BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023794
(277 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C5W|P Chain P, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 310
Score = 283 bits (724), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 138/260 (53%), Positives = 185/260 (71%), Gaps = 3/260 (1%)
Query: 2 AGTEGPVIFCLHGGGYSGLSFALAAGKI--KEKARVVAMDLRGHGKSSSENDIDLSIETM 59
+G+EGPV+ LHGGG+S LS+A+ I + + R+VA+DLR HG++ +N DLS ETM
Sbjct: 38 SGSEGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRSHGETKVKNPEDLSAETM 97
Query: 60 CNDVLAVLKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLRSLHGLVVVDVVEGTAMASL 119
DV V++ MYG+ PP I+L+GH+MGG++AVH A+ + SL GL ++DVVEGTAM +L
Sbjct: 98 AKDVGNVVEAMYGDLPPPIMLIGHAMGGAIAVHTASSNLVPSLLGLCMIDVVEGTAMDAL 157
Query: 120 IHMQKILSTRMQHFSSIEKAIEWSVKGGSLRNLDSARLSIPSTLKYDDSKKCYVYRARLE 179
MQ L R + F S+E AIEWSVK G +RNL+SAR+S+ +K + K Y +R L
Sbjct: 158 NSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQCEGKP-YTWRIELA 216
Query: 180 ETEQYWRAWYEGLSEKFLSCPVPKLLLLAGTDRLDRPLTIGQMQGKFQMVVVRHTGHAIQ 239
+TE+YW W+ GLS FLSCP+PKLLLLAG DRLD+ LTIGQMQGKFQM V+ GHA+
Sbjct: 217 KTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLDKDLTIGQMQGKFQMQVLPQCGHAVH 276
Query: 240 EDAPEEFASLILNFIARNRI 259
EDAP++ A + F+ R+R
Sbjct: 277 EDAPDKVAEAVATFLIRHRF 296
>pdb|3C5V|A Chain A, Pp2a-Specific Methylesterase Apo Form (Pme)
Length = 316
Score = 280 bits (717), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 141/269 (52%), Positives = 187/269 (69%), Gaps = 11/269 (4%)
Query: 2 AGTEGPVIFCLHGGGYSGLSFALAAGKI--KEKARVVAMDLRGHGKSSSENDIDLSIETM 59
+G+EGPV+ LHGGG+S LS+A+ I + + R+VA+DLR HG++ +N DLS ETM
Sbjct: 34 SGSEGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRSHGETKVKNPEDLSAETM 93
Query: 60 CNDVLAVLKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLRSLHGLVVVDVVEGTAMASL 119
DV V++ MYG+ PP I+L+GHSMGG++AVH A+ + SL GL ++DVVEGTAM +L
Sbjct: 94 AKDVGNVVEAMYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCMIDVVEGTAMDAL 153
Query: 120 IHMQKILSTRMQHFSSIEKAIEWSVKGGSLRNLDSARLSIPSTLKY-------DDSKK-- 170
MQ L R + F S+E AIEWSVK G +RNL+SAR+S+ +K + SKK
Sbjct: 154 NSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQCEGITSPEGSKKDH 213
Query: 171 CYVYRARLEETEQYWRAWYEGLSEKFLSCPVPKLLLLAGTDRLDRPLTIGQMQGKFQMVV 230
Y +R L +TE+YW W+ GLS FLSCP+PKLLLLAG DRLD+ LTIGQMQGKFQM V
Sbjct: 214 PYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLDKDLTIGQMQGKFQMQV 273
Query: 231 VRHTGHAIQEDAPEEFASLILNFIARNRI 259
+ GHA+ EDAP++ A + F+ R+R
Sbjct: 274 LPQCGHAVHEDAPDKVAEAVATFLIRHRF 302
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 112/259 (43%), Gaps = 24/259 (9%)
Query: 3 GTEGPVIFCLHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKSSSENDIDLSIETMCND 62
G P + LHGGG + ++ + E A +A+DL GHG S+ D + S +
Sbjct: 78 GGSAPRVIFLHGGGQNAHTWDTVIVGLGEPA--LAVDLPGHGHSAWREDGNYSPQLNSET 135
Query: 63 VLAVLKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLRSLHG-LVVVDVVEGTAM--ASL 119
+ VL+E+ P + +VG S+GG A+ +AA L G LV+VDV A L
Sbjct: 136 LAPVLREL---APGAEFVVGMSLGGLTAIRLAAMAP--DLVGELVLVDVTPSALQRHAEL 190
Query: 120 IHMQKILSTRM---QHFSSIEKAIEWSVKGGSLRNLDSARLSI-PSTLKYDDSKKCYVYR 175
Q+ M + F S + ++ ++ R++ S R + ++ + D+ + Y
Sbjct: 191 TAEQRGTVALMHGEREFPSFQAMLDLTIAAAPHRDVKSLRRGVFHNSRRLDNGNWVWRYD 250
Query: 176 ARLEETEQYWRAWYEGLSEKFLSCPVPKLLLLAGTDRLDRPLTIGQMQGK---FQMV-VV 231
A + + GL + + P L+ G+ ++ + F+ V +V
Sbjct: 251 AIRTFGD------FAGLWDDVDALSAPITLVRGGSSGFVTDQDTAELHRRATHFRGVHIV 304
Query: 232 RHTGHAIQEDAPEEFASLI 250
+GH++Q D P ++
Sbjct: 305 EKSGHSVQSDQPRALIEIV 323
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 62/108 (57%), Gaps = 6/108 (5%)
Query: 5 EGPVIFCLHGGGYSGLSFALAAGKIKEKA-RVVAMDLRGHGKSSS-ENDIDLSIETMCND 62
E PV+ C+HG GL++ A + + RVVA DL GHG+SS E S T
Sbjct: 25 EHPVVLCIHGILEQGLAWQEVALPLAAQGYRVVAPDLFGHGRSSHLEMVTSYSSLTFLAQ 84
Query: 63 VLAVLKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLRSLHGLVVVDV 110
+ V++E+ +QP ++LVGHSMG +A +A+ + + + L++V++
Sbjct: 85 IDRVIQEL-PDQP--LLLVGHSMGAMLATAIASVRP-KKIKELILVEL 128
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 3 GTEGPVIFCLHGGG-YSGLSFALAAGKIKEKARVVAMDLRGHGKSSSENDIDLSIETMCN 61
GT +IF HG G +SG LA + V A D GHG+S E +
Sbjct: 57 GTPKALIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQSEGERMVVSDFHVFVR 116
Query: 62 DVLAVLKEMYGEQPP-SIVLVGHSMGGSVAVHVAAKK 97
DVL + M + P + L+GHSMGG++A+ AA++
Sbjct: 117 DVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAER 153
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 3 GTEGPVIFCLHGGG-YSGLSFALAAGKIKEKARVVAMDLRGHGKSSSENDIDLSIETMCN 61
GT +IF HG G +SG LA + V A D GHG+S E +
Sbjct: 56 GTPKALIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQSEGERMVVSDFHVFVR 115
Query: 62 DVLAVLKEMYGEQPP-SIVLVGHSMGGSVAVHVAAKK 97
DVL + M + P + L+GHSMGG++A+ AA++
Sbjct: 116 DVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAER 152
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 3 GTEGPVIFCLHGGG-YSGLSFALAAGKIKEKARVVAMDLRGHGKSSSENDIDLSIETMCN 61
GT +IF HG G +SG LA + V A D GHG+S E +
Sbjct: 39 GTPKALIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQSEGERMVVSDFHVFVR 98
Query: 62 DVLAVLKEMYGEQPP-SIVLVGHSMGGSVAVHVAAKK 97
DVL + M + P + L+GHSMGG++A+ AA++
Sbjct: 99 DVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAER 135
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 8/107 (7%)
Query: 5 EGPVIFCLHGGGYSGLSFALA-AGKIKEKARVVAMDLRGHGKSSSENDID--LSIETMCN 61
EG + +HG SG FA G+I +K RV+A DL GHGKS+ D D S+E +
Sbjct: 23 EGAPLLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSYSMEGYAD 82
Query: 62 DVLAVLKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLRSLHGLVVV 108
+ V++++ V+ G S+GG + + + A+ + GL++
Sbjct: 83 AMTEVMQQL---GIADAVVFGWSLGGHIGIEMIARYP--EMRGLMIT 124
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 8/107 (7%)
Query: 5 EGPVIFCLHGGGYSGLSFALA-AGKIKEKARVVAMDLRGHGKSSSENDID--LSIETMCN 61
EG + +HG SG FA G+I +K RV+A DL GHGKS+ D D S+E +
Sbjct: 23 EGAPLLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSYSMEGYAD 82
Query: 62 DVLAVLKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLRSLHGLVVV 108
+ V++++ V+ G S+GG + + + A+ + GL++
Sbjct: 83 AMTEVMQQL---GIADAVVFGWSLGGHIGIEMIARYP--EMRGLMIT 124
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 6 GPVIFCLHGGGYSGLSFALAAGKIKEKA-RVVAMDLRGHGKSSSENDI-DLSIETMCNDV 63
GP + HG S S+ + + RV+AMD++G+G+SS+ +I + +E +C ++
Sbjct: 39 GPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEM 98
Query: 64 LAVLKEMYGEQPPSIVLVGHSMGGSVAVHVA 94
+ L ++ Q V +GH GG + ++A
Sbjct: 99 VTFLDKLGLSQ---AVFIGHDWGGMLVWYMA 126
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 6 GPVIFCLHGGGYSGLSFALAAGKIKEKA-RVVAMDLRGHGKSSSENDI-DLSIETMCNDV 63
GP + HG S S+ + + RV+AMD++G+G+SS+ +I + +E +C ++
Sbjct: 54 GPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEM 113
Query: 64 LAVLKEMYGEQPPSIVLVGHSMGGSVAVHVA 94
+ L ++ Q V +GH GG + ++A
Sbjct: 114 VTFLDKLGLSQ---AVFIGHDWGGMLVWYMA 141
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 6 GPVIFCLHGGGYSGLSFALAAGKIKEKA-RVVAMDLRGHGKSSSENDI-DLSIETMCNDV 63
GP + HG S S+ + + RV+AMD++G+G+SS+ +I + +E +C ++
Sbjct: 258 GPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEM 317
Query: 64 LAVLKEMYGEQPPSIVLVGHSMGGSVAVHVA 94
+ L ++ Q V +GH GG + ++A
Sbjct: 318 VTFLDKLGLSQ---AVFIGHDWGGMLVWYMA 345
>pdb|4G8B|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8B|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8D|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
pdb|4G8D|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
Length = 279
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 5 EGPVIFCLHGGGYSGLSFALA-AGKIKEKARVVAMDLRGHGKSSSENDID--LSIETMCN 61
EG + +HG SG FA G+I +K RV+A DL GHGKS+ D D S+E +
Sbjct: 23 EGAPLLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSYSMEGYAD 82
Query: 62 DVLAVLKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLRSLHGLVVV 108
+ V++++ V+ G +GG + + + A+ + GL++
Sbjct: 83 AMTEVMQQL---GIADAVVFGWGLGGHIGIEMIARYP--EMRGLMIT 124
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 119/295 (40%), Gaps = 55/295 (18%)
Query: 6 GPVIFCLHGGGYSGLSFALAAGKIKEKA-RVVAMDLRGHGKSSSENDI-DLSIETMCNDV 63
GP + HG S S+ + + RV+A+D++G+G SSS +I + ++E +C ++
Sbjct: 256 GPALCLCHGFPESWFSWRYQIPALAQAGFRVLAIDMKGYGDSSSPPEIEEYAMELLCKEM 315
Query: 64 LAVLKEMYGEQPPSIVLVGHSMGGSVAVH-------------------------VAAKKT 98
+ L ++ P V +GH G + + V+ K
Sbjct: 316 VTFLDKL---GIPQAVFIGHDWAGVMVWNMALFYPERVRAVASLNTPFMPPDPDVSPMKV 372
Query: 99 LRSL--HGLVVVDVVEGTAMASL-IHMQKILSTRMQH-----FSSIEKAIEWSVKGGSLR 150
+RS+ + G A A L +M + + + F ++ KA E GG L
Sbjct: 373 IRSIPVFNYQLYFQEPGVAEAELEKNMSRTFKSFFRASDETGFIAVHKATE---IGGILV 429
Query: 151 NL-DSARLSIPSTLK----YDDSKKCYVYRARLE---ETEQYWRAWYEGLSEKFLSCPVP 202
N + LS +T + Y K +R L TE+ W+ +GL K L VP
Sbjct: 430 NTPEDPNLSKITTEEEIEFYIQQFKKTGFRGPLNWYRNTERNWKWSCKGLGRKIL---VP 486
Query: 203 KLLLLAGTDRLDRPLTIGQMQGKFQMVVVRH---TGHAIQEDAPEEFASLILNFI 254
L++ A D + RP M+ + H GH Q + P E +++ ++
Sbjct: 487 ALMVTAEKDIVLRPEMSKNMEKWIPFLKRGHIEDCGHWTQIEKPTEVNQILIKWL 541
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 3 GTEGPVIFCLHGGG-YSGLSFALAAGKIKEKARVVAMDLRGHGKSSSENDIDLSIETMCN 61
GT +IF HG G +SG LA V A D GHG+S E +
Sbjct: 56 GTPKALIFVSHGAGEHSGRYEELARXLXGLDLLVFAHDHVGHGQSEGERXVVSDFHVFVR 115
Query: 62 DVLAVLKEMYGEQPP-SIVLVGHSMGGSVAVHVAAKK 97
DVL + + P + L+GHS GG++A+ AA++
Sbjct: 116 DVLQHVDSXQKDYPGLPVFLLGHSXGGAIAILTAAER 152
>pdb|4B9A|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa.
