BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023793
(277 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2QY07|CCDA2_ORYSJ Cytochrome c-type biogenesis ccda-like chloroplastic protein 2
OS=Oryza sativa subsp. japonica GN=CCDA2 PE=2 SV=1
Length = 362
Score = 430 bits (1105), Expect = e-120, Method: Compositional matrix adjust.
Identities = 215/258 (83%), Positives = 243/258 (94%), Gaps = 1/258 (0%)
Query: 21 MADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLT 80
+AD S+GD FG LYSAGQQANEAV QLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLT
Sbjct: 105 LADLSIGDWFGNLLYSAGQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLT 164
Query: 81 LGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLA 140
LGYIGAFGSGK R++++G+S+AFSLGLATTLA+LGV ASFAGKAYGQ+G GLP+AASGLA
Sbjct: 165 LGYIGAFGSGKDRSEVVGNSVAFSLGLATTLAILGVAASFAGKAYGQVGQGLPVAASGLA 224
Query: 141 IVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLL 200
++MGLNLLE+IELQLPSFF ++DPRAAAAN PSSVQAYLAGLTFALAASPCSTPVLATLL
Sbjct: 225 VIMGLNLLEVIELQLPSFFSDYDPRAAAANLPSSVQAYLAGLTFALAASPCSTPVLATLL 284
Query: 201 GYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLG 260
GYVATS+DP++GG+LLL+YTTGYVAPLL+AASFAGALQSLLSFR++S+WINP+SGA LLG
Sbjct: 285 GYVATSRDPIVGGSLLLTYTTGYVAPLLIAASFAGALQSLLSFRRYSAWINPISGAFLLG 344
Query: 261 GGLYTFLDRLFP-TTMAM 277
GG+YT LDRLFP T+M M
Sbjct: 345 GGVYTLLDRLFPATSMVM 362
>sp|Q2RAR6|CCDA1_ORYSJ Cytochrome c-type biogenesis ccda-like chloroplastic protein 1
OS=Oryza sativa subsp. japonica GN=CCDA1 PE=2 SV=1
Length = 367
Score = 429 bits (1102), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/258 (83%), Positives = 243/258 (94%), Gaps = 1/258 (0%)
Query: 21 MADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLT 80
+AD S+GD FG LYSAGQQANEAV QLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLT
Sbjct: 110 LADLSVGDWFGNLLYSAGQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLT 169
Query: 81 LGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLA 140
LGYIGAFGSGK R++++G+S+AFSLGLATTLA+LGV ASFAGKAYGQ+G GLP+AASGLA
Sbjct: 170 LGYIGAFGSGKDRSEVVGNSVAFSLGLATTLAILGVAASFAGKAYGQVGQGLPVAASGLA 229
Query: 141 IVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLL 200
++MGLNLLE+IELQLPSFF ++DPRAAAAN PSSVQAYLAGLTFALAASPCSTPVLATLL
Sbjct: 230 VIMGLNLLEVIELQLPSFFSDYDPRAAAANLPSSVQAYLAGLTFALAASPCSTPVLATLL 289
Query: 201 GYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLG 260
GYVATS+DP++GG+LLL+YTTGYVAPLL+AASFAGALQSLLSFR++S+WINP+SGA LLG
Sbjct: 290 GYVATSRDPIVGGSLLLTYTTGYVAPLLIAASFAGALQSLLSFRRYSAWINPISGAFLLG 349
Query: 261 GGLYTFLDRLFP-TTMAM 277
GG+YT LDRLFP T+M M
Sbjct: 350 GGVYTLLDRLFPATSMVM 367
>sp|Q9M5P3|CCDA_ARATH Cytochrome c-type biogenesis ccda-like chloroplastic protein
OS=Arabidopsis thaliana GN=CCDA PE=1 SV=1
Length = 354
Score = 406 bits (1043), Expect = e-112, Method: Compositional matrix adjust.
Identities = 229/266 (86%), Positives = 248/266 (93%), Gaps = 1/266 (0%)
Query: 13 EGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPC 72
+ A S+Y +A+GSLGD G FLYSA QQANEAV QLSALS TSLAVIFGAGLVTSLSPC
Sbjct: 89 DQATSIYILAEGSLGDSVGNFLYSANQQANEAVQDQLSALSVTSLAVIFGAGLVTSLSPC 148
Query: 73 TLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGL 132
TLSVLPLTLGYIGAFGSGKSR Q+IGD++AF+LGLATTLALLG+ ASFAGKAYGQIG GL
Sbjct: 149 TLSVLPLTLGYIGAFGSGKSRGQVIGDTVAFALGLATTLALLGIVASFAGKAYGQIGQGL 208
Query: 133 PLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCS 192
P+AASGLAIVMGLNLLEIIELQLPSFF+NFDPRAAAANFPSSVQAYLAGLTFALAASPCS
Sbjct: 209 PVAASGLAIVMGLNLLEIIELQLPSFFNNFDPRAAAANFPSSVQAYLAGLTFALAASPCS 268
Query: 193 TPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINP 252
TPVLATLLGYVATS+DP+IGG+LLL+YTTGYVAPL++AASFAGALQSLLS RK S+WINP
Sbjct: 269 TPVLATLLGYVATSRDPVIGGSLLLTYTTGYVAPLIVAASFAGALQSLLSLRKVSAWINP 328
Query: 253 MSGALLLGGGLYTFLDRLFP-TTMAM 277
+SGALLLGGGLYTFLDRLFP TM M
Sbjct: 329 ISGALLLGGGLYTFLDRLFPAATMVM 354
>sp|P51364|YCXN_PORPU Putative cytochrome c-type biogenesis protein dbsD-like OS=Porphyra
purpurea PE=3 SV=1
Length = 240
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 125/232 (53%), Gaps = 6/232 (2%)
Query: 34 LYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSR 93
LY++ N L QL+ ++ S + +F +GL TS SPC +S+LP+ + YI G S+
Sbjct: 7 LYNSQHLINNITLYQLNHINIASFSFVFFSGLFTSFSPCLISILPICIMYISGEGQKLSQ 66
Query: 94 AQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIEL 153
+ + F LG ++ LG+ A+ K Y Q+ G+P+ ++ + I MG +LL I+ L
Sbjct: 67 IDKLKNLFFFCLGAISSFTTLGLIATLLAKTYSQLFNGIPVISALVIIYMGFSLLNIVPL 126
Query: 154 QLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGG 213
+N + R N +++ YL+G+ LA S CSTP+ TLL +V ++ + IG
Sbjct: 127 ST----NNLNTRINNTN--QNIKMYLSGVGIGLAISSCSTPIFVTLLIWVTSNHNLFIGL 180
Query: 214 TLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYT 265
+L Y+ GY+ P+++ + F+ + S ++ P SG +LL G ++
Sbjct: 181 IFILIYSIGYIFPIIIGSLFSSRFLTTASSPFLNNLWAPFSGTILLSAGTFS 232
>sp|Q1XDC3|YCXN_PORYE Putative cytochrome c-type biogenesis protein dbsD-like OS=Porphyra
yezoensis PE=3 SV=1
Length = 224
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 109/208 (52%), Gaps = 6/208 (2%)
Query: 33 FLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKS 92
F+Y++ N L QL+ L+ TS + IF +GL TSLSPC +S+LP+ + YI +
Sbjct: 6 FVYNSQHFVNNITLYQLNHLNSTSFSFIFLSGLFTSLSPCIISILPVCILYIAGETQKLN 65
Query: 93 RAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIE 152
+ F LG ++ LG+ A+ K Y Q G+P ++ + I MGLNLL I+
Sbjct: 66 PINKTKNLFLFCLGTISSFITLGILATLITKTYSQFFNGIPTISAVVIIYMGLNLLNIVH 125
Query: 153 LQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIG 212
+ P F N + + YL+G+ +A S CSTP+ TLL ++ +++ G
Sbjct: 126 INSPKF------NGLVTNNNYNFKMYLSGVGIGIAISSCSTPIFVTLLVWINSTQKIFTG 179
