BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>023791
MLTVHPPGAISKCLGYQGYNTLHDASPCKIANVNSSTRVAIYPSPVQDPCKCVVRSSSFY
WQGRDQLDNHHFPCRVPSKKWLCRSHDPISPDNEYRSSRNIAISLFRRYRNVIDRGGGDN
LKEFIDAGVNAYALGCTDEGLRKELTAMKESGVEIDALQSYGGGTSLKSKIFSEEVDECI
LWLSIIFITILCTPQPTIVRWSSTPPVSDEIRLQWKGFCALIANAYYVRGMAWLPVKTLQ
LEQMAVVGCAEEPSVVASRMRLVFSTLEVVSPQWPRV

High Scoring Gene Products

Symbol, full name Information P value
AT1G62250 protein from Arabidopsis thaliana 2.2e-80

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  023791
        (277 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2018082 - symbol:AT1G62250 species:3702 "Arabi...   807  2.2e-80   1


>TAIR|locus:2018082 [details] [associations]
            symbol:AT1G62250 species:3702 "Arabidopsis thaliana"
            [GO:0005739 "mitochondrion" evidence=ISM] [GO:0015996 "chlorophyll
            catabolic process" evidence=RCA] EMBL:CP002684
            GenomeReviews:CT485782_GR EMBL:AC000375 EMBL:AY065271 EMBL:AY096524
            IPI:IPI00525959 PIR:A96649 RefSeq:NP_176415.1 UniGene:At.28536
            UniGene:At.66957 PRIDE:O04589 ProMEX:O04589
            EnsemblPlants:AT1G62250.1 GeneID:842522 KEGG:ath:AT1G62250
            TAIR:At1g62250 eggNOG:NOG245508 HOGENOM:HOG000006461
            InParanoid:O04589 OMA:QWKGFCA PhylomeDB:O04589
            ProtClustDB:CLSN2682085 ArrayExpress:O04589 Genevestigator:O04589
            Uniprot:O04589
        Length = 267

 Score = 807 (289.1 bits), Expect = 2.2e-80, P = 2.2e-80
 Identities = 154/203 (75%), Positives = 175/203 (86%)

Query:    77 PSKKWL-CRS-HDPISPDNEYRSSRNIAISLFRRYRNVIDRGGGDNLKEFIDAGVNAYAL 134
             P ++W+ C S ++ IS D+EYRSS NIAISL RRYR VI RG G+ LKEFI AGVNAYAL
Sbjct:    65 PRRRWMFCNSRNNSISSDDEYRSSPNIAISLLRRYRTVIGRGEGETLKEFISAGVNAYAL 124

Query:   135 GCTDEGLRKELTAMKESGVEIDALQSYGGGTSLKSKIFSEEVDECILWLSIIFITILCTP 194
             GCTDE LRKEL AMK+SG+EI+ +++YGG T  KSKI   EVDECILWL I+FITILCTP
Sbjct:   125 GCTDEDLRKELMAMKDSGLEIERMENYGGSTQTKSKITLSEVDECILWLRIVFITILCTP 184

Query:   195 QPTIVRWSSTPPVSDEIRLQWKGFCALIANAYYVRGMAWLPVKTLQLEQMAVVGCAEEPS 254
             QPT++RWSSTP VSDEI  +W+GFCA+IANAYY+RGMAWLPVKTLQLEQMAV G +EEPS
Sbjct:   185 QPTVIRWSSTPSVSDEILSKWRGFCAVIANAYYIRGMAWLPVKTLQLEQMAVTGQSEEPS 244

Query:   255 VVASRMRLVFSTLEVVSPQWPRV 277
             VVASRMRLVFSTLEVVSPQWPRV
Sbjct:   245 VVASRMRLVFSTLEVVSPQWPRV 267


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.433    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      277       277   0.00080  115 3  11 22  0.48    33
                                                     33  0.41    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  619 (66 KB)
  Total size of DFA:  232 KB (2125 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.05u 0.09s 23.14t   Elapsed:  00:00:01
  Total cpu time:  23.05u 0.09s 23.14t   Elapsed:  00:00:01
  Start:  Fri May 10 21:06:05 2013   End:  Fri May 10 21:06:06 2013

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