Query 023798
Match_columns 277
No_of_seqs 337 out of 2537
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 12:58:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023798.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023798hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 3.9E-34 1.3E-38 227.3 16.0 158 4-178 13-175 (213)
2 3tyt_A Heterogeneous nuclear r 100.0 2.7E-33 9.3E-38 220.4 19.4 177 4-182 2-201 (205)
3 3md3_A Nuclear and cytoplasmic 100.0 1.8E-32 6.2E-37 209.2 19.4 154 7-177 1-160 (166)
4 1fxl_A Paraneoplastic encephal 100.0 3E-32 1E-36 208.1 19.7 155 5-178 1-162 (167)
5 1b7f_A Protein (SXL-lethal pro 100.0 3.4E-32 1.2E-36 208.2 19.9 150 5-173 2-158 (168)
6 1l3k_A Heterogeneous nuclear r 100.0 3.9E-32 1.3E-36 213.1 18.6 159 4-177 11-176 (196)
7 3pgw_A U1-A; protein-RNA compl 100.0 2.4E-31 8.2E-36 220.3 23.7 173 3-176 6-275 (282)
8 2adc_A Polypyrimidine tract-bi 100.0 3.2E-31 1.1E-35 212.8 21.0 172 3-177 31-221 (229)
9 2yh0_A Splicing factor U2AF 65 100.0 1.3E-30 4.5E-35 204.7 22.9 168 4-175 2-185 (198)
10 1qm9_A Polypyrimidine tract-bi 100.0 5.3E-31 1.8E-35 207.0 20.1 172 5-179 2-192 (198)
11 2qfj_A FBP-interacting repress 100.0 4.6E-31 1.6E-35 210.1 19.6 166 5-178 27-199 (216)
12 3nmr_A Cugbp ELAV-like family 100.0 5.2E-31 1.8E-35 202.9 18.4 151 5-173 2-163 (175)
13 2g4b_A Splicing factor U2AF 65 100.0 9.7E-31 3.3E-35 200.9 19.5 152 4-178 2-168 (172)
14 1fje_B Nucleolin RBD12, protei 100.0 5.7E-32 2E-36 208.4 12.4 154 3-175 10-165 (175)
15 2cjk_A Nuclear polyadenylated 100.0 3.5E-31 1.2E-35 202.4 11.6 151 4-176 1-158 (167)
16 2ghp_A U4/U6 snRNA-associated 100.0 2.1E-29 7.1E-34 209.6 17.1 159 5-176 116-283 (292)
17 3smz_A Protein raver-1, ribonu 100.0 3.7E-29 1.3E-33 207.3 18.6 157 4-176 93-256 (284)
18 3smz_A Protein raver-1, ribonu 100.0 7.6E-29 2.6E-33 205.4 20.0 143 5-176 21-167 (284)
19 3sde_A Paraspeckle component 1 100.0 3E-29 1E-33 205.1 16.9 139 5-171 21-162 (261)
20 2ghp_A U4/U6 snRNA-associated 100.0 6.5E-29 2.2E-33 206.6 17.5 146 4-176 39-189 (292)
21 4f25_A Polyadenylate-binding p 99.9 1.3E-24 4.4E-29 155.2 9.2 109 5-124 4-113 (115)
22 3pgw_S U1-70K; protein-RNA com 99.9 1.4E-22 4.7E-27 176.1 18.2 82 4-85 100-184 (437)
23 3lqv_A PRE-mRNA branch site pr 99.9 1.2E-22 4E-27 145.2 8.5 106 2-134 4-109 (115)
24 4fxv_A ELAV-like protein 1; RN 99.9 3.4E-22 1.2E-26 138.4 9.3 78 5-82 18-98 (99)
25 3pgw_S U1-70K; protein-RNA com 99.9 6.1E-22 2.1E-26 172.1 12.2 157 23-181 9-179 (437)
26 2hvz_A Splicing factor, argini 99.9 9.9E-22 3.4E-26 137.0 9.6 100 7-117 1-100 (101)
27 2wbr_A GW182, gawky, LD47780P; 99.9 2.5E-21 8.7E-26 127.7 10.7 74 4-80 5-78 (89)
28 1x4a_A Splicing factor, argini 99.9 6.9E-21 2.3E-25 134.6 12.0 83 3-85 19-101 (109)
29 1sjq_A Polypyrimidine tract-bi 99.9 2.9E-21 1E-25 133.5 9.3 81 2-85 12-94 (105)
30 2lxi_A RNA-binding protein 10; 99.9 1.5E-21 5E-26 133.2 7.7 79 6-84 1-84 (91)
31 2fy1_A RNA-binding motif prote 99.9 1.9E-20 6.5E-25 133.6 13.7 85 1-85 2-88 (116)
32 3s8s_A Histone-lysine N-methyl 99.8 4.2E-21 1.4E-25 135.5 9.3 79 4-82 4-85 (110)
33 1whw_A Hypothetical protein ri 99.8 3.1E-20 1.1E-24 128.9 12.8 83 3-85 5-90 (99)
34 3r27_A HnRNP L, heterogeneous 99.8 1.2E-20 4.1E-25 129.2 10.0 77 4-83 19-97 (100)
35 2a3j_A U1 small nuclear ribonu 99.8 1.6E-20 5.6E-25 135.4 11.0 80 4-83 27-110 (127)
36 2dnz_A Probable RNA-binding pr 99.8 4.5E-20 1.5E-24 127.0 12.7 82 4-85 3-87 (95)
37 2cqi_A Nucleolysin TIAR; RNA r 99.8 4.7E-20 1.6E-24 128.9 12.6 83 3-85 12-95 (103)
38 2dnm_A SRP46 splicing factor; 99.8 2.2E-20 7.5E-25 130.6 10.8 82 4-85 11-95 (103)
39 2x1f_A MRNA 3'-END-processing 99.8 2E-20 6.8E-25 129.1 10.3 80 5-84 1-83 (96)
40 2lkz_A RNA-binding protein 5; 99.8 5.4E-21 1.9E-25 130.9 7.3 79 4-82 7-94 (95)
41 2cpf_A RNA binding motif prote 99.8 1.7E-20 5.9E-25 129.9 9.9 83 3-85 2-90 (98)
42 2i2y_A Fusion protein consists 99.8 1.7E-20 6E-25 140.2 10.5 132 42-178 10-142 (150)
43 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.3E-20 7.7E-25 130.3 10.4 83 4-86 10-95 (102)
44 2ad9_A Polypyrimidine tract-bi 99.8 2.3E-20 7.7E-25 132.3 10.1 81 3-86 28-110 (119)
45 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.9E-20 6.6E-25 126.2 9.4 79 3-81 4-85 (85)
46 2dgx_A KIAA0430 protein; RRM d 99.8 3E-20 1E-24 128.1 10.5 80 5-84 8-91 (96)
47 2cq1_A PTB-like protein L; RRM 99.8 4.7E-20 1.6E-24 127.6 11.5 80 3-85 12-93 (101)
48 1x5u_A Splicing factor 3B subu 99.8 5.5E-20 1.9E-24 129.0 12.0 82 4-85 13-97 (105)
49 2dgs_A DAZ-associated protein 99.8 7.1E-20 2.4E-24 127.0 12.4 82 3-85 7-91 (99)
50 2d9p_A Polyadenylate-binding p 99.8 3.5E-20 1.2E-24 129.6 10.7 83 3-85 12-95 (103)
51 2kn4_A Immunoglobulin G-bindin 99.8 1E-19 3.5E-24 137.3 13.9 136 42-187 10-149 (158)
52 1nu4_A U1A RNA binding domain; 99.8 8.8E-21 3E-25 131.2 7.4 83 1-83 3-89 (97)
53 1x4d_A Matrin 3; structural ge 99.8 1.4E-20 4.9E-25 130.1 8.4 79 3-84 12-93 (102)
54 1x5s_A Cold-inducible RNA-bind 99.8 4.7E-20 1.6E-24 128.7 11.1 82 4-85 10-94 (102)
55 2dgv_A HnRNP M, heterogeneous 99.8 3.5E-20 1.2E-24 126.8 10.0 83 3-85 5-88 (92)
56 1x5t_A Splicing factor 3B subu 99.8 4.4E-20 1.5E-24 127.4 10.5 82 4-85 3-88 (96)
57 3md1_A Nuclear and cytoplasmic 99.8 3E-20 1E-24 124.6 9.4 78 6-83 1-81 (83)
58 2dgo_A Cytotoxic granule-assoc 99.8 9.2E-20 3.1E-24 130.1 12.5 84 4-87 13-99 (115)
59 2e5h_A Zinc finger CCHC-type a 99.8 4.6E-20 1.6E-24 126.7 10.5 78 4-81 14-94 (94)
60 2dgu_A Heterogeneous nuclear r 99.8 1.2E-19 4.1E-24 126.8 12.7 79 4-87 9-87 (103)
61 2cq3_A RNA-binding protein 9; 99.8 1.2E-19 4.1E-24 126.8 12.4 82 4-85 13-95 (103)
62 1wex_A Hypothetical protein (r 99.8 7.5E-20 2.6E-24 127.4 11.2 79 4-85 13-93 (104)
63 2cph_A RNA binding motif prote 99.8 1.1E-19 3.7E-24 128.0 12.1 82 4-85 13-99 (107)
64 2div_A TRNA selenocysteine ass 99.8 3.2E-20 1.1E-24 128.8 9.1 83 2-84 5-95 (99)
65 2do4_A Squamous cell carcinoma 99.8 6.8E-20 2.3E-24 127.4 10.7 81 4-84 15-97 (100)
66 1x4c_A Splicing factor, argini 99.8 1.6E-19 5.6E-24 127.2 12.7 78 4-85 13-95 (108)
67 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.9E-20 9.9E-25 125.9 8.5 79 4-82 4-85 (87)
68 2cq0_A Eukaryotic translation 99.8 3.3E-20 1.1E-24 129.7 9.0 82 4-85 13-97 (103)
69 2dnq_A RNA-binding protein 4B; 99.8 1.1E-19 3.9E-24 123.7 11.5 78 3-85 5-82 (90)
70 4a8x_A RNA-binding protein wit 99.8 5.8E-20 2E-24 124.6 9.8 80 4-83 2-85 (88)
71 1wi8_A EIF-4B, eukaryotic tran 99.8 9.2E-20 3.1E-24 127.6 11.0 81 3-85 12-96 (104)
72 2do0_A HnRNP M, heterogeneous 99.8 1.8E-19 6.2E-24 128.3 12.6 83 3-85 12-96 (114)
73 2cqd_A RNA-binding region cont 99.8 3.1E-19 1E-23 127.5 13.8 82 3-85 14-98 (116)
74 2cpz_A CUG triplet repeat RNA- 99.8 5.8E-20 2E-24 131.1 9.9 82 4-85 23-107 (115)
75 2dgt_A RNA-binding protein 30; 99.8 1.5E-19 5.1E-24 123.6 11.4 78 3-85 7-84 (92)
76 1p27_B RNA-binding protein 8A; 99.8 4.5E-20 1.6E-24 129.7 8.9 80 4-83 21-103 (106)
77 1x4h_A RNA-binding protein 28; 99.8 1.7E-19 5.7E-24 127.9 11.9 82 4-85 13-103 (111)
78 2dnh_A Bruno-like 5, RNA bindi 99.8 1.2E-19 4E-24 127.4 10.7 82 4-85 13-99 (105)
79 2dgp_A Bruno-like 4, RNA bindi 99.8 1.4E-19 4.8E-24 127.2 11.1 83 3-85 10-98 (106)
80 1why_A Hypothetical protein ri 99.8 1.5E-19 5.1E-24 124.9 11.0 77 4-83 15-93 (97)
81 2jvr_A Nucleolar protein 3; RN 99.8 6.7E-20 2.3E-24 128.9 9.3 79 4-83 26-105 (111)
82 2cqc_A Arginine/serine-rich sp 99.8 6E-20 2E-24 126.4 8.7 79 4-82 13-94 (95)
83 1x4f_A Matrin 3; structural ge 99.8 4.9E-20 1.7E-24 129.2 8.3 79 3-84 22-103 (112)
84 2dnp_A RNA-binding protein 14; 99.8 1.6E-19 5.5E-24 122.9 10.6 77 4-85 7-83 (90)
85 2ywk_A Putative RNA-binding pr 99.8 6.9E-20 2.3E-24 126.1 8.6 79 3-81 13-93 (95)
86 2kxn_B Transformer-2 protein h 99.8 6.7E-20 2.3E-24 133.1 9.0 81 4-84 44-127 (129)
87 1s79_A Lupus LA protein; RRM, 99.8 9.4E-20 3.2E-24 126.8 9.1 78 4-82 9-88 (103)
88 3p5t_L Cleavage and polyadenyl 99.8 1.5E-20 5.2E-25 128.0 4.6 78 7-84 2-84 (90)
89 2cq2_A Hypothetical protein LO 99.8 1.7E-19 5.7E-24 126.5 9.9 80 2-84 21-107 (114)
90 1x4g_A Nucleolysin TIAR; struc 99.8 3.2E-19 1.1E-23 126.0 11.3 79 4-85 23-101 (109)
91 1oo0_B CG8781-PA, drosophila Y 99.8 1.2E-19 4E-24 128.4 9.1 80 4-83 24-106 (110)
92 2dng_A Eukaryotic translation 99.8 2.1E-19 7.2E-24 125.6 10.3 81 3-85 12-95 (103)
93 2nlw_A Eukaryotic translation 99.8 2E-19 7E-24 126.0 10.2 80 4-83 13-100 (105)
94 3ns6_A Eukaryotic translation 99.8 3.8E-20 1.3E-24 128.5 6.3 78 5-82 5-92 (100)
95 2dhg_A TRNA selenocysteine ass 99.8 2E-19 7E-24 125.9 10.1 83 3-85 6-92 (104)
96 2khc_A Testis-specific RNP-typ 99.8 1.2E-19 4.2E-24 130.0 9.0 79 3-81 37-118 (118)
97 2cpx_A Hypothetical protein FL 99.8 2.2E-19 7.7E-24 128.0 10.4 81 4-85 23-107 (115)
98 3ex7_B RNA-binding protein 8A; 99.8 1.6E-19 5.3E-24 131.0 9.6 83 4-86 20-105 (126)
99 3ucg_A Polyadenylate-binding p 99.8 2.6E-19 9E-24 121.6 10.1 78 5-83 5-85 (89)
100 2jrs_A RNA-binding protein 39; 99.8 1.3E-19 4.3E-24 127.6 8.8 79 4-82 24-105 (108)
101 2la6_A RNA-binding protein FUS 99.8 1.5E-19 5E-24 125.4 9.0 79 3-81 10-99 (99)
102 2cpi_A CCR4-NOT transcription 99.8 7.1E-20 2.4E-24 129.7 7.5 81 4-84 13-102 (111)
103 3ulh_A THO complex subunit 4; 99.8 1.3E-19 4.5E-24 127.6 8.9 78 4-81 27-106 (107)
104 2cpe_A RNA-binding protein EWS 99.8 2.2E-19 7.7E-24 127.6 10.1 82 4-85 13-105 (113)
105 1whx_A Hypothetical protein ri 99.8 1.5E-19 5E-24 127.9 9.1 78 4-84 8-85 (111)
106 2xnq_A Nuclear polyadenylated 99.8 3.1E-19 1.1E-23 123.1 10.5 75 3-82 19-94 (97)
107 2cpj_A Non-POU domain-containi 99.8 3.2E-19 1.1E-23 123.7 10.6 78 4-84 13-90 (99)
108 2fc9_A NCL protein; structure 99.8 2.5E-19 8.5E-24 124.7 9.8 80 4-84 13-92 (101)
109 2krb_A Eukaryotic translation 99.8 9E-20 3.1E-24 121.6 7.2 72 6-77 1-80 (81)
110 1u6f_A Tcubp1, RNA-binding pro 99.8 4.3E-19 1.5E-23 130.9 11.6 83 4-86 40-125 (139)
111 2err_A Ataxin-2-binding protei 99.8 2E-19 6.8E-24 126.9 9.2 79 4-82 27-106 (109)
112 2cpd_A Apobec-1 stimulating pr 99.8 6.2E-19 2.1E-23 122.2 11.5 76 4-84 13-90 (99)
113 3s7r_A Heterogeneous nuclear r 99.8 2.9E-19 1E-23 120.9 9.6 77 3-80 8-87 (87)
114 2kvi_A Nuclear polyadenylated 99.8 1.8E-19 6E-24 124.3 8.6 77 4-85 8-85 (96)
115 2rs2_A Musashi-1, RNA-binding 99.8 5.6E-19 1.9E-23 124.5 11.1 80 4-84 23-105 (109)
116 2dis_A Unnamed protein product 99.8 8.5E-19 2.9E-23 123.8 12.0 83 3-85 5-94 (109)
117 2ytc_A PRE-mRNA-splicing facto 99.8 2.6E-19 9.1E-24 120.5 9.0 75 4-81 10-85 (85)
118 2jvo_A Nucleolar protein 3; nu 99.8 3E-19 1E-23 125.6 9.4 76 4-84 29-104 (108)
119 2dh8_A DAZ-associated protein 99.8 2E-19 7E-24 126.1 8.5 82 3-85 13-97 (105)
120 2kt5_A RNA and export factor-b 99.8 8.3E-19 2.8E-23 126.8 11.9 82 4-85 33-116 (124)
121 2cqh_A IGF-II mRNA-binding pro 99.8 2.5E-19 8.4E-24 122.8 8.2 79 3-85 5-85 (93)
122 2e5j_A Methenyltetrahydrofolat 99.8 3.2E-19 1.1E-23 123.2 8.8 77 5-83 18-94 (97)
123 2mss_A Protein (musashi1); RNA 99.8 2.1E-19 7.2E-24 118.0 7.4 72 8-80 1-75 (75)
124 3n9u_C Cleavage and polyadenyl 99.8 2.9E-19 9.8E-24 133.9 8.9 77 5-81 54-135 (156)
125 1p1t_A Cleavage stimulation fa 99.8 1.6E-19 5.5E-24 126.4 7.1 80 5-84 7-89 (104)
126 2lea_A Serine/arginine-rich sp 99.8 3.1E-19 1.1E-23 130.7 8.8 82 4-85 45-129 (135)
127 2m2b_A RNA-binding protein 10; 99.8 3.9E-19 1.3E-23 129.7 9.2 81 3-84 20-109 (131)
128 1h2v_Z 20 kDa nuclear CAP bind 99.8 6.1E-19 2.1E-23 132.7 10.4 82 4-85 37-121 (156)
129 1x4e_A RNA binding motif, sing 99.8 6.4E-20 2.2E-24 123.6 4.4 78 3-80 2-82 (85)
130 2j76_E EIF-4B, EIF4B, eukaryot 99.8 2.7E-19 9.4E-24 124.2 7.7 77 4-82 17-97 (100)
131 2kn4_A Immunoglobulin G-bindin 99.8 1.1E-18 3.6E-23 131.7 11.3 81 5-85 69-152 (158)
132 2la4_A Nuclear and cytoplasmic 99.8 3.5E-19 1.2E-23 124.0 8.0 75 5-82 26-100 (101)
133 2cq4_A RNA binding motif prote 99.8 6.1E-19 2.1E-23 125.5 9.3 77 5-82 24-103 (114)
134 1wf1_A RNA-binding protein RAL 99.8 7.7E-19 2.6E-23 124.2 9.6 75 5-84 26-101 (110)
135 2cqp_A RNA-binding protein 12; 99.8 1.7E-19 5.8E-24 124.9 6.1 79 4-82 13-94 (98)
136 1uaw_A Mouse-musashi-1; RNP-ty 99.8 3E-19 1E-23 117.9 7.0 73 7-80 1-76 (77)
137 1fjc_A Nucleolin RBD2, protein 99.8 2.2E-19 7.6E-24 123.8 6.6 78 4-83 14-91 (96)
138 2fc8_A NCL protein; structure 99.8 6.4E-19 2.2E-23 122.9 9.0 82 4-85 13-94 (102)
139 2ek1_A RNA-binding protein 12; 99.8 1.3E-19 4.5E-24 124.7 5.3 77 5-81 14-93 (95)
140 2cqg_A TDP-43, TAR DNA-binding 99.8 1.8E-18 6.2E-23 120.8 10.9 81 3-85 12-95 (103)
141 1wg5_A Heterogeneous nuclear r 99.8 1.9E-18 6.5E-23 120.8 10.9 79 4-83 13-94 (104)
142 3egn_A RNA-binding protein 40; 99.8 3.3E-19 1.1E-23 132.2 7.2 81 4-84 43-131 (143)
143 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.2E-18 4E-23 128.7 10.1 77 4-80 61-140 (140)
144 1x4b_A Heterogeneous nuclear r 99.8 1.9E-18 6.4E-23 123.4 10.8 80 5-85 26-108 (116)
145 2dgw_A Probable RNA-binding pr 99.8 1.4E-18 4.8E-23 118.5 9.6 78 4-83 8-87 (91)
146 2ki2_A SS-DNA binding protein 99.8 1.9E-19 6.4E-24 122.6 5.0 77 7-84 2-81 (90)
147 1rk8_A CG8781-PA, CG8781-PA pr 99.8 6.7E-19 2.3E-23 133.6 8.4 82 4-85 70-154 (165)
148 3beg_B Splicing factor, argini 99.8 5.7E-19 2E-23 125.7 7.4 78 105-185 13-91 (115)
149 2jwn_A Embryonic polyadenylate 99.8 1.6E-18 5.5E-23 125.3 9.8 79 5-84 35-116 (124)
150 1wg1_A KIAA1579 protein, homol 99.8 6.9E-19 2.4E-23 119.2 7.4 77 3-83 2-78 (88)
151 2i2y_A Fusion protein consists 99.8 1.5E-18 5.1E-23 129.7 9.8 78 4-83 71-148 (150)
152 2diu_A KIAA0430 protein; struc 99.8 3.1E-18 1E-22 114.0 10.0 75 4-85 6-86 (96)
153 3beg_B Splicing factor, argini 99.8 1.5E-18 5.2E-23 123.5 9.3 76 4-83 14-94 (115)
154 2cpy_A RNA-binding protein 12; 99.8 9.6E-19 3.3E-23 124.4 8.0 78 4-82 13-93 (114)
155 1x5p_A Negative elongation fac 99.8 5.8E-18 2E-22 116.8 11.7 77 4-85 13-89 (97)
156 1x5o_A RNA binding motif, sing 99.8 1.8E-18 6.1E-23 123.1 9.1 79 4-82 23-111 (114)
157 2e5g_A U6 snRNA-specific termi 99.8 3.9E-18 1.3E-22 117.0 10.4 78 4-84 6-83 (94)
158 1fj7_A Nucleolin RBD1, protein 99.8 3.1E-19 1.1E-23 124.2 4.7 80 4-84 15-96 (101)
159 1iqt_A AUF1, heterogeneous nuc 99.8 9E-19 3.1E-23 115.0 6.6 72 8-80 1-75 (75)
160 1wez_A HnRNP H', FTP-3, hetero 99.8 1.6E-18 5.5E-23 120.5 8.1 79 4-84 13-93 (102)
161 2e44_A Insulin-like growth fac 99.8 3.5E-18 1.2E-22 117.7 9.7 78 5-83 14-92 (96)
162 2hgl_A HNRPF protein, heteroge 99.8 1.9E-18 6.6E-23 126.0 8.7 77 4-81 42-123 (136)
163 2db1_A Heterogeneous nuclear r 99.8 1E-18 3.4E-23 125.0 7.0 77 4-81 15-96 (118)
164 2f3j_A RNA and export factor b 99.8 3.2E-18 1.1E-22 131.0 10.0 80 4-83 86-167 (177)
165 3q2s_C Cleavage and polyadenyl 99.8 2.1E-18 7.1E-23 137.5 8.5 77 5-81 67-148 (229)
166 1wel_A RNA-binding protein 12; 99.7 2.2E-18 7.5E-23 124.5 7.8 77 4-81 23-102 (124)
167 1sjr_A Polypyrimidine tract-bi 99.7 6.7E-18 2.3E-22 125.6 10.4 77 7-84 47-125 (164)
168 1x4c_A Splicing factor, argini 99.7 4.2E-17 1.4E-21 114.8 14.1 82 103-187 10-92 (108)
169 3zzy_A Polypyrimidine tract-bi 99.7 6.4E-18 2.2E-22 121.2 9.4 75 8-84 30-107 (130)
170 2lmi_A GRSF-1, G-rich sequence 99.7 2.2E-18 7.7E-23 121.1 6.3 77 4-81 9-90 (107)
171 2dnn_A RNA-binding protein 12; 99.7 8.7E-18 3E-22 117.8 9.2 74 6-81 16-91 (109)
172 3d2w_A TAR DNA-binding protein 99.7 9.8E-18 3.3E-22 113.6 9.1 74 4-83 9-84 (89)
173 2e5i_A Heterogeneous nuclear r 99.7 1.4E-17 4.9E-22 118.9 10.4 77 5-84 22-103 (124)
174 2hzc_A Splicing factor U2AF 65 99.7 6.4E-18 2.2E-22 114.2 8.0 73 3-79 3-86 (87)
175 1wf0_A TDP-43, TAR DNA-binding 99.7 7.4E-18 2.5E-22 114.1 7.9 79 3-85 2-80 (88)
176 2pe8_A Splicing factor 45; RRM 99.7 1.7E-17 5.7E-22 115.6 9.4 80 2-81 4-92 (105)
177 2hgn_A Heterogeneous nuclear r 99.7 3.3E-18 1.1E-22 125.1 6.1 79 4-84 44-124 (139)
178 2dha_A FLJ20171 protein; RRM d 99.7 2.5E-18 8.4E-23 123.2 5.3 77 4-81 21-103 (123)
179 2lcw_A RNA-binding protein FUS 99.6 3.4E-19 1.1E-23 127.3 0.0 82 3-84 4-96 (116)
180 2hgm_A HNRPF protein, heteroge 99.7 1.3E-17 4.4E-22 119.7 8.1 76 4-81 40-119 (126)
181 2bz2_A Negative elongation fac 99.7 2.2E-17 7.5E-22 118.4 9.1 76 4-84 37-112 (121)
182 2xs2_A Deleted in azoospermia- 99.7 7.1E-18 2.4E-22 117.5 5.7 77 5-83 8-86 (102)
183 1rk8_A CG8781-PA, CG8781-PA pr 99.7 7.6E-17 2.6E-21 122.2 11.3 129 50-178 11-146 (165)
184 2dnl_A Cytoplasmic polyadenyla 99.7 9.4E-17 3.2E-21 114.1 10.9 74 4-80 6-85 (114)
185 2j8a_A Histone-lysine N-methyl 99.7 3.1E-17 1E-21 115.4 7.2 76 7-82 3-95 (136)
186 2qfj_A FBP-interacting repress 99.7 8.5E-17 2.9E-21 127.4 10.4 82 4-85 123-207 (216)
187 4f02_A Polyadenylate-binding p 99.7 4.8E-17 1.6E-21 128.7 8.9 78 5-82 102-180 (213)
188 3md3_A Nuclear and cytoplasmic 99.7 7.4E-17 2.5E-21 122.3 9.3 78 4-81 85-165 (166)
189 2dit_A HIV TAT specific factor 99.7 2.6E-16 8.9E-21 111.4 10.6 80 4-84 13-103 (112)
190 2lea_A Serine/arginine-rich sp 99.7 6.2E-17 2.1E-21 118.4 7.5 113 46-178 5-121 (135)
191 4fxv_A ELAV-like protein 1; RN 99.7 3.4E-16 1.2E-20 108.1 10.6 70 107-176 18-91 (99)
192 3u1l_A PRE-mRNA-splicing facto 99.7 7E-17 2.4E-21 128.1 7.8 78 4-84 132-230 (240)
193 2g4b_A Splicing factor U2AF 65 99.7 1.1E-16 3.8E-21 122.1 8.3 76 5-80 93-171 (172)
194 2yh0_A Splicing factor U2AF 65 99.7 1.8E-16 6.1E-21 123.8 9.5 81 4-84 112-195 (198)
195 1fje_B Nucleolin RBD12, protei 99.7 1.2E-16 4E-21 122.5 8.2 76 5-82 98-173 (175)
196 2jvr_A Nucleolar protein 3; RN 99.7 1.9E-16 6.6E-21 111.2 8.5 75 107-185 27-102 (111)
197 2cjk_A Nuclear polyadenylated 99.7 1.1E-16 3.8E-21 121.6 7.8 77 5-82 86-165 (167)
198 1b7f_A Protein (SXL-lethal pro 99.7 3.9E-16 1.3E-20 118.6 9.2 77 4-80 87-168 (168)
199 2fy1_A RNA-binding motif prote 99.7 1.9E-15 6.3E-20 107.6 12.1 72 107-178 6-80 (116)
200 3nmr_A Cugbp ELAV-like family 99.7 3.3E-16 1.1E-20 119.7 8.8 76 5-80 94-174 (175)
201 3v4m_A Splicing factor U2AF 65 99.6 5.6E-16 1.9E-20 107.9 8.5 79 3-81 2-95 (105)
202 3ex7_B RNA-binding protein 8A; 99.6 1E-15 3.5E-20 110.7 10.1 77 104-180 18-98 (126)
203 1x4a_A Splicing factor, argini 99.6 6.1E-15 2.1E-19 103.8 13.8 82 103-188 17-99 (109)
204 1l3k_A Heterogeneous nuclear r 99.6 5E-16 1.7E-20 121.0 9.1 80 5-85 103-185 (196)
205 1sjq_A Polypyrimidine tract-bi 99.6 1.4E-15 5E-20 104.9 10.3 77 105-187 13-91 (105)
206 2voo_A Lupus LA protein; RNA-b 99.6 6E-16 2E-20 120.1 9.2 77 6-83 109-187 (193)
207 1fxl_A Paraneoplastic encephal 99.6 7.5E-16 2.6E-20 116.8 9.0 76 5-80 87-167 (167)
208 2dnm_A SRP46 splicing factor; 99.6 2.1E-15 7.3E-20 105.1 10.5 74 103-176 8-85 (103)
209 2cq3_A RNA-binding protein 9; 99.6 8.9E-15 3E-19 101.9 13.5 81 103-187 10-92 (103)
210 2cqi_A Nucleolysin TIAR; RNA r 99.6 1E-14 3.5E-19 101.6 13.7 81 104-188 11-93 (103)
211 3pgw_A U1-A; protein-RNA compl 99.6 1.2E-15 4E-20 125.9 10.3 75 5-81 206-281 (282)
212 4f25_A Polyadenylate-binding p 99.6 1.8E-15 6.2E-20 107.5 9.8 69 108-176 5-75 (115)
213 3s8s_A Histone-lysine N-methyl 99.6 3.2E-15 1.1E-19 105.2 10.9 73 107-179 5-81 (110)
214 2d9p_A Polyadenylate-binding p 99.6 3.2E-15 1.1E-19 104.1 10.6 76 103-178 10-87 (103)
215 1whw_A Hypothetical protein ri 99.6 6.1E-15 2.1E-19 101.9 11.9 79 106-188 6-88 (99)
216 2dnq_A RNA-binding protein 4B; 99.6 5.9E-15 2E-19 100.1 11.4 76 105-188 5-80 (90)
217 2dgt_A RNA-binding protein 30; 99.6 8.9E-15 3E-19 99.7 11.9 77 104-188 6-82 (92)
218 1qm9_A Polypyrimidine tract-bi 99.6 1.4E-15 4.7E-20 118.9 8.9 77 4-82 118-196 (198)
219 2dgu_A Heterogeneous nuclear r 99.6 8.8E-15 3E-19 101.9 12.1 74 106-187 9-82 (103)
220 2cq0_A Eukaryotic translation 99.6 8.4E-15 2.9E-19 102.0 11.9 81 104-188 11-95 (103)
221 2dnz_A Probable RNA-binding pr 99.6 5.9E-15 2E-19 101.2 11.0 70 107-176 4-77 (95)
222 2cpz_A CUG triplet repeat RNA- 99.6 1.9E-14 6.6E-19 102.2 13.9 81 104-188 21-105 (115)
223 1x5s_A Cold-inducible RNA-bind 99.6 6.9E-15 2.4E-19 102.2 11.3 77 104-180 8-88 (102)
224 2wbr_A GW182, gawky, LD47780P; 99.6 4.8E-15 1.6E-19 97.7 9.6 68 108-177 7-74 (89)
225 2dgs_A DAZ-associated protein 99.6 7.5E-15 2.6E-19 101.5 11.2 74 103-177 5-82 (99)
226 2dgo_A Cytotoxic granule-assoc 99.6 2.8E-14 9.6E-19 101.4 14.4 81 103-187 10-94 (115)
227 2cqb_A Peptidyl-prolyl CIS-tra 99.6 5.1E-15 1.7E-19 102.9 10.3 80 105-188 9-92 (102)
228 2dgx_A KIAA0430 protein; RRM d 99.6 7.7E-15 2.6E-19 100.8 11.0 79 105-187 6-89 (96)
229 2adc_A Polypyrimidine tract-bi 99.6 3.2E-15 1.1E-19 119.5 10.4 76 5-82 150-227 (229)
230 3tyt_A Heterogeneous nuclear r 99.6 1.1E-15 3.7E-20 119.9 7.4 76 5-80 122-204 (205)
231 1x4h_A RNA-binding protein 28; 99.6 1.4E-14 4.9E-19 102.2 12.6 82 103-188 10-101 (111)
232 4a8x_A RNA-binding protein wit 99.6 4.8E-15 1.6E-19 100.1 9.6 72 108-179 4-80 (88)
233 1x4d_A Matrin 3; structural ge 99.6 3.5E-15 1.2E-19 102.9 9.0 69 106-176 13-84 (102)
234 2e5j_A Methenyltetrahydrofolat 99.6 6.9E-15 2.4E-19 101.2 10.5 74 104-178 15-88 (97)
235 2cpf_A RNA binding motif prote 99.6 7.4E-15 2.5E-19 101.3 10.7 78 107-188 4-88 (98)
