Query 023798
Match_columns 277
No_of_seqs 337 out of 2537
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 06:44:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023798.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023798hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 4.7E-32 1E-36 227.8 20.8 159 4-181 105-270 (346)
2 KOG0105 Alternative splicing f 100.0 4.7E-29 1E-33 182.4 21.2 185 1-188 1-192 (241)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.8E-29 6.2E-34 215.3 20.3 152 5-175 2-160 (352)
4 TIGR01645 half-pint poly-U bin 100.0 3.2E-29 6.9E-34 221.3 20.8 165 5-177 106-277 (612)
5 TIGR01622 SF-CC1 splicing fact 100.0 1.8E-28 3.9E-33 217.3 21.1 167 4-178 87-260 (457)
6 KOG0148 Apoptosis-promoting RN 100.0 5E-29 1.1E-33 192.7 14.5 169 7-180 63-234 (321)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.2E-27 2.5E-32 205.4 22.8 175 5-179 88-344 (352)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.2E-27 2.6E-32 211.9 22.3 160 5-174 1-162 (481)
9 TIGR01628 PABP-1234 polyadenyl 100.0 1.9E-27 4.2E-32 215.4 19.7 151 8-175 2-158 (562)
10 TIGR01648 hnRNP-R-Q heterogene 100.0 1.5E-26 3.1E-31 204.2 23.6 170 6-179 58-302 (578)
11 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.3E-26 2.9E-31 205.3 21.5 170 4-175 273-465 (481)
12 KOG0117 Heterogeneous nuclear 99.9 1.1E-26 2.4E-31 191.2 16.3 171 6-180 83-327 (506)
13 TIGR01642 U2AF_lg U2 snRNP aux 99.9 4.7E-26 1E-30 204.5 21.5 171 3-177 172-368 (509)
14 TIGR01642 U2AF_lg U2 snRNP aux 99.9 5.1E-26 1.1E-30 204.3 21.2 173 5-177 294-495 (509)
15 KOG0109 RNA-binding protein LA 99.9 3.7E-27 8.1E-32 184.1 11.7 147 7-183 3-149 (346)
16 KOG0144 RNA-binding protein CU 99.9 3.3E-26 7.1E-31 187.6 13.1 164 5-188 33-206 (510)
17 TIGR01628 PABP-1234 polyadenyl 99.9 1.3E-25 2.9E-30 203.5 17.8 176 5-181 177-361 (562)
18 KOG0145 RNA-binding protein EL 99.9 1.2E-25 2.5E-30 173.2 13.8 161 4-185 39-206 (360)
19 KOG0131 Splicing factor 3b, su 99.9 1.3E-25 2.9E-30 164.1 13.4 166 3-186 6-179 (203)
20 TIGR01622 SF-CC1 splicing fact 99.9 3.2E-24 6.9E-29 190.2 21.7 175 6-180 186-444 (457)
21 KOG0127 Nucleolar protein fibr 99.9 2.3E-24 4.9E-29 181.7 15.4 177 7-183 6-195 (678)
22 KOG0127 Nucleolar protein fibr 99.9 2.4E-23 5.3E-28 175.5 18.7 179 5-183 116-377 (678)
23 KOG0145 RNA-binding protein EL 99.9 5.8E-23 1.3E-27 158.4 16.1 175 6-180 127-354 (360)
24 KOG0106 Alternative splicing f 99.9 1.4E-23 3E-28 161.3 11.3 163 7-178 2-165 (216)
25 KOG0107 Alternative splicing f 99.9 3.3E-22 7.2E-27 145.5 16.3 80 4-85 8-87 (195)
26 KOG0124 Polypyrimidine tract-b 99.9 1E-23 2.2E-28 169.8 8.0 163 7-177 114-283 (544)
27 KOG0107 Alternative splicing f 99.9 9.2E-22 2E-26 143.2 14.8 78 107-185 9-86 (195)
28 KOG0123 Polyadenylate-binding 99.9 2E-21 4.3E-26 164.5 16.5 141 7-175 2-144 (369)
29 KOG0110 RNA-binding protein (R 99.9 1.9E-21 4.1E-26 169.0 13.1 160 7-176 516-685 (725)
30 KOG4207 Predicted splicing fac 99.9 7.6E-21 1.7E-25 141.9 12.8 81 5-85 12-95 (256)
31 KOG4206 Spliceosomal protein s 99.9 6E-20 1.3E-24 139.8 16.1 171 1-172 4-209 (221)
32 KOG0146 RNA-binding protein ET 99.8 5.7E-20 1.2E-24 142.5 13.3 176 5-180 18-361 (371)
33 KOG0123 Polyadenylate-binding 99.8 1.2E-19 2.7E-24 153.6 15.1 158 4-173 74-235 (369)
34 KOG4676 Splicing factor, argin 99.8 1.1E-20 2.5E-25 153.4 7.2 166 5-172 6-214 (479)
35 TIGR01645 half-pint poly-U bin 99.8 1.7E-18 3.8E-23 153.5 21.3 77 5-81 203-282 (612)
36 KOG1457 RNA binding protein (c 99.8 4.6E-19 1E-23 134.0 14.8 169 5-173 33-275 (284)
37 KOG0144 RNA-binding protein CU 99.8 8.6E-20 1.9E-24 150.2 11.5 180 5-184 123-504 (510)
38 KOG0147 Transcriptional coacti 99.8 1.4E-20 3.1E-25 159.4 6.9 174 4-183 177-357 (549)
39 KOG0148 Apoptosis-promoting RN 99.8 1.7E-19 3.8E-24 140.0 11.1 130 1-176 1-134 (321)
40 KOG4205 RNA-binding protein mu 99.8 1.9E-19 4.1E-24 147.3 11.7 164 2-180 2-172 (311)
41 PLN03134 glycine-rich RNA-bind 99.8 9.8E-19 2.1E-23 129.5 13.2 81 5-85 33-116 (144)
42 KOG0147 Transcriptional coacti 99.8 6.2E-19 1.3E-23 149.5 13.6 175 6-181 278-525 (549)
43 KOG0113 U1 small nuclear ribon 99.8 4.2E-18 9E-23 134.2 15.1 84 2-85 97-183 (335)
44 KOG4207 Predicted splicing fac 99.8 7.4E-18 1.6E-22 126.1 13.2 74 103-176 8-85 (256)
45 KOG1548 Transcription elongati 99.8 4.6E-17 9.9E-22 130.8 17.4 179 5-183 133-351 (382)
46 KOG0121 Nuclear cap-binding pr 99.8 1.1E-18 2.3E-23 120.6 7.0 80 4-83 34-116 (153)
47 KOG0110 RNA-binding protein (R 99.7 6.2E-17 1.3E-21 141.2 14.4 176 4-182 383-596 (725)
48 PLN03120 nucleic acid binding 99.7 7.9E-17 1.7E-21 127.4 11.1 79 6-85 4-82 (260)
49 KOG1190 Polypyrimidine tract-b 99.7 4.2E-16 9.1E-21 127.8 15.6 167 6-174 297-480 (492)
50 PF00076 RRM_1: RNA recognitio 99.7 3.4E-17 7.4E-22 106.7 6.8 68 9-76 1-70 (70)
51 TIGR01648 hnRNP-R-Q heterogene 99.7 1.1E-16 2.4E-21 141.9 12.0 127 5-136 232-369 (578)
52 KOG4212 RNA-binding protein hn 99.7 1E-15 2.2E-20 126.6 16.1 169 5-173 43-283 (608)
53 KOG4211 Splicing factor hnRNP- 99.7 1.3E-15 2.8E-20 128.0 15.7 158 5-173 9-171 (510)
54 KOG0120 Splicing factor U2AF, 99.7 4.9E-16 1.1E-20 133.6 11.8 172 5-176 288-484 (500)
55 PLN03121 nucleic acid binding 99.7 2.1E-15 4.6E-20 117.4 13.9 79 5-84 4-82 (243)
56 KOG0114 Predicted RNA-binding 99.7 6.4E-16 1.4E-20 102.9 8.8 79 5-83 17-95 (124)
57 KOG0122 Translation initiation 99.7 6.1E-16 1.3E-20 118.8 9.3 79 4-82 187-268 (270)
58 COG0724 RNA-binding proteins ( 99.7 3.8E-15 8.1E-20 123.7 14.6 140 6-145 115-262 (306)
59 TIGR01659 sex-lethal sex-letha 99.6 4.2E-15 9.2E-20 125.5 12.1 82 5-86 192-278 (346)
60 PF14259 RRM_6: RNA recognitio 99.6 1.4E-15 3E-20 99.1 7.1 68 9-76 1-70 (70)
61 KOG0126 Predicted RNA-binding 99.6 7.4E-17 1.6E-21 118.4 0.8 84 4-87 33-119 (219)
62 KOG0113 U1 small nuclear ribon 99.6 3.2E-14 6.9E-19 112.5 14.7 72 105-176 98-173 (335)
63 KOG0130 RNA-binding protein RB 99.6 3.5E-15 7.7E-20 104.2 6.4 78 7-84 73-153 (170)
64 KOG0124 Polypyrimidine tract-b 99.6 1.3E-13 2.8E-18 111.9 15.9 76 6-81 210-288 (544)
65 KOG0125 Ataxin 2-binding prote 99.6 9.7E-15 2.1E-19 116.8 9.2 81 4-84 94-175 (376)
66 PLN03213 repressor of silencin 99.6 9.7E-15 2.1E-19 122.7 9.6 77 4-81 8-86 (759)
67 PLN03134 glycine-rich RNA-bind 99.6 1.5E-13 3.2E-18 101.8 14.6 72 105-176 31-106 (144)
68 KOG0149 Predicted RNA-binding 99.6 2.2E-14 4.8E-19 109.9 10.1 76 7-83 13-91 (247)
69 smart00362 RRM_2 RNA recogniti 99.6 2.4E-14 5.2E-19 93.3 9.0 70 8-77 1-71 (72)
70 KOG1190 Polypyrimidine tract-b 99.6 3.2E-14 6.8E-19 117.0 11.1 178 3-183 25-225 (492)
71 KOG4212 RNA-binding protein hn 99.5 4.4E-13 9.6E-18 111.2 15.9 76 4-79 213-290 (608)
72 KOG1456 Heterogeneous nuclear 99.5 7.1E-13 1.5E-17 107.9 15.3 171 4-176 285-477 (494)
73 KOG0415 Predicted peptidyl pro 99.5 2.8E-14 6E-19 115.3 6.5 80 4-83 237-319 (479)
74 KOG1456 Heterogeneous nuclear 99.5 4.6E-12 1E-16 103.3 18.4 173 3-178 117-357 (494)
75 KOG0111 Cyclophilin-type pepti 99.5 3E-14 6.6E-19 107.8 5.4 84 4-87 8-94 (298)
76 cd00590 RRM RRM (RNA recogniti 99.5 2.8E-13 6E-18 88.7 9.2 72 8-79 1-74 (74)
77 PF13893 RRM_5: RNA recognitio 99.5 2.1E-13 4.6E-18 84.5 7.8 56 23-80 1-56 (56)
78 PF00076 RRM_1: RNA recognitio 99.5 3E-13 6.6E-18 87.9 8.6 66 111-176 1-69 (70)
79 smart00360 RRM RNA recognition 99.5 2.5E-13 5.4E-18 88.1 8.0 67 11-77 1-70 (71)
80 KOG0108 mRNA cleavage and poly 99.4 3.8E-13 8.1E-18 115.3 9.2 79 7-85 19-100 (435)
81 KOG0117 Heterogeneous nuclear 99.4 6.8E-13 1.5E-17 110.4 7.4 77 6-87 259-335 (506)
82 KOG0109 RNA-binding protein LA 99.4 5.1E-13 1.1E-17 105.4 5.8 75 4-83 76-150 (346)
83 KOG0129 Predicted RNA-binding 99.4 2.2E-11 4.8E-16 103.5 15.1 166 5-173 258-444 (520)
84 KOG0132 RNA polymerase II C-te 99.4 1.3E-12 2.9E-17 115.4 7.8 79 5-86 420-498 (894)
85 KOG0105 Alternative splicing f 99.4 4.2E-12 9.2E-17 93.8 9.2 78 107-188 5-83 (241)
86 PLN03120 nucleic acid binding 99.4 6.1E-12 1.3E-16 99.9 9.9 70 108-178 4-74 (260)
87 smart00361 RRM_1 RNA recogniti 99.3 5.3E-12 1.1E-16 81.8 7.3 58 20-77 2-69 (70)
88 PF14259 RRM_6: RNA recognitio 99.3 8.7E-12 1.9E-16 81.0 7.7 65 111-175 1-68 (70)
89 KOG0130 RNA-binding protein RB 99.3 1.7E-11 3.7E-16 86.0 7.5 74 105-178 69-146 (170)
90 KOG0120 Splicing factor U2AF, 99.3 3.3E-11 7.2E-16 104.1 10.0 170 5-178 174-363 (500)
91 KOG0112 Large RNA-binding prot 99.2 6E-12 1.3E-16 113.0 4.9 151 4-177 370-522 (975)
92 KOG0146 RNA-binding protein ET 99.2 1E-11 2.2E-16 97.0 5.5 82 3-84 282-366 (371)
93 KOG0121 Nuclear cap-binding pr 99.2 2.8E-11 6E-16 84.1 6.8 76 106-185 34-113 (153)
94 KOG1365 RNA-binding protein Fu 99.2 3.5E-11 7.6E-16 98.5 8.5 168 7-175 162-353 (508)
95 KOG4454 RNA binding protein (R 99.2 2.3E-12 4.9E-17 97.8 1.4 139 5-172 8-151 (267)
96 KOG0122 Translation initiation 99.2 1.2E-10 2.6E-15 90.0 10.6 79 105-187 186-268 (270)
97 KOG0114 Predicted RNA-binding 99.2 7.8E-11 1.7E-15 78.8 8.3 73 104-176 14-87 (124)
98 PLN03121 nucleic acid binding 99.2 9E-11 2E-15 91.8 9.7 68 107-175 4-72 (243)
99 smart00362 RRM_2 RNA recogniti 99.2 1.3E-10 2.7E-15 75.4 9.1 66 110-175 1-68 (72)
100 PLN03213 repressor of silencin 99.2 6.7E-11 1.4E-15 100.0 9.5 71 107-177 9-81 (759)
101 KOG0125 Ataxin 2-binding prote 99.2 1.2E-10 2.5E-15 93.7 10.2 73 104-176 92-166 (376)
102 KOG0149 Predicted RNA-binding 99.1 1.9E-10 4E-15 88.6 7.4 75 105-180 9-87 (247)
103 smart00360 RRM RNA recognition 99.1 5.6E-10 1.2E-14 72.0 8.7 63 113-175 1-67 (71)
104 KOG0131 Splicing factor 3b, su 99.1 1.6E-10 3.5E-15 85.4 6.3 81 5-85 95-179 (203)
105 KOG0153 Predicted RNA-binding 99.1 3E-10 6.6E-15 92.0 8.5 77 3-82 225-302 (377)
106 cd00590 RRM RRM (RNA recogniti 99.1 9.1E-10 2E-14 71.7 9.1 67 110-176 1-70 (74)
107 KOG4208 Nucleolar RNA-binding 99.1 3.6E-10 7.8E-15 85.4 7.9 79 5-83 48-130 (214)
108 KOG0415 Predicted peptidyl pro 99.1 5.6E-10 1.2E-14 90.7 9.3 75 104-178 235-313 (479)
109 KOG4661 Hsp27-ERE-TATA-binding 99.1 9E-10 1.9E-14 94.8 9.3 81 6-86 405-488 (940)
110 PF13893 RRM_5: RNA recognitio 99.0 2.2E-09 4.8E-14 66.2 7.9 53 125-178 1-53 (56)
111 KOG0533 RRM motif-containing p 99.0 2.2E-09 4.8E-14 85.0 8.5 80 5-84 82-163 (243)
112 KOG2193 IGF-II mRNA-binding pr 99.0 1.3E-10 2.9E-15 96.4 1.2 143 7-175 2-148 (584)
113 KOG0151 Predicted splicing reg 98.9 1.6E-09 3.4E-14 95.5 6.4 79 5-83 173-257 (877)
114 KOG0128 RNA-binding protein SA 98.9 9.5E-11 2.1E-15 105.0 -1.4 133 5-173 666-804 (881)
115 KOG4660 Protein Mei2, essentia 98.9 7.8E-10 1.7E-14 95.1 3.9 156 4-164 73-231 (549)
116 KOG4205 RNA-binding protein mu 98.9 2.5E-09 5.5E-14 88.1 6.3 83 5-88 96-181 (311)
117 KOG0126 Predicted RNA-binding 98.9 1.9E-10 4E-15 85.0 -0.3 73 107-179 34-110 (219)
118 KOG0111 Cyclophilin-type pepti 98.9 1.5E-09 3.3E-14 82.7 4.4 72 107-178 9-84 (298)
119 PF04059 RRM_2: RNA recognitio 98.9 1.5E-08 3.2E-13 68.9 8.6 75 7-81 2-85 (97)
120 KOG4211 Splicing factor hnRNP- 98.9 7.6E-08 1.6E-12 81.9 14.2 169 5-176 102-350 (510)
121 KOG0116 RasGAP SH3 binding pro 98.9 5.4E-09 1.2E-13 89.5 7.1 75 7-82 289-366 (419)
122 COG0724 RNA-binding proteins ( 98.8 2.1E-08 4.5E-13 83.0 9.4 71 108-178 115-189 (306)
123 KOG0106 Alternative splicing f 98.8 3.8E-08 8.2E-13 76.4 9.6 63 109-175 2-64 (216)
124 KOG4209 Splicing factor RNPS1, 98.8 6.8E-09 1.5E-13 82.5 5.7 79 4-83 99-180 (231)
125 smart00361 RRM_1 RNA recogniti 98.8 3.8E-08 8.3E-13 63.6 7.6 55 122-176 2-67 (70)
126 KOG4210 Nuclear localization s 98.8 1.5E-08 3.1E-13 83.4 7.0 158 5-173 87-253 (285)
127 KOG0108 mRNA cleavage and poly 98.8 1.6E-08 3.4E-13 87.2 7.3 68 109-176 19-90 (435)
128 KOG4676 Splicing factor, argin 98.7 4.2E-09 9E-14 86.8 1.8 63 7-71 152-214 (479)
129 PF11608 Limkain-b1: Limkain b 98.7 2.1E-07 4.5E-12 60.3 7.6 70 7-83 3-77 (90)
130 KOG1365 RNA-binding protein Fu 98.6 8.5E-07 1.8E-11 73.3 12.2 158 4-165 58-225 (508)
131 KOG1457 RNA binding protein (c 98.6 5.9E-08 1.3E-12 74.3 3.9 66 4-70 208-273 (284)
132 KOG4307 RNA binding protein RB 98.6 3.4E-07 7.4E-12 81.0 9.1 169 5-174 310-504 (944)
133 KOG4661 Hsp27-ERE-TATA-binding 98.5 1E-06 2.2E-11 76.4 9.3 70 106-175 403-476 (940)
134 KOG0153 Predicted RNA-binding 98.5 7.9E-07 1.7E-11 72.6 8.2 71 102-174 222-293 (377)
135 KOG0226 RNA-binding proteins [ 98.5 1.9E-07 4.1E-12 73.0 4.5 76 5-80 189-267 (290)
136 KOG0226 RNA-binding proteins [ 98.4 5E-07 1.1E-11 70.7 6.3 155 9-176 99-262 (290)
137 KOG4206 Spliceosomal protein s 98.4 9.9E-07 2.1E-11 68.1 7.8 68 108-175 9-81 (221)
138 KOG0132 RNA polymerase II C-te 98.4 6.1E-07 1.3E-11 80.4 7.4 72 107-180 420-491 (894)
139 KOG0533 RRM motif-containing p 98.4 9.9E-07 2.2E-11 70.2 7.6 73 107-179 82-157 (243)
140 KOG0116 RasGAP SH3 binding pro 98.4 4.2E-06 9.1E-11 72.0 11.5 76 107-187 287-366 (419)
141 PF08777 RRM_3: RNA binding mo 98.3 1.2E-06 2.7E-11 61.0 5.8 70 7-79 2-76 (105)
142 KOG4208 Nucleolar RNA-binding 98.3 2.9E-06 6.3E-11 64.5 7.5 76 105-180 46-126 (214)
143 KOG4454 RNA binding protein (R 98.2 7.6E-07 1.6E-11 68.2 3.1 71 105-175 6-78 (267)
144 KOG2416 Acinus (induces apopto 98.2 1.1E-06 2.5E-11 76.4 4.0 75 4-81 442-520 (718)
145 KOG1995 Conserved Zn-finger pr 98.2 1.7E-06 3.6E-11 71.2 4.2 80 5-84 65-155 (351)
146 KOG4660 Protein Mei2, essentia 98.2 1.6E-06 3.5E-11 75.1 4.4 71 105-176 72-142 (549)
147 KOG1548 Transcription elongati 98.2 1.5E-05 3.1E-10 65.4 9.2 80 4-84 263-353 (382)
148 KOG2202 U2 snRNP splicing fact 98.2 8.5E-07 1.8E-11 69.7 2.0 61 21-81 83-146 (260)
149 KOG3152 TBP-binding protein, a 98.1 1.7E-06 3.7E-11 67.8 2.5 70 5-74 73-157 (278)
150 PF08777 RRM_3: RNA binding mo 98.1 7.6E-06 1.7E-10 57.0 5.2 59 109-169 2-60 (105)
151 KOG0151 Predicted splicing reg 98.1 1.8E-05 3.8E-10 70.6 8.4 73 101-173 167-246 (877)
152 PF14605 Nup35_RRM_2: Nup53/35 98.0 1.6E-05 3.4E-10 48.0 5.2 53 6-62 1-53 (53)
153 KOG4210 Nuclear localization s 98.0 7.1E-06 1.5E-10 67.7 3.7 81 3-84 181-265 (285)
154 COG5175 MOT2 Transcriptional r 97.9 2.9E-05 6.2E-10 63.4 6.9 75 7-81 115-201 (480)
155 PF04059 RRM_2: RNA recognitio 97.9 0.0001 2.2E-09 50.3 8.5 66 109-174 2-73 (97)
156 KOG4849 mRNA cleavage factor I 97.9 1E-05 2.2E-10 66.3 3.9 75 6-80 80-159 (498)
157 KOG1855 Predicted RNA-binding 97.9 1.7E-05 3.6E-10 66.8 4.9 65 5-69 230-310 (484)
158 PF11608 Limkain-b1: Limkain b 97.9 0.00014 2.9E-09 47.4 7.6 66 109-184 3-73 (90)
159 KOG4307 RNA binding protein RB 97.8 0.00011 2.5E-09 65.5 8.9 76 4-79 864-943 (944)
160 KOG0129 Predicted RNA-binding 97.8 9.1E-05 2E-09 64.0 7.9 61 4-64 368-432 (520)
161 PF05172 Nup35_RRM: Nup53/35/4 97.8 0.00013 2.8E-09 50.1 7.1 74 5-80 5-89 (100)
162 PF08952 DUF1866: Domain of un 97.8 0.00015 3.3E-09 52.7 7.9 74 4-83 25-107 (146)
163 KOG2314 Translation initiation 97.8 9.9E-05 2.2E-09 64.4 7.7 76 6-81 58-142 (698)
164 KOG4209 Splicing factor RNPS1, 97.8 0.00016 3.6E-09 57.7 8.5 71 106-177 99-173 (231)
165 KOG0128 RNA-binding protein SA 97.7 4.5E-06 9.8E-11 75.8 -2.2 156 7-172 572-735 (881)
166 KOG0115 RNA-binding protein p5 97.5 0.00028 6E-09 55.8 6.2 100 57-182 6-108 (275)
167 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00025 5.5E-09 42.7 4.6 52 109-163 2-53 (53)
168 KOG1996 mRNA splicing factor [ 97.5 0.00032 7E-09 56.4 6.2 62 20-81 300-365 (378)
169 PF08675 RNA_bind: RNA binding 97.4 0.00097 2.1E-08 43.5 6.6 55 6-66 9-63 (87)
170 KOG3152 TBP-binding protein, a 97.4 0.00011 2.5E-09 57.8 2.4 69 107-175 73-157 (278)
171 KOG0112 Large RNA-binding prot 97.4 0.00032 6.9E-09 64.5 5.5 80 4-86 453-534 (975)
172 KOG2202 U2 snRNP splicing fact 97.3 0.00061 1.3E-08 53.9 5.9 58 123-180 83-144 (260)
173 COG5175 MOT2 Transcriptional r 97.3 0.00073 1.6E-08 55.5 6.3 75 104-178 110-197 (480)
174 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0023 5E-08 43.9 6.2 66 108-175 6-82 (100)
175 KOG2314 Translation initiation 97.1 0.0018 3.9E-08 56.8 7.0 66 108-173 58-132 (698)
176 PF15023 DUF4523: Protein of u 97.1 0.0052 1.1E-07 44.3 8.1 73 4-81 84-160 (166)
177 PF07576 BRAP2: BRCA1-associat 97.0 0.006 1.3E-07 42.7 8.0 68 4-71 11-80 (110)
178 PF03467 Smg4_UPF3: Smg-4/UPF3 96.9 0.0015 3.4E-08 50.0 4.9 82 4-85 5-100 (176)
179 KOG1996 mRNA splicing factor [ 96.9 0.0035 7.6E-08 50.6 6.7 57 122-178 300-361 (378)
180 KOG1855 Predicted RNA-binding 96.9 0.00096 2.1E-08 56.5 3.4 66 104-169 227-309 (484)
181 PF03880 DbpA: DbpA RNA bindin 96.8 0.0096 2.1E-07 38.6 7.3 66 8-80 2-74 (74)
182 KOG2253 U1 snRNP complex, subu 96.8 0.0009 1.9E-08 59.8 2.7 121 5-132 39-159 (668)
183 KOG1995 Conserved Zn-finger pr 96.7 0.0038 8.3E-08 51.9 5.9 71 105-175 63-145 (351)
184 KOG2591 c-Mpl binding protein, 96.5 0.0083 1.8E-07 52.7 6.7 98 55-180 147-248 (684)
185 PF10309 DUF2414: Protein of u 96.5 0.025 5.3E-07 35.0 6.9 54 6-65 5-62 (62)
186 KOG0804 Cytoplasmic Zn-finger 96.4 0.021 4.6E-07 49.0 8.5 67 5-71 73-141 (493)
187 PF10309 DUF2414: Protein of u 96.4 0.035 7.5E-07 34.4 7.0 54 109-166 6-62 (62)
188 PF04847 Calcipressin: Calcipr 96.3 0.022 4.7E-07 43.9 7.0 63 19-84 8-72 (184)
189 PF08675 RNA_bind: RNA binding 96.1 0.023 5E-07 37.2 5.4 55 109-168 10-64 (87)
190 PF08952 DUF1866: Domain of un 95.9 0.047 1E-06 40.0 6.9 53 123-180 51-103 (146)
191 KOG2591 c-Mpl binding protein, 95.9 0.011 2.3E-07 52.1 4.2 71 5-79 174-248 (684)
192 KOG0835 Cyclin L [General func 95.9 0.015 3.3E-07 47.9 4.7 22 45-67 173-194 (367)
193 KOG2135 Proteins containing th 95.8 0.006 1.3E-07 52.5 2.5 74 5-82 371-445 (526)
194 KOG0115 RNA-binding protein p5 95.7 0.013 2.9E-07 46.5 3.8 75 7-81 32-112 (275)
195 KOG4285 Mitotic phosphoprotein 95.5 0.053 1.1E-06 44.2 6.6 69 8-81 199-268 (350)
196 KOG0835 Cyclin L [General func 95.4 0.029 6.3E-07 46.3 4.7 11 119-129 212-222 (367)
197 KOG2068 MOT2 transcription fac 95.3 0.0079 1.7E-07 49.7 1.3 75 7-81 78-161 (327)
198 KOG4849 mRNA cleavage factor I 94.9 0.027 5.7E-07 46.8 3.3 68 107-174 79-152 (498)
199 KOG2888 Putative RNA binding p 94.9 0.011 2.4E-07 48.6 1.1 10 123-132 227-236 (453)
200 KOG2416 Acinus (induces apopto 94.4 0.028 6.1E-07 50.0 2.3 67 104-172 440-507 (718)
201 PF03467 Smg4_UPF3: Smg-4/UPF3 94.2 0.1 2.2E-06 40.1 5.0 69 107-175 6-84 (176)
202 KOG4574 RNA-binding protein (c 94.2 0.034 7.3E-07 51.5 2.6 72 10-84 302-375 (1007)
203 PF10567 Nab6_mRNP_bdg: RNA-re 94.1 1.8 3.9E-05 35.6 11.8 163 6-169 15-214 (309)
204 PF07576 BRAP2: BRCA1-associat 93.7 0.8 1.7E-05 32.1 8.2 65 109-173 14-81 (110)
205 KOG2318 Uncharacterized conser 93.5 0.45 9.8E-06 42.5 8.1 80 3-82 171-307 (650)
206 KOG2193 IGF-II mRNA-binding pr 93.3 0.0032 6.9E-08 53.4 -5.1 77 6-82 80-156 (584)
207 PF11767 SET_assoc: Histone ly 93.2 0.39 8.3E-06 30.2 5.3 55 17-77 11-65 (66)
208 PF15023 DUF4523: Protein of u 92.4 0.65 1.4E-05 33.8 6.2 63 105-170 83-149 (166)
209 PF14111 DUF4283: Domain of un 92.3 0.17 3.8E-06 37.7 3.5 120 9-144 18-141 (153)
210 KOG4285 Mitotic phosphoprotein 91.8 0.72 1.6E-05 37.9 6.6 63 108-174 197-259 (350)
211 KOG3263 Nucleic acid binding p 91.7 0.041 8.9E-07 40.8 -0.5 12 254-265 83-94 (196)
212 KOG2068 MOT2 transcription fac 91.5 0.11 2.3E-06 43.3 1.6 69 107-175 76-154 (327)
213 PF07292 NID: Nmi/IFP 35 domai 91.3 0.17 3.7E-06 33.8 2.2 73 48-130 1-74 (88)
214 KOG2135 Proteins containing th 91.2 0.19 4.1E-06 43.7 2.9 70 107-179 371-441 (526)
215 KOG0804 Cytoplasmic Zn-finger 91.1 1 2.2E-05 39.2 7.0 66 108-173 74-142 (493)
216 PF04847 Calcipressin: Calcipr 88.3 2.5 5.4E-05 32.7 6.8 57 121-179 8-66 (184)
217 KOG4019 Calcineurin-mediated s 87.6 4.5 9.8E-05 30.8 7.5 80 5-87 9-94 (193)
218 PF03880 DbpA: DbpA RNA bindin 86.8 5.5 0.00012 25.6 6.9 56 118-178 11-71 (74)
219 KOG2253 U1 snRNP complex, subu 85.6 0.73 1.6E-05 41.9 2.9 67 104-175 36-102 (668)
220 KOG4483 Uncharacterized conser 85.5 1.8 3.9E-05 37.1 4.9 56 6-64 391-446 (528)
221 KOG4410 5-formyltetrahydrofola 84.4 3.2 6.9E-05 33.9 5.7 48 6-55 330-377 (396)
222 KOG4574 RNA-binding protein (c 82.9 0.72 1.6E-05 43.2 1.7 58 113-172 303-360 (1007)
223 PF03468 XS: XS domain; Inter 81.7 1.3 2.9E-05 31.4 2.4 56 8-63 10-75 (116)
224 PF11767 SET_assoc: Histone ly 79.9 9.6 0.00021 24.0 5.5 50 119-173 11-60 (66)
225 KOG2295 C2H2 Zn-finger protein 79.2 0.25 5.4E-06 43.8 -2.3 69 5-73 230-301 (648)
226 KOG1295 Nonsense-mediated deca 78.8 2.2 4.7E-05 36.5 3.1 67 5-71 6-78 (376)
227 PRK14548 50S ribosomal protein 74.6 20 0.00044 23.8 6.2 55 112-166 24-81 (84)
228 TIGR03636 L23_arch archaeal ri 73.7 22 0.00048 23.1 6.2 56 111-166 16-74 (77)
229 KOG3580 Tight junction protein 72.6 21 0.00046 32.7 7.6 41 103-143 56-97 (1027)
230 PF15513 DUF4651: Domain of un 72.2 9.8 0.00021 23.5 3.9 19 21-39 9-27 (62)
231 COG5638 Uncharacterized conser 71.3 18 0.0004 31.3 6.7 80 2-81 142-296 (622)
232 KOG4246 Predicted DNA-binding 68.4 2.1 4.6E-05 40.2 0.7 26 108-133 145-176 (1194)
233 KOG2891 Surface glycoprotein [ 66.9 7.6 0.00016 31.7 3.4 65 6-70 149-247 (445)
234 KOG4365 Uncharacterized conser 64.8 1.1 2.4E-05 38.8 -1.6 75 6-81 3-80 (572)
235 KOG2318 Uncharacterized conser 64.5 58 0.0013 29.8 8.6 70 106-175 172-297 (650)
236 PF09707 Cas_Cas2CT1978: CRISP 63.6 18 0.00038 24.2 4.2 50 5-54 24-73 (86)
237 PF14893 PNMA: PNMA 63.5 9.5 0.0002 32.5 3.6 54 1-54 13-71 (331)
238 PRK14548 50S ribosomal protein 62.8 37 0.00081 22.5 5.6 57 9-65 23-81 (84)
239 KOG4008 rRNA processing protei 62.0 6.2 0.00013 31.4 2.1 35 4-38 38-72 (261)
240 PF02714 DUF221: Domain of unk 61.9 18 0.00039 30.6 5.2 56 48-130 1-56 (325)
241 KOG3869 Uncharacterized conser 61.8 3.1 6.7E-05 35.9 0.4 14 259-272 312-325 (450)
242 PF15513 DUF4651: Domain of un 61.7 23 0.00049 21.9 4.0 20 122-141 8-27 (62)
243 KOG4483 Uncharacterized conser 61.3 49 0.0011 28.8 7.3 55 108-165 391-446 (528)
244 PF07292 NID: Nmi/IFP 35 domai 59.6 5.1 0.00011 26.8 1.1 25 4-28 50-74 (88)
245 KOG2812 Uncharacterized conser 58.3 13 0.00028 31.5 3.4 8 254-261 87-94 (426)
246 KOG4410 5-formyltetrahydrofola 58.1 61 0.0013 26.8 7.0 52 105-157 327-378 (396)
247 TIGR03636 L23_arch archaeal ri 56.0 54 0.0012 21.3 5.7 58 8-65 15-74 (77)
248 PTZ00191 60S ribosomal protein 53.1 73 0.0016 23.6 6.2 56 110-165 83-141 (145)
249 PF10567 Nab6_mRNP_bdg: RNA-re 52.2 51 0.0011 27.4 5.8 60 103-162 10-80 (309)
250 PF11411 DNA_ligase_IV: DNA li 51.8 12 0.00027 20.2 1.5 17 16-32 19-35 (36)
251 KOG1295 Nonsense-mediated deca 51.4 20 0.00044 30.8 3.6 66 108-173 7-79 (376)
252 KOG2146 Splicing coactivator S 51.3 59 0.0013 26.9 5.9 31 49-79 56-87 (354)
253 PF03439 Spt5-NGN: Early trans 50.6 28 0.00062 22.9 3.6 35 33-69 34-68 (84)
254 PRK11558 putative ssRNA endonu 49.5 35 0.00075 23.3 3.8 50 6-55 27-76 (97)
255 PF08544 GHMP_kinases_C: GHMP 49.1 69 0.0015 20.5 6.1 44 123-167 37-80 (85)
256 KOG0156 Cytochrome P450 CYP2 s 48.4 42 0.00092 30.5 5.4 59 10-75 36-97 (489)
257 KOG4213 RNA-binding protein La 47.9 27 0.00058 26.7 3.4 46 18-63 118-168 (205)
258 PF09902 DUF2129: Uncharacteri 45.6 58 0.0013 20.8 4.2 43 21-70 12-54 (71)
259 PF15063 TC1: Thyroid cancer p 45.1 15 0.00032 23.6 1.4 25 9-33 28-52 (79)
260 KOG4246 Predicted DNA-binding 44.0 12 0.00025 35.7 1.1 10 116-125 195-204 (1194)
261 KOG2187 tRNA uracil-5-methyltr 41.3 22 0.00047 32.1 2.3 41 45-85 63-103 (534)
262 COG3254 Uncharacterized conser 41.3 1.2E+02 0.0026 21.0 5.6 43 21-63 27-69 (105)
263 COG0150 PurM Phosphoribosylami 40.7 12 0.00025 31.8 0.6 65 10-75 252-329 (345)
264 PRK08559 nusG transcription an 38.9 1.4E+02 0.0031 22.2 6.2 33 33-67 36-68 (153)
265 PF01071 GARS_A: Phosphoribosy 38.5 1.4E+02 0.0031 23.4 6.2 47 18-65 24-70 (194)
266 COG0018 ArgS Arginyl-tRNA synt 38.2 3.4E+02 0.0074 25.4 9.8 96 21-143 61-165 (577)
267 CHL00123 rps6 ribosomal protei 37.3 1.3E+02 0.0028 20.5 5.2 50 14-63 14-80 (97)
268 TIGR01873 cas_CT1978 CRISPR-as 37.0 72 0.0016 21.3 3.8 49 6-54 25-74 (87)
269 PF12091 DUF3567: Protein of u 36.8 36 0.00079 22.5 2.3 17 118-134 60-76 (85)
270 PF11823 DUF3343: Protein of u 36.7 47 0.001 21.1 2.9 28 46-73 2-29 (73)
271 COG0030 KsgA Dimethyladenosine 35.5 57 0.0012 26.9 3.8 27 7-33 96-122 (259)
272 PRK11634 ATP-dependent RNA hel 35.2 1.3E+02 0.0028 28.4 6.5 66 9-81 489-561 (629)
273 PF02829 3H: 3H domain; Inter 34.5 1.1E+02 0.0025 20.9 4.5 51 17-67 8-58 (98)
274 PTZ00191 60S ribosomal protein 34.3 1.6E+02 0.0035 21.8 5.6 55 9-63 84-140 (145)
275 KOG4019 Calcineurin-mediated s 33.8 34 0.00074 26.2 2.1 64 109-174 11-79 (193)
276 cd04889 ACT_PDH-BS-like C-term 32.2 1.1E+02 0.0023 17.8 5.5 42 21-62 13-55 (56)
277 PRK09631 DNA topoisomerase IV 31.8 3.8E+02 0.0083 25.4 8.8 59 6-65 220-282 (635)
278 PF15407 Spo7_2_N: Sporulation 31.5 15 0.00033 23.1 -0.0 24 5-28 26-49 (67)
279 PF14026 DUF4242: Protein of u 31.4 1.5E+02 0.0032 19.2 7.8 60 111-171 3-71 (77)
280 COG5227 SMT3 Ubiquitin-like pr 31.1 1.6E+02 0.0036 19.7 4.6 65 2-67 30-100 (103)
281 PF00403 HMA: Heavy-metal-asso 30.5 1.2E+02 0.0027 18.0 6.2 54 8-64 1-58 (62)
282 PF05189 RTC_insert: RNA 3'-te 29.3 1.1E+02 0.0023 21.0 3.9 46 8-53 12-65 (103)
283 PF08734 GYD: GYD domain; Int 29.1 1.8E+02 0.0039 19.4 6.0 45 122-166 22-67 (91)
284 PF12829 Mhr1: Transcriptional 29.0 1.1E+02 0.0024 20.7 3.6 52 116-167 20-72 (91)
285 PF08156 NOP5NT: NOP5NT (NUC12 28.6 18 0.00039 22.8 -0.1 39 21-66 27-65 (67)
286 KOG2854 Possible pfkB family c 28.0 2.3E+02 0.005 24.3 6.1 50 3-53 78-127 (343)
287 KOG2295 C2H2 Zn-finger protein 27.8 15 0.00033 33.1 -0.7 68 106-173 229-300 (648)
288 smart00596 PRE_C2HC PRE_C2HC d 27.7 1.7E+02 0.0036 18.6 4.6 58 21-81 2-63 (69)
289 PF07530 PRE_C2HC: Associated 27.3 1.7E+02 0.0036 18.5 5.0 59 21-82 2-64 (68)
290 PF00398 RrnaAD: Ribosomal RNA 26.6 53 0.0012 26.9 2.3 27 6-32 97-125 (262)
291 PRK11230 glycolate oxidase sub 26.5 2.2E+02 0.0048 26.0 6.4 59 8-66 191-255 (499)
292 KOG4008 rRNA processing protei 26.4 40 0.00086 27.1 1.4 32 109-140 41-72 (261)
293 PRK15464 cold shock-like prote 25.5 52 0.0011 20.9 1.6 11 44-54 15-25 (70)
294 COG5507 Uncharacterized conser 25.5 62 0.0013 22.0 2.0 21 45-65 66-86 (117)
295 TIGR00405 L26e_arch ribosomal 25.2 2.8E+02 0.006 20.3 6.0 27 41-67 34-60 (145)
296 cd00027 BRCT Breast Cancer Sup 24.5 1.2E+02 0.0026 17.9 3.2 27 7-33 2-28 (72)
297 TIGR02542 B_forsyth_147 Bacter 24.4 2.6E+02 0.0057 19.8 5.1 24 13-38 10-33 (145)
298 PF06014 DUF910: Bacterial pro 24.1 53 0.0012 20.3 1.4 17 20-36 4-20 (62)
299 COG0445 GidA Flavin-dependent 23.9 3.3E+02 0.0072 25.4 6.7 94 45-143 236-336 (621)
300 cd06404 PB1_aPKC PB1 domain is 23.7 2.3E+02 0.0049 18.8 6.7 53 8-65 10-68 (83)
301 PRK02886 hypothetical protein; 23.7 2.2E+02 0.0047 19.1 4.2 38 27-70 21-58 (87)
302 KOG1999 RNA polymerase II tran 23.6 2.2E+02 0.0049 28.1 5.9 36 41-77 206-241 (1024)
303 COG5193 LHP1 La protein, small 23.5 43 0.00093 29.1 1.2 57 7-63 175-244 (438)
304 KOG1888 Putative phosphoinosit 23.2 2.3E+02 0.0051 27.4 5.8 72 1-76 306-379 (868)
305 PRK10943 cold shock-like prote 23.2 65 0.0014 20.3 1.7 11 44-54 14-24 (69)
306 PRK10629 EnvZ/OmpR regulon mod 23.1 3E+02 0.0064 19.9 8.1 71 5-80 34-108 (127)
307 PRK11634 ATP-dependent RNA hel 23.1 6.5E+02 0.014 23.9 11.3 58 116-178 495-557 (629)
308 PRK09937 stationary phase/star 23.0 69 0.0015 20.6 1.9 11 44-54 12-22 (74)
309 TIGR02381 cspD cold shock doma 23.0 68 0.0015 20.1 1.8 38 44-82 12-55 (68)
310 PRK15463 cold shock-like prote 23.0 64 0.0014 20.5 1.7 11 44-54 15-25 (70)
311 PF13689 DUF4154: Domain of un 22.8 3.1E+02 0.0067 20.0 8.3 37 44-81 25-61 (145)
312 cd00187 TOP4c DNA Topoisomeras 22.7 4.9E+02 0.011 23.5 7.6 22 7-28 226-247 (445)
313 PHA01632 hypothetical protein 22.7 1.2E+02 0.0026 18.2 2.6 22 110-131 18-39 (64)
314 PRK09507 cspE cold shock prote 22.5 69 0.0015 20.2 1.7 11 44-54 14-24 (69)
315 PF08206 OB_RNB: Ribonuclease 22.5 44 0.00096 20.2 0.8 36 44-80 7-43 (58)
316 PRK14998 cold shock-like prote 22.4 73 0.0016 20.4 1.9 11 44-54 12-22 (73)
317 PF14111 DUF4283: Domain of un 22.0 1E+02 0.0022 22.6 2.9 32 9-40 107-139 (153)
318 PRK05192 tRNA uridine 5-carbox 21.7 1.2E+02 0.0026 28.5 3.8 38 3-40 298-335 (618)
319 TIGR00755 ksgA dimethyladenosi 21.5 1.1E+02 0.0023 24.9 3.2 24 8-31 96-119 (253)
320 PF00313 CSD: 'Cold-shock' DNA 21.4 83 0.0018 19.3 2.0 13 44-56 11-23 (66)
321 PRK08559 nusG transcription an 20.9 3.6E+02 0.0078 20.0 6.0 34 135-169 36-69 (153)
322 PF08442 ATP-grasp_2: ATP-gras 20.8 2.8E+02 0.0061 21.8 5.2 54 18-71 25-81 (202)
323 PRK09890 cold shock protein Cs 20.3 78 0.0017 20.0 1.7 11 44-54 15-25 (70)
324 KOG2891 Surface glycoprotein [ 20.1 1E+02 0.0023 25.3 2.7 65 108-172 149-248 (445)
325 cd04908 ACT_Bt0572_1 N-termina 20.0 2.2E+02 0.0048 17.2 7.7 44 121-164 14-58 (66)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=4.7e-32 Score=227.77 Aligned_cols=159 Identities=26% Similarity=0.413 Sum_probs=139.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
...++|||+|||+++|+++|+++|..||+|+.|+|+. ++.++|||||+|.++++|+.||..||+..|.+++|.|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 3678999999999999999999999999999999954 5678999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcCh
Q 023798 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNY 156 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~ 156 (277)
.+... ....++|||.|||..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.