pdb|4B9E|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa, With Bound Mfa
Length = 301
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 12/132 (9%)
Query: 6 GPVIFCLHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKSSS--ENDIDLSIETMCNDV 63
GP + LHG + L++ A ++ E VV DLRG+G+S + E D S + D
Sbjct: 31 GPPLLLLHGYPQTHLAWHRIAPRLAEDYSVVLADLRGYGESRALDEEGADYSKAALARDQ 90
Query: 64 LAVLKEMYGEQPPSIVLVGHSMGGSVAVHVAAK--KTLRSLHGLVVVDVVEGTAMASLIH 121
L + ++ E+ ++GH G V +A + + + L VV +++ A
Sbjct: 91 LETMGQLGFER---FAVIGHDRGARVGYRLALDHPQAVAAFVSLTVVPILDNWAA----- 142
Query: 122 MQKILSTRMQHF 133
+ K+ + H+
Sbjct: 143 VNKVFALNAYHW 154
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/261 (20%), Positives = 111/261 (42%), Gaps = 25/261 (9%)
Query: 5 EGPVIFCLHGGGYSGLSFA---LAAGKIKEKARVVAMDLRGHGKSSSENDIDLSIETMCN 61
EG + +HG G ++A L + + RV+A D+ G G + + + S ++ +
Sbjct: 24 EGQPVILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFGFTDRPENYNYSKDSWVD 83
Query: 62 DVLAVLKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLRSLHGLVVVDVVEGTAMASLIH 121
++ ++ + E+ +VG+S GG +A+ A + + R V +V A+ +
Sbjct: 84 HIIGIMDALEIEKAH---IVGNSFGGGLAIATALRYSER------VDRMVLMGAVGTRFD 134
Query: 122 MQKILSTRMQHFSSIEKA---IEWSVKGGSLRNLDSARLSIPSTLK--YDDSKKCYVYRA 176
+ + L+ + SIE ++ SL + ARL ++++ + +S + +
Sbjct: 135 VTEGLNAVWGYTPSIENMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQES-----FSS 189
Query: 177 RLEETEQYWRAWYEGLSEKFLSCPVPKLLLLAGTDR---LDRPLTIGQMQGKFQMVVVRH 233
E Q W E + P L++ D+ L L +G++ + Q+ V
Sbjct: 190 MFPEPRQRWIDALASSDEDIKTLPNETLIIHGREDQVVPLSSSLRLGELIDRAQLHVFGR 249
Query: 234 TGHAIQEDAPEEFASLILNFI 254
GH Q + + F L++ F
Sbjct: 250 CGHWTQIEQTDRFNRLVVEFF 270
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 101/254 (39%), Gaps = 14/254 (5%)
Query: 6 GPVIFCLHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKSSSENDIDLSIETMCNDVLA 65
GP+ HG + F ++ ++ +A+D RGHG S + + +D+
Sbjct: 68 GPLXLFFHGITSNSAVFEPLXIRLSDRFTTIAVDQRGHGL-SDKPETGYEANDYADDIAG 126
Query: 66 VLKEMYGEQPPSIVLVGHSMGGSVAVHVAAK--KTLRSLHGLVVVDVVEGTAMASLIHMQ 123
+++ + +LVGHS+G +V AAK +RS +V +D +L ++
Sbjct: 127 LIRTLARGH---AILVGHSLGARNSVTAAAKYPDLVRS---VVAIDFTPYIETEALDALE 180
Query: 124 KILSTRMQHFSSIEKAIEWSVKGGSLRNLDSARLSIPSTLKYDDSKKCYVYRARLEETEQ 183
++ Q F I KA+E + G N+ + + I + Y A Q
Sbjct: 181 ARVNAGSQLFEDI-KAVEAYL-AGRYPNIPADAIRIRAESGYQPVDGGLRPLASSAAXAQ 238
Query: 184 YWRAWYEGLSEKFLSCPVPKLLLLAGTDRLDRPLTIGQ---MQGKFQMVVVRHTGHAIQE 240
R L + P L++ + +L + + ++ +VVV H + E
Sbjct: 239 TARGLRSDLVPAYRDVTKPVLIVRGESSKLVSAAALAKTSRLRPDLPVVVVPGADHYVNE 298
Query: 241 DAPEEFASLILNFI 254
+PE I NFI
Sbjct: 299 VSPEITLKAITNFI 312
>pdb|3R3V|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3V|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3W|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3W|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3X|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R3X|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R40|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
pdb|3R40|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
Length = 306
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/278 (20%), Positives = 107/278 (38%), Gaps = 31/278 (11%)
Query: 3 GTEGPVIFCLHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKS----SSENDIDLSIET 58
G +GP + LHG + + + A K+ E+ +V+ DL G+G S S E +
Sbjct: 30 GGDGPPLLLLHGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPYTKRA 89
Query: 59 MCNDVLAVLKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLRSLHGLVVVDVVEGTAMAS 118
M ++ ++++ L GH+ G V+ +A R L L V+D++
Sbjct: 90 MAKQLIEAMEQLGHVH---FALAGHNRGARVSYRLALDSPGR-LSKLAVLDIL--PTYEY 143
Query: 119 LIHMQKILSTRMQHFSSIEK--AIEWSVKGGSLRNLDSARLSIPS---TLKYDDSKKCYV 173
M + + ++ H+S + + + ++ GG A+L+ + L D +
Sbjct: 144 WQRMNRAYALKIYHWSFLAQPAPLPENLLGGDPDFYVKAKLASWTRAGDLSAFDPRAVEH 203
Query: 174 YRARLEET-------EQYWRAWYEGLSEKFLSC------PVPKLLLLAGT---DRLDRPL 217
YR + E Y Y + PVP L L + PL
Sbjct: 204 YRIAFADPMRRHVMCEDYRAGAYADFEHDKIDVEAGNKIPVPMLALWGASGIAQSAATPL 263
Query: 218 TIGQMQGKFQMVVVRHTGHAIQEDAPEEFASLILNFIA 255
+ + +GH + E+AP++ A ++ F +
Sbjct: 264 DVWRKWASDVQGAPIESGHFLPEEAPDQTAEALVRFFS 301
>pdb|3R3U|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3Z|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
Length = 306
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/278 (20%), Positives = 106/278 (38%), Gaps = 31/278 (11%)
Query: 3 GTEGPVIFCLHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKS----SSENDIDLSIET 58
G +GP + LHG + + + A K+ E+ +V+ DL G+G S S E +
Sbjct: 30 GGDGPPLLLLHGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPYTKRA 89
Query: 59 MCNDVLAVLKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLRSLHGLVVVDVVEGTAMAS 118
M ++ ++++ L GH G V+ +A R L L V+D++
Sbjct: 90 MAKQLIEAMEQLGHVH---FALAGHDRGARVSYRLALDSPGR-LSKLAVLDIL--PTYEY 143
Query: 119 LIHMQKILSTRMQHFSSIEK--AIEWSVKGGSLRNLDSARLSIPS---TLKYDDSKKCYV 173
M + + ++ H+S + + + ++ GG A+L+ + L D +
Sbjct: 144 WQRMNRAYALKIYHWSFLAQPAPLPENLLGGDPDFYVKAKLASWTRAGDLSAFDPRAVEH 203
Query: 174 YRARLEET-------EQYWRAWYEGLSEKFLSC------PVPKLLLLAGT---DRLDRPL 217
YR + E Y Y + PVP L L + PL
Sbjct: 204 YRIAFADPMRRHVMCEDYRAGAYADFEHDKIDVEAGNKIPVPMLALWGASGIAQSAATPL 263
Query: 218 TIGQMQGKFQMVVVRHTGHAIQEDAPEEFASLILNFIA 255
+ + +GH + E+AP++ A ++ F +
Sbjct: 264 DVWRKWASDVQGAPIESGHFLPEEAPDQTAEALVRFFS 301
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 1 MAGTEGPVIFCLHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKSS----SENDIDLSI 56
+ G GP + LHG + +A A + + VV DLRG+G SS + + + S
Sbjct: 20 VVGGSGPALLLLHGFPQNLHMWARVAPLLANEYTVVCADLRGYGGSSKPVGAPDHANYSF 79
Query: 57 ETMCNDVLAVLKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLRSLHGLVVVDVVEGTAM 116
M +D +++ + E+ LVGH+ GG H A S+ L V+D++ M
Sbjct: 80 RAMASDQRELMRTLGFER---FHLVGHARGGRTG-HRMALDHPDSVLSLAVLDIIPTYVM 135
>pdb|2XMZ|A Chain A, Structure Of Menh From S. Aureus
Length = 269
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 8 VIFCLHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKSSSENDIDLS---IETMCNDVL 64
V+ LHG ++ K + V+ +DL GHG+ S D + I T+ + +L
Sbjct: 18 VLVFLHGFLSDSRTYHNHIEKFTDNYHVITIDLPGHGEDQSSMDETWNFDYITTLLDRIL 77
Query: 65 AVLKEMYGEQPPSIVLVGHSMGGSVAVHVA 94
K+ SI L G+SMGG VA++ A
Sbjct: 78 DKYKD------KSITLFGYSMGGRVALYYA 101
>pdb|3R41|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
pdb|3R41|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
Length = 306
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 10/140 (7%)
Query: 3 GTEGPVIFCLHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKS----SSENDIDLSIET 58
G +GP + LHG + + + A K+ E+ +V+ DL G+G S S E +
Sbjct: 30 GGDGPPLLLLHGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPYTKRA 89
Query: 59 MCNDVLAVLKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLRSLHGLVVVDVVEGTAMAS 118
M ++ ++++ L GH G V+ +A R L L V+D++
Sbjct: 90 MAKQLIEAMEQLGHVH---FALAGHDRGARVSYRLALDSPGR-LSKLAVLDIL--PTYEY 143
Query: 119 LIHMQKILSTRMQHFSSIEK 138
M + + ++ H+S + +
Sbjct: 144 WQRMNRAYALKIYHWSFLAQ 163
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 1 MAGTEGPVIFCLHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKSS----SENDIDLSI 56
+ G GP + LHG + +A A + + VV DLRG+G SS + + + S
Sbjct: 20 VVGGSGPALLLLHGFPQNLHMWARVAPLLANEYTVVCADLRGYGGSSKPVGAPDHANYSF 79
Query: 57 ETMCNDVLAVLKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLRSLHGLVVVDVVEGTAM 116
M +D +++ + E+ LVGH GG H A S+ L V+D++ M
Sbjct: 80 RAMASDQRELMRTLGFER---FHLVGHDRGGRTG-HRMALDHPDSVLSLAVLDIIPTYVM 135
>pdb|2WJ3|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ4|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ6|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
Length = 276
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 4 TEGPVIFCLHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKSSSENDIDLSIETMCNDV 63
T+GP I L G + + ++ RV+ + RGHG S SE D + D
Sbjct: 25 TDGPAILLLPGWCHDHRVYKYLIQELDADFRVIVPNWRGHGLSPSEVP-DFGYQEQVKDA 83
Query: 64 LAVLKEMYGEQPPSIVLVGHSMGGSVAVHV 93
L +L ++ E + + V HS GG V V +
Sbjct: 84 LEILDQLGVE---TFLPVSHSHGGWVLVEL 110
>pdb|3R3Y|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
pdb|3R3Y|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
Length = 306
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 10/140 (7%)
Query: 3 GTEGPVIFCLHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKS----SSENDIDLSIET 58
G +GP + LHG + + + A K+ E+ +V+ DL G+G S S E +
Sbjct: 30 GGDGPPLLLLHGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPYTKRA 89
Query: 59 MCNDVLAVLKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLRSLHGLVVVDVVEGTAMAS 118
M ++ ++++ L GH G V+ +A R L L V+D++
Sbjct: 90 MAKQLIEAMEQLGHVH---FALAGHXRGARVSYRLALDSPGR-LSKLAVLDIL--PTYEY 143
Query: 119 LIHMQKILSTRMQHFSSIEK 138
M + + ++ H+S + +
Sbjct: 144 WQRMNRAYALKIYHWSFLAQ 163
>pdb|2WM2|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
Length = 279
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 4 TEGPVIFCLHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKSSSENDIDLSIETMCNDV 63
T+GP I L G + + ++ RV+ + RGHG S SE D + D
Sbjct: 28 TDGPAILLLPGWCHDHRVYKYLIQELDADFRVIVPNWRGHGLSPSEVP-DFGYQEQVKDA 86
Query: 64 LAVLKEMYGEQPPSIVLVGHSMGGSVAVHV 93
L +L ++ E + + V HS GG V V +
Sbjct: 87 LEILDQLGVE---TFLPVSHSHGGWVLVEL 113
>pdb|2PSH|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSH|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 48/113 (42%), Gaps = 6/113 (5%)
Query: 4 TEGPVIFCLHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKSSSENDIDLSIETMCNDV 63
E VIF LHG S + I+ AR + DL G GKS + + +
Sbjct: 43 AENAVIF-LHGNATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNGSYRLLDHYKYL 101
Query: 64 LAVLKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLR---SLHGLVVVDVVEG 113
A + + P I+ VGH G ++A H A + R +H VVDV+E
Sbjct: 102 TAWFELL--NLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVDVIES 152
>pdb|2PSD|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSE|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 318
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 48/113 (42%), Gaps = 6/113 (5%)
Query: 4 TEGPVIFCLHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKSSSENDIDLSIETMCNDV 63
E VIF LHG S + I+ AR + DL G GKS + + +
Sbjct: 42 AENAVIF-LHGNATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNGSYRLLDHYKYL 100
Query: 64 LAVLKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLR---SLHGLVVVDVVEG 113
A + + P I+ VGH G ++A H A + R +H VVDV+E
Sbjct: 101 TAWFELL--NLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVDVIES 151
>pdb|2PSF|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSF|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 310
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Query: 4 TEGPVIFCLHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKSSSENDIDLSIETMCNDV 63
E VIF LHG S + I+ AR + DL G GKS + + +
Sbjct: 42 AENAVIF-LHGNATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNGSYRLLDHYKYL 100
Query: 64 LAVLKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLR---SLHGLVVVDVVE 112
A + + P I+ VGH G ++A H A + R +H VVDV+E
Sbjct: 101 TAWFELL--NLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVDVIE 150
>pdb|2PSJ|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSJ|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 48/113 (42%), Gaps = 6/113 (5%)
Query: 4 TEGPVIFCLHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKSSSENDIDLSIETMCNDV 63
E VIF LHG S + I+ AR + DL G GKS + + +
Sbjct: 43 AENAVIF-LHGNATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNGSYRLLDHYKYL 101
Query: 64 LAVLKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLR---SLHGLVVVDVVEG 113
A + + P I+ VGH G ++A H A + R +H VVDV+E
Sbjct: 102 TAWFELL--NLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVDVIES 152
>pdb|2YYS|A Chain A, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
pdb|2YYS|B Chain B, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
Length = 286
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 4 TEGPVIFCLHGGGYSGLSFALAAG--KIKEKARVVAMDLRGHGKS--SSENDIDLSIETM 59
EGP +F LHGG G ++ L G E RVV D RG G+S ++ +++ +
Sbjct: 23 VEGPALFVLHGGP-GGNAYVLREGLQDYLEGFRVVYFDQRGSGRSLELPQDPRLFTVDAL 81
Query: 60 CNDVLAVLKEMYGEQPPSIVLVGHSMGGSVAVHV 93
D L +L E G + L+ H G VA+ V
Sbjct: 82 VEDTL-LLAEALGVE--RFGLLAHGFGAVVALEV 112
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 5 EGPVIFCLHGGGYSGLSF-----ALAAGKIKEKARVVAMDLRGHGKSSSEN-DIDLSIET 58
+GP++ LHG S S+ ALA RVVA+D RG+G+SS I+
Sbjct: 32 QGPLVVLLHGFPESWYSWRHQIPALAGAGY----RVVAIDQRGYGRSSKYRVQKAYRIKE 87
Query: 59 MCNDVLAVLKEMYGEQPPSIVLVGHSMGGSVAVHVA 94
+ DV+ VL EQ +VGH G VA A
Sbjct: 88 LVGDVVGVLDSYGAEQ---AFVVGHDWGAPVAWTFA 120
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 230 VVRHTGHAIQEDAPEEFASLILNFIARNR 258
++ GH IQ++APEE L+L+F+ R
Sbjct: 333 MIADVGHWIQQEAPEETNRLLLDFLGGLR 361
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 5 EGPVIFCLHGGGYSGLSF-----ALAAGKIKEKARVVAMDLRGHGKSSSEN-DIDLSIET 58
+GP++ LHG S S+ ALA RVVA+D RG+G+SS I+
Sbjct: 26 QGPLVVLLHGFPESWYSWRHQIPALAGAGY----RVVAIDQRGYGRSSKYRVQKAYRIKE 81
Query: 59 MCNDVLAVLKEMYGEQPPSIVLVGHSMGGSVAVHVA 94
+ DV+ VL EQ +VGH G VA A
Sbjct: 82 LVGDVVGVLDSYGAEQ---AFVVGHDWGAPVAWTFA 114
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 230 VVRHTGHAIQEDAPEEFASLILNFIARNR 258
++ GH IQ++APEE L+L+F+ R
Sbjct: 327 MIADVGHWIQQEAPEETNRLLLDFLGGLR 355
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 18/138 (13%)
Query: 2 AGTEGPVIFCLHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKSSS----ENDIDLSIE 57
AG P++ LHG + + + A + VVA DLRG+G SS + I+ S
Sbjct: 22 AGHGAPLLL-LHGYPQTHVMWHKIAPLLANNFTVVATDLRGYGDSSRPASVPHHINYSKR 80
Query: 58 TMCNDVLAVLKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLRSLHGLVVVDVVEGTAMA 117
M D + V+ ++ EQ +VGH G VA +A R V+ A+
Sbjct: 81 VMAQDQVEVMSKLGYEQ---FYVVGHDRGARVAHRLALDHPHR----------VKKLALL 127
Query: 118 SLIHMQKILSTRMQHFSS 135
+ K+ T Q F++
Sbjct: 128 DIAPTHKMYRTTDQEFAT 145
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 46/98 (46%), Gaps = 15/98 (15%)
Query: 5 EGPVIFCLHGGGYSG------LSFALAAGKIKEKARVVAMDLRGHGKSSSENDIDLSIET 58
+ PVI HG S L F LA G RVVA D RGHG+SS D ++
Sbjct: 21 DAPVIHFHHGWPLSADDWDAQLLFFLAHGY-----RVVAHDRRGHGRSSQVWD-GHDMDH 74
Query: 59 MCNDVLAVLKEMYGEQPPSIVLVGHSMGGSVAVHVAAK 96
+DV AV+ + G Q V VGHS GG V A+
Sbjct: 75 YADDVAAVVAHL-GIQ--GAVHVGHSTGGGEVVRYMAR 109
>pdb|3CXU|A Chain A, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
pdb|3CXU|B Chain B, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
Length = 328
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 5 EGPVIFCLHGGGYSGLSFALAAGKIKEKA-RVVAMDLRGHGKSSSE--NDID-LSIETMC 60
EGP I +HG S+ + E+ R VA DLRG+G ++ ND SI +
Sbjct: 30 EGPTILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRGYGDTTGAPLNDPSKFSILHLV 89
Query: 61 NDVLAVLKEMYGEQPPSIVLVGHSMGGSVAVHV 93
DV+A+L E + +V H G +A H+
Sbjct: 90 GDVVALL-EAIAPNEEKVFVVAHDWGALIAWHL 121
>pdb|2CJP|A Chain A, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
pdb|2CJP|B Chain B, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
Length = 328
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 5 EGPVIFCLHGGGYSGLSFALAAGKIKEKA-RVVAMDLRGHGKSSSE--NDID-LSIETMC 60
EGP I +HG S+ + E+ R VA DLRG+G ++ ND SI +
Sbjct: 30 EGPTILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRGYGDTTGAPLNDPSKFSILHLV 89
Query: 61 NDVLAVLKEMYGEQPPSIVLVGHSMGGSVAVHV 93
DV+A+L E + +V H G +A H+
Sbjct: 90 GDVVALL-EAIAPNEEKVFVVAHDWGALIAWHL 121
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 106/285 (37%), Gaps = 54/285 (18%)
Query: 7 PVIFCLHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKSSSENDIDLSIETMCNDVLAV 66