236 1wf1_A RNA-binding protein RAL 99.6 4.9E-15 1.7E-19 104.5 10.0 68 106-177 25-93 (110)
237 2do0_A HnRNP M, heterogeneous 99.6 3.8E-14 1.3E-18 100.5 14.5 75 104-178 11-88 (114)
238 2div_A TRNA selenocysteine ass 99.6 1.1E-14 3.7E-19 100.7 11.3 83 106-188 7-94 (99)
239 1wi8_A EIF-4B, eukaryotic tran 99.6 1.3E-14 4.5E-19 101.2 11.7 79 103-187 10-93 (104)
240 2e5h_A Zinc finger CCHC-type a 99.6 1E-14 3.4E-19 99.8 10.7 75 103-177 11-89 (94)
241 2cph_A RNA binding motif prote 99.6 1.5E-14 5.2E-19 101.4 11.7 75 103-177 10-90 (107)
242 2cqc_A Arginine/serine-rich sp 99.6 2.7E-14 9.1E-19 97.9 12.7 73 103-175 10-86 (95)
243 2dnp_A RNA-binding protein 14; 99.6 1.1E-14 3.8E-19 98.7 10.5 75 105-187 6-80 (90)
244 3r27_A HnRNP L, heterogeneous 99.6 9.8E-15 3.4E-19 99.7 10.1 68 105-174 18-87 (100)
245 1x4g_A Nucleolysin TIAR; struc 99.6 1.4E-14 4.7E-19 102.0 11.3 77 106-188 23-99 (109)
246 2dgp_A Bruno-like 4, RNA bindi 99.6 1.1E-14 3.6E-19 102.0 10.6 72 104-175 9-87 (106)
247 2d9o_A DNAJ (HSP40) homolog, s 99.6 2.4E-14 8.1E-19 98.4 11.9 76 5-84 9-91 (100)
248 3tht_A Alkylated DNA repair pr 99.6 3.4E-15 1.2E-19 124.6 9.3 77 2-81 14-97 (345)
249 2dng_A Eukaryotic translation 99.6 3.4E-14 1.2E-18 98.9 12.7 79 103-187 10-92 (103)
250 1why_A Hypothetical protein ri 99.6 1.6E-14 5.5E-19 99.4 10.9 70 105-176 14-85 (97)
251 2cq1_A PTB-like protein L; RRM 99.6 3.2E-14 1.1E-18 98.2 12.3 71 104-176 11-83 (101)
252 1x5u_A Splicing factor 3B subu 99.6 2.2E-14 7.4E-19 100.3 11.6 74 103-176 10-87 (105)
253 1x5t_A Splicing factor 3B subu 99.6 1.2E-14 3.9E-19 99.9 9.8 77 107-187 4-85 (96)
254 3mdf_A Peptidyl-prolyl CIS-tra 99.6 1.4E-14 4.9E-19 97.1 9.9 72 106-177 5-80 (85)
255 2hvz_A Splicing factor, argini 99.6 8E-15 2.7E-19 101.7 8.8 67 109-176 1-67 (101)
256 3bs9_A Nucleolysin TIA-1 isofo 99.6 1.7E-14 5.9E-19 97.1 10.3 72 107-178 5-80 (87)
257 2dgv_A HnRNP M, heterogeneous 99.6 1.7E-14 6E-19 98.2 10.2 74 105-178 5-80 (92)
258 2do4_A Squamous cell carcinoma 99.6 5.3E-14 1.8E-18 97.4 12.7 79 105-187 14-95 (100)
259 2jvo_A Nucleolar protein 3; nu 99.6 1.5E-14 5E-19 101.5 9.9 76 104-187 27-102 (108)
260 2dnh_A Bruno-like 5, RNA bindi 99.6 3.2E-14 1.1E-18 99.4 11.6 68 106-173 13-83 (105)
261 2x1f_A MRNA 3'-END-processing 99.6 1.5E-14 5.3E-19 99.3 9.8 69 108-176 2-74 (96)
262 2dh8_A DAZ-associated protein 99.6 6.8E-14 2.3E-18 97.7 13.1 81 103-188 11-95 (105)
263 2cpd_A Apobec-1 stimulating pr 99.6 7.6E-14 2.6E-18 96.3 13.1 76 105-188 12-89 (99)
264 2ad9_A Polypyrimidine tract-bi 99.6 1.4E-14 5E-19 102.4 9.5 70 105-176 28-99 (119)
265 3md1_A Nuclear and cytoplasmic 99.6 3.1E-14 1.1E-18 95.0 10.5 68 109-176 2-73 (83)
266 2khc_A Testis-specific RNP-typ 99.6 5.1E-14 1.7E-18 100.5 12.3 76 103-178 35-114 (118)
267 2kvi_A Nuclear polyadenylated 99.6 1.9E-14 6.5E-19 98.8 9.6 73 106-182 8-81 (96)
268 1u6f_A Tcubp1, RNA-binding pro 99.6 1.7E-13 5.7E-18 100.8 15.3 82 103-188 37-122 (139)
269 1wex_A Hypothetical protein (r 99.6 2.2E-14 7.4E-19 99.6 9.9 70 105-176 12-83 (104)
270 2kxn_B Transformer-2 protein h 99.6 1.7E-14 5.9E-19 104.5 9.7 72 104-175 42-117 (129)
271 2cpi_A CCR4-NOT transcription 99.6 2.1E-14 7.2E-19 101.3 9.9 80 105-188 12-101 (111)
272 3ulh_A THO complex subunit 4; 99.6 4.1E-14 1.4E-18 99.2 11.3 77 103-179 24-103 (107)
273 2cqh_A IGF-II mRNA-binding pro 99.6 1.3E-14 4.6E-19 99.0 8.5 76 106-188 6-83 (93)
274 3ue2_A Poly(U)-binding-splicin 99.6 3.2E-15 1.1E-19 106.1 5.5 78 4-81 18-107 (118)
275 2cpj_A Non-POU domain-containi 99.6 3.5E-14 1.2E-18 98.1 10.6 70 105-176 12-81 (99)
276 2la6_A RNA-binding protein FUS 99.6 4.7E-14 1.6E-18 97.4 11.3 76 103-178 8-95 (99)
277 1p27_B RNA-binding protein 8A; 99.6 4.5E-14 1.6E-18 98.8 11.3 75 105-179 20-98 (106)
278 2ywk_A Putative RNA-binding pr 99.6 3.2E-14 1.1E-18 97.5 10.4 74 103-176 11-87 (95)
279 2ytc_A PRE-mRNA-splicing facto 99.6 3.6E-14 1.2E-18 95.1 10.4 73 103-177 7-80 (85)
280 1h2v_Z 20 kDa nuclear CAP bind 99.6 4.5E-14 1.5E-18 105.9 12.0 74 106-179 37-114 (156)
281 2cqd_A RNA-binding region cont 99.6 7.9E-14 2.7E-18 99.2 12.7 75 103-178 12-90 (116)
282 2cpe_A RNA-binding protein EWS 99.6 4.6E-14 1.6E-18 100.0 11.3 81 104-188 11-103 (113)
283 2fc9_A NCL protein; structure 99.6 2.4E-14 8.1E-19 99.3 9.6 81 104-188 11-91 (101)
284 2cpx_A Hypothetical protein FL 99.6 4.5E-14 1.5E-18 100.3 11.3 71 106-176 23-97 (115)
285 2dhg_A TRNA selenocysteine ass 99.6 5.2E-14 1.8E-18 98.1 11.3 72 105-176 6-82 (104)
286 2kt5_A RNA and export factor-b 99.6 1.2E-13 4.1E-18 99.5 13.4 78 103-180 30-110 (124)
287 1s79_A Lupus LA protein; RRM, 99.5 3.1E-14 1.1E-18 98.8 9.8 75 105-180 8-85 (103)
288 2lkz_A RNA-binding protein 5; 99.5 1.4E-14 4.7E-19 98.9 7.5 72 104-175 5-86 (95)
289 2lxi_A RNA-binding protein 10; 99.5 8.1E-15 2.8E-19 99.5 6.3 75 109-187 2-82 (91)
290 1jmt_A Splicing factor U2AF 35 99.5 1.6E-15 5.3E-20 105.5 2.7 69 12-80 21-103 (104)
291 1oo0_B CG8781-PA, drosophila Y 99.5 4.8E-14 1.6E-18 99.3 10.4 73 104-176 22-98 (110)
292 2err_A Ataxin-2-binding protei 99.5 3E-14 1E-18 100.2 9.2 75 103-177 24-100 (109)
293 1whx_A Hypothetical protein ri 99.5 2E-14 6.9E-19 101.4 8.3 74 105-180 7-80 (111)
294 3s6e_A RNA-binding protein 39; 99.5 3E-14 1E-18 100.3 9.0 77 4-81 5-91 (114)
295 2e44_A Insulin-like growth fac 99.5 4.5E-14 1.5E-18 97.0 9.7 75 105-179 12-87 (96)
296 2la4_A Nuclear and cytoplasmic 99.5 4.1E-14 1.4E-18 98.1 9.6 68 106-175 25-92 (101)
297 1x4e_A RNA binding motif, sing 99.5 8.4E-15 2.9E-19 98.2 5.7 70 107-176 4-77 (85)
298 2jrs_A RNA-binding protein 39; 99.5 5.8E-14 2E-18 98.5 10.3 74 103-176 21-98 (108)
299 1sjr_A Polypyrimidine tract-bi 99.5 5.4E-14 1.8E-18 104.6 10.5 67 107-173 45-111 (164)
300 1x4b_A Heterogeneous nuclear r 99.5 1.1E-13 3.9E-18 98.4 11.8 78 106-188 25-106 (116)
301 2xnq_A Nuclear polyadenylated 99.5 6.7E-14 2.3E-18 96.2 10.1 70 104-177 18-88 (97)
302 2cqp_A RNA-binding protein 12; 99.5 4.9E-14 1.7E-18 97.1 9.3 74 105-178 12-89 (98)
303 3ns6_A Eukaryotic translation 99.5 2.7E-14 9.4E-19 98.7 7.9 73 107-179 5-88 (100)
304 2hgn_A Heterogeneous nuclear r 99.5 7.3E-15 2.5E-19 107.3 5.0 114 46-179 2-118 (139)
305 3s7r_A Heterogeneous nuclear r 99.5 8.4E-14 2.9E-18 93.7 9.9 71 105-176 8-82 (87)
306 3p5t_L Cleavage and polyadenyl 99.5 2E-14 6.7E-19 97.5 6.7 68 109-176 2-75 (90)
307 1x5p_A Negative elongation fac 99.5 3.4E-13 1.1E-17 92.7 13.0 76 105-188 12-87 (97)
308 1x4f_A Matrin 3; structural ge 99.5 5.1E-14 1.8E-18 98.5 8.9 73 105-179 22-97 (112)
309 2krb_A Eukaryotic translation 99.5 2.1E-14 7.1E-19 95.4 6.6 66 109-174 2-75 (81)
310 2e5g_A U6 snRNA-specific termi 99.5 1.7E-13 5.8E-18 93.6 11.3 67 107-176 7-74 (94)
311 2m2b_A RNA-binding protein 10; 99.5 5.1E-14 1.7E-18 102.4 9.1 74 105-179 20-103 (131)
312 2cq4_A RNA binding motif prote 99.5 1.1E-13 3.7E-18 98.2 10.6 71 105-176 22-96 (114)
313 2a3j_A U1 small nuclear ribonu 99.5 8.1E-14 2.8E-18 100.3 9.8 74 105-178 26-104 (127)
314 2cqg_A TDP-43, TAR DNA-binding 99.5 5.3E-13 1.8E-17 92.8 13.8 79 104-188 11-93 (103)
315 3ucg_A Polyadenylate-binding p 99.5 1.1E-13 3.9E-18 93.5 9.9 75 107-186 5-83 (89)
316 3sde_A Paraspeckle component 1 99.5 2.9E-14 9.8E-19 116.2 8.1 80 4-83 94-179 (261)
317 3lqv_A PRE-mRNA branch site pr 99.5 1.2E-13 4.3E-18 98.0 10.3 75 106-180 6-81 (115)
318 2e5i_A Heterogeneous nuclear r 99.5 2.8E-13 9.7E-18 96.6 12.1 75 108-186 25-100 (124)
319 2ek1_A RNA-binding protein 12; 99.5 3.9E-14 1.3E-18 97.0 7.1 71 106-176 13-87 (95)
320 1wez_A HnRNP H', FTP-3, hetero 99.5 1.3E-13 4.3E-18 95.6 9.8 75 103-179 10-87 (102)
321 3n9u_C Cleavage and polyadenyl 99.5 1.4E-13 4.8E-18 102.9 10.6 72 107-178 54-131 (156)
322 1p1t_A Cleavage stimulation fa 99.5 7.3E-14 2.5E-18 97.3 8.3 73 106-178 6-82 (104)
323 2dgw_A Probable RNA-binding pr 99.5 3.9E-13 1.3E-17 91.2 11.6 71 104-176 6-79 (91)
324 2jwn_A Embryonic polyadenylate 99.5 1.6E-13 5.5E-18 98.8 9.9 75 107-186 35-113 (124)
325 2cq2_A Hypothetical protein LO 99.5 9.2E-14 3.2E-18 97.3 8.2 64 106-171 23-88 (114)
326 2dnn_A RNA-binding protein 12; 99.5 1.7E-13 5.9E-18 95.9 9.6 71 104-176 12-85 (109)
327 2rs2_A Musashi-1, RNA-binding 99.5 1.8E-13 6E-18 96.2 9.7 77 105-186 22-102 (109)
328 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 2.2E-13 7.7E-18 100.2 10.7 74 103-176 58-135 (140)
329 3zzy_A Polypyrimidine tract-bi 99.5 2.3E-13 8E-18 97.4 10.3 67 107-174 27-94 (130)
330 1fjc_A Nucleolin RBD2, protein 99.5 9.9E-14 3.4E-18 95.2 7.8 78 105-187 13-90 (96)
331 2nlw_A Eukaryotic translation 99.5 1.9E-13 6.7E-18 95.3 9.3 68 107-174 14-89 (105)
332 1nu4_A U1A RNA binding domain; 99.5 8.4E-14 2.9E-18 95.7 7.3 72 105-176 5-81 (97)
333 1uaw_A Mouse-musashi-1; RNP-ty 99.5 6.4E-14 2.2E-18 92.0 6.4 69 109-178 1-73 (77)
334 1wg5_A Heterogeneous nuclear r 99.5 2.8E-13 9.5E-18 94.4 9.8 76 103-179 10-89 (104)
335 2hzc_A Splicing factor U2AF 65 99.5 2.3E-13 7.9E-18 91.5 9.0 68 106-176 4-82 (87)
336 2j76_E EIF-4B, EIF4B, eukaryot 99.5 6.2E-14 2.1E-18 97.0 6.1 74 104-179 15-93 (100)
337 2f3j_A RNA and export factor b 99.5 5.9E-13 2E-17 101.6 12.0 79 104-182 84-165 (177)
338 2diu_A KIAA0430 protein; struc 99.5 2.6E-13 8.9E-18 90.3 8.6 62 108-175 9-75 (96)
339 1x5o_A RNA binding motif, sing 99.5 7.9E-13 2.7E-17 93.7 11.7 71 105-175 22-95 (114)
340 2mss_A Protein (musashi1); RNA 99.5 1E-13 3.5E-18 90.5 6.5 67 110-177 1-71 (75)
341 2cpy_A RNA-binding protein 12; 99.5 2.1E-13 7.1E-18 96.6 8.4 75 105-180 12-90 (114)
342 2db1_A Heterogeneous nuclear r 99.5 3.2E-13 1.1E-17 96.2 9.4 75 104-179 13-93 (118)
343 2fc8_A NCL protein; structure 99.5 9.1E-13 3.1E-17 91.4 11.3 78 104-188 11-92 (102)
344 1wel_A RNA-binding protein 12; 99.4 2.8E-13 9.7E-18 97.5 8.6 77 104-181 21-101 (124)
345 2dis_A Unnamed protein product 99.4 2.9E-13 9.8E-18 95.2 8.3 70 107-176 7-84 (109)
346 2hgl_A HNRPF protein, heteroge 99.4 2.4E-13 8.1E-18 99.0 8.0 75 103-178 39-119 (136)
347 1wg1_A KIAA1579 protein, homol 99.4 1.6E-13 5.4E-18 92.6 6.5 67 107-176 4-70 (88)
348 2ki2_A SS-DNA binding protein 99.4 8.3E-14 2.8E-18 94.4 5.0 71 109-180 2-76 (90)
349 3q2s_C Cleavage and polyadenyl 99.4 3.5E-13 1.2E-17 107.2 9.3 74 107-180 67-146 (229)
350 2lmi_A GRSF-1, G-rich sequence 99.4 2E-13 6.8E-18 95.6 6.7 76 104-180 7-88 (107)
351 1iqt_A AUF1, heterogeneous nuc 99.4 2E-13 6.7E-18 89.2 6.0 68 110-178 1-72 (75)
352 3d2w_A TAR DNA-binding protein 99.4 5.6E-13 1.9E-17 89.9 8.4 64 104-172 7-70 (89)
353 1fj7_A Nucleolin RBD1, protein 99.4 5.3E-13 1.8E-17 92.4 7.8 69 106-176 15-87 (101)
354 1wf0_A TDP-43, TAR DNA-binding 99.4 4E-13 1.4E-17 90.6 6.5 73 107-188 4-78 (88)
355 2hgm_A HNRPF protein, heteroge 99.4 8.9E-13 3E-17 94.4 8.4 75 104-180 38-117 (126)
356 3egn_A RNA-binding protein 40; 99.4 9.7E-13 3.3E-17 97.1 8.8 71 106-176 43-122 (143)
357 2bz2_A Negative elongation fac 99.4 1.2E-12 4E-17 93.6 8.6 70 105-178 36-105 (121)
358 2xs2_A Deleted in azoospermia- 99.4 1.7E-12 6E-17 89.9 8.9 71 105-177 6-79 (102)
359 2dha_A FLJ20171 protein; RRM d 99.4 1.1E-12 3.7E-17 93.8 7.8 73 106-179 21-100 (123)
360 1owx_A Lupus LA protein, SS-B, 99.4 4.3E-12 1.5E-16 89.3 9.4 75 4-81 16-94 (121)
361 2lcw_A RNA-binding protein FUS 99.0 6.2E-14 2.1E-18 99.7 0.0 71 106-176 5-87 (116)
362 2dnl_A Cytoplasmic polyadenyla 99.4 1.1E-12 3.9E-17 92.8 6.5 60 106-166 6-72 (114)
363 2j8a_A Histone-lysine N-methyl 99.3 3E-12 1E-16 90.1 8.2 71 109-179 3-91 (136)
364 2pe8_A Splicing factor 45; RRM 99.3 1E-11 3.5E-16 86.2 9.5 75 106-180 6-90 (105)
365 2dnr_A Synaptojanin-1; RRM dom 99.3 1.1E-11 3.6E-16 81.8 8.9 76 3-84 4-87 (91)
366 2dit_A HIV TAT specific factor 99.3 2.8E-11 9.6E-16 85.3 11.7 74 105-178 12-96 (112)
367 2voo_A Lupus LA protein; RNA-b 99.3 5.8E-11 2E-15 91.9 12.9 71 107-178 108-181 (193)
368 3u1l_A PRE-mRNA-splicing facto 99.3 7E-12 2.4E-16 99.4 7.6 65 105-171 131-204 (240)
369 3tht_A Alkylated DNA repair pr 99.2 3.1E-11 1.1E-15 100.8 7.5 66 105-172 15-82 (345)
370 3v4m_A Splicing factor U2AF 65 99.2 6.8E-11 2.3E-15 82.0 7.9 74 107-180 4-93 (105)
371 3ue2_A Poly(U)-binding-splicin 99.2 1.1E-10 3.9E-15 82.5 8.2 74 107-180 19-105 (118)
372 3s6e_A RNA-binding protein 39; 99.2 1.8E-10 6.3E-15 80.9 9.1 75 107-181 6-90 (114)
373 1ufw_A Synaptojanin 2; RNP dom 99.1 6.3E-11 2.1E-15 78.4 5.6 73 3-81 12-93 (95)
374 1jmt_A Splicing factor U2AF 35 99.1 3.5E-11 1.2E-15 83.4 3.6 66 113-178 20-100 (104)
375 1owx_A Lupus LA protein, SS-B, 99.1 3E-10 1E-14 79.9 8.4 76 103-180 13-92 (121)
376 2d9o_A DNAJ (HSP40) homolog, s 99.0 3.4E-09 1.2E-13 72.5 11.4 54 117-173 26-79 (100)
377 3dxb_A Thioredoxin N-terminall 99.0 1.2E-09 4.1E-14 86.6 7.2 76 6-81 124-211 (222)
378 2dnr_A Synaptojanin-1; RRM dom 98.8 6.4E-09 2.2E-13 68.5 6.0 69 107-180 6-82 (91)
379 2l9w_A U4/U6 snRNA-associated- 98.7 1.4E-07 4.7E-12 63.7 8.6 72 5-79 20-96 (117)
380 1ufw_A Synaptojanin 2; RNP dom 98.7 4.5E-08 1.5E-12 64.8 5.8 68 106-178 13-89 (95)
381 2dhx_A Poly (ADP-ribose) polym 98.6 7E-07 2.4E-11 59.8 10.8 88 5-121 7-99 (104)
382 1wey_A Calcipressin 1; structu 98.5 1.7E-06 5.8E-11 58.3 9.4 76 4-82 3-83 (104)
383 3dxb_A Thioredoxin N-terminall 98.4 8.6E-07 2.9E-11 70.0 7.7 61 120-180 141-209 (222)
384 2l9w_A U4/U6 snRNA-associated- 98.2 8.3E-06 2.8E-10 55.1 8.4 67 108-176 21-92 (117)
385 1uw4_A UPF3X; nonsense mediate 98.2 9.5E-06 3.3E-10 53.7 8.6 76 7-82 2-87 (91)
386 1whv_A Poly(A)-specific ribonu 98.0 1.3E-05 4.6E-10 52.9 6.5 55 6-66 16-70 (100)
387 3ctr_A Poly(A)-specific ribonu 97.9 1.3E-05 4.6E-10 53.1 4.9 54 7-66 7-60 (101)
388 1wwh_A Nucleoporin 35, nucleop 97.8 6.9E-05 2.4E-09 51.9 7.6 70 6-80 24-94 (119)
389 2l08_A Regulator of nonsense t 97.8 9E-05 3.1E-09 49.3 6.7 76 6-81 9-94 (97)
390 1uw4_A UPF3X; nonsense mediate 97.5 0.00089 3E-08 44.2 8.8 67 109-175 2-74 (91)
391 1whv_A Poly(A)-specific ribonu 97.5 0.00061 2.1E-08 45.1 7.3 55 108-167 16-70 (100)
392 1wey_A Calcipressin 1; structu 97.4 0.0005 1.7E-08 46.3 6.6 70 109-180 6-80 (104)
393 1wwh_A Nucleoporin 35, nucleop 97.3 0.0014 4.8E-08 45.4 7.9 65 105-173 21-85 (119)
394 2dhx_A Poly (ADP-ribose) polym 97.2 0.0018 6.1E-08 43.4 7.3 62 107-173 7-73 (104)
395 3p3d_A Nucleoporin 53; structu 97.2 0.00056 1.9E-08 48.0 4.9 75 5-81 6-97 (132)
396 3ctr_A Poly(A)-specific ribonu 97.1 0.0014 4.7E-08 43.5 5.8 54 109-167 7-60 (101)
397 3pq1_A Poly(A) RNA polymerase; 96.8 0.00077 2.6E-08 58.3 3.7 57 5-64 52-108 (464)
398 2l08_A Regulator of nonsense t 96.4 0.005 1.7E-07 40.9 4.9 69 108-176 9-83 (97)
399 3p3d_A Nucleoporin 53; structu 95.3 0.023 7.7E-07 39.9 4.5 68 108-177 7-92 (132)
400 3pq1_A Poly(A) RNA polymerase; 94.4 0.024 8.3E-07 49.0 3.2 56 107-164 52-107 (464)
401 3d45_A Poly(A)-specific ribonu 94.1 0.1 3.5E-06 46.0 6.8 55 6-66 440-494 (507)
402 2g0c_A ATP-dependent RNA helic 92.5 0.62 2.1E-05 29.2 6.9 68 8-81 2-75 (76)
403 3d45_A Poly(A)-specific ribonu 86.1 2.3 7.8E-05 37.4 7.6 56 108-168 440-495 (507)
404 4eyt_A Telomerase associated p 79.5 9.9 0.00034 24.4 8.4 69 4-79 10-78 (129)
405 4e8u_A Putative uncharacterize 71.0 7 0.00024 28.7 4.9 50 8-57 14-74 (172)
406 4eyt_A Telomerase associated p 66.2 23 0.00079 22.7 7.4 56 107-166 11-66 (129)
407 3ts2_A Protein LIN-28 homolog 64.2 1.2 4.2E-05 32.0 -0.3 28 21-53 2-29 (148)
408 3lpe_A Putative transcription 61.3 30 0.001 22.3 8.9 33 33-67 40-72 (92)
409 2e5p_A Protein PHF1, PHD finge 45.0 12 0.00042 22.5 1.8 20 31-55 28-47 (68)
410 3swz_A Steroid 17-alpha-hydrox 43.0 33 0.0011 29.4 5.3 60 8-74 16-79 (494)
411 2m0o_A PHD finger protein 1; t 37.7 18 0.00062 22.4 1.8 20 31-55 45-64 (79)
412 2eqj_A Metal-response element- 37.5 20 0.00068 21.6 2.0 12 44-55 40-51 (66)
413 3fut_A Dimethyladenosine trans 36.6 30 0.001 27.5 3.6 29 7-36 111-139 (271)
414 3tbg_A Cytochrome P450 2D6; mo 35.6 25 0.00085 29.9 3.2 57 10-73 20-79 (479)
415 1nz8_A Transcription antitermi 34.1 1.1E+02 0.0036 20.6 6.8 24 44-67 61-89 (119)
416 3uzu_A Ribosomal RNA small sub 34.1 17 0.00057 29.1 1.7 32 7-38 115-146 (279)
417 4bby_A Alkyldihydroxyacetoneph 33.7 33 0.0011 31.2 3.8 54 12-65 349-408 (658)
418 1vq8_S 50S ribosomal protein L 33.6 92 0.0032 19.8 5.6 55 9-63 24-80 (85)
419 3h7h_B Transcription elongatio 33.4 53 0.0018 21.9 3.9 35 33-69 41-75 (106)
420 2e5q_A PHD finger protein 19; 31.6 9.9 0.00034 22.5 -0.0 12 44-55 34-45 (63)
421 2ns6_A Mobilization protein A; 30.3 79 0.0027 23.4 4.7 46 10-55 74-127 (185)
422 2cs4_A Protein C12ORF2; GTP bi 28.1 35 0.0012 22.2 2.2 22 11-32 21-43 (95)
423 4a17_R RPL23A, 60S ribosomal p 27.3 1.7E+02 0.0058 20.8 6.2 56 110-165 88-146 (150)
424 2k5n_A Putative cold-shock pro 26.6 29 0.001 21.4 1.5 11 44-54 13-23 (74)
425 1qyr_A KSGA, high level kasuga 26.4 48 0.0016 25.8 3.2 29 7-35 91-119 (252)
426 4a17_R RPL23A, 60S ribosomal p 26.2 1.7E+02 0.0057 20.9 5.5 54 10-63 90-145 (150)
427 3ftd_A Dimethyladenosine trans 25.9 42 0.0015 26.1 2.8 30 7-36 96-125 (249)
428 1i4w_A Mitochondrial replicati 25.4 48 0.0016 27.5 3.1 22 8-29 144-165 (353)
429 3u5e_X 60S ribosomal protein L 25.1 1.8E+02 0.0062 20.5 6.3 56 110-165 80-138 (142)
430 4hcz_A PHD finger protein 1; p 25.1 42 0.0014 19.6 1.8 11 45-55 31-41 (58)
431 2od0_A Hypothetical protein VP 24.9 64 0.0022 21.2 3.1 22 18-39 4-25 (105)
432 2zkr_s 60S ribosomal protein L 24.8 1.8E+02 0.0062 20.8 5.5 56 10-65 96-153 (156)
433 3tqs_A Ribosomal RNA small sub 24.8 22 0.00076 27.9 0.9 31 8-38 98-128 (255)
434 3fry_A Probable copper-exporti 24.7 1.1E+02 0.0038 17.8 5.3 55 7-65 7-61 (73)
435 1eij_A Hypothetical protein MT 24.3 52 0.0018 20.7 2.4 20 12-31 50-69 (80)
436 3p8b_B Transcription antitermi 23.4 70 0.0024 22.7 3.3 34 33-68 33-66 (152)
437 3ezj_A General secretion pathw 23.4 1.2E+02 0.0041 23.3 4.9 116 14-132 9-133 (241)
438 2kcm_A Cold shock domain famil 23.0 35 0.0012 21.0 1.4 39 44-82 11-54 (74)
439 3cam_A Cold-shock domain famil 22.9 38 0.0013 20.3 1.5 11 44-54 12-22 (67)
440 3iz5_X 60S ribosomal protein L 22.8 1.7E+02 0.0057 20.9 5.0 56 10-65 92-149 (152)
441 1c9o_A CSPB, cold-shock protei 22.7 39 0.0013 20.1 1.5 11 44-54 12-22 (66)
442 1gff_3 Bacteriophage G4 capsid 22.4 23 0.0008 16.3 0.4 11 254-264 5-15 (26)
443 1wvf_A 4-cresol dehydrogenase 22.1 55 0.0019 28.6 3.0 41 22-62 217-261 (520)
444 3iz5_X 60S ribosomal protein L 22.0 1.8E+02 0.006 20.8 5.0 55 110-164 90-147 (152)
445 3u5e_X 60S ribosomal protein L 21.9 2.1E+02 0.0073 20.1 5.6 54 10-63 82-137 (142)
446 3a0j_A Cold shock protein; OB- 21.6 42 0.0014 20.5 1.5 11 44-54 12-22 (73)
447 1ytr_A Bacteriocin plantaricin 21.3 53 0.0018 14.9 1.4 12 20-31 14-25 (26)
448 3j21_T 50S ribosomal protein L 21.0 1.7E+02 0.0058 18.6 5.5 57 9-65 25-83 (86)
449 1ik9_C DNA ligase IV; DNA END 20.5 73 0.0025 16.6 2.1 15 16-30 20-34 (37)
450 2exu_A Transcription initiatio 20.5 87 0.003 23.6 3.4 35 33-69 139-173 (200)
451 2nn4_A Hypothetical protein YQ 20.4 31 0.0011 21.2 0.7 18 19-36 4-21 (72)
452 1g6p_A Cold shock protein TMCS 20.4 47 0.0016 19.8 1.5 11 44-54 11-21 (66)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=3.9e-34 Score=227.32 Aligned_cols=158 Identities=23% Similarity=0.343 Sum_probs=138.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.|+++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|+..||+..+.|+.|.+.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 4788999999999999999999999999999999964 4678999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC--CCEEEEEEcChhh
Q 023798 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS--GTTGIVDYTNYDD 158 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~--~~~afv~f~~~~~ 158 (277)
..... .......+|||+|||..+++++|+++|..||.|..+.++.+.. .+||||+|.+.++
T Consensus 93 ~~~~~-----------------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~ 155 (213)
T 4f02_A 93 QRDPS-----------------LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 155 (213)
T ss_dssp CCCTH-----------------HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHH
T ss_pred ccccc-----------------ccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHH
Confidence 64321 1112346899999999999999999999999999999988754 4599999999999
Q ss_pred HHHHHHHcCCceeccceeee
Q 023798 159 MKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 159 a~~a~~~l~g~~~~g~~~~~ 178 (277)
|++|++.|||..++|+.+.+
T Consensus 156 a~~Ai~~lng~~~~g~~i~V 175 (213)
T 4f02_A 156 AERAIEKMNGMLLNDRKVFV 175 (213)
T ss_dssp HHHHHHHHTTCEETTEECEE
T ss_pred HHHHHHHhCCCEECCEEEEE
Confidence 99999999999999955433
No 2
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=2.7e-33 Score=220.37 Aligned_cols=177 Identities=15% Similarity=0.203 Sum_probs=141.9
Q ss_pred CCCCeEEEcCCC-CCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccC
Q 023798 4 RASRTLYVGNLP-GDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (277)
Q Consensus 4 ~~~~~l~v~nL~-~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~ 82 (277)
.++++|||+||| ..+++++|+++|+.||.|..|+++.+ .+|||||+|.+.++|+.|+..|||..|.|+.|.|.++..