Query: 213 GTLLLSYTTGYVAPLLLAASFAGALQSL 240
+L Y+ GY+ P+++ + F+ + L
Sbjct: 180 LIFILIYSIGYIFPIIIGSIFSTSFLKL 207
>sp|Q9JYM0|DSBD_NEIMB Thiol:disulfide interchange protein DsbD OS=Neisseria meningitidis
serogroup B (strain MC58) GN=dsbD PE=1 SV=1
Length = 601
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 123/273 (45%), Gaps = 24/273 (8%)
Query: 4 NSNYFPSSQEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFT-SLAVIFG 62
N Y P + E A++ S + G G + ++ +LS + +L F
Sbjct: 139 NGTYHPQTDEPASAKDRFLQPSSQNGSGALPPPKGDEGGDSRF-KLSWDTLNANLLAFFL 197
Query: 63 AGLVTSLSPCTLSVLPLTLG-YIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFA 121
AGL S + C +LP+ +G +GK+RA ++ S+ + GLA T L+G+ A
Sbjct: 198 AGLGLSFTACMYPLLPIVSSIVVGDKKAGKARAFVL--SVVYVQGLALTYTLVGIVAGLT 255
Query: 122 G---KAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLP----SFFDNFDPRAAAANFPSS 174
G + Q + LAAS L +V+ L++ + +QLP S+F N R +
Sbjct: 256 GALLTVWLQ-QAWVVLAASALMVVLALSMFGLFNIQLPNAVQSYFQNQSSRLSGGKI--- 311
Query: 175 VQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFA 234
V ++ G+ AL PC P LA LGY+ + D ++GG L + G PL+ +F
Sbjct: 312 VSVFIMGILSALIVGPCVAPPLAFALGYIGQTGDAVLGGLALYTLALGTGVPLIAIGTFG 371
Query: 235 GALQSLLSFRKFSSWINPMS---GALLLGGGLY 264
G + K W+N + G +LL +Y
Sbjct: 372 GHI-----LPKAGDWMNAVKYAFGFILLAVAVY 399
>sp|Q9JTL9|DSBD_NEIMA Thiol:disulfide interchange protein DsbD OS=Neisseria meningitidis
serogroup A / serotype 4A (strain Z2491) GN=dsbD PE=3
SV=2
Length = 601
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 125/276 (45%), Gaps = 24/276 (8%)
Query: 1 MSWNSNYFPSSQEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFT-SLAV 59
+S N Y P + E A++ S + G G + ++ +LS + +L
Sbjct: 136 ISGNGTYHPQTDEPASAKDRFLQPSSQNGSGALPPPKGDEGGDSRF-KLSWDTLNANLLA 194
Query: 60 IFGAGLVTSLSPCTLSVLPLTLG-YIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGA 118
F AGL S + C +LP+ +G +GK+RA ++ S+ + GL+ T L+G+ A
Sbjct: 195 FFLAGLGLSFTACMYPLLPIVSSIVVGDKKAGKARAFVL--SVVYVQGLSLTYTLVGIVA 252
Query: 119 SFAG---KAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLP----SFFDNFDPRAAAANF 171
G + Q + LAAS L +V+ L++ + +QLP S+F N R +
Sbjct: 253 GLTGALLTVWLQ-QAWVVLAASALMVVLALSMFGLFNIQLPNAVQSYFQNQSSRLSGGKI 311
Query: 172 PSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAA 231
V ++ G+ AL PC P LA LGY+ + D ++GG L + G PL+
Sbjct: 312 ---VSVFIMGILSALIVGPCVAPPLAFALGYIGQTGDAVLGGLALYTLALGTGVPLIAIG 368
Query: 232 SFAGALQSLLSFRKFSSWINPMS---GALLLGGGLY 264
+F G + + W+N + G +LL +Y
Sbjct: 369 TFGGHI-----LPRAGDWMNAVKYAFGFILLAVAVY 399
>sp|Q87KW0|DSBD_VIBPA Thiol:disulfide interchange protein DsbD OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=dsbD PE=3 SV=1
Length = 613
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 104/222 (46%), Gaps = 25/222 (11%)
Query: 62 GAGLVTSLSPCTLSVLPLTLGYIGAFGSGK-SRAQIIGDSIAFSLGLATTLALLGVGASF 120
G GL + +PC L + P+ + GSGK S+ + +G S+ + G+A T LLG+ +
Sbjct: 221 GVGL--AFTPCVLPMYPILTSIV--LGSGKLSQRRALGLSLVYVQGMALTYTLLGLVVAS 276
Query: 121 AGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPS----FFDNFDPRAAAANFPS 173
AG + Q P GL+I+ + L++ + LQLPS + +N + S
Sbjct: 277 AGMQF-QAAMQHPYVLIGLSILFVTLALSMFGVYTLQLPSSVQTWLNNLSNKQQGG---S 332
Query: 174 SVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASF 233
S + G L SPC+T L+ L YVA S D L GG L + G PL+L A F
Sbjct: 333 SAGVFAMGAISGLVCSPCTTAPLSGALLYVAQSGDLLTGGIALYALAMGMGIPLILVAVF 392
Query: 234 AGALQSLLSFRKFSSWINPMS---GALLLGGGLYTFLDRLFP 272
L K W++ + G +LL ++ L+R+ P
Sbjct: 393 GNKL-----LPKAGGWMDRVKTLFGFILLAAPIF-LLERILP 428
>sp|Q7MGV6|DSBD_VIBVY Thiol:disulfide interchange protein DsbD OS=Vibrio vulnificus
(strain YJ016) GN=dsbD PE=3 SV=1
Length = 598
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 104/222 (46%), Gaps = 25/222 (11%)
Query: 62 GAGLVTSLSPCTLSVLPLTLGYIGAFGSGK-SRAQIIGDSIAFSLGLATTLALLGVGASF 120
G GL + +PC L + P+ + GSGK S+ + +G S+ + G+A T LLG+ +
Sbjct: 204 GVGL--AFTPCVLPMYPILTSIV--LGSGKLSQRRALGLSLVYVQGMALTYTLLGLVVAS 259
Query: 121 AGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPS----FFDNFDPRAAAANFPS 173
AG + Q P GL+I+ + L++ + LQLPS + +N + S
Sbjct: 260 AGLQF-QAAMQHPYVLIGLSILFVTLALSMFGVYTLQLPSSVQTWLNNLSNKQQGG---S 315
Query: 174 SVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASF 233
S + G L SPC+T L+ L YVA S D L GG L + G PL+L A F
Sbjct: 316 STGVFAMGAISGLVCSPCTTAPLSGALLYVAQSGDLLTGGVALYALAMGMGIPLILVAVF 375
Query: 234 AGALQSLLSFRKFSSWINPMS---GALLLGGGLYTFLDRLFP 272
L K W++ + G +LL ++ L+R+ P
Sbjct: 376 GNKL-----LPKAGGWMDHVKTLFGFVLLAAPIF-LLERILP 411
>sp|P44202|Y1454_HAEIN Putative cytochrome c-type biogenesis protein HI_1454
OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd) GN=HI_1454 PE=3 SV=1
Length = 213
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 97/207 (46%), Gaps = 16/207 (7%)
Query: 57 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGV 116
+ +F AGL + LSPC ++P+ Y G G + ++ F LGL+ T LG
Sbjct: 8 IGTVFLAGLASFLSPCIFPIIPI---YFGILSKGGKKVL---NTFLFILGLSLTFVSLGF 61
Query: 117 GASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQ 176
F G T + A + I++G++ L I ++ L + + + + ++++
Sbjct: 62 SFGFLGNILFSNTT--RIIAGVIVIILGIHQLGIFKIGLLERTKLVEIKTSGKS--TALE 117
Query: 177 AYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGA 236
A++ GLTF+L +PC P+LA++L L G +++ Y G P +L + F+ +
Sbjct: 118 AFVLGLTFSLGWTPCIGPILASVLALSGDEGSALYGASMMFVYVLGLATPFVLFSFFSDS 177
Query: 237 LQSLLSFRKFSSWINPMSGALLLGGGL 263
L K + +N +GGG+
Sbjct: 178 L------LKRAKGLNKHLDKFKIGGGI 198
>sp|Q487R3|DSBD_COLP3 Thiol:disulfide interchange protein DsbD OS=Colwellia
psychrerythraea (strain 34H / ATCC BAA-681) GN=dsbD PE=3
SV=1
Length = 608