PV+F LHG S + + R +A DL G GK S + D+D + + A
Sbjct: 34 PVLF-LHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGK-SDKPDLDYFFDDHVRYLDAF 91
Query: 67 LKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLRSLHGLVVVDVVEGTAMASLIHMQKIL 126
++ + E+ +VLV H G ++ H AK+ + G+ ++ + H ++
Sbjct: 92 IEALGLEE---VVLVIHDWGSALGFH-WAKRNPERVKGIACMEFIRPIPTWDEFHHTEVA 147
Query: 127 STR------MQHFSSIEKA-------------IEWSVKGGSLRNLDSARLSIPSTLKYDD 167
+ + F + A IE + GG +R L + ++ D
Sbjct: 148 EEQDHAEAARETFQAFRTADVGRELIIDQNAFIERVLPGGVVRPL--------TEVEMDH 199
Query: 168 SKKCYVYRARLEETEQYWRAWYE-----------GLSEKFLS----CPVPKLLLLAGTDR 212
++ ++ + + E WR E L E +++ PVPKLL
Sbjct: 200 YREPFL---KPVDREPLWRFPNELPIAGEPANIVALVEAYMNWLHQSPVPKLLFWGTPGA 256
Query: 213 LDRPLTIGQMQGKFQMVVVRHTG---HAIQEDAPEEFASLILNFI 254
L P ++ G H +QED P+ S I ++
Sbjct: 257 LIPPAEAARLAESLPNCKTVDIGPGLHYLQEDNPDLIGSEIARWL 301
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 106/285 (37%), Gaps = 54/285 (18%)
Query: 7 PVIFCLHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKSSSENDIDLSIETMCNDVLAV 66
PV+F LHG S + + R +A DL G GK S + D+D + + A
Sbjct: 34 PVLF-LHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGK-SDKPDLDYFFDDHVRYLDAF 91
Query: 67 LKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLRSLHGLVVVDVVEGTAMASLIHMQKIL 126
++ + E+ +VLV H G ++ H AK+ + G+ ++ + H ++
Sbjct: 92 IEALGLEE---VVLVIHDWGSALGFH-WAKRNPERVKGIACMEFIRPIPTWDEFHHTEVA 147
Query: 127 STR------MQHFSSIEKA-------------IEWSVKGGSLRNLDSARLSIPSTLKYDD 167
+ + F + A IE + GG +R L + ++ D
Sbjct: 148 EEQDHAEAARETFQAFRTADVGRELIIDQNAFIERVLPGGVVRPL--------TEVEMDH 199
Query: 168 SKKCYVYRARLEETEQYWRAWYE-----------GLSEKFLS----CPVPKLLLLAGTDR 212
++ ++ + + E WR E L E +++ PVPKLL
Sbjct: 200 YREPFL---KPVDREPLWRFPNELPIAGEPANIVALVEAYMNWLHQSPVPKLLFWGTPGA 256
Query: 213 LDRPLTIGQMQGKFQMVVVRHTG---HAIQEDAPEEFASLILNFI 254
L P ++ G H +QED P+ S I ++
Sbjct: 257 LIPPAEAARLAESLPNCKTVDIGPGLHYLQEDNPDLIGSEIARWL 301
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 7/139 (5%)
Query: 6 GPVIFCLHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKSSSENDIDL---SIETMCND 62
GP + LHG ++ G + E V+ DLRG G S + DL S++ +D
Sbjct: 29 GPTLLLLHGWPGFWWEWSKVIGPLAEHYDVIVPDLRGFGDSEKPDLNDLSKYSLDKAADD 88
Query: 63 VLAVLKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLRSLHGLVVVDVVEGTAMASLIHM 122
A+L + E+ +VGH ++ +H +K + + D ++ +
Sbjct: 89 QAALLDALGIEK---AYVVGHDF-AAIVLHKFIRKYSDRVIKAAIFDPIQPDFGPVYFGL 144
Query: 123 QKILSTRMQHFSSIEKAIE 141
+ + F ++ A+E
Sbjct: 145 GHVHESWYSQFHQLDMAVE 163
>pdb|2ROQ|A Chain A, Solution Structure Of The Thiolation-Thioesterase
Di-Domain Of Enterobactin Synthetase Component F
Length = 343
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 6 GPVIFCLHGGGYSGLSFALAAGKIKEKARVVAMD-LRGHGKSSSENDIDLSIETMCNDVL 64
GP +FC H F++ + + + ++ + R +G + ++D +C L
Sbjct: 107 GPTLFCFHPASGFAWQFSVLSRYLDPQWSIIGIQSPRPNGPMQTAANLD----EVCEAHL 162
Query: 65 AVLKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLR 100
A L E P L+G+S+GG++A +AA+ R
Sbjct: 163 ATLLEQQPHGP--YYLLGYSLGGTLAQGIAARLRAR 196
>pdb|3TEJ|A Chain A, Crystal Structure Of A Domain Fragment Involved In Peptide
Natural Product Biosynthesis
pdb|3TEJ|B Chain B, Crystal Structure Of A Domain Fragment Involved In Peptide
Natural Product Biosynthesis
Length = 329
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 6 GPVIFCLHGGGYSGLSFALAAGKIKEKARVVAMD-LRGHGKSSSENDIDLSIETMCNDVL 64
GP +FC H F++ + + + ++ + R +G + ++D +C L
Sbjct: 101 GPTLFCFHPASGFAWQFSVLSRYLDPQWSIIGIQSPRPNGPMQTAANLD----EVCEAHL 156
Query: 65 AVLKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLR 100
A L E P L+G+S+GG++A +AA+ R
Sbjct: 157 ATLLEQQPHGP--YYLLGYSLGGTLAQGIAARLRAR 190
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 108/237 (45%), Gaps = 25/237 (10%)
Query: 34 RVVAMDLRGHGKSSSENDIDLSIETMCNDVLAVLKEMYGEQPPSIVLVGHSMGGSVAVHV 93
RV+AMD+ G GK++ DI+ + + + +K M + SI VG+SMGG+ + V
Sbjct: 67 RVIAMDMLGFGKTAKP-DIEYTQDRRIRHLHDFIKAMNFDGKVSI--VGNSMGGATGLGV 123
Query: 94 AAKKTLRSLHGLVVVDVVEGTAMASLIHMQKILSTRMQHFSSIEKAIEWSVKGGSLRN-- 151
+ LH +V +V + ++ + + L + + + E + VK +L N
Sbjct: 124 SV------LHSELVNALVLMGSAGLVVEIHEDLRPIINYDFTREGMVHL-VK--ALTNDG 174
Query: 152 --LDSARLSIPSTLKYDD-SKKCYVYRARLEETEQYWRAWYEGLSEKFLSCPVPKLLLLA 208
+D A ++ T D+ ++K YV A ++ + +Y+ E VP L++
Sbjct: 175 FKIDDAMINSRYTYATDEATRKAYV--ATMQWIREQGGLFYD--PEFIRKVQVPTLVVQG 230
Query: 209 GTDR---LDRPLTIGQMQGKFQMVVVRHTGHAIQEDAPEEFASLILNFIA-RNRIGP 261
D+ ++ + ++ H GH + PE+FA+ L+F++ R I P
Sbjct: 231 KDDKVVPVETAYKFLDLIDDSWGYIIPHCGHWAMIEHPEDFANATLSFLSLRVDITP 287
>pdb|4DGQ|A Chain A, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|B Chain B, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|C Chain C, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
Length = 280
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 29 IKEKARVVAMDLRGHGKSSSENDIDLSIETMCNDVLAVLKEMYGEQPPSIVLVGHSMGGS 88
+ + RVVA D RGHG+SS D ++ +D AV++++ G + VGHS GG
Sbjct: 50 VNKGFRVVAHDRRGHGRSSQVWD-GHDMDHYADDAAAVVEKL-GTH--GAMHVGHSTGGG 105
Query: 89 VAVHVAAKKTLRSLHGLVVVDVV 111
V A+ R++ V++ V
Sbjct: 106 EVVRYIARHGERNVSKAVLISSV 128
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 7 PVIFCLHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKSSSENDIDLSIETMCNDVLAV 66
PV+F LHG S + + R +A DL G GKS D+D + + A
Sbjct: 31 PVLF-LHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKP-DLDYFFDDHVRYLDAF 88
Query: 67 LKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLR 100
++ + E+ +VLV H G ++ H A + R
Sbjct: 89 IEALGLEE---VVLVIHDWGSALGFHWAKRNPER 119
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 7 PVIFCLHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKSSSENDIDLSIETMCNDVLAV 66
PV+F LHG S + + R +A DL G GK S + D+D + + A
Sbjct: 34 PVLF-LHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGK-SDKPDLDYFFDDHVRYLDAF 91
Query: 67 LKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLR 100
++ + E+ +VLV H G ++ H A + R
Sbjct: 92 IEALGLEE---VVLVIHDWGSALGFHWAKRNPER 122
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 7 PVIFCLHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKSSSENDIDLSIETMCNDVLAV 66
PV+F LHG S + + R +A DL G GK S + D+D + + A
Sbjct: 34 PVLF-LHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGK-SDKPDLDYFFDDHVRYLDAF 91
Query: 67 LKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLR 100
++ + E+ +VLV H G ++ H A + R
Sbjct: 92 IEALGLEE---VVLVIHDWGSALGFHWAKRNPER 122
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 7 PVIFCLHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKSSSENDIDLSIETMCNDVLAV 66
PV+F LHG S + + R +A DL G GK S + D+D + + A
Sbjct: 34 PVLF-LHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGK-SDKPDLDYFFDDHVRYLDAF 91
Query: 67 LKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLR 100
++ + E+ +VLV H G ++ H A + R
Sbjct: 92 IEALGLEE---VVLVIHDWGSALGFHWAKRNPER 122
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 7 PVIFCLHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKSSSENDIDLSIETMCNDVLAV 66
PV+F LHG S + + R +A DL G GK S + D+D + + A
Sbjct: 34 PVLF-LHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGK-SDKPDLDYFFDDHVRYLDAF 91
Query: 67 LKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLR 100
++ + E+ +VLV H G ++ H A + R
Sbjct: 92 IEALGLEE---VVLVIHDWGSALGFHWAKRNPER 122
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 7 PVIFCLHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKSSSENDIDLSIETMCNDVLAV 66
PV+F LHG S + + R +A DL G GK S + D+D + + A
Sbjct: 34 PVLF-LHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGK-SDKPDLDYFFDDHVRYLDAF 91
Query: 67 LKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLR 100
++ + E+ +VLV H G ++ H A + R
Sbjct: 92 IEALGLEE---VVLVIHDWGSALGFHWAKRNPER 122