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 478999999999 79999999999999999999999754 479999999999999999999999999999999999975
Q ss_pred CCCCCCCC--CCC------CCCCC--CC--------CCCCCCccceEEccCCCCCCCHHHHHHHHhhcCce--eEEEEEe
Q 023798 83 GRGRSSSD--RHS------SHSSG--RG--------RGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDV--CFSQVFR 142 (277)
Q Consensus 83 ~~~~~~~~--~~~------~~~~~--~~--------~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i--~~~~~~~ 142 (277)
....+... ... .+... .. ......+..+|||+|||+.+++++|+++|++||.| ..+.++.
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~ 159 (205)
T 3tyt_A 80 PAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFS 159 (205)
T ss_dssp SCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECS
T ss_pred CccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEc
Confidence 43211100 000 00000 00 00112356789999999999999999999999999 8888887
Q ss_pred cC--CCCEEEEEEcChhhHHHHHHHcCCceeccceeeeEEEe
Q 023798 143 DG--SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (277)
Q Consensus 143 ~~--~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 182 (277)
+. ..++|||+|.+.++|.+|+..|||..+.|...+..+.+
T Consensus 160 ~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~v 201 (205)
T 3tyt_A 160 GKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTL 201 (205)
T ss_dssp CCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEEC
T ss_pred CCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEE
Confidence 64 23699999999999999999999999999765444443
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-32 Score=209.18 Aligned_cols=154 Identities=25% Similarity=0.419 Sum_probs=137.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCCC
Q 023798 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~~ 84 (277)
++|||+|||+++|+++|+++|+.||+|..|.+.. ++.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 5899999999999999999999999999999954 45678999999999999999999899999999999999986543
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHH
Q 023798 85 GRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMK 160 (277)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~ 160 (277)
. .......+|+|+|||..+++++|.++|++||.|..+.+..+.. .++|||+|.+.++|.
T Consensus 81 ~-----------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~ 143 (166)
T 3md3_A 81 Q-----------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQ 143 (166)
T ss_dssp C-----------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHH
T ss_pred C-----------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHH
Confidence 2 2233567999999999999999999999999999999998743 359999999999999
Q ss_pred HHHHHcCCceeccceee
Q 023798 161 HAIKKLDDSEFRNAFSR 177 (277)
Q Consensus 161 ~a~~~l~g~~~~g~~~~ 177 (277)
+|+..|||..++|+.+.
T Consensus 144 ~A~~~l~g~~~~g~~i~ 160 (166)
T 3md3_A 144 NAMDSMQGQDLNGRPLR 160 (166)
T ss_dssp HHHHHHTTCEETTEECE
T ss_pred HHHHHhCCCccCCcEEE
Confidence 99999999999995443
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=3e-32 Score=208.14 Aligned_cols=155 Identities=23% Similarity=0.398 Sum_probs=138.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
++++|||+|||+++++++|+++|+.||+|..|.+.. ++.++|||||+|.+.++|+.|+..|||..+.|+.|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 468999999999999999999999999999999954 56778999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChh
Q 023798 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYD 157 (277)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~ 157 (277)
.... .....+|+|+|||..+++++|+++|.+||.|..+.+..+.. .++|||+|.+.+
T Consensus 81 ~~~~-------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~ 141 (167)
T 1fxl_A 81 PSSA-------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 141 (167)
T ss_dssp CCCG-------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CCcc-------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHH
Confidence 4321 22456899999999999999999999999999999988763 359999999999
Q ss_pred hHHHHHHHcCCceeccceeee
Q 023798 158 DMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 158 ~a~~a~~~l~g~~~~g~~~~~ 178 (277)
+|.+|++.|||..+.|+....
T Consensus 142 ~A~~A~~~l~g~~~~g~~~~i 162 (167)
T 1fxl_A 142 EAEEAIKGLNGQKPSGATEPI 162 (167)
T ss_dssp HHHHHHHHHTTCCCTTCSSCC
T ss_pred HHHHHHHHhcCCccCCCccce
Confidence 999999999999999965433
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=3.4e-32 Score=208.16 Aligned_cols=150 Identities=27% Similarity=0.430 Sum_probs=136.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
++++|||+|||+++++++|+++|+.||+|..|.+.. ++.++|||||+|.+.++|+.|+..|||..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 689999999999999999999999999999999953 56788999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC----CEEEEEEcChh
Q 023798 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYD 157 (277)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~afv~f~~~~ 157 (277)
.... .....+|+|.|||..+++++|+++|++||.|..+.+..+... ++|||+|.+.+
T Consensus 82 ~~~~-------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~ 142 (168)
T 1b7f_A 82 PGGE-------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKRE 142 (168)
T ss_dssp CCSS-------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CCcc-------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHH
Confidence 4332 224579999999999999999999999999999999987632 59999999999
Q ss_pred hHHHHHHHcCCceecc
Q 023798 158 DMKHAIKKLDDSEFRN 173 (277)
Q Consensus 158 ~a~~a~~~l~g~~~~g 173 (277)
+|.+|++.|+|..+.|
T Consensus 143 ~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 143 EAQEAISALNNVIPEG 158 (168)
T ss_dssp HHHHHHHHHTTCCCTT
T ss_pred HHHHHHHHhcCCEecC
Confidence 9999999999999987
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=3.9e-32 Score=213.06 Aligned_cols=159 Identities=14% Similarity=0.285 Sum_probs=134.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.++++|||+|||+++|+++|+++|+.||+|..|.++. ++.++|||||+|.+.++|++|+. +++..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeeecc
Confidence 4678999999999999999999999999999999965 46678999999999999999999 5999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcCh
Q 023798 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNY 156 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~ 156 (277)
........ ........+|||+|||..+++++|+++|..||.|..+.++.+.. .+||||+|.+.
T Consensus 90 ~~~~~~~~-------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~ 156 (196)
T 1l3k_A 90 VSREDSQR-------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156 (196)
T ss_dssp CC------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred cCcccccc-------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCH
Confidence 65432211 01223457999999999999999999999999999999998853 35999999999
Q ss_pred hhHHHHHHHcCCceeccceee
Q 023798 157 DDMKHAIKKLDDSEFRNAFSR 177 (277)
Q Consensus 157 ~~a~~a~~~l~g~~~~g~~~~ 177 (277)
++|.+|+.. ++..++|+.+.
T Consensus 157 ~~A~~A~~~-~~~~~~G~~i~ 176 (196)
T 1l3k_A 157 DSVDKIVIQ-KYHTVNGHNCE 176 (196)
T ss_dssp HHHHHHHHC-SCCEETTEECE
T ss_pred HHHHHHHHh-CCcEECCEEEE
Confidence 999999986 79999995433
No 7
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=2.4e-31 Score=220.28 Aligned_cols=173 Identities=19% Similarity=0.264 Sum_probs=141.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEE
Q 023798 3 SRASRTLYVGNLPGDIREREVE----DLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~----~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 78 (277)
..++++|||+|||+++|+++|+ ++|+.||.|..|.+..++.++|||||+|.+.++|..|+..|||..|.|+.|.|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 4789999999999999999966 999999999999998888999999999999999999999999999999999999
Q ss_pred EccCCCCCCCC--CC-------------------------C--------C------------------------------
Q 023798 79 LAHGGRGRSSS--DR-------------------------H--------S------------------------------ 93 (277)
Q Consensus 79 ~a~~~~~~~~~--~~-------------------------~--------~------------------------------ 93 (277)
|+......... .. . .
T Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (282)
T 3pgw_A 86 YAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMP 165 (282)
T ss_pred EeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCC
Confidence 99754320000 00 0 0
Q ss_pred ---CCCCCC------------------------CCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC
Q 023798 94 ---SHSSGR------------------------GRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG 146 (277)
Q Consensus 94 ---~~~~~~------------------------~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~ 146 (277)
.....+ .......+..+|||+|||..+++++|+++|.+||.|..+.+..+. .
T Consensus 166 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-~ 244 (282)
T 3pgw_A 166 PPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-H 244 (282)
T ss_pred CCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-C
Confidence 000000 000122356789999999999999999999999999999998765 4
Q ss_pred CEEEEEEcChhhHHHHHHHcCCceec-ccee
Q 023798 147 TTGIVDYTNYDDMKHAIKKLDDSEFR-NAFS 176 (277)
Q Consensus 147 ~~afv~f~~~~~a~~a~~~l~g~~~~-g~~~ 176 (277)
+||||+|.+.++|.+|++.|||..+. |+.+
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l 275 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAM 275 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCCCCEE
Confidence 69999999999999999999999999 7443
No 8
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=3.2e-31 Score=212.79 Aligned_cols=172 Identities=17% Similarity=0.254 Sum_probs=139.9
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 3 SRASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 3 ~~~~~~l~v~nL~~-~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
..++++|||+|||+ ++++++|+++|+.||.|..|.+..+. +|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 35789999999999 99999999999999999999997654 7899999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCC--------------CCCC--CCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcC-ceeEEEEEecC
Q 023798 82 GGRGRSSSDRHS--------------SHSS--GRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDG 144 (277)
Q Consensus 82 ~~~~~~~~~~~~--------------~~~~--~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~ 144 (277)
............ .... .........+..+|||+|||..+++++|+++|.+|| .|..+.++..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~- 187 (229)
T 2adc_A 109 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK- 187 (229)
T ss_dssp CCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-
T ss_pred CccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-
Confidence 553221111000 0000 000011224568999999999999999999999999 9999998653
Q ss_pred CCCEEEEEEcChhhHHHHHHHcCCceec-cceee
Q 023798 145 SGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSR 177 (277)
Q Consensus 145 ~~~~afv~f~~~~~a~~a~~~l~g~~~~-g~~~~ 177 (277)
..++|||+|.+.++|.+|++.|+|..+. |+.+.
T Consensus 188 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~ 221 (229)
T 2adc_A 188 DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLR 221 (229)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCE
T ss_pred CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEE
Confidence 3569999999999999999999999998 75443
No 9
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.98 E-value=1.3e-30 Score=204.66 Aligned_cols=168 Identities=22% Similarity=0.397 Sum_probs=136.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcc----C-------ceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCC
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKY----G-------PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~----G-------~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 72 (277)
..+++|||+|||+++|+++|+++|+.| | .|..+.+. .++|||||+|.+.++|++|+ .|||..|.|
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~---~~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE---TTTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec---CCCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 468999999999999999999999999 4 56666653 56899999999999999999 699999999
Q ss_pred ceEEEEEccCCCCCCCCCCCC-CCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CC
Q 023798 73 HRLRVELAHGGRGRSSSDRHS-SHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GT 147 (277)
Q Consensus 73 ~~l~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~ 147 (277)
+.|.|.++............. ................+|||+|||..+++++|+++|.+||.|..+.+..+.. .+
T Consensus 78 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g 157 (198)
T 2yh0_A 78 QSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 157 (198)
T ss_dssp EEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEE
T ss_pred ceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcce
Confidence 999999987654332211111 1111111122335678999999999999999999999999999999998853 35
Q ss_pred EEEEEEcChhhHHHHHHHcCCceeccce
Q 023798 148 TGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (277)
Q Consensus 148 ~afv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (277)
||||+|.+.++|++|++.|+|..++|+.
T Consensus 158 ~afV~f~~~~~a~~A~~~l~g~~~~g~~ 185 (198)
T 2yh0_A 158 YAFCEYVDINVTDQAIAGLNGMQLGDKK 185 (198)
T ss_dssp EEEEEESSSSHHHHHHHHHTTCEETTEE
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 9999999999999999999999999944
No 10
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.98 E-value=5.3e-31 Score=207.01 Aligned_cols=172 Identities=17% Similarity=0.251 Sum_probs=140.0
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023798 5 ASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (277)
Q Consensus 5 ~~~~l~v~nL~~-~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~ 83 (277)
++++|||+|||+ ++++++|+++|+.||.|..|.+..+. +|||||+|.+.++|+.|+..|||..|.|+.|.|.++...
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 359999999999 99999999999999999999997654 789999999999999999999999999999999999755
Q ss_pred CCCCCCCCCC--------------CC--CCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcC-ceeEEEEEecCCC
Q 023798 84 RGRSSSDRHS--------------SH--SSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGSG 146 (277)
Q Consensus 84 ~~~~~~~~~~--------------~~--~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~ 146 (277)
.......... .. ...........+..+|+|+|||..+++++|+++|.+|| .|..+.++.+. .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-~ 158 (198)
T 1qm9_A 80 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-R 158 (198)
T ss_dssp SCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-S
T ss_pred CcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-C
Confidence 3221111000 00 00001111234578999999999999999999999999 99999986643 5
Q ss_pred CEEEEEEcChhhHHHHHHHcCCceec-cceeeeE
Q 023798 147 TTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAY 179 (277)
Q Consensus 147 ~~afv~f~~~~~a~~a~~~l~g~~~~-g~~~~~~ 179 (277)
++|||+|.+.++|.+|+..|+|..++ |+.+.+.
T Consensus 159 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 159 KMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp SCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred cEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 79999999999999999999999998 7654443
No 11
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.98 E-value=4.6e-31 Score=210.08 Aligned_cols=166 Identities=20% Similarity=0.327 Sum_probs=137.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
++++|||+|||+++|+++|+++|+.||+|..|.|+. ++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 458999999999999999999999999999999954 56789999999999999999999999999999999998875
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChh
Q 023798 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYD 157 (277)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~ 157 (277)
.......... ..........+|||.|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.+
T Consensus 107 ~~~~~~~~~~--------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~ 178 (216)
T 2qfj_A 107 NIGQAQPIID--------QLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQ 178 (216)
T ss_dssp CCGGGHHHHH--------HHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred Cccccchhhh--------hhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHH
Confidence 4321100000 0000112447999999999999999999999999999999998853 359999999999
Q ss_pred hHHHHHHHcCCceeccceeee
Q 023798 158 DMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 158 ~a~~a~~~l~g~~~~g~~~~~ 178 (277)
+|.+|+..|||..++|+.+.+
T Consensus 179 ~A~~A~~~l~g~~~~g~~i~V 199 (216)
T 2qfj_A 179 SSQDAVSSMNLFDLGGQYLRV 199 (216)
T ss_dssp HHHHHHHHHTTCBCSSSBCEE
T ss_pred HHHHHHHHccCCEeCCcEEEE
Confidence 999999999999999965433
No 12
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.98 E-value=5.2e-31 Score=202.87 Aligned_cols=151 Identities=17% Similarity=0.340 Sum_probs=132.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecC---C--CCCceEEEEEcChHHHHHHHHhcCCCccC---CceEE
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---P--RPPGYAFVEFEEARDAEDAIRGRDGYDFD---GHRLR 76 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~---~--~~~g~afV~f~~~~~A~~a~~~l~g~~~~---g~~l~ 76 (277)
++++|||+|||+++|+++|+++|+.||+|..|.++.+ + .++|||||+|.+.++|++|+..||+..+. +..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 5789999999999999999999999999999999543 2 67899999999999999999999998876 67888
Q ss_pred EEEccCCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC---CEEEEEE
Q 023798 77 VELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDY 153 (277)
Q Consensus 77 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~afv~f 153 (277)
+.++..... ......+|+|+|||..+++++|+++|++||.|..+.++.+..+ +||||+|
T Consensus 82 ~~~~~~~~~------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f 143 (175)
T 3nmr_A 82 MKPADSEKN------------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTF 143 (175)
T ss_dssp EEECGGGCC------------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEE
T ss_pred Ecccccccc------------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEE
Confidence 888764332 2235679999999999999999999999999999999988653 5999999
Q ss_pred cChhhHHHHHHHcCCceecc
Q 023798 154 TNYDDMKHAIKKLDDSEFRN 173 (277)
Q Consensus 154 ~~~~~a~~a~~~l~g~~~~g 173 (277)
.+.++|++|++.|||..+.+
T Consensus 144 ~~~~~A~~A~~~l~g~~~~~ 163 (175)
T 3nmr_A 144 TTRAMAQTAIKAMHQAQTME 163 (175)
T ss_dssp SSHHHHHHHHHHHTTSCCCT
T ss_pred CCHHHHHHHHHHhcCCcccC
Confidence 99999999999999987764
No 13
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=9.7e-31 Score=200.86 Aligned_cols=152 Identities=22% Similarity=0.428 Sum_probs=133.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcc----C-------ceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCC
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKY----G-------PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~----G-------~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 72 (277)
+++++|||+|||+++|+++|+++|+.| | .|..+.+. .++|||||+|.++++|++|+ .|||..|.|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~---~~~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE---TTTTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec---CCCCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 467999999999999999999999999 6 77777765 45899999999999999999 799999999
Q ss_pred ceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCE
Q 023798 73 HRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTT 148 (277)
Q Consensus 73 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~ 148 (277)
+.|.|.++..... .....+|+|+|||..+++++|+++|.+||.|..+.+..++. .+|
T Consensus 78 ~~i~v~~~~~~~~-------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~ 138 (172)
T 2g4b_A 78 QSLKIRRPHDYQP-------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGY 138 (172)
T ss_dssp EECEEECCSSCCC-------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEE
T ss_pred ceeeecCCcccCC-------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceE
Confidence 9999998754322 12357999999999999999999999999999999998853 359
Q ss_pred EEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 149 GIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 149 afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
|||+|.+.++|++|++.|||..++|+.+.+
T Consensus 139 afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 168 (172)
T 2g4b_A 139 AFCEYVDINVTDQAIAGLNGMQLGDKKLLV 168 (172)
T ss_dssp EEEEESSTTHHHHHHHHHTTCEETTEECEE
T ss_pred EEEEeCCHHHHHHHHHHcCCCEECCeEEEE
Confidence 999999999999999999999999955433
No 14
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=5.7e-32 Score=208.38 Aligned_cols=154 Identities=17% Similarity=0.256 Sum_probs=133.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEe--ecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~--~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
..++++|||+|||+++|+++|+++|..||.|..+.+ ..++.++|||||+|.++++|.+|++ |||..|.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 467899999999999999999999999998766333 3457889999999999999999995 9999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHH
Q 023798 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMK 160 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~ 160 (277)
..... .......+|||+|||..+++++|+++|.+||.|..+ .......+||||+|.+.++|.
T Consensus 89 ~~~~~-----------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~ 150 (175)
T 1fje_B 89 KGRDS-----------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAE 150 (175)
T ss_dssp CCSSC-----------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHH
T ss_pred CCccc-----------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHH
Confidence 75432 223466899999999999999999999999999877 333345679999999999999
Q ss_pred HHHHHcCCceeccce
Q 023798 161 HAIKKLDDSEFRNAF 175 (277)
Q Consensus 161 ~a~~~l~g~~~~g~~ 175 (277)
+|+..|+|..++|+.
T Consensus 151 ~A~~~l~g~~~~g~~ 165 (175)
T 1fje_B 151 KNLEEKQGAEIDGRS 165 (175)
T ss_dssp HHHHHHTEEEETTEE
T ss_pred HHHHHhCCCEECCeE
Confidence 999999999999944
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=3.5e-31 Score=202.38 Aligned_cols=151 Identities=18% Similarity=0.362 Sum_probs=133.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
+++++|||+|||+++|+++|+++|+.||+|..|.++. ++.++|||||+|.+.++|++|+.. +..+.|+.|.|.++
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 4689999999999999999999999999999999954 578899999999999999999994 57899999999887
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcCh
Q 023798 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNY 156 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~ 156 (277)
.... ......+|||+|||..+++++|.++|++||.|..+.+..+.. .|||||+|.+.
T Consensus 79 ~~~~-------------------~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 139 (167)
T 2cjk_A 79 IPRD-------------------EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSA 139 (167)
T ss_dssp CCHH-------------------HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSH
T ss_pred cchh-------------------hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCH
Confidence 5321 122456999999999999999999999999999999987743 46999999999
Q ss_pred hhHHHHHHHcCCceecccee
Q 023798 157 DDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 157 ~~a~~a~~~l~g~~~~g~~~ 176 (277)
++|++|++ +++..++|+.+
T Consensus 140 ~~a~~A~~-~~~~~~~g~~i 158 (167)
T 2cjk_A 140 DAVDRVCQ-NKFIDFKDRKI 158 (167)
T ss_dssp HHHHHHHH-CSEECSSSSCE
T ss_pred HHHHHHHh-CCCEEeCCeEE
Confidence 99999998 89999999544
No 16
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=2.1e-29 Score=209.64 Aligned_cols=159 Identities=14% Similarity=0.237 Sum_probs=134.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccC-ceeEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G-~v~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
++++|||+|||+.+++++|.++|..|| +|..|.++. .+.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 999999954 35679999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCC-CCHHHHHHHHhhcCceeEEEEEecCC-----CCEEEEEEcC
Q 023798 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDGS-----GTTGIVDYTN 155 (277)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~-----~~~afv~f~~ 155 (277)
+....... ........+|||.|||.. +++++|+++|..||.|..+.++.+.. .+||||+|.+
T Consensus 196 ~~~~~~~~------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~ 263 (292)
T 2ghp_A 196 PLEKSKRT------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFEN 263 (292)
T ss_dssp CC---------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESS
T ss_pred CCcccccc------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCC
Confidence 54432211 122345689999999999 99999999999999999999988654 5699999999
Q ss_pred hhhHHHHHHHcCCceecccee
Q 023798 156 YDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 156 ~~~a~~a~~~l~g~~~~g~~~ 176 (277)
.++|.+|+ .|||..++|+.+
T Consensus 264 ~~~A~~A~-~l~g~~~~g~~i 283 (292)
T 2ghp_A 264 KDSAERAL-QMNRSLLGNREI 283 (292)
T ss_dssp HHHHHHHG-GGTTEEETTEEE
T ss_pred HHHHHHHH-HhcCCEECCcEE
Confidence 99999999 999999999443
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=3.7e-29 Score=207.30 Aligned_cols=157 Identities=18% Similarity=0.255 Sum_probs=139.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.+.++|||+|||+.+++++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4678999999999999999999999999999999853 5678999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCC-CHHHHHHHHhhcCceeEEEEEecCCC---CEEEEEEcCh
Q 023798 81 HGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSA-SWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNY 156 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~-~~~~l~~~f~~~g~i~~~~~~~~~~~---~~afv~f~~~ 156 (277)
...... .......+|+|+|||..+ ++++|+++|+.||.|..+.++.+..+ ++|||+|.+.
