277)
Q Consensus 152 ~~~~~~~~g~IldGfPrt~~---qae~l~~-~~~~d~vI~L~~~~e~l~~Rl~ 200 (277)
. +...++|....... |.-.+-. +...-.+++||-|...+-.|..
T Consensus 72 ~-----g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~ 119 (171)
T 4gp7_A 72 L-----GKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNK 119 (171)
T ss_dssp T-----TCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHH
T ss_pred C-----CCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHh
Confidence 2 34456665443322 2222222 2233358999999998888753
No 127
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.52 E-value=3.8e-05 Score=74.18 Aligned_cols=36 Identities=8% Similarity=0.032 Sum_probs=30.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCC-------CccchhH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV-------PRISMSS 111 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~-------~~Is~~d 111 (277)
+.++.|+|+|.+||||||+|+.|+++++. .+++.|+
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 46789999999999999999999999986 4566544
No 128
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.51 E-value=5.8e-05 Score=67.45 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=30.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCcc--chhHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI--SMSSIV 113 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~I--s~~dll 113 (277)
+.+..++|.||||+|||++|+.+|+.+|.+++ +.+++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~ 73 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELE 73 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhh
Confidence 45567888999999999999999999988765 444554
No 129
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.42 E-value=4.2e-05 Score=70.61 Aligned_cols=30 Identities=27% Similarity=0.340 Sum_probs=27.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCc
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPR 106 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~ 106 (277)
..+.|+|+|+|||||||+++.|++.+++.+
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 446799999999999999999999999887
No 130
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.41 E-value=5.9e-05 Score=63.66 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=29.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC-----CCccchhH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSS 111 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g-----~~~Is~~d 111 (277)
..+.+|.|+|++||||||+++.|+..+. ..+|+.++
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 5788999999999999999999999874 44555543
No 131
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.33 E-value=0.00019 Score=58.84 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=29.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh----C--CCccchhHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL----E--VPRISMSSIVR 114 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~----g--~~~Is~~dllr 114 (277)
.+..++|.||||+||||+++.++..+ | +.+++..+++.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~ 80 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF 80 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 46779999999999999999998876 4 34566655554
No 132
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.28 E-value=0.00017 Score=62.27 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=28.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
.+..++|.|+||+|||++|+.+++.++.+++.+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~ 70 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLAM 70 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 445589999999999999999999998876543
No 133
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.27 E-value=0.00016 Score=62.61 Aligned_cols=31 Identities=19% Similarity=0.338 Sum_probs=26.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
.-++|.|+||+||||+|+.++..++.+++.+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 3489999999999999999999998766544
No 134
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.00016 Score=68.52 Aligned_cols=33 Identities=12% Similarity=0.109 Sum_probs=28.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
.+.-|++.||||+|||.+|+.+|...|.+++.+
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 455699999999999999999999999877554
No 135
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.22 E-value=0.00017 Score=64.95 Aligned_cols=37 Identities=27% Similarity=0.248 Sum_probs=30.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC-------CCccchhHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSI 112 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g-------~~~Is~~dl 112 (277)
.++.+|.|+|++||||||+++.|+..++ +.+|++++.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 5778999999999999999999999876 455666643
No 136
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.00019 Score=67.99 Aligned_cols=33 Identities=15% Similarity=0.119 Sum_probs=28.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
.+.-|++.||||+|||++|+.+|..+|++++.+
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 345599999999999999999999999987554
No 137
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.0002 Score=67.74 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=28.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
+.-|++.||||+|||++|+.+|..+|++++.+
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 34599999999999999999999999887654
No 138
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.18 E-value=0.00015 Score=68.06 Aligned_cols=33 Identities=15% Similarity=0.080 Sum_probs=30.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhH
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~d 111 (277)
+.|+|.||+||||||++..|+++++..+|++|.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 578999999999999999999999988888765
No 139
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.00018 Score=67.48 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=28.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
+.-|++.||||+|||.+|+.+|...|.+++.+
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 34589999999999999999999999987654
No 140
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.17 E-value=0.00021 Score=62.61 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=28.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
.+..++|.|+||+|||++|+.+++.++.+++.+
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v 82 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNATFIRV 82 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 345599999999999999999999998876543
No 141
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.16 E-value=0.00022 Score=65.21 Aligned_cols=33 Identities=30% Similarity=0.414 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
.+..|+|.||||+|||++|+.|++.++.+++.+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~ 82 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMA 82 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEe
Confidence 445689999999999999999999999887654
No 142
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.15 E-value=0.0002 Score=63.94 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=30.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccc--hhHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS--MSSIVRQ 115 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is--~~dllr~ 115 (277)
.+..|+|.||||+|||++|+.+++.++.+++. ..+++..
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 44568999999999999999999999877654 4455543
No 143
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.15 E-value=0.00023 Score=62.90 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=27.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccc
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is 108 (277)
.+..++|.||||+||||+|+.+++.++.+++.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~ 84 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLN 84 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 35679999999999999999999999876544
No 144
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.15 E-value=0.00023 Score=64.80 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=30.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC-------CCccchhHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSI 112 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g-------~~~Is~~dl 112 (277)
.++.+|.|+|++||||||+++.|+..++ +..+++++.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 5778999999999999999999999875 344666653
No 145
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.14 E-value=0.00027 Score=61.78 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
.+..++|.|+||+|||++|+.+++..+.+++.+
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 456799999999999999999999999886544
No 146
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.13 E-value=0.00025 Score=62.80 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=24.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCccc
Q 023790 81 WAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (277)
Q Consensus 81 Ivi~G~pGSGKSTla~~La~~~g~~~Is 108 (277)
++|+|||||||||+++.|+..++...+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i~ 74 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFIS 74 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999999998765543
No 147
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.12 E-value=0.00021 Score=67.81 Aligned_cols=34 Identities=26% Similarity=0.288 Sum_probs=29.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~ 110 (277)
.+..|+++||||+||||+|+.||+.++.+++.++
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence 3456999999999999999999999999887664
No 148
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.07 E-value=0.0003 Score=58.33 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCC
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEV 104 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~ 104 (277)
+++.|+|++||||||+.+.|+..+++
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47899999999999999999998863
No 149
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=97.05 E-value=0.0054 Score=54.72 Aligned_cols=156 Identities=8% Similarity=-0.014 Sum_probs=84.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhHHHHHhcCCCChhHHHHHHHHhccccchHHHHHHHHHHHHHcCCc
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~dllr~~~~~~~~lg~~i~~~l~~G~~ip~~~~~~ll~~~l~~~~~ 155 (277)
..+++|+|.|..||||+++.++|.+.++=..+.+-. +. .|.. ++.....+-...... -
T Consensus 73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a-----~~--~Pt~--------------eE~~~~ylwR~~~~l-P 130 (289)
T 3rhf_A 73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTA-----FK--APTD--------------EEKSHDFLWRIEKQV-P 130 (289)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEE-----CC--SCCH--------------HHHTSCTTHHHHTTC-C
T ss_pred CCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEE-----CC--CCCh--------------hhhcCCHHHHHHHhC-C
Confidence 368999999999999999999999988543332200 00 0100 111111111111111 1
Q ss_pred cCccEEEEcCccCC-------------------HHHHHHHHhh----cCcCEEEEecCCHHHHHHhhcchH---------
Q 023790 156 RGEIGFILDGLPRS-------------------RIQAEILDQL----AEIDLVVNFKCADNFIVTNRGGSL--------- 203 (277)
Q Consensus 156 ~~~~g~IldGfPrt-------------------~~qae~l~~~----~~~d~vI~L~~~~e~l~~Rl~~~~--------- 203 (277)
..+.-.|+|+...+ ..+...|++. ...-+-+||+++.++-.+|+.++.
T Consensus 131 ~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP~k~WK~ 210 (289)
T 3rhf_A 131 AAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDPSKHWKY 210 (289)
T ss_dssp CTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCGGGGGGC
T ss_pred CCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCCcccccC
Confidence 23444556543221 1122333332 123456999999999999983321
Q ss_pred -------HHHHHHHHHhchhHHHHHHh-cCcEEEEeCCCCH---HHHHHHHHHHHHHcccc
Q 023790 204 -------KEKLEAYAELGKPLEDYYQK-QKKLLEFQVGSAP---LETWQGLLTALHLQHIN 253 (277)
Q Consensus 204 -------~~rl~~y~~~~~~l~~~y~~-~~~li~Ida~~s~---eev~~~I~~~L~~~~~~ 253 (277)
.++.+.|.+....+...-+. ...|.+|+++..- -.|.+.|++.|+..++.
T Consensus 211 s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~VV~addK~~arl~v~~~ll~~Le~~~~~ 271 (289)
T 3rhf_A 211 SRGDLAERAYWDDYMDAYSVAFEKTSTEIAPWHVVPANKKWYARIAVQQLLLDALGGLQLD 271 (289)
T ss_dssp CHHHHHHHTTHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 23345555554444332221 2359999976543 33777888888776543
No 150
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.04 E-value=0.00031 Score=61.92 Aligned_cols=32 Identities=28% Similarity=0.287 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccc
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is 108 (277)
.+..++|.|+||+|||++|+.+++.++.+++.
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~ 80 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIK 80 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 34568999999999999999999999876543
No 151
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.03 E-value=0.00028 Score=67.16 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
.+.-|++.||||+|||++|+.+|.+.+++++.+
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~v 274 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRV 274 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCCCeEEE
Confidence 445699999999999999999999999987554
No 152
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.03 E-value=0.00035 Score=62.93 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
.+..++|.||||+|||++|+.+++..+.+++.+
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v 82 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSV 82 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence 345699999999999999999999998876544
No 153
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.02 E-value=0.0003 Score=59.89 Aligned_cols=35 Identities=17% Similarity=-0.004 Sum_probs=30.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchhH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~d 111 (277)
..+..|+|+|++||||||+|..|+++.+ ..|+.|.
