Query 023793
Match_columns 277
No_of_seqs 163 out of 1260
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 12:53:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023793.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023793hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g5s_E PINS homolog, G-protein 5.1 1.8E+02 0.0062 15.9 0.4 8 4-11 19-26 (26)
2 1v54_L VIIIA, cytochrome C oxi 3.5 2.6E+02 0.0089 17.7 0.2 11 219-229 29-39 (47)
3 3c0t_B Mediator of RNA polymer 3.3 3.3E+02 0.011 15.5 0.5 11 38-48 3-13 (33)
4 2y69_L Cytochrome C oxidase su 2.8 3.4E+02 0.012 18.3 0.2 11 219-229 45-55 (63)
5 2fft_A Thylakoid soluble phosp 2.7 2.7E+02 0.0091 19.9 -0.4 23 20-42 9-31 (84)
6 2dl0_A SAM and SH3 domain-cont 2.5 9.8E+02 0.034 17.0 2.6 26 24-51 24-49 (97)
7 1sg7_A Putative cation transpo 2.3 3.9E+02 0.013 19.6 0.1 10 67-76 14-23 (96)
8 2l9u_A Receptor tyrosine-prote 2.3 8.4E+02 0.029 14.5 1.5 19 98-116 7-25 (40)
9 1d6b_A Defensin-like peptide-2 2.2 7E+02 0.024 15.3 1.1 12 1-12 27-38 (42)
10 2k4p_A Phosphatidylinositol-3, 2.1 7.1E+02 0.024 17.4 1.3 26 22-49 25-50 (86)
No 1
>4g5s_E PINS homolog, G-protein-signaling modulator 2; galpha, goloco, galpha signaling, asymmetric cell division, cycle-signaling protein complex; HET: GDP CIT; 3.62A {Mus musculus}
Probab=5.12 E-value=1.8e+02 Score=15.92 Aligned_cols=8 Identities=25% Similarity=0.131 Sum_probs=4.9
Q ss_pred CCCCCCCC
Q 023793 4 NSNYFPSS 11 (277)
Q Consensus 4 ~~~~~p~~ 11 (277)
.-|.||+.
T Consensus 19 qrcapps~ 26 (26)
T 4g5s_E 19 QRCAPPSX 26 (26)
T ss_dssp SCBCCC--
T ss_pred ccCCCCCC
Confidence 46999973
No 2
>1v54_L VIIIA, cytochrome C oxidase polypeptide VIIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.6.1 PDB: 1oco_L* 1occ_L* 1ocz_L* 1ocr_L* 1v55_L* 2dyr_L* 2dys_L* 2eij_L* 2eik_L* 2eil_L* 2eim_L* 2ein_L* 2occ_L* 2ybb_W* 2zxw_L* 3abk_L* 3abl_L* 3abm_L* 3ag1_L* 3ag2_L* ...
Probab=3.51 E-value=2.6e+02 Score=17.70 Aligned_cols=11 Identities=27% Similarity=1.032 Sum_probs=5.5
Q ss_pred eecchhHHHHH
Q 023793 219 YTTGYVAPLLL 229 (277)
Q Consensus 219 fglG~~lPlll 229 (277)
++.|+++|+++
T Consensus 29 ~g~GF~~PF~i 39 (47)
T 1v54_L 29 FGSGFAAPFFI 39 (47)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhHHHH
Confidence 44555555543
No 3
>3c0t_B Mediator of RNA polymerase II transcription subunit 8; beta barrel, channel, protein-protein complex, activator, nucleus; 2.40A {Schizosaccharomyces pombe}
Probab=3.26 E-value=3.3e+02 Score=15.51 Aligned_cols=11 Identities=27% Similarity=0.259 Sum_probs=5.2
Q ss_pred cchhhHHHhhh
Q 023793 38 GQQANEAVLGQ 48 (277)
Q Consensus 38 ~~~~~~~~~~~ 48 (277)
+|++|+.+.+-
T Consensus 3 eqnanqmltdi 13 (33)
T 3c0t_B 3 EQNANQMLTDI 13 (33)
T ss_dssp --CHHHHHHHH
T ss_pred chhHHHHHHHH
Confidence 46666665443
No 4
>2y69_L Cytochrome C oxidase subunit 7C; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=2.81 E-value=3.4e+02 Score=18.27 Aligned_cols=11 Identities=27% Similarity=1.032 Sum_probs=5.8
Q ss_pred eecchhHHHHH
Q 023793 219 YTTGYVAPLLL 229 (277)
Q Consensus 219 fglG~~lPlll 229 (277)
+++|+++|+++
T Consensus 45 ~g~GF~~PF~i 55 (63)
T 2y69_L 45 FGSGFAAPFFI 55 (63)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhhhHHH
