Query 023793
Match_columns 277
No_of_seqs 163 out of 1260
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 06:42:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023793.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023793hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00293 dipZ thiol:disulfide 100.0 1.6E-36 3.4E-41 301.7 -1.7 257 4-274 127-386 (571)
2 PF02683 DsbD: Cytochrome C bi 100.0 2.8E-35 6E-40 258.8 -0.9 207 60-267 1-211 (211)
3 COG0785 CcdA Cytochrome c biog 100.0 2.2E-33 4.8E-38 248.1 0.1 207 55-265 11-219 (220)
4 COG4232 Thiol:disulfide interc 100.0 4.8E-32 1E-36 263.4 -0.4 255 4-273 126-386 (569)
5 COG2836 Uncharacterized conser 99.9 5.7E-23 1.2E-27 179.2 0.3 203 57-270 6-219 (232)
6 PF13386 DsbD_2: Cytochrome C 99.9 2.7E-23 5.9E-28 181.2 -2.5 189 60-264 2-199 (199)
7 PRK10019 nickel/cobalt efflux 98.3 2.6E-07 5.6E-12 84.6 2.6 212 52-271 12-275 (279)
8 PF11139 DUF2910: Protein of u 98.0 1.2E-05 2.5E-10 70.9 5.9 167 97-269 28-212 (214)
9 COG2215 ABC-type uncharacteriz 97.4 0.00014 3.1E-09 66.8 3.2 202 54-268 55-299 (303)
10 PF01810 LysE: LysE type trans 96.7 0.00042 9.1E-09 59.4 0.3 164 96-268 22-190 (191)
11 COG0785 CcdA Cytochrome c biog 95.6 0.0017 3.7E-08 57.8 -1.7 90 55-147 124-219 (220)
12 PF02683 DsbD: Cytochrome C bi 95.6 0.0023 5E-08 56.1 -0.9 88 58-148 118-210 (211)
13 PRK10520 rhtB homoserine/homos 95.4 0.0031 6.8E-08 54.9 -0.7 163 97-269 36-204 (205)
14 PRK00293 dipZ thiol:disulfide 94.9 0.011 2.3E-07 59.7 1.4 91 174-266 169-262 (571)
15 COG1280 RhtB Putative threonin 94.8 0.0071 1.5E-07 53.2 -0.4 131 130-269 73-207 (208)
16 PF09930 DUF2162: Predicted tr 93.0 0.059 1.3E-06 48.1 2.1 23 251-273 160-183 (224)
17 TIGR00949 2A76 The Resistance 92.7 0.04 8.6E-07 47.0 0.5 159 97-264 18-184 (185)
18 PRK09304 arginine exporter pro 92.7 0.076 1.7E-06 46.4 2.3 162 100-271 36-204 (207)
19 PRK10958 leucine export protei 92.6 0.027 5.9E-07 49.5 -0.6 27 242-268 184-210 (212)
20 PF01914 MarC: MarC family int 92.3 0.02 4.2E-07 50.3 -1.9 79 64-148 10-88 (203)
21 PRK10995 inner membrane protei 92.2 0.015 3.3E-07 51.6 -2.8 81 62-148 12-92 (221)
22 PRK11111 hypothetical protein; 89.6 0.049 1.1E-06 48.3 -2.0 79 63-148 15-94 (214)
23 TIGR00427 membrane protein, Ma 89.5 0.07 1.5E-06 46.8 -1.1 79 64-148 13-91 (201)
24 PRK10229 threonine efflux syst 89.4 0.11 2.5E-06 45.1 0.1 164 97-269 35-206 (206)
25 PF09948 DUF2182: Predicted me 87.0 0.12 2.7E-06 45.0 -1.2 143 96-265 35-190 (191)
26 COG2095 MarC Multiple antibiot 85.9 0.16 3.4E-06 44.8 -1.1 76 67-148 16-91 (203)
27 PF03824 NicO: High-affinity n 85.4 0.44 9.5E-06 43.6 1.6 65 55-127 3-67 (282)
28 PF13386 DsbD_2: Cytochrome C 85.0 0.13 2.8E-06 44.7 -2.1 82 56-145 117-198 (199)
29 TIGR00948 2a75 L-lysine export 80.5 0.95 2.1E-05 38.3 1.6 147 100-257 22-176 (177)
30 PRK10323 cysteine/O-acetylseri 79.3 0.46 9.9E-06 41.1 -0.7 23 244-266 172-194 (195)
31 PRK10019 nickel/cobalt efflux 74.2 0.54 1.2E-05 43.4 -1.8 83 61-148 181-270 (279)
32 COG4232 Thiol:disulfide interc 68.1 2.3 5E-05 42.8 1.0 90 172-263 168-260 (569)
33 PRK10739 putative antibiotic t 57.7 2 4.4E-05 37.5 -1.4 79 64-148 10-88 (197)
34 TIGR00802 nico high-affinity n 56.1 4.7 0.0001 37.1 0.6 98 92-189 31-157 (280)
35 COG5486 Predicted metal-bindin 49.8 2.5 5.4E-05 38.2 -2.1 169 69-265 97-278 (283)
36 PRK11469 hypothetical protein; 48.7 12 0.00025 32.5 1.9 26 245-270 161-186 (188)
37 COG2215 ABC-type uncharacteriz 44.0 4.6 0.0001 37.5 -1.4 84 60-148 204-297 (303)
38 PRK13747 putative mercury resi 36.6 23 0.00049 26.2 1.5 30 174-204 14-43 (78)
39 COG2119 Predicted membrane pro 35.2 2.2E+02 0.0048 24.8 7.6 148 104-270 37-186 (190)
40 COG2836 Uncharacterized conser 34.1 13 0.00028 33.3 -0.1 54 213-266 44-98 (232)
41 PF05052 MerE: MerE protein; 29.9 35 0.00075 25.1 1.5 29 174-203 14-42 (75)
42 COG4657 RnfA Predicted NADH:ub 25.3 57 0.0012 27.9 2.3 55 177-233 100-154 (193)
43 PF03596 Cad: Cadmium resistan 25.0 20 0.00043 31.3 -0.6 21 248-268 161-181 (191)
44 COG1279 Lysine efflux permease 24.4 24 0.00053 31.0 -0.1 51 218-268 147-201 (202)
45 PRK02830 Na(+)-translocating N 22.2 27 0.00059 30.7 -0.2 79 179-264 112-190 (202)
46 PRK01061 Na(+)-translocating N 21.8 27 0.00059 31.6 -0.3 80 178-264 120-199 (244)
No 1
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=100.00 E-value=1.6e-36 Score=301.66 Aligned_cols=257 Identities=25% Similarity=0.331 Sum_probs=194.9
Q ss_pred CCCCCCCCcccccceeeeccCCcccccccccccccchhhHHHhhhcccccchhhHHhhccccccccCcceeeeecccccc
Q 023793 4 NSNYFPSSQEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGY 83 (277)
Q Consensus 4 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~f~aGlltslsPC~l~~lp~~l~~ 83 (277)
..||||.|+++.....+.++....+ .. +.++ + +++ ++..+..++.+|++|++++++||++||+|+++++
T Consensus 127 G~CYPP~t~~~~l~~~~~~~~~~~~---~~--~~~~---~--~~~-~~~~~~~l~~afl~Glll~l~PCvlP~lpi~~~~ 195 (571)
T PRK00293 127 GFCYPPETRTVPLSAVAANSAPAPA---PA--PAGQ---A--TAS-LASLPWSLLWFFLIGIGLAFTPCVLPMYPILSGI 195 (571)
T ss_pred CeecCCeeEEEEecccccccCCccC---CC--Cccc---c--ccc-cccchHHHHHHHHHHHHHhccchhhHhHHHHHHH
Confidence 4799999999876432221111100 00 0011 1 111 1233568889999999999999999999999998
Q ss_pred ccccCCCCccceeecchhhhhhhHHHHHHHHhhhhhccccccccc--cCCccchhhhhHHHhhchhHHHHHhhcCCccC-
Q 023793 84 IGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQI--GTGLPLAASGLAIVMGLNLLEIIELQLPSFFD- 160 (277)
Q Consensus 84 i~~~~~~~~r~~~~~~~~~f~lG~~~ty~~LG~l~~~~G~~~~~~--~~~~~~~~g~l~il~GL~ll~~~~~~~p~~~~- 160 (277)
+.+.+++++|++.+..++.|++|++++|+++|++++.+|..++.. ..++.++.+++++++|++++|.+++++|....
T Consensus 196 ~~~~~~~~~~~~~~~~~l~y~lG~~~ty~~lG~~a~~~G~~~~~~~q~~~~~~~~~~l~v~lgL~~~G~~~l~lp~~~~~ 275 (571)
T PRK00293 196 VLGGKQRLSTARALLLSFVYVQGMALTYTLLGLVVAAAGLQFQAALQHPYVLIGLSILFVLLALSMFGLFTLQLPSSLQT 275 (571)
T ss_pred HhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcceeccCcHHHHH
Confidence 876432235667788899999999999999999999999877532 23567788899999999999998887776432
Q ss_pred CCChhhhhcCCChhHHHHHhhhhhhhccCCCChHHHHHHHHHHhhcCCCcccceeeeeeecchhHHHHHHHHHHHHHHHH
Q 023793 161 NFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSL 240 (277)
Q Consensus 161 ~~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~iL~~a~~~g~~~~G~~ll~~fglG~~lPlll~~~~~~~l~~~ 240 (277)
+.++...+++.++..++|++|+++|++++||++|++++++.++++++|+..|++.|++||+|+++|+++++.+.+++ +
T Consensus 276 ~~~~~~~~~~~~~~~gaf~~G~l~~l~~~PC~~p~L~~~L~~aa~tg~~~~g~~~l~~~gLG~~~Plll~~~~~~~~--l 353 (571)
T PRK00293 276 RLTLLSNRQQGGSLGGVFVMGAISGLICSPCTTAPLSGALLYIAQSGDLLLGGLTLYLLALGMGLPLILITTFGNKL--L 353 (571)
T ss_pred HhhhhhhcccCCchHhHHHHHHHHHHHhCCCchHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--c
Confidence 12221122344668999999999999999999999999999999999999999999999999999999999886543 2
Q ss_pred HhhcccccccccccchhhhcCchhhhhhhccccc
Q 023793 241 LSFRKFSSWINPMSGALLLGGGLYTFLDRLFPTT 274 (277)
Q Consensus 241 ~~~~~~~~~i~~i~G~lli~~Gi~~ll~~~~~~~ 274 (277)
.+.++|.++++++.|++|+++|+| ++.+++|.+
T Consensus 354 pk~g~wm~~~k~~~G~~ll~~~~~-ll~~~~~~~ 386 (571)
T PRK00293 354 PKSGPWMNQVKTAFGFVLLALPVF-LLERVLPGV 386 (571)
T ss_pred ccCccHHHHHHHHHHHHHHHHHHH-HHHHHhhHH
Confidence 344556667788999999999999 666777764
No 2
>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation. DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=100.00 E-value=2.8e-35 Score=258.83 Aligned_cols=207 Identities=41% Similarity=0.630 Sum_probs=174.5
Q ss_pred hhccccccccCcceeeeeccccccccccCCCCccce---eecchhhhhhhHHHHHHHHhhhhhccccccccccCCccchh
Q 023793 60 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQ---IIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAA 136 (277)
Q Consensus 60 ~f~aGlltslsPC~l~~lp~~l~~i~~~~~~~~r~~---~~~~~~~f~lG~~~ty~~LG~l~~~~G~~~~~~~~~~~~~~ 136 (277)
+|.+|+++++|||++|++|++++++.+++++++|++ .+..++.|.+|..++|..+|..++.+|+.+++..+++..+.