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 4678899999999999999999999877 7777653
No 154
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.00037 Score=65.78 Aligned_cols=33 Identities=12% Similarity=0.172 Sum_probs=28.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
.+.-|++.||||+|||.+|+.+|...+.+++.+
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence 345599999999999999999999999987654
No 155
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.99 E-value=0.00049 Score=61.61 Aligned_cols=38 Identities=13% Similarity=0.074 Sum_probs=30.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC-------CCcc-chhHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRI-SMSSIV 113 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g-------~~~I-s~~dll 113 (277)
.++.+|.|.|++||||||+++.|++.++ ...+ +.++.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 5788999999999999999999999875 3344 666654
No 156
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.97 E-value=0.00038 Score=63.92 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
.+..++|.|+||+|||++|+.|++.++.+++.+
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~ 103 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAIS 103 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 345699999999999999999999998776544
No 157
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.97 E-value=0.00056 Score=55.09 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.+..++|.|+||+|||++++.+++.+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999999986
No 158
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.95 E-value=0.00041 Score=58.20 Aligned_cols=26 Identities=15% Similarity=-0.006 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.+..++|+||+||||||+.+.|...+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45679999999999999999999865
No 159
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.94 E-value=0.00038 Score=61.63 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+..++|.|+||+|||++|+.+++.+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345679999999999999999999987
No 160
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.94 E-value=0.00024 Score=61.81 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=25.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 81 Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
++|.|+||+|||++|+.+++..+.+++.+
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~~~~~v 75 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHVPFFSM 75 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 88999999999999999999998776554
No 161
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.93 E-value=0.0004 Score=55.98 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.+..++|.|+||+|||++++.+++.+
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999999986
No 162
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.92 E-value=0.00049 Score=59.45 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=25.2
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 81 Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
++|+|+||+||||+++.++...+...+.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~ 80 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPFITA 80 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 99999999999999999999887655443
No 163
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.87 E-value=0.00063 Score=61.69 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=24.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCc
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPR 106 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~ 106 (277)
..++|.||||+||||+++.++..++..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 4589999999999999999999987653
No 164
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.87 E-value=0.00082 Score=55.82 Aligned_cols=36 Identities=17% Similarity=0.149 Sum_probs=27.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh---CCC--ccchhHHHH
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLL---EVP--RISMSSIVR 114 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~---g~~--~Is~~dllr 114 (277)
..++|.|+||+|||++++.+++.. +.. +++..+++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~ 95 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR 95 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH
Confidence 678999999999999999999876 333 355555543
No 165
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.85 E-value=0.00059 Score=61.67 Aligned_cols=31 Identities=13% Similarity=0.071 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh-CCCcc
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL-EVPRI 107 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~-g~~~I 107 (277)
.+.-|+|.||||+|||++|+.+++.+ +.+++
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~ 75 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFF 75 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcCCCcEE
Confidence 34568999999999999999999998 65543
No 166
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.83 E-value=0.00056 Score=62.67 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccc--hhHHH
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRIS--MSSIV 113 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is--~~dll 113 (277)
.-|+|.||||+|||++|+.+++.++.+++. ..+++
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 121 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHh
Confidence 458899999999999999999999887654 44444
No 167
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.82 E-value=0.00075 Score=56.80 Aligned_cols=27 Identities=4% Similarity=-0.086 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g 103 (277)
.+..++|.|+||+||||+++.+++.++
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 456799999999999999999998764
No 168
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.80 E-value=0.0007 Score=62.00 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=28.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
.+..|+|.|+||+|||++|+.+++.++.+++.+
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i 148 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSI 148 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEEEE
Confidence 456799999999999999999999998876543
No 169
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.76 E-value=0.00079 Score=60.51 Aligned_cols=32 Identities=19% Similarity=0.130 Sum_probs=27.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
...++|.|+||+|||++|+.+++.++.+++.+
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 34589999999999999999999998876554
No 170
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.74 E-value=0.00076 Score=63.84 Aligned_cols=32 Identities=28% Similarity=0.349 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhC--CCccch
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLE--VPRISM 109 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g--~~~Is~ 109 (277)
+..++|.||||+|||++|+.+|+.++ ++++.+
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~ 96 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCPM 96 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEE
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEE
Confidence 34589999999999999999999998 655443
No 171
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.73 E-value=0.00082 Score=59.03 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=25.2
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 81 Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
++|+|+|||||||+++.|+...+...+.+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~ 104 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFITA 104 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEEEe
Confidence 99999999999999999999887655443
No 172
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.73 E-value=0.00089 Score=53.11 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..|+|.|+||+|||++|+.+++..
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 348999999999999999999864
No 173
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.70 E-value=0.00087 Score=57.04 Aligned_cols=27 Identities=11% Similarity=0.019 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+..+.|+||+||||||+++.|+..+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 467789999999999999999999876
No 174
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.68 E-value=0.0013 Score=59.49 Aligned_cols=27 Identities=26% Similarity=0.176 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+.+|.|+|++||||||+++.|+..+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 578899999999999999999999865
No 175
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.68 E-value=0.0011 Score=55.66 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g 103 (277)
..+..+.|+||+||||||+++.|+..+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4678899999999999999999998763
No 176
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.66 E-value=0.0011 Score=56.72 Aligned_cols=28 Identities=18% Similarity=0.153 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g 103 (277)
..+..++|+||+||||||+.+.|+..+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4677899999999999999999998764
No 177
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.66 E-value=0.0011 Score=61.45 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=28.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccc
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is 108 (277)
..+..++|.|||||||||+++.|+..++..++.
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 366789999999999999999999988765544
No 178
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.64 E-value=0.0012 Score=63.29 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=26.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
-|+|.||||+|||++++.++...+.+++.+
T Consensus 51 gvLL~GppGtGKT~Laraia~~~~~~f~~i 80 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEANVPFFHI 80 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence 389999999999999999999999887554
No 179
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.63 E-value=0.0011 Score=61.29 Aligned_cols=33 Identities=12% Similarity=0.172 Sum_probs=28.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
.+..|+|.|+||+|||++|+.+++.++.+++.+
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 346799999999999999999999998876544
No 180
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.62 E-value=0.0013 Score=54.32 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
+++.+.|.|++||||||++..|+..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 56789999999999999999999865
No 181
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.61 E-value=0.0012 Score=53.03 Aligned_cols=26 Identities=15% Similarity=0.033 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.+..++|.|++|+||||+++.++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999999876
No 182
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=96.59 E-value=0.01 Score=53.17 Aligned_cols=156 Identities=8% Similarity=0.058 Sum_probs=77.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCC-CccchhHHHHHhcCCC----Ch-----hHHHHHHHHhccccchHH-----
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV-PRISMSSIVRQDLSPR----SS-----LHKQIANAVNRGEVVSED----- 140 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~-~~Is~~dllr~~~~~~----~~-----lg~~i~~~l~~G~~ip~~----- 140 (277)
.++..|+|+|| ||+|+.+.|.+.+.- ..+++...-|.. ..+ .. ..+.....+.+|+.+.-.
T Consensus 103 ~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~-R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~~~~~g~ 178 (295)
T 1kjw_A 103 HYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPK-REYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSH 178 (295)
T ss_dssp CSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCC-CTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTE
T ss_pred CCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCC-CCccccCceeEecCCHHHHHHHHHCCCcEEEEEEcCc
Confidence 34566888897 799999999986531 111110000110 011 00 123344444555543100
Q ss_pred ---HHHHHHHHHHHcCCccCccEEEEcCccCCHHHHHHHHhh-cCcCEEEEecCCHHHHHHhhc-----chHHHHHHHHH
Q 023790 141 ---IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQL-AEIDLVVNFKCADNFIVTNRG-----GSLKEKLEAYA 211 (277)
Q Consensus 141 ---~~~~ll~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~~-~~~d~vI~L~~~~e~l~~Rl~-----~~~~~rl~~y~ 211 (277)
+..+-|.+.+.+ +..+|+|.-+....+ +... ..| ++|++..|.-..++++. +.+++|++...
T Consensus 179 ~YGt~~~~V~~~~~~-----G~~vildid~~g~~~---l~~~~~~p-i~IfI~pps~~~L~~L~~R~t~~~i~~rl~~a~ 249 (295)
T 1kjw_A 179 LYGTSVQSVREVAEQ-----GKHCILDVSANAVRR---LQAAHLHP-IAIFIRPRSLENVLEINKRITEEQARKAFDRAT 249 (295)
T ss_dssp EEEEEHHHHHHHHHT-----TCEEEECCCTTHHHH---HHHTTCCC-EEEEECCSSHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred EeeeeHHHHHHHHhc-----CCeEEEEeCHHHHHH---HHhcccCC-eEEEEECCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 011223333343 567888865443322 3221 223 89999877443333352 33556665442
Q ss_pred HhchhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHHc
Q 023790 212 ELGKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHLQ 250 (277)
Q Consensus 212 ~~~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~~ 250 (277)
+. . ..+....+ .+ |. +.+.++.+++|.+++...
T Consensus 250 ~~--e-~~~~~~fd-~v-iv-Nd~le~a~~~l~~ii~~~ 282 (295)
T 1kjw_A 250 KL--E-QEFTECFS-AI-VE-GDSFEEIYHKVKRVIEDL 282 (295)
T ss_dssp HH--H-HHHGGGCS-EE-EC-CSSHHHHHHHHHHHHHHH
T ss_pred HH--H-HhccccCe-EE-EE-CcCHHHHHHHHHHHHHhc
Confidence 21 1 11112222 23 33 348999999999999765
No 183
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.58 E-value=0.0016 Score=52.83 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=24.3
Q ss_pred cCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 74 ~~~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+.+..+|+|+|++|+||||+...|...
T Consensus 3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 3 SHMKSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456789999999999999999999863
No 184
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.55 E-value=0.0015 Score=57.64 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..++|.|+||+|||++|+.+++.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 469999999999999999999986
No 185
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.54 E-value=0.0014 Score=58.67 Aligned_cols=37 Identities=11% Similarity=-0.122 Sum_probs=28.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh---CCC--ccchhHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL---EVP--RISMSSIV 113 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~---g~~--~Is~~dll 113 (277)
.+..++|.|+||+||||+++.+++.+ +.. +++..++.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~ 77 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA 77 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence 34558999999999999999999977 544 45655553
No 186
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.54 E-value=0.0018 Score=53.93 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCC
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEV 104 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~ 104 (277)
..++|.|+||+||||+++.+++.++.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 47899999999999999999998754
No 187
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.53 E-value=0.001 Score=67.56 Aligned_cols=37 Identities=14% Similarity=0.102 Sum_probs=30.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccch--hHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIV 113 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~--~dll 113 (277)
.+.-|++.||||+|||++|+.+|+.+|.+++.+ .+++
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhh
Confidence 456699999999999999999999999877554 4554
No 188
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.52 E-value=0.0013 Score=63.18 Aligned_cols=32 Identities=16% Similarity=0.102 Sum_probs=28.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
+..++|.||||+||||+|+.+++.+|+.++.+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 45799999999999999999999998876644
No 189
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.51 E-value=0.0015 Score=53.85 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++|.|+||+|||++++.+++.+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 39999999999999999999875
No 190
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.49 E-value=0.002 Score=57.76 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=21.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHhC
Q 023790 81 WAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 81 Ivi~G~pGSGKSTla~~La~~~g 103 (277)
++|.|+||+||||+++.+++.++
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999864
No 191
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.47 E-value=0.0012 Score=55.09 Aligned_cols=24 Identities=25% Similarity=0.109 Sum_probs=21.7
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCC
Q 023790 81 WAFIGSPRAKKHVYAEMLSKLLEVP 105 (277)
Q Consensus 81 Ivi~G~pGSGKSTla~~La~~~g~~ 105 (277)
++|+|++||||||+|+.|++. |.+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~ 25 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQ 25 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSS
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCC
Confidence 789999999999999999987 654
No 192
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.46 E-value=0.0014 Score=55.95 Aligned_cols=29 Identities=10% Similarity=0.165 Sum_probs=24.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCc
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPR 106 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~ 106 (277)
...++|.||||+||||+|..|++.++-..
