Query 023791
Match_columns 277
No_of_seqs 13 out of 15
Neff 1.7
Searched_HMMs 29240
Date Mon Mar 25 12:51:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023791.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023791hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cfo_A Glutamyl-tRNA synthetas 30.1 50 0.0017 30.9 4.4 38 94-145 71-108 (492)
2 4awe_A Endo-beta-D-1,4-mannana 29.1 16 0.00055 27.9 0.8 36 122-157 19-55 (387)
3 3vf0_A Vinculin, metavinculin; 27.8 50 0.0017 30.1 3.9 59 90-150 132-203 (283)
4 2ee7_A Sperm flagellar protein 27.3 31 0.0011 27.4 2.2 32 161-196 2-33 (127)
5 3cw1_L U1 small nuclear ribonu 24.7 16 0.00055 27.5 0.1 58 43-135 2-60 (77)
6 1nzj_A Hypothetical protein YA 24.4 76 0.0026 27.7 4.3 22 121-143 89-110 (298)
7 3vjz_A DMP19, putative unchara 24.0 21 0.00073 30.1 0.7 13 216-228 62-74 (166)
8 2kso_A Ephrin type-A receptor 24.0 37 0.0013 24.4 1.9 35 116-152 27-63 (82)
9 1j09_A Glutamyl-tRNA synthetas 22.6 91 0.0031 29.0 4.7 35 95-143 80-114 (468)
10 2ja2_A Glutamyl-tRNA synthetas 20.9 99 0.0034 29.1 4.6 37 94-144 84-120 (498)
No 1
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=30.12 E-value=50 Score=30.92 Aligned_cols=38 Identities=32% Similarity=0.480 Sum_probs=26.1
Q ss_pred ccccchhhHHHHHHhhhHhccCCCCcchHHHHHhhhheeeccCCcHhHHHHH
Q 023791 94 EYRSSRNIAISLFRRYRNVIDRGGGDNLKEFIDAGVNAYALGCTDEGLRKEL 145 (277)
Q Consensus 94 e~rssrniaisL~rRY~~Vi~rg~~~nlkeFi~AgV~AYalGcteEgLrkEL 145 (277)
.||.|..+. +|+.+ ++..++.| .||.|-||.|.|.+.-
T Consensus 71 ~~~QS~r~~-----~y~~~--------~~~Li~~G-~AY~c~ct~~el~~~r 108 (492)
T 2cfo_A 71 PYFQSDRLD-----LYRQA--------IQTLLDKG-LAYYCYCTPEELEALR 108 (492)
T ss_dssp EEEGGGCHH-----HHHHH--------HHHHHHTT-SEEEECCCHHHHHHHH
T ss_pred CccccCCHH-----HHHHH--------HHHHHHCC-CceEecCCHHHHHHHH
Confidence 577777765 45544 34566666 5999999999886543
No 2
>4awe_A Endo-beta-D-1,4-mannanase; hydrolase, endo-mannanase, glycosyl hydrolase, GH5; HET: NAG; 1.40A {Neurospora sitophila}
Probab=29.09 E-value=16 Score=27.94 Aligned_cols=36 Identities=31% Similarity=0.467 Sum_probs=28.0
Q ss_pred HHHHHhhhheeeccC-CcHhHHHHHHhccccccchhh
Q 023791 122 KEFIDAGVNAYALGC-TDEGLRKELTAMKESGVEIDA 157 (277)
Q Consensus 122 keFi~AgV~AYalGc-teEgLrkEL~~~~~sg~eie~ 157 (277)
|.|.=.|+|+|.++. +.|++++.|..|++.|+..-+
T Consensus 19 ~~~~~~G~N~~~~~~~~~~~~~~~l~~~~~~G~N~iR 55 (387)
T 4awe_A 19 KDFYFAGSNAYYFPFNDQPDIEKGMTAARAAGLTVFR 55 (387)
T ss_dssp EECCEEEEECTTGGGSCHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEEEEEccCcCCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 456667888877664 678899999999999987433
No 3
>3vf0_A Vinculin, metavinculin; cytoskeletal F-actin binding protein, CEL adhesion-protein binding complex; HET: EPE; 2.54A {Homo sapiens}
Probab=27.85 E-value=50 Score=30.06 Aligned_cols=59 Identities=24% Similarity=0.392 Sum_probs=43.2
Q ss_pred CCCcccccchhhHHHHHHhhhHhccCCCCcchHHHHHhhh-------------heeeccCCcHhHHHHHHhccc
Q 023791 90 SPDNEYRSSRNIAISLFRRYRNVIDRGGGDNLKEFIDAGV-------------NAYALGCTDEGLRKELTAMKE 150 (277)
Q Consensus 90 s~dde~rssrniaisL~rRY~~Vi~rg~~~nlkeFi~AgV-------------~AYalGcteEgLrkEL~~~~~ 150 (277)