T Consensus 1 af~aGll~~~sPC~lp~lp~~l~~~~~~~~~~~~~~~~~~~~~~l~f~~G~~~~~~~lG~~~~~~g~~~~~~~~~~~~i~ 80 (211)
T PF02683_consen 1 AFLAGLLSSFSPCVLPVLPLYLSYIAGSGASSRRKGKRVALLLGLAFVLGFALVFALLGLGAGALGSFFGQISPWLYIIA 80 (211)
T ss_pred ChHHHHHHhcCcHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999887543222322 47889999999999999999999999999987777889999
Q ss_pred hhhHHHhhchhHHHHHhhcCCccCCCChhhhhcCCChhHHHHHhhhhhhhccCCCChHHHHHHHHHHhhcCCCcccceee
Q 023793 137 SGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLL 216 (277)
Q Consensus 137 g~l~il~GL~ll~~~~~~~p~~~~~~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~iL~~a~~~g~~~~G~~ll 216 (277)
|++++++|+++++.++.+.++..+.. .+.+++++++..++|++|+.++++++||++|++.+++.++++++|+.+|..++
T Consensus 81 g~~~i~~Gl~~l~~~~~~~l~~~~~~-~~~~~~~~~~~~gaf~lG~~~~l~~~PC~~p~l~~il~~a~~~~~~~~~~~ll 159 (211)
T PF02683_consen 81 GVLLILFGLSLLGLFEIPFLSRPRLG-LRSKRKSGGGLLGAFLLGLLFGLVWSPCTGPILAAILALAASSGSVLQGLLLL 159 (211)
T ss_pred HHHHHHHHHHHHHhhcchhhhhhhhh-hhhhcCCCCCcccHHHHHHHHHHHhhhcchHHHHHHHHHHHcCCchHHHHHHH
Confidence 99999999999987764332221111 11122344557899999999999999999999999999999999999999999
Q ss_pred eeeecchhHHHHHHHHHHHHHH-HHHhhcccccccccccchhhhcCchhhhh
Q 023793 217 LSYTTGYVAPLLLAASFAGALQ-SLLSFRKFSSWINPMSGALLLGGGLYTFL 267 (277)
Q Consensus 217 ~~fglG~~lPlll~~~~~~~l~-~~~~~~~~~~~i~~i~G~lli~~Gi~~ll 267 (277)
++|++|+++|+++++.+.+..+ +.++.+||++|+|++.|++++++|+|+++
T Consensus 160 ~~y~lG~~lPll~~~~~~~~~~~~~~~~~~~~~~i~~~~G~lli~~g~~~l~ 211 (211)
T PF02683_consen 160 LAYGLGFGLPLLLIGLFSGSLLRRLRKLRRWSRWIKRISGILLIALGLYLLT 211 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999888765 66678899999999999999999999763
No 3
>COG0785 CcdA Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.2e-33 Score=248.09 Aligned_cols=207 Identities=34% Similarity=0.513 Sum_probs=182.7
Q ss_pred hhhHHhhccccccccCcceeeeeccccccccccCCCCccceeecchhhhhhhHHHHHHHHhhhhhccccccccccCCccc
Q 023793 55 TSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPL 134 (277)
Q Consensus 55 ~~l~~~f~aGlltslsPC~l~~lp~~l~~i~~~~~~~~r~~~~~~~~~f~lG~~~ty~~LG~l~~~~G~~~~~~~~~~~~ 134 (277)
.++..+|.+|+++++|||++|++|.+++++.+.+ .++|++.+.+++.|.+|..++|..+|+.+...|+.+....+++++
T Consensus 11 ~~~~~aflaGlls~lSPCilpllP~~l~~~~~~~-~~~r~~~~~~~l~FvlG~~~vf~~lG~~~~~~~~~~~~~~~~l~~ 89 (220)
T COG0785 11 VSILLAFLAGLLSFLSPCVLPLLPAYLSYLAGGS-LGARKSVLLASLLFVLGFATVFVLLGIGASGLGAFLPLNRLYLRY 89 (220)
T ss_pred hHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899999999999999999999999987643 233778889999999999999999999999999999877678999
Q ss_pred hhhhhHHHhhchhHHHHHhhcCCccCCCChhhhhcCCChhHHHHHhhhhhhhccCCCChHHHHHHHHHHhhcCCCcccce
Q 023793 135 AASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGT 214 (277)
Q Consensus 135 ~~g~l~il~GL~ll~~~~~~~p~~~~~~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~iL~~a~~~g~~~~G~~ 214 (277)
+.|++++++|+++++..+.+.++...+++. +.+.++..++|.+|++++++|+||.+|++.++++++++++|...|..
T Consensus 90 i~gi~li~~Gl~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~f~lGl~f~~~wtPC~gPil~sil~laa~~~~~~~g~~ 166 (220)
T COG0785 90 IAGILLILLGLLFLGVLRLPLLLRFARFQL---KGKSVTALGAFLLGLLFALGWTPCIGPILGSILALAASTGSVVLGAL 166 (220)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcchhhh---ccCCCcchhHHHHHHHHHHHhccchhHHHHHHHHHHhcCCcHHHHHH
Confidence 999999999999999887666554433321 12356789999999999999999999999999999999999999999
Q ss_pred eeeeeecchhHHHHHHHHHHHHHHH--HHhhcccccccccccchhhhcCchhh
Q 023793 215 LLLSYTTGYVAPLLLAASFAGALQS--LLSFRKFSSWINPMSGALLLGGGLYT 265 (277)
Q Consensus 215 ll~~fglG~~lPlll~~~~~~~l~~--~~~~~~~~~~i~~i~G~lli~~Gi~~ 265 (277)
+|++|++|.++|+++++.+.++..+ .++++||++++++++|++++.+|+++
T Consensus 167 ll~~Y~lGl~lP~~~~~~~~~~~~~~~~~~l~k~~~~i~~~~G~lli~~Gv~l 219 (220)
T COG0785 167 LLAAYALGLALPFLLLALLSGRALKAFSRKLRRHSGAIEIVGGALLILLGLLL 219 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988754 78899999999999999999999875
No 4
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.97 E-value=4.8e-32 Score=263.40 Aligned_cols=255 Identities=30% Similarity=0.424 Sum_probs=194.1
Q ss_pred CCCCCCCCcccccceeeeccCCcccccccccccccchhhHHHhhhcccccchhhHHhhccccccccCcceeeeecccccc
Q 023793 4 NSNYFPSSQEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGY 83 (277)
Q Consensus 4 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~f~aGlltslsPC~l~~lp~~l~~ 83 (277)
..||||+|++++......+.....+ .=..+|.. .....+....+++.+|+.|++-.|+||++||+|+..+.
T Consensus 126 g~cypp~t~~~~~~~~~~a~~~~~~-----~~~~~~~~----~~~~~~~~~~~ll~afl~GLlL~ftPCVLPmlpl~s~~ 196 (569)
T COG4232 126 GFCYPPETRRFDLSGVVAASAAPSA-----PPAAEQQE----GADSAATLKWSLLLAFLGGLLLNFTPCVLPMLPLLSGI 196 (569)
T ss_pred ccccCCccceeecccccccccCCCC-----CCcccccc----cccccccCCHHHHHHHHHHHHHhhccHhhhhHHHHHHH
Confidence 3799999999998522222222111 01112221 12222333456889999999999999999999999988
Q ss_pred ccccCCCCccceeecchhhhhhhHHHHHHHHhhhhhccccccccc-cC-CccchhhhhHHHhhchhHHHHHhhcCCccCC
Q 023793 84 IGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQI-GT-GLPLAASGLAIVMGLNLLEIIELQLPSFFDN 161 (277)
Q Consensus 84 i~~~~~~~~r~~~~~~~~~f~lG~~~ty~~LG~l~~~~G~~~~~~-~~-~~~~~~g~l~il~GL~ll~~~~~~~p~~~~~ 161 (277)
+.+.+++.++++....+..|..|++++|+++|+.++..|..++.. |+ ++-....+++++++++|+|.+++++|+..+.
T Consensus 197 v~g~~~~~s~~ra~~Ls~~yv~~mALay~~lgl~~~~~gl~~q~qLQ~P~vl~~la~lf~llALSMfGlFelqlP~s~q~ 276 (569)
T COG4232 197 VLGSAKRASKARAFGLSFVYVQGMALAYTLLGLVAAAAGLGWQAQLQQPWVLGGLAALFVLLALSMFGLFELQLPSSLQT 276 (569)
T ss_pred HhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhHhHcccHHHHHHHHHHHHHHHHhhhheeecCcHHHhh
Confidence 776543444455566677888888899999999999988776532 22 3344556678999999999999999986543
Q ss_pred -CChhhhhcCCChhHHHHHhhhhhhhccCCCChHHHHHHHHHHhhcCCCcccceeeeeeecchhHHHHHHHHHHHHHHHH
Q 023793 162 -FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSL 240 (277)
Q Consensus 162 -~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~iL~~a~~~g~~~~G~~ll~~fglG~~lPlll~~~~~~~l~~~ 240 (277)
++....+++.++..++|.+|++-+++.+||++|.+.+++.|+++++|+..|...+.++++|+++|+++++.+.+++
T Consensus 277 ~l~~~S~~~~gG~~~GaF~mG~La~Lv~sPCt~ppLa~aL~Yiaqsg~~~~g~~~l~al~LGMg~Plllv~~f~~~~--- 353 (569)
T COG4232 277 RLTQQSNRASGGSIVGAFFMGALAGLVVSPCTAPPLAGALLYIAQSGNALLGGLALYALGLGMGLPLLLIGVFGNRL--- 353 (569)
T ss_pred HHhhhhcccCCCchHHHHHHHHHHHHhcCcCcchhHHHHHHHHHhcchHHHHHHHHHHHHHhcccchhhheeccccc---
Confidence 3333333444558999999999999999999999999999999999999999999999999999999999988443
Q ss_pred Hhhccccccccc---ccchhhhcCchhhhhhhcccc
Q 023793 241 LSFRKFSSWINP---MSGALLLGGGLYTFLDRLFPT 273 (277)
Q Consensus 241 ~~~~~~~~~i~~---i~G~lli~~Gi~~ll~~~~~~ 273 (277)
++|.++|++. +.|.+|++..+| ++.|++|.
T Consensus 354 --LPk~G~WM~~vK~~fGFvlLa~aiw-Ll~~~~~e 386 (569)
T COG4232 354 --LPKPGPWMNTVKQAFGFVLLATAIW-LLWRVLPE 386 (569)
T ss_pred --CCCCCcHHHHHHHHHHHHHHHHHHH-HHHHHhhh
Confidence 5777777665 689999999999 78888876
No 5
>COG2836 Uncharacterized conserved protein [Function unknown]
Probab=99.85 E-value=5.7e-23 Score=179.24 Aligned_cols=203 Identities=24% Similarity=0.304 Sum_probs=153.9
Q ss_pred hHHhhccccccccCcceeeeeccccccccccCCCCccceeecchhhhhhhHHHHHHHHhhhhhccccccccc---cCCcc
Q 023793 57 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQI---GTGLP 133 (277)
Q Consensus 57 l~~~f~aGlltslsPC~l~~lp~~l~~i~~~~~~~~r~~~~~~~~~f~lG~~~ty~~LG~l~~~~G~~~~~~---~~~~~ 133 (277)
+..++++|++++ .||..+|-|+..++......+++++ .++.++.|++||++||+++|.+.+.+|..+++. +....
T Consensus 6 ~l~~~~~g~lg~-gHC~gMCGGi~~afs~~~~~~~~~~-~~~~~~lyNlGRi~SYallG~i~G~lG~~l~~~~~~~~~l~ 83 (232)
T COG2836 6 FLGIFLLGLLGG-GHCLGMCGGIVLAFSLLIPSKVSSS-RLKLHLLYNLGRILSYALLGAILGALGVSLGQSAGLRGVLF 83 (232)
T ss_pred HHHHHHHHHhcC-ccHHHhcchHHHHHHHhccccchHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334788888776 5999999999988875543333322 278899999999999999999999999777643 45678
Q ss_pred chhhhhHHHhhchhHHH-----HHhhcCCccCCCChhh---hhcCCChhHHHHHhhhhhhhccCCCChHHHHHHHHHHhh
Q 023793 134 LAASGLAIVMGLNLLEI-----IELQLPSFFDNFDPRA---AAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAT 205 (277)
Q Consensus 134 ~~~g~l~il~GL~ll~~-----~~~~~p~~~~~~~~~~---~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~iL~~a~~ 205 (277)
+++|+++|++|+.++.. ...+.|...+++.+.. +..+.++..+++++|+++|+ .||. ++++.++++..
T Consensus 84 i~ag~~li~lGL~l~~~~~~~~~~~~~p~i~~~~~~~l~~~r~l~~~~~~~~~~lG~~wG~--lPCG--lVYs~l~~A~~ 159 (232)
T COG2836 84 IIAGALLIALGLYLLARGGMWSGALKLPFIGGFLWRLLKPIRLLPLKPLPGALFLGMLWGL--LPCG--LVYSALAYALS 159 (232)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHhhchhcchHHHHhhhhhhccccCcchHHHHHHHHhcc--cchH--HHHHHHHHHHH
Confidence 99999999999999522 2223444322221111 11244557899999999996 9995 77889999999
Q ss_pred cCCCcccceeeeeeecchhHHHHHHHHHHHHHHHHHhhcccccccccccchhhhcCchhhhhhhc
Q 023793 206 SKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRL 270 (277)
Q Consensus 206 ~g~~~~G~~ll~~fglG~~lPlll~~~~~~~l~~~~~~~~~~~~i~~i~G~lli~~Gi~~ll~~~ 270 (277)
++|+.+|+++|++||+||..+++..+.+.+.+++. .+++.+|.+|.+++.+|+|.++...
T Consensus 160 tgS~~~Gal~mlaFGlGTlP~ll~~G~~s~~~s~~-----~r~~~~rl~~gl~~v~g~~~l~~g~ 219 (232)
T COG2836 160 TGSAFEGALVMLAFGLGTLPNLLAMGIFSSKLSKS-----SRKRLNRLSGGLMVVVGLIGLWKGL 219 (232)
T ss_pred cCCHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHH-----HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999988888899988887543 3456778888888888877665443
No 6
>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region
Probab=99.85 E-value=2.7e-23 Score=181.19 Aligned_cols=189 Identities=28% Similarity=0.417 Sum_probs=135.5
Q ss_pred hhccccccccCcceeeeeccccccccccCCCCccceeecchhhhhhhHHHHHHHHhhhhhcccccccccc--CCc----c
Q 023793 60 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIG--TGL----P 133 (277)
Q Consensus 60 ~f~aGlltslsPC~l~~lp~~l~~i~~~~~~~~r~~~~~~~~~f~lG~~~ty~~LG~l~~~~G~~~~~~~--~~~----~ 133 (277)
+|+.|+++++ ||..+|.|+..++..++ +| +.+ ..+.|++||+++|+.+|++++.+|+.+.+.. +.+ .