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i 86 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAV 86 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 34599999999999999999999875433
No 193
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.44 E-value=0.0017 Score=58.80 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=24.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~ 104 (277)
+..++|.||||+|||++|+.+++.++.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 457999999999999999999999874
No 194
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.41 E-value=0.0021 Score=53.60 Aligned_cols=25 Identities=24% Similarity=0.118 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
++..++|.|+|||||||++..++..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~~ 43 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGLL 43 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 6778999999999999999999873
No 195
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.41 E-value=0.0018 Score=55.08 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLS 99 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La 99 (277)
.++-.+.|+||+||||||+++.|+
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 378889999999999999999988
No 196
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.41 E-value=0.0016 Score=57.87 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=25.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCcc
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~I 107 (277)
..++|.|+||+|||++|+.+++.++.+++
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 45899999999999999999999887654
No 197
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.40 E-value=0.0017 Score=61.40 Aligned_cols=37 Identities=22% Similarity=0.174 Sum_probs=27.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh-CCCc--cchhHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL-EVPR--ISMSSIV 113 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~-g~~~--Is~~dll 113 (277)
.+.-|+|.||||+|||++|+.+++.+ +.++ ++..+++
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 34568999999999999999999998 6554 3444544
No 198
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.39 E-value=0.002 Score=54.12 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++-.+.|+|++||||||+++.|+..+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 377889999999999999999998743
No 199
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.36 E-value=0.0018 Score=62.75 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=27.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCcc
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~I 107 (277)
++..++|+||||+||||+++.|+..++.+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~ 137 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFV 137 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 4668999999999999999999999876543
No 200
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.36 E-value=0.00074 Score=61.33 Aligned_cols=27 Identities=7% Similarity=0.043 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++..++|.||||+|||++++.+++.+
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 467789999999999999999999987
No 201
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.35 E-value=0.00062 Score=53.94 Aligned_cols=25 Identities=12% Similarity=-0.036 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhC
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g 103 (277)
..|+|.|+||+|||++|+.+++..+
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CcEEEECCCCccHHHHHHHHHHhCC
Confidence 3489999999999999999988766
No 202
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.35 E-value=0.0013 Score=59.09 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCcc
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~I 107 (277)
..++|.|+||+|||++++.+++.++.+++
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~~~ 75 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLDFH 75 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 35999999999999999999999887643
No 203
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.34 E-value=0.0021 Score=60.95 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
..++|.|+||+||||+|+.|++.++..++.+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 4699999999999999999999998776544
No 204
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.34 E-value=0.0042 Score=55.98 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++.+|.|+|++||||||++..||..+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 467889999999999999999999876
No 205
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.32 E-value=0.0027 Score=52.47 Aligned_cols=26 Identities=19% Similarity=0.002 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
+...++|.|++||||||+++.|...+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 45678999999999999999998764
No 206
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.31 E-value=0.0026 Score=53.25 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
++-.++|.|++||||||++..++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 6678999999999999999999854
No 207
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.31 E-value=0.0044 Score=55.68 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+.++.|+|+.||||||+++.|+..+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 577899999999999999999999875
No 208
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.30 E-value=0.0028 Score=51.80 Aligned_cols=27 Identities=7% Similarity=0.048 Sum_probs=23.1
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 75 ~~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
+.+..+|+|+|.+|+||||+..++...
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999999887653
No 209
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.29 E-value=0.0026 Score=60.44 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
....++|+|+||+|||++++.|++.+
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 44568999999999999999999986
No 210
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.24 E-value=0.0036 Score=50.82 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 467789999999999999999999876
No 211
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.22 E-value=0.0026 Score=53.16 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++.|+|++||||||+.+.|+..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 468999999999999999999877
No 212
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.21 E-value=0.0024 Score=61.40 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=25.7
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 81 Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
++|+||||+||||+++.++...+.+++.+
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~~~~i~i 95 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEARVPFITA 95 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999987766543
No 213
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.21 E-value=0.0031 Score=52.36 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
++..+++.|+|||||||++-.++.++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 35688999999999999997777654
No 214
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.20 E-value=0.002 Score=58.26 Aligned_cols=26 Identities=15% Similarity=0.163 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.+..++|.|+||+||||+++.+++.+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45579999999999999999999877
No 215
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.20 E-value=0.0032 Score=51.35 Aligned_cols=27 Identities=11% Similarity=0.035 Sum_probs=23.9
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 75 ~~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
+.+..+|+|+|.+|+||||+..+|...
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcC
Confidence 456789999999999999999999864
No 216
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.20 E-value=0.0027 Score=53.81 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
++..+.|+|+|||||||++..++..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 7788999999999999999999974
No 217
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.20 E-value=0.004 Score=49.27 Aligned_cols=26 Identities=19% Similarity=0.073 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+..+|...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999999653
No 218
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.20 E-value=0.0029 Score=57.37 Aligned_cols=26 Identities=12% Similarity=0.126 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.+..++|.|+||+||||+++.+++.+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999999976
No 219
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.18 E-value=0.0026 Score=57.34 Aligned_cols=26 Identities=12% Similarity=0.078 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.+..++|.|+||+||||+++.+++.+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45579999999999999999999977
No 220
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.18 E-value=0.0031 Score=51.35 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=22.5
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 75 ~~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
+.+..+|+|+|.+|+||||+..+|...
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcC
Confidence 356789999999999999999999753
No 221
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.17 E-value=0.0026 Score=60.94 Aligned_cols=37 Identities=14% Similarity=0.075 Sum_probs=29.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCcc--chhHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI--SMSSIV 113 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~I--s~~dll 113 (277)
.+.-++|.|+||+|||++|+.+++..+.+++ +..++.
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~ 275 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhh
Confidence 3455999999999999999999999987665 444554
No 222
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.17 E-value=0.0033 Score=53.13 Aligned_cols=25 Identities=12% Similarity=0.090 Sum_probs=21.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
..+|+++|+|+||||||+.|..+..
T Consensus 3 ~~~mi~l~tG~pGsGKT~~a~~~~~ 27 (199)
T 2r2a_A 3 AMAEICLITGTPGSGKTLKMVSMMA 27 (199)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred cceeEEEEEeCCCCCHHHHHHHHHH
Confidence 4678999999999999999988643
No 223
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.16 E-value=0.0033 Score=49.50 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+...|...
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcC
Confidence 46688999999999999999999864
No 224
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.16 E-value=0.0038 Score=56.83 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++.+|.|+|++||||||+++.|+..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999999999865
No 225
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.16 E-value=0.0044 Score=50.54 Aligned_cols=27 Identities=11% Similarity=0.085 Sum_probs=23.6
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 75 ~~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
+....+|+|+|.+|+||||+..+|...
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcC
Confidence 356788999999999999999999764
No 226
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.15 E-value=0.0034 Score=56.63 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+||+||||||+++.|+..+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 467789999999999999999999876
No 227
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.13 E-value=0.0033 Score=56.44 Aligned_cols=38 Identities=13% Similarity=0.090 Sum_probs=28.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhC----CC--ccchhHHHHH
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLE----VP--RISMSSIVRQ 115 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g----~~--~Is~~dllr~ 115 (277)
+..++|.|+||+|||+++..++..+. .. +++..+++.+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~ 195 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID 195 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHH
Confidence 46799999999999999999998543 33 3566665543
No 228
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.12 E-value=0.0041 Score=54.62 Aligned_cols=27 Identities=11% Similarity=0.058 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+||.||||||+.+.|+..+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 467789999999999999999998865
No 229
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.12 E-value=0.0027 Score=51.43 Aligned_cols=28 Identities=14% Similarity=0.023 Sum_probs=22.1
Q ss_pred cCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 74 ~~~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+.+..+|+|+|.+|+||||+..+|...
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcC
Confidence 3457789999999999999999999853
No 230
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.10 E-value=0.005 Score=54.18 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++|.|+||+|||++++.+++.+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 38999999999999999999986
No 231
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.10 E-value=0.0042 Score=55.88 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=20.8
Q ss_pred EEEEcCCCCChHHHHHHHHHHh
Q 023790 81 WAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 81 Ivi~G~pGSGKSTla~~La~~~ 102 (277)
++|.||+|+||||+++.|++.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999965
No 232
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.09 E-value=0.0035 Score=50.89 Aligned_cols=27 Identities=11% Similarity=0.191 Sum_probs=22.9
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 75 ~~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
+.+..+|+|+|.+|+||||+..+|...
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 356788999999999999999999864
No 233
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.08 E-value=0.0044 Score=49.48 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+..+|...
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhC
Confidence 46788999999999999999999753
No 234
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.04 E-value=0.0042 Score=55.87 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
++.+|.|+|+.||||||+++.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 56789999999999999999999875
No 235
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.03 E-value=0.0044 Score=48.54 Aligned_cols=25 Identities=16% Similarity=0.089 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
+..+|+|+|.+|+||||+...|...
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcC
Confidence 4578999999999999999998764
No 236
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.00 E-value=0.0027 Score=64.53 Aligned_cols=34 Identities=12% Similarity=0.077 Sum_probs=28.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
..+..|+|+|+|||||||+|+.|+..++..++.+
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v 269 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEE
Confidence 3556799999999999999999999988766544
No 237
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.00 E-value=0.0024 Score=57.23 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=21.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHhC
Q 023790 81 WAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 81 Ivi~G~pGSGKSTla~~La~~~g 103 (277)
++|.|+||+|||++|+.+++.++
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 99999999999999999999876
No 238
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.99 E-value=0.002 Score=53.15 Aligned_cols=25 Identities=12% Similarity=0.276 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
+..+.|+|++||||||+++.|...+
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999875
No 239
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.99 E-value=0.0044 Score=48.37 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
..+|+++|.+|+||||+...|...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Confidence 467999999999999999999764
No 240
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.99 E-value=0.0042 Score=56.24 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..++|.|+||+||||+++.+++.+
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999987
No 241
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.97 E-value=0.0044 Score=62.23 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
++..++|.|+||+|||++|+.|++.+
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45569999999999999999999997
No 242
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.97 E-value=0.0042 Score=50.38 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+...|...
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcC
Confidence 45678999999999999999999864
No 243
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.96 E-value=0.0031 Score=56.28 Aligned_cols=31 Identities=16% Similarity=0.053 Sum_probs=25.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
..+++.|+||+|||++++.+++.++..++.+
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l~~~~~~i 79 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDVNADMMFV 79 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 4567777799999999999999998766544
No 244
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.96 E-value=0.005 Score=48.17 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
++|+|+|.+|+||||+..+|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999865
No 245
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.95 E-value=0.0077 Score=55.47 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++.+|.|+|+.||||||+++.|+..+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 578899999999999999999999875
No 246
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.93 E-value=0.0043 Score=49.38 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=22.5
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHH
Q 023790 75 RRRGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 75 ~~~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
|.+..+|+|+|.+|+||||+...|..