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 113/256 (44%), Gaps = 24/256 (9%)
Query: 36 SAGQQANEAVL-----GQLSALS-----FTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIG 85
A QQ NE + QLS + +L F GL+ S +PC + P+ G I
Sbjct: 166 DAAQQTNEGEVKKSEQHQLSDMLKQDSLLLTLIAFFVGGLLLSFTPCVFPMYPILTGIIV 225
Query: 86 AFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV--- 142
G G + + S + G+A T LLGV + AG + + P+ GL+I+
Sbjct: 226 GQGEGLTTKKAFTLSFFYVQGMAITYTLLGVVVAMAGAKFQAVFQH-PIVLIGLSILFIF 284
Query: 143 MGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYL-AGLTFALAASPCSTPVLATLLG 201
+ L++ + L LP+ + N + S+ L G+ L ASPC+T L L
Sbjct: 285 LALSMFGVFNLALPASWQNKLNNVSNKQKGGSITGVLMMGVISGLVASPCTTAPLTGALL 344
Query: 202 YVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMS---GALL 258
Y++ + D ++G + L + + G PLL+ S G L K +W+N + G LL
Sbjct: 345 YISQTGDVVLGASALYALSLGMGLPLLILGSSGGKL-----LPKAGAWMNIIKNIFGLLL 399
Query: 259 LGGGLYTFLDRLFPTT 274
L ++ L+R P
Sbjct: 400 LAVPVF-LLERFIPEV 414
>sp|Q8XV41|DSBD_RALSO Thiol:disulfide interchange protein DsbD OS=Ralstonia solanacearum
(strain GMI1000) GN=dsbD PE=3 SV=1
Length = 608
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 85/172 (49%), Gaps = 9/172 (5%)
Query: 71 PCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKA-YGQIG 129
PC L +LP+ + G +R + S+A+ LG+A +GV A AG+ +
Sbjct: 201 PCVLPMLPILSAIV--VGEHATRMRAAAVSVAYVLGMAVVYTAVGVAAGLAGQGLQAALQ 258
Query: 130 TGLPLAA-SGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQ---AYLAGLTFA 185
L A + L +V+ L + + ELQLP+ + + +A+ N S Q A + G A
Sbjct: 259 NAWVLGAFAALMVVLSLAMFGLYELQLPAAWRHRLTQAS--NRLSGGQVAGAAVMGALSA 316
Query: 186 LAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGAL 237
L SPC TP LA L Y+A + + ++GG L S + G PL+L AG L
Sbjct: 317 LIVSPCVTPALAGALAYIAQTGNAMVGGAALFSMSIGMGVPLVLVGVGAGNL 368
>sp|Q8DCZ0|DSBD_VIBVU Thiol:disulfide interchange protein DsbD OS=Vibrio vulnificus
(strain CMCP6) GN=dsbD PE=3 SV=1
Length = 593
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 104/222 (46%), Gaps = 25/222 (11%)
Query: 62 GAGLVTSLSPCTLSVLPLTLGYIGAFGSGK-SRAQIIGDSIAFSLGLATTLALLGVGASF 120
G GL + +PC L + P+ + GSGK S+ + +G S+ + G+A T LLG+ +
Sbjct: 199 GVGL--AFTPCVLPMYPILTSIV--LGSGKLSQRRALGLSLVYVQGMALTYTLLGLVVAS 254
Query: 121 AGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPS----FFDNFDPRAAAANFPS 173
AG + Q P GL+I+ + L++ + LQLPS + +N + S
Sbjct: 255 AGLQF-QAAMQHPYVLIGLSILFVTLALSMFGVYTLQLPSSVQTWLNNLSNKQQGG---S 310
Query: 174 SVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASF 233
S + G L SPC+T L+ L YVA S D L GG L + G PL+L A F
Sbjct: 311 SAGVFAMGAISGLVCSPCTTAPLSGALLYVAQSGDLLTGGVALYALAMGMGIPLILVAVF 370
Query: 234 AGALQSLLSFRKFSSWINPMS---GALLLGGGLYTFLDRLFP 272
L K W++ + G +LL ++ L+R+ P
Sbjct: 371 GNKL-----LPKAGGWMDRVKTLFGFVLLAAPIF-LLERILP 406
>sp|Q9KDL8|CCDA_BACHD Cytochrome c-type biogenesis protein CcdA OS=Bacillus halodurans
(strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153
/ C-125) GN=ccdA PE=3 SV=1
Length = 238
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 99/224 (44%), Gaps = 32/224 (14%)
Query: 61 FGAGLVTSLSPCTLSVLPLTLGYI-GAFGSGKS----RAQIIGDSIAFSLGLATTLALLG 115
F AG+V+ LSPC ++P+ L + G SG R I+ S+ F LG + LG
Sbjct: 10 FFAGVVSFLSPCVFPLVPVYLAQLTGTQISGNEITADRKLILMRSLGFILGFTSIFIFLG 69
Query: 116 VGASFAGKAYG-------QIGTGLPLAASGLAI-VMGLNLLEIIELQ--LPSFFDNFDPR 165
++F G+ + QIG G+ I V GL ++ +I ++ L PR
Sbjct: 70 ASSTFIGQLFWGNRQLFEQIG--------GIIITVFGLQMMGVISIRMLLSEKRLQAKPR 121
Query: 166 AAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVA 225
+A+ F +SV L G FA +PC VL +L + G ++L Y+ G
Sbjct: 122 QSAS-FANSV---LIGFLFATGWTPCIGLVLGAILVLAGDANTMWSGMSMLFVYSMGLAI 177
Query: 226 PLLLAASFAGALQSLLSFRKFSSW---INPMSGALLLGGGLYTF 266
P L A +SL RK + W I SG +++ G+ F
Sbjct: 178 PFFLVALLWS--RSLHKVRKLNKWLPTIQKGSGVVMVALGVLLF 219
>sp|P45706|CCDA_BACSU Cytochrome c-type biogenesis protein CcdA OS=Bacillus subtilis
(strain 168) GN=ccdA PE=3 SV=1
Length = 235
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 89/215 (41%), Gaps = 15/215 (6%)
Query: 61 FGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQI-------IGDSIAFSLGLATTLAL 113
FGAG ++ +SPC L + P L YI + + + ++ F LG +
Sbjct: 10 FGAGFLSFISPCCLPLYPAFLSYITGVSMDDVKTEKLLLQKRSLFHTLCFLLGFSVIFIA 69
Query: 114 LGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPS 173
LG G SF G + + + L I+ G L + + + + F
Sbjct: 70 LGYGTSFIGSLFRDYHDAIRQIGALLIILFGFITLGVFRPEAMMKERRIHFKHKPSGFLG 129
Query: 174 SVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASF 233
SV L G+ FA +PC+ P+LA ++ T+ + +L Y G+ P LL + F
Sbjct: 130 SV---LIGMAFAAGWTPCTGPILAAVITLAGTNPGSAVPYMML--YVLGFAVPFLLLSFF 184
Query: 234 AGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLD 268
L+ + RK +I G L++ G+ F +
Sbjct: 185 ITKLKWI---RKNQLFIMKAGGVLMIVIGVLLFFN 216
>sp|Q5QVU3|DSBD_IDILO Thiol:disulfide interchange protein DsbD OS=Idiomarina loihiensis
(strain ATCC BAA-735 / DSM 15497 / L2-TR) GN=dsbD PE=3
SV=1
Length = 568
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 107/232 (46%), Gaps = 21/232 (9%)
Query: 56 SLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLG 115
+L + F G+ + +PC + P+ G + ++ + S + G+A T +LLG
Sbjct: 174 TLLLFFALGIGLAFTPCVFPMYPILSGVVLG-NRERNWKNTLWLSFIYVQGMAITYSLLG 232
Query: 116 VGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEII---ELQLP----SFFDNFDPRAAA 168
+ + AG Y Q P+ LA++ L L + LQLP S +F + +
Sbjct: 233 LVVASAGMQY-QAYFQHPVVLIVLAVLFALFALSMFGAYTLQLPISWQSKLQSFSGQQSG 291
Query: 169 ANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLL 228
N V ++ G L ASPC+T L+ L ++A S D + G +L + + G PL+
Sbjct: 292 GNI---VGVFIIGAISGLVASPCTTAPLSGALLFIAQSGDMVSGVAILYALSLGMGVPLI 348