T Consensus 2 a~~~Gl~gs~-hC~~mCg~~~~~~~~~~----~~-~~~-~~l~y~~GRi~sY~llG~l~g~~G~~l~~~~~~~~l~~~~~ 74 (199)
T PF13386_consen 2 AFLLGLLGSL-HCIGMCGPIALALSLSQ----PK-RWL-RHLLYNLGRILSYTLLGALAGLLGSGLSLSGWLPGLRRIIG 74 (199)
T ss_pred HHHHHHHHhh-hHHHhHHHHHHHHhccC----cc-cHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 6889999999 99999999999885431 22 224 5899999999999999999999999986432 233 3
Q ss_pred chhhhhHHHhhchhHHHHHh-hcCCccCCCChhhhh-cCC-ChhHHHHHhhhhhhhccCCCChHHHHHHHHHHhhcCCCc
Q 023793 134 LAASGLAIVMGLNLLEIIEL-QLPSFFDNFDPRAAA-ANF-PSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPL 210 (277)
Q Consensus 134 ~~~g~l~il~GL~ll~~~~~-~~p~~~~~~~~~~~~-~~~-~~~~~~fllG~~~gl~~~PC~~p~l~~iL~~a~~~g~~~ 210 (277)
++.+.+++.+|+.++...+. +++...++..++..+ .++ ++..++|.+|+++|+ .|| |.++..+..++.++|+.
T Consensus 75 ~~~~~~~l~~gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~l~gl--lPC--g~~y~~l~~A~~s~s~~ 150 (199)
T PF13386_consen 75 ILLGLLGLFLGLRLLGGPRLPKLGRLGHGLARRLQPLLRKLKGPWGAFLLGFLNGL--LPC--GPVYFALALAAASGSPL 150 (199)
T ss_pred HHHHHHHHHHHHHHHhccchhhHHhccHHHHHHhHHHHHhcCCccHHHHHHHHHHH--hHH--HHHHHHHHHHHHcCChH
Confidence 44555555666666632111 111111111111111 122 677899999999998 799 35667777888999999
Q ss_pred ccceeeeeeecchhHHHHHHHHHHHHHHHHHhhcccccccccccchhhhcCchh
Q 023793 211 IGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLY 264 (277)
Q Consensus 211 ~G~~ll~~fglG~~lPlll~~~~~~~l~~~~~~~~~~~~i~~i~G~lli~~Gi~ 264 (277)
+|+++|++|++|+..|++.++...+.+++ +.+++..|++|+++++.|+|
T Consensus 151 ~G~l~m~~FgLGT~p~ll~~~~~~~~l~~-----~~~~~~~r~~g~~~i~~G~~ 199 (199)
T PF13386_consen 151 YGALLMLAFGLGTLPALLLAGLLAGKLSR-----RLRRRLLRLAGVLLIILGIY 199 (199)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHC
Confidence 99999999999998888888877776643 33355566999999999987
No 7
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=98.33 E-value=2.6e-07 Score=84.64 Aligned_cols=212 Identities=18% Similarity=0.203 Sum_probs=130.1
Q ss_pred ccchhhHHhhccccccccCcceeeeeccccccccccCCCCccceeecchhhhhhhHHHHHHHHhhhhhcccccccc--cc
Q 023793 52 LSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ--IG 129 (277)
Q Consensus 52 ~~~~~l~~~f~aGlltslsPC~l~~lp~~l~~i~~~~~~~~r~~~~~~~~~f~lG~~~ty~~LG~l~~~~G~~~~~--~~ 129 (277)
.-|.-+...|+.|++-++.|==.= .+..+|+..+ +++.++.+..++.-.++=+.+-.+++.+.-.+.+.+.. ..
T Consensus 12 ~~~~l~~~~f~yG~~HAlgPGHGK--avi~sYlv~~--~~~~~~a~~lgl~~~l~hta~~lv~~~~~~~l~~~~~~~~~~ 87 (279)
T PRK10019 12 NAWFFIPSAILLGALHGLEPGHSK--TMMAAFIIAI--KGTIKQAVMLGLAATISHTAVVWLIAFGGMYLSRRFTAQSAE 87 (279)
T ss_pred hHHHHHHHHHHHHHHHhcCCCcch--HHHhhhhhcC--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 345667789999999999886543 2346777652 23444555555555555544444444443333444432 34
Q ss_pred CCccchhhhhHHHhhchhHHH-HHhh--c---CCc--cCC---------------------------CChhh--------
Q 023793 130 TGLPLAASGLAIVMGLNLLEI-IELQ--L---PSF--FDN---------------------------FDPRA-------- 166 (277)
Q Consensus 130 ~~~~~~~g~l~il~GL~ll~~-~~~~--~---p~~--~~~---------------------------~~~~~-------- 166 (277)
.++..+.+++++.+|+.++-. .+-+ . +.. -+. .+...
T Consensus 88 ~~le~~S~~lii~lGl~ll~r~~r~~~~~~~~~h~~~h~h~h~h~h~~~c~~~~~~~~~~~~gh~h~~~~~~~~~a~~~r 167 (279)
T PRK10019 88 PWLQLISAVIIISTAFWMFWRTWRGERNWLENMHHHDHDHDHDHDHEHHHDHGHHHHHEHGATAEEYQDAHERAHANDIK 167 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCccCCCCCCCcCccccccccccccccccCCCCHHHhhccchhh
Confidence 577889999999999999832 1110 0 000 000 00000
Q ss_pred -hh-cCCChhHHHHHhhhhhhhccCCCChHHHHHHHHHHhhcCCCcccceeeeeeecchhHHHHHHHHHHH-HHH-HHHh
Q 023793 167 -AA-ANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAG-ALQ-SLLS 242 (277)
Q Consensus 167 -~~-~~~~~~~~~fllG~~~gl~~~PC~~p~l~~iL~~a~~~g~~~~G~~ll~~fglG~~lPlll~~~~~~-~l~-~~~~ 242 (277)
+. .+..+..+-+.+|+.-|+ .||++.++. +..+.+-+++..|+.+.++|++|+.+-+..++.... ..+ ..++
T Consensus 168 ~~~~~~~~~~~~~l~igl~~Gl--~PCpgAl~V--LL~a~~lg~~~~Gi~~vlafslGtaltm~~vgll~~~~~r~~~~~ 243 (279)
T PRK10019 168 RRFDGREVTNGQILLFGLTGGL--IPCPAAITV--LLICIQLKALTLGATLVLSFSIGLALTLVTVGVGAAISVQQAAKR 243 (279)
T ss_pred hhhcccccccchhhHHHHHhcc--CCCHHHHHH--HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000112233578888887 899877754 334556789999999999999999999998887663 233 2223
Q ss_pred hcccccccc---cccchhhhcCchhhhhhhcc
Q 023793 243 FRKFSSWIN---PMSGALLLGGGLYTFLDRLF 271 (277)
Q Consensus 243 ~~~~~~~i~---~i~G~lli~~Gi~~ll~~~~ 271 (277)
..+..++++ .++|++.+++|+|+.++.+.
T Consensus 244 ~~~~~~~~~~~p~~s~~l~i~~G~~~~~~~~~ 275 (279)
T PRK10019 244 WSGFNTLARRAPYFSSLLIGLVGVYMGVHGFM 275 (279)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555 89999999999998887653
No 8
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=97.99 E-value=1.2e-05 Score=70.95 Aligned_cols=167 Identities=20% Similarity=0.181 Sum_probs=101.9
Q ss_pred ecchhhhhhhHHHHHHHHhhhhhccccccc-cc-------cCCccchhhhhHHHhhchhHHHHHhhcCCcc-CCCChhh-
Q 023793 97 IGDSIAFSLGLATTLALLGVGASFAGKAYG-QI-------GTGLPLAASGLAIVMGLNLLEIIELQLPSFF-DNFDPRA- 166 (277)
Q Consensus 97 ~~~~~~f~lG~~~ty~~LG~l~~~~G~~~~-~~-------~~~~~~~~g~l~il~GL~ll~~~~~~~p~~~-~~~~~~~- 166 (277)
.++...|.+|...+|...|+..-...+... .. ..++.++.|++++++|......- |+.. ++..+|+
T Consensus 28 ~~~~~af~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lGv~ll~~a~~~~~~~----~~~~~~~~~~~~~ 103 (214)
T PF11139_consen 28 RRNLLAFLAGWFLGYLAVGLVLLFGLDALPSGSSSAPSPVVGWLQLVLGVLLLLLAVRVWRRR----PRPDPPSRPPRWL 103 (214)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCccHHHHHHHHHHHHHHHHHHHHhhcc----cccCCCCCchhhh
Confidence 456899999999999999988776655543 11 11234556666666665544211 1111 1111121
Q ss_pred hhcCCChhHHHHHhhhhhhhccCCCChHHHHHHHHHHhhcCCCcccceeeeeeecchhHHHHHHHH----HHHHHHHHHh
Q 023793 167 AAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAAS----FAGALQSLLS 242 (277)
Q Consensus 167 ~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~iL~~a~~~g~~~~G~~ll~~fglG~~lPlll~~~----~~~~l~~~~~ 242 (277)
.+.+.....+++.+|+..+++..+...|++.++.....++-++..-...+..|.+-+..|..+... ...+.++ .
T Consensus 104 ~~~~~~~~~~~~~lg~~~~~~~~~~~~~~laa~~~I~~~~~~~~~~~~~l~~y~~i~~~~~~~pll~~~~~~~r~~~--~ 181 (214)
T PF11139_consen 104 ARLDSASPGGAFWLGFVLGLANPKTMLPYLAAIAIIAASGLSPGTQVVALVVYCLIASLPALLPLLAYLVAPERAEP--W 181 (214)
T ss_pred hhhhcCCchhHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--H
Confidence 122345567889999999998877776666665555555556677788888999998887765332 2222221 2
Q ss_pred hccccccc----ccccchhhhcCchhhhhhh
Q 023793 243 FRKFSSWI----NPMSGALLLGGGLYTFLDR 269 (277)
Q Consensus 243 ~~~~~~~i----~~i~G~lli~~Gi~~ll~~ 269 (277)
++|.++|+ +.+..+++.++|++++.+.
T Consensus 182 l~r~~~wl~~~~~~i~~~i~~i~G~~l~~~G 212 (214)
T PF11139_consen 182 LERLRSWLRRHSRQILAVILLIVGALLLGDG 212 (214)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHHhh
Confidence 23333333 3467888888888876654
No 9
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=97.35 E-value=0.00014 Score=66.80 Aligned_cols=202 Identities=22% Similarity=0.234 Sum_probs=114.2
Q ss_pred chhhHHhhccccccccCcceeeeeccccccccccCCCCccceeecchhhhhhhHHH-----HHHHHhhhhhcc-ccc--c
Q 023793 54 FTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLAT-----TLALLGVGASFA-GKA--Y 125 (277)
Q Consensus 54 ~~~l~~~f~aGlltslsPC~l~~lp~~l~~i~~~~~~~~r~~~~~~~~~f~lG~~~-----ty~~LG~l~~~~-G~~--~ 125 (277)
|..+...|+-|.+-++.|=-.=. +..+|+.+.+ .+ +++++.-++-..+ ....++++.+.. ++. .
T Consensus 55 w~li~~SflyGvlHAlgPGHgKa--viasylia~~--~~----lk~~ilLsf~~sllqG~~Av~l~~~~~~v~~~~s~~~ 126 (303)
T COG2215 55 WTLIPLSFLYGVLHALGPGHGKA--VIATYLIAHK--AT----LKRAILLSFLASLLQGLTAVVLLLAFLGVLRLSSITF 126 (303)
T ss_pred HHHHHHHHHHHHHhccCCCcchH--HHHHHHHhcc--cc----hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHH
Confidence 56777899999999998875421 2356765522 11 2222222221111 112222222211 222 2
Q ss_pred ccccCCccchhhhhHHHhhchhHHH--HHh--hcCCc--cC-------------------C--CChhhhhcCCChhHHHH
Q 023793 126 GQIGTGLPLAASGLAIVMGLNLLEI--IEL--QLPSF--FD-------------------N--FDPRAAAANFPSSVQAY 178 (277)
Q Consensus 126 ~~~~~~~~~~~g~l~il~GL~ll~~--~~~--~~p~~--~~-------------------~--~~~~~~~~~~~~~~~~f 178 (277)
.+...++.++..++++.+|+.++-. .+. +-|+. .. . .|++.. .+.......+
T Consensus 127 ~~s~~~lE~~S~~Ll~~~G~w~~~r~lr~l~~~~~~~~~~~~~~~~~~~h~H~~~~~Cgh~H~~d~~~~-~~~~~~~~~~ 205 (303)
T COG2215 127 ALSEPWLELISFLLLILLGLWLLWRTLRRLRHRHPKHPHFAAHPHPDHDHDHHYQCACGHAHAPDPKRL-GQAVDWKQQW 205 (303)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccccCCCcccCCccccccccccccCCChHHh-cccccHHHHH
Confidence 2344577889999999999998821 111 11220 00 0 011111 2223345668
Q ss_pred HhhhhhhhccCCCChHHHHHHHHHHhhcCCCcccceeeeeeecchhHHHHHHHHHHHHHHHH-Hhhc-------cccccc
Q 023793 179 LAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSL-LSFR-------KFSSWI 250 (277)
Q Consensus 179 llG~~~gl~~~PC~~p~l~~iL~~a~~~g~~~~G~~ll~~fglG~~lPlll~~~~~~~l~~~-~~~~-------~~~~~i 250 (277)
..|+..|+ .||++.+.. +..+-+-+....|++.-+++++|+.+++-..+...-..|+. .|.. |+.+.+
T Consensus 206 ~~~l~~GL--rPCpgAi~V--Llfal~~gl~~~Gil~VlamS~GtalTvs~lA~~av~ak~~a~~~~g~~~~~~~~~~~~ 281 (303)
T COG2215 206 LFGLTGGL--RPCPGAIFV--LLFALSLGLYTLGILSVLAMSIGTALTVSALALLAVTAKNTAVRLSGFRTLAKRISYIV 281 (303)
T ss_pred HHHHHhcC--ccCcHHHHH--HHHHHHhchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 88999997 999977743 44566667888999999999999999977766655444421 1111 223344
Q ss_pred ccccchhhhcCchhhhhh
Q 023793 251 NPMSGALLLGGGLYTFLD 268 (277)
Q Consensus 251 ~~i~G~lli~~Gi~~ll~ 268 (277)
+.+.|.+++.+|+..++.