T Consensus 185 ~p~~~-------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~ 245 (346)
T TIGR01659 185 RPGGE-------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKR 245 (346)
T ss_pred ccccc-------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCH
Confidence 64221 12346899999999999999999999999999999998753 35999999999
Q ss_pred hhHHHHHHHcCCceeccceeeeEEE
Q 023798 157 DDMKHAIKKLDDSEFRNAFSRAYVR 181 (277)
Q Consensus 157 ~~a~~a~~~l~g~~~~g~~~~~~i~ 181 (277)
++|++|++.|++..+.+......+.
T Consensus 246 e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 246 EEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred HHHHHHHHHhCCCccCCCceeEEEE
Confidence 9999999999999998754333333
No 2
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=4.7e-29 Score=182.42 Aligned_cols=185 Identities=63% Similarity=1.057 Sum_probs=158.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 1 MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 1 ~~~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
|+++.+++|||||||.++.+.+|.+||.+||.|.+|.|+....+.+||||+|+++.+|+.||..-+|..++|..|.|+++
T Consensus 1 ~~gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 1 MSGRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred CCCcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 78999999999999999999999999999999999999877777889999999999999999999999999999999999
Q ss_pred cCCCCCCCCCC-------CCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEE
Q 023798 81 HGGRGRSSSDR-------HSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDY 153 (277)
Q Consensus 81 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f 153 (277)
........... ..........++.......+.|.+||+..+|++|++++.+.|.|++..+.++. ++.|+|
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg---~GvV~~ 157 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG---VGVVEY 157 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc---ceeeee
Confidence 87763222111 00111112235667788999999999999999999999999999999999885 789999
Q ss_pred cChhhHHHHHHHcCCceeccceeeeEEEeeccccC
Q 023798 154 TNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHR 188 (277)
Q Consensus 154 ~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~~ 188 (277)
...++.+-|+.+|+...+...-.+..|.+......
T Consensus 158 ~r~eDMkYAvr~ld~~~~~seGe~~yirv~~~~~~ 192 (241)
T KOG0105|consen 158 LRKEDMKYAVRKLDDQKFRSEGETAYIRVRGDENR 192 (241)
T ss_pred eehhhHHHHHHhhccccccCcCcEeeEEecccCCC
Confidence 99999999999999998877666788888766544
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=2.8e-29 Score=215.33 Aligned_cols=152 Identities=24% Similarity=0.428 Sum_probs=136.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
+.++|||+|||+.+++++|+++|..||+|..|+|+. ++.++|||||+|.+.++|++||..|||..|.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 578999999999999999999999999999999954 57789999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecC----CCCEEEEEEcChh
Q 023798 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYD 157 (277)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~afv~f~~~~ 157 (277)
+... .....+|||+|||..+++++|.++|..||.|..+.++.+. ..+||||+|.+.+
T Consensus 82 ~~~~-------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~ 142 (352)
T TIGR01661 82 PSSD-------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRD 142 (352)
T ss_pred cccc-------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHH
Confidence 4321 1134689999999999999999999999999999998764 3569999999999
Q ss_pred hHHHHHHHcCCceeccce
Q 023798 158 DMKHAIKKLDDSEFRNAF 175 (277)
Q Consensus 158 ~a~~a~~~l~g~~~~g~~ 175 (277)
+|+.|++.|||..+.|..
T Consensus 143 ~A~~ai~~l~g~~~~g~~ 160 (352)
T TIGR01661 143 EADRAIKTLNGTTPSGCT 160 (352)
T ss_pred HHHHHHHHhCCCccCCCc
Confidence 999999999999998854
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=3.2e-29 Score=221.25 Aligned_cols=165 Identities=21% Similarity=0.342 Sum_probs=138.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
..++|||+|||+.+++++|+++|..||+|..|.|+. +++++|||||+|.+.++|+.|+..|||..|.|+.|.|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 468999999999999999999999999999999954 57899999999999999999999999999999999998654
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecC----CCCEEEEEEcChh
Q 023798 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYD 157 (277)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~afv~f~~~~ 157 (277)
........ ............+|||+||+..+++++|+++|+.||.|..+.+..++ .+|||||+|.+.+
T Consensus 186 ~~p~a~~~--------~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e 257 (612)
T TIGR01645 186 NMPQAQPI--------IDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQ 257 (612)
T ss_pred cccccccc--------cccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHH
Confidence 22111000 00001112245799999999999999999999999999999999875 3469999999999
Q ss_pred hHHHHHHHcCCceeccceee
Q 023798 158 DMKHAIKKLDDSEFRNAFSR 177 (277)
Q Consensus 158 ~a~~a~~~l~g~~~~g~~~~ 177 (277)
+|.+|++.||+..++|..++
T Consensus 258 ~A~kAI~amNg~elgGr~Lr 277 (612)
T TIGR01645 258 SQSEAIASMNLFDLGGQYLR 277 (612)
T ss_pred HHHHHHHHhCCCeeCCeEEE
Confidence 99999999999999995443
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.96 E-value=1.8e-28 Score=217.28 Aligned_cols=167 Identities=21% Similarity=0.313 Sum_probs=140.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
++.++|||+|||..+++++|+++|+.||+|..|.|+. ++.++|||||+|.+.++|.+||. |+|..|.|++|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 4678999999999999999999999999999999964 57789999999999999999998 9999999999999987
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC----CEEEEEEcCh
Q 023798 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNY 156 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~afv~f~~~ 156 (277)
............. . ....+...+|||+|||..+++++|+++|..||.|..+.+..+..+ +||||+|.+.
T Consensus 166 ~~~~~~~~~~~~~--~-----~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~ 238 (457)
T TIGR01622 166 QAEKNRAAKAATH--Q-----PGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDA 238 (457)
T ss_pred chhhhhhhhcccc--c-----CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCH
Confidence 5433221110000 0 011123679999999999999999999999999999999987654 6999999999
Q ss_pred hhHHHHHHHcCCceeccceeee
Q 023798 157 DDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 157 ~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
++|..|+..|+|..+.|+.+.+
T Consensus 239 e~A~~A~~~l~g~~i~g~~i~v 260 (457)
T TIGR01622 239 EEAKEALEVMNGFELAGRPIKV 260 (457)
T ss_pred HHHHHHHHhcCCcEECCEEEEE
Confidence 9999999999999999955443
No 6
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=5e-29 Score=192.66 Aligned_cols=169 Identities=20% Similarity=0.327 Sum_probs=144.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023798 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~ 83 (277)
--|||+.|.+.++-++|++.|.+||+|.+++++. +++++|||||.|.+.++|+.||..|||.+|+++.|.-.||..+
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 3589999999999999999999999999999954 6899999999999999999999999999999999999999754
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHH
Q 023798 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAI 163 (277)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~ 163 (277)
....+.. ...-..-.....+.+++||++|++..+++++|++.|..||.|..|.+++++ +|+||.|++.|.|..|+
T Consensus 143 p~e~n~~---~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q--GYaFVrF~tkEaAahAI 217 (321)
T KOG0148|consen 143 PSEMNGK---PLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ--GYAFVRFETKEAAAHAI 217 (321)
T ss_pred ccccCCC---CccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc--ceEEEEecchhhHHHHH
Confidence 4111100 000001123445688999999999999999999999999999999999985 49999999999999999
Q ss_pred HHcCCceeccceeeeEE
Q 023798 164 KKLDDSEFRNAFSRAYV 180 (277)
Q Consensus 164 ~~l~g~~~~g~~~~~~i 180 (277)
-++|+.++.|..+++..
T Consensus 218 v~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 218 VQMNNTEIGGQLVRCSW 234 (321)
T ss_pred HHhcCceeCceEEEEec
Confidence 99999999997765543
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=1.2e-27 Score=205.39 Aligned_cols=175 Identities=23% Similarity=0.340 Sum_probs=137.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCC--ceEEEEE
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVEL 79 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g--~~l~v~~ 79 (277)
..++|||+|||+.+++++|.++|..||.|..+.+.. ++.++|||||+|.+.++|+.|+..|||..+.| .+|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 457899999999999999999999999999999854 46789999999999999999999999999987 5788888
Q ss_pred ccCCCCCCCCCCCC----------CC------------------------------------------------CCCC--
Q 023798 80 AHGGRGRSSSDRHS----------SH------------------------------------------------SSGR-- 99 (277)
Q Consensus 80 a~~~~~~~~~~~~~----------~~------------------------------------------------~~~~-- 99 (277)
+............. .. ....
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 76433110000000 00 0000
Q ss_pred -------------CCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecC----CCCEEEEEEcChhhHHHH
Q 023798 100 -------------GRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHA 162 (277)
Q Consensus 100 -------------~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~afv~f~~~~~a~~a 162 (277)
........+.+|||+|||+.+++++|.++|++||.|..+.++.+. .+|||||+|.+.++|..|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 000001223469999999999999999999999999999999876 457999999999999999
Q ss_pred HHHcCCceeccceeeeE
Q 023798 163 IKKLDDSEFRNAFSRAY 179 (277)
Q Consensus 163 ~~~l~g~~~~g~~~~~~ 179 (277)
+..|||..++|+.+.+.
T Consensus 328 i~~lnG~~~~gr~i~V~ 344 (352)
T TIGR01661 328 ILSLNGYTLGNRVLQVS 344 (352)
T ss_pred HHHhCCCEECCeEEEEE
Confidence 99999999999554443
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=1.2e-27 Score=211.93 Aligned_cols=160 Identities=18% Similarity=0.248 Sum_probs=135.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHh--cCCCccCCceEEEEEccC
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRG--RDGYDFDGHRLRVELAHG 82 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~--l~g~~~~g~~l~v~~a~~ 82 (277)
|+++|||+|||+.+++++|+++|+.||.|..|.++. .++||||+|.+.++|+.|+.. +++..|.|++|.|+|+..
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~---~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP---GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC---CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 689999999999999999999999999999999974 468999999999999999986 478899999999999975
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHH
Q 023798 83 GRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHA 162 (277)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a 162 (277)
......... .. ..........|+|.||++.+++++|.++|+.||.|..|.++.+...++|||+|.+.++|.+|
T Consensus 78 ~~~~~~~~~--~~-----~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A 150 (481)
T TIGR01649 78 QEIKRDGNS--DF-----DSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHA 150 (481)
T ss_pred cccccCCCC--cc-----cCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHH
Confidence 432211100 00 00111234579999999999999999999999999999998877667999999999999999
Q ss_pred HHHcCCceeccc
Q 023798 163 IKKLDDSEFRNA 174 (277)
Q Consensus 163 ~~~l~g~~~~g~ 174 (277)
++.|||..+.+.
T Consensus 151 ~~~Lng~~i~~~ 162 (481)
T TIGR01649 151 KAALNGADIYNG 162 (481)
T ss_pred HHHhcCCcccCC
Confidence 999999999764
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=1.9e-27 Score=215.40 Aligned_cols=151 Identities=25% Similarity=0.421 Sum_probs=134.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCCC
Q 023798 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (277)
Q Consensus 8 ~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~~ 84 (277)
+|||+|||+++|+++|+++|+.||+|..|+|.. ++.++|||||+|.+.++|+.|+..||+..|.|+.|.|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 799999999999999999999999999999954 46789999999999999999999999999999999999975322
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC---CCEEEEEEcChhhHHH
Q 023798 85 GRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKH 161 (277)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~afv~f~~~~~a~~ 161 (277)
.. ......+|||+|||.++++++|.++|+.||.|..|.+..+.. .+||||+|.+.++|++
T Consensus 82 ~~-----------------~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~ 144 (562)
T TIGR01628 82 SL-----------------RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKA 144 (562)
T ss_pred cc-----------------cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHH
Confidence 11 111235899999999999999999999999999999988753 4799999999999999
Q ss_pred HHHHcCCceeccce
Q 023798 162 AIKKLDDSEFRNAF 175 (277)
Q Consensus 162 a~~~l~g~~~~g~~ 175 (277)
|++.++|..+.|+.
T Consensus 145 Ai~~lng~~~~~~~ 158 (562)
T TIGR01628 145 AIQKVNGMLLNDKE 158 (562)
T ss_pred HHHHhcccEecCce
Confidence 99999999999854
No 10
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.95 E-value=1.5e-26 Score=204.20 Aligned_cols=170 Identities=22% Similarity=0.354 Sum_probs=131.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCccC-CceEEEEEccC
Q 023798 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLRVELAHG 82 (277)
Q Consensus 6 ~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~-g~~l~v~~a~~ 82 (277)
.++|||+|||+++++++|+++|++||.|.+|+|+. ++.++|||||+|.+.++|++||+.||+..|. |+.|.|.++..
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~ 137 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD 137 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc
Confidence 48999999999999999999999999999999965 5789999999999999999999999998885 67666654431
Q ss_pred CCC-------C--------------------------C-CCCCCC------------------CCCCC-----C------
Q 023798 83 GRG-------R--------------------------S-SSDRHS------------------SHSSG-----R------ 99 (277)
Q Consensus 83 ~~~-------~--------------------------~-~~~~~~------------------~~~~~-----~------ 99 (277)
... . . ...... ..... +
T Consensus 138 ~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~Vd 217 (578)
T TIGR01648 138 NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVD 217 (578)
T ss_pred CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEE
Confidence 000 0 0 000000 00000 0
Q ss_pred --C--C---CCCCCccceEEccCCCCCCCHHHHHHHHhhc--CceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCce
Q 023798 100 --G--R---GVSRRSEYRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSE 170 (277)
Q Consensus 100 --~--~---~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~ 170 (277)
. . ........+|||+||+..+++++|+++|+.| |+|..|.++.+ ||||+|++.++|++|++.||+.+
T Consensus 218 wA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg----fAFVeF~s~e~A~kAi~~lnG~~ 293 (578)
T TIGR01648 218 WAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD----YAFVHFEDREDAVKAMDELNGKE 293 (578)
T ss_pred eecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC----eEEEEeCCHHHHHHHHHHhCCCE
Confidence 0 0 0011234679999999999999999999999 99999988765 99999999999999999999999
Q ss_pred eccceeeeE
Q 023798 171 FRNAFSRAY 179 (277)
Q Consensus 171 ~~g~~~~~~ 179 (277)
+.|+.+.+.
T Consensus 294 i~Gr~I~V~ 302 (578)
T TIGR01648 294 LEGSEIEVT 302 (578)
T ss_pred ECCEEEEEE
Confidence 999544333
No 11
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.95 E-value=1.3e-26 Score=205.26 Aligned_cols=170 Identities=18% Similarity=0.269 Sum_probs=136.4
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccC
Q 023798 4 RASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (277)
Q Consensus 4 ~~~~~l~v~nL~~-~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~ 82 (277)
.++++|||+||++ .+|+++|+++|+.||.|..|+++.+ .+|||||+|.+.++|..|+..|||..|.|+.|.|.++..
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~--~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN--KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 3678999999998 6999999999999999999999765 368999999999999999999999999999999999875
Q ss_pred CCCCCCCCC-----C---CCCCCC--CC--------CCCCCCccceEEccCCCCCCCHHHHHHHHhhcCc--eeEEEEEe
Q 023798 83 GRGRSSSDR-----H---SSHSSG--RG--------RGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFR 142 (277)
Q Consensus 83 ~~~~~~~~~-----~---~~~~~~--~~--------~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~--i~~~~~~~ 142 (277)
......... . ..+... .. ......+..+|||.|||..+++++|+++|..||. +..+.++.
T Consensus 351 ~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~ 430 (481)
T TIGR01649 351 QNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFP 430 (481)
T ss_pred ccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEec
Confidence 432211100 0 000000 00 0011235678999999999999999999999998 77787765
Q ss_pred cC--CCCEEEEEEcChhhHHHHHHHcCCceeccce
Q 023798 143 DG--SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (277)
Q Consensus 143 ~~--~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (277)
.. ..++|||+|.+.++|.+|+..||+..+.++.
T Consensus 431 ~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~ 465 (481)
T TIGR01649 431 KDNERSKMGLLEWESVEDAVEALIALNHHQLNEPN 465 (481)
T ss_pred CCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCC
Confidence 43 2469999999999999999999999999864
No 12
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.1e-26 Score=191.21 Aligned_cols=171 Identities=23% Similarity=0.315 Sum_probs=136.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccC-CceEEEEEcc
Q 023798 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLRVELAH 81 (277)
Q Consensus 6 ~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~-g~~l~v~~a~ 81 (277)
-|-||||.||.++.|++|..||++.|+|-++.|++ ++.++|||||.|.+.+.|++|+..||+.+|. |+.|.|..+.
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv 162 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV 162 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee
Confidence 37899999999999999999999999999999965 5899999999999999999999999999985 8988887765
Q ss_pred CCC-------CCCC---------------------------CCC-----------------------CCCCCCCC-----
Q 023798 82 GGR-------GRSS---------------------------SDR-----------------------HSSHSSGR----- 99 (277)
Q Consensus 82 ~~~-------~~~~---------------------------~~~-----------------------~~~~~~~~----- 99 (277)
... +... ... +....-++
T Consensus 163 an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tV 242 (506)
T KOG0117|consen 163 ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITV 242 (506)
T ss_pred ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCccee
Confidence 211 0000 000 00000000
Q ss_pred --------CCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCcee
Q 023798 100 --------GRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 171 (277)
Q Consensus 100 --------~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~ 171 (277)
........-..|||.||+.++|++.|+++|.+||.|..|..+.| ||||.|.+.++|.+|++.+||+++
T Consensus 243 dWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkel 318 (506)
T KOG0117|consen 243 DWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKEL 318 (506)
T ss_pred eccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCcee
Confidence 00011124467999999999999999999999999999999988 999999999999999999999999
Q ss_pred ccceeeeEE
Q 023798 172 RNAFSRAYV 180 (277)
Q Consensus 172 ~g~~~~~~i 180 (277)
+|..+.+-+
T Consensus 319 dG~~iEvtL 327 (506)
T KOG0117|consen 319 DGSPIEVTL 327 (506)
T ss_pred cCceEEEEe
Confidence 996654433
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=4.7e-26 Score=204.51 Aligned_cols=171 Identities=19% Similarity=0.291 Sum_probs=131.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcc------------CceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCcc
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKY------------GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF 70 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~------------G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~ 70 (277)
+...++|||||||+.+|+++|.++|..| +.|..+.+. ..+|||||+|.+.++|..||. |||..|
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~---~~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN---KEKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC---CCCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 3467899999999999999999999975 244444443 458999999999999999996 999999
Q ss_pred CCceEEEEEccCCCCCCCCCCCC------CCCC----CCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEE
Q 023798 71 DGHRLRVELAHGGRGRSSSDRHS------SHSS----GRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQV 140 (277)
Q Consensus 71 ~g~~l~v~~a~~~~~~~~~~~~~------~~~~----~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~ 140 (277)
.|..|.|.........+...... .... ............+|||+|||..+++++|+++|..||.|..+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 99999997654333111100000 0000 0011112235579999999999999999999999999999999
Q ss_pred EecC----CCCEEEEEEcChhhHHHHHHHcCCceeccceee
Q 023798 141 FRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (277)
Q Consensus 141 ~~~~----~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (277)
+.+. ..|||||+|.+.++|..|++.|+|..+.|..+.
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~ 368 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLH 368 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 8774 356999999999999999999999999996543
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=5.1e-26 Score=204.30 Aligned_cols=173 Identities=19% Similarity=0.339 Sum_probs=136.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
+.++|||+|||..+++++|+++|+.||.|..+.|.. ++.++|||||+|.+.++|..||..|||..|.|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 468999999999999999999999999999999854 57889999999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCCCC-----CCCC----CCCCCCCccceEEccCCCCCC----------CHHHHHHHHhhcCceeEEEEEe
Q 023798 82 GGRGRSSSDRHSSH-----SSGR----GRGVSRRSEYRVLVTGLPSSA----------SWQDLKDHMRRAGDVCFSQVFR 142 (277)
Q Consensus 82 ~~~~~~~~~~~~~~-----~~~~----~~~~~~~~~~~l~v~~l~~~~----------~~~~l~~~f~~~g~i~~~~~~~ 142 (277)
.............. .... .......+..+|+|.||.... ..++|+++|.+||.|..|.|+.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~ 453 (509)
T TIGR01642 374 VGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPR 453 (509)
T ss_pred cCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeec
Confidence 55433222111100 0000 001122355688898885321 2367999999999999999986
Q ss_pred cC-------CCCEEEEEEcChhhHHHHHHHcCCceeccceee
Q 023798 143 DG-------SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (277)
Q Consensus 143 ~~-------~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (277)
.. ..|+|||+|.+.++|++|+..|||..|+|+.+.
T Consensus 454 ~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~ 495 (509)
T TIGR01642 454 PNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVV 495 (509)
T ss_pred cCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 52 236899999999999999999999999996553
No 15
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.95 E-value=3.7e-27 Score=184.08 Aligned_cols=147 Identities=28% Similarity=0.523 Sum_probs=136.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCCCCC
Q 023798 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGR 86 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (277)
-+|||||||.++++.+|+.||++||.|..|.|+ +.||||..++...|..||..|||..|+|..|.|+-++.+.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-----KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk- 76 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSK- 76 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-----cccceEEeecccccHHHHhhcccceecceEEEEEeccccCC-
Confidence 479999999999999999999999999999998 77999999999999999999999999999999999875432
Q ss_pred CCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHc
Q 023798 87 SSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL 166 (277)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l 166 (277)
..++|+|+||.+.++..+|+..|++||.++.+++.++ |+||.|+-.++|..|+..|
T Consensus 77 --------------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd----y~fvh~d~~eda~~air~l 132 (346)
T KOG0109|consen 77 --------------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD----YAFVHFDRAEDAVEAIRGL 132 (346)
T ss_pred --------------------CccccccCCCCccccCHHHhhhhcccCCceeeeeecc----eeEEEEeeccchHHHHhcc
Confidence 3469999999999999999999999999999999998 9999999999999999999
Q ss_pred CCceeccceeeeEEEee
Q 023798 167 DDSEFRNAFSRAYVRVR 183 (277)
Q Consensus 167 ~g~~~~g~~~~~~i~~~ 183 (277)
++.++.|+..++.+...
T Consensus 133 ~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 133 DNTEFQGKRMHVQLSTS 149 (346)
T ss_pred cccccccceeeeeeecc
Confidence 99999998776665544
No 16
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=3.3e-26 Score=187.64 Aligned_cols=164 Identities=24% Similarity=0.424 Sum_probs=139.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCc-cCC--ceEEEE
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYD-FDG--HRLRVE 78 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~-~~g--~~l~v~ 78 (277)
+.-+||||.||..++|.||+++|++||.|.+|.|++ ++.++|||||.|.+.++|.+|+..||+.. |.| .+|.|.
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 456899999999999999999999999999999965 57899999999999999999999999866 444 588888
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC---CCEEEEEEcC
Q 023798 79 LAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTN 155 (277)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~afv~f~~ 155 (277)
+|....... ..+.+|||+-|+..++|.+++++|.+||.|++|.|+.++. +|||||.|.+
T Consensus 113 ~Ad~E~er~------------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fst 174 (510)
T KOG0144|consen 113 YADGERERI------------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFST 174 (510)
T ss_pred ccchhhhcc------------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEeh
Confidence 887544321 2356999999999999999999999999999999999864 4799999999
Q ss_pred hhhHHHHHHHcCCce-eccceeeeEEEeeccccC
Q 023798 156 YDDMKHAIKKLDDSE-FRNAFSRAYVRVREYDHR 188 (277)
Q Consensus 156 ~~~a~~a~~~l~g~~-~~g~~~~~~i~~~~~~~~ 188 (277)
.+-|..|++.|||.. +.|+. ..+.|...+..
T Consensus 175 ke~A~~Aika~ng~~tmeGcs--~PLVVkFADtq 206 (510)
T KOG0144|consen 175 KEMAVAAIKALNGTQTMEGCS--QPLVVKFADTQ 206 (510)
T ss_pred HHHHHHHHHhhccceeeccCC--CceEEEecccC
Confidence 999999999999974 66754 45555554444
No 17
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.94 E-value=1.3e-25 Score=203.47 Aligned_cols=176 Identities=22% Similarity=0.345 Sum_probs=141.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCccC----CceEEEE
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD----GHRLRVE 78 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~----g~~l~v~ 78 (277)
..++|||+|||.++|+++|+++|..||+|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|. |..|.|.
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~ 256 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVG 256 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEee
Confidence 457899999999999999999999999999999954 4677899999999999999999999999999 9999998
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecC---CCCEEEEEEcC
Q 023798 79 LAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTN 155 (277)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~---~~~~afv~f~~ 155 (277)
++......... ...................+|||+||+..+++++|+++|+.||.|..+.++.+. .++||||+|.+
T Consensus 257 ~a~~k~er~~~-~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~ 335 (562)
T TIGR01628 257 RAQKRAEREAE-LRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSN 335 (562)
T ss_pred cccChhhhHHH-HHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCC
Confidence 87643322100 000000000011123456789999999999999999999999999999999874 34799999999
Q ss_pred hhhHHHHHHHcCCceeccceeeeEEE
Q 023798 156 YDDMKHAIKKLDDSEFRNAFSRAYVR 181 (277)
Q Consensus 156 ~~~a~~a~~~l~g~~~~g~~~~~~i~ 181 (277)
.++|.+|+..|||..++|+.+.+.+.
T Consensus 336 ~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 336 PEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred HHHHHHHHHHhcCCeeCCceeEEEec
Confidence 99999999999999999966554443
No 18
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1.2e-25 Score=173.24 Aligned_cols=161 Identities=22% Similarity=0.378 Sum_probs=140.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
...+.|.|.-||.++|+++|+.||..+|+|..|++.. ++++.||+||.|-++++|++|+..|||..+..+.|+|.||
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 3457789999999999999999999999999999954 6899999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcCh
Q 023798 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNY 156 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~ 156 (277)
.+... ...+..|||.+||..+++.+|+++|++||.|+.-.+..+.- +|.+||.|...
T Consensus 119 RPSs~-------------------~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr 179 (360)
T KOG0145|consen 119 RPSSD-------------------SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKR 179 (360)
T ss_pred cCChh-------------------hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecch
Confidence 75432 23456899999999999999999999999999877777653 45899999999
Q ss_pred hhHHHHHHHcCCceeccceeeeEEEeecc
Q 023798 157 DDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (277)
Q Consensus 157 ~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 185 (277)
.+|++|+..|||..--|+. ..|.|...
T Consensus 180 ~EAe~AIk~lNG~~P~g~t--epItVKFa 206 (360)
T KOG0145|consen 180 IEAEEAIKGLNGQKPSGCT--EPITVKFA 206 (360)
T ss_pred hHHHHHHHhccCCCCCCCC--CCeEEEec
Confidence 9999999999999888753 44555433
No 19
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=1.3e-25 Score=164.08 Aligned_cols=166 Identities=22% Similarity=0.350 Sum_probs=141.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEE
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 79 (277)
.+...|||||||+..++++.|.+||-+.|+|..++++. +...+|||||+|.++|+|+.|+..||...|.|++|.|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 35678999999999999999999999999999999965 456799999999999999999999999999999999998
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeE-EEEEecCC----CCEEEEEEc
Q 023798 80 AHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDGS----GTTGIVDYT 154 (277)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~-~~~~~~~~----~~~afv~f~ 154 (277)
+.... .....+.++||+||.+.+.+..|-+.|+.||.+.. ..++.++. +++|||.|.
T Consensus 86 as~~~------------------~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~ 147 (203)
T KOG0131|consen 86 ASAHQ------------------KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYA 147 (203)
T ss_pred ccccc------------------ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEech
Confidence 86211 11223368999999999999999999999998775 45666544 359999999
Q ss_pred ChhhHHHHHHHcCCceeccceeeeEEEeeccc
Q 023798 155 NYDDMKHAIKKLDDSEFRNAFSRAYVRVREYD 186 (277)
Q Consensus 155 ~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~ 186 (277)
+.+.+..|+..|+|..+.++..++.+...+..
T Consensus 148 sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 148 SFEASDAAIGSMNGQYLCNRPITVSYAFKKDT 179 (203)
T ss_pred hHHHHHHHHHHhccchhcCCceEEEEEEecCC
Confidence 99999999999999999997766666555443
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=3.2e-24 Score=190.20 Aligned_cols=175 Identities=21% Similarity=0.347 Sum_probs=135.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccC
Q 023798 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (277)
Q Consensus 6 ~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~ 82 (277)
+++|||+|||+.+|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.|+..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 58999999999999999999999999999999964 457799999999999999999999999999999999999753
Q ss_pred CCCCCCCC-------------C-----------------C---CC-CCCC----------------C-------------
Q 023798 83 GRGRSSSD-------------R-----------------H---SS-HSSG----------------R------------- 99 (277)
Q Consensus 83 ~~~~~~~~-------------~-----------------~---~~-~~~~----------------~------------- 99 (277)
........ . . .. ..+. .
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 21110000 0 0 00 0000 0
Q ss_pred ----C-C---CCCCCccceEEccCCCCCCC----------HHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHH
Q 023798 100 ----G-R---GVSRRSEYRVLVTGLPSSAS----------WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKH 161 (277)
Q Consensus 100 ----~-~---~~~~~~~~~l~v~~l~~~~~----------~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~ 161 (277)
. . .........|+|.||....+ .++|++.|.+||.|..+.+......|++||+|.+.++|..
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~ 425 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALA 425 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHH
Confidence 0 0 00113456788888754433 3689999999999999999877777899999999999999
Q ss_pred HHHHcCCceeccceeeeEE
Q 023798 162 AIKKLDDSEFRNAFSRAYV 180 (277)
Q Consensus 162 a~~~l~g~~~~g~~~~~~i 180 (277)
|++.|||..++|+.+.+..
T Consensus 426 A~~~lnGr~f~gr~i~~~~ 444 (457)
T TIGR01622 426 AFQALNGRYFGGKMITAAF 444 (457)
T ss_pred HHHHhcCcccCCeEEEEEE
Confidence 9999999999997665443
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=2.3e-24 Score=181.65 Aligned_cols=177 Identities=20% Similarity=0.331 Sum_probs=144.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023798 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~ 83 (277)
.||||++||+.++.++|.++|+.+|+|..+.+.. ....+|||||.|.-.++++.|+..+++..|.|+.|.|.++...
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 8999999999999999999999999999999954 3467999999999999999999999999999999999999865
Q ss_pred CCCCCCCCCCCCCC-----CCCCC--CCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC---CEEEEEE
Q 023798 84 RGRSSSDRHSSHSS-----GRGRG--VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDY 153 (277)
Q Consensus 84 ~~~~~~~~~~~~~~-----~~~~~--~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~afv~f 153 (277)
...........-.. ..... ....+.+.|+|.|||+.+.+.+|+.+|+.||.|..|.|+....+ |||||.|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 54331111000000 00001 11234789999999999999999999999999999999977655 5999999
Q ss_pred cChhhHHHHHHHcCCceeccceeeeEEEee
Q 023798 154 TNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (277)
Q Consensus 154 ~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 183 (277)
.+..+|..|++.+|+..|+|+.+-+-+.|.
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 999999999999999999996555544444
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=2.4e-23 Score=175.49 Aligned_cols=179 Identities=21% Similarity=0.356 Sum_probs=138.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccC
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~ 82 (277)
+.-.|+|.|||+.+...+|+.+|+.||.|..|.|+. ++..+|||||+|.+..+|..|+..+|+..|+|++|.|.||..
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 356799999999999999999999999999999954 677789999999999999999999999999999999999974
Q ss_pred CCCCCCCC-------------------------------------CCCCCCC---------C----------C--CC---
Q 023798 83 GRGRSSSD-------------------------------------RHSSHSS---------G----------R--GR--- 101 (277)
Q Consensus 83 ~~~~~~~~-------------------------------------~~~~~~~---------~----------~--~~--- 101 (277)
........ ......+ . . ..
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 33211100 0000000 0 0 00
Q ss_pred ----------CCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC----CEEEEEEcChhhHHHHHHHc-
Q 023798 102 ----------GVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKL- 166 (277)
Q Consensus 102 ----------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l- 166 (277)
.....-+.+|||.|||+++++++|.++|++||.|.++.+..++.+ |.|||.|.+..+|+.++...
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 000012378999999999999999999999999999999888654 59999999999999999876
Q ss_pred ----CC-ceeccceeeeEEEee
Q 023798 167 ----DD-SEFRNAFSRAYVRVR 183 (277)
Q Consensus 167 ----~g-~~~~g~~~~~~i~~~ 183 (277)
.| ..+.|+.+.+...+.
T Consensus 356 pa~e~g~~ll~GR~Lkv~~Av~ 377 (678)
T KOG0127|consen 356 PASEDGSVLLDGRLLKVTLAVT 377 (678)
T ss_pred ccCCCceEEEeccEEeeeeccc
Confidence 33 567776655554443
No 23
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=5.8e-23 Score=158.38 Aligned_cols=175 Identities=23% Similarity=0.343 Sum_probs=140.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCceeEEEee---cCCCCCceEEEEEcChHHHHHHHHhcCCCccCCc--eEEEEEc
Q 023798 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH--RLRVELA 80 (277)
Q Consensus 6 ~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~---~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~--~l~v~~a 80 (277)
...|||.+||+.+|..+|.++|++||.|..-.|. .++.++|.|||.|...++|+.||..|||..-.|. +|.|.|+
T Consensus 127 ~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFa 206 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFA 206 (360)
T ss_pred ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEec
Confidence 3579999999999999999999999998877763 3688999999999999999999999999987664 8999999
Q ss_pred cCCCCCCCCCC-------CC---------------------------CCCCC----------CCCCCCCCccceEEccCC
Q 023798 81 HGGRGRSSSDR-------HS---------------------------SHSSG----------RGRGVSRRSEYRVLVTGL 116 (277)
Q Consensus 81 ~~~~~~~~~~~-------~~---------------------------~~~~~----------~~~~~~~~~~~~l~v~~l 116 (277)
........... +. .+.+. ...+.....++.|||-||
T Consensus 207 nnPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNL 286 (360)
T KOG0145|consen 207 NNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNL 286 (360)
T ss_pred CCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEec
Confidence 75432211100 00 00000 001222346899999999
Q ss_pred CCCCCHHHHHHHHhhcCceeEEEEEecC----CCCEEEEEEcChhhHHHHHHHcCCceeccceeeeEE
Q 023798 117 PSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (277)
Q Consensus 117 ~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 180 (277)
.+++.+..|.++|.+||.|..++++.|. .+||+||.+.+.++|..|+..|||..++++.+-+..