Query: 229 LAASFAGALQSLLSFRKFSSWINPMS---GALLLGGGLYTFLDRLFPTTMAM 277
L G L K +W+N + G LLL L+ ++RL PT+++M
Sbjct: 349 LFGLSGGKL-----LPKAGAWMNVVKQFFGWLLLAVTLF-LIERLIPTSISM 394
>sp|A1JIN7|DSBD_YERE8 Thiol:disulfide interchange protein DsbD OS=Yersinia enterocolitica
serotype O:8 / biotype 1B (strain 8081) GN=dsbD PE=3
SV=1
Length = 578
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 91/191 (47%), Gaps = 8/191 (4%)
Query: 52 LSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATT 110
L F+ L A++ G G+ + +PC L + PL I S+ +I+ +I + G+A T
Sbjct: 176 LPFSPLWALLIGIGI--AFTPCVLPMYPLISAIILGREKPHSQRRILLLAIVYVQGMALT 233
Query: 111 LALLGVGASFAGKAYGQIGTGLPLAASGLA---IVMGLNLLEIIELQLPSFFDNFDPRAA 167
LLG+ + AG + Q P GL+ +++ L++ + LQLPS + +
Sbjct: 234 YTLLGLVVAAAGLQF-QAALQHPYVLIGLSALFVLLALSMFGLYSLQLPSSLQTRLVQWS 292
Query: 168 AANFPSSVQAYLA-GLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAP 226
++ S+ A G L SPC+T L+ +L Y+A S + L GG L Y G P
Sbjct: 293 SSQRGGSLAGVFAMGALAGLICSPCTTAPLSAILLYIAQSGNMLAGGGTLYLYALGMGIP 352
Query: 227 LLLAASFAGAL 237
L++ F L
Sbjct: 353 LVIVTLFGNKL 363
>sp|A5UI29|DSBD_HAEIG Thiol:disulfide interchange protein DsbD OS=Haemophilus influenzae
(strain PittGG) GN=dsbD PE=3 SV=1
Length = 579
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 97/230 (42%), Gaps = 32/230 (13%)
Query: 40 QANEAVLGQLSALS---FTSLAVIFG---AGLVTSLSPCTLSVLPLTLGYIGAFGSGKSR 93
+ N A+L + L+ F S IFG GL + +PC L +LPL + G +
Sbjct: 155 EKNTALLSEQDRLADGLFHSKWAIFGFFVLGLGLAFTPCVLPMLPLLSAIV--IGQQQRP 212
Query: 94 AQIIGDSIAF--SLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAI---VMGLNLL 148
+ S+AF G+A T LLG+ + G + QI P GL+I V+ L++
Sbjct: 213 NMMRAFSLAFLYVQGMALTYTLLGLAVAAIGLPF-QIALQHPYVMIGLSILFVVLALSMF 271
Query: 149 EIIELQLPSFFDNFDPRAAAANFPSSVQ-------AYLAGLTFALAASPCSTPVLATLLG 201
+ +QLP+ N N S Q A+ G+ L ASPC++ L+ L
Sbjct: 272 GLFTIQLPNSLQN------KLNTWSQKQTSGAFGGAFAMGMIAGLVASPCTSAPLSGALL 325
Query: 202 YVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWIN 251
YVA S D G L G PL+L F + K W+N
Sbjct: 326 YVAQSGDLFTGAVTLYLLALGMGVPLMLITLFGNKI-----LPKSGEWMN 370
>sp|Q66FE1|DSBD_YERPS Thiol:disulfide interchange protein DsbD OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=dsbD
PE=3 SV=1
Length = 595
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 8/193 (4%)
Query: 50 SALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLA 108
S L F+ L A++ G G+ + +PC L + PL I S+ +I+ ++ + G+A
Sbjct: 188 STLPFSPLWALLIGIGI--AFTPCVLPMYPLISAVILGREKPHSQRRILILAVVYVQGMA 245
Query: 109 TTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDNFDPR 165
T LLG+ + AG + Q P GL+++ + L++ + LQLPS +
Sbjct: 246 LTYTLLGLVVAAAGLQF-QAALQHPYVLIGLSVLFVLLALSMFGLYSLQLPSSLQTRLTQ 304
Query: 166 AAAANFPSSVQAYLA-GLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYV 224
+ + S+ A G L SPC+T L+ +L Y+A S + L GG L Y G
Sbjct: 305 WSNSQRGGSLAGVFAMGALAGLICSPCTTAPLSAILLYIAQSGNMLAGGGTLYLYALGMG 364
Query: 225 APLLLAASFAGAL 237
PL++ F L
Sbjct: 365 IPLVVVTLFGNKL 377
>sp|A4TRR6|DSBD_YERPP Thiol:disulfide interchange protein DsbD OS=Yersinia pestis (strain
Pestoides F) GN=dsbD PE=3 SV=1
Length = 595
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 8/193 (4%)
Query: 50 SALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLA 108
S L F+ L A++ G G+ + +PC L + PL I S+ +I+ ++ + G+A
Sbjct: 188 STLPFSPLWALLIGIGI--AFTPCVLPMYPLISAVILGREKPHSQRRILILAVVYVQGMA 245
Query: 109 TTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDNFDPR 165
T LLG+ + AG + Q P GL+++ + L++ + LQLPS +
Sbjct: 246 LTYTLLGLVVAAAGLQF-QAALQHPYVLIGLSVLFVLLALSMFGLYSLQLPSSLQTRLTQ 304
Query: 166 AAAANFPSSVQAYLA-GLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYV 224
+ + S+ A G L SPC+T L+ +L Y+A S + L GG L Y G
Sbjct: 305 WSNSQRGGSLAGVFAMGALAGLICSPCTTAPLSAILLYIAQSGNMLAGGGTLYLYALGMG 364
Query: 225 APLLLAASFAGAL 237
PL++ F L
Sbjct: 365 IPLVVVTLFGNKL 377
>sp|Q1CEC8|DSBD_YERPN Thiol:disulfide interchange protein DsbD OS=Yersinia pestis bv.
Antiqua (strain Nepal516) GN=dsbD PE=3 SV=1
Length = 595
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 8/193 (4%)
Query: 50 SALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLA 108
S L F+ L A++ G G+ + +PC L + PL I S+ +I+ ++ + G+A
Sbjct: 188 STLPFSPLWALLIGIGI--AFTPCVLPMYPLISAVILGREKPHSQRRILILAVVYVQGMA 245
Query: 109 TTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDNFDPR 165
T LLG+ + AG + Q P GL+++ + L++ + LQLPS +
Sbjct: 246 LTYTLLGLVVAAAGLQF-QAALQHPYVLIGLSVLFVLLALSMFGLYSLQLPSSLQTRLTQ 304
Query: 166 AAAANFPSSVQAYLA-GLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYV 224
+ + S+ A G L SPC+T L+ +L Y+A S + L GG L Y G
Sbjct: 305 WSNSQRGGSLAGVFAMGALAGLICSPCTTAPLSAILLYIAQSGNMLAGGGTLYLYALGMG 364
Query: 225 APLLLAASFAGAL 237
PL++ F L
Sbjct: 365 IPLVVVTLFGNKL 377
>sp|Q8ZIY9|DSBD_YERPE Thiol:disulfide interchange protein DsbD OS=Yersinia pestis GN=dsbD
PE=3 SV=1
Length = 595
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 8/193 (4%)
Query: 50 SALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLA 108
S L F+ L A++ G G+ + +PC L + PL I S+ +I+ ++ + G+A
Sbjct: 188 STLPFSPLWALLIGIGI--AFTPCVLPMYPLISAVILGREKPHSQRRILILAVVYVQGMA 245
Query: 109 TTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDNFDPR 165
T LLG+ + AG + Q P GL+++ + L++ + LQLPS +
Sbjct: 246 LTYTLLGLVVAAAGLQF-QAALQHPYVLIGLSVLFVLLALSMFGLYSLQLPSSLQTRLTQ 304
Query: 166 AAAANFPSSVQAYLA-GLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYV 224
+ + S+ A G L SPC+T L+ +L Y+A S + L GG L Y G
Sbjct: 305 WSNSQRGGSLAGVFAMGALAGLICSPCTTAPLSAILLYIAQSGNMLAGGGTLYLYALGMG 364
Query: 225 APLLLAASFAGAL 237
PL++ F L
Sbjct: 365 IPLVVVTLFGNKL 377
>sp|Q1C0X4|DSBD_YERPA Thiol:disulfide interchange protein DsbD OS=Yersinia pestis bv.