T Consensus 282 ~l~~gli~l~~g~~~l~~ 299 (303)
T COG2215 282 SLLGGLIGLYFGLHLLLG 299 (303)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455677777777765554
No 10
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=96.73 E-value=0.00042 Score=59.40 Aligned_cols=164 Identities=21% Similarity=0.230 Sum_probs=88.9
Q ss_pred eecchhhhhhhHHHHHHHHhhhhhcccccc-c---cccCCccchhhhhHHHhhchhHHHHHhhcCCccCCCChhhhhcCC
Q 023793 96 IIGDSIAFSLGLATTLALLGVGASFAGKAY-G---QIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANF 171 (277)
Q Consensus 96 ~~~~~~~f~lG~~~ty~~LG~l~~~~G~~~-~---~~~~~~~~~~g~l~il~GL~ll~~~~~~~p~~~~~~~~~~~~~~~ 171 (277)
.++.++...+|..+.......++...-..+ + .....+.++.+..++.+|..++..-+ +. .+++....++
T Consensus 22 G~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~~----~~---~~~~~~~~~~ 94 (191)
T PF01810_consen 22 GFKAGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRSKF----SS---KSSTQSEAKK 94 (191)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhccc----Cc---chhhhhhhcc
Confidence 345678888898888887766655433333 2 22344566777777888877762111 00 0000000112
Q ss_pred ChhHHHHHhhhhhhhccCCCChHHHHHHHHHHhhcCCCccc-ceeeeeeecchhHHHHHHHHHHHHHHHHHhhccccccc
Q 023793 172 PSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIG-GTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWI 250 (277)
Q Consensus 172 ~~~~~~fllG~~~gl~~~PC~~p~l~~iL~~a~~~g~~~~G-~~ll~~fglG~~lPlll~~~~~~~l~~~~~~~~~~~~i 250 (277)
.+....|..|+...+ .-|=+-+...++........+.... ........++........+...++.++..+.++.+ ++
T Consensus 95 ~~~~~~f~~g~~~~~-~NPk~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~i 172 (191)
T PF01810_consen 95 QSKSKSFLTGFLLNL-LNPKAILFWLAVFPQFISPEYSSTQFLVFILGIFLGSLLWFLLLALLGSRLRRKFSSRRIR-WI 172 (191)
T ss_pred ccHHHHHHHHHHHHH-HhHHHHHHHHHhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HH
Confidence 456677888888876 2444433333443332221111111 22222334444444455555555554433333344 99
Q ss_pred ccccchhhhcCchhhhhh
Q 023793 251 NPMSGALLLGGGLYTFLD 268 (277)
Q Consensus 251 ~~i~G~lli~~Gi~~ll~ 268 (277)
++++|++++.+|++++++
T Consensus 173 ~~~~g~~li~~av~l~~~ 190 (191)
T PF01810_consen 173 NRISGLLLIGFAVYLLYS 190 (191)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999999998765
No 11
>COG0785 CcdA Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.0017 Score=57.75 Aligned_cols=90 Identities=26% Similarity=0.267 Sum_probs=64.4
Q ss_pred hhhHHhhcccccccc--CcceeeeeccccccccccCCCCccceeecchhhhhhhHHHHHHHHhhhhhcccc-c---cccc
Q 023793 55 TSLAVIFGAGLVTSL--SPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGK-A---YGQI 128 (277)
Q Consensus 55 ~~l~~~f~aGlltsl--sPC~l~~lp~~l~~i~~~~~~~~r~~~~~~~~~f~lG~~~ty~~LG~l~~~~G~-~---~~~~ 128 (277)
.+..-.|..|+..++ +||..|.+...++.... +++-.+....-..|++|..+.|..++...+.+.+ . +.++
T Consensus 124 ~~~~~~f~lGl~f~~~wtPC~gPil~sil~laa~---~~~~~~g~~ll~~Y~lGl~lP~~~~~~~~~~~~~~~~~~l~k~ 200 (220)
T COG0785 124 VTALGAFLLGLLFALGWTPCIGPILGSILALAAS---TGSVVLGALLLAAYALGLALPFLLLALLSGRALKAFSRKLRRH 200 (220)
T ss_pred CcchhHHHHHHHHHHHhccchhHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666654 69999887666655432 2222344566788999999999999998887766 2 3445
Q ss_pred cCCccchhhhhHHHhhchh
Q 023793 129 GTGLPLAASGLAIVMGLNL 147 (277)
Q Consensus 129 ~~~~~~~~g~l~il~GL~l 147 (277)
++.++++.|+++|++|+.+
T Consensus 201 ~~~i~~~~G~lli~~Gv~l 219 (220)
T COG0785 201 SGAIEIVGGALLILLGLLL 219 (220)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 6678999999999999865
No 12
>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation. DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=95.60 E-value=0.0023 Score=56.11 Aligned_cols=88 Identities=27% Similarity=0.288 Sum_probs=61.3
Q ss_pred HHhhcccccccc--CcceeeeeccccccccccCCCCccceeecchhhhhhhHHHHHHHHhhhhhccccc---cccccCCc
Q 023793 58 AVIFGAGLVTSL--SPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKA---YGQIGTGL 132 (277)
Q Consensus 58 ~~~f~aGlltsl--sPC~l~~lp~~l~~i~~~~~~~~r~~~~~~~~~f~lG~~~ty~~LG~l~~~~G~~---~~~~~~~~ 132 (277)
..+|..|+..++ +||+.|++-..+++...+ ++..+....-..|++|..+-+..++.......+. ..+..+++
T Consensus 118 ~gaf~lG~~~~l~~~PC~~p~l~~il~~a~~~---~~~~~~~~ll~~y~lG~~lPll~~~~~~~~~~~~~~~~~~~~~~i 194 (211)
T PF02683_consen 118 LGAFLLGLLFGLVWSPCTGPILAAILALAASS---GSVLQGLLLLLAYGLGFGLPLLLIGLFSGSLLRRLRKLRRWSRWI 194 (211)
T ss_pred ccHHHHHHHHHHHhhhcchHHHHHHHHHHHcC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555554433 599999877777765432 2222345556789999999999998887765533 33445678
Q ss_pred cchhhhhHHHhhchhH
Q 023793 133 PLAASGLAIVMGLNLL 148 (277)
Q Consensus 133 ~~~~g~l~il~GL~ll 148 (277)
+.+.|++++++|+.++
T Consensus 195 ~~~~G~lli~~g~~~l 210 (211)
T PF02683_consen 195 KRISGILLIALGLYLL 210 (211)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999999999998764
No 13
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=95.41 E-value=0.0031 Score=54.94 Aligned_cols=163 Identities=19% Similarity=0.136 Sum_probs=78.2
Q ss_pred ecchhhhhhhHHHHHHHHhhhhhc-ccccccc---ccCCccchhhhhHHHhhchhHHHHHhhcCCccCCCChhhhhcCCC
Q 023793 97 IGDSIAFSLGLATTLALLGVGASF-AGKAYGQ---IGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFP 172 (277)
Q Consensus 97 ~~~~~~f~lG~~~ty~~LG~l~~~-~G~~~~~---~~~~~~~~~g~l~il~GL~ll~~~~~~~p~~~~~~~~~~~~~~~~ 172 (277)
.+.+..+.+|..+.+...-.+... ++..+.+ ....++++.+.-++.+|..++.. + ++..+ ++ . .+.+
T Consensus 36 ~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~~~~~s---~-~~~~~--~~-~--~~~~ 106 (205)
T PRK10520 36 YRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGAAYLIWLGIQQWRA---A-GAIDL--HT-L--ASTQ 106 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC---C-Ccccc--cc-c--cCCc
Confidence 345778888888877766544432 2223322 22345566666677788877632 1 11100 00 0 0112
Q ss_pred hhHHHHHhhhhhhhccCCCChHHHHHHHHHHhhcCCCc-ccce-eeeeeecchhHHHHHHHHHHHHHHHHHhhccccccc
Q 023793 173 SSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPL-IGGT-LLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWI 250 (277)
Q Consensus 173 ~~~~~fllG~~~gl~~~PC~~p~l~~iL~~a~~~g~~~-~G~~-ll~~fglG~~lPlll~~~~~~~l~~~~~~~~~~~~i 250 (277)
+..+.|.-|+...+ .-|=+-.++.++.+.-...+++. .... +...+.+-...-....+...++.++..+.+|+.+++
T Consensus 107 ~~~~~f~~g~~~~l-~NPKailf~~a~~p~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~i 185 (205)
T PRK10520 107 SRRRLFKRAVFVNL-TNPKSIVFLAALFPQFIMPQQPQLMQYLVLGVTTVVVDIIVMIGYATLAQRIARWIKGPKQMKAL 185 (205)
T ss_pred cHHHHHHHHHHHHh-hCcHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 22345777777776 24443223333333222111111 1101 111111100011112222334444444555677899
Q ss_pred ccccchhhhcCchhhhhhh
Q 023793 251 NPMSGALLLGGGLYTFLDR 269 (277)
Q Consensus 251 ~~i~G~lli~~Gi~~ll~~ 269 (277)
++++|.+++.+|+++.++|
T Consensus 186 ~~~~g~~li~~~~~l~~~~ 204 (205)
T PRK10520 186 NKIFGSLFMLVGALLASAR 204 (205)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 9999999999999877765
No 14
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=94.94 E-value=0.011 Score=59.74 Aligned_cols=91 Identities=20% Similarity=0.224 Sum_probs=63.3
Q ss_pred hHHHHHhhhhhhhccCCCChHHHHHHHHHHhhcC---CCcccceeeeeeecchhHHHHHHHHHHHHHHHHHhhccccccc
Q 023793 174 SVQAYLAGLTFALAASPCSTPVLATLLGYVATSK---DPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWI 250 (277)
Q Consensus 174 ~~~~fllG~~~gl~~~PC~~p~l~~iL~~a~~~g---~~~~G~~ll~~fglG~~lPlll~~~~~~~l~~~~~~~~~~~~i 250 (277)
...+|+.|++..+ +||..|++-....+....+ +...+...-++|.+|+.+-+.++|...+.+.........++|+
T Consensus 169 l~~afl~Glll~l--~PCvlP~lpi~~~~~~~~~~~~~~~~~~~~~l~y~lG~~~ty~~lG~~a~~~G~~~~~~~q~~~~ 246 (571)
T PRK00293 169 LLWFFLIGIGLAF--TPCVLPMYPILSGIVLGGKQRLSTARALLLSFVYVQGMALTYTLLGLVVAAAGLQFQAALQHPYV 246 (571)
T ss_pred HHHHHHHHHHHhc--cchhhHhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4668889988876 9999998765555554322 2334456678999999999888887776654222111235688
Q ss_pred ccccchhhhcCchhhh
Q 023793 251 NPMSGALLLGGGLYTF 266 (277)
Q Consensus 251 ~~i~G~lli~~Gi~~l 266 (277)
..+.+++++++|+.++
T Consensus 247 ~~~~~~l~v~lgL~~~ 262 (571)
T PRK00293 247 LIGLSILFVLLALSMF 262 (571)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8888999999888653
No 15
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=94.76 E-value=0.0071 Score=53.16 Aligned_cols=131 Identities=24% Similarity=0.252 Sum_probs=63.9
Q ss_pred CCccchhhhhHHHhhchhHHHHHhhcCCccCCCChhhhhcCCChhHHHHHhhhhhhhccCCCChHHHHHHHHHHhhcCCC
Q 023793 130 TGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDP 209 (277)
Q Consensus 130 ~~~~~~~g~l~il~GL~ll~~~~~~~p~~~~~~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~iL~~a~~~g~~ 209 (277)
+.+.++.+.-++-+|..++..- -+.. + ++...+.+..+ .+.|.-|++..+ .-|=.--.+.+++......+..