Confidence 45555555554
No 5
>2fft_A Thylakoid soluble phosphoprotein; TSP9, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Spinacia oleracea} SCOP: g.88.1.1
Probab=2.70 E-value=2.7e+02 Score=19.93 Aligned_cols=23 Identities=22% Similarity=0.117 Sum_probs=17.6
Q ss_pred eeccCCcccccccccccccchhh
Q 023793 20 TMADGSLGDMFGGFLYSAGQQAN 42 (277)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~ 42 (277)
+-.|.+..||+-..+|.-+|..+
T Consensus 9 akeEKgl~D~i~G~i~K~dQ~~E 31 (84)
T 2fft_A 9 TKQEKSFVDWLLGKITKEDQFYE 31 (84)
T ss_dssp CCCCCSHHHHHHHHHSCCCCSCC
T ss_pred ccccccHHHHHhhhhhhhhhhee
Confidence 34678899999888888877643
No 6
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=2.51 E-value=9.8e+02 Score=16.96 Aligned_cols=26 Identities=15% Similarity=0.077 Sum_probs=16.3
Q ss_pred CCcccccccccccccchhhHHHhhhccc
Q 023793 24 GSLGDMFGGFLYSAGQQANEAVLGQLSA 51 (277)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 51 (277)
..+.+|+... .++|+.+....+...+
T Consensus 24 ~sV~eWL~~i--gL~qY~~~F~~~g~d~ 49 (97)
T 2dl0_A 24 SSVSDWLISI--GLPMYAGTLSTAGFST 49 (97)
T ss_dssp CSHHHHHHHH--TCGGGHHHHHHHTCCS
T ss_pred CcHHHHHHHC--CCHHHHHHHHHcCCCc
Confidence 4567787654 5667777776665543
No 7
>1sg7_A Putative cation transport regulator CHAB; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: a.239.1.1
Probab=2.34 E-value=3.9e+02 Score=19.65 Aligned_cols=10 Identities=10% Similarity=0.212 Sum_probs=0.9
Q ss_pred cccCcceeee
Q 023793 67 TSLSPCTLSV 76 (277)
Q Consensus 67 tslsPC~l~~ 76 (277)
++|+||..|.
T Consensus 14 ~~~~~~~MpY 23 (96)
T 1sg7_A 14 SGFNPRGSPY 23 (96)
T ss_dssp --------CC
T ss_pred CCCCCCccCC
Confidence 4678888553
No 8
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=2.27 E-value=8.4e+02 Score=14.47 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=11.8
Q ss_pred cchhhhhhhHHHHHHHHhh
Q 023793 98 GDSIAFSLGLATTLALLGV 116 (277)
Q Consensus 98 ~~~~~f~lG~~~ty~~LG~ 116 (277)
..++....|.+..|..+|.
T Consensus 7 ~malt~i~gl~vif~~lg~ 25 (40)
T 2l9u_A 7 TMALTVIAGLVVIFMMLGG 25 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCc
Confidence 3455566677777776664
No 9
>1d6b_A Defensin-like peptide-2; helix, antiparallel beta-sheet, toxin; NMR {Ornithorhynchus anatinus} SCOP: g.9.1.1 PDB: 1zuf_A 1zue_A*
Probab=2.21 E-value=7e+02 Score=15.26 Aligned_cols=12 Identities=17% Similarity=0.343 Sum_probs=9.1
Q ss_pred CCCCCCCCCCCc
Q 023793 1 MSWNSNYFPSSQ 12 (277)
Q Consensus 1 ~~~~~~~~p~~~ 12 (277)
|.|.-|+-|+.|
T Consensus 27 ia~tyCeN~~qk 38 (42)
T 1d6b_A 27 MAWTYCENRNQK 38 (42)
T ss_dssp CSSCCCSSTTEE
T ss_pred eeeeeecCcccc
Confidence 568888888765
No 10
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Probab=2.15 E-value=7.1e+02 Score=17.39 Aligned_cols=26 Identities=4% Similarity=0.077 Sum_probs=16.4
Q ss_pred ccCCcccccccccccccchhhHHHhhhc
Q 023793 22 ADGSLGDMFGGFLYSAGQQANEAVLGQL 49 (277)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l 49 (277)
.+..+.+|+... .++|+.+....++.
T Consensus 25 ~~~~V~eWL~~l--gL~qY~~~F~~~g~ 50 (86)
T 2k4p_A 25 GEAGMSAWLRAI--GLERYEEGLVHNGW 50 (86)
T ss_dssp CSCSSHHHHHTT--TCGGGHHHHHTTTC
T ss_pred CcCcHHHHHHHC--CCHHHHHHHHHcCC
Confidence 345677787754 56677766665554
Done!