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 7 PVIFCLHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKSSSENDIDLSIETMCNDVLAV 66
PV+F LHG S + + R +A DL G GK S + D+D + + A
Sbjct: 34 PVLF-LHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGK-SDKPDLDYFFDDHVRYLDAF 91
Query: 67 LKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLR 100
++ + E+ +VLV H G ++ H A + R
Sbjct: 92 IEALGLEE---VVLVIHDWGSALGFHWAKRNPER 122
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 102/269 (37%), Gaps = 31/269 (11%)
Query: 7 PVIFCLHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKSSSENDIDLSIETMCNDVLAV 66
PV+F LHG S + + R +A DL G GK S + D+D + + A
Sbjct: 31 PVLF-LHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGK-SDKPDLDYFFDDHVRYLDAF 88
Query: 67 LKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLRSLHGLVVVDVVEGTAMASLIHMQKIL 126
++ + E+ +VLV H G ++ H AK+ + G+ ++ + + + +
Sbjct: 89 IEALGLEE---VVLVIHDWGSALGFH-WAKRNPERVKGIACMEFIR--PIPTWDEWPEFA 142
Query: 127 STRMQHFSSIEKAIEWSVKGGSLRN--LDSARLSIPSTLKYDDSKKCYVYRARLEETEQY 184
Q F + + E + + L + + ++ D ++ ++ + + E
Sbjct: 143 RETFQAFRTADVGRELIIDQNAFIEGVLPKCVVRPLTEVEMDHYREPFL---KPVDREPL 199
Query: 185 WRAWYE-----------GLSEKFLS----CPVPKLLLLAGTDRLDRPLTIGQMQGKFQMV 229
WR E L E +++ PVPKLL L P ++
Sbjct: 200 WRFPNEIPIAGEPANIVALVEAYMNWLHQSPVPKLLFWGTPGVLIPPAEAARLAESLPNC 259
Query: 230 VVRHTG---HAIQEDAPEEFASLILNFIA 255
G H +QED P+ S I ++
Sbjct: 260 KTVDIGPGLHYLQEDNPDLIGSEIARWLP 288
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 34.3 bits (77), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 7 PVIFCLHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKSSSENDIDLSIETMCNDVLAV 66
PV+F LHG S + + R +A DL G GK S + D+D + + A
Sbjct: 34 PVLF-LHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGK-SDKPDLDYFFDDHVRYLDAF 91
Query: 67 LKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLR 100
++ + E+ +VLV H G ++ H A + R
Sbjct: 92 IEAVGLEE---VVLVIHDWGSALGFHWAKRNPER 122
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 34.3 bits (77), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 12/82 (14%)
Query: 34 RVVAMDLRGHGKSS---SENDIDLSIETMCNDVLAVLKEMYGEQPPSIVLVGHSM-GGSV 89
R +A D RG G+S + ND D T +D+ +++ + + LVG SM GG V
Sbjct: 48 RTIAFDRRGFGRSDQPWTGNDYD----TFADDIAQLIEHL---DLKEVTLVGFSMGGGDV 100
Query: 90 AVHVAAKKTLRSLHGLVVVDVV 111
A ++A + R + GLV++ V
Sbjct: 101 ARYIARHGSAR-VAGLVLLGAV 121
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 34.3 bits (77), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 12/82 (14%)
Query: 34 RVVAMDLRGHGKSS---SENDIDLSIETMCNDVLAVLKEMYGEQPPSIVLVGHSM-GGSV 89
R +A D RG G+S + ND D T +D+ +++ + ++ + LVG SM GG V
Sbjct: 48 RTIAFDRRGFGRSDQPWTGNDYD----TFADDIAQLIEHLDLKE---VTLVGFSMGGGDV 100
Query: 90 AVHVAAKKTLRSLHGLVVVDVV 111
A ++A + R + GLV++ V
Sbjct: 101 ARYIARHGSAR-VAGLVLLGAV 121
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 12/82 (14%)
Query: 34 RVVAMDLRGHGKSS---SENDIDLSIETMCNDVLAVLKEMYGEQPPSIVLVGHSM-GGSV 89
R +A D RG G+S + ND D T +D+ +++ + + LVG SM GG V
Sbjct: 48 RTIAFDRRGFGRSDQPWTGNDYD----TFADDIAQLIEHL---DLKEVTLVGFSMGGGDV 100
Query: 90 AVHVAAKKTLRSLHGLVVVDVV 111
A ++A + R + GLV++ V
Sbjct: 101 ARYIARHGSAR-VAGLVLLGAV 121
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 34.3 bits (77), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 12/82 (14%)
Query: 34 RVVAMDLRGHGKSS---SENDIDLSIETMCNDVLAVLKEMYGEQPPSIVLVGHSM-GGSV 89
R +A D RG G+S + ND D T +D+ +++ + ++ + LVG SM GG V
Sbjct: 48 RTIAFDRRGFGRSDQPWTGNDYD----TFADDIAQLIEHLDLKE---VTLVGFSMGGGDV 100
Query: 90 AVHVAAKKTLRSLHGLVVVDVV 111
A ++A + R + GLV++ V
Sbjct: 101 ARYIARHGSAR-VAGLVLLGAV 121
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 34.3 bits (77), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 12/82 (14%)
Query: 34 RVVAMDLRGHGKSS---SENDIDLSIETMCNDVLAVLKEMYGEQPPSIVLVGHSM-GGSV 89
R +A D RG G+S + ND D T +D+ +++ + + LVG SM GG V
Sbjct: 48 RTIAFDRRGFGRSDQPWTGNDYD----TFADDIAQLIEHL---DLKEVTLVGFSMGGGDV 100
Query: 90 AVHVAAKKTLRSLHGLVVVDVV 111
A ++A + R + GLV++ V
Sbjct: 101 ARYIARHGSAR-VAGLVLLGAV 121
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
Length = 310
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 8 VIFCLHG-GGYSGLSFALAAGKIKEKARVVAMDLRGHGKSSSEND-IDLSIETMCNDVLA 65
V CLHG +S L + + ARV+A D G GKS D D + E N +LA
Sbjct: 49 VFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLA 108
Query: 66 VLKEMYGEQPPSIVLVGHSMGGSVAVHVAAK-----KTLRSLHGLVVVDVVEGTAMASLI 120
+++ + +I LV GG + + + K L ++ ++ D V A ++ +
Sbjct: 109 LIERLDLR---NITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTDPVTQPAFSAFV 165
>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
Length = 310
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 8 VIFCLHG-GGYSGLSFALAAGKIKEKARVVAMDLRGHGKSSSEND-IDLSIETMCNDVLA 65
V CLHG +S L + + ARV+A D G GKS D D + E N +LA
Sbjct: 49 VFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLA 108
Query: 66 VLKEMYGEQPPSIVLVGHSMGGSVAVHVAAK-----KTLRSLHGLVVVDVVEGTAMASLI 120
+++ + +I LV GG + + + K L ++ ++ D V A ++ +
Sbjct: 109 LIERLDLR---NITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAXLMTDPVTQPAFSAFV 165
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At Ph
6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme To
Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 8 VIFCLHG-GGYSGLSFALAAGKIKEKARVVAMDLRGHGKSSSEND-IDLSIETMCNDVLA 65
V CLHG +S L + + ARV+A D G GKS D D + E N +LA
Sbjct: 49 VFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLA 108
Query: 66 VLKEMYGEQPPSIVLVGHSMGGSVAVHVAAK-----KTLRSLHGLVVVDVVEGTAMASLI 120
+++ + +I LV GG + + + K L ++ ++ D V A ++ +
Sbjct: 109 LIERLDLR---NITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTDPVTQPAFSAFV 165
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration Of
Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 8 VIFCLHG-GGYSGLSFALAAGKIKEKARVVAMDLRGHGKSSSEND-IDLSIETMCNDVLA 65
V CLHG +S L + + ARV+A D G GKS D D + E N +LA
Sbjct: 49 VFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLA 108
Query: 66 VLKEMYGEQPPSIVLVGHSMGGSVAVHVAAK-----KTLRSLHGLVVVDVVEGTAMASLI 120
+++ + +I LV GG + + + K L ++ ++ D V A ++ +
Sbjct: 109 LIERLDLR---NITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTDPVTQPAFSAFV 165
>pdb|2DHD|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
Length = 310
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 8 VIFCLHG-GGYSGLSFALAAGKIKEKARVVAMDLRGHGKSSSEND-IDLSIETMCNDVLA 65
V CLHG +S L + + ARV+A D G GKS D D + E N +LA
Sbjct: 49 VFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLA 108
Query: 66 VLKEMYGEQPPSIVLVGHSMGGSVAVHVAAK-----KTLRSLHGLVVVDVVEGTAMASLI 120
+++ + +I LV GG + + + K L ++ ++ D V A ++ +
Sbjct: 109 LIERLDLR---NITLVVQXWGGFLGLTLPMADPSRFKRLIIMNACLMTDPVTQPAFSAFV 165
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 8 VIFCLHG-GGYSGLSFALAAGKIKEKARVVAMDLRGHGKSSSEND-IDLSIETMCNDVLA 65
V CLHG +S L + + ARV+A D G GKS D D + E N +LA
Sbjct: 49 VFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLA 108
Query: 66 VLKEMYGEQPPSIVLVGHSMGGSVAVHVAAK-----KTLRSLHGLVVVDVVEGTAMASLI 120
+++ + +I LV GG + + + K L ++ ++ D V A ++ +
Sbjct: 109 LIERLDLR---NITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTDPVTQPAFSAFV 165
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 11/71 (15%)
Query: 34 RVVAMDLRGHGKSS---SENDIDLSIETMCNDVLAVLKEMYGEQPPSIVLVGHSMGGS-V 89
RV+A D RGHG+SS S ND+D T +D+ +++ + VL G S GG V
Sbjct: 48 RVIAHDRRGHGRSSQPWSGNDMD----TYADDLAQLIEHL---DLRDAVLFGFSTGGGEV 100
Query: 90 AVHVAAKKTLR 100
A ++ T R
Sbjct: 101 ARYIGRHGTAR 111
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
Length = 279
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 3 GTEGPVIFCLHGGGYSGLSFALAAGKI-KEKARVVAMDLRGHGKSSSENDIDLSIETMCN 61
G+ PV+ +HG G S+ ++ + RV+ D RG G SS N +T
Sbjct: 21 GSGQPVV-LIHGYPLDGHSWERQTRELLAQGYRVITYDRRGFGGSSKVN-TGYDYDTFAA 78
Query: 62 DVLAVLKEMYGEQPPSIVLVGHSMG-GSVAVHVA 94