Antiqua (strain Antiqua) GN=dsbD PE=3 SV=1
Length = 595
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 8/193 (4%)
Query: 50 SALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLA 108
S L F+ L A++ G G+ + +PC L + PL I S+ +I+ ++ + G+A
Sbjct: 188 STLPFSPLWALLIGIGI--AFTPCVLPMYPLISAVILGREKPHSQRRILILAVVYVQGMA 245
Query: 109 TTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDNFDPR 165
T LLG+ + AG + Q P GL+++ + L++ + LQLPS +
Sbjct: 246 LTYTLLGLVVAAAGLQF-QAALQHPYVLIGLSVLFVLLALSMFGLYSLQLPSSLQTRLTQ 304
Query: 166 AAAANFPSSVQAYLA-GLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYV 224
+ + S+ A G L SPC+T L+ +L Y+A S + L GG L Y G
Sbjct: 305 WSNSQRGGSLAGVFAMGALAGLICSPCTTAPLSAILLYIAQSGNMLAGGGTLYLYALGMG 364
Query: 225 APLLLAASFAGAL 237
PL++ F L
Sbjct: 365 IPLVVVTLFGNKL 377
>sp|Q7MZX2|DSBD_PHOLL Thiol:disulfide interchange protein DsbD OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=dsbD PE=3
SV=1
Length = 575
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 18/205 (8%)
Query: 43 EAVLGQLSALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSI 101
E+ L F+ L A++ G G+ + +PC L + PL I KS QI ++
Sbjct: 164 ESASNDQQHLPFSPLWAILIGIGI--AFTPCVLPMYPLISSIILGSQRPKSLKQIFWLAL 221
Query: 102 AFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLA---IVMGLNLLEIIELQLPSF 158
++ G+A T LLG+ + AG + Q P GL+ I++ L++ + LQLPS
Sbjct: 222 SYVQGMAVTYTLLGLIVAAAGLQF-QAALQHPYVLIGLSVLFILLALSMFGLYSLQLPSA 280
Query: 159 FDNFDPRAAAANFPSSVQ------AYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIG 212
+ N+ + + + G L SPC+T L+ +L Y+A S + + G
Sbjct: 281 V-----QTRLVNWSNQQKNGSLFGVFAMGALAGLICSPCTTAPLSAILLYIAQSGNTVAG 335
Query: 213 GTLLLSYTTGYVAPLLLAASFAGAL 237
G L Y G PL+ F L
Sbjct: 336 GLTLYLYALGMGLPLIAVTLFGHKL 360
>sp|Q15ZS2|DSBD_PSEA6 Thiol:disulfide interchange protein DsbD OS=Pseudoalteromonas
atlantica (strain T6c / ATCC BAA-1087) GN=dsbD PE=3 SV=1
Length = 592
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 102/220 (46%), Gaps = 24/220 (10%)
Query: 62 GAGLVTSLSPCTLSVLPLTLGYIGAFGSGKS----RAQIIGDSIAFSLGLATTLALLGVG 117
G GL + +PC + P+ G + G GKS RA ++ S + G+A T +LLG+
Sbjct: 196 GVGL--AFTPCVFPMYPILSGIV--IGQGKSISTSRAFVL--SFVYVQGMALTYSLLGLV 249
Query: 118 ASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEII---ELQLPS-FFDNFDPRAAAANFPS 173
+ AG + Q P+ L +V L L + E QLPS + + + + S
Sbjct: 250 VASAGVQF-QAALQHPIILGALIVVFALLALVMFGAWEFQLPSSWQEKLNGVSNQQKSGS 308
Query: 174 SVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASF 233
+ L G L ASPC+T L +L Y+A + D L+G + L + + G PL+L
Sbjct: 309 YLGVLLMGAISGLVASPCTTAPLTGILLYIAQTSDLLLGFSALYALSLGMGIPLILFGIT 368
Query: 234 AGALQSLLSFRKFSSWINPMS---GALLLGGGLYTFLDRL 270
G L K +W+N + G ++L L F++RL
Sbjct: 369 GGKL-----LPKAGAWMNIIKVTFGFMMLAVAL-MFVERL 402
>sp|P44919|DSBD_HAEIN Thiol:disulfide interchange protein DsbD OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dsbD PE=3
SV=1
Length = 579
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 97/230 (42%), Gaps = 32/230 (13%)
Query: 40 QANEAVLGQLSALS---FTSLAVIFG---AGLVTSLSPCTLSVLPLTLGYIGAFGSGKSR 93
+ N A+L + L+ F S IFG GL + +PC L +LPL + G +
Sbjct: 155 EKNTALLSEQDRLADGLFHSKWAIFGFFVLGLGLAFTPCVLPMLPLLSAIV--IGQQQRP 212
Query: 94 AQIIGDSIAF--SLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLL 148
+ S+AF G+A T LLG+ + G + QI P GL+I+ + L++
Sbjct: 213 NMMRAFSLAFLYVQGMALTYTLLGLAVAAIGLPF-QIALQHPYVMIGLSILFVALALSMF 271
Query: 149 EIIELQLPSFFDNFDPRAAAANFPSSVQ-------AYLAGLTFALAASPCSTPVLATLLG 201
+ +QLP+ N N S Q A+ G+ L ASPC++ L+ L
Sbjct: 272 GLFTIQLPNSLQN------KLNTWSQKQTSGAFGGAFAMGMIAGLVASPCTSAPLSGALL 325
Query: 202 YVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWIN 251
YVA S D G L G PL+L F + K W+N
Sbjct: 326 YVAQSGDLFTGAVTLYLLALGMGVPLMLITLFGNKI-----LPKSGEWMN 370
>sp|Q9KNN1|DSBD_VIBCH Thiol:disulfide interchange protein DsbD OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=dsbD PE=3 SV=1
Length = 600
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 111/241 (46%), Gaps = 20/241 (8%)
Query: 41 ANEAVLGQLSALSFTSLAVI-FGAGLVTSLSPCTLSVLP-LTLGYIGAFGSGKSRAQIIG 98
A +++ +L+ +T L + G GL + +PC L + P LT +G + RA ++
Sbjct: 184 AQDSLANKLAQNWWTPLLFLALGVGL--AFTPCVLPMYPILTSIVLGGAQLTQRRALLL- 240
Query: 99 DSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQL 155
S+ + G+A T LLG+ + AG + Q P GL+++ + L++ + LQL
Sbjct: 241 -SVIYVQGMALTYTLLGLVVASAGLQF-QAALQHPYVLMGLSVLFVALALSMFGLYSLQL 298
Query: 156 PSFFDNFDPRAAAANFPSSVQAYLA-GLTFALAASPCSTPVLATLLGYVATSKDPLIGGT 214
PS + + A S+ A G L SPC+T L+ L YVA S D L G
Sbjct: 299 PSGVQTWLNSLSNAQQGGSLPGVFAMGAISGLVCSPCTTAPLSGALLYVAQSGDLLTGAV 358
Query: 215 LLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMS---GALLLGGGLYTFLDRLF 271
L + G PL+L A F L K +W+ + G +LL ++ L+R+
Sbjct: 359 ALYALAIGMGIPLILVAVFGNKL-----LPKAGNWMERVKTLFGFVLLAAPIF-LLERIV 412
Query: 272 P 272
P
Sbjct: 413 P 413
>sp|Q3YUK4|DSBD_SHISS Thiol:disulfide interchange protein DsbD OS=Shigella sonnei (strain
Ss046) GN=dsbD PE=3 SV=1
Length = 565
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 91/196 (46%), Gaps = 14/196 (7%)
Query: 50 SALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLA 108
+ L F++L A++ G G+ + +PC L + PL G + S A+ + + + G+A
Sbjct: 161 AQLPFSALWALLIGIGI--AFTPCVLPMYPLISGIVLGGKQRLSTARALLLTFIYVQGMA 218
Query: 109 TTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDNF--- 162
T LG+ + AG + Q P GLAIV + +++ + LQLPS
Sbjct: 219 LTYTALGLVVAAAGLQF-QAALQHPYVLIGLAIVFTLLAMSMFGLFTLQLPSSLQTHLTL 277
Query: 163 -DPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTT 221
R + P V ++ G L SPC+T L+ +L Y+A S + +GG +L Y
Sbjct: 278 MSNRQQGGS-PGGV--FVMGAIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGMLYLYAL 334
Query: 222 GYVAPLLLAASFAGAL 237
G PL+L F L
Sbjct: 335 GMGLPLMLITVFGNRL 350
>sp|Q2NW99|DSBD_SODGM Thiol:disulfide interchange protein DsbD OS=Sodalis glossinidius
(strain morsitans) GN=dsbD PE=3 SV=1
Length = 590
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 91/197 (46%), Gaps = 12/197 (6%)
Query: 48 QLSALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLG 106
Q + L F+ L A++ G G+ + +PC L + PL I S A+++ ++ + +G
Sbjct: 182 QSNNLPFSPLWALLIGIGI--AFTPCVLPMYPLISAVILGNRLQLSTARVLLLAVVYVMG 239
Query: 107 LATTLALLGVGASFAGKAYGQI--GTGLPLAASGLAIVMGLNLLEIIELQLPSFFDN--- 161
+A T LLGV + AG + + L + + L I++ L++ + LQLPS
Sbjct: 240 MAITYTLLGVAVAAAGLQFQAVLQQPALLIGLAALFILLALSMFGVFTLQLPSALQTHLA 299
Query: 162 -FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYT 220
+ R P ++ G L SPC+T L+ +L Y+A S + G L Y