T Consensus 287 spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsF 354 (360)
T KOG0145|consen 287 SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 354 (360)
T ss_pred CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEE
Confidence 9999999999999999999999999885 457999999999999999999999999997654443
No 24
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=1.4e-23 Score=161.28 Aligned_cols=163 Identities=38% Similarity=0.658 Sum_probs=133.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCCCCC
Q 023798 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGR 86 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (277)
..||||+||+.+.+.+|..||..||.|.++.|+ .||+||+|.++.+|..|+..||+..|.|..+.|+|+......
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~ 76 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-----NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRG 76 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-----cccceeccCchhhhhcccchhcCceecceeeeeecccccccc
Confidence 468999999999999999999999999999997 689999999999999999999999999999999998854322
Q ss_pred CCCCCCCCCCC-CCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHH
Q 023798 87 SSSDRHSSHSS-GRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKK 165 (277)
Q Consensus 87 ~~~~~~~~~~~-~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~ 165 (277)
..........+ ......+....+.+.|.+++..+.+.+|.++|.++|.+....+ ..+++||+|...++|..|+..
T Consensus 77 ~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~ra~~~ 152 (216)
T KOG0106|consen 77 RGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKRALEK 152 (216)
T ss_pred cCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh----hccccceeehhhhhhhhcchh
Confidence 21111000111 1223345667889999999999999999999999999955554 233899999999999999999
Q ss_pred cCCceeccceeee
Q 023798 166 LDDSEFRNAFSRA 178 (277)
Q Consensus 166 l~g~~~~g~~~~~ 178 (277)
|++..+.++.++.
T Consensus 153 l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 153 LDGKKLNGRRISV 165 (216)
T ss_pred ccchhhcCceeee
Confidence 9999999966555
No 25
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=3.3e-22 Score=145.48 Aligned_cols=80 Identities=49% Similarity=0.817 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~ 83 (277)
+-.++||||||+..+++.||..+|..||+|..|+|.. .+.|||||||+++.+|+.|+..|+|..|.|..|.|+++...
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr--nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR--NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee--cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 3578999999999999999999999999999999965 45899999999999999999999999999999999999765
Q ss_pred CC
Q 023798 84 RG 85 (277)
Q Consensus 84 ~~ 85 (277)
..
T Consensus 86 ~r 87 (195)
T KOG0107|consen 86 PR 87 (195)
T ss_pred cc
Confidence 44
No 26
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=1e-23 Score=169.81 Aligned_cols=163 Identities=21% Similarity=0.354 Sum_probs=136.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023798 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~ 83 (277)
|.||||.|.+.+.|+.|+..|.+||+|++|.+.| +++.+|||||+|+-+|.|+.|++.|||..++|+.|+|.....-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 6899999999999999999999999999999966 5789999999999999999999999999999999999743211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhH
Q 023798 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDM 159 (277)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a 159 (277)
....+ -...-.......+.|||..+.+++++++|+..|..||+|..|.+..++. +||+||+|.+....
T Consensus 194 pQAQp--------iID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~ 265 (544)
T KOG0124|consen 194 PQAQP--------IIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQ 265 (544)
T ss_pred cccch--------HHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccch
Confidence 00000 0000001223557999999999999999999999999999999998864 46999999999999
Q ss_pred HHHHHHcCCceeccceee
Q 023798 160 KHAIKKLDDSEFRNAFSR 177 (277)
Q Consensus 160 ~~a~~~l~g~~~~g~~~~ 177 (277)
.+|+..||-..++|.+++
T Consensus 266 ~eAiasMNlFDLGGQyLR 283 (544)
T KOG0124|consen 266 SEAIASMNLFDLGGQYLR 283 (544)
T ss_pred HHHhhhcchhhcccceEe
Confidence 999999999999995543
No 27
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=9.2e-22 Score=143.19 Aligned_cols=78 Identities=19% Similarity=0.231 Sum_probs=69.0
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccceeeeEEEeecc
Q 023798 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 185 (277)
.+++|||+||+..+++.+|+.+|..||.|..|+|..++ .+||||+|++..||+.|+..|+|..|.|..+++++.....
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 36899999999999999999999999999999999954 5699999999999999999999999999666555554433
No 28
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=2e-21 Score=164.46 Aligned_cols=141 Identities=26% Similarity=0.387 Sum_probs=127.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCCCCC
Q 023798 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGR 86 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (277)
..|||| +++|+.+|.++|+++|+|..+++-.+..+.|||||.|.++++|..||..||...+.|++|.+-|+....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~-- 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP-- 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC--
Confidence 479999 999999999999999999999993221289999999999999999999999999999999999986422
Q ss_pred CCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC--CEEEEEEcChhhHHHHHH
Q 023798 87 SSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG--TTGIVDYTNYDDMKHAIK 164 (277)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~--~~afv~f~~~~~a~~a~~ 164 (277)
..+||.||++.++..+|.++|+.||+|..|.+..+..+ +| ||+|++.++|++|++
T Consensus 77 ----------------------~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~ 133 (369)
T KOG0123|consen 77 ----------------------SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIE 133 (369)
T ss_pred ----------------------ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHH
Confidence 12999999999999999999999999999999998765 58 999999999999999
Q ss_pred HcCCceeccce
Q 023798 165 KLDDSEFRNAF 175 (277)
Q Consensus 165 ~l~g~~~~g~~ 175 (277)
.+||..+.|+.
T Consensus 134 ~~ng~ll~~kk 144 (369)
T KOG0123|consen 134 KLNGMLLNGKK 144 (369)
T ss_pred HhcCcccCCCe
Confidence 99999999943
No 29
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.87 E-value=1.9e-21 Score=168.97 Aligned_cols=160 Identities=23% Similarity=0.411 Sum_probs=134.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec--CC----CCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PP----RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~--~~----~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
++|||.||++.+|.++|..+|...|.|..+.|.. ++ .+.|||||+|.++++|+.|+..|+|..|+|..|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 3399999999999999999999999999998843 22 24599999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEec----CCCCEEEEEEcCh
Q 023798 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD----GSGTTGIVDYTNY 156 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~----~~~~~afv~f~~~ 156 (277)
...... ... ........+++|+|.|||..++..+++++|..||.+..|.++.. ...|||||+|-++
T Consensus 596 ~~k~~~-~~g---------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~ 665 (725)
T KOG0110|consen 596 ENKPAS-TVG---------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTP 665 (725)
T ss_pred cCcccc-ccc---------cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCc
Confidence 721111 100 11122334789999999999999999999999999999999876 2346999999999
Q ss_pred hhHHHHHHHcCCceecccee
Q 023798 157 DDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 157 ~~a~~a~~~l~g~~~~g~~~ 176 (277)
.+|..|+++|...-+.|+.+
T Consensus 666 ~ea~nA~~al~STHlyGRrL 685 (725)
T KOG0110|consen 666 REAKNAFDALGSTHLYGRRL 685 (725)
T ss_pred HHHHHHHHhhcccceechhh
Confidence 99999999999988888543
No 30
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.86 E-value=7.6e-21 Score=141.92 Aligned_cols=81 Identities=36% Similarity=0.592 Sum_probs=75.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
..++|.|-||.+.++.++|+.+|++||.|.+|.|++ +.+++|||||.|.+..+|+.|++.|+|.+|+|+.|.|++|.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 467899999999999999999999999999999965 67899999999999999999999999999999999999997
Q ss_pred CCCC
Q 023798 82 GGRG 85 (277)
Q Consensus 82 ~~~~ 85 (277)
....
T Consensus 92 ygr~ 95 (256)
T KOG4207|consen 92 YGRP 95 (256)
T ss_pred cCCC
Confidence 5443
No 31
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.85 E-value=6e-20 Score=139.85 Aligned_cols=171 Identities=22% Similarity=0.327 Sum_probs=138.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHH----HHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEE
Q 023798 1 MSSRASRTLYVGNLPGDIREREVED----LFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (277)
Q Consensus 1 ~~~~~~~~l~v~nL~~~~t~~~L~~----~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~ 76 (277)
|+-.++.||||.||+..+..++|+. ||++||.|.+|....+.+.+|.|||.|.+.+.|-.|+..|+|..|.|+++.
T Consensus 4 ~~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 4 MSVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred cccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3446777999999999999999888 999999999999988999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCC--------------C------CCCCCCC---------CCC-C-CCCCCccceEEccCCCCCCCHHHH
Q 023798 77 VELAHGGRGRSSS--------------D------RHSSHSS---------GRG-R-GVSRRSEYRVLVTGLPSSASWQDL 125 (277)
Q Consensus 77 v~~a~~~~~~~~~--------------~------~~~~~~~---------~~~-~-~~~~~~~~~l~v~~l~~~~~~~~l 125 (277)
|+||......-.. . ......+ .+. . .....+...+++.|||.+++.+.+
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 9999843211100 0 0000000 000 0 123457789999999999999999
Q ss_pred HHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceec
Q 023798 126 KDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (277)
Q Consensus 126 ~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~ 172 (277)
..+|.+|.....+.+..... +.|||+|.+...|..|...+.+..+.
T Consensus 164 ~~lf~qf~g~keir~i~~~~-~iAfve~~~d~~a~~a~~~lq~~~it 209 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIPPRS-GIAFVEFLSDRQASAAQQALQGFKIT 209 (221)
T ss_pred HHHHhhCcccceeEeccCCC-ceeEEecchhhhhHHHhhhhccceec
Confidence 99999999988888876543 48999999999999999999998876
No 32
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=5.7e-20 Score=142.48 Aligned_cols=176 Identities=22% Similarity=0.316 Sum_probs=137.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCcc-CC--ceEEEEE
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDF-DG--HRLRVEL 79 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~-~g--~~l~v~~ 79 (277)
+.++||||.|.+.-.|+|++.+|..||+|.+|.+.. ++.++|||||.|.+..+|+.||..|||..- .| -.|.|+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 578999999999999999999999999999999954 688999999999999999999999999764 34 4789999
Q ss_pred ccCCCC--------------------------------------------------------------------------
Q 023798 80 AHGGRG-------------------------------------------------------------------------- 85 (277)
Q Consensus 80 a~~~~~-------------------------------------------------------------------------- 85 (277)
+...+.
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 870000
Q ss_pred ----CCCCCCCC-----------------CCCC------C----------C-----------------------------
Q 023798 86 ----RSSSDRHS-----------------SHSS------G----------R----------------------------- 99 (277)
Q Consensus 86 ----~~~~~~~~-----------------~~~~------~----------~----------------------------- 99 (277)
......+. .+.+ + +
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 00000000 0000 0 0
Q ss_pred -------------------CCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC----CEEEEEEcCh
Q 023798 100 -------------------GRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNY 156 (277)
Q Consensus 100 -------------------~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~afv~f~~~ 156 (277)
......+.+|+|||-.||.+..+.+|.++|-.||.|...+++.|..+ -|+||.|.++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 00011137899999999999999999999999999999999888544 4999999999
Q ss_pred hhHHHHHHHcCCceeccceeeeEE
Q 023798 157 DDMKHAIKKLDDSEFRNAFSRAYV 180 (277)
Q Consensus 157 ~~a~~a~~~l~g~~~~g~~~~~~i 180 (277)
..|+.|+..|||..|+-+++++.+
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhh
Confidence 999999999999999986554443
No 33
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1.2e-19 Score=153.62 Aligned_cols=158 Identities=25% Similarity=0.413 Sum_probs=136.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecC-CCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccC
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~-~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~ 82 (277)
++...|||.||++.++..+|.++|+.||+|.+|++..+ ..++|| ||+|.+++.|.+|+..|||..+.|+.|.|.....
T Consensus 74 rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 74 RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred cCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 45566999999999999999999999999999999543 348999 9999999999999999999999999999988865
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC---CCEEEEEEcChhhH
Q 023798 83 GRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDM 159 (277)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~afv~f~~~~~a 159 (277)
......... ......+.++|.+++.+.+++.|.++|..+|.|..+.++.+.. .+|+||.|++.++|
T Consensus 153 ~~er~~~~~-----------~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a 221 (369)
T KOG0123|consen 153 KEEREAPLG-----------EYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDA 221 (369)
T ss_pred hhhhccccc-----------chhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHH
Confidence 443221111 1233457899999999999999999999999999999998743 46999999999999
Q ss_pred HHHHHHcCCceecc
Q 023798 160 KHAIKKLDDSEFRN 173 (277)
Q Consensus 160 ~~a~~~l~g~~~~g 173 (277)
..|++.|++..+.+
T Consensus 222 ~~av~~l~~~~~~~ 235 (369)
T KOG0123|consen 222 KKAVETLNGKIFGD 235 (369)
T ss_pred HHHHHhccCCcCCc
Confidence 99999999999986
No 34
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.83 E-value=1.1e-20 Score=153.42 Aligned_cols=166 Identities=15% Similarity=0.144 Sum_probs=119.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecC------CCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEE
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP------PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~------~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 78 (277)
....|.|.||.+++|.++++.||+.+|.|.++.|..+ +.....|||.|.+...+..|.+ |.++.|-++.|.|.
T Consensus 6 ~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~ 84 (479)
T KOG4676|consen 6 SLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVR 84 (479)
T ss_pred CCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEE
Confidence 4458999999999999999999999999999999442 2335689999999999999999 66777777777666
Q ss_pred EccCCCCCCC---------CCCCCCCCCCCCC------------------CCCC----------CccceEEccCCCCCCC
Q 023798 79 LAHGGRGRSS---------SDRHSSHSSGRGR------------------GVSR----------RSEYRVLVTGLPSSAS 121 (277)
Q Consensus 79 ~a~~~~~~~~---------~~~~~~~~~~~~~------------------~~~~----------~~~~~l~v~~l~~~~~ 121 (277)
+......+.. ...+....+++-. .+.. .-..+++|++|+..+.
T Consensus 85 p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~ 164 (479)
T KOG4676|consen 85 PYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAI 164 (479)
T ss_pred ecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhc
Confidence 5542221111 0000000000000 0000 1235688999999999
Q ss_pred HHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceec
Q 023798 122 WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (277)
Q Consensus 122 ~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~ 172 (277)
..++.+.|..+|++.+..+.......+|.++|........|+. ++|..+.
T Consensus 165 l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 165 LPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred chhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 9999999999999999988887777789999998888888887 5555443
No 35
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.82 E-value=1.7e-18 Score=153.54 Aligned_cols=77 Identities=25% Similarity=0.494 Sum_probs=72.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
..++|||+||++++++++|+++|+.||+|..+.|.. ++.++|||||+|.+.++|.+|+..||+..|+|+.|.|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 457999999999999999999999999999999965 45789999999999999999999999999999999999876
No 36
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.82 E-value=4.6e-19 Score=134.01 Aligned_cols=169 Identities=23% Similarity=0.369 Sum_probs=129.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCC----CceEEEEEcChHHHHHHHHhcCCCccC---CceEEE
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRP----PGYAFVEFEEARDAEDAIRGRDGYDFD---GHRLRV 77 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~----~g~afV~f~~~~~A~~a~~~l~g~~~~---g~~l~v 77 (277)
.-+||||.+||.++...+|..||..|--.....|+.+.+. +.+|||.|.+..+|.+|+..|||..|+ +..|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 4689999999999999999999999977777777665433 379999999999999999999999997 789999
Q ss_pred EEccCCCCCCCCCCCCCCCCC---------------------------------C-------------------------
Q 023798 78 ELAHGGRGRSSSDRHSSHSSG---------------------------------R------------------------- 99 (277)
Q Consensus 78 ~~a~~~~~~~~~~~~~~~~~~---------------------------------~------------------------- 99 (277)
++++...+.+........... +
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 999854432221100000000 0
Q ss_pred ---------CCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCce
Q 023798 100 ---------GRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSE 170 (277)
Q Consensus 100 ---------~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~ 170 (277)
........+.+|||.||.+++++++|+++|+.|.....+.+-.......||++|++.+.|..|+..|.|..
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 00011124578999999999999999999999988777666544433489999999999999999999998
Q ss_pred ecc
Q 023798 171 FRN 173 (277)
Q Consensus 171 ~~g 173 (277)
+-.
T Consensus 273 ~s~ 275 (284)
T KOG1457|consen 273 LSS 275 (284)
T ss_pred ecc
Confidence 753
No 37
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=8.6e-20 Score=150.20 Aligned_cols=180 Identities=24% Similarity=0.347 Sum_probs=142.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCc-cC--CceEEEEE
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYD-FD--GHRLRVEL 79 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~-~~--g~~l~v~~ 79 (277)
..++||||.|++.+||.+|+++|.+||.|.+|.|.. ++.++|||||.|.+.+-|..||+.|||.. +. ..+|.|.|
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 367899999999999999999999999999999966 57899999999999999999999999976 34 45899999
Q ss_pred ccCCCCCCCCC---------------------------------------------------------------------
Q 023798 80 AHGGRGRSSSD--------------------------------------------------------------------- 90 (277)
Q Consensus 80 a~~~~~~~~~~--------------------------------------------------------------------- 90 (277)
|...+......
T Consensus 203 ADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~ 282 (510)
T KOG0144|consen 203 ADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALAA 282 (510)
T ss_pred cccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhhh
Confidence 98111100000
Q ss_pred -----------C----------------C--------CC-----------------------CC--CC------------
Q 023798 91 -----------R----------------H--------SS-----------------------HS--SG------------ 98 (277)
Q Consensus 91 -----------~----------------~--------~~-----------------------~~--~~------------ 98 (277)
. + .. +. +.
T Consensus 283 ~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa 362 (510)
T KOG0144|consen 283 AATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVAA 362 (510)
T ss_pred hcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcccc
Confidence 0 0 00 00 00
Q ss_pred ----------------------------------------------------CCCCCCCCccceEEccCCCCCCCHHHHH
Q 023798 99 ----------------------------------------------------RGRGVSRRSEYRVLVTGLPSSASWQDLK 126 (277)
Q Consensus 99 ----------------------------------------------------~~~~~~~~~~~~l~v~~l~~~~~~~~l~ 126 (277)
.......+.+..+||.+||-+.-+.+|-
T Consensus 363 ~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l~ 442 (510)
T KOG0144|consen 363 SLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDLI 442 (510)
T ss_pred cccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHHH
Confidence 0000001156779999999999999999
Q ss_pred HHHhhcCceeEEEEEecCCCC----EEEEEEcChhhHHHHHHHcCCceeccceeeeEEEeec
Q 023798 127 DHMRRAGDVCFSQVFRDGSGT----TGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (277)
Q Consensus 127 ~~f~~~g~i~~~~~~~~~~~~----~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~ 184 (277)
..|..||.|...+++.|+.++ |+||.|++..+|+.|+..|||..++.+..++.++++.
T Consensus 443 ~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~ 504 (510)
T KOG0144|consen 443 ATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDR 504 (510)
T ss_pred HHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeecc
Confidence 999999999999999998765 8999999999999999999999999987666665543
No 38
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.82 E-value=1.4e-20 Score=159.38 Aligned_cols=174 Identities=21% Similarity=0.299 Sum_probs=141.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
++.+|||+-.|+..+++.+|.+||+.+|.|.+|.++. +..++|.|||+|.+.+.+..||. |.|..+.|.+|.|+..
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEeccc
Confidence 4567899999999999999999999999999999954 56789999999999999999997 9999999999999987
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecC----CCCEEEEEEcCh
Q 023798 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNY 156 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~afv~f~~~ 156 (277)
...+...... .....+. .-..+...|||+||..++++++|+.+|..||.|..|.+..+. .++|+||+|.+.
T Consensus 256 Eaeknr~a~~-s~a~~~k----~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~ 330 (549)
T KOG0147|consen 256 EAEKNRAANA-SPALQGK----GFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNK 330 (549)
T ss_pred HHHHHHHHhc-ccccccc----ccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecH
Confidence 6544331111 1111111 111222339999999999999999999999999999999885 446999999999
Q ss_pred hhHHHHHHHcCCceeccceeeeEEEee
Q 023798 157 DDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (277)
Q Consensus 157 ~~a~~a~~~l~g~~~~g~~~~~~i~~~ 183 (277)
++|++|+.+|||.++.|...++-+..+
T Consensus 331 ~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 331 EDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred HHHHHHHHHhccceecCceEEEEEeee
Confidence 999999999999999997766544433
No 39
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1.7e-19 Score=140.02 Aligned_cols=130 Identities=25% Similarity=0.399 Sum_probs=109.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 1 MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 1 ~~~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
|.+...+||||+||...+||+-|..||.++|.|+.++|+.+ .|+|.|+
T Consensus 1 ~~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~--------------------------------e~~v~wa 48 (321)
T KOG0148|consen 1 NGSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--------------------------------ELKVNWA 48 (321)
T ss_pred CCCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh--------------------------------hhccccc
Confidence 45678899999999999999999999999999999998743 4566666
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcCh
Q 023798 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNY 156 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~ 156 (277)
.....++. +.......+||+.|..+++-+.|++.|.+||+|..+.|++|.. +||+||.|.+.
T Consensus 49 ~~p~nQsk--------------~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k 114 (321)
T KOG0148|consen 49 TAPGNQSK--------------PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNK 114 (321)
T ss_pred cCcccCCC--------------CccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccch
Confidence 54322211 2222357899999999999999999999999999999999954 46999999999
Q ss_pred hhHHHHHHHcCCceecccee
Q 023798 157 DDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 157 ~~a~~a~~~l~g~~~~g~~~ 176 (277)
++|+.|+.+|+|..|+++.+
T Consensus 115 ~dAEnAI~~MnGqWlG~R~I 134 (321)
T KOG0148|consen 115 EDAENAIQQMNGQWLGRRTI 134 (321)
T ss_pred HHHHHHHHHhCCeeecccee
Confidence 99999999999999998443
No 40
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.81 E-value=1.9e-19 Score=147.34 Aligned_cols=164 Identities=20% Similarity=0.350 Sum_probs=136.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEE
Q 023798 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (277)
Q Consensus 2 ~~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 78 (277)
.....++||||+|+++++++.|++.|.+||+|.++.++. ++.++||+||+|.+++.+.++|. ...+.|+|+.|.+.
T Consensus 2 ~~~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k 80 (311)
T KOG4205|consen 2 ESGESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPK 80 (311)
T ss_pred CccCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccce
Confidence 345789999999999999999999999999999999965 57889999999999999999988 66788999999988
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC----CEEEEEEc
Q 023798 79 LAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYT 154 (277)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~afv~f~ 154 (277)
-|.....+...... ....+|||++||..++++++++.|.+||.|..+.++.+... +|+||.|.
T Consensus 81 ~av~r~~~~~~~~~-------------~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~ 147 (311)
T KOG4205|consen 81 RAVSREDQTKVGRH-------------LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFD 147 (311)
T ss_pred eccCcccccccccc-------------cceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEec
Confidence 88765543322111 14569999999999999999999999999999999888543 59999999
Q ss_pred ChhhHHHHHHHcCCceeccceeeeEE
Q 023798 155 NYDDMKHAIKKLDDSEFRNAFSRAYV 180 (277)
Q Consensus 155 ~~~~a~~a~~~l~g~~~~g~~~~~~i 180 (277)
+.+.+.+++. ..-..++++.+.+..
T Consensus 148 ~e~sVdkv~~-~~f~~~~gk~vevkr 172 (311)
T KOG4205|consen 148 SEDSVDKVTL-QKFHDFNGKKVEVKR 172 (311)
T ss_pred cccccceecc-cceeeecCceeeEee
Confidence 9999888887 667777775544443
No 41
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.80 E-value=9.8e-19 Score=129.45 Aligned_cols=81 Identities=26% Similarity=0.525 Sum_probs=75.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
.+++|||+|||+.+++++|+++|.+||.|..|.|+. +++++|||||+|.+.++|+.||..||+..|.|+.|.|.++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 578999999999999999999999999999999954 56889999999999999999999999999999999999997
Q ss_pred CCCC
Q 023798 82 GGRG 85 (277)
Q Consensus 82 ~~~~ 85 (277)
....
T Consensus 113 ~~~~ 116 (144)
T PLN03134 113 DRPS 116 (144)
T ss_pred cCCC
Confidence 5543
No 42
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.80 E-value=6.2e-19 Score=149.53 Aligned_cols=175 Identities=22% Similarity=0.351 Sum_probs=130.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccC
Q 023798 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (277)
Q Consensus 6 ~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~ 82 (277)
-..||||||..++++++|+.+|++||.|..|.+.. +|.++|||||+|.+.++|.+|+..|||..|.|+.|+|.....
T Consensus 278 ~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 278 MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 33489999999999999999999999999999954 689999999999999999999999999999999999977653
Q ss_pred CCCCCCCC-CC---------C-CCCCCC------------------------------------------CCCCCC----
Q 023798 83 GRGRSSSD-RH---------S-SHSSGR------------------------------------------GRGVSR---- 105 (277)
Q Consensus 83 ~~~~~~~~-~~---------~-~~~~~~------------------------------------------~~~~~~---- 105 (277)
........ .. . .....+ ....+.
T Consensus 358 r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p 437 (549)
T KOG0147|consen 358 RVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASP 437 (549)
T ss_pred ecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCcccccc
Confidence 33222110 00 0 000000 000011
Q ss_pred ---CccceEEccCCCC--CCC--------HHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceec
Q 023798 106 ---RSEYRVLVTGLPS--SAS--------WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (277)
Q Consensus 106 ---~~~~~l~v~~l~~--~~~--------~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~ 172 (277)
.+..++.+.|+-. +.| .+++.+.+.+||+|+.|.+-++.. |+.||.|.+.+.|..|+..|||.++.
T Consensus 438 ~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~-g~VYvrc~s~~~A~~a~~alhgrWF~ 516 (549)
T KOG0147|consen 438 AFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSA-GCVYVRCPSAEAAGTAVKALHGRWFA 516 (549)
T ss_pred ccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCC-ceEEEecCcHHHHHHHHHHHhhhhhc
Confidence 1223344444311 111 467888999999999999877765 79999999999999999999999999
Q ss_pred cceeeeEEE
Q 023798 173 NAFSRAYVR 181 (277)
Q Consensus 173 g~~~~~~i~ 181 (277)
|+.++..+.
T Consensus 517 gr~Ita~~~ 525 (549)
T KOG0147|consen 517 GRMITAKYL 525 (549)
T ss_pred cceeEEEEe
Confidence 988876543
No 43
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=4.2e-18 Score=134.17 Aligned_cols=84 Identities=36% Similarity=0.630 Sum_probs=77.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEee---cCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEE
Q 023798 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (277)
Q Consensus 2 ~~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~---~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 78 (277)
.++|=+||||+-|+++++|..|+..|+.||+|+.|.|+ .+++++|||||+|.++.+...|+...+|.+|+|+.|.|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 45788999999999999999999999999999999994 478999999999999999999999999999999999999
Q ss_pred EccCCCC
Q 023798 79 LAHGGRG 85 (277)
Q Consensus 79 ~a~~~~~ 85 (277)
+......
T Consensus 177 vERgRTv 183 (335)
T KOG0113|consen 177 VERGRTV 183 (335)
T ss_pred ecccccc
Confidence 9765443
No 44
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.78 E-value=7.4e-18 Score=126.05 Aligned_cols=74 Identities=18% Similarity=0.153 Sum_probs=67.2
Q ss_pred CCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 103 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
+.....+.|.|.||.+.++.++|..+|++||.|-+|.|+.+.. .+||||.|....+|++|++.|+|..++|+.+
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRel 85 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGREL 85 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeecccee
Confidence 4555678999999999999999999999999999999998854 4699999999999999999999999999543
No 45
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.77 E-value=4.6e-17 Score=130.81 Aligned_cols=179 Identities=21% Similarity=0.264 Sum_probs=139.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeE--------EEe--ecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCce
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAH--------IDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~--------v~~--~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~ 74 (277)
-++.|||.|||.++|.+++.++|++||.|.. |+| ...|+.+|-|+|.|...+++..|+..|++..|.|+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 4677999999999999999999999997643 444 335889999999999999999999999999999999
Q ss_pred EEEEEccCCCCCCCCCCCCC----------------C---CCCCCCCCCCCccceEEccCCCC----CCC-------HHH
Q 023798 75 LRVELAHGGRGRSSSDRHSS----------------H---SSGRGRGVSRRSEYRVLVTGLPS----SAS-------WQD 124 (277)
Q Consensus 75 l~v~~a~~~~~~~~~~~~~~----------------~---~~~~~~~~~~~~~~~l~v~~l~~----~~~-------~~~ 124 (277)
|.|+.|+......-...... . .+....+.......+|.+.|+-. ..+ +++
T Consensus 213 ~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlked 292 (382)
T KOG1548|consen 213 LRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKED 292 (382)
T ss_pred EEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHH
Confidence 99999985443221111000 0 00011122234567888888632 122 567
Q ss_pred HHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccceeeeEEEee
Q 023798 125 LKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (277)
Q Consensus 125 l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 183 (277)
|.+.+.+||.|..|.|....+.|.+.|.|.+.++|..+++.|+|..++|+.+.+.|-..
T Consensus 293 l~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 293 LTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred HHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 88889999999999999999999999999999999999999999999998887776543
No 46
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=1.1e-18 Score=120.62 Aligned_cols=80 Identities=38% Similarity=0.572 Sum_probs=74.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEe---ecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~---~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
+.++|||||||+..++|++|.+||+.||+|..|.| ..+..+.|||||+|...++|..|+..+||..++.++|.+.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 47899999999999999999999999999999998 345678999999999999999999999999999999999997
Q ss_pred cCC
Q 023798 81 HGG 83 (277)
Q Consensus 81 ~~~ 83 (277)
.+-
T Consensus 114 ~GF 116 (153)
T KOG0121|consen 114 AGF 116 (153)
T ss_pred ccc
Confidence 643
No 47
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.73 E-value=6.2e-17 Score=141.17 Aligned_cols=176 Identities=20% Similarity=0.281 Sum_probs=137.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~ 83 (277)
+..+.|+|+|||..+..++|..+|..||+|..|.|+..| --++|+|.++.+|.+|+..|....+...++.+.|+...
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G---~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~d 459 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGG---TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPED 459 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCccc---ceeeeeecCccchHHHHHHhchhhhccCccccccChhh
Confidence 456899999999999999999999999999999665222 25999999999999999999999999999999998754
Q ss_pred CCC--CCCCC------CC------CC--CCCC----CCC-----------CCCCccceEEccCCCCCCCHHHHHHHHhhc
Q 023798 84 RGR--SSSDR------HS------SH--SSGR----GRG-----------VSRRSEYRVLVTGLPSSASWQDLKDHMRRA 132 (277)
Q Consensus 84 ~~~--~~~~~------~~------~~--~~~~----~~~-----------~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~ 132 (277)
... +.... .. .. ...+ ... ......++|||.||++.++.+.|..+|..+
T Consensus 460 vf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~ 539 (725)
T KOG0110|consen 460 VFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQ 539 (725)
T ss_pred hccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhc
Confidence 433 11000 00 00 0000 000 011133449999999999999999999999
Q ss_pred CceeEEEEEecCCC-------CEEEEEEcChhhHHHHHHHcCCceeccceeeeEEEe
Q 023798 133 GDVCFSQVFRDGSG-------TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (277)
Q Consensus 133 g~i~~~~~~~~~~~-------~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 182 (277)
|.|..+.|..-+.. |||||+|.+.++|+.|+..|+|..++|+.+-..+..
T Consensus 540 G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 540 GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred CeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 99999988766544 799999999999999999999999999876555544
No 48
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.71 E-value=7.9e-17 Score=127.41 Aligned_cols=79 Identities=22% Similarity=0.323 Sum_probs=73.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCCCC
Q 023798 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRG 85 (277)
Q Consensus 6 ~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~~~ 85 (277)
.++|||+|||+.+|+++|+++|+.||+|..|.|..++..+|||||+|.++++|..||. |||..|.|+.|.|.++.....
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~~~ 82 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDYQL 82 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCCCC
Confidence 5899999999999999999999999999999998877778999999999999999996 999999999999999875443
No 49
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.71 E-value=4.2e-16 Score=127.84 Aligned_cols=167 Identities=16% Similarity=0.243 Sum_probs=136.9
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCCC
Q 023798 6 SRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (277)
Q Consensus 6 ~~~l~v~nL~~-~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~~ 84 (277)
+++|.|.||.. .+|.+.|..+|+-||.|..|+|...+ +..|+|+|.+...|+.|++.|+|..|.|++|.|.+++...
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk--kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK--KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC--CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 68999999965 59999999999999999999996544 3689999999999999999999999999999999999776
Q ss_pred CCCCCCCCCCCCCC----------------CCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCE
Q 023798 85 GRSSSDRHSSHSSG----------------RGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTT 148 (277)
Q Consensus 85 ~~~~~~~~~~~~~~----------------~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~ 148 (277)
-+.+.+.....+-. ......-++..++++.|+|..+++++|++.|...|-......+..++..+
T Consensus 375 vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~km 454 (492)
T KOG1190|consen 375 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKM 454 (492)
T ss_pred ccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcce
Confidence 55444322211100 11112235677999999999999999999999999877766666666679
Q ss_pred EEEEEcChhhHHHHHHHcCCceeccc
Q 023798 149 GIVDYTNYDDMKHAIKKLDDSEFRNA 174 (277)
Q Consensus 149 afv~f~~~~~a~~a~~~l~g~~~~g~ 174 (277)
|++.+++.++|..|+-.++...+++.
T Consensus 455 al~q~~sveeA~~ali~~hnh~lgen 480 (492)
T KOG1190|consen 455 ALPQLESVEEAIQALIDLHNHYLGEN 480 (492)
T ss_pred eecccCChhHhhhhccccccccCCCC
Confidence 99999999999999999999988764
No 50
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.70 E-value=3.4e-17 Score=106.74 Aligned_cols=68 Identities=44% Similarity=0.826 Sum_probs=63.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCceeEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEE
Q 023798 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (277)
Q Consensus 9 l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~ 76 (277)
|||+|||+++|+++|+++|+.||.|..+.+.. .+..+++|||+|.+.++|+.|+..|||..|.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999999955 477889999999999999999999999999999875
No 51
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.70 E-value=1.1e-16 Score=141.91 Aligned_cols=127 Identities=21% Similarity=0.286 Sum_probs=99.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcc--CceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccC
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKY--GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~--G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~ 82 (277)
..++|||+||+.++++++|+++|+.| |+|..|.+. ++||||+|.+.++|++|+..||+..|.|+.|.|.|+.+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKP 306 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 45789999999999999999999999 999999876 67999999999999999999999999999999999976
Q ss_pred CCCCCCCCCCCCCCCC---------CCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCcee
Q 023798 83 GRGRSSSDRHSSHSSG---------RGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVC 136 (277)
Q Consensus 83 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~ 136 (277)
..............+. .....-.....++++.|+++.++++.+.++|..+|.+.
T Consensus 307 ~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~ 369 (578)
T TIGR01648 307 VDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIR 369 (578)
T ss_pred CCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccccCcccc
Confidence 4432110000000000 00111223567899999999999999999999988754
No 52
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.70 E-value=1e-15 Score=126.63 Aligned_cols=169 Identities=22% Similarity=0.339 Sum_probs=131.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHh-ccCceeEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFY-KYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~-~~G~v~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
-.+.+||+|||+++.+++|++||. +.|+|.+|.+.. .++++|||.|||+++|.+++|++.||...+.|++|.|+-..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 346799999999999999999998 789999999965 58999999999999999999999999999999999997655
Q ss_pred CCCCCC---------------------CCCCCCCCCCC------------------------------------------
Q 023798 82 GGRGRS---------------------SSDRHSSHSSG------------------------------------------ 98 (277)
Q Consensus 82 ~~~~~~---------------------~~~~~~~~~~~------------------------------------------ 98 (277)
...... ...........
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 311000 00000000000
Q ss_pred ---CCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC---CCEEEEEEcChhhHHHHHHHcCCceec
Q 023798 99 ---RGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (277)
Q Consensus 99 ---~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~ 172 (277)
.......+-..++||.||.+.+....|.+.|.-.|+|..+.+-.++. +++|.++|.++-+|-+|+..+++.-+.
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~ 282 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLF 282 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCc
Confidence 00011223456899999999999999999999999999998877753 469999999999999999999975544
Q ss_pred c
Q 023798 173 N 173 (277)
Q Consensus 173 g 173 (277)
.
T Consensus 283 ~ 283 (608)
T KOG4212|consen 283 D 283 (608)
T ss_pred c
Confidence 4
No 53
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.69 E-value=1.3e-15 Score=127.97 Aligned_cols=158 Identities=22% Similarity=0.290 Sum_probs=121.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec-CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~ 83 (277)
....|-+.+||+++|++||.++|+.|+ |..+.+.. +++..|-|||+|.+++++++|++ ++-..+..+.|.|..+...
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCc
Confidence 345688899999999999999999997 77787766 48999999999999999999999 7888888999999877544
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeE-EEEEec---CCCCEEEEEEcChhhH
Q 023798 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRD---GSGTTGIVDYTNYDDM 159 (277)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~-~~~~~~---~~~~~afv~f~~~~~a 159 (277)
...-. ... .+. ........|-+.+||+.|++++|.++|+----+.. +.++.+ +.++-|||.|++.+.|
T Consensus 87 e~d~~---~~~---~g~--~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~a 158 (510)
T KOG4211|consen 87 EADWV---MRP---GGP--NSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESA 158 (510)
T ss_pred ccccc---ccC---CCC--CCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHH
Confidence 32110 000 000 11135568999999999999999999997654444 434444 4456899999999999
Q ss_pred HHHHHHcCCceecc
Q 023798 160 KHAIKKLDDSEFRN 173 (277)
Q Consensus 160 ~~a~~~l~g~~~~g 173 (277)
++|+. -|...|+.
T Consensus 159 e~Al~-rhre~iGh 171 (510)
T KOG4211|consen 159 EIALG-RHRENIGH 171 (510)
T ss_pred HHHHH-HHHHhhcc
Confidence 99998 45555555
No 54
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=4.9e-16 Score=133.56 Aligned_cols=172 Identities=20% Similarity=0.343 Sum_probs=129.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
..+.+||++||..++++++.+++..||+++...+.. ++.++||||.+|.++..+..|+..|||+.++++.|.|+.|.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 457899999999999999999999999999998844 46899999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCC--C-CCCCCCCC--CCCCCccceEEccCC--CCCC-C-------HHHHHHHHhhcCceeEEEEEec-C-
Q 023798 82 GGRGRSSSDRH--S-SHSSGRGR--GVSRRSEYRVLVTGL--PSSA-S-------WQDLKDHMRRAGDVCFSQVFRD-G- 144 (277)
Q Consensus 82 ~~~~~~~~~~~--~-~~~~~~~~--~~~~~~~~~l~v~~l--~~~~-~-------~~~l~~~f~~~g~i~~~~~~~~-~- 144 (277)
..........+ . ...+.... .....+...|.+.|+ |.++ . .++++..+.+||.|..|.+..+ .