D+ VL+ + +VLVG SMG G +A +VA
Sbjct: 79 DLHTVLETL---DLRDVVLVGFSMGTGELARYVA 109
>pdb|3BF8|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF8|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Query: 9 IFCLHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKSSSENDIDLSIETMCNDVLAVLK 68
I +HG S + + A + ++ +D+R HG S E ++ M D++ L
Sbjct: 19 IVLVHGLFGSLDNLGVLARDLVNDHNIIQVDVRNHGLSPREPV--MNYPAMAQDLVDTLD 76
Query: 69 EMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLRSLHGLVVVDV 110
+Q +GHSMGG + + A R + LV +D+
Sbjct: 77 ---AQQIDKATFIGHSMGGKAVMALTALAPDR-IDKLVAIDI 114
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Query: 9 IFCLHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKSSSENDIDLSIETMCNDVLAVLK 68
I +HG S + + A + ++ +D+R HG S E ++ M D++ L
Sbjct: 19 IVLVHGLFGSLDNLGVLARDLVNDHNIIQVDVRNHGLSPREPV--MNYPAMAQDLVDTLD 76
Query: 69 EMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLRSLHGLVVVDV 110
+ Q +GHSMGG + + A R + LV +D+
Sbjct: 77 AL---QIDKATFIGHSMGGKAVMALTALAPDR-IDKLVAIDI 114
>pdb|2RON|A Chain A, The External Thioesterase Of The Surfactin-Synthetase
pdb|2K2Q|B Chain B, Complex Structure Of The External Thioesterase Of The
Surfactin-Synthetase With A Carrier Domain
Length = 242
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 3 GTEGPVIFCL-HGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKSSSENDIDLSIETMCN 61
+E + C GGYS SF ++ + ++A + GHG + + DL T
Sbjct: 10 ASEKTQLICFPFAGGYSA-SFRPLHAFLQGECEMLAAEPPGHGTNQTSAIEDLEELT--- 65
Query: 62 DVLAVLKEMYGEQPPSIVLVGHSMGGSVAVHVAAK 96
D+ + ++P VL GHSMGG + +A K
Sbjct: 66 DLYKQELNLRPDRP--FVLFGHSMGGMITFRLAQK 98
>pdb|1G5F|A Chain A, Structure Of Linb Complexed With 1,2-Dichloroethane
pdb|1G4H|A Chain A, Linb Complexed With Butan-1-Ol
pdb|1G42|A Chain A, Structure Of 1,3,4,6-Tetrachloro-1,4-Cyclohexadiene
Hydrolase (Linb) From Sphingomonas Paucimobilis
Complexed With 1,2-Dichloropropane
Length = 296
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 200 PVPKLLLLAGTDRLDRPLTIGQMQG-----KFQMVVVRHTGHAIQEDAPEEFASLILNFI 254
P+PKL + A L T G+M+ Q + H IQED+P+E + I F+
Sbjct: 235 PIPKLFINAEPGAL----TTGRMRDFCRTWPNQTEITVAGAHFIQEDSPDEIGAAIAAFV 290
Query: 255 ARNR 258
R R
Sbjct: 291 XRLR 294
>pdb|3E0X|A Chain A, The Crystal Structure Of A Lipase-Esterase Related Protein
From Clostridium Acetobutylicum Atcc 824
pdb|3E0X|B Chain B, The Crystal Structure Of A Lipase-Esterase Related Protein
From Clostridium Acetobutylicum Atcc 824
Length = 245
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 12 LHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKSSSE--NDIDLSIETMCNDVLAVLKE 69
+HG G L K E + +DL+GHG+S + + + I+ + N +
Sbjct: 22 VHGSG-CNLKIFGELEKYLEDYNCILLDLKGHGESKGQCPSTVYGYIDNVAN---FITNS 77
Query: 70 MYGEQPPSIVLVGHSMGGSVAVHVAAKK 97
+ +I L+G+S GG++ + VA KK
Sbjct: 78 EVTKHQKNITLIGYSXGGAIVLGVALKK 105
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 31 EKARVVAMDLRGHGKSSSENDIDLSIETMCNDVLAVLKEMYGEQPP---SIVLVGHSMGG 87
E V D GHG S + + ++++ D A+L Y + P +I LVGHS GG
Sbjct: 74 ENIASVRFDFNGHGDSDGKFE-NMTVLNEIEDANAILN--YVKTDPHVRNIYLVGHSQGG 130
Query: 88 SVAVHVA 94
VA +A
Sbjct: 131 VVASMLA 137
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 11/78 (14%)
Query: 34 RVVAMDLRGHGKS---SSENDIDLSIETMCNDVLAVLKEMYGEQPPSIVLVGHSM-GGSV 89
RV+A D RGHG+S S+ +D+D T DV A+ + + V +GHS GG V
Sbjct: 50 RVIAHDRRGHGRSDQPSTGHDMD----TYAADVAALTEAL---DLRGAVHIGHSTGGGEV 102
Query: 90 AVHVAAKKTLRSLHGLVV 107
A +VA + R ++V
Sbjct: 103 ARYVARAEPGRVAKAVLV 120
>pdb|1IZ7|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26 At
1.6 A Resolution
pdb|1IZ8|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26
With 1,3-Propanediol, A Product Of Debromidation Of
Dibrompropane, At 2.0a Resolution
pdb|1K5P|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.8a Resolution
pdb|1K63|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis With Ut26
2-Bromo-2-Propene-1-Ol At 1.8a Resolution
pdb|1K6E|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis Ut26 With 1,2-Propanediol
(Product Of Dehalogenation Of 1,2-Dibromopropane) At
1.85a
Length = 295
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 200 PVPKLLLLAGTDRLDRPLTIGQMQG-----KFQMVVVRHTGHAIQEDAPEEFASLILNFI 254
P+PKL + A L T G+M+ Q + H IQED+P+E + I F+
Sbjct: 234 PIPKLFINAEPGAL----TTGRMRDFCRTWPNQTEITVAGAHFIQEDSPDEIGAAIAAFV 289
Query: 255 ARNR 258
R R
Sbjct: 290 RRLR 293
>pdb|1MJ5|A Chain A, Linb (Haloalkane Dehalogenase) From Sphingomonas
Paucimobilis Ut26 At Atomic Resolution
Length = 302
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 200 PVPKLLLLAGTDRLDRPLTIGQMQG-----KFQMVVVRHTGHAIQEDAPEEFASLILNFI 254
P+PKL + A L T G+M+ Q + H IQED+P+E + I F+
Sbjct: 235 PIPKLFINAEPGAL----TTGRMRDFCRTWPNQTEITVAGAHFIQEDSPDEIGAAIAAFV 290
Query: 255 ARNR 258
R R
Sbjct: 291 RRLR 294
>pdb|1CV2|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.6 A Resolution
pdb|1D07|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 With 1,3-Propanediol, A Product Of
Debromidation Of Dibrompropane, At 2.0a Resolution
pdb|2BFN|A Chain A, The Crystal Structure Of The Complex Of The Haloalkane
Dehalogenase Linb With The Product Of Dehalogenation
Reaction 1,2-Dichloropropane
Length = 296
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 200 PVPKLLLLAGTDRLDRPLTIGQMQG-----KFQMVVVRHTGHAIQEDAPEEFASLILNFI 254
P+PKL + A L T G+M+ Q + H IQED+P+E + I F+
Sbjct: 235 PIPKLFINAEPGAL----TTGRMRDFCRTWPNQTEITVAGAHFIQEDSPDEIGAAIAAFV 290
Query: 255 ARNR 258
R R
Sbjct: 291 RRLR 294
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
Query: 5 EGPVIFCLHGGGYSGLSFALAAGKIKEKA-RVVAMDLRGHGKSSSENDIDLSIETMCNDV 63
G I HG + ++ + + RV+A+D G KSS S + + +
Sbjct: 45 NGRTILLXHGKNFCAGTWERTIDVLADAGYRVIAVDQVGFCKSSKPAHYQYSFQQLAANT 104
Query: 64 LAVLKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLRSLHGLVVVDVV 111
A+L+ + G S+ +GHS GG +A A R + LV+V+ +
Sbjct: 105 HALLERL-GVARASV--IGHSXGGXLATRYALLYP-RQVERLVLVNPI 148
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 64 LAVLKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLRSLHGLVV 107
LA L YG +P ++V GHS G A HVA TL LVV
Sbjct: 608 LAELWRSYGVEPAAVV--GHSQGEIAAAHVAGALTLEDAAKLVV 649
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 3 GTEGPVIFCLHGGGYSGLSFALAAGKIKEKA-RVVAMDLRGHGKSSSENDIDLSIETMCN 61
GT PV+ +HG SG S+ + E RV+ D RG GKSS + +T +
Sbjct: 25 GTGKPVV-LIHGWPLSGRSWEYQVPALVEAGYRVITYDRRGFGKSSQPWE-GYEYDTFTS 82
Query: 62 DVLAVLKEMYGEQPPSIVLVGHSM-GGSVAVHVAAKKTLR 100
D+ +L+++ + ++ LVG S GG VA +++ T R
Sbjct: 83 DLHQLLEQL---ELQNVTLVGFSXGGGEVARYISTYGTDR 119
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 31 EKARVVAMDLRGHGKSSSENDIDLSIETMCNDVLAVLKEMYGEQPP---SIVLVGHSMGG 87
E V D GHG S + + ++++ D A+L Y + P +I LVGH+ GG
Sbjct: 74 ENIASVRFDFNGHGDSDGKFE-NMTVLNEIEDANAILN--YVKTDPHVRNIYLVGHAQGG 130
Query: 88 SVAVHVA 94
VA +A
Sbjct: 131 VVASMLA 137
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 31 EKARVVAMDLRGHGKSSSENDIDLSIETMCNDVLAVLKEMYGEQPP---SIVLVGHSMGG 87
E V D GHG S + + ++++ D A+L Y + P +I LVGH+ GG
Sbjct: 74 ENIASVRFDFNGHGDSDGKFE-NMTVLNEIEDANAILN--YVKTDPHVRNIYLVGHAQGG 130
Query: 88 SVAVHVA 94
VA +A
Sbjct: 131 VVASMLA 137
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 105/269 (39%), Gaps = 33/269 (12%)
Query: 8 VIFCLHGGGYSGLSFALAAGKIKEKAR---VVAMDLRGHGKSSSENDIDLSIETMCNDVL 64
+ LHGGG S+ + I AR V+A+D G+G S + N
Sbjct: 58 TVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAE-----HGQFNRYA 112
Query: 65 AV-LKEMYGEQPPSIV-LVGHSMGGSVAVHVAAKKTLRSLHGLVVVDVVEGTAMASLIHM 122
A+ LK ++ + V LVG+S+GG AV A R+ G +V+ G ++
Sbjct: 113 AMALKGLFDQLGLGRVPLVGNSLGGGTAVRFALDYPARA--GRLVLMGPGGLSINLFAPD 170
Query: 123 QKILSTRMQHFS------SIEKAIEWSVKGGSL--RNLDSARLSIPSTLKYDDSKKCY-- 172
R+ FS ++E + V +L L R ++ ST + + +
Sbjct: 171 PTEGVKRLSKFSVAPTRENLEAFLRVMVYDKNLITPELVDQRFALASTPESLTATRAMGK 230