T Consensus 73 ~~lk~~GaaYL~ylg~~~~ra~---~~~~--~-~~~~~~~~~~~-~~~f~~G~~~~l-~NPK~~lf~la~~pqfv~~~~~ 144 (208)
T COG1280 73 TVLKLAGAAYLLYLGWKALRAG---GAAL--A-EEAAGAPSSSR-RKAFRRGLLVNL-LNPKAILFFLAFLPQFVDPGAG 144 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc---cccc--c-ccccccccchh-HHHHHHHHHHHh-hCcHHHHHHHHHHhhhcCCCCc
Confidence 3456666666777787766221 0110 0 11100011111 367888888887 3555433444555544432222
Q ss_pred cccceeeeeeecchh---HHHHH-HHHHHHHHHHHHhhcccccccccccchhhhcCchhhhhhh
Q 023793 210 LIGGTLLLSYTTGYV---APLLL-AASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDR 269 (277)
Q Consensus 210 ~~G~~ll~~fglG~~---lPlll-~~~~~~~l~~~~~~~~~~~~i~~i~G~lli~~Gi~~ll~~ 269 (277)
.. ...+...++.+. .+... ........++..|.++..+|+++..|.+++..|++....+
T Consensus 145 ~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~G~~li~~g~~l~~~~ 207 (208)
T COG1280 145 LV-LLQALILGLVFILVGFVVLALYALLAARLRRLLRRPRASRIINRLFGVLLIGFGVKLALSR 207 (208)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 21 111111222221 11111 1122223333322267899999999999999999987654
No 16
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=93.01 E-value=0.059 Score=48.12 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=17.6
Q ss_pred ccccchhhhcCchhhhhhhcc-cc
Q 023793 251 NPMSGALLLGGGLYTFLDRLF-PT 273 (277)
Q Consensus 251 ~~i~G~lli~~Gi~~ll~~~~-~~ 273 (277)
....|-.|+..|+|++++.++ |+
T Consensus 160 p~~LG~~Mi~~GlyfLl~aliiPn 183 (224)
T PF09930_consen 160 PIILGNFMIFLGLYFLLSALIIPN 183 (224)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhh
Confidence 347899999999999865543 65
No 17
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=92.68 E-value=0.04 Score=46.95 Aligned_cols=159 Identities=15% Similarity=0.174 Sum_probs=77.1
Q ss_pred ecchhhhhhhHHHHHHHHhhhhhc-ccccccc---ccCCccchhhhhHHHhhchhHHHHHhhcCCccCCCChhhhhcCCC
Q 023793 97 IGDSIAFSLGLATTLALLGVGASF-AGKAYGQ---IGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFP 172 (277)
Q Consensus 97 ~~~~~~f~lG~~~ty~~LG~l~~~-~G~~~~~---~~~~~~~~~g~l~il~GL~ll~~~~~~~p~~~~~~~~~~~~~~~~ 172 (277)
.++++.+.+|..+.....-.+... ++..+.. ....++++.+..++.+|..++.. +.+.. +..+++. ..+++
T Consensus 18 ~~~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~~---~~~~~-~~~~~~~-~~~~~ 92 (185)
T TIGR00949 18 RRAGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLRK---KSKKQ-SPAAQVE-LAEQT 92 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHc---ccccc-ccccccc-cccCc
Confidence 455778888888877776555443 3334432 23455667777778888877631 11100 0000000 01112
Q ss_pred hhHHHHHhhhhhhhccCCCChHHHHHHHHHHhhcCCCcccceeeeeeecchh----HHHHHHHHHHHHHHHHHhhccccc
Q 023793 173 SSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYV----APLLLAASFAGALQSLLSFRKFSS 248 (277)
Q Consensus 173 ~~~~~fllG~~~gl~~~PC~~p~l~~iL~~a~~~g~~~~G~~ll~~fglG~~----lPlll~~~~~~~l~~~~~~~~~~~ 248 (277)
+..+.|.-|+...+ .-|=+-..+.++...-...+.. ......+..+.. .-....+....+.++.++.+|+.+
T Consensus 93 ~~~~~f~~g~~~~~-~NPk~ilf~~~i~~~f~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (185)
T TIGR00949 93 TWKKSFRRGLLTNL-SNPKAVLFFISIFSQFINPNTP---TWQLIVLGLTIIVETILWFYVLSLIFSRPAVRRKYSKQQK 168 (185)
T ss_pred cHHHHHHHHHHHhc-cChHHHHHHHHHHHHHhCCCCc---hHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 23456888887775 2443322222333221111111 111122233321 111222222233333334557889
Q ss_pred ccccccchhhhcCchh
Q 023793 249 WINPMSGALLLGGGLY 264 (277)
Q Consensus 249 ~i~~i~G~lli~~Gi~ 264 (277)
++|+++|++++.+|+.
T Consensus 169 ~in~~~g~~l~~~~v~ 184 (185)
T TIGR00949 169 WIDGITGALFVGFGIR 184 (185)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999888864
No 18
>PRK09304 arginine exporter protein; Provisional
Probab=92.66 E-value=0.076 Score=46.41 Aligned_cols=162 Identities=14% Similarity=0.034 Sum_probs=76.2
Q ss_pred hhhhhhhHHHHHHHHhhhhhc-cccccccc---cCCccchhhhhHHHhhchhHHHHHhhcCCccCCCChhhhhcCCChhH
Q 023793 100 SIAFSLGLATTLALLGVGASF-AGKAYGQI---GTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSV 175 (277)
Q Consensus 100 ~~~f~lG~~~ty~~LG~l~~~-~G~~~~~~---~~~~~~~~g~l~il~GL~ll~~~~~~~p~~~~~~~~~~~~~~~~~~~ 175 (277)
++....|..+.......+... ++..+.+. ...+.++.+.-++.+|..++..-+ + ++. + .+++. .+.++..
T Consensus 36 ~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l~~~Ga~YLlyLg~~~~rs~~-~-~~~-~-~~~~~--~~~~~~~ 109 (207)
T PRK09304 36 HLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGGVAFLLWYGFGAFKTAM-S-SNI-E-LASAE--VMKQGRW 109 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c-ccc-c-ccccc--ccCccHH
Confidence 566777777666655444322 22333332 233455555666778887763210 0 110 0 00000 1112334
Q ss_pred HHHHhhhhhhhccCCCChHHHH--HHHHHHhhcCCCcccc-eeeeeeecchhHHHHHHHHHHHHHHHHHhhccccccccc
Q 023793 176 QAYLAGLTFALAASPCSTPVLA--TLLGYVATSKDPLIGG-TLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINP 252 (277)
Q Consensus 176 ~~fllG~~~gl~~~PC~~p~l~--~iL~~a~~~g~~~~G~-~ll~~fglG~~lPlll~~~~~~~l~~~~~~~~~~~~i~~ 252 (277)
+.|.-|+...+ .-|=+ +++ ++......+.++.... ..+... .....-....+....+.++..+.+|+.+|+|+
T Consensus 110 ~~f~~G~~~~l-~NPKa--~lf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~in~ 185 (207)
T PRK09304 110 KIIATMLAVTW-LNPHV--YLDTFVVLGSLGGQLDVEPKRWFALGTI-SASFLWFFGLALLAAWLAPRLRTAKAQRIINL 185 (207)
T ss_pred HHHHHHHHHHH-hCcHH--HHHHHHHHHHHHhccCcchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 56888888876 24443 322 2221111111221111 011110 01111111222333444444444567889999
Q ss_pred ccchhhhcCchhhhhhhcc
Q 023793 253 MSGALLLGGGLYTFLDRLF 271 (277)
Q Consensus 253 i~G~lli~~Gi~~ll~~~~ 271 (277)
++|++++.+|++...+++.
T Consensus 186 ~~g~~l~~~~~~l~~~~~~ 204 (207)
T PRK09304 186 FVGCVMWFIALQLARQGIA 204 (207)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 9999999999998777653
No 19
>PRK10958 leucine export protein LeuE; Provisional
Probab=92.61 E-value=0.027 Score=49.53 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=21.3
Q ss_pred hhcccccccccccchhhhcCchhhhhh
Q 023793 242 SFRKFSSWINPMSGALLLGGGLYTFLD 268 (277)
Q Consensus 242 ~~~~~~~~i~~i~G~lli~~Gi~~ll~ 268 (277)
+.+|+.+|+++++|.+++.+|+.+.++
T Consensus 184 ~~~~~~~~i~~~~g~~l~~~~i~l~~~ 210 (212)
T PRK10958 184 RRKKLAAGGNSLVGLLFVGFAAKLATA 210 (212)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345567899999999999999886543
No 20
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=92.35 E-value=0.02 Score=50.35 Aligned_cols=79 Identities=16% Similarity=0.289 Sum_probs=52.0
Q ss_pred ccccccCcceeeeeccccccccccCCCCccceeecchhhhhhhHHHHHHHHhhhhhccccccccccCCccchhhhhHHHh
Q 023793 64 GLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVM 143 (277)
Q Consensus 64 GlltslsPC~l~~lp~~l~~i~~~~~~~~r~~~~~~~~~f~lG~~~ty~~LG~l~~~~G~~~~~~~~~~~~~~g~l~il~ 143 (277)
.+..-++| +..+|.+++...+.+ .++|++..++...++....+.+...|-..- +.++-..+.+++..|+++.++
T Consensus 10 ~lf~iinP--~g~ip~f~~lt~~~~-~~~r~~ia~~a~~~a~~ill~f~~~G~~iL---~~fgIsl~af~IaGGiiL~~i 83 (203)
T PF01914_consen 10 TLFAIINP--IGNIPIFLSLTKGMS-PKERRRIARRASIIAFIILLIFAFFGQLIL---NFFGISLPAFRIAGGIILFLI 83 (203)
T ss_pred HHHHHHhH--HHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCHHHHHHHHHHHHHHH
Confidence 34444554 345677777655433 455667777888888888888887773332 233322345789999999999
Q ss_pred hchhH
Q 023793 144 GLNLL 148 (277)
Q Consensus 144 GL~ll 148 (277)
|+.|+
T Consensus 84 a~~ml 88 (203)
T PF01914_consen 84 ALEML 88 (203)
T ss_pred HHHHh
Confidence 99988
No 21
>PRK10995 inner membrane protein; Provisional
Probab=92.17 E-value=0.015 Score=51.63 Aligned_cols=81 Identities=19% Similarity=0.258 Sum_probs=53.3
Q ss_pred ccccccccCcceeeeeccccccccccCCCCccceeecchhhhhhhHHHHHHHHhhhhhccccccccccCCccchhhhhHH
Q 023793 62 GAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAI 141 (277)
Q Consensus 62 ~aGlltslsPC~l~~lp~~l~~i~~~~~~~~r~~~~~~~~~f~lG~~~ty~~LG~l~~~~G~~~~~~~~~~~~~~g~l~i 141 (277)
..++..-.+| +..+|++++...+.+ .++|++..++...+.....+.+...|-..- +.++...+.+++..|+++.
T Consensus 12 ~~~lf~iinP--~g~~pif~~lt~~~~-~~~r~~ia~~~~~~a~~ill~f~~~G~~il---~~fgIs~~a~rIaGGilL~ 85 (221)
T PRK10995 12 LVVLLPLANP--LTTVALFLGLSGNMT-PEERNRQALMASVYVFAIMMVAFYAGQLVM---STFGISIPGLRIAGGLIVA 85 (221)
T ss_pred HHHHHHHhch--hhhHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCCHHHHHHHHHHHHH
Confidence 3355556655 456788888765433 345666667777777777777766664332 3333333467899999999
Q ss_pred HhhchhH
Q 023793 142 VMGLNLL 148 (277)
Q Consensus 142 l~GL~ll 148 (277)
.+|+.|+
T Consensus 86 ~igi~ml 92 (221)
T PRK10995 86 FIGFRML 92 (221)
T ss_pred HHHHHHh
Confidence 9999997
No 22
>PRK11111 hypothetical protein; Provisional
Probab=89.61 E-value=0.049 Score=48.27 Aligned_cols=79 Identities=14% Similarity=0.204 Sum_probs=53.0
Q ss_pred cccccccCcceeeeeccccccccccCCCCccceeecchhhhhhhHHHHHHHHhh-hhhccccccccccCCccchhhhhHH
Q 023793 63 AGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGV-GASFAGKAYGQIGTGLPLAASGLAI 141 (277)
Q Consensus 63 aGlltslsPC~l~~lp~~l~~i~~~~~~~~r~~~~~~~~~f~lG~~~ty~~LG~-l~~~~G~~~~~~~~~~~~~~g~l~i 141 (277)
..+..-++| +..+|++++...+.+ .++|++..+++..+.....+.|...|- +..++|-.. ..+++..|+++.
T Consensus 15 ~~Lf~iinP--ig~ipiflslt~~~s-~~~r~~ia~~a~l~a~~ill~f~~~G~~iL~~fGIsl----~afrIaGGiiL~ 87 (214)
T PRK11111 15 IGLFALVNP--VGILPVFISMTSHQT-AAERNKTNLTANLSVAIILLISLFLGDFILNLFGISI----DSFRIAGGILVV 87 (214)
T ss_pred HHHHHHhCc--chhHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH----HHHHHHHHHHHH
Confidence 355556655 456788888765443 345666677777777777777777773 232333332 357889999999
Q ss_pred HhhchhH
Q 023793 142 VMGLNLL 148 (277)
Q Consensus 142 l~GL~ll 148 (277)
.+|+.|+
T Consensus 88 ~ial~Ml 94 (214)
T PRK11111 88 TIAMSMI 94 (214)
T ss_pred HHHHHHh
Confidence 9999997
No 23
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=89.50 E-value=0.07 Score=46.82 Aligned_cols=79 Identities=15% Similarity=0.275 Sum_probs=53.2
Q ss_pred ccccccCcceeeeeccccccccccCCCCccceeecchhhhhhhHHHHHHHHhhhhhccccccccccCCccchhhhhHHHh
Q 023793 64 GLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVM 143 (277)
Q Consensus 64 GlltslsPC~l~~lp~~l~~i~~~~~~~~r~~~~~~~~~f~lG~~~ty~~LG~l~~~~G~~~~~~~~~~~~~~g~l~il~ 143 (277)
.+..-++| +..+|++++...+.+ .++|++..++...+.....+.|...|-..- +.++-..+.+++..|+++...