T Consensus 173 ~~~~~~----------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~ 236 (284)
T 3smz_A 173 DAGQLT----------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETA 236 (284)
T ss_dssp CGGGCC----------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSH
T ss_pred CCCCCC----------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCH
Confidence 754321 122355799999999995 99999999999999999999987543 5999999999
Q ss_pred hhHHHHHHHcCCceecccee
Q 023798 157 DDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 157 ~~a~~a~~~l~g~~~~g~~~ 176 (277)
++|.+|+..|+|..++|+.+
T Consensus 237 ~~A~~A~~~l~g~~~~g~~l 256 (284)
T 3smz_A 237 EMAEEAQQQADGLSLGGSHL 256 (284)
T ss_dssp HHHHHHHHHHTTCEETTEEC
T ss_pred HHHHHHHHHhCCCccCCeEE
Confidence 99999999999999999543
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=7.6e-29 Score=205.43 Aligned_cols=143 Identities=23% Similarity=0.317 Sum_probs=131.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCCC
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~~ 84 (277)
++++|||+|||+++|+++|+++|+.|| |..+.+ +.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~--- 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV---DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP--- 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE---ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE---ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC---
Confidence 679999999999999999999999999 999988 4668999999999999999999999999999999999863
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHH
Q 023798 85 GRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMK 160 (277)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~ 160 (277)
...+|||+|||..+++++|.++|..||.|..+.++.+.. .+||||+|.+.++|.
T Consensus 94 ----------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~ 151 (284)
T 3smz_A 94 ----------------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAA 151 (284)
T ss_dssp ----------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred ----------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHH
Confidence 235999999999999999999999999999999988764 359999999999999
Q ss_pred HHHHHcCCceecccee
Q 023798 161 HAIKKLDDSEFRNAFS 176 (277)
Q Consensus 161 ~a~~~l~g~~~~g~~~ 176 (277)
.|+..|+|..++|+.+
T Consensus 152 ~A~~~l~~~~~~g~~i 167 (284)
T 3smz_A 152 RAKSDLLGKPLGPRTL 167 (284)
T ss_dssp HHHHHHTTCEETTEEC
T ss_pred HHHHHhCCCEeCCcEE
Confidence 9999999999999543
No 19
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=3e-29 Score=205.15 Aligned_cols=139 Identities=27% Similarity=0.399 Sum_probs=127.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCCC
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGR 84 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~~ 84 (277)
++++|||+|||+++|+++|+++|+.||.|..|.+.. ++|||||+|.+.++|..|+..|||..|.|+.|.|.++..
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~-- 95 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR---DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH-- 95 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC--
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc--
Confidence 567999999999999999999999999999999963 489999999999999999999999999999999999852
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC---CCEEEEEEcChhhHHH
Q 023798 85 GRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKH 161 (277)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~afv~f~~~~~a~~ 161 (277)
..+|||+|||..+++++|+++|..||.|..+.++.+.. .+||||+|.+.++|..
T Consensus 96 -----------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~ 152 (261)
T 3sde_A 96 -----------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARK 152 (261)
T ss_dssp -----------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHH
T ss_pred -----------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHH
Confidence 35899999999999999999999999999999998854 3599999999999999
Q ss_pred HHHHcCCcee
Q 023798 162 AIKKLDDSEF 171 (277)
Q Consensus 162 a~~~l~g~~~ 171 (277)
|+..|++..+
T Consensus 153 A~~~l~~~~~ 162 (261)
T 3sde_A 153 ALERCGDGAF 162 (261)
T ss_dssp HHHHHHHSCE
T ss_pred HHHHhcCCeE
Confidence 9999955444
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=6.5e-29 Score=206.63 Aligned_cols=146 Identities=21% Similarity=0.272 Sum_probs=129.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecC-CCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccC
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~-~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~ 82 (277)
.++++|||+|||+++|+++|+++|+.||+|..|.|..+ ..++|||||+|.+.++|.+|+. |||..|.|+.|.|.++.
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~~- 116 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLT- 116 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEECC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEECC-
Confidence 47899999999999999999999999999999999653 3358999999999999999996 99999999999999862
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcC-ceeEEEEEecC---CCCEEEEEEcChhh
Q 023798 83 GRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDG---SGTTGIVDYTNYDD 158 (277)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~---~~~~afv~f~~~~~ 158 (277)
..+|||+|||..+++++|.++|..|| .|..+.++.+. ..+||||+|.+.++
T Consensus 117 -------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~ 171 (292)
T 2ghp_A 117 -------------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKED 171 (292)
T ss_dssp -------------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHH
T ss_pred -------------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHH
Confidence 36999999999999999999999999 99999998765 45799999999999
Q ss_pred HHHHHHHcCCceecccee
Q 023798 159 MKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 159 a~~a~~~l~g~~~~g~~~ 176 (277)
|..|+..|+|..+.|+.+
T Consensus 172 a~~A~~~l~g~~~~g~~l 189 (292)
T 2ghp_A 172 ARYCVEKLNGLKIEGYTL 189 (292)
T ss_dssp HHHHHHHHTTCEETTEEC
T ss_pred HHHHHHHhCCCEeCCcEE
Confidence 999999999999999543
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.91 E-value=1.3e-24 Score=155.22 Aligned_cols=109 Identities=21% Similarity=0.352 Sum_probs=72.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecC-CCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~-~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~ 83 (277)
.+++|||+|||+++|+++|+++|+.||.|..|.|+.+ +.++|||||+|.+.++|++||..|||..|.|+.|.|.++...
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 4678999999999999999999999999999999553 456899999999999999999999999999999999998754
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHH
Q 023798 84 RGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQD 124 (277)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~ 124 (277)
...... .........+|||+|||+.+|++.
T Consensus 84 ~~~~~~-----------~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAE-----------LGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC---------------------------------------
T ss_pred cccccc-----------cccccCCCCceEeCCCCCCccccc
Confidence 322111 012223446799999999998763
No 22
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.90 E-value=1.4e-22 Score=176.14 Aligned_cols=82 Identities=35% Similarity=0.623 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.+.++|||+|||+.+|+++|.++|++||.|..|.|+. ++.++|||||+|.+.++|++||..|||..|.|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 4678999999999999999999999999999999964 5778999999999999999999999999999999999999
Q ss_pred cCCCC
Q 023798 81 HGGRG 85 (277)
Q Consensus 81 ~~~~~ 85 (277)
.....
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 86443
No 23
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.88 E-value=1.2e-22 Score=145.20 Aligned_cols=106 Identities=29% Similarity=0.464 Sum_probs=95.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 2 ~~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
...++++|||+|||+.+++++|+++|+.||.|..|.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 34678999999999999999999999999999999998888889999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCc
Q 023798 82 GGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGD 134 (277)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~ 134 (277)
.... ..+++...++++|.++|.+||-
T Consensus 84 ~~~~---------------------------~~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 84 ANRA---------------------------FQKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHH---------------------------TTTSCHHHHHHHHHHHHHHHCC
T ss_pred CChh---------------------------hhhhhHhHhHHHHHHHHHHhCC
Confidence 4321 1456677789999999999984
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=3.4e-22 Score=138.43 Aligned_cols=78 Identities=28% Similarity=0.488 Sum_probs=72.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
..++|||+|||+++|+++|+++|+.||+|..|.+.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 457899999999999999999999999999999954 57789999999999999999999999999999999999986
Q ss_pred C
Q 023798 82 G 82 (277)
Q Consensus 82 ~ 82 (277)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 3
No 25
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.87 E-value=6.1e-22 Score=172.11 Aligned_cols=157 Identities=15% Similarity=0.155 Sum_probs=98.8
Q ss_pred HHHHHhccCceeEEEe----ecCC-CCCceE-----EEEEcChHHHHHHHHhcCCCccCCceEEEEEccCCCCCCCCCCC
Q 023798 23 VEDLFYKYGPIAHIDL----KIPP-RPPGYA-----FVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRH 92 (277)
Q Consensus 23 L~~~F~~~G~v~~v~~----~~~~-~~~g~a-----fV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~ 92 (277)
|.+||.++|+|..|.. +... ...+|+ |++|.....+..++..++...+.++............. ....
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~--~~~~ 86 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEV--ETEL 86 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHH--HHhh
Confidence 7899999999988733 2111 233344 78888766665555433332222110000000000000 0000
Q ss_pred CCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecC----CCCEEEEEEcChhhHHHHHHHcCC
Q 023798 93 SSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDD 168 (277)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~afv~f~~~~~a~~a~~~l~g 168 (277)
..............+.++|||+|||+.+++++|.++|.+||.|..|.|+.+. ..+||||+|.+.++|++|++.|||
T Consensus 87 ~~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng 166 (437)
T 3pgw_S 87 KMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADG 166 (437)
T ss_pred hhcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCC
Confidence 0000000011223355799999999999999999999999999999998774 356999999999999999999999
Q ss_pred ceeccceeeeEEE
Q 023798 169 SEFRNAFSRAYVR 181 (277)
Q Consensus 169 ~~~~g~~~~~~i~ 181 (277)
..|.|..+.+.+.
T Consensus 167 ~~i~gr~i~V~~a 179 (437)
T 3pgw_S 167 KKIDGRRVLVDVE 179 (437)
T ss_pred CEECCEEEEEEEe
Confidence 9999976655544
No 26
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.86 E-value=9.9e-22 Score=137.00 Aligned_cols=100 Identities=43% Similarity=0.640 Sum_probs=83.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCCCCC
Q 023798 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGR 86 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (277)
++|||+|||+++|+++|+++|++||+|..|.+..+ ++|||||+|.+.++|++|+..|||..|.|+.|.|.++......
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 58999999999999999999999999999999766 7899999999999999999999999999999999999865533
Q ss_pred CCCCCCCCCCCCCCCCCCCCccceEEccCCC
Q 023798 87 SSSDRHSSHSSGRGRGVSRRSEYRVLVTGLP 117 (277)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~ 117 (277)
....... .......+|||+||+
T Consensus 79 ~~~~~~~---------~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 79 SRFDRPP---------ARRKLLEVLFNGPLE 100 (101)
T ss_dssp SCCCSCC---------CSCCCCSCCCSCCCC
T ss_pred ccCCCCC---------ccccCCCceecCCCC
Confidence 2211111 122345689999986
No 27
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.86 E-value=2.5e-21 Score=127.69 Aligned_cols=74 Identities=18% Similarity=0.252 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
-.+.-|||+||++.+|+++|+++|.+||+|..+++.. ++|||||+|.++++|++|+..||+..|.|+.|.|++|
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 3568899999999999999999999999999999964 6999999999999999999999999999999999997
No 28
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.9e-21 Score=134.60 Aligned_cols=83 Identities=60% Similarity=1.066 Sum_probs=77.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccC
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~ 82 (277)
..++++|||+|||+++|+++|+++|+.||.|..|.|+.++.+++||||+|.+.++|++|+..||+..|.|+.|.|.++..
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 45789999999999999999999999999999999988888899999999999999999999999999999999999976
Q ss_pred CCC
Q 023798 83 GRG 85 (277)
Q Consensus 83 ~~~ 85 (277)
...
T Consensus 99 ~~~ 101 (109)
T 1x4a_A 99 GRG 101 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 29
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.9e-21 Score=133.53 Aligned_cols=81 Identities=20% Similarity=0.271 Sum_probs=73.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcC--CCccCCceEEEEE
Q 023798 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD--GYDFDGHRLRVEL 79 (277)
Q Consensus 2 ~~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~--g~~~~g~~l~v~~ 79 (277)
+..++++|||+|||+++|+++|+++|++||+|..|.|+.+ +|||||+|.+.++|+.|+..|+ +..|.|++|.|.|
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 3568899999999999999999999999999999999754 8999999999999999999876 4789999999999
Q ss_pred ccCCCC
Q 023798 80 AHGGRG 85 (277)
Q Consensus 80 a~~~~~ 85 (277)
+.....
T Consensus 89 A~~~~~ 94 (105)
T 1sjq_A 89 SNHKEL 94 (105)
T ss_dssp CSSSSC
T ss_pred cCCCCC
Confidence 976544
No 30
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.85 E-value=1.5e-21 Score=133.18 Aligned_cols=79 Identities=19% Similarity=0.341 Sum_probs=71.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccC-ceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhc-CCCccCCceEEEEEc
Q 023798 6 SRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGR-DGYDFDGHRLRVELA 80 (277)
Q Consensus 6 ~~~l~v~nL~~~~t~~~L~~~F~~~G-~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l-~g~~~~g~~l~v~~a 80 (277)
+++|||+|||+++|+++|+++|++|| +|..|.|+. ++.++|||||+|.+.++|++|+..+ |+..|.|++|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 58999999999999999999999999 899999854 5788999999999999999999877 466799999999999
Q ss_pred cCCC
Q 023798 81 HGGR 84 (277)
Q Consensus 81 ~~~~ 84 (277)
.+..
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7544
No 31
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.85 E-value=1.9e-20 Score=133.59 Aligned_cols=85 Identities=27% Similarity=0.509 Sum_probs=78.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEE
Q 023798 1 MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (277)
Q Consensus 1 ~~~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 78 (277)
|...++++|||+|||+++++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.
T Consensus 2 ~e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp CTTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4557889999999999999999999999999999999965 57788999999999999999999999999999999999
Q ss_pred EccCCCC
Q 023798 79 LAHGGRG 85 (277)
Q Consensus 79 ~a~~~~~ 85 (277)
++.....
T Consensus 82 ~a~~~~~ 88 (116)
T 2fy1_A 82 QAKKPSF 88 (116)
T ss_dssp ECCCSSC
T ss_pred ECCCCCC
Confidence 9986554
No 32
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.85 E-value=4.2e-21 Score=135.45 Aligned_cols=79 Identities=19% Similarity=0.342 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.+.++|||+|||+++++++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5789999999999999999999999999999999954 4678999999999999999999999999999999999998
Q ss_pred cC
Q 023798 81 HG 82 (277)
Q Consensus 81 ~~ 82 (277)
..
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 63
No 33
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3.1e-20 Score=128.89 Aligned_cols=83 Identities=34% Similarity=0.509 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEE
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 79 (277)
..++++|||+|||+++++++|+++|+.||+|..|.|+. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 35789999999999999999999999999999999954 567899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 023798 80 AHGGRG 85 (277)
Q Consensus 80 a~~~~~ 85 (277)
+.....
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 986554
No 34
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=129.16 Aligned_cols=77 Identities=22% Similarity=0.304 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCc--cCCceEEEEEcc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYD--FDGHRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~--~~g~~l~v~~a~ 81 (277)
.|+++|||+|||+.+|+++|.++|++||.|..|.+.. .+|||||+|.+.++|.+|+..||+.. |.|++|.|+|++
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~---~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP---KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc---CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 5899999999999999999999999999999999973 48999999999999999999999876 789999999997
Q ss_pred CC
Q 023798 82 GG 83 (277)
Q Consensus 82 ~~ 83 (277)
..
T Consensus 96 ~k 97 (100)
T 3r27_A 96 SQ 97 (100)
T ss_dssp CS
T ss_pred cc
Confidence 53
No 35
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=135.40 Aligned_cols=80 Identities=19% Similarity=0.392 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEE
Q 023798 4 RASRTLYVGNLPGDIREREVE----DLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~----~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 79 (277)
.++++|||+|||+.+++++|+ ++|++||+|..|.+..++.++|||||+|.+.++|..|+..|||..|.|++|.|.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 578999999999999999876 6999999999999988888999999999999999999999999999999999999
Q ss_pred ccCC
Q 023798 80 AHGG 83 (277)
Q Consensus 80 a~~~ 83 (277)
+...
T Consensus 107 a~~~ 110 (127)
T 2a3j_A 107 SETP 110 (127)
T ss_dssp CCCC
T ss_pred ccCc
Confidence 9753
No 36
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=4.5e-20 Score=127.05 Aligned_cols=82 Identities=29% Similarity=0.509 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.++++|||+|||+.+++++|+++|+.||+|..|.+.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4789999999999999999999999999999999965 4678999999999999999999999999999999999999
Q ss_pred cCCCC
Q 023798 81 HGGRG 85 (277)
Q Consensus 81 ~~~~~ 85 (277)
.....
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 76543
No 37
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.7e-20 Score=128.93 Aligned_cols=83 Identities=34% Similarity=0.506 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecC-CCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~-~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
..+.++|||+|||+.+++++|+++|+.||+|..|.|..+ ..++|||||+|.+.++|++|+..||+..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 457899999999999999999999999999999999663 3468999999999999999999999999999999999998
Q ss_pred CCCC
Q 023798 82 GGRG 85 (277)
Q Consensus 82 ~~~~ 85 (277)
....
T Consensus 92 ~~~~ 95 (103)
T 2cqi_A 92 TPSS 95 (103)
T ss_dssp CTTC
T ss_pred CCcc
Confidence 6543
No 38
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=130.59 Aligned_cols=82 Identities=37% Similarity=0.579 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.++++|||+|||+++++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 4789999999999999999999999999999999965 3678999999999999999999999999999999999999
Q ss_pred cCCCC
Q 023798 81 HGGRG 85 (277)
Q Consensus 81 ~~~~~ 85 (277)
.....
T Consensus 91 ~~~~~ 95 (103)
T 2dnm_A 91 RYGRR 95 (103)
T ss_dssp SSCCS
T ss_pred CcCCC
Confidence 86544
No 39
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.84 E-value=2e-20 Score=129.08 Aligned_cols=80 Identities=29% Similarity=0.618 Sum_probs=74.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
|+++|||+|||.++++++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 679999999999999999999999999999999965 46779999999999999999999999999999999999997
Q ss_pred CCC
Q 023798 82 GGR 84 (277)
Q Consensus 82 ~~~ 84 (277)
...
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 40
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.83 E-value=5.4e-21 Score=130.88 Aligned_cols=79 Identities=20% Similarity=0.345 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCc--eeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCc----cCCce
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGP--IAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYD----FDGHR 74 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~--v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~----~~g~~ 74 (277)
..-+||||+|||+++|+++|+++|++||. |.+|.++. ++.++|||||+|.+.++|++|+..|||.. |+|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 45689999999999999999999999995 67888854 57889999999999999999999999974 89999
Q ss_pred EEEEEccC
Q 023798 75 LRVELAHG 82 (277)
Q Consensus 75 l~v~~a~~ 82 (277)
|.|.||+.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999863
No 41
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.7e-20 Score=129.91 Aligned_cols=83 Identities=27% Similarity=0.460 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec------CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEE
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI------PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~------~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~ 76 (277)
+.++++|||+|||+++++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 35889999999999999999999999999999999954 236789999999999999999999999999999999
Q ss_pred EEEccCCCC
Q 023798 77 VELAHGGRG 85 (277)
Q Consensus 77 v~~a~~~~~ 85 (277)
|.++.....
T Consensus 82 V~~a~~~~~ 90 (98)
T 2cpf_A 82 VRISERATK 90 (98)
T ss_dssp EECSSCSSC
T ss_pred EEEccCCCC
Confidence 999976554
No 42
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.83 E-value=1.7e-20 Score=140.23 Aligned_cols=132 Identities=17% Similarity=0.166 Sum_probs=105.5
Q ss_pred CCCCceEEEEEcChHHHHHHHHhc-CCCccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCC
Q 023798 42 PRPPGYAFVEFEEARDAEDAIRGR-DGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSA 120 (277)
Q Consensus 42 ~~~~g~afV~f~~~~~A~~a~~~l-~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~ 120 (277)
...+|+++|+|.+.++|++|+..| ||..++| .|.+.++........... ...............+|||+|||+.+
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~V~nl~~~~ 85 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSH---HHHHHMHRDSCPLDCKVYVGNLGNNG 85 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSS---SCCCCSCSSSSTTSCEEEEESCCSCC
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccc---cccccccccCCCCCCEEEEeCCCCCC
Confidence 456899999999999999999999 9999999 999998764221111000 00001112334466899999999999
Q ss_pred CHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 121 SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 121 ~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
++++|+++|.+||.|..+.++.+ ..+||||+|.+.++|+.|+..|||..+.|+.+.+
T Consensus 86 t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 86 NKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp SCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred CHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 99999999999999999999887 5679999999999999999999999999955433
No 43
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.3e-20 Score=130.31 Aligned_cols=83 Identities=34% Similarity=0.587 Sum_probs=76.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.+.++|||+|||+.+++++|+++|+.||+|..|.|+. ++.++|||||+|.+.++|++|+..||+..|.|+.|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 5789999999999999999999999999999999954 4678999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 023798 81 HGGRGR 86 (277)
Q Consensus 81 ~~~~~~ 86 (277)
......
T Consensus 90 ~~~~~~ 95 (102)
T 2cqb_A 90 KPMRIK 95 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 865543
No 44
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.3e-20 Score=132.35 Aligned_cols=81 Identities=19% Similarity=0.273 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcC--CCccCCceEEEEEc
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD--GYDFDGHRLRVELA 80 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~--g~~~~g~~l~v~~a 80 (277)
..++++|||+|||+++|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|+..|+ +..|.|++|.|.++
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 458899999999999999999999999999999999754 7999999999999999999887 46899999999999
Q ss_pred cCCCCC
Q 023798 81 HGGRGR 86 (277)
Q Consensus 81 ~~~~~~ 86 (277)
......
T Consensus 105 ~~k~~~ 110 (119)
T 2ad9_A 105 NHKELK 110 (119)
T ss_dssp SSSSCC
T ss_pred cCCCCC
Confidence 765543
No 45
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.83 E-value=1.9e-20 Score=126.16 Aligned_cols=79 Identities=34% Similarity=0.631 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEE
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 79 (277)
..++++|||+|||+++++++|+++|++||+|..|.++. ++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 35889999999999999999999999999999999843 567799999999999999999999999999999999999
Q ss_pred cc
Q 023798 80 AH 81 (277)
Q Consensus 80 a~ 81 (277)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 46
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3e-20 Score=128.13 Aligned_cols=80 Identities=21% Similarity=0.341 Sum_probs=73.9
Q ss_pred CCCeEEEcCCCCCCCHHHHH----HHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 5 ASRTLYVGNLPGDIREREVE----DLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~----~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
+.++|||+|||+++++++|+ ++|++||+|..|.|+.+...+|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 57899999999999999999 99999999999999765444899999999999999999999999999999999999
Q ss_pred cCCC
Q 023798 81 HGGR 84 (277)
Q Consensus 81 ~~~~ 84 (277)
.+..
T Consensus 88 ~~~~ 91 (96)
T 2dgx_A 88 TGAS 91 (96)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7543
No 47
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.7e-20 Score=127.59 Aligned_cols=80 Identities=20% Similarity=0.264 Sum_probs=72.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhc--CCCccCCceEEEEEc
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR--DGYDFDGHRLRVELA 80 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l--~g~~~~g~~l~v~~a 80 (277)
..++++|||+|||+.+++++|+++|++||.|..|.++.+ +|||||+|.+.++|++|+..| ++..|.|++|.|.|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 358899999999999999999999999999999998753 899999999999999999976 467899999999999
Q ss_pred cCCCC
Q 023798 81 HGGRG 85 (277)
Q Consensus 81 ~~~~~ 85 (277)
.....
T Consensus 89 ~~~~~ 93 (101)
T 2cq1_A 89 NHKEL 93 (101)
T ss_dssp SCSSC
T ss_pred CcccC
Confidence 86544
No 48
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.5e-20 Score=129.03 Aligned_cols=82 Identities=30% Similarity=0.474 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.++++|||+|||+++++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++|+..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 5789999999999999999999999999999999955 5678999999999999999999999999999999999999
Q ss_pred cCCCC
Q 023798 81 HGGRG 85 (277)
Q Consensus 81 ~~~~~ 85 (277)
.....
T Consensus 93 ~~~~~ 97 (105)
T 1x5u_A 93 SAHNK 97 (105)
T ss_dssp TTTSC
T ss_pred CCCCc
Confidence 76543
No 49
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=7.1e-20 Score=127.04 Aligned_cols=82 Identities=24% Similarity=0.531 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEE
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 79 (277)
..++++|||+|||+++++++|+++|+.||.|..|.|+. ++.++|||||+|.+.++|++|+. ||+..|.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 35789999999999999999999999999999999965 46789999999999999999999 999999999999999
Q ss_pred ccCCCC
Q 023798 80 AHGGRG 85 (277)
Q Consensus 80 a~~~~~ 85 (277)
+.....
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 976543
No 50
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.5e-20 Score=129.59 Aligned_cols=83 Identities=25% Similarity=0.396 Sum_probs=76.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec-CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
..+.++|||+|||+++|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 45789999999999999999999999999999999954 46778999999999999999999999999999999999998
Q ss_pred CCCC
Q 023798 82 GGRG 85 (277)
Q Consensus 82 ~~~~ 85 (277)
....
T Consensus 92 ~~~~ 95 (103)
T 2d9p_A 92 RKEE 95 (103)
T ss_dssp SCCC
T ss_pred cccc
Confidence 6554
No 51
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.83 E-value=1e-19 Score=137.33 Aligned_cols=136 Identities=16% Similarity=0.086 Sum_probs=98.0
Q ss_pred CCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCC
Q 023798 42 PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSAS 121 (277)
Q Consensus 42 ~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~ 121 (277)
..++|||||+|.+.++|++|+..+++....+..+.+........... ...............+|||+|||+.++
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~v~nl~~~~~ 83 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE------GSHHHHHHMDVEGMTSLKVDNLTYRTS 83 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC------CCCCSSCCCCCCBCCEEEEESCCTTCC
T ss_pred ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc------cccccccccCCCCCCEEEEeCCCCCCC
Confidence 35789999999999999999988776443333333322111000000 000001112334568999999999999
Q ss_pred HHHHHHHHhhcCceeEEEEEecC----CCCEEEEEEcChhhHHHHHHHcCCceeccceeeeEEEeecccc
Q 023798 122 WQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDH 187 (277)
Q Consensus 122 ~~~l~~~f~~~g~i~~~~~~~~~----~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~ 187 (277)
+++|+++|.+||.|..+.++.+. ..+||||+|.+.++|++|++.|||..+.|+ .|.+....+
T Consensus 84 ~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~v~~a~~ 149 (158)
T 2kn4_A 84 PDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR----ELRVQMARY 149 (158)
T ss_dssp HHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSS----EEEEEEECC
T ss_pred HHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCe----EEEEEECCC
Confidence 99999999999999999998874 346999999999999999999999999994 455554443
No 52
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.83 E-value=8.8e-21 Score=131.16 Aligned_cols=83 Identities=29% Similarity=0.546 Sum_probs=75.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHH----HHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEE
Q 023798 1 MSSRASRTLYVGNLPGDIREREVE----DLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLR 76 (277)
Q Consensus 1 ~~~~~~~~l~v~nL~~~~t~~~L~----~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~ 76 (277)
|+..++++|||+|||+++++++|+ ++|++||.|..|.+..++.++|||||+|.+.++|..|+..|||..|.|+.|.
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 456789999999999999999999 9999999999999976777789999999999999999999999999999999
Q ss_pred EEEccCC
Q 023798 77 VELAHGG 83 (277)
Q Consensus 77 v~~a~~~ 83 (277)
|.++...
T Consensus 83 v~~a~~~ 89 (97)
T 1nu4_A 83 IQYAKTD 89 (97)
T ss_dssp EEECSSC
T ss_pred EEEccCC
Confidence 9999754
No 53
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.4e-20 Score=130.06 Aligned_cols=79 Identities=18% Similarity=0.176 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCC--ccCCceEEEEE
Q 023798 3 SRASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY--DFDGHRLRVEL 79 (277)
Q Consensus 3 ~~~~~~l~v~nL~~-~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~--~~~g~~l~v~~ 79 (277)
..++++|||+|||+ .+|+++|+++|++||.|..|.|+.+ ++||||+|.+.++|.+|+..||+. .|.|++|.|.+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK---INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS---SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 35899999999999 9999999999999999999999743 689999999999999999998864 49999999999
Q ss_pred ccCCC
Q 023798 80 AHGGR 84 (277)
Q Consensus 80 a~~~~ 84 (277)
+....