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHc
Confidence 35668899999999999999999975
No 247
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.92 E-value=0.0043 Score=50.56 Aligned_cols=27 Identities=7% Similarity=0.133 Sum_probs=22.1
Q ss_pred cCCCCeEEEEEcCCCCChHHHHHHHHH
Q 023790 74 ERRRGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 74 ~~~~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
.+....+|+|+|.+|+||||+..+|..
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 346778999999999999999999865
No 248
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.92 E-value=0.0055 Score=48.83 Aligned_cols=26 Identities=8% Similarity=0.045 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+..+|...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 46688999999999999999999875
No 249
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.92 E-value=0.0029 Score=64.24 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=31.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccch--hHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQ 115 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~--~dllr~ 115 (277)
.+.-|++.||||+|||.+|+.+|...+.+++++ .+++..
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~ 550 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT
T ss_pred CCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcc
Confidence 344589999999999999999999999987654 466644
No 250
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.91 E-value=0.0056 Score=47.96 Aligned_cols=25 Identities=12% Similarity=-0.071 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
+..+|+|+|.+|+||||+...|...
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4578999999999999999999864
No 251
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.90 E-value=0.004 Score=53.74 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+||.||||||+.+.|+--+
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 477789999999999999999998543
No 252
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.90 E-value=0.0042 Score=56.03 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=21.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHhC
Q 023790 81 WAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 81 Ivi~G~pGSGKSTla~~La~~~g 103 (277)
++|.||||+||||+++.+++.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999999999864
No 253
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.90 E-value=0.0043 Score=48.87 Aligned_cols=26 Identities=12% Similarity=0.032 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+..+|...
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcC
Confidence 46688999999999999999999763
No 254
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.90 E-value=0.0044 Score=53.72 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhC
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g 103 (277)
..|+|.|+||+|||++|+.+++..+
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4589999999999999999998764
No 255
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.90 E-value=0.006 Score=54.55 Aligned_cols=27 Identities=19% Similarity=0.113 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++.+|.|+|++|+||||++..|+..+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 357789999999999999999998765
No 256
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.90 E-value=0.0035 Score=51.60 Aligned_cols=28 Identities=11% Similarity=0.065 Sum_probs=21.8
Q ss_pred cCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 74 ~~~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+.+..+|+|+|.+|+||||+.+.+...
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhc
Confidence 4467789999999999999999988764
No 257
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.89 E-value=0.0051 Score=54.32 Aligned_cols=27 Identities=11% Similarity=0.058 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++-.++|+|+|||||||++..++...
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 477889999999999999999998754
No 258
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.88 E-value=0.0051 Score=50.58 Aligned_cols=26 Identities=12% Similarity=0.060 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
....+|+|+|++||||||+.+.|+..
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 34578999999999999999999874
No 259
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.88 E-value=0.0048 Score=54.39 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=21.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHhC
Q 023790 81 WAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 81 Ivi~G~pGSGKSTla~~La~~~g 103 (277)
++|.|+||+||||+++.+++.+.
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999863
No 260
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.87 E-value=0.0053 Score=48.99 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
..+|+|+|++|+||||+..+|..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 46799999999999999999975
No 261
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.86 E-value=0.0057 Score=50.09 Aligned_cols=27 Identities=11% Similarity=-0.095 Sum_probs=23.4
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 75 ~~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
+.+..+|+|+|.+|+||||+...|...
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhC
Confidence 356688999999999999999999754
No 262
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.86 E-value=0.0053 Score=51.99 Aligned_cols=25 Identities=12% Similarity=0.149 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
++-.++|.|+|||||||+|..++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 6778999999999999999888754
No 263
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.85 E-value=0.0053 Score=48.47 Aligned_cols=26 Identities=8% Similarity=-0.013 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+...|...
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 45688999999999999999999864
No 264
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.84 E-value=0.0056 Score=54.04 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~g 103 (277)
.++|.|+||+||||+++.+++.++
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 499999999999999999999864
No 265
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.84 E-value=0.0067 Score=49.27 Aligned_cols=26 Identities=12% Similarity=0.050 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
....+|+|+|.+|+||||+..+|...
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcC
Confidence 46688999999999999999999764
No 266
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.84 E-value=0.0077 Score=48.71 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
....+|+|+|.+|+||||+..+|...
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 46788999999999999999999875
No 267
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.84 E-value=0.0056 Score=48.83 Aligned_cols=26 Identities=8% Similarity=0.035 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+..+|...
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 46688999999999999999998764
No 268
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.84 E-value=0.0055 Score=57.77 Aligned_cols=35 Identities=9% Similarity=0.049 Sum_probs=27.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh-----CCC--ccchhHH
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLL-----EVP--RISMSSI 112 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~-----g~~--~Is~~dl 112 (277)
+..++|.|+||+||||+++.+++.+ +.. +++..++
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~ 171 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 4569999999999999999999876 443 4555554
No 269
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.83 E-value=0.0041 Score=50.00 Aligned_cols=25 Identities=16% Similarity=0.111 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
++..+|+|+|.+|+||||+..++..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 5778999999999999999998863
No 270
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.82 E-value=0.0046 Score=56.60 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCC
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~ 105 (277)
+.++.|+|++||||||+++.|+..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 7789999999999999999999987653
No 271
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.81 E-value=0.0066 Score=50.71 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.+..+|+|+|.+|+||||++..|+..+
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999999875
No 272
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.81 E-value=0.0052 Score=49.00 Aligned_cols=25 Identities=12% Similarity=0.070 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
....+|+|+|.+|+||||+...|..
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc
Confidence 4668899999999999999999864
No 273
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.80 E-value=0.0063 Score=47.79 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
+..+|+|+|.+|+||||+..+|...
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 4578999999999999999999763
No 274
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.80 E-value=0.0056 Score=49.41 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+.+|+|+|.||+||||+..+|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999864
No 275
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.79 E-value=0.0071 Score=48.20 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
.+..+|+|+|.+|+||||+..+|..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678899999999999999999975
No 276
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.79 E-value=0.0061 Score=49.47 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=23.7
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 75 ~~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
|....+|+|+|.+|+||||+..+|...
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcC
Confidence 357789999999999999999999754
No 277
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.78 E-value=0.0057 Score=48.22 Aligned_cols=26 Identities=12% Similarity=0.064 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+...|...
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 35688999999999999999999764
No 278
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.78 E-value=0.01 Score=56.17 Aligned_cols=26 Identities=12% Similarity=0.192 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
++.+|+|.|++|+||||++..||..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999765
No 279
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.78 E-value=0.006 Score=48.39 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
...+|+|+|.+|+||||+..+|...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEEEECCCCccHHHHHHHHhcC
Confidence 5678999999999999999999753
No 280
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.0066 Score=49.35 Aligned_cols=26 Identities=12% Similarity=0.063 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|++|+||||+...|...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46688999999999999999999864
No 281
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.77 E-value=0.0062 Score=50.14 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
...+|+|+|++|+||||+.+.|+..
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcC
Confidence 3468999999999999999999864
No 282
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.76 E-value=0.005 Score=53.22 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 477889999999999999999998643
No 283
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.76 E-value=0.0046 Score=52.96 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
..+-++.|+|+.||||||+.+.|+--
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46778999999999999999999854
No 284
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.75 E-value=0.0074 Score=51.92 Aligned_cols=27 Identities=19% Similarity=-0.103 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++..+++.|+||+||||.+-.++.++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 467899999999999999999988876
No 285
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.74 E-value=0.0073 Score=54.46 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCC
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEV 104 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~ 104 (277)
..++|.|+||+||||+++.+++.++.
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46899999999999999999998865
No 286
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.73 E-value=0.0075 Score=48.49 Aligned_cols=26 Identities=8% Similarity=0.003 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+..+|...
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 46688999999999999999999864
No 287
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.72 E-value=0.0065 Score=48.92 Aligned_cols=26 Identities=8% Similarity=-0.009 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+..+|...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcC
Confidence 46788999999999999999999863
No 288
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.71 E-value=0.006 Score=49.95 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
....+|+|+|.+|+||||+..+|..
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999999864
No 289
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.70 E-value=0.0055 Score=61.44 Aligned_cols=33 Identities=27% Similarity=0.308 Sum_probs=27.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhCCCc--cchhHH
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLLEVPR--ISMSSI 112 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~g~~~--Is~~dl 112 (277)
.++|.|+||+|||++|+.|++.++.++ +++.++
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~ 524 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEY 524 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGC
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhh
Confidence 699999999999999999999998654 444443
No 290
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.70 E-value=0.0069 Score=48.52 Aligned_cols=26 Identities=12% Similarity=-0.096 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+...|...
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhC
Confidence 45688999999999999999999864
No 291
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.69 E-value=0.0066 Score=48.53 Aligned_cols=26 Identities=15% Similarity=0.081 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+...|...
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 46688999999999999999999753
No 292
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.66 E-value=0.0033 Score=63.88 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=27.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccch
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~ 109 (277)
.+..++|.||||+||||+|+.|+..++..++.+
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v 542 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISI 542 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCC
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 455689999999999999999999987766544
No 293
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.66 E-value=0.008 Score=54.70 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++.++.|+|+|||||||+.+.|+..+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 467889999999999999999998653
No 294
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.65 E-value=0.0057 Score=53.70 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+.-+
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 477789999999999999999998643
No 295
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.65 E-value=0.0052 Score=50.00 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.+..+|+|+|.+|+||||+..+|....
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC
Confidence 567899999999999999999987653
No 296
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.65 E-value=0.0061 Score=52.78 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 477889999999999999999998654
No 297
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.65 E-value=0.0068 Score=48.72 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
+..+|+|+|.+|+||||+...|...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 5678999999999999999999864
No 298
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.65 E-value=0.0063 Score=48.49 Aligned_cols=26 Identities=8% Similarity=-0.031 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+...|...
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcC
Confidence 35678999999999999999999753
No 299
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.63 E-value=0.0068 Score=47.77 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
+..+|+|+|.+|+||||+...|..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 357899999999999999999975
No 300
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.63 E-value=0.0073 Score=49.17 Aligned_cols=26 Identities=8% Similarity=0.284 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
++..+|+|+|.+|+||||+..+|...
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcC
Confidence 56789999999999999999999753
No 301
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.62 E-value=0.0085 Score=50.20 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
+..+|+|+|.+|+||||+...|+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999999874
No 302
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.62 E-value=0.0075 Score=49.21 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+..++...
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhC
Confidence 46688999999999999999998764
No 303
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.62 E-value=0.008 Score=47.77 Aligned_cols=26 Identities=12% Similarity=0.117 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+..+|...
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 46688999999999999999999864
No 304
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.61 E-value=0.0082 Score=49.92 Aligned_cols=27 Identities=11% Similarity=0.035 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.+..+|+|+|++|+||||+..+|....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 466789999999999999999998753
No 305
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.60 E-value=0.0092 Score=52.77 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhC
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g 103 (277)
..|+|.||||+|||.+|..|+..++
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhc
Confidence 4599999999999999999998653
No 306
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.60 E-value=0.0084 Score=47.86 Aligned_cols=26 Identities=8% Similarity=0.035 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+...|...