Sbjct: 300 LWSNRQRQGTLPG---VFIMGALAGLFCSPCTTAPLSAILLYIAQSGNLWFSGFTLWLYA 356
Query: 221 TGYVAPLLLAASFAGAL 237
G PL+L A F L
Sbjct: 357 VGMGIPLILVALFGHRL 373
>sp|Q1R3C4|DSBD_ECOUT Thiol:disulfide interchange protein DsbD OS=Escherichia coli
(strain UTI89 / UPEC) GN=dsbD PE=3 SV=1
Length = 565
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 14/196 (7%)
Query: 50 SALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLA 108
+ L F++L A++ G G+ + +PC L + PL G + S A+ + + + G+A
Sbjct: 161 AQLPFSALWALLIGIGI--AFTPCVLPMYPLISGIVLGGKQRLSTARALLLTFIYVQGMA 218
Query: 109 TTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDN---- 161
T LG+ + AG + Q P GLAIV + +++ + LQLPS
Sbjct: 219 LTYTALGLVVAAAGLQF-QAALQHPYVLIGLAIVFTLLAMSMFGLFTLQLPSSLQTRLTL 277
Query: 162 FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTT 221
R + P V ++ G L SPC+T L+ +L Y+A S + +GG L Y
Sbjct: 278 MSNRQQGGS-PGGV--FIMGAIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGTLYLYAL 334
Query: 222 GYVAPLLLAASFAGAL 237
G PL+L F L
Sbjct: 335 GMGLPLMLITVFGNRL 350
>sp|Q8CVH5|DSBD_ECOL6 Thiol:disulfide interchange protein DsbD OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=dsbD PE=3 SV=1
Length = 565
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 14/196 (7%)
Query: 50 SALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLA 108
+ L F++L A++ G G+ + +PC L + PL G + S A+ + + + G+A
Sbjct: 161 AQLPFSALWALLIGIGI--AFTPCVLPMYPLISGIVLGGKQRLSTARALLLTFIYVQGMA 218
Query: 109 TTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDN---- 161
T LG+ + AG + Q P GLAIV + +++ + LQLPS
Sbjct: 219 LTYTALGLVVAAAGLQF-QAALQHPYVLIGLAIVFTLLAMSMFGLFTLQLPSSLQTRLTL 277
Query: 162 FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTT 221
R + P V ++ G L SPC+T L+ +L Y+A S + +GG L Y
Sbjct: 278 MSNRQQGGS-PGGV--FIMGAIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGTLYLYAL 334
Query: 222 GYVAPLLLAASFAGAL 237
G PL+L F L
Sbjct: 335 GMGLPLMLITVFGNRL 350
>sp|Q0T9Q5|DSBD_ECOL5 Thiol:disulfide interchange protein DsbD OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=dsbD PE=3 SV=1
Length = 565
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 14/196 (7%)
Query: 50 SALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLA 108
+ L F++L A++ G G+ + +PC L + PL G + S A+ + + + G+A
Sbjct: 161 AQLPFSALWALLIGIGI--AFTPCVLPMYPLISGIVLGGKQRLSTARALLLTFIYVQGMA 218
Query: 109 TTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDN---- 161
T LG+ + AG + Q P GLAIV + +++ + LQLPS
Sbjct: 219 LTYTALGLVVAAAGLQF-QAALQHPYVLIGLAIVFTLLAMSMFGLFTLQLPSSLQTRLTL 277
Query: 162 FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTT 221
R + P V ++ G L SPC+T L+ +L Y+A S + +GG L Y
Sbjct: 278 MSNRQQGGS-PGGV--FIMGAIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGTLYLYAL 334
Query: 222 GYVAPLLLAASFAGAL 237
G PL+L F L
Sbjct: 335 GMGLPLMLITVFGNRL 350
>sp|Q31T72|DSBD_SHIBS Thiol:disulfide interchange protein DsbD OS=Shigella boydii
serotype 4 (strain Sb227) GN=dsbD PE=3 SV=1
Length = 565
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 93/210 (44%), Gaps = 19/210 (9%)
Query: 36 SAGQQANEAVLGQLSALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRA 94
S QQ + L F++L A++ G G+ + +PC L + PL G + S A
Sbjct: 152 SVSQQEQHT-----AQLPFSALWALLIGIGI--AFTPCVLPMYPLISGIVLGGKQRLSTA 204
Query: 95 QIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEII 151
+ + + + G+A T LG+ + AG + Q P GLAIV + +++ +
Sbjct: 205 RALLLTFIYVQGMALTYTALGLVVAAAGLQF-QAALQHPYVLIGLAIVFTLLAMSMFGLF 263
Query: 152 ELQLPSFFDN----FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSK 207
LQLPS R + P V ++ G L SPC+T L+ +L Y+A S
Sbjct: 264 TLQLPSSLQTRLTLMSNRQQGGS-PGGV--FVMGAIAGLICSPCTTAPLSAILLYIAQSG 320
Query: 208 DPLIGGTLLLSYTTGYVAPLLLAASFAGAL 237
+ +GG L Y G PL+L F L
Sbjct: 321 NMWLGGGTLYLYALGMGLPLMLITVFGNRL 350
>sp|Q0SXE3|DSBD_SHIF8 Thiol:disulfide interchange protein DsbD OS=Shigella flexneri
serotype 5b (strain 8401) GN=dsbD PE=3 SV=1
Length = 565
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 93/210 (44%), Gaps = 19/210 (9%)
Query: 36 SAGQQANEAVLGQLSALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRA 94
S QQ + L F++L A++ G G+ + +PC L + PL G + S A
Sbjct: 152 SVSQQEQHT-----AQLPFSALWALLIGIGI--AFTPCVLPMYPLISGIVLGGKQRLSTA 204
Query: 95 QIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEII 151
+ + + + G+A T LG+ + AG + Q P GLAIV + +++ +
Sbjct: 205 RALLLTFIYVQGMALTYTALGLVVAAAGLQF-QAALQHPYVLIGLAIVFTLLAMSMFGLF 263
Query: 152 ELQLPSFFDN----FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSK 207
LQLPS R + P V ++ G L SPC+T L+ +L Y+A S
Sbjct: 264 TLQLPSSLQTRLTLMSNRQQGGS-PGGV--FVMGAIAGLICSPCTTAPLSAILLYIAQSG 320
Query: 208 DPLIGGTLLLSYTTGYVAPLLLAASFAGAL 237
+ +GG L Y G PL+L F L
Sbjct: 321 NMWLGGGTLYLYALGMGLPLMLITVFGNRL 350
>sp|P36655|DSBD_ECOLI Thiol:disulfide interchange protein DsbD OS=Escherichia coli
(strain K12) GN=dsbD PE=1 SV=4
Length = 565
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 14/196 (7%)
Query: 50 SALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLA 108
+ L F++L A++ G G+ + +PC L + PL G + S A+ + + + G+A
Sbjct: 161 AQLPFSALWALLIGIGI--AFTPCVLPMYPLISGIVLGGKQRLSTARALLLTFIYVQGMA 218
Query: 109 TTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDN---- 161
T LG+ + AG + Q P GLAIV + +++ + LQLPS
Sbjct: 219 LTYTALGLVVAAAGLQF-QAALQHPYVLIGLAIVFTLLAMSMFGLFTLQLPSSLQTRLTL 277
Query: 162 FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTT 221
R + P V ++ G L SPC+T L+ +L Y+A S + +GG L Y
Sbjct: 278 MSNRQQGGS-PGGV--FVMGAIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGTLYLYAL 334
Query: 222 GYVAPLLLAASFAGAL 237
G PL+L F L
Sbjct: 335 GMGLPLMLITVFGNRL 350
>sp|Q328D2|DSBD_SHIDS Thiol:disulfide interchange protein DsbD OS=Shigella dysenteriae
serotype 1 (strain Sd197) GN=dsbD PE=3 SV=1
Length = 565
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 14/196 (7%)
Query: 50 SALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLA 108
+ L F++L A++ G G+ + +PC L + PL G + S A+ + + + G+A
Sbjct: 161 AQLPFSALWALLIGIGI--AFTPCVLPMYPLISGIVLGGKQRLSTARALLLTFIYVQGMA 218
Query: 109 TTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDN---- 161
T LG+ + AG + Q P GLAIV + +++ + LQLPS
Sbjct: 219 LTYTALGLVVAAAGLQF-QAALQHPYVLIGLAIVFTLLAMSMFGLFTLQLPSSLQTRLTL 277
Query: 162 FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTT 221
R + P V ++ G L SPC+T L+ +L Y+A S + +GG L Y
Sbjct: 278 MSNRQQGGS-PGGV--FVMGAIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGTLYLYAL 334