T Consensus 89 a~~~~ 93 (102)
T 1x4d_A 89 SQKYK 93 (102)
T ss_dssp ECCCT
T ss_pred CCCCC
Confidence 98543
No 54
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.7e-20 Score=128.70 Aligned_cols=82 Identities=34% Similarity=0.596 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.++++|||+|||+++++++|+++|+.||+|..|.|+. ++.++|||||+|.+.++|++|+..||+..|.|+.|.|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5789999999999999999999999999999999965 4678999999999999999999999999999999999999
Q ss_pred cCCCC
Q 023798 81 HGGRG 85 (277)
Q Consensus 81 ~~~~~ 85 (277)
.....
T Consensus 90 ~~~~~ 94 (102)
T 1x5s_A 90 GKSSD 94 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 76543
No 55
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.83 E-value=3.5e-20 Score=126.84 Aligned_cols=83 Identities=28% Similarity=0.465 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec-CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
..++++|||+|||+++++++|+++|+.||+|..|.+.. ++.++|||||+|.+.++|++|+..||+..|.|+.|.|.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 46889999999999999999999999999999999964 56778999999999999999999999999999999999997
Q ss_pred CCCC
Q 023798 82 GGRG 85 (277)
Q Consensus 82 ~~~~ 85 (277)
....
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6543
No 56
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.4e-20 Score=127.38 Aligned_cols=82 Identities=24% Similarity=0.422 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEE-Eeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEE
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHI-DLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v-~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 79 (277)
.++++|||+|||+++++++|+++|+.||.|..| .|+. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 478999999999999999999999999999999 8854 567899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 023798 80 AHGGRG 85 (277)
Q Consensus 80 a~~~~~ 85 (277)
+.....
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 976543
No 57
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.83 E-value=3e-20 Score=124.60 Aligned_cols=78 Identities=24% Similarity=0.454 Sum_probs=72.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccC
Q 023798 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (277)
Q Consensus 6 ~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~ 82 (277)
+.+|||+|||+++++++|+++|+.||+|..+.++. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 47899999999999999999999999999999964 467799999999999999999999999999999999999975
Q ss_pred C
Q 023798 83 G 83 (277)
Q Consensus 83 ~ 83 (277)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 58
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.83 E-value=9.2e-20 Score=130.07 Aligned_cols=84 Identities=25% Similarity=0.436 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.+.++|||+|||+.+++++|+++|..||.|..|.|+. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 4789999999999999999999999999999999954 5677899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 023798 81 HGGRGRS 87 (277)
Q Consensus 81 ~~~~~~~ 87 (277)
.......
T Consensus 93 ~~~~~~~ 99 (115)
T 2dgo_A 93 TRKPPAP 99 (115)
T ss_dssp SCCCCCS
T ss_pred cCCCCCC
Confidence 8665443
No 59
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=4.6e-20 Score=126.75 Aligned_cols=78 Identities=23% Similarity=0.462 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecC---CCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP---PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~---~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.++++|||+|||+.+++++|+++|+.||+|..|.+..+ +.++|||||+|.+.++|++|+..|||..|.|+.|.|.|+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 46799999999999999999999999999999999653 678999999999999999999999999999999999997
Q ss_pred c
Q 023798 81 H 81 (277)
Q Consensus 81 ~ 81 (277)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 60
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.83 E-value=1.2e-19 Score=126.81 Aligned_cols=79 Identities=24% Similarity=0.496 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~ 83 (277)
.++++|||+|||+++|+++|+++|+.||.|..|.+. ++||||+|.+.++|++|+..||+..|.|+.|.|.++...
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 467999999999999999999999999999999987 679999999999999999999999999999999999866
Q ss_pred CCCC
Q 023798 84 RGRS 87 (277)
Q Consensus 84 ~~~~ 87 (277)
....
T Consensus 84 ~~~~ 87 (103)
T 2dgu_A 84 DQKR 87 (103)
T ss_dssp CCCC
T ss_pred cccc
Confidence 5443
No 61
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-19 Score=126.83 Aligned_cols=82 Identities=24% Similarity=0.463 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecC-CCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccC
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~-~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~ 82 (277)
.++++|||+|||+++++++|+++|+.||.|..|.|+.+ ..++|||||+|.+.++|++|+..||+..|.|+.|.|.++..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 57899999999999999999999999999999999654 34789999999999999999999999999999999999976
Q ss_pred CCC
Q 023798 83 GRG 85 (277)
Q Consensus 83 ~~~ 85 (277)
...
T Consensus 93 ~~~ 95 (103)
T 2cq3_A 93 RVM 95 (103)
T ss_dssp SCC
T ss_pred CCC
Confidence 544
No 62
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=7.5e-20 Score=127.35 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCC--ccCCceEEEEEcc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY--DFDGHRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~--~~~g~~l~v~~a~ 81 (277)
.|+++|||+|||+.+++++|+++|++||.|..|.|.. .+|||||+|.+.++|.+|+..|++. .|.|++|.|.|+.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP---FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 5789999999999999999999999999999999874 3899999999999999999988654 5999999999997
Q ss_pred CCCC
Q 023798 82 GGRG 85 (277)
Q Consensus 82 ~~~~ 85 (277)
....
T Consensus 90 ~~~~ 93 (104)
T 1wex_A 90 SKRI 93 (104)
T ss_dssp SSSC
T ss_pred Cccc
Confidence 6543
No 63
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=128.01 Aligned_cols=82 Identities=26% Similarity=0.467 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec----CCCCCceEEEEEcChHHHHHHHHhc-CCCccCCceEEEE
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI----PPRPPGYAFVEFEEARDAEDAIRGR-DGYDFDGHRLRVE 78 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~g~afV~f~~~~~A~~a~~~l-~g~~~~g~~l~v~ 78 (277)
.++++|||+|||+++++++|+++|+.||+|..|.|+. ++.++|||||+|.+.++|++|+..| |+..|.|+.|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 5789999999999999999999999999999999943 5678999999999999999999999 9999999999999
Q ss_pred EccCCCC
Q 023798 79 LAHGGRG 85 (277)
Q Consensus 79 ~a~~~~~ 85 (277)
++.....
T Consensus 93 ~a~~~~~ 99 (107)
T 2cph_A 93 WADSEVT 99 (107)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9976543
No 64
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=3.2e-20 Score=128.83 Aligned_cols=83 Identities=24% Similarity=0.418 Sum_probs=75.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCcee-EEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCce---
Q 023798 2 SSRASRTLYVGNLPGDIREREVEDLFYKYGPIA-HIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR--- 74 (277)
Q Consensus 2 ~~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~-~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~--- 74 (277)
...++++|||+|||+++++++|+++|+.||+|. .|.++. ++.++|||||+|.+.++|++|+..|||..|.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 356889999999999999999999999999999 999854 4677899999999999999999999999999999
Q ss_pred -EEEEEccCCC
Q 023798 75 -LRVELAHGGR 84 (277)
Q Consensus 75 -l~v~~a~~~~ 84 (277)
|.|.|+....
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999997544
No 65
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=6.8e-20 Score=127.37 Aligned_cols=81 Identities=23% Similarity=0.482 Sum_probs=74.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
.++++|||+|||+++++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 4689999999999999999999999999999999955 46678999999999999999999999999999999999997
Q ss_pred CCC
Q 023798 82 GGR 84 (277)
Q Consensus 82 ~~~ 84 (277)
+..
T Consensus 95 ~~~ 97 (100)
T 2do4_A 95 SGP 97 (100)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 66
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.6e-19 Score=127.19 Aligned_cols=78 Identities=23% Similarity=0.305 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCC-----ceEEEE
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG-----HRLRVE 78 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g-----~~l~v~ 78 (277)
++.++|||+|||+++++++|+++|..||+|..|.|+.+ |||||+|.+.++|++||..||+..|.| +.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 46799999999999999999999999999999999765 899999999999999999999999999 999999
Q ss_pred EccCCCC
Q 023798 79 LAHGGRG 85 (277)
Q Consensus 79 ~a~~~~~ 85 (277)
++.....
T Consensus 89 ~a~~~~~ 95 (108)
T 1x4c_A 89 VDGPRSP 95 (108)
T ss_dssp ESSCCSC
T ss_pred eCCCCCC
Confidence 9986443
No 67
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=2.9e-20 Score=125.85 Aligned_cols=79 Identities=27% Similarity=0.461 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.+.++|||+|||+++++++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 4678999999999999999999999999999999954 5677899999999999999999999999999999999998
Q ss_pred cC
Q 023798 81 HG 82 (277)
Q Consensus 81 ~~ 82 (277)
..
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 64
No 68
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.3e-20 Score=129.69 Aligned_cols=82 Identities=34% Similarity=0.574 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.++++|||+|||+++++++|+++|+.||+|..|.|+. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 4789999999999999999999999999999999954 5678899999999999999999999999999999999999
Q ss_pred cCCCC
Q 023798 81 HGGRG 85 (277)
Q Consensus 81 ~~~~~ 85 (277)
.....
T Consensus 93 ~~~~~ 97 (103)
T 2cq0_A 93 KPSTN 97 (103)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 76543
No 69
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=123.67 Aligned_cols=78 Identities=35% Similarity=0.622 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccC
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~ 82 (277)
..++++|||+|||+++++++|+++|+.||+|..|.+. ++||||+|.+.++|++|+..||+..|.|+.|.|.++..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 3578999999999999999999999999999999998 78999999999999999999999999999999999976
Q ss_pred CCC
Q 023798 83 GRG 85 (277)
Q Consensus 83 ~~~ 85 (277)
...
T Consensus 80 ~~~ 82 (90)
T 2dnq_A 80 KSK 82 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 70
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.82 E-value=5.8e-20 Score=124.64 Aligned_cols=80 Identities=28% Similarity=0.556 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCC---C-CCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEE
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPP---R-PPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~---~-~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 79 (277)
..+++|||+|||+++++++|+++|+.||.|..|.++.+. . ++|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 357899999999999999999999999999999995432 2 789999999999999999999999999999999999
Q ss_pred ccCC
Q 023798 80 AHGG 83 (277)
Q Consensus 80 a~~~ 83 (277)
+.+.
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 9653
No 71
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.2e-20 Score=127.64 Aligned_cols=81 Identities=25% Similarity=0.489 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecC----CCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEE
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP----PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 78 (277)
..+.++|||+|||+++++++|+++|+.|| |..|.|+.+ +.++|||||+|.+.++|++|| .||+..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 35789999999999999999999999999 999999654 677999999999999999999 899999999999999
Q ss_pred EccCCCC
Q 023798 79 LAHGGRG 85 (277)
Q Consensus 79 ~a~~~~~ 85 (277)
++.....
T Consensus 90 ~a~~~~~ 96 (104)
T 1wi8_A 90 VADQAQD 96 (104)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9976543
No 72
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.8e-19 Score=128.32 Aligned_cols=83 Identities=20% Similarity=0.288 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
..++++|||+|||+++++++|+++|..||.|..|.|.. ++.++|||||+|.+.++|++|+..||+..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 35789999999999999999999999999999999954 4667899999999999999999999999999999999999
Q ss_pred cCCCC
Q 023798 81 HGGRG 85 (277)
Q Consensus 81 ~~~~~ 85 (277)
.....
T Consensus 92 ~~~~~ 96 (114)
T 2do0_A 92 ERALP 96 (114)
T ss_dssp SCCCC
T ss_pred ccCCC
Confidence 75443
No 73
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.1e-19 Score=127.52 Aligned_cols=82 Identities=24% Similarity=0.410 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEE
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 79 (277)
..+.++|||+|||+++++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++||..||+ .|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 35789999999999999999999999999999999955 467899999999999999999999998 89999999999
Q ss_pred ccCCCC
Q 023798 80 AHGGRG 85 (277)
Q Consensus 80 a~~~~~ 85 (277)
+.....
T Consensus 93 a~~~~~ 98 (116)
T 2cqd_A 93 AYLGAK 98 (116)
T ss_dssp STTTCC
T ss_pred cccCCC
Confidence 975543
No 74
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.82 E-value=5.8e-20 Score=131.10 Aligned_cols=82 Identities=20% Similarity=0.473 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.+.++|||+|||+++++++|+++|+.||.|..|.|+. ++.++|||||+|.+.++|++|+..||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 4678999999999999999999999999999999954 5677899999999999999999999999999999999999
Q ss_pred cCCCC
Q 023798 81 HGGRG 85 (277)
Q Consensus 81 ~~~~~ 85 (277)
.....
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 76544
No 75
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.5e-19 Score=123.62 Aligned_cols=78 Identities=38% Similarity=0.649 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccC
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~ 82 (277)
..++++|||+|||+++++++|+++|+.||.|..|.+. ++||||+|.+.++|++|+..|||..|.|+.|.|.++..
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 4678999999999999999999999999999999997 56999999999999999999999999999999999976
Q ss_pred CCC
Q 023798 83 GRG 85 (277)
Q Consensus 83 ~~~ 85 (277)
...
T Consensus 82 ~~~ 84 (92)
T 2dgt_A 82 RLR 84 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 76
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.5e-20 Score=129.70 Aligned_cols=80 Identities=28% Similarity=0.517 Sum_probs=73.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.++++|||+|||+++++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 4668899999999999999999999999999999964 3677899999999999999999999999999999999999
Q ss_pred cCC
Q 023798 81 HGG 83 (277)
Q Consensus 81 ~~~ 83 (277)
...
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 753
No 77
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.7e-19 Score=127.87 Aligned_cols=82 Identities=22% Similarity=0.469 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcC------CCccCCce
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRD------GYDFDGHR 74 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~------g~~~~g~~ 74 (277)
.++++|||+|||+++++++|+++|..||+|..|.|+. ++.++|||||+|.+.++|++|+..|| +..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 4789999999999999999999999999999999964 46789999999999999999999999 99999999
Q ss_pred EEEEEccCCCC
Q 023798 75 LRVELAHGGRG 85 (277)
Q Consensus 75 l~v~~a~~~~~ 85 (277)
|.|.++.....
T Consensus 93 l~v~~a~~~~~ 103 (111)
T 1x4h_A 93 LKVDLAVTRDE 103 (111)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCcc
Confidence 99999976543
No 78
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.81 E-value=1.2e-19 Score=127.36 Aligned_cols=82 Identities=28% Similarity=0.383 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCccCC---ceEEEE
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG---HRLRVE 78 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g---~~l~v~ 78 (277)
.++++|||+|||+++++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.| +.|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 4689999999999999999999999999999999954 46678999999999999999999999999998 999999
Q ss_pred EccCCCC
Q 023798 79 LAHGGRG 85 (277)
Q Consensus 79 ~a~~~~~ 85 (277)
++.....
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9986543
No 79
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.81 E-value=1.4e-19 Score=127.15 Aligned_cols=83 Identities=19% Similarity=0.346 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCcc---CCceEE
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDF---DGHRLR 76 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~---~g~~l~ 76 (277)
..++++|||+|||+++++++|+++|+.||+|..|.|+. ++.++|||||+|.+.++|++|+..||+..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 35789999999999999999999999999999999965 467899999999999999999999999988 899999
Q ss_pred EEEccCCCC
Q 023798 77 VELAHGGRG 85 (277)
Q Consensus 77 v~~a~~~~~ 85 (277)
|.++.....
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999976543
No 80
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=124.92 Aligned_cols=77 Identities=26% Similarity=0.486 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccC--CceEEEEEcc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD--GHRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~--g~~l~v~~a~ 81 (277)
.++++|||+|||+++++++|+++|+.||+|..|.+... +|||||+|.+.++|++|+..||+..|. |+.|.|.|+.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 57899999999999999999999999999999999643 789999999999999999999999999 9999999997
Q ss_pred CC
Q 023798 82 GG 83 (277)
Q Consensus 82 ~~ 83 (277)
..
T Consensus 92 ~~ 93 (97)
T 1why_A 92 SG 93 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 81
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.81 E-value=6.7e-20 Score=128.91 Aligned_cols=79 Identities=16% Similarity=0.210 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccC-ceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccC
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G-~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~ 82 (277)
...++|||+|||+++++++|+++|+.|| +|..+.+.. ..++|||||+|.+.++|++|+..|||..|.|+.|.|.++..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~-~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT-RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS-CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc-CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 4567999999999999999999999999 899999853 35789999999999999999999999999999999999864
Q ss_pred C
Q 023798 83 G 83 (277)
Q Consensus 83 ~ 83 (277)
.
T Consensus 105 ~ 105 (111)
T 2jvr_A 105 P 105 (111)
T ss_dssp -
T ss_pred C
Confidence 3
No 82
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6e-20 Score=126.44 Aligned_cols=79 Identities=35% Similarity=0.574 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.++++|||+|||+.+++++|+++|+.||+|..|.++. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 5788999999999999999999999999999999964 3677899999999999999999999999999999999998
Q ss_pred cC
Q 023798 81 HG 82 (277)
Q Consensus 81 ~~ 82 (277)
..
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 63
No 83
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=4.9e-20 Score=129.19 Aligned_cols=79 Identities=27% Similarity=0.348 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcC--CCccCCceEEEEE
Q 023798 3 SRASRTLYVGNLPGD-IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD--GYDFDGHRLRVEL 79 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~-~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~--g~~~~g~~l~v~~ 79 (277)
..++++|||+|||++ +++++|+++|++||.|..|.|. .++|||||+|.+.++|+.|+..|| +..|.|+.|.|.+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~---~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM---RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 468999999999998 9999999999999999999997 358999999999999999999886 4569999999999
Q ss_pred ccCCC
Q 023798 80 AHGGR 84 (277)
Q Consensus 80 a~~~~ 84 (277)
+....
T Consensus 99 a~~~~ 103 (112)
T 1x4f_A 99 SEKYK 103 (112)
T ss_dssp ECSCS
T ss_pred Ccccc
Confidence 97544
No 84
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=122.95 Aligned_cols=77 Identities=31% Similarity=0.565 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~ 83 (277)
.++++|||+|||+++|+++|+++|+.||.|..|.+. ++||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 578999999999999999999999999999999997 569999999999999999999999999999999999765
Q ss_pred CC
Q 023798 84 RG 85 (277)
Q Consensus 84 ~~ 85 (277)
..
T Consensus 82 ~~ 83 (90)
T 2dnp_A 82 QK 83 (90)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 85
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.81 E-value=6.9e-20 Score=126.13 Aligned_cols=79 Identities=28% Similarity=0.502 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
..++++|||+|||+.+++++|+++|+.||+|..|.|+. ++.++|||||+|.+.++|++|+..||+..|.|+.|.|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 35779999999999999999999999999999999954 3667899999999999999999999999999999999998
Q ss_pred c
Q 023798 81 H 81 (277)
Q Consensus 81 ~ 81 (277)
.
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 86
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.81 E-value=6.7e-20 Score=133.10 Aligned_cols=81 Identities=36% Similarity=0.600 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.++++|||+|||+++++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.|+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 5789999999999999999999999999999999965 4678999999999999999999999999999999999998
Q ss_pred cCCC
Q 023798 81 HGGR 84 (277)
Q Consensus 81 ~~~~ 84 (277)
....
T Consensus 124 ~~~~ 127 (129)
T 2kxn_B 124 ITKR 127 (129)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 7543
No 87
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9.4e-20 Score=126.85 Aligned_cols=78 Identities=17% Similarity=0.365 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecC--CCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~--~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
.+.++|||+|||+++|+++|+++|+.||+|..|.|+.+ +.++|||||+|.+.++|++|+. +|+..|.|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 35689999999999999999999999999999999653 6789999999999999999999 99999999999999976
Q ss_pred C
Q 023798 82 G 82 (277)
Q Consensus 82 ~ 82 (277)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 3
No 88
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.81 E-value=1.5e-20 Score=128.01 Aligned_cols=78 Identities=17% Similarity=0.223 Sum_probs=67.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccC--ceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 7 RTLYVGNLPGDIREREVEDLFYKYG--PIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~L~~~F~~~G--~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
.+|||+|||+++|+++|+++|+.|| .|..|.++. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 999999854 57889999999999999999999999999999999999997
Q ss_pred CCC
Q 023798 82 GGR 84 (277)
Q Consensus 82 ~~~ 84 (277)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 544
No 89
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=126.49 Aligned_cols=80 Identities=16% Similarity=0.280 Sum_probs=72.2
Q ss_pred CCCCCCeEEE--cCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCcc-----CCce
Q 023798 2 SSRASRTLYV--GNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF-----DGHR 74 (277)
Q Consensus 2 ~~~~~~~l~v--~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~-----~g~~ 74 (277)
+..|+++||| +||++++++++|+++|++||+|..|.|+. .+|||||+|.+.++|++|+..|||..| .|++
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~---~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT---TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 4578999999 77999999999999999999999998863 379999999999999999999999988 6889
Q ss_pred EEEEEccCCC
Q 023798 75 LRVELAHGGR 84 (277)
Q Consensus 75 l~v~~a~~~~ 84 (277)
|.|.++....
T Consensus 98 l~v~~a~~~p 107 (114)
T 2cq2_A 98 LYLNFVEKVQ 107 (114)
T ss_dssp CEEEEESCCC
T ss_pred EEEEecccCc
Confidence 9999987544
No 90
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.2e-19 Score=125.97 Aligned_cols=79 Identities=23% Similarity=0.445 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~ 83 (277)
.+.++|||+|||+.+++++|+++|+.||.|..|.|..+ +|||||+|.+.++|++|+..|||..|.|+.|.|.|+...
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 46789999999999999999999999999999999755 899999999999999999999999999999999999765
Q ss_pred CC
Q 023798 84 RG 85 (277)
Q Consensus 84 ~~ 85 (277)
..
T Consensus 100 ~~ 101 (109)
T 1x4g_A 100 PD 101 (109)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 91
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.80 E-value=1.2e-19 Score=128.45 Aligned_cols=80 Identities=26% Similarity=0.476 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.++++|||+|||+.+++++|+++|+.||+|..|.++. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 4678999999999999999999999999999999954 4678999999999999999999999999999999999999
Q ss_pred cCC
Q 023798 81 HGG 83 (277)
Q Consensus 81 ~~~ 83 (277)
...
T Consensus 104 ~~~ 106 (110)
T 1oo0_B 104 FVK 106 (110)
T ss_dssp EES
T ss_pred ccC
Confidence 753
No 92
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=2.1e-19 Score=125.55 Aligned_cols=81 Identities=28% Similarity=0.532 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEE
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 79 (277)
..+.++|||+|||+++++++|+++|+.|| |..|.|+. ++.++|||||+|.+.++|++|+ .||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 45789999999999999999999999997 99999964 4677899999999999999999 7999999999999999
Q ss_pred ccCCCC
Q 023798 80 AHGGRG 85 (277)
Q Consensus 80 a~~~~~ 85 (277)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2dng_A 90 AEGRKQ 95 (103)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 976543
No 93
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.80 E-value=2e-19 Score=126.00 Aligned_cols=80 Identities=26% Similarity=0.436 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCC------CHHHHHHHHhccCceeEEEee-cCCCCCceEEEEEcChHHHHHHHHhcCCCccCCc-eE
Q 023798 4 RASRTLYVGNLPGDI------REREVEDLFYKYGPIAHIDLK-IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH-RL 75 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~------t~~~L~~~F~~~G~v~~v~~~-~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~-~l 75 (277)
..+++|||+|||+.+ ++++|+++|++||.|..|.|+ .++.++|||||+|.+.++|++|+..|||..|.|+ .|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 357899999999999 789999999999999999995 3678899999999999999999999999999999 99
Q ss_pred EEEEccCC
Q 023798 76 RVELAHGG 83 (277)
Q Consensus 76 ~v~~a~~~ 83 (277)
.|.++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99998643
No 94
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.80 E-value=3.8e-20 Score=128.53 Aligned_cols=78 Identities=24% Similarity=0.425 Sum_probs=72.8
Q ss_pred CCCeEEEcCCCC------CCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCC-ce
Q 023798 5 ASRTLYVGNLPG------DIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG-HR 74 (277)
Q Consensus 5 ~~~~l~v~nL~~------~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g-~~ 74 (277)
.+++|||+|||+ ++++++|+++|++||.|..|.|+. ++.++|||||+|.+.++|++|+..|||..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 478999999999 999999999999999999999954 47789999999999999999999999999999 99
Q ss_pred EEEEEccC
Q 023798 75 LRVELAHG 82 (277)
Q Consensus 75 l~v~~a~~ 82 (277)
|.|.++.+
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 99999853
No 95
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2e-19 Score=125.87 Aligned_cols=83 Identities=22% Similarity=0.385 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhc-cCceeEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCc-cCCceEEEE
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYK-YGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYD-FDGHRLRVE 78 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~-~G~v~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~-~~g~~l~v~ 78 (277)
..++++|||+|||+++|+++|+++|.. ||.|..|.|+. ++.++|||||+|.+.++|++|+..||+.. |.|+.|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 357899999999999999999999999 99999999954 56778999999999999999999999999 999999999
Q ss_pred EccCCCC
Q 023798 79 LAHGGRG 85 (277)
Q Consensus 79 ~a~~~~~ 85 (277)
++.....
T Consensus 86 ~a~~~~~ 92 (104)
T 2dhg_A 86 VAIPKAS 92 (104)
T ss_dssp BCCCCCS
T ss_pred EccCCCc
Confidence 9975443
No 96
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.80 E-value=1.2e-19 Score=130.04 Aligned_cols=79 Identities=22% Similarity=0.495 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEE
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 79 (277)
..+.++|||+|||+++++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|+|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34679999999999999999999999999999999964 467899999999999999999999999999999999998
Q ss_pred cc
Q 023798 80 AH 81 (277)
Q Consensus 80 a~ 81 (277)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 73
No 97
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.2e-19 Score=128.05 Aligned_cols=81 Identities=25% Similarity=0.437 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCce----eEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEE
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPI----AHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v----~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 79 (277)
.++++|||+|||+++|+++|+++|..||.| ..+.+. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 467999999999999999999999999998 455554 788899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 023798 80 AHGGRG 85 (277)
Q Consensus 80 a~~~~~ 85 (277)
+.....
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 986554
No 98
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.80 E-value=1.6e-19 Score=131.01 Aligned_cols=83 Identities=27% Similarity=0.485 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.++++|||+|||+.+|+++|+++|+.||.|..|.|+. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 3678999999999999999999999999999999953 5677999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 023798 81 HGGRGR 86 (277)
Q Consensus 81 ~~~~~~ 86 (277)
......
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 765443
No 99
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.80 E-value=2.6e-19 Score=121.64 Aligned_cols=78 Identities=23% Similarity=0.485 Sum_probs=72.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
+.++|||+|||+++++++|+++|+.||+|..|.+.. ++.++|||||+|.+.++|++|+ .|||..|.|+.|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 468999999999999999999999999999999953 5678999999999999999999 799999999999999997
Q ss_pred CC
Q 023798 82 GG 83 (277)
Q Consensus 82 ~~ 83 (277)
..
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 100
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=1.3e-19 Score=127.61 Aligned_cols=79 Identities=28% Similarity=0.557 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.++++|||+|||+.+++++|+++|+.||+|..|.++. ++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 4789999999999999999999999999999999954 4677899999999999999999999999999999999998
Q ss_pred cC
Q 023798 81 HG 82 (277)
Q Consensus 81 ~~ 82 (277)
..
T Consensus 104 ~~ 105 (108)
T 2jrs_A 104 TE 105 (108)
T ss_dssp CS
T ss_pred cc
Confidence 64
No 101
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=1.5e-19 Score=125.42 Aligned_cols=79 Identities=29% Similarity=0.452 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCceeE--------EEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccC
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAH--------IDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~--------v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~ 71 (277)
..+.++|||+|||+++++++|+++|+.||.|.. |.+.. ++.++|||||+|.+.++|++|+..|||..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 357899999999999999999999999999999 88854 4678999999999999999999999999999
Q ss_pred CceEEEEEcc
Q 023798 72 GHRLRVELAH 81 (277)
Q Consensus 72 g~~l~v~~a~ 81 (277)
|+.|.|.+|.
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999973
No 102
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=7.1e-20 Score=129.66 Aligned_cols=81 Identities=23% Similarity=0.360 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHH---HHHhccCceeEEEeecCC------CCCceEEEEEcChHHHHHHHHhcCCCccCCce
Q 023798 4 RASRTLYVGNLPGDIREREVE---DLFYKYGPIAHIDLKIPP------RPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~---~~F~~~G~v~~v~~~~~~------~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~ 74 (277)
...++|||+|||+++++++|. ++|++||+|..|.|+.+. .++|||||+|.+.++|++|+..|||..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 367899999999999999999 999999999999996532 56699999999999999999999999999999
Q ss_pred EEEEEccCCC
Q 023798 75 LRVELAHGGR 84 (277)
Q Consensus 75 l~v~~a~~~~ 84 (277)
|.|.++....