T Consensus 13 ~Lf~iinP--ig~ipvfl~lt~~~~-~~~r~~ia~~~~l~a~~ill~f~~~G~~iL---~~fgIsl~afrIaGGiiL~~i 86 (201)
T TIGR00427 13 SLFAIINP--IGNIPIFISLTEYYT-AAERNKIAKKANISSFIILLIFLVFGDTIL---KLFGISIDAFRIAGGILLFTI 86 (201)
T ss_pred HHHHHhCc--chHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCHHHHHHHHHHHHHHH
Confidence 44455555 456788888765433 345666677787888888888888774322 333322345789999999999
Q ss_pred hchhH
Q 023793 144 GLNLL 148 (277)
Q Consensus 144 GL~ll 148 (277)
|+.|+
T Consensus 87 a~~ml 91 (201)
T TIGR00427 87 AMDML 91 (201)
T ss_pred HHHHh
Confidence 99997
No 24
>PRK10229 threonine efflux system; Provisional
Probab=89.39 E-value=0.11 Score=45.06 Aligned_cols=164 Identities=15% Similarity=0.210 Sum_probs=76.3
Q ss_pred ecchhhhhhhHHHHHHHHhhhhhc-ccccccc---ccCCccchhhhhHHHhhchhHHHHHhhcCCccCCCChhhhhcCCC
Q 023793 97 IGDSIAFSLGLATTLALLGVGASF-AGKAYGQ---IGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFP 172 (277)
Q Consensus 97 ~~~~~~f~lG~~~ty~~LG~l~~~-~G~~~~~---~~~~~~~~~g~l~il~GL~ll~~~~~~~p~~~~~~~~~~~~~~~~ 172 (277)
.+.++...+|..........++.. ++..+.+ ..+.++++.+..++.+|..++..-+ +..+..++.. ..+.+
T Consensus 35 ~~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~~Ga~yLlylg~~~~~~~~----~~~~~~~~~~-~~~~~ 109 (206)
T PRK10229 35 RKEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMVGGGLYLCWMGYQMLRGAL----KKEDVAAEEP-QVELA 109 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcc----cccccccccc-cccCc
Confidence 445777888888776665444322 2233332 2234555555666778877763210 0000000000 00112
Q ss_pred hhHHHHHhhhhhhhccCCCChHHHHHHHHHHhhcCCCcccceeeeeeecchhH-HHHHHHHHHHHHH--HH-Hhhccccc
Q 023793 173 SSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVA-PLLLAASFAGALQ--SL-LSFRKFSS 248 (277)
Q Consensus 173 ~~~~~fllG~~~gl~~~PC~~p~l~~iL~~a~~~g~~~~G~~ll~~fglG~~l-Plll~~~~~~~l~--~~-~~~~~~~~ 248 (277)
+..+.|.-|+...+ .-|=+-..+.+++..-... +. +......+..+... -............ .. +..+|+.+
T Consensus 110 ~~~~~f~~G~l~~l-~NPka~lf~~ai~~~f~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (206)
T PRK10229 110 KSGRSFLKGLLTNL-SNPKAIIYFGSVFSLFVGD-NV--GAGARWGLFALIIVETLAWFTVVASLFALPQMRRGYQRLAK 185 (206)
T ss_pred cHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHcCC-CC--cHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 22356888888876 2555433444444422211 11 11111122222111 1111111111111 11 12346778
Q ss_pred ccccccchhhhcCchhhhhhh
Q 023793 249 WINPMSGALLLGGGLYTFLDR 269 (277)
Q Consensus 249 ~i~~i~G~lli~~Gi~~ll~~ 269 (277)
|+++++|++++.+|++.+++|
T Consensus 186 ~in~~~g~~li~~~i~l~~~~ 206 (206)
T PRK10229 186 WIDGFAGALFAGFGIHLIISR 206 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999887654
No 25
>PF09948 DUF2182: Predicted metal-binding integral membrane protein (DUF2182); InterPro: IPR018688 This family of various hypothetical bacterial membrane proteins having predicted metal-binding properties has no known function.
Probab=86.98 E-value=0.12 Score=44.99 Aligned_cols=143 Identities=15% Similarity=0.155 Sum_probs=89.9
Q ss_pred eecchhhhhhhHHHHHHHHhhhhhcccccccccc-------CCccchhhhhHHHhhchhHHHHHh------hcCCccCCC
Q 023793 96 IIGDSIAFSLGLATTLALLGVGASFAGKAYGQIG-------TGLPLAASGLAIVMGLNLLEIIEL------QLPSFFDNF 162 (277)
Q Consensus 96 ~~~~~~~f~lG~~~ty~~LG~l~~~~G~~~~~~~-------~~~~~~~g~l~il~GL~ll~~~~~------~~p~~~~~~ 162 (277)
.......|..|-..+-...|+.+..+...+++.. +.-+++.+.++++.|++++.-.|- +-|....
T Consensus 35 ~~~~~~~f~~GYl~vW~~~g~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~Ll~AG~yQ~sp~K~~cL~~Cr~p~~f~-- 112 (191)
T PF09948_consen 35 RARSTALFVAGYLAVWLAFGLVATALQWALHQLALLSPMMASASPWLAGAVLLAAGLYQFSPLKQACLNHCRSPLSFL-- 112 (191)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhhhhhHHHHHHHHHHHHHhccHHHHHHHHHCCCcchHh--
Confidence 3556788999999999999998877765554211 123567788889999998855432 2222110
Q ss_pred ChhhhhcCCChhHHHHHhhhhhhhccCCCChHHHHHHHHHHhhcCCCcccceeeeeeecchhHHHHHHHHHHHHHHHHHh
Q 023793 163 DPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLS 242 (277)
Q Consensus 163 ~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~iL~~a~~~g~~~~G~~ll~~fglG~~lPlll~~~~~~~l~~~~~ 242 (277)
. +.-+++..+++-+|+-.|+.-..|+-+.....+ +. |.....-+..++.+. ..+ |
T Consensus 113 ~----~~wr~g~~~alr~Gl~hG~~CvGCCWaLMllmf--v~---------------G~mnl~wMa~lt~~~-~~E---K 167 (191)
T PF09948_consen 113 A----FHWRAGARGALRMGLRHGLYCVGCCWALMLLMF--VV---------------GVMNLAWMAALTALM-FAE---K 167 (191)
T ss_pred h----cCCCcccchHHHHHHHHccHHHHHHHHHHHHHH--Hh---------------ccccHHHHHHHHHHH-HHH---H
Confidence 0 112345678999999999988888855543222 22 223222233332211 122 3
Q ss_pred hcccccccccccchhhhcCchhh
Q 023793 243 FRKFSSWINPMSGALLLGGGLYT 265 (277)
Q Consensus 243 ~~~~~~~i~~i~G~lli~~Gi~~ 265 (277)
...+++++.+..|+.+++.|+..
T Consensus 168 ~~p~g~~l~r~~G~~l~~~g~~l 190 (191)
T PF09948_consen 168 LLPWGRRLSRAVGVALIVWGVLL 190 (191)
T ss_pred hCCcchHHHHHHHHHHHHHHHHH
Confidence 46678899999999999988764
No 26
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=85.91 E-value=0.16 Score=44.75 Aligned_cols=76 Identities=18% Similarity=0.309 Sum_probs=51.8
Q ss_pred cccCcceeeeeccccccccccCCCCccceeecchhhhhhhHHHHHHHHhhhhhccccccccccCCccchhhhhHHHhhch
Q 023793 67 TSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLN 146 (277)
Q Consensus 67 tslsPC~l~~lp~~l~~i~~~~~~~~r~~~~~~~~~f~lG~~~ty~~LG~l~~~~G~~~~~~~~~~~~~~g~l~il~GL~ 146 (277)
...+|= .-+|.+++.....+ .++|++..++...|.+.....|...|-..- +.++-....+++..|+++..+|+.
T Consensus 16 ~i~dP~--G~ipvf~slt~~~~-~~~r~~v~~ra~i~a~~ill~f~~~G~~il---~~fgIsi~a~rIAGGilLf~ia~~ 89 (203)
T COG2095 16 AIIDPI--GNLPVFISLTKGLS-PEERNRVALRASIIALLILLVFLLLGEGIL---RFFGISIDAFRIAGGILLFLIALR 89 (203)
T ss_pred HHhCCC--chhHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCchhHHHHhhhHHHHHHHHH
Confidence 334553 23566666554433 356777788888999999998888885443 233322345789999999999999
Q ss_pred hH
Q 023793 147 LL 148 (277)
Q Consensus 147 ll 148 (277)
++
T Consensus 90 ml 91 (203)
T COG2095 90 ML 91 (203)
T ss_pred Hh
Confidence 98
No 27
>PF03824 NicO: High-affinity nickel-transport protein; InterPro: IPR011541 High affinity nickel transporters are involved in the incorporation of nickel into H2-uptake hydrogenase [, ] and urease [] enzymes and are essential for the expression of catalytically active hydrogenase and urease. Ion uptake is dependent on proton motive force. HoxN in Ralstonia eutropha (Alcaligenes eutrophus) is thought to be an integral membrane protein with seven transmembrane helices []. The family also includes a cobalt transporter. ; GO: 0046872 metal ion binding, 0030001 metal ion transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=85.45 E-value=0.44 Score=43.60 Aligned_cols=65 Identities=18% Similarity=0.229 Sum_probs=45.7
Q ss_pred hhhHHhhccccccccCcceeeeeccccccccccCCCCccceeecchhhhhhhHHHHHHHHhhhhhcccccccc
Q 023793 55 TSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ 127 (277)
Q Consensus 55 ~~l~~~f~aGlltslsPC~l~~lp~~l~~i~~~~~~~~r~~~~~~~~~f~lG~~~ty~~LG~l~~~~G~~~~~ 127 (277)
..+.++|+.|+.=++.|=-.-.+ +.+|... +++..++++.+.+|-.++-...++++..+...+.+
T Consensus 3 ~ll~laf~~G~~HAl~PgH~kai--~~~~~~~------~~~~~~~g~~~~lg~s~~~~~~ai~lv~~~~~~~~ 67 (282)
T PF03824_consen 3 SLLLLAFLYGLLHALGPGHGKAI--IASYLLS------SRRALRVGLFFGLGHSLTHGLSAILLVLLALWLSE 67 (282)
T ss_pred HHHHHHHHHHHHHccCCChHHHH--HHHHHhh------cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35668899999999988765543 4455432 22346778999999999888888887766655543
No 28
>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region
Probab=85.04 E-value=0.13 Score=44.65 Aligned_cols=82 Identities=24% Similarity=0.183 Sum_probs=54.3
Q ss_pred hhHHhhccccccccCcceeeeeccccccccccCCCCccceeecchhhhhhhHHHHHHHHhhhhhccccccccccCCccch
Q 023793 56 SLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLA 135 (277)
Q Consensus 56 ~l~~~f~aGlltslsPC~l~~lp~~l~~i~~~~~~~~r~~~~~~~~~f~lG~~~ty~~LG~l~~~~G~~~~~~~~~~~~~ 135 (277)
.....|..|++.++.||. ++......... +.+-.+....-..|.+|.......+|.....+++... +.+..+
T Consensus 117 ~~~~~~~lG~l~gllPCg-~~y~~l~~A~~----s~s~~~G~l~m~~FgLGT~p~ll~~~~~~~~l~~~~~---~~~~r~ 188 (199)
T PF13386_consen 117 GPWGAFLLGFLNGLLPCG-PVYFALALAAA----SGSPLYGALLMLAFGLGTLPALLLAGLLAGKLSRRLR---RRLLRL 188 (199)
T ss_pred CccHHHHHHHHHHHhHHH-HHHHHHHHHHH----cCChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 445678889999999996 33333221111 2233344566778999998888888888877666543 233447
Q ss_pred hhhhHHHhhc
Q 023793 136 ASGLAIVMGL 145 (277)
Q Consensus 136 ~g~l~il~GL 145 (277)
.+.+++++|+
T Consensus 189 ~g~~~i~~G~ 198 (199)
T PF13386_consen 189 AGVLLIILGI 198 (199)
T ss_pred HHHHHHHHHH
Confidence 8888888875
No 29
>TIGR00948 2a75 L-lysine exporter.
Probab=80.47 E-value=0.95 Score=38.30 Aligned_cols=147 Identities=15% Similarity=0.073 Sum_probs=66.9
Q ss_pred hhhhhhhHHHHHHHHhhhhhcc-cccccc---ccCCccchhhhhHHHhhchhHHHHHhhcCCccCCCChhhhhcCCChhH
Q 023793 100 SIAFSLGLATTLALLGVGASFA-GKAYGQ---IGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSV 175 (277)
Q Consensus 100 ~~~f~lG~~~ty~~LG~l~~~~-G~~~~~---~~~~~~~~~g~l~il~GL~ll~~~~~~~p~~~~~~~~~~~~~~~~~~~ 175 (277)
++...+|..+.....-.+.... +..+.. ..+.+.++.+..++.+|..++..-+ +.+. + .+.. ..+.++..
T Consensus 22 g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~~~-~~~~--~-~~~~--~~~~~~~~ 95 (177)
T TIGR00948 22 VLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKTAW-RGPG--A-LVPD--EPKKMGLK 95 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccc--c-cccc--cccccCHH
Confidence 6777888887666665444322 223332 2334566666667788887763211 1000 0 0000 01112334
Q ss_pred HHHHhhhhhhhccCCCChHHHHHHHHHHhhcCCCcccceeeeeeecchhH-HHHH---HHHHHHHHHHHHhhcccccccc
Q 023793 176 QAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVA-PLLL---AASFAGALQSLLSFRKFSSWIN 251 (277)
Q Consensus 176 ~~fllG~~~gl~~~PC~~p~l~~iL~~a~~~g~~~~G~~ll~~fglG~~l-Plll---~~~~~~~l~~~~~~~~~~~~i~ 251 (277)
+.|.-|+...+ .-|=+...+.++......+ ..... ...+.++... .++. .+...++.++..+.+|..+|++
T Consensus 96 ~~f~~G~~~~l-~NPKa~lf~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~i~ 170 (177)
T TIGR00948 96 KVLAMTLAVTL-LNPHVYLDTVVLIGALGLQ-FSDLL---RWLFAAGAIAASLVWFASLAFGAARLSPLLASPKVWRIIN 170 (177)
T ss_pred HHHHHHHHHHH-hCchHHHHHHHHHHhhhhc-cCcch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 56888888886 3555422221222211111 11111 1122332221 1111 2223333444444556778899
Q ss_pred cccchh
Q 023793 252 PMSGAL 257 (277)
Q Consensus 252 ~i~G~l 257 (277)
+++|++
T Consensus 171 ~~~g~~ 176 (177)
T TIGR00948 171 LVVAVV 176 (177)
T ss_pred HHHhhc
Confidence 988865
No 30
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=79.34 E-value=0.46 Score=41.12 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=19.0
Q ss_pred cccccccccccchhhhcCchhhh
Q 023793 244 RKFSSWINPMSGALLLGGGLYTF 266 (277)
Q Consensus 244 ~~~~~~i~~i~G~lli~~Gi~~l 266 (277)
+|+++|+++++|.+++.+|+.+.