Query: 222 GYVAPLLLAASFAGAL 237
G PL+L F L
Sbjct: 335 GMGLPLMLITVFGNRL 350
>sp|P58162|DSBD_ECO57 Thiol:disulfide interchange protein DsbD OS=Escherichia coli
O157:H7 GN=dsbD PE=1 SV=1
Length = 565
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 14/196 (7%)
Query: 50 SALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLA 108
+ L F++L A++ G G+ + +PC L + PL G + S A+ + + + G+A
Sbjct: 161 AQLPFSALWALLIGIGI--AFTPCVLPMYPLISGIVLGGKQRLSTARALLLTFIYVQGMA 218
Query: 109 TTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDN---- 161
T LG+ + AG + Q P GL IV + +++ ++ LQLPS
Sbjct: 219 LTYTALGLVVAAAGLQF-QAALQHPYVLIGLTIVFTLLAMSMFGLLTLQLPSSLQTRLTL 277
Query: 162 FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTT 221
R + P V ++ G L SPC+T L+ +L Y+A S + +GG L Y
Sbjct: 278 MSNRQQGGS-PGGV--FIMGTIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGTLYLYAL 334
Query: 222 GYVAPLLLAASFAGAL 237
G PL+L F L
Sbjct: 335 GMGLPLMLITVFGNRL 350
>sp|Q9CP40|DSBD_PASMU Thiol:disulfide interchange protein DsbD OS=Pasteurella multocida
(strain Pm70) GN=dsbD PE=3 SV=1
Length = 576
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 13/181 (7%)
Query: 60 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGAS 119
+FG GL + +PC L +LPL + S A+ G S+ + G+A T LLG+ +
Sbjct: 183 LFGLGL--AFTPCVLPMLPLLSAIVIGREQRPSTAKAFGLSVVYVQGMALTYTLLGLIVA 240
Query: 120 FAGKAYGQIGTGLP---LAASGLAIVMGLNLLEIIELQLP----SFFDNFDPRAAAANFP 172
G + Q+ P L S + +++ L++ + LQLP + + + + F
Sbjct: 241 AIGLPF-QVALQSPYVLLTLSAIFVLLALSMFGLFTLQLPVSLQTKLTQYSQQQKSGVFG 299
Query: 173 SSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAAS 232
++ G+ L ASPC++ L+ L YVA S D G L G PL+
Sbjct: 300 G---VFVMGMIAGLVASPCTSAPLSGALLYVAQSGDLFTGAITLYLLALGMGLPLIFITV 356
Query: 233 F 233
F
Sbjct: 357 F 357
>sp|Q9XDB2|DSBD_PANCI Thiol:disulfide interchange protein DsbD OS=Pantoea citrea GN=dsbD
PE=3 SV=1
Length = 578
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 14/197 (7%)
Query: 49 LSALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGL 107
+S L F+ L A++ G G+ + +PC L + PL I ++I+ + + G+
Sbjct: 171 VSRLPFSPLWALLIGIGI--AFTPCVLPMYPLISAIILGGRRDVRASRILLLAFVYVQGM 228
Query: 108 ATTLALLGVGASFAGKAYGQIGTGLP---LAASGLAIVMGLNLLEIIELQLPSFFDN--- 161
T L+G+ + AG + Q P L+ S + I++ L++ + LQLPS
Sbjct: 229 GLTYTLMGIVVAAAGLRF-QAALQSPVILLSLSAVFILLALSMFGLFSLQLPSSLQTRLT 287
Query: 162 -FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYT 220
+ R + +L G L SPC+T L+ +L Y+A S + L GG L Y
Sbjct: 288 LWSNRQQGGSLSG---VFLMGALAGLICSPCTTAPLSAILLYIAQSGNMLAGGGTLYLYA 344
Query: 221 TGYVAPLLLAASFAGAL 237
G PL++ F L
Sbjct: 345 LGMGLPLIIVTLFGNKL 361
>sp|A5UDI9|DSBD_HAEIE Thiol:disulfide interchange protein DsbD OS=Haemophilus influenzae
(strain PittEE) GN=dsbD PE=3 SV=1
Length = 579
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 82/196 (41%), Gaps = 26/196 (13%)
Query: 68 SLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAF--SLGLATTLALLGVGASFAGKAY 125
+ +PC L +LPL + G + + S+AF G+A T LLG+ + G +
Sbjct: 189 AFTPCVLPMLPLLSAIV--IGQQQRPNMMRAFSLAFLYVQGMALTYTLLGLAVAAIGLPF 246
Query: 126 GQIGTGLPLAASGLAI---VMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQ------ 176
QI P GL+I V+ L++ + +QLP+ N N S Q
Sbjct: 247 -QIALQHPYVMIGLSILFVVLALSMFGLFTIQLPNSLQN------KLNTWSQKQTSGAFG 299
Query: 177 -AYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAG 235
A+ G+ L ASPC++ L+ L YVA S D G L G PL+L F
Sbjct: 300 GAFAMGMIAGLVASPCTSAPLSGALLYVAQSGDLFTGAATLYLLALGMGVPLMLITLFGN 359
Query: 236 ALQSLLSFRKFSSWIN 251
+ K W+N
Sbjct: 360 KI-----LPKSGEWMN 370
>sp|Q8ZKC3|DSBD_SALTY Thiol:disulfide interchange protein DsbD OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=dsbD PE=3 SV=1
Length = 567
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 14/196 (7%)
Query: 50 SALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLA 108
+ L F++L A++ G G+ + +PC L + PL G + S + + + + G+A
Sbjct: 164 AQLPFSALWALLIGIGI--AFTPCVLPMYPLISGIVLGGRQRLSTGRALLLAFIYVQGMA 221
Query: 109 TTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDN---- 161
T LG+ + AG + Q P GLAIV + L++ + LQLPS
Sbjct: 222 LTYTALGLVVAAAGLQF-QAALQHPYVLIGLAIVFTLLALSMFGLFTLQLPSSLQTRLTL 280
Query: 162 FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTT 221
R + P V ++ G L SPC+T L+ +L Y+A S + +GG L Y
Sbjct: 281 MSNRQQGGS-PGGV--FVMGAIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGTLYLYAL 337
Query: 222 GYVAPLLLAASFAGAL 237
G PL+L F L
Sbjct: 338 GMGLPLMLVTVFGNRL 353
>sp|Q5PIQ0|DSBD_SALPA Thiol:disulfide interchange protein DsbD OS=Salmonella paratyphi A
(strain ATCC 9150 / SARB42) GN=dsbD PE=3 SV=1
Length = 567
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 14/196 (7%)
Query: 50 SALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLA 108
+ L F++L A++ G G+ + +PC L + PL G + S + + + + G+A
Sbjct: 164 AQLPFSALWALLIGIGI--AFTPCVLPMYPLISGIVLGGRQRLSTGRALLLAFIYVQGMA 221
Query: 109 TTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDN---- 161
T LG+ + AG + Q P GLAIV + L++ + LQLPS
Sbjct: 222 LTYTALGLVVAAAGLQF-QAALQHPYVLIGLAIVFTLLALSMFGLFTLQLPSSLQTRLTL 280
Query: 162 FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTT 221
R + P V ++ G L SPC+T L+ +L Y+A S + +GG L Y
Sbjct: 281 MSNRQQGGS-PGGV--FVMGAIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGTLYLYAL 337
Query: 222 GYVAPLLLAASFAGAL 237
G PL+L F L
Sbjct: 338 GMGLPLMLVTVFGNRL 353
>sp|Q8Z1A8|DSBD_SALTI Thiol:disulfide interchange protein DsbD OS=Salmonella typhi
GN=dsbD PE=3 SV=1
Length = 567
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 14/196 (7%)
Query: 50 SALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLA 108
+ L F++L A++ G G+ + +PC L + PL G + S + + + + G+A
Sbjct: 164 AQLPFSALWALLIGIGI--AFTPCVLPMYPLISGIVLGGRQRLSTGRALLLAFIYVQGMA 221
Query: 109 TTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDN---- 161
T LG+ + AG + Q P GLAIV + L++ + LQLPS
Sbjct: 222 LTYTALGLVVAAAGLQF-QAALQHPYVLIGLAIVFTLLALSMFGLFTLQLPSSLQTRLTL 280
Query: 162 FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTT 221
R + P V ++ G L SPC+T L+ +L Y+A S + +GG L Y
Sbjct: 281 MSNRQQGGS-PGGV--FVMGAIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGTLYLYAL 337
Query: 222 GYVAPLLLAASFAGAL 237
G PL+L F L
Sbjct: 338 GMGLPLMLVTVFGNRL 353
>sp|Q6D9J6|DSBD_ERWCT Thiol:disulfide interchange protein DsbD OS=Erwinia carotovora
subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672)
GN=dsbD PE=3 SV=1
Length = 577
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 81/184 (44%), Gaps = 7/184 (3%)