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999997544
No 103
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.80 E-value=1.3e-19 Score=127.55 Aligned_cols=78 Identities=26% Similarity=0.472 Sum_probs=72.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
.++++|||+|||+.+++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 4689999999999999999999999999999999854 56778999999999999999999999999999999999984
No 104
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.2e-19 Score=127.62 Aligned_cols=82 Identities=28% Similarity=0.493 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCcee--------EEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCC
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIA--------HIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~--------~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 72 (277)
.++++|||+|||+++++++|+++|+.||.|. .|.|.. ++.++|||||+|.+.++|++|+..|||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4789999999999999999999999999998 588854 46789999999999999999999999999999
Q ss_pred ceEEEEEccCCCC
Q 023798 73 HRLRVELAHGGRG 85 (277)
Q Consensus 73 ~~l~v~~a~~~~~ 85 (277)
+.|.|.++.....
T Consensus 93 ~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 93 SKLKVSLARKKPP 105 (113)
T ss_dssp EECEEECSSCCCC
T ss_pred CEEEEEECCCCCC
Confidence 9999999976544
No 105
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.5e-19 Score=127.92 Aligned_cols=78 Identities=27% Similarity=0.328 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~ 83 (277)
+++++|||+|||+.+++++|+++|++||.|..|.|+. .++||||+|.+.++|+.|+..|||..|.|+.|.|.|+...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE---GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS---SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 3568999999999999999999999999999999863 5789999999999999999999999999999999999754
Q ss_pred C
Q 023798 84 R 84 (277)
Q Consensus 84 ~ 84 (277)
.
T Consensus 85 ~ 85 (111)
T 1whx_A 85 V 85 (111)
T ss_dssp T
T ss_pred c
Confidence 4
No 106
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.80 E-value=3.1e-19 Score=123.14 Aligned_cols=75 Identities=27% Similarity=0.550 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 3 SRASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 3 ~~~~~~l~v~nL~~-~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
..++++|||+|||+ ++++++|+++|+.||.|..|.+. +|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 35789999999998 99999999999999999999995 8999999999999999999999999999999999986
Q ss_pred C
Q 023798 82 G 82 (277)
Q Consensus 82 ~ 82 (277)
.
T Consensus 94 ~ 94 (97)
T 2xnq_A 94 S 94 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 107
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.2e-19 Score=123.69 Aligned_cols=78 Identities=35% Similarity=0.531 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~ 83 (277)
.++++|||+|||+.+++++|+++|+.||+|..|.+.. .+|||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~---~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK---DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET---TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec---CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 4678999999999999999999999999999999974 3799999999999999999999999999999999999764
Q ss_pred C
Q 023798 84 R 84 (277)
Q Consensus 84 ~ 84 (277)
.
T Consensus 90 ~ 90 (99)
T 2cpj_A 90 A 90 (99)
T ss_dssp S
T ss_pred C
Confidence 4
No 108
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.5e-19 Score=124.75 Aligned_cols=80 Identities=28% Similarity=0.411 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~ 83 (277)
.++++|||+|||+++++++|+++|..||.|.-+ ...++.++|||||+|.+.++|++|+..||+..|.|+.|.|.++...
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~-~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIKVP-QNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEECC-BCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEE-ECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 478999999999999999999999999988322 2346788999999999999999999999999999999999999765
Q ss_pred C
Q 023798 84 R 84 (277)
Q Consensus 84 ~ 84 (277)
.
T Consensus 92 ~ 92 (101)
T 2fc9_A 92 G 92 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 109
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.80 E-value=9e-20 Score=121.64 Aligned_cols=72 Identities=28% Similarity=0.505 Sum_probs=66.8
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHHhccCceeEEEee-cCCCCCceEEEEEcChHHHHHHHHhcCCCccCCc-eEEE
Q 023798 6 SRTLYVGNLPGDI------REREVEDLFYKYGPIAHIDLK-IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH-RLRV 77 (277)
Q Consensus 6 ~~~l~v~nL~~~~------t~~~L~~~F~~~G~v~~v~~~-~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~-~l~v 77 (277)
+++|||+|||+.+ ++++|+++|++||+|..|.++ .++.++|||||+|.+.++|++|+..|||..|.|+ +|.|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 779999999999999999985 3678899999999999999999999999999999 8865
No 110
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.80 E-value=4.3e-19 Score=130.93 Aligned_cols=83 Identities=34% Similarity=0.665 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.+.++|||+|||.++++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4678999999999999999999999999999999954 4567999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 023798 81 HGGRGR 86 (277)
Q Consensus 81 ~~~~~~ 86 (277)
......
T Consensus 120 ~~~~~~ 125 (139)
T 1u6f_A 120 ASGHQR 125 (139)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 865543
No 111
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2e-19 Score=126.91 Aligned_cols=79 Identities=25% Similarity=0.504 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecC-CCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccC
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~-~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~ 82 (277)
.++++|||+|||.++++++|+++|+.||+|..|.+..+ +.++|||||+|.+.++|++|+..|||..|.|+.|.|.++..
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 47899999999999999999999999999999999543 45789999999999999999999999999999999999864
No 112
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.2e-19 Score=122.24 Aligned_cols=76 Identities=30% Similarity=0.462 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcc--CceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKY--GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~--G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
.++++|||+|||+++++++|+++|+.| |.|..|.+. +|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 478999999999999999999999999 999999886 7899999999999999999999999999999999997
Q ss_pred CCC
Q 023798 82 GGR 84 (277)
Q Consensus 82 ~~~ 84 (277)
...
T Consensus 88 ~~~ 90 (99)
T 2cpd_A 88 PVD 90 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 113
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.80 E-value=2.9e-19 Score=120.85 Aligned_cols=77 Identities=23% Similarity=0.533 Sum_probs=70.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEE
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 79 (277)
..+.++|||+|||+++++++|+++|++||+|..|.++. ++.++|||||+|.+.++|++|+. +++..|.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 35789999999999999999999999999999999954 47789999999999999999997 688899999999987
Q ss_pred c
Q 023798 80 A 80 (277)
Q Consensus 80 a 80 (277)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 114
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.8e-19 Score=124.25 Aligned_cols=77 Identities=25% Similarity=0.514 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccC
Q 023798 4 RASRTLYVGNLPG-DIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (277)
Q Consensus 4 ~~~~~l~v~nL~~-~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~ 82 (277)
.++++|||+|||+ .+++++|+++|++||+|..|.+. +|||||+|.+.++|+.|+..|||..|.|+.|.|.++..
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 5889999999998 99999999999999999999996 79999999999999999999999999999999999976
Q ss_pred CCC
Q 023798 83 GRG 85 (277)
Q Consensus 83 ~~~ 85 (277)
...
T Consensus 83 ~~~ 85 (96)
T 2kvi_A 83 NAR 85 (96)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 115
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.80 E-value=5.6e-19 Score=124.53 Aligned_cols=80 Identities=15% Similarity=0.369 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.+.++|||+|||+++++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++|+..+ +..|.|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 4789999999999999999999999999999999965 4788999999999999999999966 59999999999999
Q ss_pred cCCC
Q 023798 81 HGGR 84 (277)
Q Consensus 81 ~~~~ 84 (277)
....
T Consensus 102 ~~~~ 105 (109)
T 2rs2_A 102 FPRR 105 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7544
No 116
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=8.5e-19 Score=123.78 Aligned_cols=83 Identities=24% Similarity=0.333 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCc-eeEEEee-c---CCCCCceEEEEEcChHHHHHHHHhcC--CCccCCceE
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGP-IAHIDLK-I---PPRPPGYAFVEFEEARDAEDAIRGRD--GYDFDGHRL 75 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~-v~~v~~~-~---~~~~~g~afV~f~~~~~A~~a~~~l~--g~~~~g~~l 75 (277)
+.++++|||+|||+++++++|+++|..||. |..|.++ . ++.++|||||+|.+.++|+.|+..|| +..|.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 357899999999999999999999999998 9999986 3 35789999999999999999999996 589999999
Q ss_pred EEEEccCCCC
Q 023798 76 RVELAHGGRG 85 (277)
Q Consensus 76 ~v~~a~~~~~ 85 (277)
.|.|+.....
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999986554
No 117
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.6e-19 Score=120.52 Aligned_cols=75 Identities=31% Similarity=0.523 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhc-CCCccCCceEEEEEcc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR-DGYDFDGHRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l-~g~~~~g~~l~v~~a~ 81 (277)
.++++|||+|||+++++++|+++|++||+|..|.+.. ++|||||+|.+.++|++|+..| |+..|.|+.|.|.|++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~---~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ---RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC---CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 5779999999999999999999999999999999975 3799999999999999999998 9999999999999974
No 118
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.79 E-value=3e-19 Score=125.64 Aligned_cols=76 Identities=33% Similarity=0.586 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~ 83 (277)
.++++|||+|||+++++++|+++|+.||.|..|.+. +|||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 478999999999999999999999999999999998 799999999999999999999999999999999999754
Q ss_pred C
Q 023798 84 R 84 (277)
Q Consensus 84 ~ 84 (277)
.
T Consensus 104 ~ 104 (108)
T 2jvo_A 104 A 104 (108)
T ss_dssp C
T ss_pred C
Confidence 3
No 119
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2e-19 Score=126.10 Aligned_cols=82 Identities=16% Similarity=0.318 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEE
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 79 (277)
..+.++|||+|||+++++++|+++|..||+|..|.|+. ++.++|||||+|.+.++|++||.. |+..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 45789999999999999999999999999999999955 467789999999999999999997 99999999999999
Q ss_pred ccCCCC
Q 023798 80 AHGGRG 85 (277)
Q Consensus 80 a~~~~~ 85 (277)
+.....
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 976543
No 120
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.79 E-value=8.3e-19 Score=126.76 Aligned_cols=82 Identities=24% Similarity=0.426 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
.++++|||+|||+.+++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 4678999999999999999999999999999999954 56789999999999999999999999999999999999997
Q ss_pred CCCC
Q 023798 82 GGRG 85 (277)
Q Consensus 82 ~~~~ 85 (277)
....
T Consensus 113 ~~~~ 116 (124)
T 2kt5_A 113 SQID 116 (124)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 6543
No 121
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.5e-19 Score=122.81 Aligned_cols=79 Identities=27% Similarity=0.413 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCc-eeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCC-CccCCceEEEEEc
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGP-IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG-YDFDGHRLRVELA 80 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~-v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g-~~~~g~~l~v~~a 80 (277)
..++++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++|+..||| ..|.|+.|.|.++
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 467899999999999999999999999999 6666663 489999999999999999999999 9999999999999
Q ss_pred cCCCC
Q 023798 81 HGGRG 85 (277)
Q Consensus 81 ~~~~~ 85 (277)
.....
T Consensus 81 ~~~~~ 85 (93)
T 2cqh_A 81 VSKKL 85 (93)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 76543
No 122
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=3.2e-19 Score=123.19 Aligned_cols=77 Identities=27% Similarity=0.481 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~ 83 (277)
.+++|||+|||+++++++|+++|+.||.|. +.+. .+.++|||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLT-WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEE-EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEE-cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 479999999999999999999999999996 5554 3467899999999999999999999999999999999999754
No 123
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.79 E-value=2.1e-19 Score=118.03 Aligned_cols=72 Identities=21% Similarity=0.377 Sum_probs=67.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 8 ~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
+|||+|||+++++++|+++|++||+|..|.++. ++.++|||||+|.+.++|++|+. ||+..|.|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 589999999999999999999999999999954 56789999999999999999998 9999999999999875
No 124
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.79 E-value=2.9e-19 Score=133.91 Aligned_cols=77 Identities=16% Similarity=0.264 Sum_probs=71.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccC--ceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEE
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYG--PIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G--~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 79 (277)
..++|||+|||+++|+++|+++|+.|| .|..|.|+. ++.++|||||+|.+.++|++||..|||..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999953 578899999999999999999999999999999999999
Q ss_pred cc
Q 023798 80 AH 81 (277)
Q Consensus 80 a~ 81 (277)
+.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 125
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.6e-19 Score=126.41 Aligned_cols=80 Identities=33% Similarity=0.691 Sum_probs=73.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
++++|||+|||+.+++++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 568999999999999999999999999999999954 56778999999999999999999999999999999999997
Q ss_pred CCC
Q 023798 82 GGR 84 (277)
Q Consensus 82 ~~~ 84 (277)
...
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 543
No 126
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.79 E-value=3.1e-19 Score=130.66 Aligned_cols=82 Identities=35% Similarity=0.571 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.++++|||+|||+++|+++|+++|+.||+|..|.|+. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 3578999999999999999999999999999999954 5688999999999999999999999999999999999999
Q ss_pred cCCCC
Q 023798 81 HGGRG 85 (277)
Q Consensus 81 ~~~~~ 85 (277)
.....
T Consensus 125 ~~~~~ 129 (135)
T 2lea_A 125 RYGRP 129 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 86554
No 127
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.79 E-value=3.9e-19 Score=129.69 Aligned_cols=81 Identities=19% Similarity=0.347 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCceeE--EEeec---CCCCCceEEEEEcChHHHHHHHHhcCCC----ccCCc
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAH--IDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGY----DFDGH 73 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~--v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~----~~~g~ 73 (277)
..++++|||+|||+++|+++|+++|+.||.|.. |.|+. ++.++|||||+|.+. +|.+|+..|||. .|.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 457899999999999999999999999999966 88854 578899999999999 999999999999 99999
Q ss_pred eEEEEEccCCC
Q 023798 74 RLRVELAHGGR 84 (277)
Q Consensus 74 ~l~v~~a~~~~ 84 (277)
.|.|.++.+..
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999997654
No 128
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.79 E-value=6.1e-19 Score=132.70 Aligned_cols=82 Identities=34% Similarity=0.500 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.++++|||+|||+++|+++|+++|+.||+|..|.|+. ++.++|||||+|.+.++|++||..||+..|.|+.|.|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3689999999999999999999999999999999955 3667899999999999999999999999999999999999
Q ss_pred cCCCC
Q 023798 81 HGGRG 85 (277)
Q Consensus 81 ~~~~~ 85 (277)
.....
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 86443
No 129
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.4e-20 Score=123.56 Aligned_cols=78 Identities=21% Similarity=0.364 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEE
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 79 (277)
+.++++|||+|||+++++++|+++|+.||+|..|.++. ++.++|||||+|.+.++|+.|+..|||..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35889999999999999999999999999999999954 467899999999999999999999999999999988766
Q ss_pred c
Q 023798 80 A 80 (277)
Q Consensus 80 a 80 (277)
+
T Consensus 82 ~ 82 (85)
T 1x4e_A 82 P 82 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 130
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.78 E-value=2.7e-19 Score=124.21 Aligned_cols=77 Identities=27% Similarity=0.540 Sum_probs=69.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec----CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEE
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI----PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 79 (277)
.+.++|||+|||+++++++|+++|+.|| |..|.|.. ++.++|||||+|.+.++|++|+ .|||..|.|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4679999999999999999999999999 99999953 5678999999999999999999 7999999999999999
Q ss_pred ccC
Q 023798 80 AHG 82 (277)
Q Consensus 80 a~~ 82 (277)
+..
T Consensus 95 a~~ 97 (100)
T 2j76_E 95 ADQ 97 (100)
T ss_dssp CCC
T ss_pred ccC
Confidence 864
No 131
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.78 E-value=1.1e-18 Score=131.71 Aligned_cols=81 Identities=36% Similarity=0.576 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
+.++|||+|||+++++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.++.
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 578999999999999999999999999999999954 57889999999999999999999999999999999999998
Q ss_pred CCCC
Q 023798 82 GGRG 85 (277)
Q Consensus 82 ~~~~ 85 (277)
....
T Consensus 149 ~~~~ 152 (158)
T 2kn4_A 149 YGRP 152 (158)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6543
No 132
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=3.5e-19 Score=124.01 Aligned_cols=75 Identities=24% Similarity=0.441 Sum_probs=70.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccC
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~ 82 (277)
.+++|||+|||.++++++|+++|+.||.|..|.+. .++|||||+|.+.++|..|+..|||..|.|+.|.|.|+..
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY---PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 47899999999999999999999999999999997 4689999999999999999999999999999999999863
No 133
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.1e-19 Score=125.53 Aligned_cols=77 Identities=30% Similarity=0.484 Sum_probs=71.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
+.++|||+|||+++++++|+++|+.||.|..|.|+. ++.++|||||+|.+.++|++|| .|||..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 357999999999999999999999999999999964 3678999999999999999999 899999999999999986
Q ss_pred C
Q 023798 82 G 82 (277)
Q Consensus 82 ~ 82 (277)
.
T Consensus 103 ~ 103 (114)
T 2cq4_A 103 A 103 (114)
T ss_dssp H
T ss_pred C
Confidence 4
No 134
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.78 E-value=7.7e-19 Score=124.18 Aligned_cols=75 Identities=31% Similarity=0.651 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023798 5 ASRTLYVGNLPGD-IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (277)
Q Consensus 5 ~~~~l~v~nL~~~-~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~ 83 (277)
++++|||+|||+. +++++|+++|++||+|..|.+. +|||||+|.+.++|++|+..||+..|.|+.|.|.++...
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH-----KGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE-----TTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4589999999999 9999999999999999999993 899999999999999999999999999999999999754
Q ss_pred C
Q 023798 84 R 84 (277)
Q Consensus 84 ~ 84 (277)
.
T Consensus 101 ~ 101 (110)
T 1wf1_A 101 K 101 (110)
T ss_dssp C
T ss_pred C
Confidence 4
No 135
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-19 Score=124.90 Aligned_cols=79 Identities=24% Similarity=0.352 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEee---cCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~---~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
...++|||+|||+++++++|+++|..||.|..+.++ .++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 356899999999999999999999999999766553 35678999999999999999999999999999999999998
Q ss_pred cC
Q 023798 81 HG 82 (277)
Q Consensus 81 ~~ 82 (277)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 136
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3e-19 Score=117.90 Aligned_cols=73 Identities=15% Similarity=0.393 Sum_probs=68.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
++|||+|||+++++++|+++|++||+|..|.++. ++.++|||||+|.+.++|++|+..++ ..|.|+.|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5899999999999999999999999999999954 46789999999999999999999998 9999999999987
No 137
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.78 E-value=2.2e-19 Score=123.78 Aligned_cols=78 Identities=28% Similarity=0.450 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~ 83 (277)
.++++|||+|||+.+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 467899999999999999999999999999877 567788999999999999999999999999999999999999654
No 138
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=6.4e-19 Score=122.88 Aligned_cols=82 Identities=22% Similarity=0.365 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~ 83 (277)
.++++|||+|||+++++++|+++|+.|+.|..+....++.++|||||+|.+.++|++||..||+..|.|+.|.|.++...
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 57899999999999999999999998876554444456788999999999999999999999999999999999999764
Q ss_pred CC
Q 023798 84 RG 85 (277)
Q Consensus 84 ~~ 85 (277)
..
T Consensus 93 ~~ 94 (102)
T 2fc8_A 93 GE 94 (102)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 139
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.78 E-value=1.3e-19 Score=124.68 Aligned_cols=77 Identities=22% Similarity=0.311 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEee---cCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLK---IPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~---~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
++++|||+|||+++++++|+++|+.||.|..+.++ .++.++|||||+|.+.++|++|+..||+..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 56899999999999999999999999999876663 356778999999999999999999999999999999999875
No 140
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-18 Score=120.78 Aligned_cols=81 Identities=20% Similarity=0.381 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEE
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 79 (277)
..++++|||+|||+++++++|+++|..||+|..|.|+. ++.++|||||+|.+.++|++|+. ++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 35789999999999999999999999999999999954 47788999999999999999999 47789999999999
Q ss_pred ccCCCC
Q 023798 80 AHGGRG 85 (277)
Q Consensus 80 a~~~~~ 85 (277)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 976543
No 141
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.9e-18 Score=120.81 Aligned_cols=79 Identities=18% Similarity=0.257 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeE-EEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAH-IDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~-v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.+.++|||+|||+++|+++|+++|..||.|.. |.|.. ++.++|||||+|.++++|++||.. |+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 46799999999999999999999999999987 77744 578899999999999999999996 999999999999998
Q ss_pred cCC
Q 023798 81 HGG 83 (277)
Q Consensus 81 ~~~ 83 (277)
...
T Consensus 92 ~~~ 94 (104)
T 1wg5_A 92 SRA 94 (104)
T ss_dssp CTT
T ss_pred CHH
Confidence 643
No 142
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.78 E-value=3.3e-19 Score=132.18 Aligned_cols=81 Identities=26% Similarity=0.479 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeE--------EEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceE
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAH--------IDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRL 75 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~--------v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l 75 (277)
.++++|||+|||+.+|+++|+++|+.||.|.. +.+..++.++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 57899999999999999999999999998875 5556678899999999999999999999999999999999
Q ss_pred EEEEccCCC
Q 023798 76 RVELAHGGR 84 (277)
Q Consensus 76 ~v~~a~~~~ 84 (277)
.|.++....
T Consensus 123 ~V~~a~~~~ 131 (143)
T 3egn_A 123 VVQFARSAR 131 (143)
T ss_dssp EEEECCCSC
T ss_pred EEEECCCCC
Confidence 999997544
No 143
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=128.74 Aligned_cols=77 Identities=35% Similarity=0.640 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.++++|||+|||+.+++++|+++|+.||+|..|.++. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.+|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 4789999999999999999999999999999999954 4778999999999999999999999999999999999885
No 144
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-18 Score=123.41 Aligned_cols=80 Identities=19% Similarity=0.382 Sum_probs=73.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
+.++|||+|||+++++++|+++|..||.|..|.|+. ++.++|||||+|.+.++|++||.. |+..|.|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 458999999999999999999999999999999965 367899999999999999999996 9999999999999997
Q ss_pred CCCC
Q 023798 82 GGRG 85 (277)
Q Consensus 82 ~~~~ 85 (277)
....
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 6543
No 145
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=118.49 Aligned_cols=78 Identities=18% Similarity=0.325 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
.+.++|||+|||+++++++|+++|+.| .|..|.|+. ++.++|||||+|.+.++|++|+. |||..|.|+.|.|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 467999999999999999999999999 999999965 46778999999999999999999 99999999999999997
Q ss_pred CC
Q 023798 82 GG 83 (277)
Q Consensus 82 ~~ 83 (277)
..
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 54
No 146
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.77 E-value=1.9e-19 Score=122.62 Aligned_cols=77 Identities=34% Similarity=0.622 Sum_probs=69.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023798 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~ 83 (277)
++|||+|||+++++++|+++|+.||+|..|.+.. ++.++|||||+|.+.+ |.+|+..|||..|.|+.|.|.+|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 5899999999999999999999999999999964 4778999999999999 99999999999999999999999754
Q ss_pred C
Q 023798 84 R 84 (277)
Q Consensus 84 ~ 84 (277)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 147
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.77 E-value=6.7e-19 Score=133.63 Aligned_cols=82 Identities=26% Similarity=0.454 Sum_probs=74.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.++++|||+|||+.+++++|+++|..||+|..|.|+. ++.++|||||+|.+.++|++||..|||..|.|+.|.|.|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4567899999999999999999999999999999964 5677899999999999999999999999999999999999
Q ss_pred cCCCC
Q 023798 81 HGGRG 85 (277)
Q Consensus 81 ~~~~~ 85 (277)
.....
T Consensus 150 ~~~~~ 154 (165)
T 1rk8_A 150 FVKGP 154 (165)
T ss_dssp EECC-
T ss_pred cCCCC
Confidence 75443
No 148
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.77 E-value=5.7e-19 Score=125.72 Aligned_cols=78 Identities=56% Similarity=1.015 Sum_probs=65.8
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccceee-eEEEee
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR-AYVRVR 183 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~-~~i~~~ 183 (277)
....++|||+|||+.+++++|+++|.+||+|..+.++.+ +||||+|.+.++|++|++.||+..++|+.+. ..+.+.
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 346789999999999999999999999999999999877 7999999999999999999999999996632 234554
Q ss_pred cc
Q 023798 184 EY 185 (277)
Q Consensus 184 ~~ 185 (277)
..
T Consensus 90 ~~ 91 (115)
T 3beg_B 90 VD 91 (115)
T ss_dssp EC
T ss_pred cC
Confidence 43
No 149
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.77 E-value=1.6e-18 Score=125.27 Aligned_cols=79 Identities=28% Similarity=0.501 Sum_probs=72.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
+.++|||+|||+++|+++|+++|+.||+|..|.+.. ++.++|||||+|.+.++|++|+ .|||..|.|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 358999999999999999999999999999999953 6788999999999999999999 699999999999999997
Q ss_pred CCC
Q 023798 82 GGR 84 (277)
Q Consensus 82 ~~~ 84 (277)
...
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 150
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.77 E-value=6.9e-19 Score=119.21 Aligned_cols=77 Identities=32% Similarity=0.429 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccC
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~ 82 (277)
++.+++|||+|||+++++++|+++|++| +|..+.+. .++|||||+|.+.++|++|+..|||..|.|+.|.|.++..
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 2 SSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 3578999999999999999999999999 99999985 6689999999999999999999999999999999999864
Q ss_pred C
Q 023798 83 G 83 (277)
Q Consensus 83 ~ 83 (277)
.
T Consensus 78 ~ 78 (88)
T 1wg1_A 78 D 78 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 151
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.77 E-value=1.5e-18 Score=129.70 Aligned_cols=78 Identities=45% Similarity=0.745 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~ 83 (277)
.+.++|||+|||+++|+++|+++|+.||.|..|.++.+ ++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+.
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 46799999999999999999999999999999999765 6899999999999999999999999999999999998753
No 152
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.1e-18 Score=113.99 Aligned_cols=75 Identities=27% Similarity=0.349 Sum_probs=67.0
Q ss_pred CCCCe-EEEcCCCCCCCHHH----HHHHHhcc-CceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEE
Q 023798 4 RASRT-LYVGNLPGDIRERE----VEDLFYKY-GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (277)
Q Consensus 4 ~~~~~-l~v~nL~~~~t~~~----L~~~F~~~-G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 77 (277)
.|+.| |||+|||..+++++ |.++|++| |+|.+| ++ |+|||+|.+.++|+.|++.|||..|.|++|.|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 46777 99999999999998 55899999 599988 22 99999999999999999999999999999999
Q ss_pred EEccCCCC
Q 023798 78 ELAHGGRG 85 (277)
Q Consensus 78 ~~a~~~~~ 85 (277)
.+|+....
T Consensus 79 ~~A~~~sd 86 (96)
T 2diu_A 79 SFTPKNRE 86 (96)
T ss_dssp ESSCCSCC
T ss_pred EecCCCcc
Confidence 99976543
No 153
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.77 E-value=1.5e-18 Score=123.52 Aligned_cols=76 Identities=25% Similarity=0.360 Sum_probs=66.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCce-----EEEE
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR-----LRVE 78 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~-----l~v~ 78 (277)
+..++|||+|||+++++++|+++|.+||+|..|.|+.+ |||||+|.+.++|++||..|||..|.|+. |.|.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 45689999999999999999999999999999999754 89999999999999999999999999998 7777
Q ss_pred EccCC
Q 023798 79 LAHGG 83 (277)
Q Consensus 79 ~a~~~ 83 (277)
.+...
T Consensus 90 ~~~~~ 94 (115)
T 3beg_B 90 VDGPR 94 (115)
T ss_dssp ECC--
T ss_pred cCCCC
Confidence 76543
No 154
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9.6e-19 Score=124.43 Aligned_cols=78 Identities=18% Similarity=0.190 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCce-eEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPI-AHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v-~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.+.++|||+|||+++|+++|+++|+.||.| ..|.|+. ++.++|||||+|.+.++|++||.. |+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 477999999999999999999999999999 7788854 577899999999999999999996 999999999999998
Q ss_pred cC
Q 023798 81 HG 82 (277)
Q Consensus 81 ~~ 82 (277)
..
T Consensus 92 ~~ 93 (114)
T 2cpy_A 92 TL 93 (114)
T ss_dssp CH
T ss_pred CH
Confidence 64
No 155
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.8e-18 Score=116.84 Aligned_cols=77 Identities=26% Similarity=0.450 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~ 83 (277)
.++++|||+|| ++|+++|+++|+.||+|..|.|. .++|||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 47799999996 99999999999999999999995 56899999999999999999999999999999999999765
Q ss_pred CC
Q 023798 84 RG 85 (277)
Q Consensus 84 ~~ 85 (277)
..
T Consensus 88 ~~ 89 (97)
T 1x5p_A 88 PM 89 (97)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 156
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=123.15 Aligned_cols=79 Identities=20% Similarity=0.360 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCcc--------CCc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDF--------DGH 73 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~--------~g~ 73 (277)
.+.++|||+|||+++++++|+++|..||.|..|.|+. ++.++|||||+|.+.++|++|+..|||..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 4679999999999999999999999999999999955 467789999999999999999999999999 578
Q ss_pred eEEEEEccC
Q 023798 74 RLRVELAHG 82 (277)
Q Consensus 74 ~l~v~~a~~ 82 (277)
+|.|.|+.+
T Consensus 103 ~l~v~~a~p 111 (114)
T 1x5o_A 103 PLLCKFSGP 111 (114)
T ss_dssp CBEEEECCC
T ss_pred ceeEEccCC
Confidence 899999864
No 157
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.9e-18 Score=116.98 Aligned_cols=78 Identities=22% Similarity=0.490 Sum_probs=67.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~ 83 (277)
...++|||+|||+++++++|+++|+.||.|..|.+.. ...+ ||||+|.+.++|++|+. |||..|.|+.|.|.++...