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 56788999999999999999999764
No 307
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.60 E-value=0.0072 Score=47.51 Aligned_cols=24 Identities=8% Similarity=0.124 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
..+|+|+|.+|+||||+..+|...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 467999999999999999998754
No 308
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.58 E-value=0.0063 Score=51.60 Aligned_cols=25 Identities=12% Similarity=-0.074 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+-++.|+|+.||||||+.+.|+-.
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5667899999999999999999864
No 309
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.57 E-value=0.0059 Score=54.12 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+||.||||||+.+.|+--+
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 477889999999999999999998644
No 310
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.57 E-value=0.01 Score=47.89 Aligned_cols=26 Identities=19% Similarity=0.127 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
...++|+|+|.+|+||||+..+|...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence 45678999999999999999999765
No 311
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.57 E-value=0.0083 Score=48.06 Aligned_cols=26 Identities=8% Similarity=0.094 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+..+|...
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcC
Confidence 35688999999999999999999753
No 312
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.57 E-value=0.0079 Score=47.38 Aligned_cols=25 Identities=12% Similarity=0.034 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
...+|+|+|.+|+||||+...|...
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred CceEEEEECcCCCCHHHHHHHHHhC
Confidence 3478999999999999999999753
No 313
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.56 E-value=0.0064 Score=53.51 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 477889999999999999999998654
No 314
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.56 E-value=0.0085 Score=57.56 Aligned_cols=27 Identities=11% Similarity=0.116 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++.+|.|+|+.||||||+++.|+..+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 578899999999999999999999865
No 315
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.55 E-value=0.009 Score=55.13 Aligned_cols=27 Identities=11% Similarity=0.058 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+..++|+|++||||||+.+.|+..+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456789999999999999999998865
No 316
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.55 E-value=0.0063 Score=53.57 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 467789999999999999999998643
No 317
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.55 E-value=0.0088 Score=48.51 Aligned_cols=26 Identities=12% Similarity=0.012 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
....+|+|+|.+|+||||+..+|...
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 45688999999999999999999864
No 318
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.55 E-value=0.0077 Score=52.40 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
..+-++.|+|+.||||||+.+.|+..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46778999999999999999999974
No 319
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.55 E-value=0.0082 Score=56.69 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
++.+|+|.|++||||||++..|+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999765
No 320
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.55 E-value=0.0077 Score=49.58 Aligned_cols=26 Identities=15% Similarity=0.011 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+..+|...
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 56788999999999999999999864
No 321
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.54 E-value=0.0064 Score=52.88 Aligned_cols=27 Identities=11% Similarity=0.381 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+.-+
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 477789999999999999999998654
No 322
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.54 E-value=0.0066 Score=53.56 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 477789999999999999999998654
No 323
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.54 E-value=0.008 Score=55.31 Aligned_cols=30 Identities=20% Similarity=0.096 Sum_probs=25.3
Q ss_pred CccCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 72 ~~~~~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
++.| ++..+.|.|+|||||||+|..++...
T Consensus 56 GGi~-~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 56 GGYP-RGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp SSEE-TTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcc-CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444 77889999999999999999998763
No 324
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.54 E-value=0.0071 Score=53.02 Aligned_cols=25 Identities=24% Similarity=0.179 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
++-.+.|.|++||||||++..++..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 7788999999999999999999864
No 325
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.53 E-value=0.008 Score=52.86 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
..+-++.|+|+.||||||+.+.|+--
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 47778999999999999999999874
No 326
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.52 E-value=0.0069 Score=53.10 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 477889999999999999999998654
No 327
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.51 E-value=0.0074 Score=52.31 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
-++.|+|+.||||||+.+.|+--+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 678999999999999999998653
No 328
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.51 E-value=0.0065 Score=49.37 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHH
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~ 100 (277)
.+|+|+|++|+||||+..+++.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999976
No 329
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.51 E-value=0.0067 Score=53.01 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+.-+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 477789999999999999999998643
No 330
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.49 E-value=0.0069 Score=52.39 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999998653
No 331
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.49 E-value=0.0069 Score=52.00 Aligned_cols=27 Identities=33% Similarity=0.286 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 477889999999999999999998654
No 332
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.49 E-value=0.0098 Score=54.31 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.+.+|.|+|+|||||||+...|...+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 47889999999999999999998753
No 333
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.47 E-value=0.0093 Score=50.49 Aligned_cols=28 Identities=18% Similarity=0.218 Sum_probs=23.2
Q ss_pred CccCCCCeEEEEEcCCCCChHHHHHHHHH
Q 023790 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 72 ~~~~~~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
|+.| ++-.++|.|+||+|||++|..++.
T Consensus 25 GGl~-~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 25 GGFP-EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TSEE-TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCC-CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3444 778899999999999999988754
No 334
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.47 E-value=0.0097 Score=48.87 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+..+|...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 56789999999999999999999754
No 335
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.47 E-value=0.008 Score=49.11 Aligned_cols=26 Identities=12% Similarity=0.092 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+..+|...
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcC
Confidence 46688999999999999999999764
No 336
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.47 E-value=0.0082 Score=47.24 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
..+|+|+|.+|+||||+..+|..
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCC
T ss_pred eEEEEEECCCCCCHHHHHHHHcC
Confidence 36799999999999999998853
No 337
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.46 E-value=0.01 Score=48.55 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+..+|...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 46788999999999999999999864
No 338
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.46 E-value=0.0098 Score=49.01 Aligned_cols=26 Identities=12% Similarity=0.029 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
....+|+|+|.+|+||||+...|...
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 56789999999999999999999853
No 339
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.46 E-value=0.0081 Score=53.35 Aligned_cols=33 Identities=12% Similarity=-0.046 Sum_probs=28.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCccchhH
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~d 111 (277)
..++|.|++|+||||+++.+++..++.+++..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~ 64 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRE 64 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeec
Confidence 479999999999999999999988766666543
No 340
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.46 E-value=0.011 Score=50.64 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
++...+++.|.+|+||||++..|+..+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 577889999999999999999999665
No 341
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.45 E-value=0.0074 Score=52.84 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+--+
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 477789999999999999999998643
No 342
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.45 E-value=0.0077 Score=48.71 Aligned_cols=28 Identities=7% Similarity=0.070 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g 103 (277)
.+..+|+|+|.+|+||||+.+.|...+.
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4568899999999999999998877553
No 343
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.44 E-value=0.0095 Score=47.00 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHH
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~ 100 (277)
.+|+|+|.+|+||||+..+|..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999964
No 344
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.44 E-value=0.0051 Score=50.79 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
..+.+|+|+|++||||||+.+.|+..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46788999999999999999988643
No 345
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.44 E-value=0.0092 Score=48.46 Aligned_cols=26 Identities=15% Similarity=0.088 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+...|...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46688999999999999999999754
No 346
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.43 E-value=0.0064 Score=51.87 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 466779999999999999999998643
No 347
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.42 E-value=0.011 Score=54.06 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.+..+|+|+|.||+||||++..|+..+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 366789999999999999999998775
No 348
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.41 E-value=0.012 Score=49.25 Aligned_cols=27 Identities=11% Similarity=-0.082 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++..+++.|++||||||.+-.++.++
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 457889999999999999999999887
No 349
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.40 E-value=0.0088 Score=49.72 Aligned_cols=34 Identities=9% Similarity=-0.064 Sum_probs=27.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCCCccchh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~ 110 (277)
..+.-|+|.|++|+||||+|..|.++ |...++-|
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~r-G~~lvaDD 47 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALIDR-GHQLVCDD 47 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHHT-TCEEEESS
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc-CCeEecCC
Confidence 35667999999999999999999985 77666553
No 350
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.38 E-value=0.0098 Score=54.13 Aligned_cols=37 Identities=14% Similarity=0.074 Sum_probs=27.9
Q ss_pred CccCCCCeEEEEEcCCCCChHHHHHHHHHHhC--CCccch
Q 023790 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLLE--VPRISM 109 (277)
Q Consensus 72 ~~~~~~~~~Ivi~G~pGSGKSTla~~La~~~g--~~~Is~ 109 (277)
++.| ++..++|.|+||+|||++|..++...| +.++++
T Consensus 118 GGi~-~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 118 GHRY-ASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp TEEE-ESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCCC-CCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 3444 455679999999999999999997643 446665
No 351
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.38 E-value=0.0097 Score=49.50 Aligned_cols=26 Identities=12% Similarity=0.069 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+..+|...
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhC
Confidence 46688999999999999999998764
No 352
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.36 E-value=0.0095 Score=47.91 Aligned_cols=26 Identities=12% Similarity=0.080 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+...|...
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 45688999999999999999999754
No 353
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.35 E-value=0.0066 Score=58.37 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhC
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g 103 (277)
+..++|.|+||+|||++|+.|++..+
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CCeeEeecCchHHHHHHHHHHHHHHh
Confidence 34699999999999999999999774
No 354
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.35 E-value=0.011 Score=47.16 Aligned_cols=26 Identities=12% Similarity=0.042 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+..++...
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 46688999999999999999999764
No 355
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.35 E-value=0.0084 Score=52.68 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+--+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 477789999999999999999998643
No 356
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.35 E-value=0.0069 Score=49.39 Aligned_cols=26 Identities=12% Similarity=0.037 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
....+|+|+|.+|+||||+..+|...
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcC
Confidence 46788999999999999999999865
No 357
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.34 E-value=0.0091 Score=47.88 Aligned_cols=26 Identities=12% Similarity=0.069 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+..+|...
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcC
Confidence 35678999999999999999999843
No 358
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.33 E-value=0.0094 Score=48.21 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+..+|...
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcC
Confidence 45688999999999999999999764
No 359
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.33 E-value=0.0083 Score=52.32 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 467789999999999999999998654
No 360
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.32 E-value=0.011 Score=48.38 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=21.5
Q ss_pred cCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 74 ~~~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+.+..+|+|+|.+|+||||+...|...
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhC
Confidence 3467789999999999999999998753
No 361
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.32 E-value=0.0083 Score=53.23 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 477789999999999999999998654
No 362
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.31 E-value=0.0096 Score=49.10 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
.+..+|+|+|.+|+||||+..+|..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh
Confidence 4668899999999999999999864
No 363
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.30 E-value=0.011 Score=47.61 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+..++...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 46788999999999999999999754
No 364
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.29 E-value=0.011 Score=48.39 Aligned_cols=26 Identities=8% Similarity=0.046 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
....+|+|+|.+|+||||+..+|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 46688999999999999999999764
No 365
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.27 E-value=0.013 Score=53.80 Aligned_cols=26 Identities=12% Similarity=-0.009 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.+-.++|+||+||||||+.+.|+..+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 44589999999999999999998764
No 366
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.26 E-value=0.012 Score=48.28 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
++..+|+|+|.+|+||||+..+|..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 5678899999999999999999864
No 367
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.26 E-value=0.01 Score=54.18 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++..+.|+|+|||||||++..++...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 378899999999999999999999875
No 368
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.25 E-value=0.011 Score=59.43 Aligned_cols=38 Identities=29% Similarity=0.491 Sum_probs=28.6
Q ss_pred CCCe-EEEEEcCCCCChHHHHHHHHHHh---C--CCccchhHHH
Q 023790 76 RRGV-HWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIV 113 (277)
Q Consensus 76 ~~~~-~Ivi~G~pGSGKSTla~~La~~~---g--~~~Is~~dll 113 (277)
.++. .++|.||||+|||++|+.|++.+ + +..+++.++.
