BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023791
         (277 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3TSC|A Chain A, Crystal Structure Of Short Chain Dehydrogenase Map_2410
           From Mycobacterium Paratuberculosis Bound To Nad
 pdb|3TSC|B Chain B, Crystal Structure Of Short Chain Dehydrogenase Map_2410
           From Mycobacterium Paratuberculosis Bound To Nad
 pdb|3TSC|C Chain C, Crystal Structure Of Short Chain Dehydrogenase Map_2410
           From Mycobacterium Paratuberculosis Bound To Nad
 pdb|3TSC|D Chain D, Crystal Structure Of Short Chain Dehydrogenase Map_2410
           From Mycobacterium Paratuberculosis Bound To Nad
          Length = 277

 Score = 29.3 bits (64), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 83  CRSHDPISPDNEYRSSRNIAISLFRRYRNVIDRGGGDNLKEFIDAGVNA 131
           C  +DP SPD+   + R +  +  R    V+D    D L++ +D GV A
Sbjct: 50  CVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDRLRKVVDDGVAA 98


>pdb|1UWY|A Chain A, Crystal Structure Of Human Carboxypeptidase M
          Length = 426

 Score = 28.1 bits (61), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 24  DASPCKIANVNSSTRVAIYPSPVQDPCKCVVRSSSFYWQGRDQLD----NHHFP 73
           D    +I N+ +STR+ I PS   D  + V +   +Y  GR+  +    N +FP
Sbjct: 87  DGKDPEITNLINSTRIHIMPSMNPDGFEAVKKPDCYYSIGRENYNQYDLNRNFP 140


>pdb|3CT6|A Chain A, Crystal Structure Of Dham Of L. Lactis
 pdb|3CT6|B Chain B, Crystal Structure Of Dham Of L. Lactis
          Length = 131

 Score = 28.1 bits (61), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 17/41 (41%)

Query: 106 FRRYRNVIDRGGGDNLKEFIDAGVNAYALGCTDEGLRKELT 146
           F R  N I+    DNL  F D G     L    E   KELT
Sbjct: 46  FDRVMNAIEENEADNLLTFFDLGSARMNLDLVSEMTDKELT 86


>pdb|3CR3|C Chain C, Structure Of A Transient Complex Between Dha-Kinase
           Subunits Dham And Dhal From Lactococcus Lactis
 pdb|3CR3|D Chain D, Structure Of A Transient Complex Between Dha-Kinase
           Subunits Dham And Dhal From Lactococcus Lactis
          Length = 121

 Score = 28.1 bits (61), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 17/41 (41%)

Query: 106 FRRYRNVIDRGGGDNLKEFIDAGVNAYALGCTDEGLRKELT 146
           F R  N I+    DNL  F D G     L    E   KELT
Sbjct: 44  FDRVXNAIEENEADNLLTFFDLGSARXNLDLVSEXTDKELT 84


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.433 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,692,178
Number of Sequences: 62578
Number of extensions: 354010
Number of successful extensions: 727
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 723
Number of HSP's gapped (non-prelim): 4
length of query: 277
length of database: 14,973,337
effective HSP length: 98
effective length of query: 179
effective length of database: 8,840,693
effective search space: 1582484047
effective search space used: 1582484047
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)