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~-~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDK-DKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECS-SSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcC-CCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 4678999999999999999999999999999983322 1222 99999999999999999 9999999999999988654
Q ss_pred C
Q 023798 84 R 84 (277)
Q Consensus 84 ~ 84 (277)
.
T Consensus 83 ~ 83 (94)
T 2e5g_A 83 E 83 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 158
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=3.1e-19 Score=124.23 Aligned_cols=80 Identities=20% Similarity=0.328 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEe--ecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDL--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~--~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
.++++|||+|||+++|+++|+++|..||.|..+.+ ..++.++|||||+|.+.++|++|+. |||..|.|+.|.|.++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 46789999999999999999999999999877222 2357889999999999999999999 99999999999999997
Q ss_pred CCC
Q 023798 82 GGR 84 (277)
Q Consensus 82 ~~~ 84 (277)
...
T Consensus 94 ~~~ 96 (101)
T 1fj7_A 94 GRD 96 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 159
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.76 E-value=9e-19 Score=114.97 Aligned_cols=72 Identities=19% Similarity=0.496 Sum_probs=66.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 8 ~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
+|||+|||+++++++|+++|+.||+|..|.++. ++.++|||||+|.+.++|++|+. +++..|.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 699999999999999999999999999999954 46789999999999999999999 5999999999999875
No 160
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.6e-18 Score=120.54 Aligned_cols=79 Identities=22% Similarity=0.337 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
.+.++|||+|||+++|+++|+++|+.||.| .|.|+. ++.++|||||+|.+.++|++||. +|+..|.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 467899999999999999999999999955 888854 57789999999999999999996 89999999999999987
Q ss_pred CCC
Q 023798 82 GGR 84 (277)
Q Consensus 82 ~~~ 84 (277)
...
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 161
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.5e-18 Score=117.72 Aligned_cols=78 Identities=17% Similarity=0.368 Sum_probs=70.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEE-eecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHID-LKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~-~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~ 83 (277)
.+++|||+|||+++++++|+++|..||.|..|. ++.+. ..+.|||+|.+.++|+.|+..|||..|.|+.|.|.++.+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~-~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS-ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS-SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 578999999999999999999999999999994 65433 2445999999999999999999999999999999999754
No 162
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.76 E-value=1.9e-18 Score=125.98 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCc---eeEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEE
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGP---IAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~---v~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 78 (277)
.+.++|||+|||+++|+++|+++|+.||. |..|.|+. .+.++|||||+|.+.++|++||. ||+..|.|+.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 45789999999999999999999999999 78888854 46789999999999999999999 99999999999999
Q ss_pred Ecc
Q 023798 79 LAH 81 (277)
Q Consensus 79 ~a~ 81 (277)
++.
T Consensus 121 ~a~ 123 (136)
T 2hgl_A 121 KSH 123 (136)
T ss_dssp ECC
T ss_pred ECC
Confidence 874
No 163
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.76 E-value=1e-18 Score=125.01 Aligned_cols=77 Identities=21% Similarity=0.295 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCc---eeEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEE
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGP---IAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~---v~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 78 (277)
.+.++|||+|||+++|+++|+++|+.||. |..|.|.. ++.++|||||+|.+.++|++||. ||+..|.|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 46789999999999999999999999999 88888854 46789999999999999999999 99999999999999
Q ss_pred Ecc
Q 023798 79 LAH 81 (277)
Q Consensus 79 ~a~ 81 (277)
++.
T Consensus 94 ~a~ 96 (118)
T 2db1_A 94 KSH 96 (118)
T ss_dssp EEC
T ss_pred ECC
Confidence 985
No 164
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.76 E-value=3.2e-18 Score=130.97 Aligned_cols=80 Identities=25% Similarity=0.446 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
.++++|||+|||+.+++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.|+.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 3578999999999999999999999999999999955 47789999999999999999999999999999999999996
Q ss_pred CC
Q 023798 82 GG 83 (277)
Q Consensus 82 ~~ 83 (277)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 43
No 165
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.75 E-value=2.1e-18 Score=137.53 Aligned_cols=77 Identities=17% Similarity=0.241 Sum_probs=71.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccC--ceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEE
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYG--PIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G--~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 79 (277)
..++|||+||++++|+++|+++|..|| .|..|.|+. ++.++|||||+|.+.++|++||..||+..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999954 577899999999999999999999999999999999999
Q ss_pred cc
Q 023798 80 AH 81 (277)
Q Consensus 80 a~ 81 (277)
+.
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 85
No 166
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.2e-18 Score=124.50 Aligned_cols=77 Identities=22% Similarity=0.303 Sum_probs=69.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEE-e--ecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHID-L--KIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~-~--~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.+.++|||+|||+++|+++|+++|..||.|..+. + ..++.++|||||+|.+.++|++||. ||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 3568999999999999999999999999987633 3 3467889999999999999999999 9999999999999998
Q ss_pred c
Q 023798 81 H 81 (277)
Q Consensus 81 ~ 81 (277)
.
T Consensus 102 ~ 102 (124)
T 1wel_A 102 T 102 (124)
T ss_dssp C
T ss_pred C
Confidence 5
No 167
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.75 E-value=6.7e-18 Score=125.58 Aligned_cols=77 Identities=18% Similarity=0.224 Sum_probs=69.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCC--ceEEEEEccCCC
Q 023798 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVELAHGGR 84 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g--~~l~v~~a~~~~ 84 (277)
.+|||+||++.+|+++|+++|++||+|..|.|.. ..++|||||+|.+.++|++|+..|||..|.| +.|.|+|++...
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~-k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEE-SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEe-CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 4578999999999999999999999999999853 3357899999999999999999999999965 999999998654
No 168
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4.2e-17 Score=114.76 Aligned_cols=82 Identities=55% Similarity=0.960 Sum_probs=70.0
Q ss_pred CCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccce-eeeEEE
Q 023798 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF-SRAYVR 181 (277)
Q Consensus 103 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~-~~~~i~ 181 (277)
+.....++|||+|||+.+++++|+++|.+||.|..+.++.+ +||||+|.+.++|++|++.||+..+.|+. ....|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 44456789999999999999999999999999999999887 79999999999999999999999999832 224555
Q ss_pred eecccc
Q 023798 182 VREYDH 187 (277)
Q Consensus 182 ~~~~~~ 187 (277)
+....+
T Consensus 87 V~~a~~ 92 (108)
T 1x4c_A 87 VKVDGP 92 (108)
T ss_dssp EEESSC
T ss_pred EEeCCC
Confidence 655443
No 169
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.74 E-value=6.4e-18 Score=121.16 Aligned_cols=75 Identities=19% Similarity=0.299 Sum_probs=67.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCce-EEEEEcChHHHHHHHHhcCCCccCC--ceEEEEEccCCC
Q 023798 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGY-AFVEFEEARDAEDAIRGRDGYDFDG--HRLRVELAHGGR 84 (277)
Q Consensus 8 ~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~-afV~f~~~~~A~~a~~~l~g~~~~g--~~l~v~~a~~~~ 84 (277)
.|||+||++.+|+++|.++|++||+|..|.+.. ..+|| |||+|.+.++|+.|+..|||..|.| +.|.|+|++...
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~--~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT--KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEE--ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEc--CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 455999999999999999999999999998854 23677 9999999999999999999999988 899999998654
No 170
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.74 E-value=2.2e-18 Score=121.08 Aligned_cols=77 Identities=16% Similarity=0.190 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCc---eeEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEE
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGP---IAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~---v~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 78 (277)
...++|||+|||+++|+++|+++|+.||. |..|.|.. .+.++|||||+|.+.++|++||. ||+..|+|+.|.|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 57789999999999999999999999998 89999854 36789999999999999999999 99999999999999
Q ss_pred Ecc
Q 023798 79 LAH 81 (277)
Q Consensus 79 ~a~ 81 (277)
++.
T Consensus 88 ~a~ 90 (107)
T 2lmi_A 88 EIN 90 (107)
T ss_dssp ECC
T ss_pred ECC
Confidence 985
No 171
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=8.7e-18 Score=117.83 Aligned_cols=74 Identities=22% Similarity=0.272 Sum_probs=68.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 6 ~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
.++|||+|||+++|+++|+++|+.| .|..|.|+. ++.++|||||+|.+.++|++||. ||+..|+|+.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHH-TTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECC
Confidence 4689999999999999999999999 899999954 47789999999999999999995 99999999999998875
No 172
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.74 E-value=9.8e-18 Score=113.56 Aligned_cols=74 Identities=23% Similarity=0.467 Sum_probs=62.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCc--cCCceEEEEEcc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYD--FDGHRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~--~~g~~l~v~~a~ 81 (277)
.+.++|||+|||+++|+++|+++|++||+|..|.|+.+ ++|||||+|.+.++|++ |++.. +.|+.|.|.++.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 57899999999999999999999999999999999763 78999999999999984 44544 459999999986
Q ss_pred CC
Q 023798 82 GG 83 (277)
Q Consensus 82 ~~ 83 (277)
+.
T Consensus 83 ~k 84 (89)
T 3d2w_A 83 PK 84 (89)
T ss_dssp --
T ss_pred CC
Confidence 53
No 173
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=1.4e-17 Score=118.90 Aligned_cols=77 Identities=25% Similarity=0.251 Sum_probs=68.2
Q ss_pred CCCe--EEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCce-EEEEEcChHHHHHHHHhcCCCccCC--ceEEEEE
Q 023798 5 ASRT--LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGY-AFVEFEEARDAEDAIRGRDGYDFDG--HRLRVEL 79 (277)
Q Consensus 5 ~~~~--l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~-afV~f~~~~~A~~a~~~l~g~~~~g--~~l~v~~ 79 (277)
|+++ |||+||++.+|+++|+++|++||.|..|.|... .|| |||+|.+.++|..|+..|||..|.| +.|.|.+
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 4555 468999999999999999999999999999542 386 9999999999999999999999987 6999999
Q ss_pred ccCCC
Q 023798 80 AHGGR 84 (277)
Q Consensus 80 a~~~~ 84 (277)
++...
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 97654
No 174
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.74 E-value=6.4e-18 Score=114.19 Aligned_cols=73 Identities=32% Similarity=0.622 Sum_probs=67.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcc----C-------ceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccC
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKY----G-------PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~----G-------~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~ 71 (277)
++++++|||+|||+++++++|+++|+.| | +|..+.+..+ +|||||+|.+.++|++|+ .|||..|.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 4578999999999999999999999999 8 8999998643 899999999999999999 89999999
Q ss_pred CceEEEEE
Q 023798 72 GHRLRVEL 79 (277)
Q Consensus 72 g~~l~v~~ 79 (277)
|+.|.|+.
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999874
No 175
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.4e-18 Score=114.14 Aligned_cols=79 Identities=24% Similarity=0.436 Sum_probs=67.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccC
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~ 82 (277)
..++++|||+|||+++++++|+++|+.||+|..|.++.+ ++|||||+|.+.++|++|+.. ...+.|+.|.|.++..
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEP 77 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCC
Confidence 357899999999999999999999999999999999754 689999999999999865331 3455899999999875
Q ss_pred CCC
Q 023798 83 GRG 85 (277)
Q Consensus 83 ~~~ 85 (277)
...
T Consensus 78 ~~~ 80 (88)
T 1wf0_A 78 KHN 80 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 176
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.73 E-value=1.7e-17 Score=115.64 Aligned_cols=80 Identities=20% Similarity=0.275 Sum_probs=71.6
Q ss_pred CCCCCCeEEEcCCCC-----CCCHHHHHHHHhccCceeEEEeecC----CCCCceEEEEEcChHHHHHHHHhcCCCccCC
Q 023798 2 SSRASRTLYVGNLPG-----DIREREVEDLFYKYGPIAHIDLKIP----PRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (277)
Q Consensus 2 ~~~~~~~l~v~nL~~-----~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 72 (277)
+..++++|+|.||.. +-++++|+++|++||.|..|.|+.+ +.++|||||+|.+.++|.+|+..|||..|.|
T Consensus 4 ~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 4 GKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp GGSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 457999999999963 2478999999999999999999653 4779999999999999999999999999999
Q ss_pred ceEEEEEcc
Q 023798 73 HRLRVELAH 81 (277)
Q Consensus 73 ~~l~v~~a~ 81 (277)
+.|.|.++.
T Consensus 84 r~i~v~~a~ 92 (105)
T 2pe8_A 84 RVVKACFYN 92 (105)
T ss_dssp EECEEEECC
T ss_pred cEEEEEEcC
Confidence 999999985
No 177
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.73 E-value=3.3e-18 Score=125.08 Aligned_cols=79 Identities=19% Similarity=0.281 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
.+.++|||+|||+++|+++|+++|++|| |..|.|+. ++.++|||||+|.+.++|++|| .+|+..|.|+.|.|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 3568999999999999999999999999 67898854 4678999999999999999999 699999999999999987
Q ss_pred CCC
Q 023798 82 GGR 84 (277)
Q Consensus 82 ~~~ 84 (277)
...
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 543
No 178
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.5e-18 Score=123.18 Aligned_cols=77 Identities=23% Similarity=0.236 Sum_probs=69.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCce----eEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEE
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPI----AHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v----~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 77 (277)
.+.++|||+|||+++|+++|+++|+.||+| ..|.|+. ++.++|||||+|.+.++|++||.. |+..|.|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 467899999999999999999999999975 5777753 677899999999999999999995 999999999999
Q ss_pred EEcc
Q 023798 78 ELAH 81 (277)
Q Consensus 78 ~~a~ 81 (277)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8873
No 179
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=3.4e-19 Score=127.29 Aligned_cols=82 Identities=28% Similarity=0.430 Sum_probs=74.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCceeE--------EEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccC
Q 023798 3 SRASRTLYVGNLPGDIREREVEDLFYKYGPIAH--------IDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~--------v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~ 71 (277)
..++++|||+|||+.+++++|+++|+.||.|.. |.|+. ++.++|||||+|.+.++|++|+..|||..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 357899999999999999999999999999998 77754 4678999999999999999999999999999
Q ss_pred CceEEEEEccCCC
Q 023798 72 GHRLRVELAHGGR 84 (277)
Q Consensus 72 g~~l~v~~a~~~~ 84 (277)
|+.|.|.++....
T Consensus 84 g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 84 GNPIKVSFATRRA 96 (116)
Confidence 9999999997644
No 180
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.72 E-value=1.3e-17 Score=119.66 Aligned_cols=76 Identities=21% Similarity=0.258 Sum_probs=68.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCcee--EEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEE
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIA--HIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~--~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 79 (277)
.+.++|||+|||+++|+++|+++|+.| .|. .|.|+. ++.++|||||+|.++++|++||. +++..|.|+.|.|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 357899999999999999999999999 566 888854 47789999999999999999999 578999999999988
Q ss_pred cc
Q 023798 80 AH 81 (277)
Q Consensus 80 a~ 81 (277)
+.
T Consensus 118 a~ 119 (126)
T 2hgm_A 118 SS 119 (126)
T ss_dssp EC
T ss_pred CC
Confidence 74
No 181
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.72 E-value=2.2e-17 Score=118.36 Aligned_cols=76 Identities=26% Similarity=0.471 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~ 83 (277)
.++++|||+|| ++|+++|+++|+.||+|..|.+. .++|||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 46799999996 69999999999999999999996 56899999999999999999999999999999999999754
Q ss_pred C
Q 023798 84 R 84 (277)
Q Consensus 84 ~ 84 (277)
.
T Consensus 112 ~ 112 (121)
T 2bz2_A 112 P 112 (121)
T ss_dssp C
T ss_pred C
Confidence 3
No 182
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.71 E-value=7.1e-18 Score=117.52 Aligned_cols=77 Identities=23% Similarity=0.515 Sum_probs=70.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccC
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~ 82 (277)
++++|||+|||+++++++|+++|+.||.|..|.++. ++.++|||||+|.+.++|++|+. ++..|.|+.|.|.++..
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 568999999999999999999999999999999955 56678999999999999999999 99999999999999864
Q ss_pred C
Q 023798 83 G 83 (277)
Q Consensus 83 ~ 83 (277)
.
T Consensus 86 ~ 86 (102)
T 2xs2_A 86 K 86 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 183
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.71 E-value=7.6e-17 Score=122.25 Aligned_cols=129 Identities=13% Similarity=0.119 Sum_probs=66.7
Q ss_pred EEEcChHHHHHHHHhcCCCccC--CceEEEEEccCCCCCCCCCCC-CCCCCCCCCCCCCCccceEEccCCCCCCCHHHHH
Q 023798 50 VEFEEARDAEDAIRGRDGYDFD--GHRLRVELAHGGRGRSSSDRH-SSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLK 126 (277)
Q Consensus 50 V~f~~~~~A~~a~~~l~g~~~~--g~~l~v~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~ 126 (277)
.+|.+.++|..|+..|++.... |+.+.+.++.......-.... .......+.+....+.++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7899999999999999987765 666666554322111000000 0000011122334567899999999999999999
Q ss_pred HHHhhcCceeEEEEEecCCC----CEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 127 DHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 127 ~~f~~~g~i~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
++|.+||.|..|.++.+..+ +||||+|.+.++|+.|+..|||..+.|+.+.+
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 146 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 146 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 99999999999999988543 59999999999999999999999999954433
No 184
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=9.4e-17 Score=114.07 Aligned_cols=74 Identities=32% Similarity=0.542 Sum_probs=62.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecC------CCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEE
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIP------PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~------~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 77 (277)
.++++|||+|||+++|+++|+++|++||+|. +.++.+ +.++|||||+|.+.++|++|+..|++ ++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEe
Confidence 5789999999999999999999999999999 776432 57899999999999999999998832 55665555
Q ss_pred EEc
Q 023798 78 ELA 80 (277)
Q Consensus 78 ~~a 80 (277)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 543
No 185
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.70 E-value=3.1e-17 Score=115.45 Aligned_cols=76 Identities=22% Similarity=0.345 Sum_probs=67.2
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcC----hHH----HHHHHH--hcCCCc
Q 023798 7 RTLYVGNL----PGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEE----ARD----AEDAIR--GRDGYD 69 (277)
Q Consensus 7 ~~l~v~nL----~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~----~~~----A~~a~~--~l~g~~ 69 (277)
++|||+|| |+.+++++|+++|+.||+|..|.++. ++.++|||||+|.+ +++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 79999999 99999999999999999999999954 57889999999996 433 788888 799999
Q ss_pred cCCceEEEEEccC
Q 023798 70 FDGHRLRVELAHG 82 (277)
Q Consensus 70 ~~g~~l~v~~a~~ 82 (277)
|+|+.|.|.+...
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998753
No 186
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.69 E-value=8.5e-17 Score=127.39 Aligned_cols=82 Identities=28% Similarity=0.527 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.+.++|||+|||..+++++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 3568999999999999999999999999999999954 4677899999999999999999999999999999999999
Q ss_pred cCCCC
Q 023798 81 HGGRG 85 (277)
Q Consensus 81 ~~~~~ 85 (277)
.....
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 76543
No 187
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.69 E-value=4.8e-17 Score=128.66 Aligned_cols=78 Identities=24% Similarity=0.406 Sum_probs=72.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec-CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccC
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~ 82 (277)
+.++|||+|||+.+|+++|+++|+.||.|..|.|+. .+.++|||||+|.+.++|++|+..|||..|+|+.|.|.++..
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 467899999999999999999999999999999954 345689999999999999999999999999999999999864
No 188
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=7.4e-17 Score=122.26 Aligned_cols=78 Identities=24% Similarity=0.475 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.++++|||+|||+.+++++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 4678999999999999999999999999999999953 4678899999999999999999999999999999999998
Q ss_pred c
Q 023798 81 H 81 (277)
Q Consensus 81 ~ 81 (277)
.
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 5
No 189
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.6e-16 Score=111.38 Aligned_cols=80 Identities=24% Similarity=0.389 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCC-----------HHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCC
Q 023798 4 RASRTLYVGNLPGDIR-----------EREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG 72 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t-----------~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 72 (277)
.++++|+|.||..... +++|+++|++||+|..|.| .+..++|||||+|.+.++|++|+..|||..|.|
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 5789999999954432 6899999999999999976 455689999999999999999999999999999
Q ss_pred ceEEEEEccCCC
Q 023798 73 HRLRVELAHGGR 84 (277)
Q Consensus 73 ~~l~v~~a~~~~ 84 (277)
+.|.|.++.+..
T Consensus 92 r~l~v~~a~~~~ 103 (112)
T 2dit_A 92 RQITAQAWDGTT 103 (112)
T ss_dssp EECEEEECCSCC
T ss_pred cEEEEEEeCCCC
Confidence 999999987543
No 190
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.68 E-value=6.2e-17 Score=118.39 Aligned_cols=113 Identities=14% Similarity=0.068 Sum_probs=67.6
Q ss_pred ceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHH
Q 023798 46 GYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDL 125 (277)
Q Consensus 46 g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l 125 (277)
.++|++|.+...|..|+..++|....|..- +.+ +..........+|||+|||..+++++|
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~-------------------~~~~~~~~~~~~l~V~nLp~~~te~~L 64 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSY-------------------GRPPPDVEGMTSLKVDNLTYRTSPDTL 64 (135)
T ss_dssp -------------------------------CCS-------------------CCSCSSGGGCCCEEEECCCSSCHHHHH
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCc-------------------CCCCCCCCCCCEEEEeCCCCCCCHHHH
Confidence 477888889999999999888876655431 001 111234456789999999999999999
Q ss_pred HHHHhhcCceeEEEEEecC----CCCEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 126 KDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 126 ~~~f~~~g~i~~~~~~~~~----~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
+++|++||.|..+.++.+. ..+||||+|.+.++|++|++.|++..+.|+.+.+
T Consensus 65 ~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 65 RRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp HHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred HHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 9999999999999998764 3469999999999999999999999999955433
No 191
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.68 E-value=3.4e-16 Score=108.09 Aligned_cols=70 Identities=21% Similarity=0.368 Sum_probs=64.1
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC----CEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
.+++|||+|||.++++++|+++|++||.|..+.++.++.. +||||+|.+.++|++|++.|||..+.|+.+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l 91 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTI 91 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 4579999999999999999999999999999999987643 499999999999999999999999999543
No 192
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.68 E-value=7e-17 Score=128.10 Aligned_cols=78 Identities=27% Similarity=0.419 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCC---------CHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCcc----
Q 023798 4 RASRTLYVGNLPGDI---------REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDF---- 70 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~---------t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~---- 70 (277)
.++++|||+||+..+ ++++|+++|++||+|..|.|+. ++|||||+|.+.++|+.|+..|||..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~---~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE---SKNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC---CCCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 468999999999998 7999999999999999999974 489999999999999999999999999
Q ss_pred --------CCceEEEEEccCCC
Q 023798 71 --------DGHRLRVELAHGGR 84 (277)
Q Consensus 71 --------~g~~l~v~~a~~~~ 84 (277)
.|+.|.|.||....
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp STTGGGGGGSCCCEEEECC---
T ss_pred cccccccCCCCEEEEEEccCCC
Confidence 89999999997543
No 193
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.67 E-value=1.1e-16 Score=122.13 Aligned_cols=76 Identities=28% Similarity=0.598 Sum_probs=71.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
+.++|||+|||+.+++++|+++|++||+|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.+|
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 468999999999999999999999999999999954 5677899999999999999999999999999999999997
No 194
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.67 E-value=1.8e-16 Score=123.81 Aligned_cols=81 Identities=27% Similarity=0.573 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a 80 (277)
.+.++|||+|||+.+++++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4679999999999999999999999999999999954 5677899999999999999999999999999999999999
Q ss_pred cCCC
Q 023798 81 HGGR 84 (277)
Q Consensus 81 ~~~~ 84 (277)
.+..
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 195
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.67 E-value=1.2e-16 Score=122.45 Aligned_cols=76 Identities=28% Similarity=0.446 Sum_probs=71.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccC
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHG 82 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~ 82 (277)
+.++|||+|||+.+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.+
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 56899999999999999999999999999887 66788999999999999999999999999999999999999864
No 196
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.67 E-value=1.9e-16 Score=111.17 Aligned_cols=75 Identities=31% Similarity=0.569 Sum_probs=67.2
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhhcC-ceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccceeeeEEEeecc
Q 023798 107 SEYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 185 (277)
..++|||+|||+.+++++|+++|.+|| .|..+.+......+||||+|.+.++|++|++.|||..++|+ .|.+...
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr----~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGS----VITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTE----EEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCe----EEEEEEC
Confidence 458999999999999999999999999 99999997666778999999999999999999999999994 4555544
No 197
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.67 E-value=1.1e-16 Score=121.57 Aligned_cols=77 Identities=22% Similarity=0.534 Sum_probs=71.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
++++|||+|||+.+++++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+. +||..|.|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 467999999999999999999999999999999954 57889999999999999999999 89999999999999986
Q ss_pred C
Q 023798 82 G 82 (277)
Q Consensus 82 ~ 82 (277)
+
T Consensus 165 p 165 (167)
T 2cjk_A 165 P 165 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 198
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.65 E-value=3.9e-16 Score=118.56 Aligned_cols=77 Identities=34% Similarity=0.578 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCC--ceEEEE
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG--HRLRVE 78 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g--~~l~v~ 78 (277)
.++++|||+|||..+++++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.| ++|.|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 4678999999999999999999999999999999954 46678999999999999999999999999988 999999
Q ss_pred Ec
Q 023798 79 LA 80 (277)
Q Consensus 79 ~a 80 (277)
||
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 199
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.65 E-value=1.9e-15 Score=107.59 Aligned_cols=72 Identities=17% Similarity=0.264 Sum_probs=65.0
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecC---CCCEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~---~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
...+|||+|||..+++++|+++|++||.|..+.+..+. ..+||||+|.+.++|++|++.|+|..+.|..+.+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V 80 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKV 80 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 45799999999999999999999999999999999875 3469999999999999999999999999955433
No 200
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.65 E-value=3.3e-16 Score=119.74 Aligned_cols=76 Identities=22% Similarity=0.359 Sum_probs=69.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCccC---CceEEEEE
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFD---GHRLRVEL 79 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~---g~~l~v~~ 79 (277)
+.++|||+|||+.+|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..+. |++|.|.|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 568999999999999999999999999999999954 4667899999999999999999999998876 49999999
Q ss_pred c
Q 023798 80 A 80 (277)
Q Consensus 80 a 80 (277)
|
T Consensus 174 a 174 (175)
T 3nmr_A 174 A 174 (175)
T ss_dssp C
T ss_pred c
Confidence 7
No 201
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.64 E-value=5.6e-16 Score=107.93 Aligned_cols=79 Identities=25% Similarity=0.436 Sum_probs=69.5
Q ss_pred CCCCCeEEEcCC--CCCCC--------HHHHHHHHhccCceeEEEeecC-----CCCCceEEEEEcChHHHHHHHHhcCC
Q 023798 3 SRASRTLYVGNL--PGDIR--------EREVEDLFYKYGPIAHIDLKIP-----PRPPGYAFVEFEEARDAEDAIRGRDG 67 (277)
Q Consensus 3 ~~~~~~l~v~nL--~~~~t--------~~~L~~~F~~~G~v~~v~~~~~-----~~~~g~afV~f~~~~~A~~a~~~l~g 67 (277)
+.|+++|.|.|+ |..+. +++|+++|++||+|..|.|+.+ +.++|+|||+|.++++|.+|+..|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 468999999999 43443 3689999999999999999654 25789999999999999999999999
Q ss_pred CccCCceEEEEEcc
Q 023798 68 YDFDGHRLRVELAH 81 (277)
Q Consensus 68 ~~~~g~~l~v~~a~ 81 (277)
..|+|+.|.|.++.
T Consensus 82 ~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 82 RKFANRVVVTKYCD 95 (105)
T ss_dssp CEETTEECEEEEEC
T ss_pred CEeCCCEEEEEEeC
Confidence 99999999999975
No 202
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.64 E-value=1e-15 Score=110.73 Aligned_cols=77 Identities=17% Similarity=0.272 Sum_probs=67.5
Q ss_pred CCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceeccceeeeE
Q 023798 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (277)
Q Consensus 104 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (277)
.....++|||+|||..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|++|++.||+..+.|..+.+.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 344568999999999999999999999999999999987743 4699999999999999999999999999655444
Q ss_pred E
Q 023798 180 V 180 (277)
Q Consensus 180 i 180 (277)
+
T Consensus 98 ~ 98 (126)
T 3ex7_B 98 W 98 (126)
T ss_dssp E
T ss_pred E
Confidence 3
No 203
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.1e-15 Score=103.81 Aligned_cols=82 Identities=16% Similarity=0.226 Sum_probs=70.1
Q ss_pred CCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC-CCEEEEEEcChhhHHHHHHHcCCceeccceeeeEEE
Q 023798 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (277)
Q Consensus 103 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~-~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 181 (277)
.......+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|++|++.||+..+.| ..|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 92 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG----YRLR 92 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECC----eEEE
Confidence 3445678999999999999999999999999999999977643 5799999999999999999999999999 4555
Q ss_pred eeccccC
Q 023798 182 VREYDHR 188 (277)
Q Consensus 182 ~~~~~~~ 188 (277)
+......