T Consensus 172 ~~~~~~i~~~~g~~l~~~a~~l~ 194 (195)
T PRK10323 172 RQYGRQLNIVLALLLVYCAVRIF 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678999999999999988754
No 31
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=74.21 E-value=0.54 Score=43.36 Aligned_cols=83 Identities=27% Similarity=0.301 Sum_probs=54.3
Q ss_pred hccccccccCcceeeeeccccccccccCCCCccceeecchhhhhhhHHHHHHHHhhhhhcccc-cc---cccc---CCcc
Q 023793 61 FGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGK-AY---GQIG---TGLP 133 (277)
Q Consensus 61 f~aGlltslsPC~l~~lp~~l~~i~~~~~~~~r~~~~~~~~~f~lG~~~ty~~LG~l~~~~G~-~~---~~~~---~~~~ 133 (277)
+..|+..++-||..++.-+.++...+ .-...+...+.|.+|.++|.+.+|.+++...+ .. .... +..+
T Consensus 181 l~igl~~Gl~PCpgAl~VLL~a~~lg-----~~~~Gi~~vlafslGtaltm~~vgll~~~~~r~~~~~~~~~~~~~~~~p 255 (279)
T PRK10019 181 LLFGLTGGLIPCPAAITVLLICIQLK-----ALTLGATLVLSFSIGLALTLVTVGVGAAISVQQAAKRWSGFNTLARRAP 255 (279)
T ss_pred hHHHHHhccCCCHHHHHHHHHHHHhc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44566667789977765444444221 12234566888999999999999988753222 11 1122 3456
Q ss_pred chhhhhHHHhhchhH
Q 023793 134 LAASGLAIVMGLNLL 148 (277)
Q Consensus 134 ~~~g~l~il~GL~ll 148 (277)
++.+.+.+++|+.+.
T Consensus 256 ~~s~~l~i~~G~~~~ 270 (279)
T PRK10019 256 YFSSLLIGLVGVYMG 270 (279)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999876
No 32
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=68.13 E-value=2.3 Score=42.84 Aligned_cols=90 Identities=24% Similarity=0.263 Sum_probs=50.7
Q ss_pred ChhHHHHHhhhhhhhccCCCChHHHHHHHHHHhh---cCCCcccceeeeeeecchhHHHHHHHHHHHHHHHHHhhccccc
Q 023793 172 PSSVQAYLAGLTFALAASPCSTPVLATLLGYVAT---SKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSS 248 (277)
Q Consensus 172 ~~~~~~fllG~~~gl~~~PC~~p~l~~iL~~a~~---~g~~~~G~~ll~~fglG~~lPlll~~~~~~~l~~~~~~~~~~~ 248 (277)
.+..-+|+.|+...+ +||.-|++--....+.- +.+...+..+-++|+.|+.+-.-+++...+....--...-.++
T Consensus 168 ~~ll~afl~GLlL~f--tPCVLPmlpl~s~~v~g~~~~~s~~ra~~Ls~~yv~~mALay~~lgl~~~~~gl~~q~qLQ~P 245 (569)
T COG4232 168 WSLLLAFLGGLLLNF--TPCVLPMLPLLSGIVLGSAKRASKARAFGLSFVYVQGMALAYTLLGLVAAAAGLGWQAQLQQP 245 (569)
T ss_pred HHHHHHHHHHHHHhh--ccHhhhhHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhHhHccc
Confidence 446778888887775 99999986433322222 2456667777778888876666666554443220001111244
Q ss_pred ccccccchhhhcCch
Q 023793 249 WINPMSGALLLGGGL 263 (277)
Q Consensus 249 ~i~~i~G~lli~~Gi 263 (277)
|+--...++++++++
T Consensus 246 ~vl~~la~lf~llAL 260 (569)
T COG4232 246 WVLGGLAALFVLLAL 260 (569)
T ss_pred HHHHHHHHHHHHHHH
Confidence 554444455555443
No 33
>PRK10739 putative antibiotic transporter; Provisional
Probab=57.72 E-value=2 Score=37.53 Aligned_cols=79 Identities=13% Similarity=0.222 Sum_probs=50.9
Q ss_pred ccccccCcceeeeeccccccccccCCCCccceeecchhhhhhhHHHHHHHHhhhhhccccccccccCCccchhhhhHHHh
Q 023793 64 GLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVM 143 (277)
Q Consensus 64 GlltslsPC~l~~lp~~l~~i~~~~~~~~r~~~~~~~~~f~lG~~~ty~~LG~l~~~~G~~~~~~~~~~~~~~g~l~il~ 143 (277)
.+..-.+| +..+|++++...+.+ +++|++..++...+.......|...|-..- +.++-....+++..|+++..+
T Consensus 10 ~Lf~iinP--ig~ipiflslt~~~~-~~~r~~ia~~a~~~a~~ill~f~~~G~~iL---~~fGIsl~afrIAGGilL~~i 83 (197)
T PRK10739 10 LLILIMDP--LGNLPIFMSVLKHLE-PKRRRAIMIRELLIALLVMLVFLFAGEKIL---AFLNLRTETVSISGGIILFLI 83 (197)
T ss_pred HHHHHHhH--hhHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCHHHHHHHHHHHHHHH
Confidence 33444444 455788888765433 345666677777777777777777763222 223322245789999999999
Q ss_pred hchhH
Q 023793 144 GLNLL 148 (277)
Q Consensus 144 GL~ll 148 (277)
|+.|+
T Consensus 84 al~ml 88 (197)
T PRK10739 84 AIKMI 88 (197)
T ss_pred HHHHh
Confidence 99998
No 34
>TIGR00802 nico high-affinity nickel-transporter, HoxN/HupN/NixA family. This family is found in both Gram-negative and Gram-positive bacteria. The functionally characterized members of the family catalyze uptake of either Ni2+ or Co2+ in a proton motive force-dependent process. Topological analyses with the HoxN Ni2+ transporter of Ralstonia eutropha (Alcaligenes eutrophus) suggest that it possesses 8 TMSs with its N- and C-termini in the cytoplasm.
Probab=56.15 E-value=4.7 Score=37.12 Aligned_cols=98 Identities=21% Similarity=0.292 Sum_probs=51.6
Q ss_pred ccceeecchhhhhhhHHHHHHHHhhhhhcccccc-------ccccCCc-cchhhhhHHHhhchhH----HHHHh-h-cCC
Q 023793 92 SRAQIIGDSIAFSLGLATTLALLGVGASFAGKAY-------GQIGTGL-PLAASGLAIVMGLNLL----EIIEL-Q-LPS 157 (277)
Q Consensus 92 ~r~~~~~~~~~f~lG~~~ty~~LG~l~~~~G~~~-------~~~~~~~-~~~~g~l~il~GL~ll----~~~~~-~-~p~ 157 (277)
++++....+..|.+|=.++-.+..++.+.....+ ++++..+ ..+.+.+++++|+.-+ +..+. + ..+
T Consensus 31 ~~~~~~~~G~~fslGHs~vV~l~~l~ia~~~~~~~~~~~~~~~igg~iGt~VS~~FL~~ig~~Nl~iL~~~~~~~r~~r~ 110 (280)
T TIGR00802 31 QGRRPLGVGFFFSLGHSTVVVLATVLIAVASALLTERLDGLHEIGGLIGTLVSALFLLIIALLNLVILRNLLRLFRKVRR 110 (280)
T ss_pred cCCCceeeeeeecCccHHHHHHHHHHHHHHHHHHHhhchhHHhccceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3446678899999998877776655554333222 2222223 4566666666665433 22211 1 111
Q ss_pred cc---CC----CC-----hhh-h--hcCCChhHHHHHhhhhhhhccC
Q 023793 158 FF---DN----FD-----PRA-A--AANFPSSVQAYLAGLTFALAAS 189 (277)
Q Consensus 158 ~~---~~----~~-----~~~-~--~~~~~~~~~~fllG~~~gl~~~ 189 (277)
.. +. .+ .|. + .+..++++..|.+|++||+.+=
T Consensus 111 g~~~~~~l~~~l~~rG~~~Rll~~lf~~v~~pw~mypvG~LFGLGFD 157 (280)
T TIGR00802 111 GIYDEADLEALLGNRGLLTRLLGPLFRLVTKSWHMYPVGFLFGLGFD 157 (280)
T ss_pred cccchhhHHHhhhccCcHHHHHHHHHHHhcCchHHHHHHHHHHcccc
Confidence 00 00 00 000 0 0224667888999999998654
No 35
>COG5486 Predicted metal-binding integral membrane protein [Function unknown]
Probab=49.82 E-value=2.5 Score=38.16 Aligned_cols=169 Identities=20% Similarity=0.207 Sum_probs=98.0
Q ss_pred cCcceeeeeccccccccccCCCCccceeecchhhhhhhHHHHHHHHhhhhhcccccccc-------ccCCccchhhhhHH
Q 023793 69 LSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ-------IGTGLPLAASGLAI 141 (277)
Q Consensus 69 lsPC~l~~lp~~l~~i~~~~~~~~r~~~~~~~~~f~lG~~~ty~~LG~l~~~~G~~~~~-------~~~~~~~~~g~l~i 141 (277)
..|-..||+-.+-. +++. .+.|.+.+.....|..|-.+.....|.++..+-...+. ....-+++.|+.++
T Consensus 97 MlPsaaPmi~~ya~-i~r~--~~~~g~pva~t~~f~aGyl~vW~af~llat~l~~l~~a~al~~p~~s~~~~l~gg~~L~ 173 (283)
T COG5486 97 MLPSAAPMILLYAE-IGRT--AAIRGEPVAHTLVFVAGYLLVWAAFGLLATGLQWLLHAFALLGPILSPLSGLAGGLTLL 173 (283)
T ss_pred hCccccHHHHHHHH-HHHH--HHhcCCceeehHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccchhcchhhHHHHHHHH
Confidence 35777776533321 2221 23344567779999999999999999887654333321 12234667777889
Q ss_pred HhhchhHHHHHh------hcCCccCCCChhhhhcCCChhHHHHHhhhhhhhccCCCChHHHHHHHHHHhhcCCCccccee
Q 023793 142 VMGLNLLEIIEL------QLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTL 215 (277)
Q Consensus 142 l~GL~ll~~~~~------~~p~~~~~~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~iL~~a~~~g~~~~G~~l 215 (277)
+-|+++..-+|- |-|-.+ ...++ ..+.++.++|-+|+-=|+--.-|+=.+.. ++ .+
T Consensus 174 vAGlYQft~LK~~CL~qCrtPl~f--l~shw--~fr~~p~ga~~LGlrhGlyClGCCWALm~-ll-fv------------ 235 (283)
T COG5486 174 VAGLYQFTTLKHACLSQCRTPLSF--LFSHW--RFRAKPVGAFRLGLRHGLYCLGCCWALML-LL-FV------------ 235 (283)
T ss_pred HhhhhhhccHHHHHHHHccchHHH--HHHhc--CcccCcchhhhhccccccchHHHHHHHHH-HH-HH------------
Confidence 999998743321 222211 01111 12355688999999999887888733221 11 11
Q ss_pred eeeeecchhHHHHHHHHHHHHHHHHHhhcccccccccccchhhhcCchhh
Q 023793 216 LLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYT 265 (277)
Q Consensus 216 l~~fglG~~lPlll~~~~~~~l~~~~~~~~~~~~i~~i~G~lli~~Gi~~ 265 (277)
=|++...-+..++.+.- +.|...+++++.++.|.++...|.+.
T Consensus 236 ---~Gvmnl~Wma~ial~vl----iEK~~~~Gr~~srv~gall~a~gaw~ 278 (283)
T COG5486 236 ---VGVMNLLWMALIALLVL----IEKQTSPGRRLSRVAGALLAAAGAWL 278 (283)
T ss_pred ---HHHHHHHHHHHHHHHHH----HHhccCcccchHHHHHHHHHHHHHhh
Confidence 12333333333332211 12345678888889999999988774
No 36
>PRK11469 hypothetical protein; Provisional
Probab=48.74 E-value=12 Score=32.51 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=21.9
Q ss_pred ccccccccccchhhhcCchhhhhhhc
Q 023793 245 KFSSWINPMSGALLLGGGLYTFLDRL 270 (277)
Q Consensus 245 ~~~~~i~~i~G~lli~~Gi~~ll~~~ 270 (277)
+.++|.+.+.|+++++.|++.+++.+
T Consensus 161 ~~g~~a~~lgG~iLI~iGi~il~~h~ 186 (188)
T PRK11469 161 IIGKKAEILGGLVLIGIGVQILWTHF 186 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45677888999999999999888765
No 37
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=44.00 E-value=4.6 Score=37.54 Aligned_cols=84 Identities=25% Similarity=0.281 Sum_probs=53.0
Q ss_pred hhccccccccCcceeeeeccccccccccCCCCccceeecchhhhhhhHHHHHHHHhhhhhcccccc---cc-------cc
Q 023793 60 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAY---GQ-------IG 129 (277)
Q Consensus 60 ~f~aGlltslsPC~l~~lp~~l~~i~~~~~~~~r~~~~~~~~~f~lG~~~ty~~LG~l~~~~G~~~---~~-------~~ 129 (277)
.+..|+..++-||...+.-+.+++..+. -...+...+++++|.++|.+.++.++-.+-+.. .. ..