T Consensus 368 ~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~ 447 (500)
T KOG0120|consen 368 VGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPD 447 (500)
T ss_pred ccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCC
Confidence 76655444333 1 01111000 111122223333332 1111 1 2466778889999999999877 2
Q ss_pred -----CCCEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 145 -----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 145 -----~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
..|..||+|.+.+++++|++.|+|.+++|+.+
T Consensus 448 ~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtV 484 (500)
T KOG0120|consen 448 ENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTV 484 (500)
T ss_pred CCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEE
Confidence 23589999999999999999999999999765
No 55
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.67 E-value=2.1e-15 Score=117.39 Aligned_cols=79 Identities=24% Similarity=0.282 Sum_probs=73.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCCC
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~~ 84 (277)
...+|||+||++.+|+++|+++|+.||+|.+|.|..++...+||||+|.++++|..|+. |||..|.+++|.|..+....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~y~ 82 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQYE 82 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcccc
Confidence 45899999999999999999999999999999998888888999999999999999997 99999999999999876544
No 56
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=6.4e-16 Score=102.90 Aligned_cols=79 Identities=37% Similarity=0.515 Sum_probs=73.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~ 83 (277)
-+..|||.|||+++|.+++.+||+.||.|.+|.|=.+...+|.|||.|++..+|.+|+..|+|..+.++.|.|-+..+.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 4678999999999999999999999999999999777788999999999999999999999999999999999887643
No 57
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=6.1e-16 Score=118.83 Aligned_cols=79 Identities=41% Similarity=0.649 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEe---ecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~---~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
+++++|-|.||+.++++++|++||.+||.|..|.| ..+|.++|||||.|.+.++|++||..|||.-++.-.|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 47899999999999999999999999999999999 347899999999999999999999999999999999999999
Q ss_pred cC
Q 023798 81 HG 82 (277)
Q Consensus 81 ~~ 82 (277)
++
T Consensus 267 kP 268 (270)
T KOG0122|consen 267 KP 268 (270)
T ss_pred CC
Confidence 75
No 58
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.65 E-value=3.8e-15 Score=123.65 Aligned_cols=140 Identities=30% Similarity=0.518 Sum_probs=110.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccC
Q 023798 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (277)
Q Consensus 6 ~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~ 82 (277)
.++|||+|||+.+++++|.++|..||.|..+.+.. ++.++|||||+|.++++|..|+..++|..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 59999999999999999999999999999998854 478999999999999999999999999999999999999753
Q ss_pred --CCCCCCCC---CCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC
Q 023798 83 --GRGRSSSD---RHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS 145 (277)
Q Consensus 83 --~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~ 145 (277)
........ ....................+++.+++..++..++...|..+|.+..+.+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKD 262 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCC
Confidence 11111110 0000001112223445678899999999999999999999999997766655543
No 59
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.62 E-value=4.2e-15 Score=125.46 Aligned_cols=82 Identities=32% Similarity=0.520 Sum_probs=73.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCC--ceEEEEE
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVEL 79 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g--~~l~v~~ 79 (277)
.+++|||+|||+.+|+++|+++|++||+|..|.|+. ++.+++||||+|.+.++|++||..||+..|.+ ++|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 467899999999999999999999999999999854 56788999999999999999999999999876 6899999
Q ss_pred ccCCCCC
Q 023798 80 AHGGRGR 86 (277)
Q Consensus 80 a~~~~~~ 86 (277)
+......
T Consensus 272 a~~~~~~ 278 (346)
T TIGR01659 272 AEEHGKA 278 (346)
T ss_pred CCccccc
Confidence 8865443
No 60
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.62 E-value=1.4e-15 Score=99.09 Aligned_cols=68 Identities=34% Similarity=0.727 Sum_probs=60.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCceeEEEeecC--CCCCceEEEEEcChHHHHHHHHhcCCCccCCceEE
Q 023798 9 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (277)
Q Consensus 9 l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~--~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~ 76 (277)
|||+|||+.+++++|.++|+.||.|..+.+... +..+++|||+|.++++|..|+..+++..|.|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999543 56789999999999999999999999999999874
No 61
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=7.4e-17 Score=118.36 Aligned_cols=84 Identities=26% Similarity=0.503 Sum_probs=77.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.++.-|||||||+.+||.||...|++||+|++|.++. ||.++||||+.|+++.+...|+..|||..|.|+.|.|.+.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 3677899999999999999999999999999999954 7899999999999999999999999999999999999998
Q ss_pred cCCCCCC
Q 023798 81 HGGRGRS 87 (277)
Q Consensus 81 ~~~~~~~ 87 (277)
.....+.
T Consensus 113 ~~Yk~pk 119 (219)
T KOG0126|consen 113 SNYKKPK 119 (219)
T ss_pred ccccCCc
Confidence 7666543
No 62
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=3.2e-14 Score=112.48 Aligned_cols=72 Identities=21% Similarity=0.236 Sum_probs=65.7
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecC----CCCEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
..+-.+|||.-|++++++..|+..|..||.|+.|.++.+. ..|||||+|++..+...|.+..+|.+|+|+.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri 173 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRI 173 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEE
Confidence 3566899999999999999999999999999999999884 45699999999999999999999999999543
No 63
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=3.5e-15 Score=104.21 Aligned_cols=78 Identities=27% Similarity=0.502 Sum_probs=72.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023798 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~ 83 (277)
-.|||+++...+|+++|.+.|..||+|+.|.|+. ++-.+|||+|+|.+.++|++|+..|||..|.|+.|.|.||-..
T Consensus 73 wIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 73 WIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred EEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEec
Confidence 4689999999999999999999999999999954 6888999999999999999999999999999999999999644
Q ss_pred C
Q 023798 84 R 84 (277)
Q Consensus 84 ~ 84 (277)
.
T Consensus 153 g 153 (170)
T KOG0130|consen 153 G 153 (170)
T ss_pred C
Confidence 3
No 64
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=1.3e-13 Score=111.88 Aligned_cols=76 Identities=25% Similarity=0.502 Sum_probs=69.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 6 ~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
=+.|||..+.++++++||+..|+-||+|..|.+.. ....+||+||+|.+..+...|+..||=+.++|+.|.|.-+.
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 36899999999999999999999999999999944 35679999999999999999999999999999999997765
No 65
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=9.7e-15 Score=116.77 Aligned_cols=81 Identities=23% Similarity=0.459 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec-CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccC
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~ 82 (277)
...+.|+|.|||...-+.||+..|++||.|.+|.|+. +-.+||||||+|+++++|++|-.+|||..+.|++|.|..+..
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 4678999999999999999999999999999999965 567899999999999999999999999999999999999875
Q ss_pred CC
Q 023798 83 GR 84 (277)
Q Consensus 83 ~~ 84 (277)
..
T Consensus 174 rV 175 (376)
T KOG0125|consen 174 RV 175 (376)
T ss_pred hh
Confidence 53
No 66
>PLN03213 repressor of silencing 3; Provisional
Probab=99.58 E-value=9.7e-15 Score=122.73 Aligned_cols=77 Identities=19% Similarity=0.396 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcCh--HHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEA--RDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~--~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
.....||||||++.+++++|..+|..||.|..|.|+.... +|||||+|... .++.+||..|||..|.|+.|+|+.|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG-RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG-RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC-CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 3567899999999999999999999999999999976433 99999999987 68999999999999999999999987
No 67
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.57 E-value=1.5e-13 Score=101.84 Aligned_cols=72 Identities=22% Similarity=0.338 Sum_probs=65.1
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
....++|||+|||+.+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|+.|++.|++..++|+.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l 106 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHI 106 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34567999999999999999999999999999999998753 4699999999999999999999999999543
No 68
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=2.2e-14 Score=109.92 Aligned_cols=76 Identities=26% Similarity=0.451 Sum_probs=69.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCceeEEEee---cCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023798 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~---~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~ 83 (277)
++||||+|++.+..+.|+.+|++||+|.+..++ .+++++|||||+|.+.++|..|+. -.+-.|+|+...|.+|...
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcnlA~lg 91 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCNLASLG 91 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccchhhhc
Confidence 689999999999999999999999999998884 468999999999999999999999 4467899999999998763
No 69
>smart00362 RRM_2 RNA recognition motif.
Probab=99.57 E-value=2.4e-14 Score=93.28 Aligned_cols=70 Identities=46% Similarity=0.848 Sum_probs=64.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCceeEEEeecC-CCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEE
Q 023798 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (277)
Q Consensus 8 ~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~-~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 77 (277)
+|||+|||..+++++|+++|..||+|..+.+..+ +.+.++|||+|.+.++|+.|+..+++..+.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 5899999999999999999999999999988653 566799999999999999999999999999998876
No 70
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.56 E-value=3.2e-14 Score=116.96 Aligned_cols=178 Identities=17% Similarity=0.218 Sum_probs=132.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCC--CccCCceEEEEEc
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG--YDFDGHRLRVELA 80 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g--~~~~g~~l~v~~a 80 (277)
..+++.|.++|||++++|++|.+++.+||.|..+.+.. .+..|||+|.+.++|...+..... -.+.|++|.|+|+
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lk---GknQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~s 101 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLK---GKNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYS 101 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeeec---cchhhhhhhcchhhhhheeecccccCccccCcceeehhh
Confidence 34899999999999999999999999999999998863 345899999999988875443332 2356888888887
Q ss_pred cCCCCCCCCCCC------------------CCCCC---CCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEE
Q 023798 81 HGGRGRSSSDRH------------------SSHSS---GRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQ 139 (277)
Q Consensus 81 ~~~~~~~~~~~~------------------~~~~~---~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~ 139 (277)
....-....... ..... ..+.......-..++|+++-+.++.+.|-++|++||.|..|.
T Consensus 102 n~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIi 181 (492)
T KOG1190|consen 102 NHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKII 181 (492)
T ss_pred hHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEE
Confidence 632211111000 00000 000112222345778899999999999999999999999988
Q ss_pred EEecCCCCEEEEEEcChhhHHHHHHHcCCceeccceeeeEEEee
Q 023798 140 VFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (277)
Q Consensus 140 ~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 183 (277)
-+...++.-|.|+|.+...|+.|...|+|..|.+..++.+|...
T Consensus 182 TF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~S 225 (492)
T KOG1190|consen 182 TFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFS 225 (492)
T ss_pred EEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehh
Confidence 88877777899999999999999999999998876666666544
No 71
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.54 E-value=4.4e-13 Score=111.23 Aligned_cols=76 Identities=21% Similarity=0.381 Sum_probs=65.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEe--ecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEE
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~--~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 79 (277)
....++||.||.+.+....|++.|.--|.|+.|.+ .+.+.++|+|.++|..+-.|.+||..|++.-+..++..+.+
T Consensus 213 Pl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 213 PLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred CccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCccccceeec
Confidence 34578999999999999999999999999999888 44678899999999999999999999997776666666555
No 72
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.52 E-value=7.1e-13 Score=107.95 Aligned_cols=171 Identities=18% Similarity=0.222 Sum_probs=134.2
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccC
Q 023798 4 RASRTLYVGNLPGD-IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (277)
Q Consensus 4 ~~~~~l~v~nL~~~-~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~ 82 (277)
-+.+.++|.+|... ++.+.|.++|..||.|..|+++++. .|.|+|++.+....+.|+..||+..+.|.+|.|.+++.
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk--~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK--PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc--cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 36789999999775 8889999999999999999998765 57899999999999999999999999999999999875
Q ss_pred CCCCCCC-----CC-----------CCCCCCC--CCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCc-eeEEEEEec
Q 023798 83 GRGRSSS-----DR-----------HSSHSSG--RGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRD 143 (277)
Q Consensus 83 ~~~~~~~-----~~-----------~~~~~~~--~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~-i~~~~~~~~ 143 (277)
....... +. ...+... ........+.+.|..-|.|..+||+.|.++|...+. ...++++..
T Consensus 363 ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~ 442 (494)
T KOG1456|consen 363 NFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPL 442 (494)
T ss_pred cccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeecc
Confidence 4432210 00 0000000 111233457889999999999999999999998773 455666655
Q ss_pred CC--CCEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 144 GS--GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 144 ~~--~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
+. ...+.++|++..+|.+|+..+|...+.+...
T Consensus 443 kserSssGllEfe~~s~Aveal~~~NH~pi~~p~g 477 (494)
T KOG1456|consen 443 KSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNG 477 (494)
T ss_pred cccccccceeeeehHHHHHHHHHHhccccccCCCC
Confidence 43 2378999999999999999999999988543
No 73
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.8e-14 Score=115.28 Aligned_cols=80 Identities=24% Similarity=0.396 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.|.++|||..|.+-+|.++|..+|+.||.|..|.++. ++.+..||||+|.+.+++++|+-.|++..|+++.|+|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 4889999999999999999999999999999999954 7889999999999999999999999999999999999998
Q ss_pred cCC
Q 023798 81 HGG 83 (277)
Q Consensus 81 ~~~ 83 (277)
..-
T Consensus 317 QSV 319 (479)
T KOG0415|consen 317 QSV 319 (479)
T ss_pred hhh
Confidence 643
No 74
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.50 E-value=4.6e-12 Score=103.27 Aligned_cols=173 Identities=18% Similarity=0.168 Sum_probs=130.3
Q ss_pred CCCCCeEEEcCCCC--CCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccC--CceEEEE
Q 023798 3 SRASRTLYVGNLPG--DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD--GHRLRVE 78 (277)
Q Consensus 3 ~~~~~~l~v~nL~~--~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~--g~~l~v~ 78 (277)
..++..|.++=|.+ .+|.+-|.++...+|+|..|.|..- +--.|+|||.+.+.|++|.+.|||..|. -+.|+|+
T Consensus 117 ~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIe 194 (494)
T KOG1456|consen 117 ATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIE 194 (494)
T ss_pred CCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cceeeEEeechhHHHHHHHhhcccccccccceeEEEE
Confidence 34677777775544 5999999999999999999988532 2347999999999999999999999874 5689999
Q ss_pred EccCCCCCC-----------------------C-----------CCCCCCCCC-------C---CC--------------
Q 023798 79 LAHGGRGRS-----------------------S-----------SDRHSSHSS-------G---RG-------------- 100 (277)
Q Consensus 79 ~a~~~~~~~-----------------------~-----------~~~~~~~~~-------~---~~-------------- 100 (277)
||++.+-.- . ...+..+.+ + ++
T Consensus 195 yAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~ 274 (494)
T KOG1456|consen 195 YAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRD 274 (494)
T ss_pred ecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCcccccc
Confidence 998432100 0 000000000 0 00
Q ss_pred -----CCCCCCccceEEccCCCCC-CCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccc
Q 023798 101 -----RGVSRRSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (277)
Q Consensus 101 -----~~~~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~ 174 (277)
.+....+++.+.|.+|... ++-+.|..+|+.||.|..|.+++.+.+ .|.|++.+..+.+.|+..||+..+.|.
T Consensus 275 ~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~g-tamVemgd~~aver~v~hLnn~~lfG~ 353 (494)
T KOG1456|consen 275 GRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPG-TAMVEMGDAYAVERAVTHLNNIPLFGG 353 (494)
T ss_pred CCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccc-eeEEEcCcHHHHHHHHHHhccCccccc
Confidence 0012246788999999865 588999999999999999999998654 799999999999999999999999886
Q ss_pred eeee
Q 023798 175 FSRA 178 (277)
Q Consensus 175 ~~~~ 178 (277)
.+..
T Consensus 354 kl~v 357 (494)
T KOG1456|consen 354 KLNV 357 (494)
T ss_pred eEEE
Confidence 5433
No 75
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=3e-14 Score=107.84 Aligned_cols=84 Identities=35% Similarity=0.616 Sum_probs=77.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
...++||||+|...+++.-|...|-+||.|.+|.++. +.+.+|||||+|...|+|.+||..||+.+|.|+.|.|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 3568999999999999999999999999999999965 4678999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 023798 81 HGGRGRS 87 (277)
Q Consensus 81 ~~~~~~~ 87 (277)
.+.+...
T Consensus 88 kP~kike 94 (298)
T KOG0111|consen 88 KPEKIKE 94 (298)
T ss_pred CCccccC
Confidence 8766543
No 76
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.49 E-value=2.8e-13 Score=88.68 Aligned_cols=72 Identities=42% Similarity=0.815 Sum_probs=65.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCC--CCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEE
Q 023798 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP--RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (277)
Q Consensus 8 ~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~--~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 79 (277)
+|+|+|||+.+++++|.++|..||.|..+.+..+. .+.++|||+|.+.++|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999999996543 4588999999999999999999999999999998864
No 77
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.48 E-value=2.1e-13 Score=84.46 Aligned_cols=56 Identities=38% Similarity=0.661 Sum_probs=50.9
Q ss_pred HHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 23 VEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 23 L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
|.++|++||+|..+.+.... .++|||+|.+.++|..|+..|||..|.|++|.|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999996544 589999999999999999999999999999999986
No 78
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.48 E-value=3e-13 Score=87.88 Aligned_cols=66 Identities=20% Similarity=0.383 Sum_probs=60.2
Q ss_pred EEccCCCCCCCHHHHHHHHhhcCceeEEEEEecC---CCCEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 111 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 111 l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~---~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
|||+|||+.+++++|.++|.+||.|..+.+..+. ..++|||+|.+.++|+.|++.|+|..++|+.+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~i 69 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKI 69 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCc
Confidence 7999999999999999999999999999999862 23599999999999999999999999999543
No 79
>smart00360 RRM RNA recognition motif.
Probab=99.47 E-value=2.5e-13 Score=88.08 Aligned_cols=67 Identities=45% Similarity=0.804 Sum_probs=61.8
Q ss_pred EcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEE
Q 023798 11 VGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (277)
Q Consensus 11 v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 77 (277)
|+|||..+++++|+++|..||.|..+.+.. ++.++++|||+|.+.++|..|+..|++..+.|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 689999999999999999999999999854 3567899999999999999999999999999999887
No 80
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.45 E-value=3.8e-13 Score=115.30 Aligned_cols=79 Identities=33% Similarity=0.665 Sum_probs=74.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023798 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~ 83 (277)
++|||||||+++++++|.++|+..|.|..+++.. +|.++||||++|.+.++|..|+..|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999999954 6899999999999999999999999999999999999999855
Q ss_pred CC
Q 023798 84 RG 85 (277)
Q Consensus 84 ~~ 85 (277)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 81
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=6.8e-13 Score=110.43 Aligned_cols=77 Identities=31% Similarity=0.557 Sum_probs=71.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCCCC
Q 023798 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRG 85 (277)
Q Consensus 6 ~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~~~ 85 (277)
-+.|||.||+.++|++.|+++|+.||.|..|+.+ +.||||.|.+-++|.+||..+||..|.|..|.|.+|++...
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~-----rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP-----RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDK 333 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecc-----cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhh
Confidence 3689999999999999999999999999999887 55999999999999999999999999999999999997665
Q ss_pred CC
Q 023798 86 RS 87 (277)
Q Consensus 86 ~~ 87 (277)
..
T Consensus 334 ~k 335 (506)
T KOG0117|consen 334 KK 335 (506)
T ss_pred hc
Confidence 43
No 82
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.39 E-value=5.1e-13 Score=105.37 Aligned_cols=75 Identities=41% Similarity=0.716 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~ 83 (277)
.++++|+||||.+.++.++|++.|++||+|..+.|. ++|+||.|.-.++|..|+..|||.+|.|++++|+++...
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-----kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeee-----cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 478999999999999999999999999999999998 789999999999999999999999999999999998643
No 83
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=2.2e-11 Score=103.55 Aligned_cols=166 Identities=21% Similarity=0.303 Sum_probs=113.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecC-----CCCCc---eEEEEEcChHHHHHHHHhcCCCccCCceEE
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-----PRPPG---YAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~-----~~~~g---~afV~f~~~~~A~~a~~~l~g~~~~g~~l~ 76 (277)
=+++||||+||++++|++|...|..||.+..-.-.+. -.++| |+|+.|+++.+++..+.++.- ....+.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~~y 334 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGNYY 334 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccceE
Confidence 4689999999999999999999999998642211110 13456 999999999999887775432 333333
Q ss_pred EEEccCCCCCCCCCCCCCCCCC----CCCCCCCCccceEEccCCCCCCCHHHHHHHHh-hcCceeEEEEEecC----CCC
Q 023798 77 VELAHGGRGRSSSDRHSSHSSG----RGRGVSRRSEYRVLVTGLPSSASWQDLKDHMR-RAGDVCFSQVFRDG----SGT 147 (277)
Q Consensus 77 v~~a~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~-~~g~i~~~~~~~~~----~~~ 147 (277)
+..+....+.....-.+..... ......-.+..+|||++||-.++.++|..+|. -||.|+.+-|-.|+ ++|
T Consensus 335 f~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkG 414 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKG 414 (520)
T ss_pred EEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCC
Confidence 3333322222210000000000 01123344668999999999999999999998 89999999998884 446
Q ss_pred EEEEEEcChhhHHHHHHH----cCCceecc
Q 023798 148 TGIVDYTNYDDMKHAIKK----LDDSEFRN 173 (277)
Q Consensus 148 ~afv~f~~~~~a~~a~~~----l~g~~~~g 173 (277)
-|-|.|.+...-.+|+.. ++..++..
T Consensus 415 aGRVtFsnqqsYi~AIsarFvql~h~d~~K 444 (520)
T KOG0129|consen 415 AGRVTFSNQQAYIKAISARFVQLDHTDIDK 444 (520)
T ss_pred cceeeecccHHHHHHHhhheEEEeccccce
Confidence 799999999999999875 44555443
No 84
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.37 E-value=1.3e-12 Score=115.39 Aligned_cols=79 Identities=30% Similarity=0.577 Sum_probs=73.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCCC
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~~ 84 (277)
-++|||||+|+.++++.||.++|+.||+|..|.++ .+++||||.+..-.+|.+|+.+|++..+.++.|+|.|+....
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li---~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI---PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeec---cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 46899999999999999999999999999999997 568999999999999999999999999999999999998655
Q ss_pred CC
Q 023798 85 GR 86 (277)
Q Consensus 85 ~~ 86 (277)
..
T Consensus 497 ~k 498 (894)
T KOG0132|consen 497 PK 498 (894)
T ss_pred cc
Confidence 43
No 85
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=4.2e-12 Score=93.81 Aligned_cols=78 Identities=17% Similarity=0.223 Sum_probs=67.2
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC-CCEEEEEEcChhhHHHHHHHcCCceeccceeeeEEEeecc
Q 023798 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~-~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 185 (277)
..+.|||+|||.++.+.+|+++|.+||.|..|.+...+. ..||||+|++..+|+.|+..-+|..++|+. ++|+..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~r----LRVEfp 80 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCR----LRVEFP 80 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcce----EEEEec
Confidence 357999999999999999999999999999999977654 459999999999999999999999999954 444444
Q ss_pred ccC
Q 023798 186 DHR 188 (277)
Q Consensus 186 ~~~ 188 (277)
+..
T Consensus 81 rgg 83 (241)
T KOG0105|consen 81 RGG 83 (241)
T ss_pred cCC
Confidence 433
No 86
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.35 E-value=6.1e-12 Score=99.86 Aligned_cols=70 Identities=14% Similarity=0.235 Sum_probs=63.5
Q ss_pred cceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecC-CCCEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 108 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~-~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
..+|||+||++.+++++|+++|+.||+|..+.+..+. ..+||||+|++.++|+.|+. |+|..+.|+.+..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~V 74 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTI 74 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEE
Confidence 4699999999999999999999999999999999886 46799999999999999996 9999999955433
No 87
>smart00361 RRM_1 RNA recognition motif.
Probab=99.34 E-value=5.3e-12 Score=81.83 Aligned_cols=58 Identities=28% Similarity=0.546 Sum_probs=51.7
Q ss_pred HHHHHHHHh----ccCceeEEE-eec---C--CCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEE
Q 023798 20 EREVEDLFY----KYGPIAHID-LKI---P--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (277)
Q Consensus 20 ~~~L~~~F~----~~G~v~~v~-~~~---~--~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 77 (277)
+++|+++|. .||.|..|. +.. + +.++|||||+|.+.++|.+|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999999 999999985 422 3 778999999999999999999999999999999876
No 88
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.32 E-value=8.7e-12 Score=81.01 Aligned_cols=65 Identities=23% Similarity=0.412 Sum_probs=58.3
Q ss_pred EEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC---CCEEEEEEcChhhHHHHHHHcCCceeccce
Q 023798 111 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (277)
Q Consensus 111 l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (277)
|+|.|||+.+++++|.++|..||.|..+.+..++. .++|||+|.+.++|+.|++.+++..++|+.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~ 68 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRK 68 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEE
Confidence 68999999999999999999999999999998864 459999999999999999999999999954
No 89
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=1.7e-11 Score=85.96 Aligned_cols=74 Identities=19% Similarity=0.302 Sum_probs=66.3
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC----CEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
...++-|||.++.+++++++|.+.|..||+|+++.+..+..+ |||+|+|++.++|+.|+..+||..+-|..+.+
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 346789999999999999999999999999999999888655 49999999999999999999999999855433
No 90
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=3.3e-11 Score=104.12 Aligned_cols=170 Identities=21% Similarity=0.319 Sum_probs=132.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcc-----------C-ceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCC
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKY-----------G-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~-----------G-~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 72 (277)
-...++|+++|+.++++.+..+|..- | .|..+.+. ..++||||+|.+.+.|..|+. +++..+.|
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n---~~~nfa~ie~~s~~~at~~~~-~~~~~f~g 249 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN---LEKNFAFIEFRSISEATEAMA-LDGIIFEG 249 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec---ccccceeEEecCCCchhhhhc-ccchhhCC
Confidence 45679999999999999999999754 2 25556554 447899999999999999999 89999999
Q ss_pred ceEEEEEccCCCCCCCCCCCC----CCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC---
Q 023798 73 HRLRVELAHGGRGRSSSDRHS----SHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS--- 145 (277)
Q Consensus 73 ~~l~v~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~--- 145 (277)
.++++.-.......+...... .................++|++||..+++.++.++...||.+....+..+..
T Consensus 250 ~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~ 329 (500)
T KOG0120|consen 250 RPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGN 329 (500)
T ss_pred CCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccccc
Confidence 998876554433332221111 1122222233445678999999999999999999999999999888887754
Q ss_pred -CCEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 146 -GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 146 -~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
++|||.+|.+......|++.|||..+.+..+.+
T Consensus 330 skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvv 363 (500)
T KOG0120|consen 330 SKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVV 363 (500)
T ss_pred ccceeeeeeeCCcchhhhhcccchhhhcCceeEe
Confidence 469999999999999999999999999865443
No 91
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=6e-12 Score=113.03 Aligned_cols=151 Identities=21% Similarity=0.316 Sum_probs=128.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecC--CCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~--~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
.++.|||+|||+..+++.+|+..|..+|.|..|.|... +....||||.|.+...+-.|+..+.+..|..-.+.+.+..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 47899999999999999999999999999999999543 4445699999999999999999899888875555555442
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHH
Q 023798 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKH 161 (277)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~ 161 (277)
. .....+.+++++|+..+....|...|..||.|..|.+-.... ||+|.|++...|+.
T Consensus 450 ~---------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~--yayi~yes~~~aq~ 506 (975)
T KOG0112|consen 450 P---------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQP--YAYIQYESPPAAQA 506 (975)
T ss_pred c---------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCc--ceeeecccCccchh
Confidence 1 223457899999999999999999999999999988765544 99999999999999
Q ss_pred HHHHcCCceeccceee
Q 023798 162 AIKKLDDSEFRNAFSR 177 (277)
Q Consensus 162 a~~~l~g~~~~g~~~~ 177 (277)
|+..|.|..+++....
T Consensus 507 a~~~~rgap~G~P~~r 522 (975)
T KOG0112|consen 507 ATHDMRGAPLGGPPRR 522 (975)
T ss_pred hHHHHhcCcCCCCCcc
Confidence 9999999999986543
No 92
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=1e-11 Score=97.00 Aligned_cols=82 Identities=22% Similarity=0.482 Sum_probs=74.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEE
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 79 (277)
+.+.|+|||..||.+..+.+|.+.|-.||.|++.++.. ++++++|+||.|.++.+|+.||..|||..|+=+.|+|++
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 34679999999999999999999999999999988843 689999999999999999999999999999999999988
Q ss_pred ccCCC
Q 023798 80 AHGGR 84 (277)
Q Consensus 80 a~~~~ 84 (277)
..+..
T Consensus 362 KRPkd 366 (371)
T KOG0146|consen 362 KRPKD 366 (371)
T ss_pred cCccc
Confidence 76443
No 93
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=2.8e-11 Score=84.14 Aligned_cols=76 Identities=17% Similarity=0.212 Sum_probs=67.2
Q ss_pred CccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC----CEEEEEEcChhhHHHHHHHcCCceeccceeeeEEE
Q 023798 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (277)
Q Consensus 106 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 181 (277)
...++|||+||...+++++|-++|+++|+|..|.+-.+..+ |||||+|...++|..|+..++|..++. ..|+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLdd----r~ir 109 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDD----RPIR 109 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccc----ccee
Confidence 35689999999999999999999999999999988777544 599999999999999999999999998 5566
Q ss_pred eecc
Q 023798 182 VREY 185 (277)
Q Consensus 182 ~~~~ 185 (277)
++.+
T Consensus 110 ~D~D 113 (153)
T KOG0121|consen 110 IDWD 113 (153)
T ss_pred eecc
Confidence 6544
No 94
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.24 E-value=3.5e-11 Score=98.52 Aligned_cols=168 Identities=18% Similarity=0.196 Sum_probs=113.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccC----ceeEEEe-ec-CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 7 RTLYVGNLPGDIREREVEDLFYKYG----PIAHIDL-KI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~L~~~F~~~G----~v~~v~~-~~-~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
-.|-+.+||+++++.|+.++|..-. .+..|-+ .. +++..|-|||.|..+++|+.|+. -|...++-+.|.+.-+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELFRS 240 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHHHH
Confidence 4567889999999999999997322 2334444 33 78899999999999999999998 4554554444433222
Q ss_pred cCCC--------C--CCCCCCCCCCCC--CCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCc-eeE--EEEEec--
Q 023798 81 HGGR--------G--RSSSDRHSSHSS--GRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGD-VCF--SQVFRD-- 143 (277)
Q Consensus 81 ~~~~--------~--~~~~~~~~~~~~--~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~-i~~--~~~~~~-- 143 (277)
.... . .-.........+ .....+.......|-+.+||+..+.++|.++|..|.. |.. +.+..+
T Consensus 241 TaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q 320 (508)
T KOG1365|consen 241 TAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ 320 (508)
T ss_pred hHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC
Confidence 1000 0 000000000111 1112233344678999999999999999999999884 444 666555
Q ss_pred -CCCCEEEEEEcChhhHHHHHHHcCCceeccce
Q 023798 144 -GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (277)
Q Consensus 144 -~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (277)
...|-|||+|.+.++|..|..+.+++.+..++
T Consensus 321 GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RY 353 (508)
T KOG1365|consen 321 GRPSGEAFIQMRNAERARAAAQKCHKKLMKSRY 353 (508)
T ss_pred CCcChhhhhhhhhhHHHHHHHHHHHHhhcccce
Confidence 34468999999999999999998888886643
No 95
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=2.3e-12 Score=97.76 Aligned_cols=139 Identities=20% Similarity=0.279 Sum_probs=111.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccC
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~ 82 (277)
..+||||+||...++++-|.++|-+-|+|..|.|+. ++..+ ||||.|.++.++..|++.+||..+.+..++|++-.+
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 458999999999999999999999999999999954 45556 999999999999999999999999999999877643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC---CCEEEEEEcChhhH
Q 023798 83 GRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDM 159 (277)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~afv~f~~~~~a 159 (277)
..-. -|...++++.+.+.|+..|.+..+.+..+.+ ..++|+.+.-.-..
T Consensus 87 ~sha----------------------------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~ 138 (267)
T KOG4454|consen 87 NSHA----------------------------PLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAV 138 (267)
T ss_pred CCcc----------------------------hhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcC
Confidence 2211 1445667888888899999888888876654 34788888777777
Q ss_pred HHHHHHcCCceec
Q 023798 160 KHAIKKLDDSEFR 172 (277)
Q Consensus 160 ~~a~~~l~g~~~~ 172 (277)
..++....+....
T Consensus 139 P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 139 PFALDLYQGLELF 151 (267)
T ss_pred cHHhhhhcccCcC
Confidence 7777776665544
No 96
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=1.2e-10 Score=90.00 Aligned_cols=79 Identities=27% Similarity=0.308 Sum_probs=69.5
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC----CEEEEEEcChhhHHHHHHHcCCceeccceeeeEE
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 180 (277)
....++|-|.||+.++++.+|+++|.+||.|..+.+..++.+ |||||.|.+.++|++|++.|||.-+++ .-+
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~----LIL 261 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDN----LIL 261 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccce----EEE
Confidence 346788999999999999999999999999999999999765 499999999999999999999999988 555
Q ss_pred Eeecccc
Q 023798 181 RVREYDH 187 (277)
Q Consensus 181 ~~~~~~~ 187 (277)
+++..++
T Consensus 262 rvEwskP 268 (270)
T KOG0122|consen 262 RVEWSKP 268 (270)
T ss_pred EEEecCC
Confidence 5555443
No 97
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=7.8e-11 Score=78.81 Aligned_cols=73 Identities=16% Similarity=0.206 Sum_probs=65.1
Q ss_pred CCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC-CCEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 104 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~-~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
++.-..-|||.|||..+|.+++-++|.+||.|..|.+-..+. .|.|||.|++..+|++|+++|.|..+.+...
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl 87 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYL 87 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceE
Confidence 334557899999999999999999999999999999987754 4799999999999999999999999999543
No 98
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.22 E-value=9e-11 Score=91.78 Aligned_cols=68 Identities=21% Similarity=0.343 Sum_probs=62.0
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC-CCEEEEEEcChhhHHHHHHHcCCceeccce
Q 023798 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~-~~~afv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (277)
.+++|+|+||++.+++++|+++|+.||+|..|.+..+.. +++|||+|++.++++.|+. |+|..|.+..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~ 72 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQR 72 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCce
Confidence 457999999999999999999999999999999998854 3599999999999999995 9999999854
No 99
>smart00362 RRM_2 RNA recognition motif.
Probab=99.22 E-value=1.3e-10 Score=75.38 Aligned_cols=66 Identities=21% Similarity=0.365 Sum_probs=60.0
Q ss_pred eEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecC--CCCEEEEEEcChhhHHHHHHHcCCceeccce
Q 023798 110 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG--SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (277)
Q Consensus 110 ~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~--~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (277)
+|+|.|||..+++++|+++|.+||.+..+.+..+. ..++|||+|.+.++|+.|+..+++..+.|..
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~ 68 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRP 68 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEE
Confidence 48999999999999999999999999999888765 3469999999999999999999999998844
No 100
>PLN03213 repressor of silencing 3; Provisional
Probab=99.22 E-value=6.7e-11 Score=100.00 Aligned_cols=71 Identities=17% Similarity=0.254 Sum_probs=64.9
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcCh--hhHHHHHHHcCCceeccceee
Q 023798 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNY--DDMKHAIKKLDDSEFRNAFSR 177 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~--~~a~~a~~~l~g~~~~g~~~~ 177 (277)
....|||+||++.+++++|...|..||.|..+.|+....++||||+|... .++.+|+..|||..+.|+.++
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LK 81 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLR 81 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeE
Confidence 45799999999999999999999999999999999887788999999987 789999999999999995443
No 101
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=1.2e-10 Score=93.74 Aligned_cols=73 Identities=21% Similarity=0.215 Sum_probs=66.0
Q ss_pred CCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecC--CCCEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG--SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 104 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~--~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
.+.....|+|.|||....+-||+.+|.+||.|.+|+|+.+. .+||+||+|++.+||++|.++|||..+.|+++
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkI 166 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKI 166 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEE
Confidence 34456799999999999999999999999999999999885 45799999999999999999999999999543
No 102
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=1.9e-10 Score=88.62 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=62.3
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC----CEEEEEEcChhhHHHHHHHcCCceeccceeeeEE
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 180 (277)
...-++|||+||++++..+.|+++|++||+|+.+.|+.|+.. ||+||+|.+.+.|.+|++. -+-.|+|+...+.+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 345689999999999999999999999999999999988644 5999999999999999984 33456665544443
No 103
>smart00360 RRM RNA recognition motif.
Probab=99.13 E-value=5.6e-10 Score=72.01 Aligned_cols=63 Identities=19% Similarity=0.374 Sum_probs=57.4
Q ss_pred ccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceeccce
Q 023798 113 VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (277)
Q Consensus 113 v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (277)
|.|||..+++++|+++|.+||.|..+.+..++. .++|||+|.+.++|..|+..+++..+.|..
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~ 67 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRP 67 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcE
Confidence 578999999999999999999999999988764 569999999999999999999999998854
No 104
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.12 E-value=1.6e-10 Score=85.44 Aligned_cols=81 Identities=21% Similarity=0.372 Sum_probs=70.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEE-E---eecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHI-D---LKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v-~---~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
-+..|||+||.+++++..|.+.|+.||.+... + ...++.++|||||.|.+.+.+.+|+..+||..+..+++.|.++
T Consensus 95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred ccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 34689999999999999999999999987652 2 2446788999999999999999999999999999999999999
Q ss_pred cCCCC
Q 023798 81 HGGRG 85 (277)
Q Consensus 81 ~~~~~ 85 (277)
.....
T Consensus 175 ~k~~~ 179 (203)
T KOG0131|consen 175 FKKDT 179 (203)
T ss_pred EecCC
Confidence 75443
No 105
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=3e-10 Score=92.04 Aligned_cols=77 Identities=31% Similarity=0.576 Sum_probs=67.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHh-cCCCccCCceEEEEEcc
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRG-RDGYDFDGHRLRVELAH 81 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~-l~g~~~~g~~l~v~~a~ 81 (277)
+....+|||++|-..+++.+|+++|.+||+|..|.+.. .+++|||+|.+.++|+.|... +|...|+|..|.|.|..
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~---~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP---RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec---ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 34568999999999999999999999999999999852 367999999999999998765 66677899999999987
Q ss_pred C
Q 023798 82 G 82 (277)
Q Consensus 82 ~ 82 (277)
+
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 6
No 106
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.11 E-value=9.1e-10 Score=71.68 Aligned_cols=67 Identities=21% Similarity=0.380 Sum_probs=61.1
Q ss_pred eEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC---CCEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 110 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 110 ~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
+|+|.|||..+++++|.++|..+|.|..+.+..++. .++|||+|.+.++|+.|++.+++..+.|...
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~ 70 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPL 70 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 478999999999999999999999999999998764 5699999999999999999999999988543
No 107
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.10 E-value=3.6e-10 Score=85.38 Aligned_cols=79 Identities=28% Similarity=0.444 Sum_probs=71.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcc-CceeEEEe---ecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKY-GPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~-G~v~~v~~---~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
....+||..||.-+.+.+|..+|.+| |.|..+.+ ..||.++|||||+|.+++.|.-|-+.||+..|.|+.|.|.+.