T Consensus 518 ~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~ 561 (758)
T 3pxi_A 518 KRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYM 561 (758)
T ss_dssp TSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcc
Confidence 3444 69999999999999999999986 3 3445554443
No 369
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.25 E-value=0.013 Score=52.90 Aligned_cols=27 Identities=11% Similarity=0.132 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+.+|.|+|++|+||||++..||..+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467889999999999999999999865
No 370
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.24 E-value=0.013 Score=47.52 Aligned_cols=25 Identities=16% Similarity=0.084 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
++..+|+|+|.+|+||||+..+|..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999999984
No 371
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.23 E-value=0.0082 Score=55.12 Aligned_cols=28 Identities=11% Similarity=0.054 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g 103 (277)
..+..++|.|+.||||||+.+.|+..+.
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3667899999999999999999998764
No 372
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.22 E-value=0.011 Score=48.36 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=21.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+..++...
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 35568999999999999999999863
No 373
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.22 E-value=0.0092 Score=52.09 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999998643
No 374
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.20 E-value=0.016 Score=47.70 Aligned_cols=26 Identities=15% Similarity=0.088 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
....+|+|+|.+|+||||+...+...
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhC
Confidence 45678999999999999999999864
No 375
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.19 E-value=0.013 Score=45.86 Aligned_cols=23 Identities=17% Similarity=0.044 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+|+|+|.+|+||||+..++...
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999754
No 376
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.15 E-value=0.012 Score=48.63 Aligned_cols=26 Identities=8% Similarity=0.043 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+..+|...
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhC
Confidence 46688999999999999999999753
No 377
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.15 E-value=0.012 Score=47.84 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+..++...
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 56789999999999999999999864
No 378
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.14 E-value=0.012 Score=54.31 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+||.||||||+.+.|+--.
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 467789999999999999999998643
No 379
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.12 E-value=0.015 Score=52.81 Aligned_cols=26 Identities=15% Similarity=0.008 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.++..+.|.|+|||||||+|..++..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 37889999999999999999999876
No 380
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=95.11 E-value=0.35 Score=43.03 Aligned_cols=88 Identities=14% Similarity=0.017 Sum_probs=46.2
Q ss_pred ccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCC-HHHHHHhhc----chHHHHHHHHHHhchhHHHHHHhcCcEEEEeC
Q 023790 158 EIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCA-DNFIVTNRG----GSLKEKLEAYAELGKPLEDYYQKQKKLLEFQV 232 (277)
Q Consensus 158 ~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~-~e~l~~Rl~----~~~~~rl~~y~~~~~~l~~~y~~~~~li~Ida 232 (277)
+..+|+|--+... ..+.......++||+..| .+++.+|+. +..+++.+.-. .+...|.+.--.+.+
T Consensus 189 gk~viLdid~qg~---~~lk~~~~~pi~IFI~PpS~e~L~~r~~~r~~e~~~~~~~r~~----k~e~e~~~~fD~vIv-- 259 (292)
T 3tvt_A 189 GKHCILDVSGNAI---KRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTEEQAKKTYERAI----KMEQEFGEYFTGVVQ-- 259 (292)
T ss_dssp TCEEEECCCTHHH---HHHHHTTCCCEEEEECCSCHHHHHHTCTTSCTTHHHHHHHHHH----HHHHHHTTTCSEEEC--
T ss_pred CCcEEEeccchhh---hhcccccccceEEEEECCCHHHHHHHHhCCCchhHHHHHHHHH----HHHHhhhhhCCEEEE--
Confidence 4678888544332 333333223468888775 455666652 22232222211 122223221112333
Q ss_pred CCCHHHHHHHHHHHHHHccccc
Q 023790 233 GSAPLETWQGLLTALHLQHINA 254 (277)
Q Consensus 233 ~~s~eev~~~I~~~L~~~~~~~ 254 (277)
+.+.++.+++|.+++......+
T Consensus 260 Nddle~a~~~l~~iI~~e~~~~ 281 (292)
T 3tvt_A 260 GDTIEEIYSKVKSMIWSQSGPT 281 (292)
T ss_dssp CSSHHHHHHHHHHHHHHHTCSE
T ss_pred CcCHHHHHHHHHHHHHHhhCCC
Confidence 4589999999999998765444
No 381
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.11 E-value=0.012 Score=53.78 Aligned_cols=28 Identities=18% Similarity=0.025 Sum_probs=24.0
Q ss_pred ccCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 73 ~~~~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
+.| ++..+.|.|+|||||||+|..++..
T Consensus 57 Gl~-~G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 57 GLP-RGRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp SEE-TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred Ccc-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 444 6788999999999999999999865
No 382
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.10 E-value=0.016 Score=47.08 Aligned_cols=25 Identities=12% Similarity=0.058 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
....+|+|+|.+|+||||+...|..
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHc
Confidence 3568899999999999999999976
No 383
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.10 E-value=0.01 Score=56.40 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+.++.|+|+.||||||+++.|+..+
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 477889999999999999999998754
No 384
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.10 E-value=0.013 Score=53.99 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+||.||||||+.+.|+--.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 467789999999999999999998643
No 385
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.09 E-value=0.01 Score=48.92 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
....+|+|+|.+|+||||+..+|..
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHh
Confidence 4568899999999999999999863
No 386
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.09 E-value=0.011 Score=55.63 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.+.+|+|+|++|+||||++..|+..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999875
No 387
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.09 E-value=0.013 Score=51.53 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+.|+|++||||||+.+.|+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999765
No 388
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.06 E-value=0.013 Score=54.38 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+||.||||||+.+.|+--+
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 467789999999999999999998643
No 389
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.06 E-value=0.014 Score=50.99 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
+..+|+|+|+||+||||+...|...
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999754
No 390
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.04 E-value=0.012 Score=47.02 Aligned_cols=25 Identities=12% Similarity=0.149 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
+..+|+|+|.+|+||||+..++...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 5678999999999999999999864
No 391
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.04 E-value=0.018 Score=51.94 Aligned_cols=29 Identities=14% Similarity=0.053 Sum_probs=25.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCCCc
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPR 106 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~~~ 106 (277)
+..++|.|+||+|||++|+.+++.+.+..
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~ 52 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQ 52 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSS
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCC
Confidence 34589999999999999999999987643
No 392
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.04 E-value=0.012 Score=52.61 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
+..|+|.|+||+|||++|+.+++..
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEECCCCchHHHHHHHHHHhC
Confidence 3458999999999999999999854
No 393
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.03 E-value=0.014 Score=53.86 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+||.||||||+.+.|+--+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 467789999999999999999998643
No 394
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.02 E-value=0.016 Score=47.42 Aligned_cols=26 Identities=12% Similarity=0.023 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
....+|+|+|.+|+||||+..+|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 35678999999999999999999753
No 395
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.00 E-value=0.017 Score=52.52 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++.+|.|+|+||+||||+...|+..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467889999999999999999998754
No 396
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.00 E-value=0.015 Score=48.17 Aligned_cols=26 Identities=15% Similarity=-0.003 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+..+|...
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999999864
No 397
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.00 E-value=0.014 Score=49.70 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
....+|+|+|.+|+||||+...|...
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCC
Confidence 45688999999999999999999754
No 398
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.97 E-value=0.019 Score=48.35 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+..+|...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36789999999999999999999753
No 399
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.97 E-value=0.013 Score=47.09 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+|+|+|.+|+||||+..+|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 57999999999999999999764
No 400
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.96 E-value=0.015 Score=48.44 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
....+|+|+|.+|+||||+..+|...
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 46688999999999999999999874
No 401
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.96 E-value=0.017 Score=55.63 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++.+|+|+|.||+||||++..|+..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467789999999999999999999765
No 402
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.96 E-value=0.019 Score=53.89 Aligned_cols=27 Identities=11% Similarity=-0.140 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g 103 (277)
.+-.++|+||.||||||+.+.|...+.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 556899999999999999999988764
No 403
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.96 E-value=0.015 Score=53.86 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+||.||||||+.+.|+--+
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 467789999999999999999998643
No 404
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.95 E-value=0.014 Score=53.60 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+||.||||||+.+.|+--.
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 467789999999999999999998643
No 405
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.95 E-value=0.015 Score=48.57 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
.+..+|+|+|.+|+||||+..+|..
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC
T ss_pred cceEEEEEECcCCCCHHHHHHHHHc
Confidence 4668899999999999999999974
No 406
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.94 E-value=0.016 Score=48.65 Aligned_cols=26 Identities=15% Similarity=0.072 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
....+|+|+|.+|+||||+..+|...
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHC
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcC
Confidence 46688999999999999999999764
No 407
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.94 E-value=0.0093 Score=60.77 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
+..++|+|+||+|||++++.|++.+
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4458999999999999999999987
No 408
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.91 E-value=0.021 Score=50.00 Aligned_cols=26 Identities=19% Similarity=0.041 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
...++|+|+|.||+||||+...|...
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 35678999999999999999999754
No 409
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.91 E-value=0.017 Score=47.52 Aligned_cols=26 Identities=15% Similarity=0.031 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+..+|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 45688999999999999999999763
No 410
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.90 E-value=0.013 Score=54.61 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
.++-.+.|+|+|||||||++..|+-
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3778899999999999999998864
No 411
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.89 E-value=0.022 Score=49.17 Aligned_cols=26 Identities=8% Similarity=-0.087 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..++|++.|+||+||||++-.++..+
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHH
Confidence 34779999999999999988888764
No 412
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.89 E-value=0.013 Score=52.32 Aligned_cols=27 Identities=33% Similarity=0.286 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+..+
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 477889999999999999999998643
No 413
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.88 E-value=0.013 Score=51.44 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
. +-++.|+|+.||||||+.+.|+-.+
T Consensus 29 ~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 29 N-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp C-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred C-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5 7789999999999999999998654
No 414
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.88 E-value=0.015 Score=48.05 Aligned_cols=26 Identities=15% Similarity=0.063 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
....+|+|+|.+|+||||+...|...
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 45578999999999999999999863
No 415
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.87 E-value=0.015 Score=50.74 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=22.7
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHH
Q 023790 75 RRRGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 75 ~~~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
|.+..+|+|+|.||+||||+...|..
T Consensus 2 ~~~~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 2 PLHMVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp -CEEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHC
Confidence 35678899999999999999999975
No 416
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.87 E-value=0.016 Score=53.49 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+|+.||||||+.+.|+--+
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 577889999999999999999998643
No 417
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.85 E-value=0.015 Score=47.87 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
.+..+|+|+|.+|+||||+..++..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3556899999999999999999864
No 418
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.84 E-value=0.018 Score=47.63 Aligned_cols=26 Identities=8% Similarity=0.093 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+..++...