Query: 58 AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVG 117
A++ G G+ + +PC L + PL + + + + S+ + G+A T LLG+
Sbjct: 182 ALLIGIGV--AFTPCVLPMYPLIASLVLGRKEQLTPRRTLLLSMTYVQGMALTYTLLGLI 239
Query: 118 ASFAGKAYGQIGTGLPLAASGLA---IVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSS 174
+ AG + Q P GL+ I + L++ + LQLPS + S
Sbjct: 240 VAAAGLRF-QAALQHPYILIGLSVMFIALALSMFGLYTLQLPSSVQTRLTEWSNRQQGGS 298
Query: 175 VQ-AYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASF 233
V + G L SPC+T L+ +L Y+A S + L GG L Y G PL+L F
Sbjct: 299 VTGVFCMGALAGLICSPCTTAPLSAILLYIAQSGNMLAGGGTLYLYALGMGLPLILVTLF 358
Query: 234 AGAL 237
L
Sbjct: 359 GNKL 362
>sp|Q4QM23|DSBD_HAEI8 Thiol:disulfide interchange protein DsbD OS=Haemophilus influenzae
(strain 86-028NP) GN=dsbD PE=3 SV=1
Length = 579
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 82/196 (41%), Gaps = 26/196 (13%)
Query: 68 SLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAF--SLGLATTLALLGVGASFAGKAY 125
+ +PC L +LPL + G + + S+AF G+A T LLG+ + G +
Sbjct: 189 AFTPCVLPMLPLLSAIV--IGQQQRPNMMRAFSLAFLYVQGMALTYTLLGLAVAAIGLPF 246
Query: 126 GQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQ------ 176
QI P GL+I+ + L++ + +QLP+ N N S Q
Sbjct: 247 -QIALQHPYVMIGLSILFVALALSMFGLFTIQLPNSLQN------KLNTWSQKQTSGAFG 299
Query: 177 -AYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAG 235
A+ G+ L ASPC++ L+ L YVA S D G L G PL+L F
Sbjct: 300 GAFAMGMIAGLVASPCTSAPLSGALLYVAQSGDLFTGAATLYLLALGMGVPLMLITLFGN 359
Query: 236 ALQSLLSFRKFSSWIN 251
+ K W+N
Sbjct: 360 KI-----LPKSGEWMN 370
>sp|A6TH46|DSBD_KLEP7 Thiol:disulfide interchange protein DsbD OS=Klebsiella pneumoniae
subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
GN=dsbD PE=3 SV=1
Length = 598
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 89/195 (45%), Gaps = 16/195 (8%)
Query: 52 LSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATT 110
L FT+L A++ G G+ + +PC L + PL G + S A+ + + + G+A T
Sbjct: 197 LPFTALWALLIGIGI--AFTPCVLPMYPLISGIVLGGKQRLSTARALLLAFIYVQGMALT 254
Query: 111 LALLGVGASFAGKAYGQIGTGLPLAASGLA---IVMGLNLLEIIELQLPSFFDNF----- 162
LG+ + AG + Q P GL+ I++ L++ + LQLPS
Sbjct: 255 YTALGLVVAAAGLQF-QAALQHPYVLVGLSAVFILLALSMFGLFTLQLPSSLQTRLTLLS 313
Query: 163 DPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTG 222
+ R + P V + G L SPC+T L+ +L Y+A S + +GG L Y G
Sbjct: 314 NKRQGGS--PGGV--FAMGAIAGLICSPCTTAPLSAILLYIAQSGNLWLGGGTLYLYALG 369
Query: 223 YVAPLLLAASFAGAL 237
PL+L F L
Sbjct: 370 MGLPLILMTVFGNRL 384
>sp|A8AMR4|DSBD_CITK8 Thiol:disulfide interchange protein DsbD OS=Citrobacter koseri
(strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=dsbD
PE=3 SV=1
Length = 569
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 89/196 (45%), Gaps = 14/196 (7%)
Query: 50 SALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLA 108
+ L F++L A++ G G+ + +PC L + PL G + S + + + + G+A
Sbjct: 166 ARLPFSALWALLIGIGI--AFTPCVLPMYPLISGIVLGGKQRLSTGRALLLTFIYVQGMA 223
Query: 109 TTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDN---- 161
T LG+ + AG + Q P GLA+V + L++ + LQLPS
Sbjct: 224 LTYTALGLVVAAAGLQF-QAALQHPYVLIGLALVFTLLALSMFGLFTLQLPSSLQTRLTL 282
Query: 162 FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTT 221
R + P V ++ G L SPC+T L+ +L Y+A S + +GG L Y
Sbjct: 283 MSNRQQGGS-PGGV--FVMGAIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGTLYLYAL 339
Query: 222 GYVAPLLLAASFAGAL 237
G PL+L F L
Sbjct: 340 GMGLPLILITVFGNRL 355
>sp|Q4K909|DSBD_PSEF5 Thiol:disulfide interchange protein DsbD OS=Pseudomonas fluorescens
(strain Pf-5 / ATCC BAA-477) GN=dsbD PE=3 SV=1
Length = 583
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 7/166 (4%)
Query: 57 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGV 116
L FG GL+ + +PC+L +LP+ G + GSG S + + + ++ L +A A +GV
Sbjct: 171 LLAFFGFGLLLAFAPCSLPMLPILAGMV--VGSGASPRRGLALASSYVLCMALVYAGMGV 228
Query: 117 GASFAGKAYGQIGTGLPLAASGLA---IVMGLNLLEIIELQLPSFF-DNFDPRAAAANFP 172
A+ G Q P A +++ L + ELQ+P+ D + +
Sbjct: 229 IAALLGSNL-QAWLQQPWVLGSFAALFVLLSLPMFGFFELQMPALLRDRLEGASRQRQGG 287
Query: 173 SSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLS 218
S + + G AL PC T LA L Y+A + + L GG L +
Sbjct: 288 SLIGCGILGALSALLVGPCMTAPLAGGLLYIAQTGNALFGGLALFA 333
>sp|Q9I104|DSBD2_PSEAE Thiol:disulfide interchange protein DsbD 2 OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=dsbD2 PE=3 SV=1
Length = 587
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 75/163 (46%), Gaps = 7/163 (4%)
Query: 71 PCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAG---KAYGQ 127
PC+L +LP+ G + G+G R ++ S + L +A A LGV A+ G +A+ Q
Sbjct: 187 PCSLPMLPILAGLVVGSGAGPRRGLLLAGS--YVLSMALVYAGLGVVAALLGGNLQAWLQ 244
Query: 128 IGTGLPLAASGLAIVMGLNLLEIIELQLP-SFFDNFDPRAAAANFPSSVQAYLAGLTFAL 186
L + + L + + L + ELQLP + D D + S A G L
Sbjct: 245 -QPWLLGSFAALFVFLALPMFGFFELQLPAALRDRLDGLSRGRKGGSLAGAAALGALSGL 303
Query: 187 AASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLL 229
PC T LA L Y+A + + L GG +L S G PLLL
Sbjct: 304 LVGPCMTAPLAGALLYIAQTGNALHGGLVLFSLGLGIGMPLLL 346
>sp|Q9KJZ3|DSBD_PSEUK Thiol:disulfide interchange protein DsbD OS=Pseudomonas sp. (strain
JR1 / K1) GN=dsbD PE=3 SV=1
Length = 578
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 83/191 (43%), Gaps = 10/191 (5%)
Query: 68 SLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ 127
+ +PC+L +LP+ G I GSG + + + ++ + +A A +GV A+ G
Sbjct: 175 AFTPCSLPMLPILAGLI--VGSGATPKRGFALATSYVVSMALVYAAMGVLAAMLGANLQA 232
Query: 128 IGTGLPLAAS--GLAIVMGLNLLEIIELQLP-SFFDNFDPRAAAANFPSSVQAYLAGLTF 184
+ L S + +++ L + ELQLP + D + + S A + G
Sbjct: 233 LLQNPWLLGSFAAVFVLLALPMFGFFELQLPVAVRDRLENVSRNQRGGSLFGAGVLGALS 292
Query: 185 ALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFR 244
L PC T LA L Y+A S + L GG +L + G PLLL +
Sbjct: 293 GLLVGPCMTAPLAGALLYIAQSGNALHGGLILFAMGIGIGVPLLLLVTVGNRF-----LP 347
Query: 245 KFSSWINPMSG 255
K +W+N + G
Sbjct: 348 KPGAWMNLLKG 358
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,378,756
Number of Sequences: 539616
Number of extensions: 4031122
Number of successful extensions: 11736
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 11593
Number of HSP's gapped (non-prelim): 99
length of query: 277
length of database: 191,569,459
effective HSP length: 116
effective length of query: 161
effective length of database: 128,974,003
effective search space: 20764814483
effective search space used: 20764814483
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)