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 45678999999999999999999998 77888888 458999999999999999999999999999999999999998
Q ss_pred cCC
Q 023798 81 HGG 83 (277)
Q Consensus 81 ~~~ 83 (277)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 654
No 108
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=5.6e-10 Score=90.71 Aligned_cols=75 Identities=19% Similarity=0.260 Sum_probs=68.7
Q ss_pred CCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCC----EEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGT----TGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 104 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~----~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
..++.+.|||+.|.+-++.++|.-+|+.||.|..|.++.+..+| ||||+|++.+++++|.-+|++..|+.+.+++
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 34688999999999999999999999999999999999998776 9999999999999999999999999855443
No 109
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.06 E-value=9e-10 Score=94.78 Aligned_cols=81 Identities=26% Similarity=0.480 Sum_probs=73.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccC
Q 023798 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (277)
Q Consensus 6 ~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~ 82 (277)
.++|||.+|+..+-..+|+.||++||.|+..+++. ++..++|+||+|.+.++|.++|..||-..|.|+.|.|+-++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 47899999999999999999999999999999854 455678999999999999999999999999999999999986
Q ss_pred CCCC
Q 023798 83 GRGR 86 (277)
Q Consensus 83 ~~~~ 86 (277)
....
T Consensus 485 Ep~G 488 (940)
T KOG4661|consen 485 EPGG 488 (940)
T ss_pred Cccc
Confidence 5543
No 110
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.03 E-value=2.2e-09 Score=66.22 Aligned_cols=53 Identities=19% Similarity=0.374 Sum_probs=46.3
Q ss_pred HHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 125 LKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 125 l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
|.++|++||+|..+.+.... +++|||+|.+.++|+.|+..|||..++|+.+.+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V 53 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKV 53 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 67899999999999998776 579999999999999999999999999965433
No 111
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.99 E-value=2.2e-09 Score=85.04 Aligned_cols=80 Identities=26% Similarity=0.505 Sum_probs=71.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccC
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~ 82 (277)
-+.+|+|.|||+.++++||++||..||+++.+-+.+ .+.+.|.|-|.|...++|..|+..+||..++|+++++.....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 347899999999999999999999999888888854 578899999999999999999999999999999999988764
Q ss_pred CC
Q 023798 83 GR 84 (277)
Q Consensus 83 ~~ 84 (277)
..
T Consensus 162 ~~ 163 (243)
T KOG0533|consen 162 PS 163 (243)
T ss_pred cc
Confidence 44
No 112
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.98 E-value=1.3e-10 Score=96.37 Aligned_cols=143 Identities=24% Similarity=0.401 Sum_probs=116.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcc--CceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCc-cCCceEEEEEccCC
Q 023798 7 RTLYVGNLPGDIREREVEDLFYKY--GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYD-FDGHRLRVELAHGG 83 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~L~~~F~~~--G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~-~~g~~l~v~~a~~~ 83 (277)
+.+|++||.+.++..+|..+|..- +--..+-+. .||+||.+.+...|.+|++.++|.. +.|+.+.|.+....
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-----~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-----SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-----cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 579999999999999999999843 322333333 5899999999999999999999865 78999999988643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEE-ecCCCCEEEEEEcChhhHHHH
Q 023798 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVF-RDGSGTTGIVDYTNYDDMKHA 162 (277)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~-~~~~~~~afv~f~~~~~a~~a 162 (277)
.. ...++-|.|+|+...++.|..++..||.+..|... .+......-|.|...+.++.|
T Consensus 77 kq---------------------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~a 135 (584)
T KOG2193|consen 77 KQ---------------------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQA 135 (584)
T ss_pred HH---------------------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 32 33578899999999999999999999999887664 333344556788889999999
Q ss_pred HHHcCCceeccce
Q 023798 163 IKKLDDSEFRNAF 175 (277)
Q Consensus 163 ~~~l~g~~~~g~~ 175 (277)
+.+++|..+.+..
T Consensus 136 i~kl~g~Q~en~~ 148 (584)
T KOG2193|consen 136 IHKLNGPQLENQH 148 (584)
T ss_pred HHhhcchHhhhhh
Confidence 9999999988744
No 113
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.94 E-value=1.6e-09 Score=95.49 Aligned_cols=79 Identities=27% Similarity=0.444 Sum_probs=71.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecC------CCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEE
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP------PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~------~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 78 (277)
-++.|||+||++.++++.|...|+.||+|..|+|++. .....||||.|-+-.+|+.|+..|+|..+.+..+++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 4678999999999999999999999999999999763 2456799999999999999999999999999999999
Q ss_pred EccCC
Q 023798 79 LAHGG 83 (277)
Q Consensus 79 ~a~~~ 83 (277)
|++.-
T Consensus 253 Wgk~V 257 (877)
T KOG0151|consen 253 WGKAV 257 (877)
T ss_pred ccccc
Confidence 98643
No 114
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.93 E-value=9.5e-11 Score=105.03 Aligned_cols=133 Identities=23% Similarity=0.332 Sum_probs=111.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEe---ecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~---~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
..+++||.||++.+.+.+|...|..+|.+..+.+ ...+..+|+|||+|..++++.+||. ++...+.|+
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~-f~d~~~~gK-------- 736 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVA-FRDSCFFGK-------- 736 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhh-hhhhhhhhh--------
Confidence 3468899999999999999999999988777666 3467889999999999999999999 444444441
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEec---CCCCEEEEEEcChhh
Q 023798 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD---GSGTTGIVDYTNYDD 158 (277)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~~afv~f~~~~~ 158 (277)
..++|.|+|...|.++|+.++..+|.+....++.. .++|.|+|.|.+..+
T Consensus 737 ---------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~ 789 (881)
T KOG0128|consen 737 ---------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEAD 789 (881)
T ss_pred ---------------------------hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcch
Confidence 37889999999999999999999999988766554 456799999999999
Q ss_pred HHHHHHHcCCceecc
Q 023798 159 MKHAIKKLDDSEFRN 173 (277)
Q Consensus 159 a~~a~~~l~g~~~~g 173 (277)
+..++..++...++-
T Consensus 790 ~s~~~~s~d~~~~rE 804 (881)
T KOG0128|consen 790 ASRKVASVDVAGKRE 804 (881)
T ss_pred hhhhcccchhhhhhh
Confidence 999998877776654
No 115
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.92 E-value=7.8e-10 Score=95.06 Aligned_cols=156 Identities=20% Similarity=0.194 Sum_probs=98.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~ 83 (277)
-++.+|+|-|||..+++++|..+|+.||+|..|.. +....+.+||+|.|..+|+.|+.+||+..+.|+.|+.......
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~--t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~ 150 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE--TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARR 150 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc--ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcccc
Confidence 36789999999999999999999999999999654 4456889999999999999999999999999999882111100
Q ss_pred CCCCCCCCC--CCCCCCCCCCCCCC-ccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHH
Q 023798 84 RGRSSSDRH--SSHSSGRGRGVSRR-SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMK 160 (277)
Q Consensus 84 ~~~~~~~~~--~~~~~~~~~~~~~~-~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~ 160 (277)
......... ......-...++.- ....+ ++.|++..+..-++.++..+|.+.. ....... .--|++|.+..++.
T Consensus 151 ~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~-~g~l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~-hq~~~~~~~~~s~a 227 (549)
T KOG4660|consen 151 AMGLQSGTSFLNHFGSPLANSPPGGWPRGQL-FGMLSPTRSSILLEHISSVDGSSPG-RETPLLN-HQRFVEFADNRSYA 227 (549)
T ss_pred cchhcccchhhhhccchhhcCCCCCCcCCcc-eeeeccchhhhhhhcchhccCcccc-ccccchh-hhhhhhhccccchh
Confidence 000000000 00000000000000 01122 2238888888777777888887665 2211111 14577788877774
Q ss_pred HHHH
Q 023798 161 HAIK 164 (277)
Q Consensus 161 ~a~~ 164 (277)
.+..
T Consensus 228 ~~~~ 231 (549)
T KOG4660|consen 228 FSEP 231 (549)
T ss_pred hccc
Confidence 4444
No 116
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.91 E-value=2.5e-09 Score=88.15 Aligned_cols=83 Identities=27% Similarity=0.546 Sum_probs=72.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
.+.+|||++||.++++.+|++.|.+||.|..+.++. +..+++|+||.|.+.+++.+++. +..+.|.|+.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 367999999999999999999999999988888855 45789999999999999999988 88899999999999998
Q ss_pred CCCCCCC
Q 023798 82 GGRGRSS 88 (277)
Q Consensus 82 ~~~~~~~ 88 (277)
+......
T Consensus 175 pk~~~~~ 181 (311)
T KOG4205|consen 175 PKEVMQS 181 (311)
T ss_pred chhhccc
Confidence 6655443
No 117
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.91 E-value=1.9e-10 Score=85.01 Aligned_cols=73 Identities=15% Similarity=0.188 Sum_probs=65.9
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC----CEEEEEEcChhhHHHHHHHcCCceeccceeeeE
Q 023798 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (277)
...-|||+|||+++|+.+|..+|++||+|..|.++.+..+ ||||+.|++.....-|+..|||..+.|+.+++-
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 3457999999999999999999999999999999999755 499999999999999999999999999655443
No 118
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.5e-09 Score=82.66 Aligned_cols=72 Identities=22% Similarity=0.271 Sum_probs=65.1
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEec----CCCCEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD----GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~----~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
...+|||++|..++++..|...|-+||.|..|.++.+ +..+||||+|+-.+||..|++.||+.++.|+.+++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirV 84 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRV 84 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEE
Confidence 4469999999999999999999999999999999887 35579999999999999999999999999955444
No 119
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.89 E-value=1.5e-08 Score=68.88 Aligned_cols=75 Identities=20% Similarity=0.316 Sum_probs=64.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcc--CceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccC----CceEEE
Q 023798 7 RTLYVGNLPGDIREREVEDLFYKY--GPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD----GHRLRV 77 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~L~~~F~~~--G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~----g~~l~v 77 (277)
+||.|.|||...|.++|.+++... |...-+.++. +..+.|||||.|.+++.|......++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 699999999999999999999843 6677777755 4678999999999999999999999999985 566777
Q ss_pred EEcc
Q 023798 78 ELAH 81 (277)
Q Consensus 78 ~~a~ 81 (277)
.||.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 7775
No 120
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.88 E-value=7.6e-08 Score=81.86 Aligned_cols=169 Identities=19% Similarity=0.237 Sum_probs=112.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeE-EEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAH-IDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~-v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
+.-+|-+.+||+.||++||.++|+..-.|.. |.++. -+.+.|-|||+|++++.|+.|+. -|...|.-+-|.|..+.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSS 180 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhH
Confidence 4568999999999999999999997755555 33333 45678999999999999999999 67777777878776554
Q ss_pred CCCC-------------CCCCCC-----C-------------CCC---CCC-----------------C-----------
Q 023798 82 GGRG-------------RSSSDR-----H-------------SSH---SSG-----------------R----------- 99 (277)
Q Consensus 82 ~~~~-------------~~~~~~-----~-------------~~~---~~~-----------------~----------- 99 (277)
.... +.+... . ... ... +
T Consensus 181 ~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~ 260 (510)
T KOG4211|consen 181 RAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYP 260 (510)
T ss_pred HHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccC
Confidence 0000 000000 0 000 000 0
Q ss_pred ------------CCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecC---CCCEEEEEEcChhhHHHHHH
Q 023798 100 ------------GRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIK 164 (277)
Q Consensus 100 ------------~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~---~~~~afv~f~~~~~a~~a~~ 164 (277)
...........+...+||...++.++..+|+..-.+ .+.|...+ .++-|+|+|.+.++|..|+.
T Consensus 261 ~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF~t~edav~Ams 339 (510)
T KOG4211|consen 261 VSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEFATGEDAVGAMG 339 (510)
T ss_pred CCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeecccchhhHhhhc
Confidence 000000122567788999999999999999876544 44444443 34589999999999999987
Q ss_pred HcCCceecccee
Q 023798 165 KLDDSEFRNAFS 176 (277)
Q Consensus 165 ~l~g~~~~g~~~ 176 (277)
-++..+....+
T Consensus 340 -kd~anm~hrYV 350 (510)
T KOG4211|consen 340 -KDGANMGHRYV 350 (510)
T ss_pred -cCCcccCccee
Confidence 45555555433
No 121
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.87 E-value=5.4e-09 Score=89.50 Aligned_cols=75 Identities=32% Similarity=0.606 Sum_probs=65.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccC
Q 023798 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~ 82 (277)
.+|||.|||.++++++|+++|..||+|+...|.. .+.+.+||||+|.+.++++.||. .+-..++++.|.|+--..
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEeccc
Confidence 4599999999999999999999999999988832 24444899999999999999999 568889999999987653
No 122
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.83 E-value=2.1e-08 Score=83.01 Aligned_cols=71 Identities=23% Similarity=0.372 Sum_probs=64.2
Q ss_pred cceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecC----CCCEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 108 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
..+|||+|||..+++++|.++|.+||.+..+.+..+. ..++|||+|.+.++|..|+..+++..+.|+.+.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v 189 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRV 189 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEe
Confidence 5899999999999999999999999999999988774 3469999999999999999999999999955433
No 123
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=3.8e-08 Score=76.44 Aligned_cols=63 Identities=22% Similarity=0.334 Sum_probs=58.8
Q ss_pred ceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccce
Q 023798 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (277)
Q Consensus 109 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (277)
..+||++||+.+.+.+|+.+|..||.+..+.+... |+||+|.+..+|..|+..+|+..+.|..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~g----f~fv~fed~rda~Dav~~l~~~~l~~e~ 64 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKNG----FGFVEFEDPRDADDAVHDLDGKELCGER 64 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeecc----cceeccCchhhhhcccchhcCceeccee
Confidence 47899999999999999999999999999988765 8999999999999999999999999954
No 124
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.82 E-value=6.8e-09 Score=82.53 Aligned_cols=79 Identities=25% Similarity=0.411 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.+...|||+|+.+.+|.+++..+|+.||.|..+.++. .++++|||||+|.+.+.+..|+. |||..|.|+.+.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 3678999999999999999999999999998777744 46789999999999999999999 9999999999999987
Q ss_pred cCC
Q 023798 81 HGG 83 (277)
Q Consensus 81 ~~~ 83 (277)
.-.
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 643
No 125
>smart00361 RRM_1 RNA recognition motif.
Probab=98.79 E-value=3.8e-08 Score=63.63 Aligned_cols=55 Identities=16% Similarity=0.237 Sum_probs=45.7
Q ss_pred HHHHHHHHh----hcCceeEEE-EEecC------CCCEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 122 WQDLKDHMR----RAGDVCFSQ-VFRDG------SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 122 ~~~l~~~f~----~~g~i~~~~-~~~~~------~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
+++|+++|. +||.|..+. +..+. ..|+|||+|.+.++|.+|+..|||..+.|+.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l 67 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTV 67 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 467788887 999999985 44432 35699999999999999999999999999654
No 126
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.79 E-value=1.5e-08 Score=83.41 Aligned_cols=158 Identities=20% Similarity=0.247 Sum_probs=119.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEe---ecCCCCCceEEEEEcChHHHHHHHHhcCC-CccCCceEEEEEc
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDG-YDFDGHRLRVELA 80 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~---~~~~~~~g~afV~f~~~~~A~~a~~~l~g-~~~~g~~l~v~~a 80 (277)
..+++|++++..++.+.++..+|..+|.+....+ .....++++++|.|...+.+..|+. +.+ ..+.+..+...+.
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~-~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALE-ESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHH-hhhccccccccccCccc
Confidence 4688999999999999999999999998776665 2356779999999999999999999 455 4555655554444
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCccceEE-ccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCC----EEEEEEcC
Q 023798 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVL-VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGT----TGIVDYTN 155 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~----~afv~f~~ 155 (277)
........ ............+++ |.+|+..++.++|..+|..+|.|..+.+...+..+ +|+|.|..
T Consensus 166 ~~~~~~~~---------n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~ 236 (285)
T KOG4210|consen 166 TRRGLRPK---------NKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSA 236 (285)
T ss_pred cccccccc---------chhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhh
Confidence 33221100 000001112223444 99999999999999999999999999999887654 89999999
Q ss_pred hhhHHHHHHHcCCceecc
Q 023798 156 YDDMKHAIKKLDDSEFRN 173 (277)
Q Consensus 156 ~~~a~~a~~~l~g~~~~g 173 (277)
...+..++.. ....+.+
T Consensus 237 ~~~~~~~~~~-~~~~~~~ 253 (285)
T KOG4210|consen 237 GNSKKLALND-QTRSIGG 253 (285)
T ss_pred chhHHHHhhc-ccCcccC
Confidence 9999999986 7777776
No 127
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.79 E-value=1.6e-08 Score=87.24 Aligned_cols=68 Identities=22% Similarity=0.313 Sum_probs=63.5
Q ss_pred ceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC----CEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 109 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
..+||+|+|+++++++|.++|...|.|..+.++.|..+ ||||++|.+.++|..|++.|||.++.|+.+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l 90 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKL 90 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceE
Confidence 79999999999999999999999999999999988654 599999999999999999999999999543
No 128
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.72 E-value=4.2e-09 Score=86.78 Aligned_cols=63 Identities=17% Similarity=0.178 Sum_probs=53.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccC
Q 023798 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~ 71 (277)
+||+|++|+..+...++.++|..+|+|....+. .+....+|.|+|....+...|+. ++|..+.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a-sk~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTA-SKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhh-ccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 689999999999999999999999999877763 23335588899999999999999 7777766
No 129
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.65 E-value=2.1e-07 Score=60.27 Aligned_cols=70 Identities=26% Similarity=0.398 Sum_probs=49.3
Q ss_pred CeEEEcCCCCCCCHHH----HHHHHhccC-ceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 7 RTLYVGNLPGDIRERE----VEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~----L~~~F~~~G-~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
..|+|.|||.+.+... |++|+..|| .|..| . .+.|+|.|.+++.|..|...|+|..+.|..|.|.+..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~-----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S-----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e-----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 4689999999998877 566777886 45554 2 4799999999999999999999999999999999985
Q ss_pred CC
Q 023798 82 GG 83 (277)
Q Consensus 82 ~~ 83 (277)
..
T Consensus 76 ~~ 77 (90)
T PF11608_consen 76 KN 77 (90)
T ss_dssp -S
T ss_pred Cc
Confidence 43
No 130
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.62 E-value=8.5e-07 Score=73.30 Aligned_cols=158 Identities=18% Similarity=0.220 Sum_probs=107.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCcee---EEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIA---HIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~---~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
+++..|-..+||+..++.+|..+|.-.-... -+.+...+.-.|.|.|.|.++|.-+.|++ -+...+.++.|.|.-+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeecc
Confidence 5677788899999999999999997432111 12223345667899999999999999998 6777888999998777
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhh---c-Cc---eeEEEEEecCCCCEEEEEE
Q 023798 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRR---A-GD---VCFSQVFRDGSGTTGIVDY 153 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~---~-g~---i~~~~~~~~~~~~~afv~f 153 (277)
.....-.-...... ....-.++.....|-+.+||+++++.++.++|.. . |. |.++.-..+..+|-|||.|
T Consensus 137 ~ge~f~~iagg~s~---e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlf 213 (508)
T KOG1365|consen 137 TGEEFLKIAGGTSN---EAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLF 213 (508)
T ss_pred CchhheEecCCccc---cCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEe
Confidence 64432111000000 0000112223445667899999999999999962 1 22 3334444445667999999
Q ss_pred cChhhHHHHHHH
Q 023798 154 TNYDDMKHAIKK 165 (277)
Q Consensus 154 ~~~~~a~~a~~~ 165 (277)
..+++|+.|+.+
T Consensus 214 a~ee~aq~aL~k 225 (508)
T KOG1365|consen 214 ACEEDAQFALRK 225 (508)
T ss_pred cCHHHHHHHHHH
Confidence 999999999974
No 131
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.57 E-value=5.9e-08 Score=74.33 Aligned_cols=66 Identities=29% Similarity=0.440 Sum_probs=56.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCcc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF 70 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~ 70 (277)
+.-.||||.||.+++||++|+++|+.|-....++|..-+. ...|||+|.+.+.|..|+..|+|..|
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g-~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGG-MPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCC-cceEeecHHHHHHHHHHHHHhhccee
Confidence 4567899999999999999999999998877777743322 45899999999999999999998776
No 132
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.56 E-value=3.4e-07 Score=80.98 Aligned_cols=169 Identities=11% Similarity=-0.009 Sum_probs=115.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcc-CceeEEEeec-CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccC
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKY-GPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~-G~v~~v~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~ 82 (277)
+.+.+-+.+++.+++..+++++|... -.-..+.+.. .+...|.++|+|..+.++++|+. -|...+-.+.+.+..+..
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g~ 388 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPGN 388 (944)
T ss_pred hhheeeecccccccccchhhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCCc
Confidence 45667778999999999999999732 2233333322 23337899999999999999998 666777778887766542
Q ss_pred CCCCCCCC---------------CCCC-----CCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeE-EEEE
Q 023798 83 GRGRSSSD---------------RHSS-----HSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVF 141 (277)
Q Consensus 83 ~~~~~~~~---------------~~~~-----~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~-~~~~ 141 (277)
........ .+.. ...+.....+...+..|||..||..++..++.++|.....|++ |.+.
T Consensus 389 ~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt 468 (944)
T KOG4307|consen 389 LGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELT 468 (944)
T ss_pred cccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEec
Confidence 22111100 0000 0000111123346789999999999999999999998777766 6665
Q ss_pred ecCC---CCEEEEEEcChhhHHHHHHHcCCceeccc
Q 023798 142 RDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (277)
Q Consensus 142 ~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~g~ 174 (277)
..+. ..-|||.|...+++..|...-+...++.+
T Consensus 469 ~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r 504 (944)
T KOG4307|consen 469 RLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHR 504 (944)
T ss_pred cCCcccccchhhheeccccccchhhhcccccccCce
Confidence 5443 34899999999999999887777776653
No 133
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.47 E-value=1e-06 Score=76.42 Aligned_cols=70 Identities=21% Similarity=0.342 Sum_probs=62.9
Q ss_pred CccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC----CEEEEEEcChhhHHHHHHHcCCceeccce
Q 023798 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (277)
Q Consensus 106 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (277)
..+.+|+|.+|...+...+|+.+|++||+|+-+.|+.+... .|+||+|.+.++|.++|..|+..++.|+.
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrm 476 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRM 476 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhccee
Confidence 35678999999999999999999999999999999988422 29999999999999999999999999943
No 134
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.47 E-value=7.9e-07 Score=72.60 Aligned_cols=71 Identities=17% Similarity=0.259 Sum_probs=60.7
Q ss_pred CCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHH-cCCceeccc
Q 023798 102 GVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKK-LDDSEFRNA 174 (277)
Q Consensus 102 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~-l~g~~~~g~ 174 (277)
++....-.+|||++|...+++.+|.++|.+||+|..+.+..... +|||+|.+...|+.|.++ ++...++|.
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~--CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKG--CAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccc--cceeeehhhHHHHHHHHhhcceeeecce
Confidence 34556678999999999999999999999999999999987754 999999999999988877 455566773
No 135
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.47 E-value=1.9e-07 Score=72.98 Aligned_cols=76 Identities=18% Similarity=0.411 Sum_probs=66.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEe---ecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~---~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
..-.||+|.|..+++.+.|-..|.+|-.....++ ..+++++||+||.|.++.++..|+..|||..++.++|++.-+
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 4568999999999999999999999876555555 457999999999999999999999999999999999887554
No 136
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.45 E-value=5e-07 Score=70.70 Aligned_cols=155 Identities=16% Similarity=0.203 Sum_probs=109.1
Q ss_pred EEEcCCCCCCCHHH-H--HHHHhccCceeEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023798 9 LYVGNLPGDIRERE-V--EDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (277)
Q Consensus 9 l~v~nL~~~~t~~~-L--~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~ 83 (277)
.+++++-..+..+- | ...|+.+-.++..++.. .+.-.+++|+.|.....-.++-..-+++.++-.+|. .+.+.
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR--~a~gt 176 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVR--LAAGT 176 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCccee--ecccc
Confidence 34555555544444 2 55666655555555533 345578999999987777777776777777666533 33222
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecC----CCCEEEEEEcChhhH
Q 023798 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDM 159 (277)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~afv~f~~~~~a 159 (277)
....... ..-...+..||-+.|..+++.+.|-..|.+|-......++.+. .++|+||.|.+..++
T Consensus 177 swedPsl-----------~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~ 245 (290)
T KOG0226|consen 177 SWEDPSL-----------AEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADY 245 (290)
T ss_pred ccCCccc-----------ccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHH
Confidence 2111110 1223456799999999999999999999999988888888774 446999999999999
Q ss_pred HHHHHHcCCceecccee
Q 023798 160 KHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 160 ~~a~~~l~g~~~~g~~~ 176 (277)
..|+.+|+|+.++.+.+
T Consensus 246 ~rAmrem~gkyVgsrpi 262 (290)
T KOG0226|consen 246 VRAMREMNGKYVGSRPI 262 (290)
T ss_pred HHHHHhhcccccccchh
Confidence 99999999999998543
No 137
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.44 E-value=9.9e-07 Score=68.08 Aligned_cols=68 Identities=13% Similarity=0.181 Sum_probs=61.4
Q ss_pred cceEEccCCCCCCCHHHHHH----HHhhcCceeEEEEEec-CCCCEEEEEEcChhhHHHHHHHcCCceeccce
Q 023798 108 EYRVLVTGLPSSASWQDLKD----HMRRAGDVCFSQVFRD-GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (277)
Q Consensus 108 ~~~l~v~~l~~~~~~~~l~~----~f~~~g~i~~~~~~~~-~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (277)
..+|||.||+..+..++|+. +|++||+|..|..... +-.|-|||.|.+.+.|-.|+..|+|..+.|+.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~ 81 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKP 81 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCch
Confidence 34999999999999999888 9999999999988865 45679999999999999999999999999954
No 138
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.44 E-value=6.1e-07 Score=80.38 Aligned_cols=72 Identities=15% Similarity=0.242 Sum_probs=63.9
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccceeeeEE
Q 023798 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 180 (277)
..++|||++|+..+++.+|.++|+.||+|..|.++.. .++|||.+....+|.+|+.+|.+..+.++.++..+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~--R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP--RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC--CceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 6789999999999999999999999999999888665 45999999999999999999999999885544443
No 139
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.42 E-value=9.9e-07 Score=70.16 Aligned_cols=73 Identities=25% Similarity=0.291 Sum_probs=65.2
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC---CEEEEEEcChhhHHHHHHHcCCceeccceeeeE
Q 023798 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (277)
...+|+|.|||..++.++|+++|..||.+..+.+-.++.+ +.|-|.|...++|..|++.+++..++|......
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 3478999999999999999999999999999988888766 699999999999999999999999999764333
No 140
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.40 E-value=4.2e-06 Score=72.02 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=59.6
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEe----cCCCCEEEEEEcChhhHHHHHHHcCCceeccceeeeEEEe
Q 023798 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFR----DGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~----~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 182 (277)
....|||.|||.+++..+|+++|..||.|....|.. +....||||+|++..+++.|+..- -..+++ ..+.+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~----~kl~V 361 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGG----RKLNV 361 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCC----eeEEE
Confidence 345599999999999999999999999999866654 333369999999999999999955 666777 44444
Q ss_pred ecccc
Q 023798 183 REYDH 187 (277)
Q Consensus 183 ~~~~~ 187 (277)
++.+.
T Consensus 362 eek~~ 366 (419)
T KOG0116|consen 362 EEKRP 366 (419)
T ss_pred Eeccc
Confidence 44433
No 141
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.35 E-value=1.2e-06 Score=60.97 Aligned_cols=70 Identities=17% Similarity=0.347 Sum_probs=43.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCC-----ccCCceEEEEE
Q 023798 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY-----DFDGHRLRVEL 79 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~-----~~~g~~l~v~~ 79 (277)
+.|.|.+++..++.++|+++|..||.|.+|.+.. .-..|||-|.+++.|+.|+..+... .+.+..+.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~---G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR---GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T---T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC---CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 5789999999999999999999999999999863 2348999999999999999876433 45555555544
No 142
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.31 E-value=2.9e-06 Score=64.53 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=63.0
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhc-CceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceeccceeeeE
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRA-GDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~-g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (277)
......++|..+|..+.+.++..+|.++ |.+....+..+.. ++||||+|++.+.|+-|.+.||++.+.++.+.+.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3345688999999999999999999988 6777777766643 4599999999999999999999999999776544
Q ss_pred E
Q 023798 180 V 180 (277)
Q Consensus 180 i 180 (277)
.
T Consensus 126 v 126 (214)
T KOG4208|consen 126 V 126 (214)
T ss_pred E
Confidence 3
No 143
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.25 E-value=7.6e-07 Score=68.17 Aligned_cols=71 Identities=15% Similarity=0.105 Sum_probs=63.2
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC--CEEEEEEcChhhHHHHHHHcCCceeccce
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG--TTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~--~~afv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (277)
.....+|+|.|+...++++.|.++|-+.|.|..+.|..+... .||||.|+++-...-|++.+||..+.+..
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e 78 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDE 78 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccch
Confidence 345679999999999999999999999999999999877543 49999999999999999999999887743
No 144
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=98.22 E-value=1.1e-06 Score=76.44 Aligned_cols=75 Identities=12% Similarity=0.228 Sum_probs=65.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHh-ccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCcc---CCceEEEEE
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFY-KYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF---DGHRLRVEL 79 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~-~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~---~g~~l~v~~ 79 (277)
.+++.|+|.||-.-+|.-+|+.|++ .+|.|..++|- +-+..|||.|.+.++|.+...+|||..| +++.|.+.|
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD---kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD---KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHH---HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 4789999999999999999999999 78888888662 2266899999999999999999999998 477888888
Q ss_pred cc
Q 023798 80 AH 81 (277)
Q Consensus 80 a~ 81 (277)
..
T Consensus 519 ~~ 520 (718)
T KOG2416|consen 519 VR 520 (718)
T ss_pred cc
Confidence 76
No 145
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.19 E-value=1.7e-06 Score=71.23 Aligned_cols=80 Identities=31% Similarity=0.479 Sum_probs=69.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeE--------EEe---ecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCc
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAH--------IDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH 73 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~--------v~~---~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~ 73 (277)
..-+|||-+||..+++++|.++|.+||.|.. |+| +.|..+++-|.|.|.++..|++|+.-+++..|.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 4578999999999999999999999997743 222 34678999999999999999999999999999999
Q ss_pred eEEEEEccCCC
Q 023798 74 RLRVELAHGGR 84 (277)
Q Consensus 74 ~l~v~~a~~~~ 84 (277)
.|+|.+|....
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99998887544
No 146
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.19 E-value=1.6e-06 Score=75.06 Aligned_cols=71 Identities=18% Similarity=0.185 Sum_probs=61.3
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
.....+|+|.|||..++.++|.++|..||+|..+..... ..+.+||+|.+..+|+.|++.|++.++.|+.+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~ 142 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-KRGIVFVEFYDVRDAERALKALNRREIAGKRI 142 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-cCceEEEEEeehHhHHHHHHHHHHHHhhhhhh
Confidence 345579999999999999999999999999999655443 34589999999999999999999999998544
No 147
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.17 E-value=1.5e-05 Score=65.36 Aligned_cols=80 Identities=25% Similarity=0.449 Sum_probs=65.4
Q ss_pred CCCCeEEEcCCCC----CCC-------HHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCC
Q 023798 4 RASRTLYVGNLPG----DIR-------EREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (277)
Q Consensus 4 ~~~~~l~v~nL~~----~~t-------~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 72 (277)
+.+++|.|.||-. ..+ +++|.+-..+||.|..|.| .+.++.|.+.|.|.+.+.|..||..|+|.+|+|
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv-~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdg 341 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVV-YDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDG 341 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEE-eccCCCceeEEEeCChHHHHHHHHHhcCeeecc
Confidence 4678999999843 234 3345566789999999987 455778999999999999999999999999999
Q ss_pred ceEEEEEccCCC
Q 023798 73 HRLRVELAHGGR 84 (277)
Q Consensus 73 ~~l~v~~a~~~~ 84 (277)
+.|......+..
T Consensus 342 Rql~A~i~DG~t 353 (382)
T KOG1548|consen 342 RQLTASIWDGKT 353 (382)
T ss_pred eEEEEEEeCCcc
Confidence 999998886543
No 148
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.17 E-value=8.5e-07 Score=69.65 Aligned_cols=61 Identities=25% Similarity=0.451 Sum_probs=52.7
Q ss_pred HHHHHHHh-ccCceeEEEe--ecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 21 REVEDLFY-KYGPIAHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 21 ~~L~~~F~-~~G~v~~v~~--~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
++|...|+ +||+|..+++ +...+..|.+||.|...++|++|+..||+.+|.|++|.++++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 45566666 9999999987 3345678999999999999999999999999999999999974
No 149
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.11 E-value=1.7e-06 Score=67.82 Aligned_cols=70 Identities=17% Similarity=0.318 Sum_probs=59.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecC-----------CCCC----ceEEEEEcChHHHHHHHHhcCCCc
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-----------PRPP----GYAFVEFEEARDAEDAIRGRDGYD 69 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~-----------~~~~----g~afV~f~~~~~A~~a~~~l~g~~ 69 (277)
.+-+||+++||+.++...|+++|+.||+|-.|.|... +.+. .-|+|+|.+...|..+...|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3568999999999999999999999999999999432 1122 237899999999999999999999
Q ss_pred cCCce
Q 023798 70 FDGHR 74 (277)
Q Consensus 70 ~~g~~ 74 (277)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99874
No 150
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.08 E-value=7.6e-06 Score=57.02 Aligned_cols=59 Identities=22% Similarity=0.449 Sum_probs=39.7
Q ss_pred ceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCc
Q 023798 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS 169 (277)
Q Consensus 109 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~ 169 (277)
+.|.|.+++..++.++|++.|++||.|.+|.+..... .|+|.|.+.+.|+.|++.+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~--~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT--EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S--EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC--EEEEEECCcchHHHHHHHHHhc
Confidence 5688889999999999999999999999998877544 8999999999999999987544
No 151
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.07 E-value=1.8e-05 Score=70.64 Aligned_cols=73 Identities=18% Similarity=0.172 Sum_probs=64.4
Q ss_pred CCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecC-------CCCEEEEEEcChhhHHHHHHHcCCceecc
Q 023798 101 RGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-------SGTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (277)
Q Consensus 101 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~-------~~~~afv~f~~~~~a~~a~~~l~g~~~~g 173 (277)
.....+..++|||+||++.+++..|...|..||.|..+.++... ...++||.|.+..||+.|++.|+|..+.+
T Consensus 167 fDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~ 246 (877)
T KOG0151|consen 167 FDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME 246 (877)
T ss_pred CCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee
Confidence 34456678899999999999999999999999999999998652 33499999999999999999999999886
No 152
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.03 E-value=1.6e-05 Score=47.96 Aligned_cols=53 Identities=25% Similarity=0.500 Sum_probs=43.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHH
Q 023798 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAI 62 (277)
Q Consensus 6 ~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~ 62 (277)
++.|-|.+.++...+.- ..+|..||+|..+.+. ....+.||.|.+..+|+.||
T Consensus 1 ~~wI~V~Gf~~~~~~~v-l~~F~~fGeI~~~~~~---~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAEEV-LEHFASFGEIVDIYVP---ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHHHH-HHHHHhcCCEEEEEcC---CCCcEEEEEECCHHHHHhhC
Confidence 36788999998877554 5588899999998885 33569999999999999985
No 153
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.96 E-value=7.1e-06 Score=67.66 Aligned_cols=81 Identities=23% Similarity=0.417 Sum_probs=70.8
Q ss_pred CCCCCeEE-EcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEE
Q 023798 3 SRASRTLY-VGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (277)
Q Consensus 3 ~~~~~~l~-v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 78 (277)
..++.++| |+||+.++++++|+.+|..+|.|..+.++. ++..+|||||.|.....+..++.. +...+.+.++.+.
T Consensus 181 ~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 181 SGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLE 259 (285)
T ss_pred cCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccc
Confidence 34566667 999999999999999999999999999943 578899999999999999999997 8889999999998
Q ss_pred EccCCC
Q 023798 79 LAHGGR 84 (277)
Q Consensus 79 ~a~~~~ 84 (277)
...+..
T Consensus 260 ~~~~~~ 265 (285)
T KOG4210|consen 260 EDEPRP 265 (285)
T ss_pred cCCCCc
Confidence 876543
No 154
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.95 E-value=2.9e-05 Score=63.43 Aligned_cols=75 Identities=24% Similarity=0.452 Sum_probs=60.7
Q ss_pred CeEEEcCCCCCCCHHHH------HHHHhccCceeEEEeec-CC---CCCce--EEEEEcChHHHHHHHHhcCCCccCCce
Q 023798 7 RTLYVGNLPGDIREREV------EDLFYKYGPIAHIDLKI-PP---RPPGY--AFVEFEEARDAEDAIRGRDGYDFDGHR 74 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~L------~~~F~~~G~v~~v~~~~-~~---~~~g~--afV~f~~~~~A~~a~~~l~g~~~~g~~ 74 (277)
+-|||-+||+.+..+++ .++|++||.|..|.+.. +. ...+. .||+|...++|..||...+|..++|+.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 56899999998777662 57999999999999943 21 11122 399999999999999999999999999
Q ss_pred EEEEEcc
Q 023798 75 LRVELAH 81 (277)
Q Consensus 75 l~v~~a~ 81 (277)
|++.|..
T Consensus 195 lkatYGT 201 (480)
T COG5175 195 LKATYGT 201 (480)
T ss_pred EeeecCc
Confidence 9998754
No 155
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.95 E-value=0.0001 Score=50.29 Aligned_cols=66 Identities=15% Similarity=0.162 Sum_probs=56.1
Q ss_pred ceEEccCCCCCCCHHHHHHHHhh--cCceeEEEEEecC----CCCEEEEEEcChhhHHHHHHHcCCceeccc
Q 023798 109 YRVLVTGLPSSASWQDLKDHMRR--AGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (277)
Q Consensus 109 ~~l~v~~l~~~~~~~~l~~~f~~--~g~i~~~~~~~~~----~~~~afv~f~~~~~a~~a~~~l~g~~~~g~ 174 (277)
++|.|.|+|...+.++|.+++.. .|....+.++.|- +.|||||.|.+.+.|..-.+.++|..+..-
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~ 73 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNF 73 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccC
Confidence 58999999999999999998865 3566677777764 347999999999999999999999998753
No 156
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.92 E-value=1e-05 Score=66.30 Aligned_cols=75 Identities=16% Similarity=0.207 Sum_probs=62.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCc--eeEEEe---ecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 6 SRTLYVGNLPGDIREREVEDLFYKYGP--IAHIDL---KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 6 ~~~l~v~nL~~~~t~~~L~~~F~~~G~--v~~v~~---~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
..++|||||-|.+|++||.+.+...|. +.++++ ...++++|||+|...+...+++.++.|....|+|+.-.|..+
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 457999999999999999999988874 444555 236899999999999999999999999999999986666443
No 157
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.90 E-value=1.7e-05 Score=66.81 Aligned_cols=65 Identities=29% Similarity=0.347 Sum_probs=55.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCC----------------CCCceEEEEEcChHHHHHHHHhcCCC
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP----------------RPPGYAFVEFEEARDAEDAIRGRDGY 68 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~----------------~~~g~afV~f~~~~~A~~a~~~l~g~ 68 (277)
++++|.+.|||.+-.-+.|.+||+.||.|+.|.|...+ ..+-+|||+|...+.|.+|.+.||..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 68999999999999999999999999999999994321 13568999999999999999977654
Q ss_pred c
Q 023798 69 D 69 (277)
Q Consensus 69 ~ 69 (277)
.