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 46789999999999999999998853
No 419
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=94.84 E-value=0.27 Score=49.17 Aligned_cols=159 Identities=9% Similarity=0.047 Sum_probs=76.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhCC-CccchhHHHHHhcC---CCCh-----hHHHHHHHHhccccchH-------
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV-PRISMSSIVRQDLS---PRSS-----LHKQIANAVNRGEVVSE------- 139 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g~-~~Is~~dllr~~~~---~~~~-----lg~~i~~~l~~G~~ip~------- 139 (277)
.++..|+|+|| ||+|+.+.|.+.+.- ..++....-|..-. .+.. -.+.....+.+|+.+..
T Consensus 529 ~~~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g~~ 605 (721)
T 2xkx_A 529 HYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHL 605 (721)
T ss_pred CCCCEEEEECC---CHHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECCcc
Confidence 34566888888 499999999987631 11122111121100 0100 12233444444543310
Q ss_pred -HHHHHHHHHHHHcCCccCccEEEEcCccCCHHHHHHHHhhcCcCEEEEecCCHHHHHHhhc-----chHHHHHHHHHHh
Q 023790 140 -DIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAEILDQLAEIDLVVNFKCADNFIVTNRG-----GSLKEKLEAYAEL 213 (277)
Q Consensus 140 -~~~~~ll~~~l~~~~~~~~~g~IldGfPrt~~qae~l~~~~~~d~vI~L~~~~e~l~~Rl~-----~~~~~rl~~y~~~ 213 (277)
-+..+-|.+.+.+ +..+|+|.-+.. +..+.......++||+..+.-..++++. +.+++|++.-.+
T Consensus 606 YGt~~~~v~~~~~~-----g~~~ildi~~~~---~~~l~~~~~~p~~ifi~pps~~~L~~l~~R~t~~~~~~rl~~a~~- 676 (721)
T 2xkx_A 606 YGTSVQSVREVAEQ-----GKHCILDVSANA---VRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFDRATK- 676 (721)
T ss_pred ceeeHHHHHHHHHC-----CCcEEEeCCHHH---HHHHHhcccCCEEEEEeCCcHHHHHHHhccCCHHHHHHHHHHHHH-
Confidence 0112334444443 567888864322 2233321112289999977544444452 234555544321
Q ss_pred chhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHHHcc
Q 023790 214 GKPLEDYYQKQKKLLEFQVGSAPLETWQGLLTALHLQH 251 (277)
Q Consensus 214 ~~~l~~~y~~~~~li~Ida~~s~eev~~~I~~~L~~~~ 251 (277)
++..|...--.+ |. +.+.++.+++|.+++....
T Consensus 677 ---~e~~~~~~fd~v-i~-Nd~l~~a~~~l~~~i~~~~ 709 (721)
T 2xkx_A 677 ---LEQEFTECFSAI-VE-GDSFEEIYHKVKRVIEDLS 709 (721)
T ss_pred ---HHHhccccCcEE-EE-CcCHHHHHHHHHHHHHhcc
Confidence 111111111123 33 3489999999999997653
No 420
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=94.83 E-value=0.017 Score=53.21 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
++..+|+|+|.+||||||+++.+.-.+
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~i~~ 57 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMRIIH 57 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHHHHh
Confidence 678999999999999999999985444
No 421
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.82 E-value=0.018 Score=47.81 Aligned_cols=25 Identities=8% Similarity=0.078 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
.+..+|+|+|.+|+||||+..+|..
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhc
Confidence 5668899999999999999999975
No 422
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.82 E-value=0.016 Score=53.53 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+||.||||||+.+.|+--.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 467789999999999999999998643
No 423
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.80 E-value=0.017 Score=52.01 Aligned_cols=29 Identities=17% Similarity=0.063 Sum_probs=24.8
Q ss_pred ccCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 73 ~~~~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
+.| ++..+.|.|+|||||||+|..++...
T Consensus 103 Gl~-~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIE-TRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEE-TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCC-CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 444 67789999999999999999998763
No 424
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.80 E-value=0.02 Score=47.89 Aligned_cols=26 Identities=15% Similarity=0.219 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+..+|...
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcC
Confidence 46789999999999999999999764
No 425
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.77 E-value=0.018 Score=49.54 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+..+|...
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCC
Confidence 45688999999999999999999754
No 426
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.76 E-value=0.0096 Score=53.61 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 577889999999999999999998765
No 427
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.74 E-value=0.019 Score=52.74 Aligned_cols=36 Identities=11% Similarity=-0.019 Sum_probs=27.6
Q ss_pred ccCCCCeEEEEEcCCCCChHHHHHHHHHHh-----CCCccch
Q 023790 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISM 109 (277)
Q Consensus 73 ~~~~~~~~Ivi~G~pGSGKSTla~~La~~~-----g~~~Is~ 109 (277)
+.| ++..++|.|+||+||||+|..++... .+.+|++
T Consensus 59 Gl~-~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 59 GLP-MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp SEE-TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred Ccc-CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 444 67789999999999999999998653 3345555
No 428
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.73 E-value=0.013 Score=59.75 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=23.6
Q ss_pred CCC-eEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRG-VHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~-~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++ ..++|.|+||+|||++|+.|++.+
T Consensus 585 ~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 585 NRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp SSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 344 379999999999999999999987
No 429
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.72 E-value=0.017 Score=48.12 Aligned_cols=28 Identities=11% Similarity=0.216 Sum_probs=23.2
Q ss_pred CCCCeEEEEEcCCCCChHHHHHH-HHHHh
Q 023790 75 RRRGVHWAFIGSPRAKKHVYAEM-LSKLL 102 (277)
Q Consensus 75 ~~~~~~Ivi~G~pGSGKSTla~~-La~~~ 102 (277)
+.+..+|+|+|.+|+||||+..+ +...+
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCC
Confidence 45778999999999999999998 54443
No 430
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.72 E-value=0.017 Score=51.60 Aligned_cols=28 Identities=11% Similarity=-0.133 Sum_probs=24.3
Q ss_pred ccCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 73 ~~~~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
+.| ++..+.|.|+||||||++|..++..
T Consensus 94 Gl~-~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLE-SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEE-TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred Ccc-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 444 6788999999999999999999865
No 431
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.71 E-value=0.012 Score=53.98 Aligned_cols=27 Identities=19% Similarity=0.439 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+||.||||||+.+.|+--.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 467789999999999999999998643
No 432
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.70 E-value=0.021 Score=48.41 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=21.5
Q ss_pred cCCCCeEEEEEcCCCCChHHHHHHHHH
Q 023790 74 ERRRGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 74 ~~~~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
.|.+..+|+|+|.+|+|||++..++..
T Consensus 9 ~P~k~~KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEEECcCCcCHHHHHHHHHh
Confidence 456778999999999999999999875
No 433
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.67 E-value=0.019 Score=49.53 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
....+|+|+|.||+||||+...|...
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCC
Confidence 46689999999999999999998753
No 434
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.66 E-value=0.015 Score=47.07 Aligned_cols=25 Identities=20% Similarity=0.139 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
++..+|+|+|.+|+||||+..+|..
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc
Confidence 3668899999999999999998853
No 435
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.64 E-value=0.019 Score=53.50 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
..+-.+.|+||.||||||+.+.|+.-
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 57788999999999999999999864
No 436
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.63 E-value=0.016 Score=56.64 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=23.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~g~ 104 (277)
+..++|.|+||+||||+++.|+..+..
T Consensus 60 g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 60 KRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred CCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 347999999999999999999997753
No 437
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.63 E-value=0.012 Score=53.27 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhC
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g 103 (277)
.+..+.|.|++||||||+.+.|+..+.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 566899999999999999999987653
No 438
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.61 E-value=0.026 Score=48.84 Aligned_cols=29 Identities=14% Similarity=0.090 Sum_probs=23.5
Q ss_pred cCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 74 ~~~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
....+.+.+++|++||||||.+-.++.++
T Consensus 15 ~~~~g~l~v~~G~MgsGKTT~lL~~~~r~ 43 (234)
T 2orv_A 15 SKTRGQIQVILGPMFSGKSTELMRRVRRF 43 (234)
T ss_dssp ---CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHHHH
Confidence 33578899999999999999998888776
No 439
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.59 E-value=0.026 Score=50.33 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
++..|.|+|++|+||||++..||..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56788889999999999999999765
No 440
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.57 E-value=0.02 Score=46.56 Aligned_cols=26 Identities=8% Similarity=-0.017 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+..+|...
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 35678999999999999999999864
No 441
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.56 E-value=0.025 Score=46.72 Aligned_cols=26 Identities=8% Similarity=0.020 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+..++...
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 35688999999999999999999853
No 442
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.53 E-value=0.013 Score=47.10 Aligned_cols=25 Identities=16% Similarity=0.058 Sum_probs=12.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
....+|+|+|.+|+||||+..+|..
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp SEEEEEEEECCCCC-----------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3567899999999999999998874
No 443
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.52 E-value=0.023 Score=56.88 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.+..++|+|+||+|||++++.|++.+
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 45668999999999999999999986
No 444
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.52 E-value=0.023 Score=50.78 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
+.+|.+.|++|+||||++..|+..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7788999999999999999999765
No 445
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.50 E-value=0.025 Score=50.13 Aligned_cols=26 Identities=15% Similarity=0.063 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCC
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEV 104 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~ 104 (277)
..++|.|++|+|||++++.+++..+.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~ 56 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNL 56 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCC
Confidence 37999999999999999999988653
No 446
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.43 E-value=0.022 Score=51.98 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=21.9
Q ss_pred CCeEEEE--EcCCCCChHHHHHHHHHHh
Q 023790 77 RGVHWAF--IGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 77 ~~~~Ivi--~G~pGSGKSTla~~La~~~ 102 (277)
.+..++| .|+||+||||+++.+++.+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 3456777 9999999999999998865
No 447
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.40 E-value=0.028 Score=46.10 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
...+|+|+|.||+||||+..++...
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999864
No 448
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.40 E-value=0.023 Score=52.29 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.+..+.|+|++|+||||+.+.|+...
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCCEEEEECCCCccHHHHHHHHhccc
Confidence 45689999999999999999998543
No 449
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.39 E-value=0.012 Score=53.95 Aligned_cols=27 Identities=19% Similarity=0.428 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+||.||||||+.+.|+--.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 467789999999999999999998643
No 450
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.36 E-value=0.032 Score=52.62 Aligned_cols=27 Identities=22% Similarity=0.140 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++.+|+|.|++|+||||++..||..+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456788899999999999999999765
No 451
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.32 E-value=0.023 Score=51.08 Aligned_cols=25 Identities=12% Similarity=-0.121 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
+..+++|.|+.||||||+.+.|...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4567899999999999999999864
No 452
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.31 E-value=0.029 Score=50.96 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=22.8
Q ss_pred CccCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 72 ~~~~~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
++.| ++ ++.|.|+|||||||+|-.++..