+.+|=.+-.+++|.-.+.=|..+ |||+++-+|+|.+.- ...|-.|+|.+++++|+..-+
T Consensus 132 ~~NdII~~AK~MA~mM~~Ms~ft--RGg~kTt~DLI~~AK~IAe~g~~l~k~ar~iA~qCtD~r~K~~LL~~le 203 (283)
T 3vf0_A 132 KGNDIIAAAKRMALLMAEMSRLV--RGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCE 203 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHT--TCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBCCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHh
Confidence 45677788888888777777644 455588898887642 245667999999999996543
No 4
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.29 E-value=31 Score=27.39 Aligned_cols=32 Identities=19% Similarity=0.389 Sum_probs=27.1
Q ss_pred cCCccccccccchhhhhhHHHHHHHhhhhhhccCCC
Q 023791 161 YGGGTSLKSKIFSEEVDECILWLSIIFITILCTPQP 196 (277)
Q Consensus 161 yggsts~kski~s~Ev~ECIlwlsIvfITIlctPqp 196 (277)
.||||++...+..+|..|=+.||- .|-++-++
T Consensus 2 ~~~~~~~~~~l~~ee~~el~~WL~----~l~Ls~~~ 33 (127)
T 2ee7_A 2 SSGSSGMASSVDEEALHQLYLWVD----NIPLSRPK 33 (127)
T ss_dssp CCCCCSCCSSCCHHHHHHHHHHHH----HSCCSCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHH----cCCCCCCC
Confidence 589999999999999999999997 56555544
No 5
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=24.68 E-value=16 Score=27.45 Aligned_cols=58 Identities=19% Similarity=0.300 Sum_probs=34.0
Q ss_pred cccccCCCCcee-ecccccccccccccCCCCCcccCCCccccccCCCCCCCcccccchhhHHHHHHhhhHhccCCCCcch
Q 023791 43 PSPVQDPCKCVV-RSSSFYWQGRDQLDNHHFPCRVPSKKWLCRSHDPISPDNEYRSSRNIAISLFRRYRNVIDRGGGDNL 121 (277)
Q Consensus 43 p~~~~~pc~n~~-~~ss~s~~~~~~~~~~h~~~~v~~~~wl~~~~~~~s~dde~rssrniaisL~rRY~~Vi~rg~~~nl 121 (277)
|+-+|.=|...+ .+|...++.+.+-+.|. +|.+ +-|+++.+ +..
T Consensus 2 PkYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~---------------------------~nv~----~yy~~~~~----~~~ 46 (77)
T 3cw1_L 2 PKFYCDYCDTYLTHDSPSVRKTHCSGRKHK---------------------------ENVK----DYYCKWME----EQA 46 (77)
T ss_pred CCcccccCCceecCCCHHHHHHHHccHHHH---------------------------HHHH----HHHHHHHH----HHH
Confidence 777888888877 44444355555444222 2222 22333332 667
Q ss_pred HHHHHhhhheeecc
Q 023791 122 KEFIDAGVNAYALG 135 (277)
Q Consensus 122 keFi~AgV~AYalG 135 (277)
|++|+..+.||.-|
T Consensus 47 ~~~id~~~~a~~~g 60 (77)
T 3cw1_L 47 QSLIDKTTAAFQQG 60 (77)
T ss_pred HHHHHHHHHHhhcC
Confidence 88888888888765
No 6
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=24.44 E-value=76 Score=27.65 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=16.4
Q ss_pred hHHHHHhhhheeeccCCcHhHHH
Q 023791 121 LKEFIDAGVNAYALGCTDEGLRK 143 (277)
Q Consensus 121 lkeFi~AgV~AYalGcteEgLrk 143 (277)
++..++.| .||.|-||.|+|++
T Consensus 89 ~~~L~~~G-~aY~c~ct~~~l~~ 110 (298)
T 1nzj_A 89 LAWLHEQG-LSYYCTCTRARIQS 110 (298)
T ss_dssp HHHHHHTT-CEEEECCCHHHHHH
T ss_pred HHHHHHcC-CcccCcCCHHHHHH
Confidence 34455666 59999999998865
No 7
>3vjz_A DMP19, putative uncharacterized protein; helix bundle, DNA mimic, gene regulation; 1.80A {Neisseria meningitidis}
Probab=24.00 E-value=21 Score=30.12 Aligned_cols=13 Identities=46% Similarity=0.667 Sum_probs=11.0
Q ss_pred hhHHHHHHhHHHh
Q 023791 216 KGFCALIANAYYV 228 (277)
Q Consensus 216 kGFcalIaNaYy~ 228 (277)
-||+.+|+|||=.