T Consensus 310 ~ 310 (484)
T KOG1855|consen 310 Q 310 (484)
T ss_pred h
Confidence 4
No 158
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.87 E-value=0.00014 Score=47.40 Aligned_cols=66 Identities=20% Similarity=0.282 Sum_probs=44.5
Q ss_pred ceEEccCCCCCCCHHH----HHHHHhhcC-ceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccceeeeEEEee
Q 023798 109 YRVLVTGLPSSASWQD----LKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (277)
Q Consensus 109 ~~l~v~~l~~~~~~~~----l~~~f~~~g-~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 183 (277)
..|+|.|||.+..... |++++..+| +|..+. ++.|.|.|.+.+.|..|.+.|+|..+.| ..|.+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~------~~tAilrF~~~~~A~RA~KRmegEdVfG----~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS------GGTAILRFPNQEFAERAQKRMEGEDVFG----NKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSS----S--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe------CCEEEEEeCCHHHHHHHHHhhccccccc----ceEEEE
Confidence 5789999999988655 566777787 565552 4589999999999999999999999999 445554
Q ss_pred c
Q 023798 184 E 184 (277)
Q Consensus 184 ~ 184 (277)
.
T Consensus 73 ~ 73 (90)
T PF11608_consen 73 F 73 (90)
T ss_dssp S
T ss_pred E
Confidence 3
No 159
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.82 E-value=0.00011 Score=65.54 Aligned_cols=76 Identities=22% Similarity=0.379 Sum_probs=64.5
Q ss_pred CCCC-eEEEcCCCCCCCHHHHHHHHhccCce-eEEEe--ecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEE
Q 023798 4 RASR-TLYVGNLPGDIREREVEDLFYKYGPI-AHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (277)
Q Consensus 4 ~~~~-~l~v~nL~~~~t~~~L~~~F~~~G~v-~~v~~--~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 79 (277)
.+-+ +|-|.|+|+.++-+||.++|.-|-.+ .+|.+ ..++...|-|.|.|++.++|..|...|++..|..+.|.+.+
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3444 88899999999999999999988654 23333 45788999999999999999999999999999999988754
No 160
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=9.1e-05 Score=64.01 Aligned_cols=61 Identities=23% Similarity=0.412 Sum_probs=55.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHh-ccCceeEEEeecC---CCCCceEEEEEcChHHHHHHHHh
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFY-KYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRG 64 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~-~~G~v~~v~~~~~---~~~~g~afV~f~~~~~A~~a~~~ 64 (277)
++.+|||||+||.-++.++|..+|. .||.|..+-|-.+ +-++|-|=|+|.+..+-.+||.+
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 5889999999999999999999999 8999999999555 46789999999999999999983
No 161
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.80 E-value=0.00013 Score=50.11 Aligned_cols=74 Identities=18% Similarity=0.266 Sum_probs=53.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEe-e---------cCCCCCceEEEEEcChHHHHHHHHhcCCCccCCce
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL-K---------IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~-~---------~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~ 74 (277)
..+.|.|-+.|+. ....|.+.|++||.|.+..- . .......+..|.|.++.+|.+||. .||..|.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 4567888899988 56788899999999987751 0 012335689999999999999999 8999999865
Q ss_pred E-EEEEc
Q 023798 75 L-RVELA 80 (277)
Q Consensus 75 l-~v~~a 80 (277)
+ -|.++
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 4 46665
No 162
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.80 E-value=0.00015 Score=52.74 Aligned_cols=74 Identities=20% Similarity=0.356 Sum_probs=53.3
Q ss_pred CCCCeEEEcCCCC------CCCH---HHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCce
Q 023798 4 RASRTLYVGNLPG------DIRE---REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (277)
Q Consensus 4 ~~~~~l~v~nL~~------~~t~---~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~ 74 (277)
.|.-||.|.=+.+ ...+ ++|.+.|..||+|.=+++. -+.-+|+|.+-+.|.+|+. |+|..+.|+.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv-----~~~mwVTF~dg~sALaals-~dg~~v~g~~ 98 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV-----GDTMWVTFRDGQSALAALS-LDGIQVNGRT 98 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE-----TTCEEEEESSCHHHHHHHH-GCCSEETTEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe-----CCeEEEEECccHHHHHHHc-cCCcEECCEE
Confidence 4566777755541 2222 2678889999999988887 3578999999999999999 9999999999
Q ss_pred EEEEEccCC
Q 023798 75 LRVELAHGG 83 (277)
Q Consensus 75 l~v~~a~~~ 83 (277)
|+|....+.
T Consensus 99 l~i~LKtpd 107 (146)
T PF08952_consen 99 LKIRLKTPD 107 (146)
T ss_dssp EEEEE----
T ss_pred EEEEeCCcc
Confidence 999887543
No 163
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=9.9e-05 Score=64.36 Aligned_cols=76 Identities=29% Similarity=0.430 Sum_probs=60.1
Q ss_pred CCeEEEcCCCCCC--CHH----HHHHHHhccCceeEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCccC-CceEE
Q 023798 6 SRTLYVGNLPGDI--RER----EVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLR 76 (277)
Q Consensus 6 ~~~l~v~nL~~~~--t~~----~L~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~-g~~l~ 76 (277)
...|+|.|+|.-- ..+ -|..+|+++|+|..+.++. .+..+||.|++|.+..+|+.|+..|||..|+ ...+.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 4678899998742 222 2567899999999999965 4668999999999999999999999999987 45566
Q ss_pred EEEcc
Q 023798 77 VELAH 81 (277)
Q Consensus 77 v~~a~ 81 (277)
|..-+
T Consensus 138 v~~f~ 142 (698)
T KOG2314|consen 138 VRLFK 142 (698)
T ss_pred eehhh
Confidence 65443
No 164
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.77 E-value=0.00016 Score=57.71 Aligned_cols=71 Identities=20% Similarity=0.230 Sum_probs=62.5
Q ss_pred CccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceeccceee
Q 023798 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (277)
Q Consensus 106 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (277)
.+...++|+|+...++.++++.+|+.||.|..+.+..+.. ++|+||+|.+.+.++.|+. |++..+.|....
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~ 173 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIE 173 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccce
Confidence 3557899999999999999999999999999888877754 4599999999999999999 999999996543
No 165
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.65 E-value=4.5e-06 Score=75.75 Aligned_cols=156 Identities=15% Similarity=0.123 Sum_probs=115.8
Q ss_pred CeEEEcCCCCCCCHH-HHHHHHhccCceeEEEeecC---CCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccC
Q 023798 7 RTLYVGNLPGDIRER-EVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~-~L~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~ 82 (277)
..+.+.|+.+..... .+...|..+|.|..|.++.- .+...++++++....+++.|.. ..+..+.++.+.|..+..
T Consensus 572 ~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ad~ 650 (881)
T KOG0128|consen 572 REKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLADA 650 (881)
T ss_pred hhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCCCc
Confidence 345677777765555 57888999999999999551 2333489999999999999988 788899998888877765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEE----ecCCCCEEEEEEcChhh
Q 023798 83 GRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVF----RDGSGTTGIVDYTNYDD 158 (277)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~----~~~~~~~afv~f~~~~~ 158 (277)
......... ........+++||.||+..+.+.+|...|..+|.+..+.+. .....|+||++|...++
T Consensus 651 ~~~~~~~kv---------s~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~ 721 (881)
T KOG0128|consen 651 EEKEENFKV---------SPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEH 721 (881)
T ss_pred hhhhhccCc---------CchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCc
Confidence 442111000 00112345789999999999999999999999987775554 33456799999999999
Q ss_pred HHHHHHHcCCceec
Q 023798 159 MKHAIKKLDDSEFR 172 (277)
Q Consensus 159 a~~a~~~l~g~~~~ 172 (277)
+.+|+...++..++
T Consensus 722 ~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 722 AGAAVAFRDSCFFG 735 (881)
T ss_pred hhhhhhhhhhhhhh
Confidence 99999976665554
No 166
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.52 E-value=0.00028 Score=55.75 Aligned_cols=100 Identities=27% Similarity=0.272 Sum_probs=80.4
Q ss_pred HHHHHHHhcCCCccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCcee
Q 023798 57 DAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVC 136 (277)
Q Consensus 57 ~A~~a~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~ 136 (277)
-|..|...|++....|+.|.|.|+.. ..|+|.||..-+.-+.|.+.|..||.|.
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~--------------------------a~l~V~nl~~~~sndll~~~f~~fg~~e 59 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH--------------------------AELYVVNLMQGASNDLLEQAFRRFGPIE 59 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc--------------------------ceEEEEecchhhhhHHHHHhhhhcCccc
Confidence 35667777999999999999999853 4899999999999999999999999999
Q ss_pred EEEEEecC---CCCEEEEEEcChhhHHHHHHHcCCceeccceeeeEEEe
Q 023798 137 FSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (277)
Q Consensus 137 ~~~~~~~~---~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 182 (277)
...+..|. .++-++|+|...-.|.+|+..+...-+.+.......-|
T Consensus 60 ~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~V 108 (275)
T KOG0115|consen 60 RAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGV 108 (275)
T ss_pred hheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCC
Confidence 87776663 34578999999999999999886665555433333333
No 167
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.51 E-value=0.00025 Score=42.71 Aligned_cols=52 Identities=17% Similarity=0.310 Sum_probs=40.9
Q ss_pred ceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHH
Q 023798 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAI 163 (277)
Q Consensus 109 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~ 163 (277)
+.|.|.|.++... +.+..+|..||+|..+.+... ..+.+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~--~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPES--TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCC--CcEEEEEECCHHHHHhhC
Confidence 3577888886655 445568889999999888732 348999999999999985
No 168
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.48 E-value=0.00032 Score=56.37 Aligned_cols=62 Identities=24% Similarity=0.311 Sum_probs=50.2
Q ss_pred HHHHHHHHhccCceeEEEeecC-C---CCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 20 EREVEDLFYKYGPIAHIDLKIP-P---RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 20 ~~~L~~~F~~~G~v~~v~~~~~-~---~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
++++.+..++||.|..|.|... + +-.--.||+|...++|.+|+-.|||.+|+|+.+...|-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 4567888899999999888432 1 223357999999999999999999999999998877753
No 169
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.41 E-value=0.00097 Score=43.45 Aligned_cols=55 Identities=16% Similarity=0.286 Sum_probs=42.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcC
Q 023798 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (277)
Q Consensus 6 ~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 66 (277)
....+|+ +|..+...||.+||+.||.|.--.|. -.-|||...+.+.|..|+..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~-----dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIN-----DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEEEC-----TTEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEEEc-----CCcEEEEeecHHHHHHHHHHhc
Confidence 3566776 99999999999999999998766664 2489999999999999998775
No 170
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.36 E-value=0.00011 Score=57.83 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=60.3
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC---------C-------EEEEEEcChhhHHHHHHHcCCce
Q 023798 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---------T-------TGIVDYTNYDDMKHAIKKLDDSE 170 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---------~-------~afv~f~~~~~a~~a~~~l~g~~ 170 (277)
..-.||+.+||+.+...-|+++|..||.|-.|.+...... + -|+|+|.+...|+.....||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3458999999999999999999999999999998765322 1 38999999999999999999999
Q ss_pred eccce
Q 023798 171 FRNAF 175 (277)
Q Consensus 171 ~~g~~ 175 (277)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99954
No 171
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.36 E-value=0.00032 Score=64.54 Aligned_cols=80 Identities=28% Similarity=0.432 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCC--ceEEEEEcc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g--~~l~v~~a~ 81 (277)
.+++.+|+++|.+++....|...|..||.|..|.+. +...||||.|.+...|+.|++.|-|..|+| +.|.|.++.
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~---hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR---HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeecc---cCCcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 478899999999999999999999999999998884 234599999999999999999999999974 579999987
Q ss_pred CCCCC
Q 023798 82 GGRGR 86 (277)
Q Consensus 82 ~~~~~ 86 (277)
.....
T Consensus 530 ~~~~~ 534 (975)
T KOG0112|consen 530 PPGAT 534 (975)
T ss_pred CCCCC
Confidence 55543
No 172
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.32 E-value=0.00061 Score=53.94 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=45.6
Q ss_pred HHHHHHHh-hcCceeEEEEEecC---CCCEEEEEEcChhhHHHHHHHcCCceeccceeeeEE
Q 023798 123 QDLKDHMR-RAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (277)
Q Consensus 123 ~~l~~~f~-~~g~i~~~~~~~~~---~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 180 (277)
++|...|. +||+|..+.|-.+- -.|.++|.|...++|+.|++.||+..+.|+.+...+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~ 144 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAEL 144 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeee
Confidence 45555555 89999988765552 235799999999999999999999999997765443
No 173
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.30 E-value=0.00073 Score=55.45 Aligned_cols=75 Identities=17% Similarity=0.252 Sum_probs=59.4
Q ss_pred CCCccceEEccCCCCCCCHHHH------HHHHhhcCceeEEEEEecCCC-----C--EEEEEEcChhhHHHHHHHcCCce
Q 023798 104 SRRSEYRVLVTGLPSSASWQDL------KDHMRRAGDVCFSQVFRDGSG-----T--TGIVDYTNYDDMKHAIKKLDDSE 170 (277)
Q Consensus 104 ~~~~~~~l~v~~l~~~~~~~~l------~~~f~~~g~i~~~~~~~~~~~-----~--~afv~f~~~~~a~~a~~~l~g~~ 170 (277)
......-+||-+|++.+..+++ .++|.+||+|..|.+-+.... + -.||.|...++|..++.+.+|..
T Consensus 110 RVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~ 189 (480)
T COG5175 110 RVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL 189 (480)
T ss_pred eeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccc
Confidence 3345678899999998876652 679999999999888654311 1 24999999999999999999999
Q ss_pred eccceeee
Q 023798 171 FRNAFSRA 178 (277)
Q Consensus 171 ~~g~~~~~ 178 (277)
++|+.++.
T Consensus 190 ~DGr~lka 197 (480)
T COG5175 190 LDGRVLKA 197 (480)
T ss_pred ccCceEee
Confidence 99976554
No 174
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.09 E-value=0.0023 Score=43.94 Aligned_cols=66 Identities=20% Similarity=0.217 Sum_probs=47.7
Q ss_pred cceEEccCCCCCCCHHHHHHHHhhcCceeEEE-----------EEecCCCCEEEEEEcChhhHHHHHHHcCCceeccce
Q 023798 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQ-----------VFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (277)
Q Consensus 108 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~-----------~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (277)
..-|.|-|.|+. ....|.++|++||+|.... ......+.+..|.|.+..+|++|+. .||..+.|..
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 456888888887 6678889999999997764 0112233489999999999999998 8999888753
No 175
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.0018 Score=56.82 Aligned_cols=66 Identities=24% Similarity=0.331 Sum_probs=54.6
Q ss_pred cceEEccCCCCCCC------HHHHHHHHhhcCceeEEEEEecCCC---CEEEEEEcChhhHHHHHHHcCCceecc
Q 023798 108 EYRVLVTGLPSSAS------WQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (277)
Q Consensus 108 ~~~l~v~~l~~~~~------~~~l~~~f~~~g~i~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~g 173 (277)
...|+|.|+|---. +..|..+|+++|++....++.++.+ ||.|++|++..+|+.|++.|||+.++-
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecc
Confidence 45788888875332 3456789999999999999877655 499999999999999999999999875
No 176
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.08 E-value=0.0052 Score=44.33 Aligned_cols=73 Identities=19% Similarity=0.252 Sum_probs=57.3
Q ss_pred CCCCeEEEcCCCCCCCH----HHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEE
Q 023798 4 RASRTLYVGNLPGDIRE----REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~----~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 79 (277)
-|--||.|.-|..++.. ..|...++.||+|..|.+- .+..|.|.|.+..+|-.|+.+++. ...|.-+.+.|
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c----GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC----GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec----CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 46678889888777543 2356667799999999873 356899999999999999998866 66788888888
Q ss_pred cc
Q 023798 80 AH 81 (277)
Q Consensus 80 a~ 81 (277)
-.
T Consensus 159 qq 160 (166)
T PF15023_consen 159 QQ 160 (166)
T ss_pred cc
Confidence 64
No 177
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=97.03 E-value=0.006 Score=42.73 Aligned_cols=68 Identities=15% Similarity=0.123 Sum_probs=51.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccC-ceeEEEeecCCC-CCceEEEEEcChHHHHHHHHhcCCCccC
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKIPPR-PPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G-~v~~v~~~~~~~-~~g~afV~f~~~~~A~~a~~~l~g~~~~ 71 (277)
..+..+.+...|+.++.++|..+.+.+- .|..++|..++. ++-.+++.|.++++|...+..+||+.|.
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3455555656666677777776666654 477788877765 4557889999999999999999999986
No 178
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.95 E-value=0.0015 Score=50.04 Aligned_cols=82 Identities=18% Similarity=0.167 Sum_probs=52.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhc-cCce---eEEEeec-----CCCCCceEEEEEcChHHHHHHHHhcCCCccCC--
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYK-YGPI---AHIDLKI-----PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG-- 72 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~-~G~v---~~v~~~~-----~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g-- 72 (277)
.....|.|.+||+++|++++.+.+.. ++.. ..+.-.. ......-|||.|.+.+++......++|..|.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 35678999999999999999997776 6665 3333111 11224579999999999999999999987742
Q ss_pred ---ceEEEEEccCCCC
Q 023798 73 ---HRLRVELAHGGRG 85 (277)
Q Consensus 73 ---~~l~v~~a~~~~~ 85 (277)
-...|++|.....
T Consensus 85 g~~~~~~VE~Apyqk~ 100 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQKV 100 (176)
T ss_dssp S-EEEEEEEE-SS---
T ss_pred CCCcceeEEEcchhcc
Confidence 2567888876443
No 179
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.92 E-value=0.0035 Score=50.60 Aligned_cols=57 Identities=18% Similarity=0.210 Sum_probs=49.1
Q ss_pred HHHHHHHHhhcCceeEEEEEecCCC-----CEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 122 WQDLKDHMRRAGDVCFSQVFRDGSG-----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 122 ~~~l~~~f~~~g~i~~~~~~~~~~~-----~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
+.++++.+.+||+|..|.|+..+.. .-.||+|+..++|.+|+-.|||..++|+.+..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A 361 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSA 361 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeh
Confidence 4678899999999999999887543 26899999999999999999999999976543
No 180
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.88 E-value=0.00096 Score=56.51 Aligned_cols=66 Identities=14% Similarity=0.289 Sum_probs=55.8
Q ss_pred CCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEec---CC--------------CCEEEEEEcChhhHHHHHHHc
Q 023798 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD---GS--------------GTTGIVDYTNYDDMKHAIKKL 166 (277)
Q Consensus 104 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~--------------~~~afv~f~~~~~a~~a~~~l 166 (277)
...+..+|.+.|||.+-.-+.|.++|..+|.|..|.|.+. +. ..+|+|+|+..+.|.+|.+.|
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3356789999999999999999999999999999999766 21 126999999999999999987
Q ss_pred CCc
Q 023798 167 DDS 169 (277)
Q Consensus 167 ~g~ 169 (277)
+..
T Consensus 307 ~~e 309 (484)
T KOG1855|consen 307 NPE 309 (484)
T ss_pred chh
Confidence 543
No 181
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=96.84 E-value=0.0096 Score=38.63 Aligned_cols=66 Identities=27% Similarity=0.498 Sum_probs=40.8
Q ss_pred eEEEcCCC--CCCCHHHHHHHHhccC-----ceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 8 TLYVGNLP--GDIREREVEDLFYKYG-----PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 8 ~l~v~nL~--~~~t~~~L~~~F~~~G-----~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
++|| |+- ..++..+|..++...+ .|-.|.+. ..|+||+... +.|..++..|++..+.|+.|.|+.|
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~-----~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF-----DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE------SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred EEEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe-----eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4555 443 3588999999998764 46677775 4599999987 6899999999999999999999875
No 182
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.78 E-value=0.0009 Score=59.75 Aligned_cols=121 Identities=16% Similarity=0.148 Sum_probs=81.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCCC
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~~ 84 (277)
+.-+|||+||...+..+-++.+...||-|..+.... |||++|..+..+..|+..|+-..++|+.+.+.......
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~q~~ 112 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDEQTI 112 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh------hcccchhhHHHHHHHHHHhcccCCCcchhhccchhhhh
Confidence 567999999999999999999999999998887752 99999999999999999999999999988877753322
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhc
Q 023798 85 GRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRA 132 (277)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~ 132 (277)
..+...............++ ......+|.++|....+......+.-.
T Consensus 113 ~n~~k~~~~~~~~~~~f~p~-~srr~e~i~~k~~~l~~~~~~~~~~is 159 (668)
T KOG2253|consen 113 ENADKEKSIANKESHKFVPS-SSRRQESIQNKPLSLDEQIHKKSLQIS 159 (668)
T ss_pred cCccccccchhhhhcccCCc-hhHHHHHhhccccchhHHHHHHHHhcc
Confidence 22221111111000111111 113445566666666555555555433
No 183
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.74 E-value=0.0038 Score=51.87 Aligned_cols=71 Identities=20% Similarity=0.275 Sum_probs=59.6
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeE--------EEEEecC----CCCEEEEEEcChhhHHHHHHHcCCceec
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~--------~~~~~~~----~~~~afv~f~~~~~a~~a~~~l~g~~~~ 172 (277)
.....+|||.+||..+++.+|.++|.++|.|.. |++.++. .++-|.|.|.+...|+.|+.-++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 446679999999999999999999999998753 4454443 3458999999999999999999999998
Q ss_pred cce
Q 023798 173 NAF 175 (277)
Q Consensus 173 g~~ 175 (277)
+..
T Consensus 143 gn~ 145 (351)
T KOG1995|consen 143 GNT 145 (351)
T ss_pred CCC
Confidence 843
No 184
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.53 E-value=0.0083 Score=52.73 Aligned_cols=98 Identities=14% Similarity=0.198 Sum_probs=69.8
Q ss_pred hHHHHHHHHhcCCCccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhh--c
Q 023798 55 ARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRR--A 132 (277)
Q Consensus 55 ~~~A~~a~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~--~ 132 (277)
.+-..++|...-+.+++.+-++|.... .-+.|++..||..+..++++.+|.. +
T Consensus 147 vdLI~Evlresp~VqvDekgekVrp~~-------------------------kRcIvilREIpettp~e~Vk~lf~~enc 201 (684)
T KOG2591|consen 147 VDLIVEVLRESPNVQVDEKGEKVRPNH-------------------------KRCIVILREIPETTPIEVVKALFKGENC 201 (684)
T ss_pred hHHHHHHHhcCCCceeccCccccccCc-------------------------ceeEEEEeecCCCChHHHHHHHhccCCC
Confidence 344455666666666766666654432 3467888999999999999999974 6
Q ss_pred CceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCC--ceeccceeeeEE
Q 023798 133 GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD--SEFRNAFSRAYV 180 (277)
Q Consensus 133 g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g--~~~~g~~~~~~i 180 (277)
-+++.|.+..+. -.||+|++..||+.|.+.|.. ++|.|+.+-++|
T Consensus 202 Pk~iscefa~N~---nWyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 202 PKVISCEFAHND---NWYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred CCceeeeeeecC---ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 788888887765 469999999999999987643 244454433333
No 185
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.49 E-value=0.025 Score=35.02 Aligned_cols=54 Identities=17% Similarity=0.354 Sum_probs=41.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcc----CceeEEEeecCCCCCceEEEEEcChHHHHHHHHhc
Q 023798 6 SRTLYVGNLPGDIREREVEDLFYKY----GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (277)
Q Consensus 6 ~~~l~v~nL~~~~t~~~L~~~F~~~----G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l 65 (277)
...|+|.++ -+++.++|+.+|..| ++. .|..+.+ .-|-|.|.+.+.|..||..|
T Consensus 5 peavhirGv-d~lsT~dI~~y~~~y~~~~~~~-~IEWIdD----tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGV-DELSTDDIKAYFSEYFDEEGPF-RIEWIDD----TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcC-CCCCHHHHHHHHHHhcccCCCc-eEEEecC----CcEEEEECCHHHHHHHHHcC
Confidence 357899998 458889999999988 543 3443322 26789999999999999864
No 186
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.44 E-value=0.021 Score=49.00 Aligned_cols=67 Identities=16% Similarity=0.320 Sum_probs=58.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcc-CceeEEEeecCCCCCc-eEEEEEcChHHHHHHHHhcCCCccC
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKY-GPIAHIDLKIPPRPPG-YAFVEFEEARDAEDAIRGRDGYDFD 71 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~-G~v~~v~~~~~~~~~g-~afV~f~~~~~A~~a~~~l~g~~~~ 71 (277)
+++.|+|-.+|..++.-||..|...+ -.|.+|++..++.+.. .++|.|.+.++|...+..+||..|.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 37899999999999999999998865 4688899987775544 5889999999999999999999986
No 187
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.36 E-value=0.035 Score=34.37 Aligned_cols=54 Identities=17% Similarity=0.135 Sum_probs=43.7
Q ss_pred ceEEccCCCCCCCHHHHHHHHhhc---CceeEEEEEecCCCCEEEEEEcChhhHHHHHHHc
Q 023798 109 YRVLVTGLPSSASWQDLKDHMRRA---GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL 166 (277)
Q Consensus 109 ~~l~v~~l~~~~~~~~l~~~f~~~---g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l 166 (277)
.+|+|.|+. +++.++|+.+|..| .....+..+.|. .|-|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 588999985 47889999999998 234567777665 6899999999999999764
No 188
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.25 E-value=0.022 Score=43.95 Aligned_cols=63 Identities=29% Similarity=0.372 Sum_probs=46.4
Q ss_pred CHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcC--CCccCCceEEEEEccCCC
Q 023798 19 REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD--GYDFDGHRLRVELAHGGR 84 (277)
Q Consensus 19 t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~--g~~~~g~~l~v~~a~~~~ 84 (277)
..+.|+++|..|+.+..+... .+-+-..|.|.+.++|..|...|+ +..+.|..+.|.++....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L---~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPL---KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEE---TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEc---CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 457899999999998887775 234568999999999999999999 999999999999985433
No 189
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.08 E-value=0.023 Score=37.17 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=41.6
Q ss_pred ceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCC
Q 023798 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD 168 (277)
Q Consensus 109 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g 168 (277)
...+|. .|.++...+|.++|+.||.|.--.+-.. .|||...+.+.|..++..+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~dT----SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWINDT----SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEECTT----EEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcCC----cEEEEeecHHHHHHHHHHhcc
Confidence 344444 9999999999999999999876666333 899999999999999988764
No 190
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.90 E-value=0.047 Score=39.98 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=43.7
Q ss_pred HHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccceeeeEE
Q 023798 123 QDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (277)
Q Consensus 123 ~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 180 (277)
.+|-+.|..||++.-+.+..+ .-+|+|.+-+.|.+|+. ++|.+++|+..+...
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaals-~dg~~v~g~~l~i~L 103 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRL 103 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE
T ss_pred HHHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHHc-cCCcEECCEEEEEEe
Confidence 367888999999998888776 56999999999999998 999999996655443
No 191
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.88 E-value=0.011 Score=52.06 Aligned_cols=71 Identities=15% Similarity=0.253 Sum_probs=56.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHh--ccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCC--CccCCceEEEEE
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFY--KYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG--YDFDGHRLRVEL 79 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~--~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g--~~~~g~~l~v~~ 79 (277)
.-|.|+|.-||..+-.++|+.||. .|-.+++|.+... .-=||+|++..||+.|+..|.. ..|.|++|...+
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N----~nWyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN----DNWYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec----CceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 457899999999999999999998 4788999998421 2459999999999999887653 446677665433
No 192
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=95.86 E-value=0.015 Score=47.92 Aligned_cols=22 Identities=18% Similarity=0.104 Sum_probs=11.9
Q ss_pred CceEEEEEcChHHHHHHHHhcCC
Q 023798 45 PGYAFVEFEEARDAEDAIRGRDG 67 (277)
Q Consensus 45 ~g~afV~f~~~~~A~~a~~~l~g 67 (277)
+--.||-|.-..-|.+++. |-+
T Consensus 173 RT~v~vry~pe~iACaciy-LaA 194 (367)
T KOG0835|consen 173 RTDVFVRYSPESIACACIY-LAA 194 (367)
T ss_pred ccceeeecCHHHHHHHHHH-HHH
Confidence 3456777776555544444 443
No 193
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.84 E-value=0.006 Score=52.52 Aligned_cols=74 Identities=16% Similarity=0.224 Sum_probs=61.3
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccC
Q 023798 5 ASRTLYVGNLPGD-IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (277)
Q Consensus 5 ~~~~l~v~nL~~~-~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~ 82 (277)
.++.|-+.-+|.. -+-.+|...|.+||+|..|.+-.. .-.|.|+|.+..+|-.|.. .++..|+++.|+|.|...
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~---~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS---SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc---hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 4556666666665 467889999999999999998543 3479999999999988888 899999999999999875
No 194
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.73 E-value=0.013 Score=46.51 Aligned_cols=75 Identities=29% Similarity=0.413 Sum_probs=59.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCcc----CCceEEEEEc
Q 023798 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDF----DGHRLRVELA 80 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~----~g~~l~v~~a 80 (277)
..|||.||+.-++.+.|.+-|..||+|..-.+.. .++..+-++|+|...-.|.+|+..++..-| .+.+.-|..+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 6899999999999999999999999987765533 467778899999999999999987743333 3555555544
Q ss_pred c
Q 023798 81 H 81 (277)
Q Consensus 81 ~ 81 (277)
.
T Consensus 112 e 112 (275)
T KOG0115|consen 112 E 112 (275)
T ss_pred h
Confidence 3
No 195
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.54 E-value=0.053 Score=44.24 Aligned_cols=69 Identities=17% Similarity=0.259 Sum_probs=51.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCce-EEEEEcc
Q 023798 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR-LRVELAH 81 (277)
Q Consensus 8 ~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~-l~v~~a~ 81 (277)
=|-|-++|+... .-|..+|+.||+|.+.... .+-.+-+|.|.+.-+|++||. .||+.|+|-. |-|..|.
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~---~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP---SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhCeeeeeecC---CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecC
Confidence 355557766544 4577899999999877654 334588999999999999999 8999998764 3455544
No 196
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=95.36 E-value=0.029 Score=46.32 Aligned_cols=11 Identities=0% Similarity=0.190 Sum_probs=5.2
Q ss_pred CCCHHHHHHHH
Q 023798 119 SASWQDLKDHM 129 (277)
Q Consensus 119 ~~~~~~l~~~f 129 (277)
.+++++|.++.
T Consensus 212 d~~k~eid~ic 222 (367)
T KOG0835|consen 212 DTTKREIDEIC 222 (367)
T ss_pred CCcHHHHHHHH
Confidence 34455554443
No 197
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.31 E-value=0.0079 Score=49.75 Aligned_cols=75 Identities=31% Similarity=0.511 Sum_probs=57.8
Q ss_pred CeEEEcCCCCCCCHHHHH---HHHhccCceeEEEeecCC------CCCceEEEEEcChHHHHHHHHhcCCCccCCceEEE
Q 023798 7 RTLYVGNLPGDIREREVE---DLFYKYGPIAHIDLKIPP------RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~L~---~~F~~~G~v~~v~~~~~~------~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 77 (277)
+-+||-+|+..+..+.+. +.|.+||.|..|.+..+. ....-+||+|...++|..||...+|..++|+.|++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 457788888876555553 478899999999885432 12234899999999999999999999999998776
Q ss_pred EEcc
Q 023798 78 ELAH 81 (277)
Q Consensus 78 ~~a~ 81 (277)
.+..
T Consensus 158 ~~gt 161 (327)
T KOG2068|consen 158 SLGT 161 (327)
T ss_pred hhCC
Confidence 6653
No 198
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.93 E-value=0.027 Score=46.80 Aligned_cols=68 Identities=15% Similarity=0.186 Sum_probs=56.5
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhhcC--ceeEEEEEec----CCCCEEEEEEcChhhHHHHHHHcCCceeccc
Q 023798 107 SEYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRD----GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l~~~f~~~g--~i~~~~~~~~----~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~ 174 (277)
....+||+||.|.+|.++|.+.+...| .+..++++.+ ..+|||+|...+....++.++.|-.+.+.|.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ 152 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQ 152 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCC
Confidence 457899999999999999999888777 4555556555 3456999999999999999999999999884
No 199
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=94.91 E-value=0.011 Score=48.63 Aligned_cols=10 Identities=0% Similarity=0.391 Sum_probs=4.7
Q ss_pred HHHHHHHhhc
Q 023798 123 QDLKDHMRRA 132 (277)
Q Consensus 123 ~~l~~~f~~~ 132 (277)
.+|.+-|.++
T Consensus 227 kqId~~ie~r 236 (453)
T KOG2888|consen 227 KQIDEKIEER 236 (453)
T ss_pred HHHHHHHHhc
Confidence 4454555444
No 200
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.35 E-value=0.028 Score=49.96 Aligned_cols=67 Identities=13% Similarity=0.201 Sum_probs=54.1
Q ss_pred CCCccceEEccCCCCCCCHHHHHHHHhh-cCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceec
Q 023798 104 SRRSEYRVLVTGLPSSASWQDLKDHMRR-AGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (277)
Q Consensus 104 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~ 172 (277)
.....+.|+|.||--..|.-+|++++.. .|.|...+|-+ -+..|||.|.+.++|......|||..+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk--IKShCyV~yss~eEA~atr~AlhnV~WP 507 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK--IKSHCYVSYSSVEEAAATREALHNVQWP 507 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH--hhcceeEecccHHHHHHHHHHHhccccC
Confidence 3446789999999999999999999995 45565554422 2338999999999999999999998764
No 201
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.24 E-value=0.1 Score=40.05 Aligned_cols=69 Identities=13% Similarity=0.233 Sum_probs=45.9
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhh-cCceeEEEEEe---cCC----C--CEEEEEEcChhhHHHHHHHcCCceeccce
Q 023798 107 SEYRVLVTGLPSSASWQDLKDHMRR-AGDVCFSQVFR---DGS----G--TTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l~~~f~~-~g~i~~~~~~~---~~~----~--~~afv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (277)
...+|.|.+||+.+|++++.+.+.. ++.......+. ... . .-|||.|.+.+++..-.+.++|..+-+..
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 3469999999999999999997776 66552222222 211 1 16999999999999999999998876544
No 202
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.23 E-value=0.034 Score=51.49 Aligned_cols=72 Identities=21% Similarity=0.209 Sum_probs=58.8
Q ss_pred EEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccC--CceEEEEEccCCC
Q 023798 10 YVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD--GHRLRVELAHGGR 84 (277)
Q Consensus 10 ~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~--g~~l~v~~a~~~~ 84 (277)
++-|.+-+++..-|-.+|..||.|.+.+...+ -..|.|+|...+.|..|+.+|+|+.+. |-+.+|-+|+...
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~---~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRD---LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheeccc---ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 33444556788889999999999999887532 458999999999999999999999864 8889999987443
No 203
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=94.08 E-value=1.8 Score=35.55 Aligned_cols=163 Identities=11% Similarity=0.142 Sum_probs=95.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCC----------CCCceEEEEEcChHHHHHHHH----hcC--CCc
Q 023798 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP----------RPPGYAFVEFEEARDAEDAIR----GRD--GYD 69 (277)
Q Consensus 6 ~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~----------~~~g~afV~f~~~~~A~~a~~----~l~--g~~ 69 (277)
++.|.+.||..+++--.+...|-+||+|..|++.... .....+.+-|-+.+.|...+. .|+ ...
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 5778889999999999999999999999999995432 334678999999998876543 233 234
Q ss_pred cCCceEEEEEccCCCCCCCCC-C-CCCC---C-CCCCCC-CCCCccceEEccCCCCCC-CHHHHHH---HHhhcCc----
Q 023798 70 FDGHRLRVELAHGGRGRSSSD-R-HSSH---S-SGRGRG-VSRRSEYRVLVTGLPSSA-SWQDLKD---HMRRAGD---- 134 (277)
Q Consensus 70 ~~g~~l~v~~a~~~~~~~~~~-~-~~~~---~-~~~~~~-~~~~~~~~l~v~~l~~~~-~~~~l~~---~f~~~g~---- 134 (277)
+.-..|.+.|..-........ . .... . ..-... ........|.|.= ...+ .++-+.+ ++..-+.
T Consensus 95 L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF-~~~~~~~dl~~~kL~fL~~~~n~RYV 173 (309)
T PF10567_consen 95 LKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEF-KDPVDKDDLIEKKLPFLKNSNNKRYV 173 (309)
T ss_pred cCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEe-cCccchhHHHHHhhhhhccCCCceEE
Confidence 566777777765322211110 0 0000 0 000000 1111222333332 2333 2222232 2222332
Q ss_pred eeEEEEEecC------CCCEEEEEEcChhhHHHHHHHcCCc
Q 023798 135 VCFSQVFRDG------SGTTGIVDYTNYDDMKHAIKKLDDS 169 (277)
Q Consensus 135 i~~~~~~~~~------~~~~afv~f~~~~~a~~a~~~l~g~ 169 (277)
++.+.++... +..||.+.|-+..-|.+.++.+...
T Consensus 174 lEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~ 214 (309)
T PF10567_consen 174 LESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSN 214 (309)
T ss_pred EEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhc
Confidence 5556665442 2349999999999999999887633
No 204
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.73 E-value=0.8 Score=32.13 Aligned_cols=65 Identities=11% Similarity=0.125 Sum_probs=47.7
Q ss_pred ceEEccCCCCCCCHHHHHHHHhhcC-ceeEEEEEecCCC--CEEEEEEcChhhHHHHHHHcCCceecc
Q 023798 109 YRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGSG--TTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (277)
Q Consensus 109 ~~l~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~--~~afv~f~~~~~a~~a~~~l~g~~~~g 173 (277)
..+.+...|..++.++|..+.+.+- .|..+.+.++... -.+.+.|.+..+|.+-...+||+.++.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3444444555566667766666555 5667888887543 379999999999999999999999875
No 205
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.53 E-value=0.45 Score=42.53 Aligned_cols=80 Identities=21% Similarity=0.370 Sum_probs=63.1
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhcc----CceeEEEeecC-------------CC---------------------
Q 023798 3 SRASRTLYVGNLPGD-IREREVEDLFYKY----GPIAHIDLKIP-------------PR--------------------- 43 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~-~t~~~L~~~F~~~----G~v~~v~~~~~-------------~~--------------------- 43 (277)
+.+++.|-|.||.|. +...+|.-+|..| |.|..|.|..+ |.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 357889999999997 8999999999977 57888888321 11
Q ss_pred ----------------CCceEEEEEcChHHHHHHHHhcCCCccC--CceEEEEEccC
Q 023798 44 ----------------PPGYAFVEFEEARDAEDAIRGRDGYDFD--GHRLRVELAHG 82 (277)
Q Consensus 44 ----------------~~g~afV~f~~~~~A~~a~~~l~g~~~~--g~~l~v~~a~~ 82 (277)
..-||.|+|.+++.|.+.+..++|..|. +..|-+.|-..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPD 307 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPD 307 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCC
Confidence 0137899999999999999999999997 55666666543
No 206
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=93.31 E-value=0.0032 Score=53.39 Aligned_cols=77 Identities=17% Similarity=0.339 Sum_probs=64.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccC
Q 023798 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (277)
Q Consensus 6 ~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~ 82 (277)
++.+.|.|||+...++.|-.|+..||.|..|....+.......-|+|...+.+..||..|||..+....++|.|-..