Query: 173 VYRARLEETEQYWRAWYEGLSEKFLSCPVPKLLLLAGTDR---LDRPLTIGQMQGKFQMV 229
+ E WR Y L PV LL+ DR LD L + + Q+
Sbjct: 231 SFAGADFEAGMMWREVYR------LRQPV--LLIWGREDRVNPLDGALVALKTIPRAQLH 282
Query: 230 VVRHTGHAIQEDAPEEFASLILNFIARNR 258
V GH +Q + +EF L + F+ R
Sbjct: 283 VFGQCGHWVQVEKFDEFNKLTIEFLGGGR 311
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 64 LAVLKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLRSLHGLVVV 108
LA L +G +P ++V GHS G A HVA TL LV V
Sbjct: 624 LAALWRSHGVEPAAVV--GHSQGEIAAAHVAGALTLEDAAKLVAV 666
>pdb|2PNZ|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Udp And Gmp
pdb|2PO0|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Adp In Double Conformation
pdb|2PO1|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With A Single Stranded 10-Mer Poly(A) Rna
pdb|2PO2|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Cdp
Length = 249
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 20 LSFALAAGKIKEKARVVAMDLRGHGKSSSENDIDLSIETMCNDVLAVLKEMYGEQPPSIV 79
L A AAGKI+ + + +DL + E D+ ++I + ND+ + + Y + I
Sbjct: 158 LVAACAAGKIEGE---IVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDGYLTKDEFIE 214
Query: 80 LVGHSMGGSVAVHVAAKKTLRSLHGLVVVDVVEGT 114
V ++ G+ AV+ ++ L+ + L + VEG+
Sbjct: 215 AVKLAIKGAKAVYQKQREALKEKY-LKIAQEVEGS 248
>pdb|1R3D|A Chain A, Crystal Structure Of Protein Vc1974 From Vibrio Cholerae,
Pfam Abhydrolase
Length = 264
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 7 PVIFCLHGGGYSGLSFALAAGKI-KEKARVVAMDLRGHGKSSSENDIDLSIETMCNDVLA 65
P++ +HG SG + + + + + +DL GHG ++ E D E +
Sbjct: 17 PLVVLVHGLLGSGADWQPVLSHLARTQCAALTLDLPGHG-TNPERHCDNFAEAVEXIEQT 75
Query: 66 VLKEMYGEQPPSIVLVGHSMGGSVAVHVAAKKTLRSL 102
V + E P ++LVG+S+GG + H A+ L
Sbjct: 76 VQAHVTSEVP--VILVGYSLGGRLIXHGLAQGAFSRL 110
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 194 EKFLSCPVPKLLLLAGTDRLDRPLTIGQMQGKFQMVVVRHTG---HAIQEDAPEEFASLI 250
E + P+PKLL A L + + + VR G H +QED P I
Sbjct: 230 EWLXASPIPKLLFHAEPGALAPKPVVDYLSENVPNLEVRFVGAGTHFLQEDHPHLIGQGI 289
Query: 251 LNFIARNRIGPH 262
+++ RN+ PH
Sbjct: 290 ADWLRRNK--PH 299
>pdb|1TIA|A Chain A, An Unusual Buried Polar Cluster In A Family Of Fungal
Lipases
Length = 279
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 61 NDVLAVLKEMYGEQPP-SIVLVGHSMGGSVAVHVA 94
+D++ LKE+ + P +V+VGHS+G +VA A
Sbjct: 121 DDIIKELKEVVAQNPNYELVVVGHSLGAAVATLAA 155
>pdb|1AZW|A Chain A, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
pdb|1AZW|B Chain B, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
Length = 313
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 6 GPVIFCLHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKSSSENDIDLSIETMCNDVLA 65
G + LHGG G + + K R+V D RG G+S+ D+ ++ D++A
Sbjct: 34 GKPVVMLHGGPGGGCNDKMRRFHDPAKYRIVLFDQRGSGRSTPHADL---VDNTTWDLVA 90
Query: 66 VLKEM 70
++ +
Sbjct: 91 DIERL 95
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 3 GTEGPVIFCLHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKS 46
G +GP++ +HG G + + ++ ++ V+A DL G G+S
Sbjct: 27 GGQGPLVMLVHGFGQTWYEWHQLMPELAKRFTVIAPDLPGLGQS 70
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 105/269 (39%), Gaps = 33/269 (12%)
Query: 8 VIFCLHGGGYSGLSFALAAGKIKEKAR---VVAMDLRGHGKSSSENDIDLSIETMCNDVL 64
+ LHGGG S+ + I AR V+A+D G+G S + N
Sbjct: 38 TVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAE-----HGQFNRYA 92
Query: 65 AV-LKEMYGEQPPSIV-LVGHSMGGSVAVHVAAKKTLRSLHGLVVVDVVEGTAMASLIHM 122
A+ LK ++ + V LVG+++GG AV A R+ G +V+ G ++
Sbjct: 93 AMALKGLFDQLGLGRVPLVGNALGGGTAVRFALDYPARA--GRLVLMGPGGLSINLFAPD 150
Query: 123 QKILSTRMQHFS------SIEKAIEWSVKGGSL--RNLDSARLSIPSTLKYDDSKKCY-- 172
R+ FS ++E + V +L L R ++ ST + + +
Sbjct: 151 PTEGVKRLSKFSVAPTRENLEAFLRVMVYDKNLITPELVDQRFALASTPESLTATRAMGK 210
Query: 173 VYRARLEETEQYWRAWYEGLSEKFLSCPVPKLLLLAGTDR---LDRPLTIGQMQGKFQMV 229
+ E WR Y L PV LL+ DR LD L + + Q+
Sbjct: 211 SFAGADFEAGMMWREVYR------LRQPV--LLIWGREDRVNPLDGALVALKTIPRAQLH 262
Query: 230 VVRHTGHAIQEDAPEEFASLILNFIARNR 258
V GH +Q + +EF L + F+ R
Sbjct: 263 VFGQCGHWVQVEKFDEFNKLTIEFLGGGR 291
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 3 GTEGPVIFCLHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKS 46
G +GP++ +HG G + + ++ ++ V+A DL G G+S
Sbjct: 27 GGQGPLVMLVHGFGQTWYEWHQLMPELAKRFTVIAPDLPGLGQS 70
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 3 GTEGPVIFCLHGGGYSGLSFALAAGKIKEKARVVAMDLRGHGKS 46
G +GP++ +HG G + + ++ ++ V+A DL G G+S
Sbjct: 27 GGQGPLVMLVHGFGQTWYEWHQLMPELAKRFTVIAPDLPGLGQS 70
>pdb|3LCR|A Chain A, Thioesterase From Tautomycetin Biosynthhetic Pathway
pdb|3LCR|B Chain B, Thioesterase From Tautomycetin Biosynthhetic Pathway
Length = 319
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 17 YSGLSFALAAGKIKEKARVVAMDLRG-HGKSSSENDIDLSIETMCNDVLAVLKEMYGEQP 75
YS L+ L AG+ RV A+ G HG + + + + ++ + V A + + GE
Sbjct: 99 YSRLAEELDAGR-----RVSALVPPGFHGGQALPATLTVLVRSLADVVQAEVAD--GE-- 149
Query: 76 PSIVLVGHSMGGSVAVHVAAKKTLRSL--HGLVVVD 109
L GHS GG VA VA + R L G+V++D
Sbjct: 150 --FALAGHSSGGVVAYEVARELEARGLAPRGVVLID 183
>pdb|2X4H|A Chain A, Crystal Structure Of The Hypothetical Protein Sso2273 From
Sulfolobus Solfataricus
pdb|2X4H|B Chain B, Crystal Structure Of The Hypothetical Protein Sso2273 From
Sulfolobus Solfataricus
pdb|2X4H|C Chain C, Crystal Structure Of The Hypothetical Protein Sso2273 From
Sulfolobus Solfataricus
pdb|2X4H|D Chain D, Crystal Structure Of The Hypothetical Protein Sso2273 From
Sulfolobus Solfataricus
Length = 139
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 243 PEEFASLILNFIARNRIGPHGVEIP 267
PEE + N++ + PHG+EIP
Sbjct: 114 PEEIIDKLYNYLGKPSYCPHGLEIP 138
>pdb|1TIC|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1TIC|B Chain B, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1LGY|A Chain A, Lipase Ii From Rhizopus Niveus
pdb|1LGY|B Chain B, Lipase Ii From Rhizopus Niveus
pdb|1LGY|C Chain C, Lipase Ii From Rhizopus Niveus
Length = 269
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 55 SIETMCNDVLAVLKEMYGEQPP-SIVLVGHSMGGSVAV 91
S E + ND V++E P +++ GHS+GG+ A+
Sbjct: 115 SYEQVVNDYFPVVQEQLTAHPTYKVIVTGHSLGGAQAL 152
>pdb|2O2H|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With
1,2-Dichloroethane
pdb|2O2I|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With 1,3-Propandiol
Length = 300
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 236 HAIQEDAPEEFASLILNFIARNR 258
H +QED+PEE + I F+ R R
Sbjct: 273 HFVQEDSPEEIGAAIAQFVRRLR 295
>pdb|4G9I|A Chain A, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|B Chain B, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|C Chain C, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|D Chain D, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|E Chain E, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|F Chain F, Crystal Structure Of T.Kodakarensis Hypf
Length = 772
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 25/38 (65%)
Query: 39 DLRGHGKSSSENDIDLSIETMCNDVLAVLKEMYGEQPP 76
+LRG+ K+ + +++ +E D+ A ++++Y ++PP
Sbjct: 29 NLRGYVKNLGDAGVEIVVEGREEDIEAFIEDLYKKKPP 66
>pdb|2QVB|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
pdb|2QVB|B Chain B, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
Length = 297
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 236 HAIQEDAPEEFASLILNFIARNR 258
H +QED+PEE + I F+ R R
Sbjct: 271 HFVQEDSPEEIGAAIAQFVRRLR 293
>pdb|4FHZ|A Chain A, Crystal Structure Of A Carboxyl Esterase At 2.0 Angstrom
Resolution
Length = 285
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 47 SSENDIDLSIETMCNDVLAVLKEMYGEQ---PPSIVLVGHSMGGSVAVHVAAKKT 98
SSE + D+ A L E E+ P ++ LVG S G +A+HVA ++
Sbjct: 125 SSETAAAEGMAAAARDLDAFLDERLAEEGLPPEALALVGFSQGTMMALHVAPRRA 179
>pdb|1H4F|A Chain A, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|B Chain B, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|C Chain C, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|D Chain D, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