T Consensus 24 GGl~-~G-iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 24 GGMQ-SG-LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp CCBC-SE-EEEEEESSSSSHHHHHHHHHHH
T ss_pred CCCc-CC-eEEEECCCCCCHHHHHHHHHHH
Confidence 4555 45 7999999999999998887654
No 453
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.27 E-value=0.037 Score=48.87 Aligned_cols=26 Identities=15% Similarity=0.028 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
...++|+|+|.||+||||+...|...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 45678999999999999999999754
No 454
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.26 E-value=0.027 Score=53.08 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++|.|+|||||||++..+++.+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998876
No 455
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.25 E-value=0.027 Score=50.26 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.+..+.|+|++|+||||+.+.|+ ..
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 56789999999999999999998 54
No 456
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.16 E-value=0.033 Score=45.05 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhC
Q 023790 80 HWAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 80 ~Ivi~G~pGSGKSTla~~La~~~g 103 (277)
..+|+|+.||||||+.+.|.--++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 789999999999999999987654
No 457
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.14 E-value=0.026 Score=53.10 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=21.6
Q ss_pred CCCeE--EEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVH--WAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~--Ivi~G~pGSGKSTla~~La~~ 101 (277)
..|-. +.|+|++||||||+.+.|+..
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 35555 999999999999999999864
No 458
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.12 E-value=0.021 Score=54.97 Aligned_cols=26 Identities=8% Similarity=0.121 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.+..++|+|++||||||+.+.|+..+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 56679999999999999999998765
No 459
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.12 E-value=0.028 Score=50.09 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|.|+|.||+||||+...|...
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCC
Confidence 35568999999999999999999753
No 460
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.10 E-value=0.027 Score=54.58 Aligned_cols=28 Identities=11% Similarity=0.182 Sum_probs=24.7
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 75 ~~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
|..+-++.|+|+.||||||+.+.|+-.+
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3678899999999999999999998653
No 461
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.10 E-value=0.035 Score=49.73 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++-.++|.|+||+||||+|..++...
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 477889999999999999999998654
No 462
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.10 E-value=0.043 Score=46.89 Aligned_cols=27 Identities=15% Similarity=-0.104 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++.+.+++|++||||||.+-.++.++
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 467889999999999999999998876
No 463
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.08 E-value=0.024 Score=50.49 Aligned_cols=25 Identities=12% Similarity=0.084 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+.|+|++||||||+.+.|+..
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred cCCeEEEECCCCCcHHHHHHHhccc
Confidence 4678899999999999999999743
No 464
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.08 E-value=0.029 Score=52.56 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+.|+|++||||||+.+.|+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4558999999999999999999873
No 465
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.00 E-value=0.034 Score=48.94 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
...+|+|+|.||+||||+...|...
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCC
Confidence 3568999999999999999999863
No 466
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.99 E-value=0.035 Score=46.82 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
....+|+|+|.||+||||+..++..
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457899999999999999999874
No 467
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.92 E-value=0.018 Score=47.94 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
...++|+|+|.+|+||||+...|...
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 35678999999999999999999765
No 468
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.92 E-value=0.012 Score=57.65 Aligned_cols=26 Identities=23% Similarity=0.440 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhCC
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKLLEV 104 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~~g~ 104 (277)
..++|.|+||+|||++|+.+++..+.
T Consensus 328 ~~vLL~GppGtGKT~LAr~la~~~~r 353 (595)
T 3f9v_A 328 IHILIIGDPGTAKSQMLQFISRVAPR 353 (595)
T ss_dssp CCEEEEESSCCTHHHHHHSSSTTCSC
T ss_pred cceEEECCCchHHHHHHHHHHHhCCC
Confidence 36999999999999999999998754
No 469
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.91 E-value=0.031 Score=48.61 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q 023790 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 79 ~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
++|+|+|.||+||||+...|...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 57999999999999999999754
No 470
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.89 E-value=0.033 Score=49.71 Aligned_cols=27 Identities=19% Similarity=0.129 Sum_probs=23.2
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 75 ~~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
|..+-.|.|+|.||+||||+...|...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 456678999999999999999999753
No 471
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.88 E-value=0.036 Score=54.03 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
...++|.|+||+||||++..+...+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999998754
No 472
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.84 E-value=0.038 Score=48.40 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
+..+|+|+|.||+||||+...|...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999764
No 473
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.81 E-value=0.041 Score=51.80 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.++-.++|.|+||+||||++..++..
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 46778999999999999999998774
No 474
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.81 E-value=0.037 Score=51.01 Aligned_cols=37 Identities=16% Similarity=0.060 Sum_probs=27.6
Q ss_pred ccCCCCeEEEEEcCCCCChHHHHHHHHHHh-----CCCccchh
Q 023790 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMS 110 (277)
Q Consensus 73 ~~~~~~~~Ivi~G~pGSGKSTla~~La~~~-----g~~~Is~~ 110 (277)
+.| ++..++|.|+||+||||+|..++... .+.+|+++
T Consensus 70 Gl~-~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 70 GIP-RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp SEE-TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred Ccc-CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 444 66788899999999999999988753 34455553
No 475
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.76 E-value=0.012 Score=48.13 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=7.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.+..+|+|+|.+|+||||+..+|...
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEEEC-----------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhC
Confidence 45678999999999999999988754
No 476
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.75 E-value=0.045 Score=51.51 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.+.+|.|.|++||||||++..|+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56788899999999999999999876
No 477
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=93.75 E-value=0.014 Score=52.72 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
++..+|+|+|.+|+||||+..+|..
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~ 187 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKL 187 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCS
T ss_pred cCcceEEEECCCCccHHHHHHHHhC
Confidence 4567899999999999999998864
No 478
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.63 E-value=0.044 Score=50.09 Aligned_cols=28 Identities=11% Similarity=0.073 Sum_probs=25.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g 103 (277)
.++-++.|+|++||||||+.+.|+....
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5788999999999999999999998764
No 479
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.62 E-value=0.036 Score=53.22 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=20.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEML 98 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~L 98 (277)
.++-.+.|+|++||||||+++.+
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHH
Confidence 37788999999999999999994
No 480
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.58 E-value=0.039 Score=49.83 Aligned_cols=33 Identities=21% Similarity=0.041 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhCCCccchh
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~~g~~~Is~~ 110 (277)
.+.-++|.|++|+||||+|..|.++ |...++-|
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD 175 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLVADD 175 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESS
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCceecCC
Confidence 5677999999999999999999886 77666443
No 481
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.57 E-value=0.018 Score=47.86 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
....+|+|+|.+|+||||+..+|..
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTT
T ss_pred cCccEEEEECCCCCCHHHHHHHHhc
Confidence 4568899999999999999998863
No 482
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=93.52 E-value=0.046 Score=50.83 Aligned_cols=25 Identities=16% Similarity=0.379 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
.++.++.|+|+||+||||+.+.|..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 5788999999999999999999987
No 483
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.51 E-value=0.046 Score=51.55 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=25.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~g 103 (277)
.++-++.|+|++||||||+.+.|+....
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 5788899999999999999999998764
No 484
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=92.57 E-value=0.014 Score=48.10 Aligned_cols=25 Identities=8% Similarity=0.137 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
.+..+|+|+|.+|+||||+..+|..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 4678899999999999999988864
No 485
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.47 E-value=0.043 Score=53.05 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-++.|+|+.||||||+.+.|+-.+
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 477889999999999999999998643
No 486
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.47 E-value=0.042 Score=53.49 Aligned_cols=27 Identities=19% Similarity=0.402 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 577889999999999999999998765
No 487
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=93.42 E-value=0.069 Score=46.09 Aligned_cols=26 Identities=8% Similarity=0.095 Sum_probs=23.3
Q ss_pred CCCCeEEEEEcCC---------CCChHHHHHHHHH
Q 023790 75 RRRGVHWAFIGSP---------RAKKHVYAEMLSK 100 (277)
Q Consensus 75 ~~~~~~Ivi~G~p---------GSGKSTla~~La~ 100 (277)
+.+..+|+|+|.+ |+||||+..+|..
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 3567899999999 9999999999986
No 488
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.41 E-value=0.039 Score=49.22 Aligned_cols=24 Identities=13% Similarity=0.034 Sum_probs=20.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
-...|+|+|++|+||||+.+.|..
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CCEEEEEECCCCCCHHHHHHHHhC
Confidence 346789999999999999999864
No 489
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.37 E-value=0.035 Score=54.08 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 477889999999999999999998765
No 490
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.32 E-value=0.048 Score=53.58 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=24.7
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 75 ~~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
+..+-++.|+|+.||||||+.+.|+-.+
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 3678899999999999999999998654
No 491
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.26 E-value=0.046 Score=52.46 Aligned_cols=27 Identities=7% Similarity=-0.021 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
.++-.+.|.|++||||||+++.++...
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 477889999999999999999998653
No 492
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.23 E-value=0.056 Score=50.63 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
...+|+|+|+||+||||+...|...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCceEEEECCCCCCHHHHHHHHhCC
Confidence 5689999999999999999999764
No 493
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=93.08 E-value=0.057 Score=48.06 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
...+|+|+|.||+||||+..++...
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4578999999999999999998654
No 494
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.02 E-value=0.041 Score=53.70 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 467889999999999999999998765
No 495
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.02 E-value=0.02 Score=51.59 Aligned_cols=24 Identities=17% Similarity=0.183 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q 023790 77 RGVHWAFIGSPRAKKHVYAEMLSK 100 (277)
Q Consensus 77 ~~~~Ivi~G~pGSGKSTla~~La~ 100 (277)
.+..+.|+|++|+||||+.+.|+.
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCCCHHHHHHHhcc
Confidence 567899999999999999999864
No 496
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.87 E-value=0.068 Score=50.16 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.++-.++|.|+||+||||+|..++..
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~ 223 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQN 223 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 36778999999999999999998875
No 497
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.87 E-value=0.046 Score=53.42 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
..+-.+.|+|+.||||||+.+.|+..+
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 578899999999999999999998765
No 498
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=92.81 E-value=0.066 Score=48.70 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La~~ 101 (277)
.....|+|+|+||+||||+...|+..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36678999999999999999999764
No 499
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=92.81 E-value=0.017 Score=47.41 Aligned_cols=24 Identities=13% Similarity=0.061 Sum_probs=21.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHH
Q 023790 76 RRGVHWAFIGSPRAKKHVYAEMLS 99 (277)
Q Consensus 76 ~~~~~Ivi~G~pGSGKSTla~~La 99 (277)
....+|+|+|.+|+||||+..+|.
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~ 54 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFA 54 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSB
T ss_pred CcceEEEEECCCCCCHHHHHHHHh
Confidence 456889999999999999988775
No 500
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.75 E-value=0.063 Score=48.03 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q 023790 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (277)
Q Consensus 78 ~~~Ivi~G~pGSGKSTla~~La~~~ 102 (277)
++.++|.||||+||||.|+.|++.+
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~ 42 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYV 42 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhC
Confidence 5689999999999999999999864
Done!