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 56788999999999999999999999999988744333233455789999999999999999999999998888653
No 207
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.21 E-value=0.39 Score=30.24 Aligned_cols=55 Identities=22% Similarity=0.427 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEE
Q 023798 17 DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (277)
Q Consensus 17 ~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 77 (277)
.++.++|+..+..|+- ..|.... .|| ||.|.+.++|+.++...+|..+.+-.|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~d~----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRDDR----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEecC----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4788999999999974 3444432 344 89999999999999999999888776654
No 208
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.38 E-value=0.65 Score=33.82 Aligned_cols=63 Identities=8% Similarity=0.133 Sum_probs=46.0
Q ss_pred CCccceEEccCCCCCC----CHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCce
Q 023798 105 RRSEYRVLVTGLPSSA----SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSE 170 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~----~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~ 170 (277)
.++..+|.|.=|..++ +...+-+.++.||.|..+...... .|.|.|++...|-.|+..+....
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq---savVvF~d~~SAC~Av~Af~s~~ 149 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ---SAVVVFKDITSACKAVSAFQSRA 149 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc---eEEEEehhhHHHHHHHHhhcCCC
Confidence 3455677776554443 344556677899999998775433 79999999999999999887643
No 209
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=92.29 E-value=0.17 Score=37.68 Aligned_cols=120 Identities=18% Similarity=0.152 Sum_probs=75.5
Q ss_pred EEEcCC-C-CCCCHHHHHHHHhc-cCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCCCC
Q 023798 9 LYVGNL-P-GDIREREVEDLFYK-YGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRG 85 (277)
Q Consensus 9 l~v~nL-~-~~~t~~~L~~~F~~-~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~~~ 85 (277)
..||.+ . ...+-..|.+.+.. .+....+.+.. ...++..+.|.+.+++..++. .....+.|..+.++...+...
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~--l~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~ 94 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRD--LGDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFN 94 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEE--eCCCeEEEEEEeccceeEEEe-cccccccccchhhhhhccccc
Confidence 344444 2 34667777776664 23333344421 125799999999999999988 455567777777766543221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccceEEccCCCCC-CCHHHHHHHHhhcCceeEEEEEecC
Q 023798 86 RSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDG 144 (277)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~ 144 (277)
.... .......=|.|.|||.. .+++.+..+.+..|++..++.....
T Consensus 95 ~~~~-------------~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~ 141 (153)
T PF14111_consen 95 PSEV-------------KFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLK 141 (153)
T ss_pred cccc-------------ceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCC
Confidence 1100 00112234667899987 5888899999999999988776553
No 210
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.84 E-value=0.72 Score=37.89 Aligned_cols=63 Identities=16% Similarity=0.218 Sum_probs=49.0
Q ss_pred cceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccc
Q 023798 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (277)
Q Consensus 108 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~ 174 (277)
+.=|.|.+.++.. -..|..+|.+||+|...... .++.+-+|.|.+.-+|++|+. .+|+.|+|.
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALs-kng~ii~g~ 259 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALS-KNGTIIDGD 259 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhh-hcCeeeccc
Confidence 3445566666543 35678899999999876655 455699999999999999999 788888874
No 211
>KOG3263 consensus Nucleic acid binding protein [General function prediction only]
Probab=91.70 E-value=0.041 Score=40.83 Aligned_cols=12 Identities=33% Similarity=0.409 Sum_probs=7.0
Q ss_pred CCCCccccchhh
Q 023798 254 KPRSLSRYASLL 265 (277)
Q Consensus 254 r~rs~~r~~~~~ 265 (277)
+.+|+|+.++.+
T Consensus 83 r~rs~Sp~ap~r 94 (196)
T KOG3263|consen 83 RRRSVSPFAPER 94 (196)
T ss_pred hhcccCCCCccc
Confidence 456666666553
No 212
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.45 E-value=0.11 Score=43.28 Aligned_cols=69 Identities=19% Similarity=0.224 Sum_probs=54.8
Q ss_pred ccceEEccCCCCCCCHHHH---HHHHhhcCceeEEEEEecCC-----C--CEEEEEEcChhhHHHHHHHcCCceeccce
Q 023798 107 SEYRVLVTGLPSSASWQDL---KDHMRRAGDVCFSQVFRDGS-----G--TTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l---~~~f~~~g~i~~~~~~~~~~-----~--~~afv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (277)
...-+||-+|+..+..+.+ .+.|.+||.|..+.+..+.. . -.++|+|+..++|..|+...+|..++|+.
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 3456788888887755544 35888999999998887652 1 16899999999999999999999998854
No 213
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=91.33 E-value=0.17 Score=33.81 Aligned_cols=73 Identities=23% Similarity=0.347 Sum_probs=45.5
Q ss_pred EEEEEcChHHHHHHHHh-cCCCccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHH
Q 023798 48 AFVEFEEARDAEDAIRG-RDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLK 126 (277)
Q Consensus 48 afV~f~~~~~A~~a~~~-l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~ 126 (277)
|+|+|.++.-|+..+.. -+...+++..+.|............- .-.......+|.|.|||....+++|+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~----------qv~~~vs~rtVlvsgip~~l~ee~l~ 70 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKF----------QVFSGVSKRTVLVSGIPDVLDEEELR 70 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEE----------EEEEcccCCEEEEeCCCCCCChhhhe
Confidence 68999999999998883 22233556666665543221110000 00112345689999999999999988
Q ss_pred HHHh
Q 023798 127 DHMR 130 (277)
Q Consensus 127 ~~f~ 130 (277)
+.+.
T Consensus 71 D~Le 74 (88)
T PF07292_consen 71 DKLE 74 (88)
T ss_pred eeEE
Confidence 7653
No 214
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.16 E-value=0.19 Score=43.67 Aligned_cols=70 Identities=16% Similarity=0.227 Sum_probs=54.0
Q ss_pred ccceEEccCCCCCC-CHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccceeeeE
Q 023798 107 SEYRVLVTGLPSSA-SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (277)
Q Consensus 107 ~~~~l~v~~l~~~~-~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (277)
..+.|.+...|... +-++|..+|.+||+|..|.+-... -.|.|+|.+..+|-+|.. .++..|+|+.++..
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~--~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~ 441 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS--LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLF 441 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch--hhheeeeeccccccchhc-cccceecCceeEEE
Confidence 44556666666665 678999999999999999886662 268999999999977766 78888888554443
No 215
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.06 E-value=1 Score=39.16 Aligned_cols=66 Identities=12% Similarity=0.220 Sum_probs=57.6
Q ss_pred cceEEccCCCCCCCHHHHHHHHhhcC-ceeEEEEEecCCC--CEEEEEEcChhhHHHHHHHcCCceecc
Q 023798 108 EYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGSG--TTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (277)
Q Consensus 108 ~~~l~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~--~~afv~f~~~~~a~~a~~~l~g~~~~g 173 (277)
+..|.|-.+|..++-.+|..++..+- .|..+.++.+... -.+.|.|.+..+|....+.+||+.++.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 67899999999999999999998765 6778888887443 379999999999999999999999875
No 216
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=88.27 E-value=2.5 Score=32.70 Aligned_cols=57 Identities=12% Similarity=0.114 Sum_probs=43.2
Q ss_pred CHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcC--CceeccceeeeE
Q 023798 121 SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD--DSEFRNAFSRAY 179 (277)
Q Consensus 121 ~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~--g~~~~g~~~~~~ 179 (277)
....|+++|..++.+.....+..-. -..|.|.+.+.|..|...|+ +..+.|...+.+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFr--Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~y 66 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFR--RIRVVFESPESAQRARQLLHWDGTSFNGKRLRVY 66 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTT--EEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCC--EEEEEeCCHHHHHHHHHHhcccccccCCCceEEE
Confidence 5688999999999888777666533 57899999999999999999 899998665443
No 217
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=87.56 E-value=4.5 Score=30.83 Aligned_cols=80 Identities=23% Similarity=0.324 Sum_probs=55.8
Q ss_pred CCCeEEEcCCCCCC-CHHH----HHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCc-eEEEE
Q 023798 5 ASRTLYVGNLPGDI-RERE----VEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH-RLRVE 78 (277)
Q Consensus 5 ~~~~l~v~nL~~~~-t~~~----L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~-~l~v~ 78 (277)
=.+++++.+|+..+ ++.+ ...+|.+|-+.....+. .+.+..-|.|.+++.|..|.-.+++..|.|+ .+++.
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l---rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL---RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH---HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 34567788887763 2222 34566666555444443 3355677889999999999999999999988 88998
Q ss_pred EccCCCCCC
Q 023798 79 LAHGGRGRS 87 (277)
Q Consensus 79 ~a~~~~~~~ 87 (277)
++.......
T Consensus 86 faQ~~~~~~ 94 (193)
T KOG4019|consen 86 FAQPGHPES 94 (193)
T ss_pred EccCCCccc
Confidence 887554433
No 218
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=86.85 E-value=5.5 Score=25.59 Aligned_cols=56 Identities=9% Similarity=0.208 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHhhcCc-----eeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 118 SSASWQDLKDHMRRAGD-----VCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 118 ~~~~~~~l~~~f~~~g~-----i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
..++..+|..++...+. |-.+.+... |+||+-.. +.|..++..|++..+.|+.+..
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~----~S~vev~~-~~a~~v~~~l~~~~~~gk~v~v 71 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN----FSFVEVPE-EVAEKVLEALNGKKIKGKKVRV 71 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE-T-T-HHHHHHHHTT--SSS----E
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee----EEEEEECH-HHHHHHHHHhcCCCCCCeeEEE
Confidence 45688889998887654 556777665 88888665 4788999999999999965543
No 219
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=85.61 E-value=0.73 Score=41.95 Aligned_cols=67 Identities=13% Similarity=0.044 Sum_probs=58.1
Q ss_pred CCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccce
Q 023798 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (277)
Q Consensus 104 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (277)
+.++..++||+|+-..+..+-++.+...+|-|..+.... |||.+|....-+..|+..++...++|..
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~k 102 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQK 102 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcch
Confidence 345668999999999999999999999999988776655 8999999999999999998888887744
No 220
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.46 E-value=1.8 Score=37.06 Aligned_cols=56 Identities=18% Similarity=0.291 Sum_probs=44.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHh
Q 023798 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRG 64 (277)
Q Consensus 6 ~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~ 64 (277)
.++|-|.++|.....+||...|+.|+. ..+.|+|-. .-.||..|.+...|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvD--dthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVD--DTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhc-CCceeEEee--cceeEEeecchHHHHHHhhc
Confidence 468899999999999999999999975 334443311 23799999999999999993
No 221
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=84.37 E-value=3.2 Score=33.94 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=36.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcCh
Q 023798 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEA 55 (277)
Q Consensus 6 ~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~ 55 (277)
.+-|+++||+.++...||+..+.+.|-+ -+.|.|.|+ .|-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswkg~-~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWKGH-FGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCC-ceeEeeecC-CcceeEecCCc
Confidence 3569999999999999999999887643 244444443 67899999875
No 222
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=82.88 E-value=0.72 Score=43.23 Aligned_cols=58 Identities=16% Similarity=0.203 Sum_probs=48.7
Q ss_pred ccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceec
Q 023798 113 VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (277)
Q Consensus 113 v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~ 172 (277)
+.|.+-..+-..|..+|.+||.+..++...+-+ .|.|+|...+.|..|++.++|+++-
T Consensus 303 ~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs 360 (1007)
T KOG4574|consen 303 LENNAVNLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVS 360 (1007)
T ss_pred hhcccccchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCccc
Confidence 344455566678889999999999999887755 7899999999999999999999864
No 223
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=81.69 E-value=1.3 Score=31.39 Aligned_cols=56 Identities=23% Similarity=0.377 Sum_probs=29.6
Q ss_pred eEEEcCCCCC---------CCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHH-HHHH
Q 023798 8 TLYVGNLPGD---------IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAE-DAIR 63 (277)
Q Consensus 8 ~l~v~nL~~~---------~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~-~a~~ 63 (277)
++.|-|++.. ++.+.|.+.|..|.+++-..+.......|+++|+|...-..- .|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 4556688553 467789999999998765444333455789999999754433 3444
No 224
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=79.91 E-value=9.6 Score=23.97 Aligned_cols=50 Identities=14% Similarity=0.250 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceecc
Q 023798 119 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (277)
Q Consensus 119 ~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g 173 (277)
.++-++++..+..|+-. .|..+..+ =||.|.+..+|+++....+|..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~tG--fYIvF~~~~Ea~rC~~~~~~~~~f~ 60 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDRTG--FYIVFNDSKEAERCFRAEDGTLFFT 60 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecCCE--EEEEECChHHHHHHHHhcCCCEEEE
Confidence 46788999999998732 23334433 3899999999999999999998876
No 225
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=79.21 E-value=0.25 Score=43.83 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=53.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCc
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH 73 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~ 73 (277)
.+|+||+.|++++++-.+|..++..+--+..+.+-. ......+++|.|.---....|+.+||+..+...
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 468899999999999999999999887666666622 123356789999988888888888888776543
No 226
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=78.76 E-value=2.2 Score=36.45 Aligned_cols=67 Identities=21% Similarity=0.283 Sum_probs=50.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeE-EEeec-----CCCCCceEEEEEcChHHHHHHHHhcCCCccC
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAH-IDLKI-----PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~-v~~~~-----~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~ 71 (277)
.-+.|.|.+||+.+++.+|.+-+.+|-+-.. ..+.. ..+..+.|||.|..+++.......++|..|.
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 4567889999999999999998888764333 33321 1233678999999999988888888887653
No 227
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=74.59 E-value=20 Score=23.77 Aligned_cols=55 Identities=16% Similarity=0.128 Sum_probs=41.2
Q ss_pred EccCCCCCCCHHHHHHHHhh-cC-ceeEEEEEecCCC-CEEEEEEcChhhHHHHHHHc
Q 023798 112 LVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSG-TTGIVDYTNYDDMKHAIKKL 166 (277)
Q Consensus 112 ~v~~l~~~~~~~~l~~~f~~-~g-~i~~~~~~~~~~~-~~afv~f~~~~~a~~a~~~l 166 (277)
|+-..+..++..+|++.++. || .|..+....-+.+ .-|+|.+....+|.+....+
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 34445678899999998876 66 6777777666554 37999999999998876644
No 228
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=73.67 E-value=22 Score=23.14 Aligned_cols=56 Identities=14% Similarity=0.095 Sum_probs=41.4
Q ss_pred EEccCCCCCCCHHHHHHHHhh-cC-ceeEEEEEecCCC-CEEEEEEcChhhHHHHHHHc
Q 023798 111 VLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSG-TTGIVDYTNYDDMKHAIKKL 166 (277)
Q Consensus 111 l~v~~l~~~~~~~~l~~~f~~-~g-~i~~~~~~~~~~~-~~afv~f~~~~~a~~a~~~l 166 (277)
-|+-..+..++..+|++.++. || ++..+....-+.. .-|||.+..-..|.+....+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 445556788899999998876 56 6777776666544 37999999988888776644
No 229
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=72.59 E-value=21 Score=32.73 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=27.8
Q ss_pred CCCCccceEEccCCCCC-CCHHHHHHHHhhcCceeEEEEEec
Q 023798 103 VSRRSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRD 143 (277)
Q Consensus 103 ~~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~ 143 (277)
........+.|.+++.+ ++..--.+.+.++|++..|.+...
T Consensus 56 ~LQenDrvvMVNGvsMenv~haFAvQqLrksgK~A~ItvkRp 97 (1027)
T KOG3580|consen 56 LLQENDRVVMVNGVSMENVLHAFAVQQLRKSGKVAAITVKRP 97 (1027)
T ss_pred ccccCCeEEEEcCcchhhhHHHHHHHHHHhhccceeEEeccc
Confidence 33445567888888754 444555677788998888777554
No 230
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=72.18 E-value=9.8 Score=23.49 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=16.6
Q ss_pred HHHHHHHhccCceeEEEee
Q 023798 21 REVEDLFYKYGPIAHIDLK 39 (277)
Q Consensus 21 ~~L~~~F~~~G~v~~v~~~ 39 (277)
.+|+++|+..|+|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999999888873
No 231
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=71.35 E-value=18 Score=31.33 Aligned_cols=80 Identities=18% Similarity=0.361 Sum_probs=58.7
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHHhcc----CceeEEEeecC-------------C---------------------
Q 023798 2 SSRASRTLYVGNLPGD-IREREVEDLFYKY----GPIAHIDLKIP-------------P--------------------- 42 (277)
Q Consensus 2 ~~~~~~~l~v~nL~~~-~t~~~L~~~F~~~----G~v~~v~~~~~-------------~--------------------- 42 (277)
++.+++.|-|-||.|. +...+|..+|+.| |.|..|.|..+ |
T Consensus 142 ~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~d 221 (622)
T COG5638 142 EGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDD 221 (622)
T ss_pred CCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCc
Confidence 3578899999999996 8999999999866 45666666110 0
Q ss_pred ---------------CC-------------------CceEEEEEcChHHHHHHHHhcCCCccC--CceEEEEEcc
Q 023798 43 ---------------RP-------------------PGYAFVEFEEARDAEDAIRGRDGYDFD--GHRLRVELAH 81 (277)
Q Consensus 43 ---------------~~-------------------~g~afV~f~~~~~A~~a~~~l~g~~~~--g~~l~v~~a~ 81 (277)
.- .-||.|+|.+.+.+...+..++|..+. +..+-+.|..
T Consensus 222 n~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvP 296 (622)
T COG5638 222 NVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVP 296 (622)
T ss_pred cchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeecC
Confidence 00 237889999999999999999998886 3455555544
No 232
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=68.36 E-value=2.1 Score=40.23 Aligned_cols=26 Identities=8% Similarity=0.003 Sum_probs=11.7
Q ss_pred cceEEccCCCCC------CCHHHHHHHHhhcC
Q 023798 108 EYRVLVTGLPSS------ASWQDLKDHMRRAG 133 (277)
Q Consensus 108 ~~~l~v~~l~~~------~~~~~l~~~f~~~g 133 (277)
....|++++... +.++.+.++....|
T Consensus 145 ~qR~f~gvvtk~~DtygfVD~dvffQls~~~g 176 (1194)
T KOG4246|consen 145 PQRRFAGVVTKQTDTYGFVDQDVFFQLSKMQG 176 (1194)
T ss_pred cceeeehhhhhhccccccccHHHHHHHHHHhc
Confidence 345565554332 23444455444433
No 233
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=66.87 E-value=7.6 Score=31.70 Aligned_cols=65 Identities=22% Similarity=0.452 Sum_probs=44.8
Q ss_pred CCeEEEcCCCCC------------CCHHHHHHHHhccCceeEEEeec--------CCC-----CCceE---------EEE
Q 023798 6 SRTLYVGNLPGD------------IREREVEDLFYKYGPIAHIDLKI--------PPR-----PPGYA---------FVE 51 (277)
Q Consensus 6 ~~~l~v~nL~~~------------~t~~~L~~~F~~~G~v~~v~~~~--------~~~-----~~g~a---------fV~ 51 (277)
+.||++.+||.. -+++-|...|+.||+|..|.|+. ++. ..||+ ||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 568888888863 36778999999999999998843 222 23343 455
Q ss_pred EcChHHHHHHHHhcCCCcc
Q 023798 52 FEEARDAEDAIRGRDGYDF 70 (277)
Q Consensus 52 f~~~~~A~~a~~~l~g~~~ 70 (277)
|.....-..|+..|.|..+
T Consensus 229 fmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHhHHHHHHHHhcchH
Confidence 5555555667777777665
No 234
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.79 E-value=1.1 Score=38.75 Aligned_cols=75 Identities=8% Similarity=-0.105 Sum_probs=56.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCceeEEEee---cCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 6 ~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~---~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
+...|+..||..+++++|..+|.-||.|..+.+. ..+...-.+||.... ++|..+|..+.-..+.|..+.|.++.
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 3566788999999999999999999999888772 234445578887776 56667776666666777777776665
No 235
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.51 E-value=58 Score=29.82 Aligned_cols=70 Identities=14% Similarity=0.200 Sum_probs=54.2
Q ss_pred CccceEEccCCCCC-CCHHHHHHHHhhc----CceeEEEEEecC-------------C----------------------
Q 023798 106 RSEYRVLVTGLPSS-ASWQDLKDHMRRA----GDVCFSQVFRDG-------------S---------------------- 145 (277)
Q Consensus 106 ~~~~~l~v~~l~~~-~~~~~l~~~f~~~----g~i~~~~~~~~~-------------~---------------------- 145 (277)
.....|-|.||.|. +...+|.-+|..| |.|..|.|+... +
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 35678999999987 5778887777643 488888776431 1
Q ss_pred -------C---------CEEEEEEcChhhHHHHHHHcCCceeccce
Q 023798 146 -------G---------TTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (277)
Q Consensus 146 -------~---------~~afv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (277)
. -||.|+|.+.+.|......++|.++....
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~ 297 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSA 297 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecccc
Confidence 0 17999999999999999999999997643
No 236
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=63.60 E-value=18 Score=24.15 Aligned_cols=50 Identities=22% Similarity=0.308 Sum_probs=33.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcC
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEE 54 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~ 54 (277)
...-|||||++..+-+.-...+.+..+.-.-+-+..+....||+|-.+-+
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G~ 73 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLGD 73 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeCC
Confidence 34569999999988877766666655543333333444478899887743
No 237
>PF14893 PNMA: PNMA
Probab=63.52 E-value=9.5 Score=32.51 Aligned_cols=54 Identities=28% Similarity=0.402 Sum_probs=34.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhc-cCceeEEEe----ecCCCCCceEEEEEcC
Q 023798 1 MSSRASRTLYVGNLPGDIREREVEDLFYK-YGPIAHIDL----KIPPRPPGYAFVEFEE 54 (277)
Q Consensus 1 ~~~~~~~~l~v~nL~~~~t~~~L~~~F~~-~G~v~~v~~----~~~~~~~g~afV~f~~ 54 (277)
|.=++-+.|.|.+||.++++++|.+.+.. +-++-...+ .....+.-.|+|+|..
T Consensus 13 m~~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e 71 (331)
T PF14893_consen 13 MGVDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAE 71 (331)
T ss_pred cCcChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeeccc
Confidence 33467789999999999999999888763 222222222 1111223478888875
No 238
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=62.84 E-value=37 Score=22.50 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=41.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-cC-ceeEEEeecCCCCCceEEEEEcChHHHHHHHHhc
Q 023798 9 LYVGNLPGDIREREVEDLFYK-YG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (277)
Q Consensus 9 l~v~nL~~~~t~~~L~~~F~~-~G-~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l 65 (277)
.|+-.++..++..+|++.++. || .|..|.........--|||.+.....|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 444568899999999999996 45 4666666444444457999999999988875544
No 239
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=61.97 E-value=6.2 Score=31.43 Aligned_cols=35 Identities=14% Similarity=0.253 Sum_probs=30.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEe
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL 38 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~ 38 (277)
....+||+-|||..+|++.|..+.+++|-+..+.+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 46789999999999999999999999997665555
No 240
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=61.91 E-value=18 Score=30.64 Aligned_cols=56 Identities=21% Similarity=0.165 Sum_probs=36.7
Q ss_pred EEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHH
Q 023798 48 AFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKD 127 (277)
Q Consensus 48 afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~ 127 (277)
|||+|.+..+|..|++.+.... +..+.+..|..+ ..+.-.||.....+..++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP-------------------------~DI~W~NL~~~~~~r~~R~ 53 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEP-------------------------DDIIWENLSISSKQRFLRR 53 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCc-------------------------ccccccccCCChHHHHHHH
Confidence 7999999999999999554433 244566665321 3566677766666665555
Q ss_pred HHh
Q 023798 128 HMR 130 (277)
Q Consensus 128 ~f~ 130 (277)
.+.
T Consensus 54 ~~~ 56 (325)
T PF02714_consen 54 IIV 56 (325)
T ss_pred HHH
Confidence 443
No 241
>KOG3869 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.77 E-value=3.1 Score=35.87 Aligned_cols=14 Identities=14% Similarity=-0.164 Sum_probs=6.5
Q ss_pred cccchhhhheeeee
Q 023798 259 SRYASLLSFVMHVG 272 (277)
Q Consensus 259 ~r~~~~~~~~~~~~ 272 (277)
.+..+|++..+-+|
T Consensus 312 r~~~~~~~~~~~~~ 325 (450)
T KOG3869|consen 312 RRHSSYGNREREKR 325 (450)
T ss_pred cccccccccccccc
Confidence 34455555444444
No 242
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=61.69 E-value=23 Score=21.92 Aligned_cols=20 Identities=10% Similarity=0.277 Sum_probs=16.3
Q ss_pred HHHHHHHHhhcCceeEEEEE
Q 023798 122 WQDLKDHMRRAGDVCFSQVF 141 (277)
Q Consensus 122 ~~~l~~~f~~~g~i~~~~~~ 141 (277)
.++|+++|+..|+|.-+.+.
T Consensus 8 ~~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHHhcCcEEEEEEc
Confidence 36899999999998876664
No 243
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.33 E-value=49 Score=28.79 Aligned_cols=55 Identities=9% Similarity=0.074 Sum_probs=45.0
Q ss_pred cceEEccCCCCCCCHHHHHHHHhhcCc-eeEEEEEecCCCCEEEEEEcChhhHHHHHHH
Q 023798 108 EYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRDGSGTTGIVDYTNYDDMKHAIKK 165 (277)
Q Consensus 108 ~~~l~v~~l~~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~ 165 (277)
...|.|.++|.....++|...|+.|+. -..|.++.+. .||..|....-|..|+..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt---halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT---HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc---eeEEeecchHHHHHHhhc
Confidence 357889999999989999999999874 4456666664 689999999999999873
No 244
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=59.60 E-value=5.1 Score=26.83 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=21.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHh
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFY 28 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~ 28 (277)
-..++|.|.|||..+++++|++.++
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeEE
Confidence 3568999999999999999987653
No 245
>KOG2812 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.32 E-value=13 Score=31.52 Aligned_cols=8 Identities=50% Similarity=0.493 Sum_probs=3.4
Q ss_pred CCCCcccc
Q 023798 254 KPRSLSRY 261 (277)
Q Consensus 254 r~rs~~r~ 261 (277)
++||+++.
T Consensus 87 ~sRs~sr~ 94 (426)
T KOG2812|consen 87 RSRSPSRD 94 (426)
T ss_pred cccCCCcc
Confidence 34444443
No 246
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=58.06 E-value=61 Score=26.83 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=36.7
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChh
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYD 157 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~ 157 (277)
....+.|+++||+.++.-.+|+..+.+-+-+- +.+.....-+-||+.|.+..
T Consensus 327 a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 327 AGAKTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred CccccceeeccCccccchHHHHHHHHhcCCCc-eeEeeecCCcceeEecCCcc
Confidence 34456799999999999999999998877332 12222233347999998744
No 247
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=56.01 E-value=54 Score=21.33 Aligned_cols=58 Identities=16% Similarity=0.214 Sum_probs=41.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhc-cC-ceeEEEeecCCCCCceEEEEEcChHHHHHHHHhc
Q 023798 8 TLYVGNLPGDIREREVEDLFYK-YG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (277)
Q Consensus 8 ~l~v~nL~~~~t~~~L~~~F~~-~G-~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l 65 (277)
.-|+-.++..++..+|+..++. || .|..|.........--|||.+...+.|...-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 3455578999999999999986 44 4666665433333447999999888887755433
No 248
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=53.14 E-value=73 Score=23.57 Aligned_cols=56 Identities=14% Similarity=0.120 Sum_probs=40.2
Q ss_pred eEEccCCCCCCCHHHHHHHHhh-cC-ceeEEEEEecCCC-CEEEEEEcChhhHHHHHHH
Q 023798 110 RVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSG-TTGIVDYTNYDDMKHAIKK 165 (277)
Q Consensus 110 ~l~v~~l~~~~~~~~l~~~f~~-~g-~i~~~~~~~~~~~-~~afv~f~~~~~a~~a~~~ 165 (277)
..++..++...+..+|++.++. |+ .|..|....-+.+ .-|||.+....+|.+....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVANK 141 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 4555667788899999999886 65 5666666665554 3799999887776655543
No 249
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=52.24 E-value=51 Score=27.44 Aligned_cols=60 Identities=5% Similarity=0.067 Sum_probs=47.2
Q ss_pred CCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecC-----------CCCEEEEEEcChhhHHHH
Q 023798 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-----------SGTTGIVDYTNYDDMKHA 162 (277)
Q Consensus 103 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~-----------~~~~afv~f~~~~~a~~a 162 (277)
........|.+.|+...++--.+...|-+||.|+.|.++.+. ......+.|-+.+.+..-
T Consensus 10 dD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdF 80 (309)
T PF10567_consen 10 DDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDF 80 (309)
T ss_pred CccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHH
Confidence 334455678899999999999999999999999999999875 112678888887776543
No 250
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=51.75 E-value=12 Score=20.23 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=10.5
Q ss_pred CCCCHHHHHHHHhccCc
Q 023798 16 GDIREREVEDLFYKYGP 32 (277)
Q Consensus 16 ~~~t~~~L~~~F~~~G~ 32 (277)
.++++++|++.|...+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 46899999999987653
No 251
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=51.42 E-value=20 Score=30.78 Aligned_cols=66 Identities=15% Similarity=0.324 Sum_probs=48.0
Q ss_pred cceEEccCCCCCCCHHHHHHHHhhcCc-eeEEEEEecCCC------CEEEEEEcChhhHHHHHHHcCCceecc
Q 023798 108 EYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRDGSG------TTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (277)
Q Consensus 108 ~~~l~v~~l~~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~------~~afv~f~~~~~a~~a~~~l~g~~~~g 173 (277)
-..+.|..||+..++++|.+....+-. +....+.....+ +.|||.|...++...-...++|..+-.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 357888999999999999888877653 333333322111 268999999999888888888887643
No 252
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=51.33 E-value=59 Score=26.93 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=16.4
Q ss_pred EEEEcChHHHHHHHHhcCC-CccCCceEEEEE
Q 023798 49 FVEFEEARDAEDAIRGRDG-YDFDGHRLRVEL 79 (277)
Q Consensus 49 fV~f~~~~~A~~a~~~l~g-~~~~g~~l~v~~ 79 (277)
++-|++.-.++-++..|.. ..++-+.|+|.+
T Consensus 56 ilgfEDdVViefvynqLee~k~ldpkkmQiNl 87 (354)
T KOG2146|consen 56 ILGFEDDVVIEFVYNQLEEAKNLDPKKMQINL 87 (354)
T ss_pred hhccccchhHHHHHHHHhhhcCCCchheeeee
Confidence 4556665555555555554 445555555544
No 253
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=50.62 E-value=28 Score=22.93 Aligned_cols=35 Identities=37% Similarity=0.498 Sum_probs=24.6
Q ss_pred eeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCc
Q 023798 33 IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYD 69 (277)
Q Consensus 33 v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~ 69 (277)
|..+.. .+..+||-|||=.++.++..|+..+.+..
T Consensus 34 I~Si~~--~~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 34 IYSIFA--PDSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp --EEEE---TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred eEEEEE--eCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 444433 34579999999999999999999776543
No 254
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=49.50 E-value=35 Score=23.32 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=30.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcCh
Q 023798 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEA 55 (277)
Q Consensus 6 ~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~ 55 (277)
..-||||+++..+-+.--..+-+.++.=.-+-+..+....||+|-.+-+.
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATNTESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCCcEEEecCCC
Confidence 45689999988877655555555454322222223445568988887753
No 255
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=49.11 E-value=69 Score=20.54 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=31.6
Q ss_pred HHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcC
Q 023798 123 QDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD 167 (277)
Q Consensus 123 ~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~ 167 (277)
.++.+.+..+| +....+.....+++.|+.+.+.+.++++.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 56677778888 455555554446688888889999888887663
No 256
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=48.38 E-value=42 Score=30.46 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=43.7
Q ss_pred EEcCCCCCCCH---HHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceE
Q 023798 10 YVGNLPGDIRE---REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRL 75 (277)
Q Consensus 10 ~v~nL~~~~t~---~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l 75 (277)
+||||+.-... ..|..+=.+||+|-.+++= ..-.|...+.+.|++|+. -|+..|.+++.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG------~~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLG------SVPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEec------CceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 46777654333 4455555689999988872 123788899999999999 68999999886
No 257
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=47.93 E-value=27 Score=26.74 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=32.5
Q ss_pred CCHHHHHHHHhc-cCceeEEEeec--CC--CCCceEEEEEcChHHHHHHHH
Q 023798 18 IREREVEDLFYK-YGPIAHIDLKI--PP--RPPGYAFVEFEEARDAEDAIR 63 (277)
Q Consensus 18 ~t~~~L~~~F~~-~G~v~~v~~~~--~~--~~~g~afV~f~~~~~A~~a~~ 63 (277)
.|+++|..+..- -|.+..|.+.. ++ ..+|-.||+|...+.|.+.+.
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh
Confidence 455555554431 17888888833 23 457899999999999998777
No 258
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=45.62 E-value=58 Score=20.83 Aligned_cols=43 Identities=23% Similarity=0.425 Sum_probs=29.4
Q ss_pred HHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCcc
Q 023798 21 REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF 70 (277)
Q Consensus 21 ~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~ 70 (277)
.++++ +.+||.|..+.-. ..|+ |-|-+.++++..++.|....|
T Consensus 12 k~~r~-L~kfG~i~Y~Skk-----~kYv-vlYvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 12 KDARQ-LRKFGDIHYVSKK-----MKYV-VLYVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred HhHHh-HhhcccEEEEECC-----ccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 34443 4589999877643 2354 448888999999998876554
No 259
>PF15063 TC1: Thyroid cancer protein 1
Probab=45.06 E-value=15 Score=23.63 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=21.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCce
Q 023798 9 LYVGNLPGDIREREVEDLFYKYGPI 33 (277)
Q Consensus 9 l~v~nL~~~~t~~~L~~~F~~~G~v 33 (277)
--+.||-.+++..+|+.||..-|..
T Consensus 28 kasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 28 KASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred hhhhhhhhccCHHHHHHHHHHccch
Confidence 3467888899999999999999964
No 260
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=43.98 E-value=12 Score=35.65 Aligned_cols=10 Identities=20% Similarity=0.222 Sum_probs=4.0
Q ss_pred CCCCCCHHHH
Q 023798 116 LPSSASWQDL 125 (277)
Q Consensus 116 l~~~~~~~~l 125 (277)
+|..|+...|
T Consensus 195 mpfkwnaqri 204 (1194)
T KOG4246|consen 195 MPFKWNAQRI 204 (1194)
T ss_pred CCccccHHHH
Confidence 3444444333
No 261
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=41.32 E-value=22 Score=32.14 Aligned_cols=41 Identities=44% Similarity=0.651 Sum_probs=35.3
Q ss_pred CceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCCCC
Q 023798 45 PGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRG 85 (277)
Q Consensus 45 ~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~~~ 85 (277)
..|+++.|.++..+.+|+..++|..+.+..+.+..+.....
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~~ 103 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEVG 103 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccccc
Confidence 56999999999999999999999999988888877764443
No 262
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=41.25 E-value=1.2e+02 Score=21.02 Aligned_cols=43 Identities=12% Similarity=0.045 Sum_probs=27.5
Q ss_pred HHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHH
Q 023798 21 REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (277)
Q Consensus 21 ~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~ 63 (277)
.+|..++..+|.-..-.+.....+.-||++++.+.+..-+++.
T Consensus 27 PE~~a~lk~agi~nYSIfLde~~n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 27 PELLALLKEAGIRNYSIFLDEEENLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHHcCCceeEEEecCCcccEEEEEEEcChHHHHHHHh
Confidence 4577888888843332223334456799999997666555554
No 263
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=40.75 E-value=12 Score=31.85 Aligned_cols=65 Identities=18% Similarity=0.158 Sum_probs=0.0
Q ss_pred EEcCCCCCCC-------------HHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceE
Q 023798 10 YVGNLPGDIR-------------EREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRL 75 (277)
Q Consensus 10 ~v~nL~~~~t-------------~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l 75 (277)
|+.|||.-.. ...|.+++.+.|.|..-.|..+ -+.|.+||.+-.+++++++++.|.+.-+.-..|
T Consensus 252 ~~eNl~Rv~p~~l~a~id~~~~~~p~iF~~i~~~G~v~~~EM~rt-FNmGvG~v~iv~~e~~~~~~~~l~~~g~~a~~i 329 (345)
T COG0150 252 FVENLPRVLPEGLGAVIDKPSWPPPPIFKWLQKAGNVEREEMYRT-FNMGVGMVLIVPEEDAEKALALLKEQGETAYVI 329 (345)
T ss_pred hhhhChhhcCccceEEEcCCCCCCcHHHHHHHHhcCCCHHHHHHH-hcCccceEEEEcHHHHHHHHHHHHhcCCceEEE
No 264
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=38.91 E-value=1.4e+02 Score=22.21 Aligned_cols=33 Identities=39% Similarity=0.478 Sum_probs=24.9
Q ss_pred eeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCC
Q 023798 33 IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG 67 (277)
Q Consensus 33 v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g 67 (277)
|.++.++ ...+||.||+....+++..++..+.+
T Consensus 36 i~~i~vp--~~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAP--PELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEcc--CCCCcEEEEEEEChHHHHHHHhcCCC
Confidence 5555543 34689999999988889899886654
No 265
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=38.45 E-value=1.4e+02 Score=23.36 Aligned_cols=47 Identities=17% Similarity=0.142 Sum_probs=33.9
Q ss_pred CCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhc
Q 023798 18 IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (277)
Q Consensus 18 ~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l 65 (277)
.+.++..+++..++.-. +.|+.++...|-+-+...+.++|..|+..+
T Consensus 24 ~~~~~A~~~l~~~~~p~-~ViKadGla~GKGV~i~~~~~eA~~~l~~~ 70 (194)
T PF01071_consen 24 TDYEEALEYLEEQGYPY-VVIKADGLAAGKGVVIADDREEALEALREI 70 (194)
T ss_dssp SSHHHHHHHHHHHSSSE-EEEEESSSCTTTSEEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCc-eEEccCCCCCCCEEEEeCCHHHHHHHHHHh
Confidence 36677778887776433 555666666666777789999999998864
No 266
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=38.25 E-value=3.4e+02 Score=25.40 Aligned_cols=96 Identities=15% Similarity=0.169 Sum_probs=58.7
Q ss_pred HHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcC--CCcc------CCceEEEEEccCCCCCCCCCCC
Q 023798 21 REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD--GYDF------DGHRLRVELAHGGRGRSSSDRH 92 (277)
Q Consensus 21 ~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~--g~~~------~g~~l~v~~a~~~~~~~~~~~~ 92 (277)
++|.+.|..-+-|..|.+. .+||-++.+....-+......+. +..+ .|++|.|+|+.+...