T Consensus 62 GGFvQLI~NGyG~ 74 (166)
T 3vjz_A 62 GGFVQLIASGYGE 74 (166)
T ss_dssp HHHHHHHHHSCHH
T ss_pred CChHhhhhcCchh
Confidence 4999999999843
No 8
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}
Probab=24.00 E-value=37 Score=24.37 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=24.3
Q ss_pred CCCcchHHHHHhhhh--eeeccCCcHhHHHHHHhccccc
Q 023791 116 GGGDNLKEFIDAGVN--AYALGCTDEGLRKELTAMKESG 152 (277)
Q Consensus 116 g~~~nlkeFi~AgV~--AYalGcteEgLrkEL~~~~~sg 152 (277)
|.++-..-|+.+|+. ..-+.+|+||| |||. +..-|
T Consensus 27 gL~qY~~~F~~~gid~~~~L~~lt~~DL-~~lG-I~~~G 63 (82)
T 2kso_A 27 KMQQYTEHFMAAGYTAIEKVVQMTNDDI-KRIG-VRLPG 63 (82)
T ss_dssp TCTTHHHHHHHTTCCSHHHHTTCCHHHH-HHHH-CCCTT
T ss_pred CCHHHHHHHHHcCCChHHHHHhCCHHHH-HHCC-CCChh
Confidence 566667788888887 35578999999 5654 43333
No 9
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=22.60 E-value=91 Score=28.97 Aligned_cols=35 Identities=31% Similarity=0.453 Sum_probs=24.8
Q ss_pred cccchhhHHHHHHhhhHhccCCCCcchHHHHHhhhheeeccCCcHhHHH
Q 023791 95 YRSSRNIAISLFRRYRNVIDRGGGDNLKEFIDAGVNAYALGCTDEGLRK 143 (277)
Q Consensus 95 ~rssrniaisL~rRY~~Vi~rg~~~nlkeFi~AgV~AYalGcteEgLrk 143 (277)
||.|.+.. +|+.. ++..++.| .||.|-||.|.|.+
T Consensus 80 ~~QS~r~~-----~y~~~--------~~~L~~~G-~aY~c~ct~~el~~ 114 (468)
T 1j09_A 80 YRQSERLP-----LYQKY--------AEELLKRG-WAYRAFETPEELEQ 114 (468)
T ss_dssp CBGGGCHH-----HHHHH--------HHHHHHHT-SEEEECCCHHHHHH
T ss_pred eeccCCHH-----HHHHH--------HHHHHHcC-CeEEcCCCHHHHHH
Confidence 77777654 45543 45567777 59999999998854
No 10
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=20.85 E-value=99 Score=29.14 Aligned_cols=37 Identities=35% Similarity=0.536 Sum_probs=26.4
Q ss_pred ccccchhhHHHHHHhhhHhccCCCCcchHHHHHhhhheeeccCCcHhHHHH
Q 023791 94 EYRSSRNIAISLFRRYRNVIDRGGGDNLKEFIDAGVNAYALGCTDEGLRKE 144 (277)
Q Consensus 94 e~rssrniaisL~rRY~~Vi~rg~~~nlkeFi~AgV~AYalGcteEgLrkE 144 (277)
-||.|.... +|+.+ ++..++.| .||.|-||.|+|.+.
T Consensus 84 ~~~QS~r~~-----~y~~~--------~~~L~~~g-~aY~c~ct~eel~~~ 120 (498)
T 2ja2_A 84 PYRQSQRAE-----IYRDV--------LARLLAAG-EAYHAFSTPEEVEAR 120 (498)
T ss_dssp CCBGGGCHH-----HHHHH--------HHHHHHTT-SEEEECCCHHHHHHH
T ss_pred CeeeecCHH-----HHHHH--------HHHHHHcC-CeEEeCCCHHHHHHH
Confidence 477776643 45443 45677888 699999999998654
Done!