Length = 406
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 14/71 (19%)
Query: 40 LRGHGKSSSENDIDLSIETMCNDVLAVLKEMYGEQPPSI----VLVGHSMGGSVAVHVAA 95
L HG S+ D+ LA ++E++G++ P+I + GHS+ G+ V A
Sbjct: 295 LNSHGTSTPVGDVK---------ELAAIREVFGDKSPAISATRAMTGHSL-GAAGVQEAI 344
Query: 96 KKTLRSLHGLV 106
L HG +
Sbjct: 345 YSLLMLEHGFI 355
>pdb|1FJ4|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ8|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1G5X|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|2BUH|A Chain A, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|B Chain B, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|C Chain C, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|D Chain D, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUI|A Chain A, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|B Chain B, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|C Chain C, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|D Chain D, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2AQ7|A Chain A, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|B Chain B, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|C Chain C, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|D Chain D, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQB|A Chain A, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|B Chain B, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|C Chain C, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|D Chain D, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2VB7|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB8|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB9|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VBA|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
Length = 406
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 14/71 (19%)
Query: 40 LRGHGKSSSENDIDLSIETMCNDVLAVLKEMYGEQPPSI----VLVGHSMGGSVAVHVAA 95
L HG S+ D+ LA ++E++G++ P+I + GHS+ G+ V A
Sbjct: 295 LNSHGTSTPVGDVK---------ELAAIREVFGDKSPAISATKAMTGHSL-GAAGVQEAI 344
Query: 96 KKTLRSLHGLV 106
L HG +
Sbjct: 345 YSLLMLEHGFI 355
>pdb|2VB7|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
Length = 406
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 14/71 (19%)
Query: 40 LRGHGKSSSENDIDLSIETMCNDVLAVLKEMYGEQPPSI----VLVGHSMGGSVAVHVAA 95
L HG S+ D+ LA ++E++G++ P+I + GHS+ G+ V A
Sbjct: 295 LNSHGTSTPVGDVK---------ELAAIREVFGDKSPAISATKAMTGHSL-GAAGVQEAI 344
Query: 96 KKTLRSLHGLV 106
L HG +
Sbjct: 345 YSLLMLEHGFI 355
>pdb|2BYW|A Chain A, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|B Chain B, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|C Chain C, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|D Chain D, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYX|A Chain A, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|B Chain B, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|C Chain C, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|D Chain D, Kas I Lys328ala Mutant In Complex With Fatty Acid
Length = 418
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 14/71 (19%)
Query: 40 LRGHGKSSSENDIDLSIETMCNDVLAVLKEMYGEQPPSI----VLVGHSMGGSVAVHVAA 95
L HG S+ D+ LA ++E++G++ P+I + GHS+ G+ V A
Sbjct: 307 LNSHGTSTPVGDVK---------ELAAIREVFGDKSPAISATAAMTGHSL-GAAGVQEAI 356
Query: 96 KKTLRSLHGLV 106
L HG +
Sbjct: 357 YSLLMLEHGFI 367
>pdb|1DD8|A Chain A, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|B Chain B, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|C Chain C, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|D Chain D, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|2CDH|A Chain A, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|B Chain B, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|C Chain C, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|D Chain D, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|E Chain E, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|F Chain F, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 406
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 14/71 (19%)
Query: 40 LRGHGKSSSENDIDLSIETMCNDVLAVLKEMYGEQPPSI----VLVGHSMGGSVAVHVAA 95
L HG S+ D+ LA ++E++G++ P+I + GHS+ G+ V A
Sbjct: 295 LNSHGTSTPVGDVK---------ELAAIREVFGDKSPAISATKAMTGHSL-GAAGVQEAI 344
Query: 96 KKTLRSLHGLV 106
L HG +
Sbjct: 345 YSLLMLEHGFI 355
>pdb|1F91|A Chain A, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|B Chain B, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|C Chain C, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|D Chain D, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|2CF2|A Chain A, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|J Chain J, Architecture Of Mammalian Fatty Acid Synthase
Length = 406
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 14/71 (19%)
Query: 40 LRGHGKSSSENDIDLSIETMCNDVLAVLKEMYGEQPPSI----VLVGHSMGGSVAVHVAA 95
L HG S+ D+ LA ++E++G++ P+I + GHS+ G+ V A
Sbjct: 295 LNSHGTSTPVGDVK---------ELAAIREVFGDKSPAISATKAMTGHSL-GAAGVQEAI 344
Query: 96 KKTLRSLHGLV 106
L HG +
Sbjct: 345 YSLLMLEHGFI 355
>pdb|1EK4|A Chain A, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|B Chain B, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|C Chain C, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|D Chain D, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
Length = 418
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 14/71 (19%)
Query: 40 LRGHGKSSSENDIDLSIETMCNDVLAVLKEMYGEQPPSI----VLVGHSMGGSVAVHVAA 95
L HG S+ D+ LA ++E++G++ P+I + GHS+ G+ V A
Sbjct: 307 LNSHGTSTPVGDVK---------ELAAIREVFGDKSPAISATKAMTGHSL-GAAGVQEAI 356
Query: 96 KKTLRSLHGLV 106
L HG +
Sbjct: 357 YSLLMLEHGFI 367
>pdb|3FSG|D Chain D, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 3 GTEGPVIFCLHGGGYSGLSFALAAGKIKE--KARVVAMDLRGHGKSS--SENDIDLSIET 58
G+ P+IF LHG S L + + + + +DL G G S S + D +ET
Sbjct: 19 GSGTPIIF-LHGLSLDKQSTCLFFEPLSNVGQYQRIYLDLPGXGNSDPISPSTSDNVLET 77
Query: 59 MCNDVLAVLKEMYGEQPPSIVLVGHSMGGSVAVHVA 94
+ + ++E+ G + +L GHS GG +A +A
Sbjct: 78 L----IEAIEEIIGAR--RFILYGHSYGGYLAQAIA 107
>pdb|1P9R|A Chain A, Crystal Structure Of Vibrio Cholerae Putative Ntpase Epse
pdb|1P9W|A Chain A, Crystal Structure Of Vibrio Cholerae Putative Ntpase Epse
Length = 418
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/66 (21%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 83 HSMGGSVAVHVAAKKTLRSLHGLVVVDVVEGTAMASLIH--MQKILSTRMQHFSSIEKAI 140
HS+G + H ++ ++ HG+++V G+ ++ ++ +Q+ L++ ++ ++E I
Sbjct: 147 HSLGXTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQE-LNSSERNILTVEDPI 205
Query: 141 EWSVKG 146
E+ + G
Sbjct: 206 EFDIDG 211
>pdb|3FSG|A Chain A, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|B Chain B, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|C Chain C, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 3 GTEGPVIFCLHGGGYSGLSFALAAGKIKE--KARVVAMDLRGHGKSS--SENDIDLSIET 58
G+ P+IF LHG S L + + + + +DL G G S S + D +ET
Sbjct: 19 GSGTPIIF-LHGLSLDKQSTXLFFEPLSNVGQYQRIYLDLPGXGNSDPISPSTSDNVLET 77
Query: 59 MCNDVLAVLKEMYGEQPPSIVLVGHSMGGSVAVHVA 94
+ + ++E+ G + +L GHS GG +A +A
Sbjct: 78 L----IEAIEEIIGAR--RFILYGHSYGGYLAQAIA 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,919,844
Number of Sequences: 62578
Number of extensions: 303881
Number of successful extensions: 974
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 904
Number of HSP's gapped (non-prelim): 150
length of query: 277
length of database: 14,973,337
effective HSP length: 98
effective length of query: 179
effective length of database: 8,840,693
effective search space: 1582484047
effective search space used: 1582484047
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)