T Consensus 204 ~~~~~l~~GLrPCpgAi~VLlfal~~gl-----~~~Gil~VlamS~GtalTvs~lA~~av~ak~~a~~~~g~~~~~~~~~ 278 (303)
T COG2215 204 QWLFGLTGGLRPCPGAIFVLLFALSLGL-----YTLGILSVLAMSIGTALTVSALALLAVTAKNTAVRLSGFRTLAKRIS 278 (303)
T ss_pred HHHHHHHhcCccCcHHHHHHHHHHHhch-----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4455666667899998877777664321 112345677899999999887776665443221 11 11
Q ss_pred CCccchhhhhHHHhhchhH
Q 023793 130 TGLPLAASGLAIVMGLNLL 148 (277)
Q Consensus 130 ~~~~~~~g~l~il~GL~ll 148 (277)
....++.|.+++++|+.++
T Consensus 279 ~~~~l~~gli~l~~g~~~l 297 (303)
T COG2215 279 YIVSLLGGLIGLYFGLHLL 297 (303)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 2345677778888888876
No 38
>PRK13747 putative mercury resistance protein; Provisional
Probab=36.64 E-value=23 Score=26.17 Aligned_cols=30 Identities=30% Similarity=0.595 Sum_probs=21.2
Q ss_pred hHHHHHhhhhhhhccCCCChHHHHHHHHHHh
Q 023793 174 SVQAYLAGLTFALAASPCSTPVLATLLGYVA 204 (277)
Q Consensus 174 ~~~~fllG~~~gl~~~PC~~p~l~~iL~~a~ 204 (277)
....|+-|.+- +..|||--|+++.+++..+
T Consensus 14 ~~~~YlWg~lA-vLTCPCHLpiLa~lLAGTa 43 (78)
T PRK13747 14 PITGYLWGALA-VLTCPCHLPILAAVLAGTT 43 (78)
T ss_pred cchhhhhHHHH-HhcCcchHHHHHHHHccch
Confidence 45567777644 5679999999888875443
No 39
>COG2119 Predicted membrane protein [Function unknown]
Probab=35.20 E-value=2.2e+02 Score=24.81 Aligned_cols=148 Identities=19% Similarity=0.171 Sum_probs=71.3
Q ss_pred hhhHHHHHHHHhhhhhccccccccc--cCCccchhhhhHHHhhchhHHHHHhhcCCccCCCChhhhhcCCChhHHHHHhh
Q 023793 104 SLGLATTLALLGVGASFAGKAYGQI--GTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAG 181 (277)
Q Consensus 104 ~lG~~~ty~~LG~l~~~~G~~~~~~--~~~~~~~~g~l~il~GL~ll~~~~~~~p~~~~~~~~~~~~~~~~~~~~~fllG 181 (277)
..|.+......-.+++.+|+..... .++..+..+...+++|..++ .|.+..+.+.. ...++.-...+|.+=
T Consensus 37 ~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l------~edk~~~~e~~-~~~~~~~f~~tfi~~ 109 (190)
T COG2119 37 FAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWML------IEDKEDDEEAQ-AASPRGVFVTTFITF 109 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHh------ccccccccccc-ccccccHHHHHHHHH
Confidence 3456655555555566677776443 35678889999999999887 33332111110 001122222232221
Q ss_pred hhhhhccCCCChHHHHHHHHHHhhcCCCcccceeeeeeecchhHHHHHHHHHHHHHHHHHhhcccccccccccchhhhcC
Q 023793 182 LTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGG 261 (277)
Q Consensus 182 ~~~gl~~~PC~~p~l~~iL~~a~~~g~~~~G~~ll~~fglG~~lPlll~~~~~~~l~~~~~~~~~~~~i~~i~G~lli~~ 261 (277)
+ ++...==+.+ +.+++++..+++ .++ -.|+.+-+++.....-...+...-|-..+.+++++|++++.+
T Consensus 110 F---laE~GDKTQi--ATIaLaA~~~~~-~~V------~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~f 177 (190)
T COG2119 110 F---LAELGDKTQI--ATIALAADYHSP-WAV------FAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIF 177 (190)
T ss_pred H---HHHhccHHHH--HHHHHhhcCCCc-eee------ehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 1 1111111122 233445555543 222 123333333322211111111112223567888999999999
Q ss_pred chhhhhhhc
Q 023793 262 GLYTFLDRL 270 (277)
Q Consensus 262 Gi~~ll~~~ 270 (277)
|++.+++..
T Consensus 178 al~~~~~~~ 186 (190)
T COG2119 178 ALVLLWQVF 186 (190)
T ss_pred HHHHHHHHH
Confidence 988776543
No 40
>COG2836 Uncharacterized conserved protein [Function unknown]
Probab=34.10 E-value=13 Score=33.34 Aligned_cols=54 Identities=31% Similarity=0.381 Sum_probs=43.8
Q ss_pred ceeeeeeecchhHHHHHHHHHHHHHH-HHHhhcccccccccccchhhhcCchhhh
Q 023793 213 GTLLLSYTTGYVAPLLLAASFAGALQ-SLLSFRKFSSWINPMSGALLLGGGLYTF 266 (277)
Q Consensus 213 ~~ll~~fglG~~lPlll~~~~~~~l~-~~~~~~~~~~~i~~i~G~lli~~Gi~~l 266 (277)
....+.|++|..+-..+++...+.+. ...+....+++...+.|++++.+|+|.+
T Consensus 44 ~~~~~lyNlGRi~SYallG~i~G~lG~~l~~~~~~~~~l~i~ag~~li~lGL~l~ 98 (232)
T COG2836 44 LKLHLLYNLGRILSYALLGAILGALGVSLGQSAGLRGVLFIIAGALLIALGLYLL 98 (232)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66778999999999999888777654 3334557788899999999999999963
No 41
>PF05052 MerE: MerE protein; InterPro: IPR007746 The prokaryotic MerE (or URF-1) protein is part of the mercury resistance operon often located on plasmids or transposons [, ]. It has been suggested that MerE is a broad mercury transporter mediating transport across the bacterial membrane [].
Probab=29.93 E-value=35 Score=25.09 Aligned_cols=29 Identities=38% Similarity=0.687 Sum_probs=20.5
Q ss_pred hHHHHHhhhhhhhccCCCChHHHHHHHHHH
Q 023793 174 SVQAYLAGLTFALAASPCSTPVLATLLGYV 203 (277)
Q Consensus 174 ~~~~fllG~~~gl~~~PC~~p~l~~iL~~a 203 (277)
..+.|+-|.+.-+ .|||--|++..+++..
T Consensus 14 ~i~gy~Wg~lA~l-TCPCHLpil~~vLaGT 42 (75)
T PF05052_consen 14 PITGYLWGLLALL-TCPCHLPILAPVLAGT 42 (75)
T ss_pred cchhhhhHHHHHh-hCcchHHHHHHHHccc
Confidence 3556777766554 6999999988877543
No 42
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=25.28 E-value=57 Score=27.93 Aligned_cols=55 Identities=20% Similarity=0.275 Sum_probs=43.2
Q ss_pred HHHhhhhhhhccCCCChHHHHHHHHHHhhcCCCcccceeeeeeecchhHHHHHHHHH
Q 023793 177 AYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASF 233 (277)
Q Consensus 177 ~fllG~~~gl~~~PC~~p~l~~iL~~a~~~g~~~~G~~ll~~fglG~~lPlll~~~~ 233 (277)
-=.+|+...+..+.|. ++...+.-+-...+..+....-+.=++|+++.+++.+..
T Consensus 100 Yr~LGIfLPLITTNCa--VLgvaLln~~~~~~f~qsv~~gf~a~lGfslvmvlfA~i 154 (193)
T COG4657 100 YRLLGIFLPLITTNCA--VLGVALLNINEGHNFLQSVVYGFGAALGFSLVMVLFAAI 154 (193)
T ss_pred HHHHHHhhhhHhhchH--HHHHHHHHhhhhhhHHHHHHHHhhhHhhHHHHHHHHHHH
Confidence 3468999999999996 888777777777788888877777788888777776543
No 43
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=24.97 E-value=20 Score=31.29 Aligned_cols=21 Identities=14% Similarity=0.398 Sum_probs=14.7
Q ss_pred cccccccchhhhcCchhhhhh
Q 023793 248 SWINPMSGALLLGGGLYTFLD 268 (277)
Q Consensus 248 ~~i~~i~G~lli~~Gi~~ll~ 268 (277)
|+-+.+..+++++.|+|.+.+
T Consensus 161 ryg~~l~p~v~I~LGi~Il~e 181 (191)
T PF03596_consen 161 RYGRWLVPIVYIGLGIYILIE 181 (191)
T ss_pred HhcccHHHHHHHHhCceeeEe
Confidence 334445567899999997764
No 44
>COG1279 Lysine efflux permease [General function prediction only]
Probab=24.44 E-value=24 Score=31.01 Aligned_cols=51 Identities=20% Similarity=0.093 Sum_probs=36.6
Q ss_pred eeecchh----HHHHHHHHHHHHHHHHHhhcccccccccccchhhhcCchhhhhh
Q 023793 218 SYTTGYV----APLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLD 268 (277)
Q Consensus 218 ~fglG~~----lPlll~~~~~~~l~~~~~~~~~~~~i~~i~G~lli~~Gi~~ll~ 268 (277)
.|++|.. +-++.++...+.+++..+.+|..++++++.|++|...++++..+
T Consensus 147 ~F~~Ga~~aS~~WF~~L~~~a~~l~~~~~~pk~~riin~vva~vM~~ia~~L~~~ 201 (202)
T COG1279 147 FFALGAISASFLWFFLLALGARWLSPLLANPKAWRIINLVVAVVMWALAVKLAVQ 201 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHchhccCcHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5666764 33344555555666666778889999999999999999886543
No 45
>PRK02830 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=22.16 E-value=27 Score=30.72 Aligned_cols=79 Identities=13% Similarity=0.203 Sum_probs=47.5
Q ss_pred HhhhhhhhccCCCChHHHHHHHHHHhhcCCCcccceeeeeeecchhHHHHHHHHHHHHHHHHHhhcccccccccccchhh
Q 023793 179 LAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALL 258 (277)
Q Consensus 179 llG~~~gl~~~PC~~p~l~~iL~~a~~~g~~~~G~~ll~~fglG~~lPlll~~~~~~~l~~~~~~~~~~~~i~~i~G~ll 258 (277)
.+|....+..+-|. ++...+..+....++.+....-+..|+|+.+-+++++. +|+..+..+.-+-. +-..+.+
T Consensus 112 ~LGiflpLI~~NCa--VLG~al~~a~~~~~~~~s~~~glg~GlGf~lal~l~a~----iRE~l~~~~iP~~~-~g~pIa~ 184 (202)
T PRK02830 112 ALGIFLPLITVNCA--IFGGVLFMVQRDYNFGESVVYGFGSGIGWALAIVALAG----IREKMKYSDVPAGL-RGLGITF 184 (202)
T ss_pred HHhhhhhHHHHHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHccCCCCccc-CCccHHH
Confidence 47888889889996 88888777665446776666666666666666665544 44332333332222 2234556
Q ss_pred hcCchh
Q 023793 259 LGGGLY 264 (277)
Q Consensus 259 i~~Gi~ 264 (277)
+..|+.
T Consensus 185 i~~Gll 190 (202)
T PRK02830 185 ITTGLM 190 (202)
T ss_pred HHHHHH
Confidence 666654
No 46
>PRK01061 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=21.81 E-value=27 Score=31.58 Aligned_cols=80 Identities=18% Similarity=0.254 Sum_probs=46.9
Q ss_pred HHhhhhhhhccCCCChHHHHHHHHHHhhcCCCcccceeeeeeecchhHHHHHHHHHHHHHHHHHhhcccccccccccchh
Q 023793 178 YLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGAL 257 (277)
Q Consensus 178 fllG~~~gl~~~PC~~p~l~~iL~~a~~~g~~~~G~~ll~~fglG~~lPlll~~~~~~~l~~~~~~~~~~~~i~~i~G~l 257 (277)
-.+|....+..+-|. ++...+...+...++......-+.-|+|+.+-+++++. +|+..+..+.-+.+|. .++.
T Consensus 120 ~aLGifLPLIttNCa--VLG~al~~~~~~~~~~~S~~~Glg~GlGftLALvl~a~----iRErL~~~~iP~~~~G-~pIa 192 (244)
T PRK01061 120 LSLGIFLPLIAVNCA--ILGGVLFGITRNYPFIPMMIFSLGAGCGWWLAIVLFAT----IREKLAYSDVPKNLQG-MGIS 192 (244)
T ss_pred HHHhcchhHHHHHHH--HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhccCCCCccccc-hhHH
Confidence 347888899899996 77777655665556566666555666666666555543 4433333333333432 3345
Q ss_pred hhcCchh
Q 023793 258 LLGGGLY 264 (277)
Q Consensus 258 li~~Gi~ 264 (277)
++..|+.
T Consensus 193 fI~aGlm 199 (244)
T PRK01061 193 FITTGLI 199 (244)
T ss_pred HHHHHHH
Confidence 5555543
Done!