T Consensus 61 ~~i~~~l~~~~~~~~veia----GpgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNpt------- 129 (577)
T COG0018 61 EEIAEKLDTDEIIEKVEIA----GPGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPT------- 129 (577)
T ss_pred HHHHHhccccCcEeEEEEc----CCCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCCC-------
Confidence 4455555544446666663 23555555554334444434333 2222 478999999865443
Q ss_pred CCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcC-ceeEEEEEec
Q 023798 93 SSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRD 143 (277)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~ 143 (277)
.-++|+.+-..+--+-|-.++...| .|.....+.|
T Consensus 130 ----------------kplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD 165 (577)
T COG0018 130 ----------------GPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVND 165 (577)
T ss_pred ----------------CCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECc
Confidence 3577888887777888888998888 5666665555
No 267
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=37.31 E-value=1.3e+02 Score=20.49 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=31.7
Q ss_pred CCCCCCHHHHHHHHhcc--------CceeEEEe--------ecCCCCCc-eEEEEEcChHHHHHHHH
Q 023798 14 LPGDIREREVEDLFYKY--------GPIAHIDL--------KIPPRPPG-YAFVEFEEARDAEDAIR 63 (277)
Q Consensus 14 L~~~~t~~~L~~~F~~~--------G~v~~v~~--------~~~~~~~g-~afV~f~~~~~A~~a~~ 63 (277)
|.++++++++..+...+ |.|..+.- +..+...| |.++.|.-..++.+.++
T Consensus 14 l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~ele 80 (97)
T CHL00123 14 LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLE 80 (97)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHH
Confidence 57788888876665443 35555443 12345556 67888887777777666
No 268
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=37.03 E-value=72 Score=21.32 Aligned_cols=49 Identities=22% Similarity=0.287 Sum_probs=27.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhc-cCceeEEEeecCCCCCceEEEEEcC
Q 023798 6 SRTLYVGNLPGDIREREVEDLFYK-YGPIAHIDLKIPPRPPGYAFVEFEE 54 (277)
Q Consensus 6 ~~~l~v~nL~~~~t~~~L~~~F~~-~G~v~~v~~~~~~~~~g~afV~f~~ 54 (277)
..-||||+++..+-+.--..+-+. .++=.-+-+..+....||.|-.+-+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 25 RAGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEeCCCCCCcEEEecCC
Confidence 456899999887765544444333 2322112223344557888877665
No 269
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=36.82 E-value=36 Score=22.49 Aligned_cols=17 Identities=12% Similarity=0.222 Sum_probs=11.7
Q ss_pred CCCCHHHHHHHHhhcCc
Q 023798 118 SSASWQDLKDHMRRAGD 134 (277)
Q Consensus 118 ~~~~~~~l~~~f~~~g~ 134 (277)
...+.+++.+++..|..
T Consensus 60 ~~Pt~EevDdfL~~y~~ 76 (85)
T PF12091_consen 60 SEPTQEEVDDFLGGYDA 76 (85)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 34577888888777653
No 270
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=36.73 E-value=47 Score=21.09 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=22.5
Q ss_pred ceEEEEEcChHHHHHHHHhcCCCccCCc
Q 023798 46 GYAFVEFEEARDAEDAIRGRDGYDFDGH 73 (277)
Q Consensus 46 g~afV~f~~~~~A~~a~~~l~g~~~~g~ 73 (277)
.+++|.|.+..+|.+|-..|....+..+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 3789999999999999998876655443
No 271
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=35.52 E-value=57 Score=26.85 Aligned_cols=27 Identities=26% Similarity=0.112 Sum_probs=22.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCce
Q 023798 7 RTLYVGNLPGDIREREVEDLFYKYGPI 33 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~L~~~F~~~G~v 33 (277)
....|+|||++++-.-|..++...-.+
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~ 122 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFII 122 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCcc
Confidence 456789999999999999998765444
No 272
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=35.19 E-value=1.3e+02 Score=28.44 Aligned_cols=66 Identities=11% Similarity=0.155 Sum_probs=50.7
Q ss_pred EEEcCCC--CCCCHHHHHHHHhccCcee-----EEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 9 LYVGNLP--GDIREREVEDLFYKYGPIA-----HIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 9 l~v~nL~--~~~t~~~L~~~F~~~G~v~-----~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
+|| |+- ..++..+|..++..-+.|. .|.|. ..|.||+... +.|...+..|++..+.|+.|.|+.+.
T Consensus 489 ~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~-----~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 489 YRI-EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF-----ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred EEE-ecccccCCCHHHHHHHHHhhcCCChhhCCcEEEe-----CCceEEEcCh-hhHHHHHHHhccccccCCceEEEECC
Confidence 444 553 3588899988888666543 34443 4599999987 66888999999999999999999885
No 273
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=34.46 E-value=1.1e+02 Score=20.90 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCC
Q 023798 17 DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG 67 (277)
Q Consensus 17 ~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g 67 (277)
+-.+++|..+...=|.|.+|.+..+.-..--|.+...+..+++..+..|+.
T Consensus 8 ~~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~~ 58 (98)
T PF02829_consen 8 DEIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISSRRDVDKFIEKLEK 58 (98)
T ss_dssp GGHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCCHHHHHHHHHHHhc
Confidence 345677777877667899999854433344567788999999999997764
No 274
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=34.34 E-value=1.6e+02 Score=21.79 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=36.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-cC-ceeEEEeecCCCCCceEEEEEcChHHHHHHHH
Q 023798 9 LYVGNLPGDIREREVEDLFYK-YG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (277)
Q Consensus 9 l~v~nL~~~~t~~~L~~~F~~-~G-~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~ 63 (277)
.|+-.+...++..+|++.++. |+ .|..|.........--|||.+....+|.....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 444467889999999999986 44 35555543333333479999988777665444
No 275
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=33.80 E-value=34 Score=26.24 Aligned_cols=64 Identities=13% Similarity=0.162 Sum_probs=42.3
Q ss_pred ceEEccCCCCCCC-----HHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccc
Q 023798 109 YRVLVTGLPSSAS-----WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (277)
Q Consensus 109 ~~l~v~~l~~~~~-----~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~ 174 (277)
+.+++++++..+. ......+|.+|.+.....++... +..-|.|.+++.|..|.-.+++..+.|+
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf--rrvRi~f~~p~~a~~a~i~~~~~~f~~~ 79 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF--RRVRINFSNPEAAADARIKLHSTSFNGK 79 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh--ceeEEeccChhHHHHHHHHhhhcccCCC
Confidence 4566677766542 23345566655554433333321 2567889999999999999999999987
No 276
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=32.24 E-value=1.1e+02 Score=17.82 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=27.3
Q ss_pred HHHHHHHhccC-ceeEEEeecCCCCCceEEEEEcChHHHHHHH
Q 023798 21 REVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAI 62 (277)
Q Consensus 21 ~~L~~~F~~~G-~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~ 62 (277)
.+|-++|...| .|..+.........+...+.+.+.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 44556666665 5777776443345667777888877777765
No 277
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=31.79 E-value=3.8e+02 Score=25.43 Aligned_cols=59 Identities=14% Similarity=0.140 Sum_probs=34.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhc---cCceeEEEeecCCCCCceEE-EEEcChHHHHHHHHhc
Q 023798 6 SRTLYVGNLPGDIREREVEDLFYK---YGPIAHIDLKIPPRPPGYAF-VEFEEARDAEDAIRGR 65 (277)
Q Consensus 6 ~~~l~v~nL~~~~t~~~L~~~F~~---~G~v~~v~~~~~~~~~g~af-V~f~~~~~A~~a~~~l 65 (277)
.++|.|+.||+.++.+.|.+.... -|.+. |.-..+....+..| |++.....++..+..|
T Consensus 220 ~~~ivItEiP~~~~~~~li~~i~~~~~~~ki~-I~~i~D~s~~~v~i~i~l~~~~~~~~~~~~L 282 (635)
T PRK09631 220 EKTIVIREIPFGTTTESLIASIEKAARKGKIK-ISSINDYTAENVEIEIKLPRGVYASEVIEAL 282 (635)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHcCCCc-cceeEeCCCCcEEEEEEECCCCCHHHHHHHH
Confidence 468999999999999998886553 24433 22112212234444 4455555555555543
No 278
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=31.52 E-value=15 Score=23.13 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=17.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHh
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFY 28 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~ 28 (277)
-+++||||+||..+-+++=..++.
T Consensus 26 tSr~vflG~IP~~W~~~~~~~~~k 49 (67)
T PF15407_consen 26 TSRRVFLGPIPEIWLQDHRKSWYK 49 (67)
T ss_pred cCceEEECCCChHHHHcCcchHHH
Confidence 468999999999876665444443
No 279
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=31.39 E-value=1.5e+02 Score=19.18 Aligned_cols=60 Identities=7% Similarity=0.137 Sum_probs=37.8
Q ss_pred EEccCCCCCCCHHHHHHHHhh-------cCceeEEEEEec--CCCCEEEEEEcChhhHHHHHHHcCCcee
Q 023798 111 VLVTGLPSSASWQDLKDHMRR-------AGDVCFSQVFRD--GSGTTGIVDYTNYDDMKHAIKKLDDSEF 171 (277)
Q Consensus 111 l~v~~l~~~~~~~~l~~~f~~-------~g~i~~~~~~~~--~~~~~afv~f~~~~~a~~a~~~l~g~~~ 171 (277)
|...++|..++.++|.+.... +..|..+...-. ..+.||+.+-.+.+...++.+.- |...
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~a-G~p~ 71 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARRA-GLPA 71 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHHc-CCCc
Confidence 344567877888888776543 334555555544 44447877777877777776644 5443
No 280
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=31.06 E-value=1.6e+02 Score=19.72 Aligned_cols=65 Identities=11% Similarity=0.233 Sum_probs=41.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHh-ccCc-eeEEEeecCCCC----CceEEEEEcChHHHHHHHHhcCC
Q 023798 2 SSRASRTLYVGNLPGDIREREVEDLFY-KYGP-IAHIDLKIPPRP----PGYAFVEFEEARDAEDAIRGRDG 67 (277)
Q Consensus 2 ~~~~~~~l~v~nL~~~~t~~~L~~~F~-~~G~-v~~v~~~~~~~~----~g~afV~f~~~~~A~~a~~~l~g 67 (277)
++++++.||+ +|...++-..|.+.|. ..|. ...+.+..+|.. +-=+=+.|++-+..++..+.+-|
T Consensus 30 v~qd~telfF-kiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG 100 (103)
T COG5227 30 VDQDGTELFF-KIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGG 100 (103)
T ss_pred ecCCCCEEEE-EEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcC
Confidence 3567788887 8999999999999998 3453 455555433211 11234567776766666665544
No 281
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=30.49 E-value=1.2e+02 Score=18.02 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=39.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcCh----HHHHHHHHh
Q 023798 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEA----RDAEDAIRG 64 (277)
Q Consensus 8 ~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~----~~A~~a~~~ 64 (277)
|+.|.||.-..-...|.+.+...-.|..+.+... .+-+-|.|... ++..++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~---~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE---TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT---TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC---CCEEEEEEecCCCCHHHHHHHHHH
Confidence 5778888877778889999998888988888532 45788888755 445555553
No 282
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=29.29 E-value=1.1e+02 Score=20.98 Aligned_cols=46 Identities=24% Similarity=0.373 Sum_probs=27.3
Q ss_pred eEEEcCCCCCCCHHHHHH---HHhccCceeEEEe-----ecCCCCCceEEEEEc
Q 023798 8 TLYVGNLPGDIREREVED---LFYKYGPIAHIDL-----KIPPRPPGYAFVEFE 53 (277)
Q Consensus 8 ~l~v~nL~~~~t~~~L~~---~F~~~G~v~~v~~-----~~~~~~~g~afV~f~ 53 (277)
..|+.|||.++-+.++.. +|..+++-..|.. .......|++.+.+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 358889999988888654 4555554444544 223455666655544
No 283
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=29.14 E-value=1.8e+02 Score=19.45 Aligned_cols=45 Identities=9% Similarity=-0.041 Sum_probs=33.2
Q ss_pred HHHHHHHHhhcC-ceeEEEEEecCCCCEEEEEEcChhhHHHHHHHc
Q 023798 122 WQDLKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL 166 (277)
Q Consensus 122 ~~~l~~~f~~~g-~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l 166 (277)
.+.+++++...| ++..+.+...+......+++.+.+.|.++.-.+
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHH
Confidence 456777777776 788888887776667788888888777666443
No 284
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=28.97 E-value=1.1e+02 Score=20.68 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=35.2
Q ss_pred CCCCCCHHHHHHHHhhcCc-eeEEEEEecCCCCEEEEEEcChhhHHHHHHHcC
Q 023798 116 LPSSASWQDLKDHMRRAGD-VCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD 167 (277)
Q Consensus 116 l~~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~ 167 (277)
+.+..+...|...|..-|. -.-..+-+|.-..+|.|.|.+.+.+..|...|-
T Consensus 20 ~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 20 QTPNLDNNQILKQFPFPGKKNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred cCcccChhHHHHhccCCCcccCCchhccccceEeEEEECCChHHHHHHHHHHH
Confidence 4556667777766666553 233444445444589999999999999888764
No 285
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=28.58 E-value=18 Score=22.79 Aligned_cols=39 Identities=23% Similarity=0.234 Sum_probs=26.5
Q ss_pred HHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcC
Q 023798 21 REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (277)
Q Consensus 21 ~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 66 (277)
++|.+.|..++....+. +-.+|..|.+.++|..++..+.
T Consensus 27 ~~v~~~~~~~~~f~k~v-------kL~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIV-------KLKAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhh-------hhhhccCCCCHHHHHHHHHHhh
Confidence 57777777655433322 2268999999999988877553
No 286
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=28.04 E-value=2.3e+02 Score=24.27 Aligned_cols=50 Identities=14% Similarity=0.107 Sum_probs=28.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEc
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFE 53 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~ 53 (277)
+.|..++|+|-+-.+---+.|.+....-| |..........+.|.|-|-..
T Consensus 78 ~~p~~~~f~GsvG~Dk~ge~l~~~~~~aG-v~~~yq~~~d~~TGtCavli~ 127 (343)
T KOG2854|consen 78 QQPGATVFFGSVGKDKFGELLKSKARAAG-VNVHYQVKEDGPTGTCAVLIT 127 (343)
T ss_pred cCCCceEEEeeccCchHHHHHHHHHHhcC-ceEEEEeccCCCCceEEEEEe
Confidence 45779999998876665666666665555 332222233334555555443
No 287
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=27.76 E-value=15 Score=33.13 Aligned_cols=68 Identities=13% Similarity=0.117 Sum_probs=50.1
Q ss_pred CccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC----CEEEEEEcChhhHHHHHHHcCCceecc
Q 023798 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (277)
Q Consensus 106 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~g 173 (277)
...+.+++.|++++++-++|..++..+--+..+.+...... -+++|.|.---....|+..||+..+..
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 45678999999999999999999998876665555443211 267888987777777777777766654
No 288
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=27.69 E-value=1.7e+02 Score=18.62 Aligned_cols=58 Identities=22% Similarity=0.344 Sum_probs=37.7
Q ss_pred HHHHHHHhccC-ceeEEEeecC---CCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 21 REVEDLFYKYG-PIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 21 ~~L~~~F~~~G-~v~~v~~~~~---~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
.+|.+-|..+| +|..+.-+.. ..+...-||+.....+... .|+=..|+|+.+.|+-..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46788888888 4666665432 3445567787776543333 355567889998887754
No 289
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=27.32 E-value=1.7e+02 Score=18.46 Aligned_cols=59 Identities=22% Similarity=0.338 Sum_probs=38.1
Q ss_pred HHHHHHHhccC-ceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccC
Q 023798 21 REVEDLFYKYG-PIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (277)
Q Consensus 21 ~~L~~~F~~~G-~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~ 82 (277)
++|.+-|...| +|..|.-+. ++.+....||+.....+... .++=..+++..+.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCC
Confidence 56778888887 455555433 34556678888877655333 3444567888888887653
No 290
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=26.58 E-value=53 Score=26.91 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=22.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHh--ccCc
Q 023798 6 SRTLYVGNLPGDIREREVEDLFY--KYGP 32 (277)
Q Consensus 6 ~~~l~v~nL~~~~t~~~L~~~F~--~~G~ 32 (277)
...++|+|||++++..-|..++. .+|.
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~~~~~g~ 125 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLELYRFGR 125 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHHHGGGCE
T ss_pred CceEEEEEecccchHHHHHHHhhcccccc
Confidence 45688999999999999999987 4443
No 291
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=26.53 E-value=2.2e+02 Score=26.00 Aligned_cols=59 Identities=19% Similarity=0.226 Sum_probs=38.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHh----ccCceeEEEeecC--CCCCceEEEEEcChHHHHHHHHhcC
Q 023798 8 TLYVGNLPGDIREREVEDLFY----KYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRD 66 (277)
Q Consensus 8 ~l~v~nL~~~~t~~~L~~~F~----~~G~v~~v~~~~~--~~~~g~afV~f~~~~~A~~a~~~l~ 66 (277)
.+.++.-..+.+.-+|..+|. .+|-|..+.+... +......++.|.+.++|..|+..+.
T Consensus 191 i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 191 ALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred EEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 344443222333456777765 6788988888432 2334577889999999999987653
No 292
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=26.44 E-value=40 Score=27.07 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=27.3
Q ss_pred ceEEccCCCCCCCHHHHHHHHhhcCceeEEEE
Q 023798 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQV 140 (277)
Q Consensus 109 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~ 140 (277)
.++|+-|+|..++++.|..+..+.|.+..+.+
T Consensus 41 d~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 41 DCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 58999999999999999999999996655433
No 293
>PRK15464 cold shock-like protein CspH; Provisional
Probab=25.55 E-value=52 Score=20.89 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=8.4
Q ss_pred CCceEEEEEcC
Q 023798 44 PPGYAFVEFEE 54 (277)
Q Consensus 44 ~~g~afV~f~~ 54 (277)
.+||+||+=.+
T Consensus 15 ~KGfGFI~~~~ 25 (70)
T PRK15464 15 KSGKGFIIPSD 25 (70)
T ss_pred CCCeEEEccCC
Confidence 38999997655
No 294
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=25.47 E-value=62 Score=22.01 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=17.1
Q ss_pred CceEEEEEcChHHHHHHHHhc
Q 023798 45 PGYAFVEFEEARDAEDAIRGR 65 (277)
Q Consensus 45 ~g~afV~f~~~~~A~~a~~~l 65 (277)
--|.+++|.+.+...+|...+
T Consensus 66 VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 66 VVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEEcCchhHHHHHHHHh
Confidence 348999999999988888753
No 295
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=25.19 E-value=2.8e+02 Score=20.27 Aligned_cols=27 Identities=33% Similarity=0.445 Sum_probs=21.5
Q ss_pred CCCCCceEEEEEcChHHHHHHHHhcCC
Q 023798 41 PPRPPGYAFVEFEEARDAEDAIRGRDG 67 (277)
Q Consensus 41 ~~~~~g~afV~f~~~~~A~~a~~~l~g 67 (277)
....+||-||++....+...++..+.|
T Consensus 34 p~~fpGYvFV~~~~~~~~~~~i~~~~g 60 (145)
T TIGR00405 34 PESLKGYILVEAETKIDMRNPIIGVPH 60 (145)
T ss_pred cCCCCcEEEEEEECcHHHHHHHhCCCC
Confidence 345799999999988888888876655
No 296
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=24.46 E-value=1.2e+02 Score=17.94 Aligned_cols=27 Identities=19% Similarity=0.146 Sum_probs=22.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCce
Q 023798 7 RTLYVGNLPGDIREREVEDLFYKYGPI 33 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~L~~~F~~~G~v 33 (277)
..++|.+.....+.++|.+++..+|.-
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~ 28 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGK 28 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCE
Confidence 467777777788999999999999863
No 297
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=24.42 E-value=2.6e+02 Score=19.77 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=19.0
Q ss_pred CCCCCCCHHHHHHHHhccCceeEEEe
Q 023798 13 NLPGDIREREVEDLFYKYGPIAHIDL 38 (277)
Q Consensus 13 nL~~~~t~~~L~~~F~~~G~v~~v~~ 38 (277)
-||+.++ .|-+.|+.=|+|..|..
T Consensus 10 VlPPYTn--KLSDYfeSPGKI~svIt 33 (145)
T TIGR02542 10 VLPPYTN--KLSDYFESPGKIQSVIT 33 (145)
T ss_pred ecCCccc--hhhHHhcCCCceEEEEE
Confidence 4777765 57899999999988765
No 298
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=24.07 E-value=53 Score=20.34 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=10.0
Q ss_pred HHHHHHHHhccCceeEE
Q 023798 20 EREVEDLFYKYGPIAHI 36 (277)
Q Consensus 20 ~~~L~~~F~~~G~v~~v 36 (277)
-=||.+++.+||-+..+
T Consensus 4 lyDVqQLLK~fG~~IY~ 20 (62)
T PF06014_consen 4 LYDVQQLLKKFGIIIYV 20 (62)
T ss_dssp HHHHHHHHHTTS-----
T ss_pred HHHHHHHHHHCCEEEEe
Confidence 35789999999976543
No 299
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=23.94 E-value=3.3e+02 Score=25.35 Aligned_cols=94 Identities=10% Similarity=0.050 Sum_probs=52.8
Q ss_pred CceEEEEEcChHHHHHHHHhcCCCccCCceEE-E--EEccCCCCCCCCCCCCCCCCCC----CCCCCCCccceEEccCCC
Q 023798 45 PGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR-V--ELAHGGRGRSSSDRHSSHSSGR----GRGVSRRSEYRVLVTGLP 117 (277)
Q Consensus 45 ~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~-v--~~a~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~v~~l~ 117 (277)
.--||+++.++..-+-.-..|+-..+.+-.|. | .||.. -.+..-.+.... -..++......+|+.+|.
T Consensus 236 Qi~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPS-----IEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlS 310 (621)
T COG0445 236 QIPCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPS-----IEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLS 310 (621)
T ss_pred ccceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCC-----HHHhhccCCCCccceEEecCCCCCCceEecCccc
Confidence 34699999998777766666665443322221 0 01100 000000000000 012334456789999999
Q ss_pred CCCCHHHHHHHHhhcCceeEEEEEec
Q 023798 118 SSASWQDLKDHMRRAGDVCFSQVFRD 143 (277)
Q Consensus 118 ~~~~~~~l~~~f~~~g~i~~~~~~~~ 143 (277)
..+.++...++....-.++++.+...
T Consensus 311 TSlP~dVQ~~~irsipGlEna~i~rp 336 (621)
T COG0445 311 TSLPEDVQEQIIRSIPGLENAEILRP 336 (621)
T ss_pred ccCCHHHHHHHHHhCcccccceeecc
Confidence 99988888888887777777777654
No 300
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=23.72 E-value=2.3e+02 Score=18.79 Aligned_cols=53 Identities=13% Similarity=0.100 Sum_probs=34.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhc---cCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhc
Q 023798 8 TLYVGNLPGDIREREVEDLFYK---YGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGR 65 (277)
Q Consensus 8 ~l~v~nL~~~~t~~~L~~~F~~---~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l 65 (277)
-|+|..++..++-++|.+.... +-.-..+.|++ +|. .|.|.+.++-+.|+..+
T Consensus 10 di~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGD-----p~tiSS~~EL~EA~rl~ 68 (83)
T cd06404 10 DIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGD-----PCTISSQMELEEAFRLY 68 (83)
T ss_pred cEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCC-----ceeecCHHHHHHHHHHH
Confidence 4778889999998887665542 22222333322 344 37889999999998853
No 301
>PRK02886 hypothetical protein; Provisional
Probab=23.67 E-value=2.2e+02 Score=19.08 Aligned_cols=38 Identities=21% Similarity=0.401 Sum_probs=27.2
Q ss_pred HhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCcc
Q 023798 27 FYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF 70 (277)
Q Consensus 27 F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~ 70 (277)
+..||.|..+.-. ..|+ |-|-+.++|+..++.|....|
T Consensus 21 LrkyG~I~Y~Skr-----~kYv-vlYvn~~~~e~~~~kl~~l~f 58 (87)
T PRK02886 21 LRKFGNVHYVSKR-----LKYA-VLYCDMEQVEDIMNKLSSLPF 58 (87)
T ss_pred HhhcCcEEEEecc-----ccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 4589999877542 2254 458888999999998876554
No 302
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=23.63 E-value=2.2e+02 Score=28.11 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=28.2
Q ss_pred CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEE
Q 023798 41 PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (277)
Q Consensus 41 ~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 77 (277)
-.+.+||-|||=..+.++..||+.+-+.... +.+.|
T Consensus 206 ~D~lkGyIYIEA~KqshV~~Ai~gv~niy~~-~~~lV 241 (1024)
T KOG1999|consen 206 KDHLKGYIYIEADKQSHVKEAIEGVRNIYAN-RILLV 241 (1024)
T ss_pred ccccceeEEEEechhHHHHHHHhhhhhheec-cEEEE
Confidence 3466899999999999999999988776665 43333
No 303
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=23.49 E-value=43 Score=29.14 Aligned_cols=57 Identities=23% Similarity=0.272 Sum_probs=41.8
Q ss_pred CeEEEcCCCCCCCH--------HHHHHHHhc--cCceeEEEeec---CCCCCceEEEEEcChHHHHHHHH
Q 023798 7 RTLYVGNLPGDIRE--------REVEDLFYK--YGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIR 63 (277)
Q Consensus 7 ~~l~v~nL~~~~t~--------~~L~~~F~~--~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~ 63 (277)
+.+|+.++...... +++...|.. .+++..+.+.. ...+.|..|++|...+.|+++..
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 34566666555433 488999988 67777777732 45678889999999999998875
No 304
>KOG1888 consensus Putative phosphoinositide phosphatase [Lipid transport and metabolism]
Probab=23.23 E-value=2.3e+02 Score=27.39 Aligned_cols=72 Identities=21% Similarity=0.229 Sum_probs=42.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhccC-ceeEEEeecCCC-CCceEEEEEcChHHHHHHHHhcCCCccCCceEE
Q 023798 1 MSSRASRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKIPPR-PPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (277)
Q Consensus 1 ~~~~~~~~l~v~nL~~~~t~~~L~~~F~~~G-~v~~v~~~~~~~-~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~ 76 (277)
|..+|...|-....-+.++.....++|..|| +|.-+.+++++. .+. |--=.++-++||..||.....-..|.
T Consensus 306 ~~~KP~I~l~~~DP~y~~a~lHF~~L~~RYG~PIiilNLIKt~ekr~~----E~IL~~eF~~ai~yLNqflp~e~rl~ 379 (868)
T KOG1888|consen 306 MVPKPDIVLDKRDPFYETAALHFDNLVQRYGNPIIILNLIKTNEKRPR----ESILREEFENAIDYLNQFLPPENRLK 379 (868)
T ss_pred cCCCCCeEEeccCCccchHHHHHHHHHHhcCCcEEEEEeeccccCCch----hHHHHHHHHHHHHHHhccCCCcceee
Confidence 3444444444444446788899999999998 577777766542 221 11113555677887875444444443
No 305
>PRK10943 cold shock-like protein CspC; Provisional
Probab=23.16 E-value=65 Score=20.30 Aligned_cols=11 Identities=18% Similarity=0.634 Sum_probs=8.4
Q ss_pred CCceEEEEEcC
Q 023798 44 PPGYAFVEFEE 54 (277)
Q Consensus 44 ~~g~afV~f~~ 54 (277)
.+||+||+=.+
T Consensus 14 ~kGfGFI~~~~ 24 (69)
T PRK10943 14 SKGFGFITPAD 24 (69)
T ss_pred CCCcEEEecCC
Confidence 38999997654
No 306
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=23.06 E-value=3e+02 Score=19.89 Aligned_cols=71 Identities=14% Similarity=0.043 Sum_probs=47.8
Q ss_pred CCCeEEEcCCCCC---CCHHHHHHHHhccC-ceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 5 ASRTLYVGNLPGD---IREREVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 5 ~~~~l~v~nL~~~---~t~~~L~~~F~~~G-~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
+...|.|...... .+...|.+++..-| .++.+... .+...|.|.+.++-.+|.+.|....=.+-.|.+..+
T Consensus 34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~-----~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~ 108 (127)
T PRK10629 34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE-----NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDD 108 (127)
T ss_pred CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee-----CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 4456777766443 56677888888776 34555443 347789999999999998877655544555655554
No 307
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=23.05 E-value=6.5e+02 Score=23.85 Aligned_cols=58 Identities=7% Similarity=0.136 Sum_probs=41.2
Q ss_pred CCCCCCHHHHHHHHhhcCce-----eEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 116 LPSSASWQDLKDHMRRAGDV-----CFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 116 l~~~~~~~~l~~~f~~~g~i-----~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
-...++..+|..++..-+.| -.|.++.+ |.||+... ..|...+..|++..+.|+.+..
T Consensus 495 ~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~----~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~ 557 (629)
T PRK11634 495 RDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS----HSTIELPK-GMPGEVLQHFTRTRILNKPMNM 557 (629)
T ss_pred cccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC----ceEEEcCh-hhHHHHHHHhccccccCCceEE
Confidence 34567888888888766654 34666555 78888654 4578888999999999965443
No 308
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=23.04 E-value=69 Score=20.58 Aligned_cols=11 Identities=27% Similarity=0.546 Sum_probs=8.0
Q ss_pred CCceEEEEEcC
Q 023798 44 PPGYAFVEFEE 54 (277)
Q Consensus 44 ~~g~afV~f~~ 54 (277)
.+||+||+=.+
T Consensus 12 ~KGfGFI~~~~ 22 (74)
T PRK09937 12 AKGFGFICPEG 22 (74)
T ss_pred CCCeEEEeeCC
Confidence 38999996543
No 309
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=22.97 E-value=68 Score=20.11 Aligned_cols=38 Identities=26% Similarity=0.448 Sum_probs=20.0
Q ss_pred CCceEEEEEcCh-HHHH---HHHHhcCC--CccCCceEEEEEccC
Q 023798 44 PPGYAFVEFEEA-RDAE---DAIRGRDG--YDFDGHRLRVELAHG 82 (277)
Q Consensus 44 ~~g~afV~f~~~-~~A~---~a~~~l~g--~~~~g~~l~v~~a~~ 82 (277)
.+||+||+=.+. +++- .++. ..+ ..-.|..+.......
T Consensus 12 ~kGfGFI~~~~g~~dvfvH~s~~~-~~g~~~l~~G~~V~f~~~~~ 55 (68)
T TIGR02381 12 AKGFGFICPEGVDGDIFAHYSTIQ-MDGYRTLKAGQKVQFEVVQG 55 (68)
T ss_pred CCCeEEEecCCCCccEEEEHHHhh-hcCCCCCCCCCEEEEEEEEC
Confidence 389999987652 2322 2222 122 223466776666554
No 310
>PRK15463 cold shock-like protein CspF; Provisional
Probab=22.97 E-value=64 Score=20.46 Aligned_cols=11 Identities=9% Similarity=0.271 Sum_probs=8.4
Q ss_pred CCceEEEEEcC
Q 023798 44 PPGYAFVEFEE 54 (277)
Q Consensus 44 ~~g~afV~f~~ 54 (277)
.+||+||+=.+
T Consensus 15 ~kGfGFI~~~~ 25 (70)
T PRK15463 15 KSGKGLITPSD 25 (70)
T ss_pred CCceEEEecCC
Confidence 38999997654
No 311
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=22.77 E-value=3.1e+02 Score=20.00 Aligned_cols=37 Identities=14% Similarity=0.244 Sum_probs=27.6
Q ss_pred CCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 44 PPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 44 ~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
...+-++.+.+.. ...++..|.+..+.|+++.|....
T Consensus 25 ~~~~~icv~g~~~-~~~~L~~l~~~~~~~~~i~v~~~~ 61 (145)
T PF13689_consen 25 SSPFRICVLGDDP-FAEALSTLAGKQVGGRPIRVRRLS 61 (145)
T ss_pred CCCeEEEEECChH-HHHHHHHhhhcccCCCcEEEEECC
Confidence 3446677777655 445677789999999999998763
No 312
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=22.71 E-value=4.9e+02 Score=23.47 Aligned_cols=22 Identities=14% Similarity=0.333 Sum_probs=19.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHh
Q 023798 7 RTLYVGNLPGDIREREVEDLFY 28 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~L~~~F~ 28 (277)
++|.|+.||+.++.+.+.+.+.
T Consensus 226 ~~i~ItElP~~~~~~~~~e~i~ 247 (445)
T cd00187 226 NTIEITELPYQVNKAKLKEKIA 247 (445)
T ss_pred ceEEEEeCCCcccHHHHHHHHH
Confidence 6899999999999999888665
No 313
>PHA01632 hypothetical protein
Probab=22.67 E-value=1.2e+02 Score=18.23 Aligned_cols=22 Identities=14% Similarity=0.436 Sum_probs=16.9
Q ss_pred eEEccCCCCCCCHHHHHHHHhh
Q 023798 110 RVLVTGLPSSASWQDLKDHMRR 131 (277)
Q Consensus 110 ~l~v~~l~~~~~~~~l~~~f~~ 131 (277)
-+.|..+|...|+++|+..+.+
T Consensus 18 yilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 18 YILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EEehhhcCCCCCHHHHHHHHHH
Confidence 3456678999999999887654
No 314
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=22.47 E-value=69 Score=20.21 Aligned_cols=11 Identities=27% Similarity=0.742 Sum_probs=8.3
Q ss_pred CCceEEEEEcC
Q 023798 44 PPGYAFVEFEE 54 (277)
Q Consensus 44 ~~g~afV~f~~ 54 (277)
.+||+||+=.+
T Consensus 14 ~kGyGFI~~~~ 24 (69)
T PRK09507 14 SKGFGFITPED 24 (69)
T ss_pred CCCcEEEecCC
Confidence 38999997654
No 315
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=22.46 E-value=44 Score=20.16 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=17.1
Q ss_pred CCceEEEEEcC-hHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 44 PPGYAFVEFEE-ARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 44 ~~g~afV~f~~-~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.+|||||...+ .++.--.-..|++.+- |=.+.|...
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A~~-gD~V~v~i~ 43 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGAMD-GDKVLVRIT 43 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS-T-T-EEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCCCC-CCEEEEEEe
Confidence 58999999887 3332222333444333 334444444
No 316
>PRK14998 cold shock-like protein CspD; Provisional
Probab=22.43 E-value=73 Score=20.39 Aligned_cols=11 Identities=27% Similarity=0.546 Sum_probs=8.3
Q ss_pred CCceEEEEEcC
Q 023798 44 PPGYAFVEFEE 54 (277)
Q Consensus 44 ~~g~afV~f~~ 54 (277)
.+||+||+=.+
T Consensus 12 ~kGfGFI~~~~ 22 (73)
T PRK14998 12 AKGFGFICPEG 22 (73)
T ss_pred CCceEEEecCC
Confidence 38999997654
No 317
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=22.02 E-value=1e+02 Score=22.57 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=27.1
Q ss_pred EEEcCCCCC-CCHHHHHHHHhccCceeEEEeec
Q 023798 9 LYVGNLPGD-IREREVEDLFYKYGPIAHIDLKI 40 (277)
Q Consensus 9 l~v~nL~~~-~t~~~L~~~F~~~G~v~~v~~~~ 40 (277)
|.|.|||.. .+++-|..+.+.+|++..+....
T Consensus 107 Vri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 107 VRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred hhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 567799998 78888999999999999988743
No 318
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=21.71 E-value=1.2e+02 Score=28.51 Aligned_cols=38 Identities=5% Similarity=0.142 Sum_probs=33.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI 40 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~ 40 (277)
+..+..+|+.+|+.++.++.-.++|...--+..+.|..
T Consensus 298 g~~~~~~y~~G~stslp~~~Q~~~~r~ipGle~a~i~r 335 (618)
T PRK05192 298 GLDTNEVYPNGISTSLPEDVQLEMLRSIPGLENAEILR 335 (618)
T ss_pred CCCCCEEeccCccCCCCHHHHHHHHhcCcCccceeEee
Confidence 34678999999999999999999999988888888864
No 319
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=21.54 E-value=1.1e+02 Score=24.91 Aligned_cols=24 Identities=29% Similarity=0.213 Sum_probs=20.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccC
Q 023798 8 TLYVGNLPGDIREREVEDLFYKYG 31 (277)
Q Consensus 8 ~l~v~nL~~~~t~~~L~~~F~~~G 31 (277)
.+.|+|||++++..-|..++..+|
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~ 119 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPK 119 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCC
Confidence 477999999999999999996443
No 320
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=21.35 E-value=83 Score=19.30 Aligned_cols=13 Identities=23% Similarity=0.664 Sum_probs=9.9
Q ss_pred CCceEEEEEcChH
Q 023798 44 PPGYAFVEFEEAR 56 (277)
Q Consensus 44 ~~g~afV~f~~~~ 56 (277)
.+|||||+-.+.+
T Consensus 11 ~kgyGFI~~~~~~ 23 (66)
T PF00313_consen 11 EKGYGFITSDDGG 23 (66)
T ss_dssp TTTEEEEEETTSS
T ss_pred CCCceEEEEcccc
Confidence 3789999987643
No 321
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=20.89 E-value=3.6e+02 Score=20.03 Aligned_cols=34 Identities=9% Similarity=0.002 Sum_probs=24.0
Q ss_pred eeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCc
Q 023798 135 VCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS 169 (277)
Q Consensus 135 i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~ 169 (277)
|..+.++. ...||.||+....+++..++..+.+.
T Consensus 36 i~~i~vp~-~fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 36 IYAILAPP-ELKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred EEEEEccC-CCCcEEEEEEEChHHHHHHHhcCCCE
Confidence 44444433 46779999999888888888776553
No 322
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=20.78 E-value=2.8e+02 Score=21.82 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=35.9
Q ss_pred CCHHHHHHHHhccCc---eeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccC
Q 023798 18 IREREVEDLFYKYGP---IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (277)
Q Consensus 18 ~t~~~L~~~F~~~G~---v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~ 71 (277)
.+.+++.+....+|. |....+..-+..++=+...-.++++|..+...|=|..|.
T Consensus 25 ~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 25 TSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 467788777777664 444444445566664444455889999988888887775
No 323
>PRK09890 cold shock protein CspG; Provisional
Probab=20.34 E-value=78 Score=20.02 Aligned_cols=11 Identities=18% Similarity=0.682 Sum_probs=8.4
Q ss_pred CCceEEEEEcC
Q 023798 44 PPGYAFVEFEE 54 (277)
Q Consensus 44 ~~g~afV~f~~ 54 (277)
.+||+||+=.+
T Consensus 15 ~kGfGFI~~~~ 25 (70)
T PRK09890 15 DKGFGFITPDD 25 (70)
T ss_pred CCCcEEEecCC
Confidence 38999997654
No 324
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=20.11 E-value=1e+02 Score=25.35 Aligned_cols=65 Identities=14% Similarity=0.248 Sum_probs=42.5
Q ss_pred cceEEccCCCCC------------CCHHHHHHHHhhcCceeEEEEEecC---------CC-----CE---------EEEE
Q 023798 108 EYRVLVTGLPSS------------ASWQDLKDHMRRAGDVCFSQVFRDG---------SG-----TT---------GIVD 152 (277)
Q Consensus 108 ~~~l~v~~l~~~------------~~~~~l~~~f~~~g~i~~~~~~~~~---------~~-----~~---------afv~ 152 (277)
..+|++.+||-. .++..|...|..||.|..+.++... .. +| |||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 346777776643 3477899999999999998886431 11 12 4555
Q ss_pred EcChhhHHHHHHHcCCceec
Q 023798 153 YTNYDDMKHAIKKLDDSEFR 172 (277)
Q Consensus 153 f~~~~~a~~a~~~l~g~~~~ 172 (277)
|.....-..|+..|.|..+.
T Consensus 229 fmeykgfa~amdalr~~k~a 248 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKLA 248 (445)
T ss_pred HHHHHhHHHHHHHHhcchHH
Confidence 55555566677777776543
No 325
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=20.01 E-value=2.2e+02 Score=17.23 Aligned_cols=44 Identities=14% Similarity=0.103 Sum_probs=27.9
Q ss_pred CHHHHHHHHhhcC-ceeEEEEEecCCCCEEEEEEcChhhHHHHHH
Q 023798 121 SWQDLKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIK 164 (277)
Q Consensus 121 ~~~~l~~~f~~~g-~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~ 164 (277)
.-.++-++|.+.| .|.++........+..-+.+.+.+.+.++++
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~ 58 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALK 58 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHH
Confidence 5567888888877 7777776655444444444555556666655
Done!