T Consensus 93 V~~a~~~ 99 (109)
T 1x4a_A 93 VEFPRSG 99 (109)
T ss_dssp EECCCCC
T ss_pred EEEcccC
Confidence 5555443
No 204
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.64 E-value=5e-16 Score=121.04 Aligned_cols=80 Identities=24% Similarity=0.485 Sum_probs=70.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
+.++|||+|||+++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+.. +|..|.|+.|.|.++.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 568999999999999999999999999999999964 467899999999999999999995 8999999999999997
Q ss_pred CCCC
Q 023798 82 GGRG 85 (277)
Q Consensus 82 ~~~~ 85 (277)
....
T Consensus 182 ~k~~ 185 (196)
T 1l3k_A 182 SKQE 185 (196)
T ss_dssp ----
T ss_pred ChhH
Confidence 6543
No 205
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.4e-15 Score=104.93 Aligned_cols=77 Identities=8% Similarity=0.107 Sum_probs=66.0
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCC--ceeccceeeeEEEe
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD--SEFRNAFSRAYVRV 182 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g--~~~~g~~~~~~i~~ 182 (277)
..+.++|||+|||+.+++++|+++|++||.|..+.++.+ ++||||+|.+.++|+.|++.|++ ..+.| ..+.+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G----r~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRG----QPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCEETT----EECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCceECC----EEEEE
Confidence 345689999999999999999999999999999999876 67999999999999999998864 68888 45555
Q ss_pred ecccc
Q 023798 183 REYDH 187 (277)
Q Consensus 183 ~~~~~ 187 (277)
.....
T Consensus 87 ~~A~~ 91 (105)
T 1sjq_A 87 QFSNH 91 (105)
T ss_dssp CCCSS
T ss_pred EEcCC
Confidence 54433
No 206
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.64 E-value=6e-16 Score=120.08 Aligned_cols=77 Identities=17% Similarity=0.353 Sum_probs=69.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCC
Q 023798 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGG 83 (277)
Q Consensus 6 ~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~ 83 (277)
.++|||+|||+++|+++|+++|+.||+|..|.|+. ++.++|||||+|.+.++|++|+..+ +..|.|+.|.|.++...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 47999999999999999999999999999999954 4677899999999999999999855 56999999999998653
No 207
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.63 E-value=7.5e-16 Score=116.81 Aligned_cols=76 Identities=32% Similarity=0.604 Sum_probs=69.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---CCCCCceEEEEEcChHHHHHHHHhcCCCccCCc--eEEEEE
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH--RLRVEL 79 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~--~l~v~~ 79 (277)
+.++|||+|||+.+++++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+ +|.|.|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 568999999999999999999999999999999954 466789999999999999999999999999996 488887
Q ss_pred c
Q 023798 80 A 80 (277)
Q Consensus 80 a 80 (277)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 208
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.1e-15 Score=105.06 Aligned_cols=74 Identities=16% Similarity=0.131 Sum_probs=66.4
Q ss_pred CCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 103 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
+...+..+|||+|||..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|++|++.||+..++|+.+
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 3445678999999999999999999999999999999988754 4699999999999999999999999999544
No 209
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8.9e-15 Score=101.87 Aligned_cols=81 Identities=19% Similarity=0.240 Sum_probs=69.7
Q ss_pred CCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC--CCEEEEEEcChhhHHHHHHHcCCceeccceeeeEE
Q 023798 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS--GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (277)
Q Consensus 103 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~--~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 180 (277)
.......+|||+|||..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|++|++.|++..++|+. |
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~----l 85 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRK----I 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEE----C
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE----E
Confidence 3445678999999999999999999999999999999998754 569999999999999999999999999944 4
Q ss_pred Eeecccc
Q 023798 181 RVREYDH 187 (277)
Q Consensus 181 ~~~~~~~ 187 (277)
.+.....
T Consensus 86 ~v~~a~~ 92 (103)
T 2cq3_A 86 EVNNATA 92 (103)
T ss_dssp EEEECCS
T ss_pred EEEEccc
Confidence 4444433
No 210
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1e-14 Score=101.56 Aligned_cols=81 Identities=10% Similarity=0.098 Sum_probs=69.9
Q ss_pred CCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC--CCEEEEEEcChhhHHHHHHHcCCceeccceeeeEEE
Q 023798 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS--GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (277)
Q Consensus 104 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~--~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 181 (277)
......+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|++|++.|++..+.| ..+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 86 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILG----KEVK 86 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETT----EEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCC----CeEE
Confidence 345678999999999999999999999999999999998754 4699999999999999999999999999 4555
Q ss_pred eeccccC
Q 023798 182 VREYDHR 188 (277)
Q Consensus 182 ~~~~~~~ 188 (277)
+......
T Consensus 87 V~~a~~~ 93 (103)
T 2cqi_A 87 VNWATTP 93 (103)
T ss_dssp EEECCCT
T ss_pred EEECCCC
Confidence 5554443
No 211
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.63 E-value=1.2e-15 Score=125.86 Aligned_cols=75 Identities=23% Similarity=0.414 Sum_probs=70.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccC-CceEEEEEcc
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~-g~~l~v~~a~ 81 (277)
++++|||+|||..+++++|+++|+.||.|..|.+..+. +|||||+|.+.++|.+|+..|||..|. |+.|.|.|++
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR--HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 67899999999999999999999999999999997433 589999999999999999999999999 9999999985
No 212
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.63 E-value=1.8e-15 Score=107.51 Aligned_cols=69 Identities=17% Similarity=0.263 Sum_probs=63.4
Q ss_pred cceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC--CCEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS--GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 108 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~--~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
..+|||+|||+.+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|++|++.|++..++|+.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i 75 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 75 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 46899999999999999999999999999999998865 3699999999999999999999999999543
No 213
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.63 E-value=3.2e-15 Score=105.15 Aligned_cols=73 Identities=19% Similarity=0.131 Sum_probs=66.0
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC----CEEEEEEcChhhHHHHHHHcCCceeccceeeeE
Q 023798 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (277)
+..+|||+|||+.+++++|+++|++||.|..+.++.++.+ +||||+|.+.++|++|++.|||..+.|+.+.+.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~ 81 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQ 81 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4579999999999999999999999999999999988653 599999999999999999999999999654443
No 214
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=3.2e-15 Score=104.13 Aligned_cols=76 Identities=13% Similarity=0.203 Sum_probs=66.8
Q ss_pred CCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEec--CCCCEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD--GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 103 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~--~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
......++|||+|||+.+++++|+++|.+||.|..+.+..+ ...+||||+|.+.++|++|++.|++..+.|+.+.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 33456789999999999999999999999999999999987 33459999999999999999999999999955433
No 215
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=6.1e-15 Score=101.91 Aligned_cols=79 Identities=16% Similarity=0.166 Sum_probs=68.5
Q ss_pred CccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecC----CCCEEEEEEcChhhHHHHHHHcCCceeccceeeeEEE
Q 023798 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (277)
Q Consensus 106 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 181 (277)
....+|||+|||..+++++|+++|.+||.|..+.++.+. ..+||||+|.+.++|++|++.|++..+.|+ .+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~ 81 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGR----MLH 81 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSC----EEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCc----EEE
Confidence 356899999999999999999999999999999998775 346999999999999999999999999994 455
Q ss_pred eeccccC
Q 023798 182 VREYDHR 188 (277)
Q Consensus 182 ~~~~~~~ 188 (277)
+......
T Consensus 82 V~~a~~~ 88 (99)
T 1whw_A 82 VLPSTIK 88 (99)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 5554444
No 216
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=5.9e-15 Score=100.13 Aligned_cols=76 Identities=16% Similarity=0.311 Sum_probs=66.1
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccceeeeEEEeec
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~ 184 (277)
..+..+|||+|||..+++++|+++|.+||.|..+.+. .+||||+|.+.++|++|++.|++..+.|+. +.+..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~----l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVN----INVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSSCB----CEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCCcE----EEEEE
Confidence 3456899999999999999999999999999999998 469999999999999999999999999944 45544
Q ss_pred cccC
Q 023798 185 YDHR 188 (277)
Q Consensus 185 ~~~~ 188 (277)
....
T Consensus 77 a~~~ 80 (90)
T 2dnq_A 77 SKNK 80 (90)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 4433
No 217
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=8.9e-15 Score=99.67 Aligned_cols=77 Identities=22% Similarity=0.368 Sum_probs=67.4
Q ss_pred CCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccceeeeEEEee
Q 023798 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (277)
Q Consensus 104 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 183 (277)
......+|||+|||..+++++|+++|.+||.|..+.+..+ ||||+|.+.++|++|++.||+..+.| ..+.+.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQG----KRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS----EEEEEESCHHHHHHHHHHHTTEEETT----EEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC----EEEEEECCHHHHHHHHHHhCCCeeCC----cEEEEE
Confidence 3456689999999999999999999999999999999855 99999999999999999999999999 455555
Q ss_pred ccccC
Q 023798 184 EYDHR 188 (277)
Q Consensus 184 ~~~~~ 188 (277)
...+.
T Consensus 78 ~a~~~ 82 (92)
T 2dgt_A 78 LSTSR 82 (92)
T ss_dssp ESSCC
T ss_pred EccCC
Confidence 55443
No 218
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.61 E-value=1.4e-15 Score=118.85 Aligned_cols=77 Identities=22% Similarity=0.362 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccC-ceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccC-CceEEEEEcc
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G-~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~-g~~l~v~~a~ 81 (277)
.++++|||+|||..+++++|+++|+.|| .|..|.+..+ .+|||||+|.+.++|.+|+..|||..|. |+.|.|.|+.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST--TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 3589999999999999999999999999 9999999543 3799999999999999999999999999 9999999986
Q ss_pred C
Q 023798 82 G 82 (277)
Q Consensus 82 ~ 82 (277)
.
T Consensus 196 ~ 196 (198)
T 1qm9_A 196 S 196 (198)
T ss_dssp C
T ss_pred c
Confidence 4
No 219
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.61 E-value=8.8e-15 Score=101.87 Aligned_cols=74 Identities=9% Similarity=0.200 Sum_probs=65.1
Q ss_pred CccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccceeeeEEEeecc
Q 023798 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (277)
Q Consensus 106 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 185 (277)
.+..+|||+|||+.+++++|+++|.+||.|..+.++.+ ||||+|.+.++|++|++.|++..+.|+ .+.+...
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD----YAFIHFDERDGAVKAMEEMNGKDLEGE----NIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESSHHHHHHHHHHHTTEEETTE----EEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----EEEEEeCCHHHHHHHHHHHCCCccCCC----EEEEEEc
Confidence 45689999999999999999999999999999998754 999999999999999999999999994 4555544
Q ss_pred cc
Q 023798 186 DH 187 (277)
Q Consensus 186 ~~ 187 (277)
.+
T Consensus 81 ~~ 82 (103)
T 2dgu_A 81 KP 82 (103)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 220
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=8.4e-15 Score=102.00 Aligned_cols=81 Identities=15% Similarity=0.202 Sum_probs=69.7
Q ss_pred CCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC----CEEEEEEcChhhHHHHHHHcCCceeccceeeeE
Q 023798 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (277)
Q Consensus 104 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (277)
......+|||+|||..+++++|+++|.+||.|..+.++.++.. +||||+|.+.++|++|++.|++..+.|+ .
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~ 86 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHL----I 86 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTE----E
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCc----E
Confidence 3456789999999999999999999999999999999988543 5999999999999999999999999994 4
Q ss_pred EEeeccccC
Q 023798 180 VRVREYDHR 188 (277)
Q Consensus 180 i~~~~~~~~ 188 (277)
|.+....+.
T Consensus 87 l~v~~a~~~ 95 (103)
T 2cq0_A 87 LNVEWAKPS 95 (103)
T ss_dssp CEEEESSCC
T ss_pred EEEEECCCC
Confidence 555544433
No 221
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=5.9e-15 Score=101.20 Aligned_cols=70 Identities=13% Similarity=0.191 Sum_probs=64.2
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
+..+|||+|||..+++++|+++|.+||.|..+.++.++. .+||||+|.+.++|++|++.||+..+.|+.+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 77 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 77 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 457999999999999999999999999999999998754 4699999999999999999999999999544
No 222
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.61 E-value=1.9e-14 Score=102.23 Aligned_cols=81 Identities=21% Similarity=0.256 Sum_probs=69.7
Q ss_pred CCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC----CEEEEEEcChhhHHHHHHHcCCceeccceeeeE
Q 023798 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (277)
Q Consensus 104 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (277)
......+|||+|||..+++++|+++|.+||.|..+.++.+... +||||+|.+.++|++|++.||+..+.| ..
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 96 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM----KR 96 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT----EE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC----EE
Confidence 3446689999999999999999999999999999999988643 499999999999999999999999999 45
Q ss_pred EEeeccccC
Q 023798 180 VRVREYDHR 188 (277)
Q Consensus 180 i~~~~~~~~ 188 (277)
+.+....+.
T Consensus 97 l~V~~a~~~ 105 (115)
T 2cpz_A 97 LKVQLKRSK 105 (115)
T ss_dssp CEEECCCCS
T ss_pred EEEEEcCCC
Confidence 555554443
No 223
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6.9e-15 Score=102.25 Aligned_cols=77 Identities=22% Similarity=0.294 Sum_probs=67.7
Q ss_pred CCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceeccceeeeE
Q 023798 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (277)
Q Consensus 104 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (277)
...+..+|||+|||..+++++|+++|.+||.|..+.++.++. .+||||+|.+.++|++|++.||+..+.|+.+.+.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 344668999999999999999999999999999999988753 4699999999999999999999999999655444
Q ss_pred E
Q 023798 180 V 180 (277)
Q Consensus 180 i 180 (277)
.
T Consensus 88 ~ 88 (102)
T 1x5s_A 88 Q 88 (102)
T ss_dssp E
T ss_pred E
Confidence 3
No 224
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.61 E-value=4.8e-15 Score=97.72 Aligned_cols=68 Identities=13% Similarity=0.169 Sum_probs=62.6
Q ss_pred cceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccceee
Q 023798 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (277)
Q Consensus 108 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (277)
..-|+|+||++.+++++|+++|.+||+|..+.+.. ++|||||+|.+.++|.+|++.||+..+.|+.+.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~ 74 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLANTTIF 74 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 46899999999999999999999999999999866 578999999999999999999999999995443
No 225
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=7.5e-15 Score=101.48 Aligned_cols=74 Identities=14% Similarity=0.285 Sum_probs=65.4
Q ss_pred CCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecC----CCCEEEEEEcChhhHHHHHHHcCCceeccceee
Q 023798 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (277)
Q Consensus 103 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (277)
.......+|||+|||..+++++|+++|.+||.|..+.++.++ ..+||||+|.+.++|++|++ |++..+.|+.+.
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~ 82 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVE 82 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEE
Confidence 334566899999999999999999999999999999998875 35699999999999999999 999999995443
No 226
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.61 E-value=2.8e-14 Score=101.40 Aligned_cols=81 Identities=19% Similarity=0.263 Sum_probs=69.6
Q ss_pred CCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 103 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
.......+|||+|||..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|++|++.|++..+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---- 85 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR---- 85 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTE----
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCE----
Confidence 3445678999999999999999999999999999999998854 35999999999999999999999999994
Q ss_pred EEEeecccc
Q 023798 179 YVRVREYDH 187 (277)
Q Consensus 179 ~i~~~~~~~ 187 (277)
.|.+.....
T Consensus 86 ~l~V~~a~~ 94 (115)
T 2dgo_A 86 QIRTNWATR 94 (115)
T ss_dssp ECEEEESSC
T ss_pred EEEEEEccC
Confidence 444544443
No 227
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.1e-15 Score=102.91 Aligned_cols=80 Identities=20% Similarity=0.192 Sum_probs=69.1
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecC----CCCEEEEEEcChhhHHHHHHHcCCceeccceeeeEE
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 180 (277)
..+..+|||+|||..+++++|+++|.+||.|..+.++.+. ..+||||+|.+.++|++|++.|++..+.| ..+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l 84 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG----RTI 84 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETT----EEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----cEE
Confidence 3466899999999999999999999999999999998774 35699999999999999999999999999 455
Q ss_pred EeeccccC
Q 023798 181 RVREYDHR 188 (277)
Q Consensus 181 ~~~~~~~~ 188 (277)
.+....+.
T Consensus 85 ~V~~a~~~ 92 (102)
T 2cqb_A 85 RVNLAKPM 92 (102)
T ss_dssp EEEECCCC
T ss_pred EEEeCCCC
Confidence 55555443
No 228
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=7.7e-15 Score=100.78 Aligned_cols=79 Identities=16% Similarity=0.168 Sum_probs=68.6
Q ss_pred CCccceEEccCCCCCCCHHHHH----HHHhhcCceeEEEEEecCC-CCEEEEEEcChhhHHHHHHHcCCceeccceeeeE
Q 023798 105 RRSEYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRDGS-GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~i~~~~~~~~~~-~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (277)
....++|||+|||..+++++|+ ++|.+||.|..+.++.+.. .+||||+|.+.++|++|++.|||..++| ..
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g----r~ 81 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGS----KK 81 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETT----EE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECC----eE
Confidence 3456799999999999999999 9999999999999987644 5799999999999999999999999999 45
Q ss_pred EEeecccc
Q 023798 180 VRVREYDH 187 (277)
Q Consensus 180 i~~~~~~~ 187 (277)
+.+....+
T Consensus 82 l~V~~a~~ 89 (96)
T 2dgx_A 82 ILVSLATG 89 (96)
T ss_dssp EEEEECCC
T ss_pred EEEEEcCC
Confidence 55555443
No 229
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.61 E-value=3.2e-15 Score=119.45 Aligned_cols=76 Identities=22% Similarity=0.385 Sum_probs=70.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccC-ceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccC-CceEEEEEccC
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD-GHRLRVELAHG 82 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G-~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~-g~~l~v~~a~~ 82 (277)
++++|||+|||+.+++++|+++|+.|| .|..|.+.. ..+|||||+|.+.++|.+|+..|||..|. |+.|.|.|+..
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ--KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS--SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE--CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 579999999999999999999999999 999999953 24789999999999999999999999999 99999999864
No 230
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.60 E-value=1.1e-15 Score=119.88 Aligned_cols=76 Identities=14% Similarity=0.216 Sum_probs=67.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCce--eEEEeecC-CCCCceEEEEEcChHHHHHHHHhcCCCccCCc----eEEE
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPI--AHIDLKIP-PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH----RLRV 77 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v--~~v~~~~~-~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~----~l~v 77 (277)
|+++|||+|||+.+|+++|+++|++||.| ..+.+..+ +..+|||||+|.+.++|.+||..|||..|.|. ++.|
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~v 201 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTL 201 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEEC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEE
Confidence 67899999999999999999999999999 88988554 35569999999999999999999999999876 6777
Q ss_pred EEc
Q 023798 78 ELA 80 (277)
Q Consensus 78 ~~a 80 (277)
.+|
T Consensus 202 k~~ 204 (205)
T 3tyt_A 202 KLC 204 (205)
T ss_dssp EEE
T ss_pred Eec
Confidence 765
No 231
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.4e-14 Score=102.22 Aligned_cols=82 Identities=10% Similarity=0.161 Sum_probs=70.1
Q ss_pred CCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcC------Cceec
Q 023798 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLD------DSEFR 172 (277)
Q Consensus 103 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~------g~~~~ 172 (277)
....+..+|||+|||+.+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|++|++.|+ +..++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 3345678999999999999999999999999999999997743 5699999999999999999999 99999
Q ss_pred cceeeeEEEeeccccC
Q 023798 173 NAFSRAYVRVREYDHR 188 (277)
Q Consensus 173 g~~~~~~i~~~~~~~~ 188 (277)
| ..+.+....++
T Consensus 90 g----~~l~v~~a~~~ 101 (111)
T 1x4h_A 90 G----RQLKVDLAVTR 101 (111)
T ss_dssp S----CEEEEECCCCC
T ss_pred C----EEEEEEECCCC
Confidence 9 45555555443
No 232
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.60 E-value=4.8e-15 Score=100.12 Aligned_cols=72 Identities=15% Similarity=0.214 Sum_probs=65.1
Q ss_pred cceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecC-----CCCEEEEEEcChhhHHHHHHHcCCceeccceeeeE
Q 023798 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (277)
Q Consensus 108 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~-----~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (277)
.++|||+|||..+++++|+++|.+||.|..+.+..+. ..+||||+|.+.++|++|++.|||..++|+.+.+.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 80 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITAT 80 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEE
Confidence 4699999999999999999999999999999998876 56799999999999999999999999999554433
No 233
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=3.5e-15 Score=102.95 Aligned_cols=69 Identities=7% Similarity=0.057 Sum_probs=61.6
Q ss_pred CccceEEccCCCC-CCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCc--eecccee
Q 023798 106 RSEYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS--EFRNAFS 176 (277)
Q Consensus 106 ~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~--~~~g~~~ 176 (277)
.+..+|||+|||+ .+++++|+++|.+||.|..+.++.++ +||||+|++.++|+.|++.|++. .+.|+.+
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k--g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI--NEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS--SCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC--CEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 4568999999999 99999999999999999999998754 69999999999999999998864 5888543
No 234
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=6.9e-15 Score=101.24 Aligned_cols=74 Identities=22% Similarity=0.281 Sum_probs=65.8
Q ss_pred CCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 104 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
......+|||+|||+.+++++|+++|.+||.|. +.++.+...+||||+|.+.++|++|++.|||..++|+.+.+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 345568999999999999999999999999997 67777778889999999999999999999999999955433
No 235
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=7.4e-15 Score=101.31 Aligned_cols=78 Identities=17% Similarity=0.265 Sum_probs=67.5
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC-------CCEEEEEEcChhhHHHHHHHcCCceeccceeeeE
Q 023798 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-------GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~-------~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (277)
+..+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|++|++.|++..+.|+ .
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~ 79 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGH----K 79 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTE----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCe----E
Confidence 457999999999999999999999999999999987654 35999999999999999999999999994 4
Q ss_pred EEeeccccC
Q 023798 180 VRVREYDHR 188 (277)
Q Consensus 180 i~~~~~~~~ 188 (277)
+.+......
T Consensus 80 l~V~~a~~~ 88 (98)
T 2cpf_A 80 LEVRISERA 88 (98)
T ss_dssp CEEECSSCS
T ss_pred EEEEEccCC
Confidence 555554443
No 236
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.60 E-value=4.9e-15 Score=104.46 Aligned_cols=68 Identities=16% Similarity=0.189 Sum_probs=61.7
Q ss_pred CccceEEccCCCCC-CCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccceee
Q 023798 106 RSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (277)
Q Consensus 106 ~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (277)
....+|||+|||+. +++++|+++|.+||.|..+.+ ..+||||+|.+.++|++|++.|++..++|+.+.
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 93 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLD 93 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECC
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 34579999999999 999999999999999999998 456999999999999999999999999995433
No 237
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=3.8e-14 Score=100.52 Aligned_cols=75 Identities=21% Similarity=0.321 Sum_probs=66.7
Q ss_pred CCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC---CEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 104 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
......+|||+|||..+++++|+++|.+||.|..+.++.+..+ +||||+|.+.++|++|++.|++..+.|+.+.+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 3445789999999999999999999999999999999988653 49999999999999999999999999954433
No 238
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-14 Score=100.67 Aligned_cols=83 Identities=7% Similarity=0.106 Sum_probs=71.9
Q ss_pred CccceEEccCCCCCCCHHHHHHHHhhcCcee-EEEEEecCCC----CEEEEEEcChhhHHHHHHHcCCceeccceeeeEE
Q 023798 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVC-FSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (277)
Q Consensus 106 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~-~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 180 (277)
....+|||+|||..+++++|+++|.+||.|. .+.++.++.. +||||+|.+.++|++|++.|||..+.|......+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4568999999999999999999999999999 9999988643 5999999999999999999999999997754456
Q ss_pred EeeccccC
Q 023798 181 RVREYDHR 188 (277)
Q Consensus 181 ~~~~~~~~ 188 (277)
.+....+.
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 66655443
No 239
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.3e-14 Score=101.19 Aligned_cols=79 Identities=19% Similarity=0.386 Sum_probs=67.2
Q ss_pred CCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC-----CCEEEEEEcChhhHHHHHHHcCCceeccceee
Q 023798 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (277)
Q Consensus 103 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~-----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (277)
.+..+..+|||+|||..+++++|+++|..|| |..+.++.+.. .+||||+|.+.++|++|+ .|++..+.|+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~-- 85 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKR-- 85 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEE--
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcE--
Confidence 3445668999999999999999999999999 99999988754 469999999999999999 99999999954
Q ss_pred eEEEeecccc
Q 023798 178 AYVRVREYDH 187 (277)
Q Consensus 178 ~~i~~~~~~~ 187 (277)
+.+.....
T Consensus 86 --l~V~~a~~ 93 (104)
T 1wi8_A 86 --IRVDVADQ 93 (104)
T ss_dssp --CEEEECCC
T ss_pred --EEEEEccC
Confidence 44444433
No 240
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1e-14 Score=99.82 Aligned_cols=75 Identities=16% Similarity=0.248 Sum_probs=66.9
Q ss_pred CCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceeccceee
Q 023798 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (277)
Q Consensus 103 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (277)
....+..+|||+|||..+++++|+++|.+||.|..+.++.++. .+||||+|.+.++|++|++.||+..+.|+.+.
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 4445678999999999999999999999999999999988754 46999999999999999999999999995443
No 241
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.5e-14 Score=101.41 Aligned_cols=75 Identities=16% Similarity=0.284 Sum_probs=66.3
Q ss_pred CCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecC-----CCCEEEEEEcChhhHHHHHHHc-CCceecccee
Q 023798 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-----SGTTGIVDYTNYDDMKHAIKKL-DDSEFRNAFS 176 (277)
Q Consensus 103 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~-----~~~~afv~f~~~~~a~~a~~~l-~g~~~~g~~~ 176 (277)
.......+|||+|||..+++++|+++|.+||.|..+.++.+. ..+||||+|.+.++|++|++.| ++..+.|+.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 344567899999999999999999999999999999998772 3469999999999999999999 9999999544
Q ss_pred e
Q 023798 177 R 177 (277)
Q Consensus 177 ~ 177 (277)
.
T Consensus 90 ~ 90 (107)
T 2cph_A 90 V 90 (107)
T ss_dssp E
T ss_pred E
Confidence 3
No 242
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.7e-14 Score=97.87 Aligned_cols=73 Identities=19% Similarity=0.238 Sum_probs=66.1
Q ss_pred CCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC----CEEEEEEcChhhHHHHHHHcCCceeccce
Q 023798 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (277)
Q Consensus 103 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (277)
....+..+|||+|||..+++++|+++|.+||.|..+.++.++.. +||||+|.+.++|++|++.|++..+.|+.
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 86 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 44557789999999999999999999999999999999987543 59999999999999999999999999943
No 243
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.1e-14 Score=98.73 Aligned_cols=75 Identities=21% Similarity=0.355 Sum_probs=65.7
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccceeeeEEEeec
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~ 184 (277)
.....+|||+|||..+++++|+++|.+||.|..+.+..+ ||||+|.+.++|++|++.|++..++|+ .+.+..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD----YAFVHMEKEADAKAAIAQLNGKEVKGK----RINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESCHHHHHHHHHHHTTCEETTE----ECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC----EEEEEECCHHHHHHHHHHhCCCEECCc----EEEEEE
Confidence 345679999999999999999999999999999999855 999999999999999999999999994 445544
Q ss_pred ccc
Q 023798 185 YDH 187 (277)
Q Consensus 185 ~~~ 187 (277)
..+
T Consensus 78 a~~ 80 (90)
T 2dnp_A 78 STK 80 (90)
T ss_dssp SCC
T ss_pred CCC
Confidence 433
No 244
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.59 E-value=9.8e-15 Score=99.73 Aligned_cols=68 Identities=15% Similarity=0.238 Sum_probs=61.1
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCce--eccc
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSE--FRNA 174 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~--~~g~ 174 (277)
..+..+|||+|||..+++++|.++|++||.|..+.++. .+++|||+|++.++|+.|++.|++.. +.|+
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~--~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr 87 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP--KKRQALVEFEDVLGACNAVNYAADNQIYIAGH 87 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCEEETTE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhcCCCceeCCc
Confidence 34567999999999999999999999999999999875 35799999999999999999999876 6784
No 245
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.4e-14 Score=101.96 Aligned_cols=77 Identities=16% Similarity=0.219 Sum_probs=67.6
Q ss_pred CccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccceeeeEEEeecc
Q 023798 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREY 185 (277)
Q Consensus 106 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 185 (277)
...++|||+|||..+++++|+++|.+||.|..+.+..+ .+||||+|.+.++|+.|+..|+|..+.|+ .+.+...
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEGH----VVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETTE----ECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECCc----EEEEEec
Confidence 35689999999999999999999999999999999877 67999999999999999999999999994 4555544
Q ss_pred ccC
Q 023798 186 DHR 188 (277)
Q Consensus 186 ~~~ 188 (277)
...
T Consensus 97 ~~~ 99 (109)
T 1x4g_A 97 KES 99 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 246
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.59 E-value=1.1e-14 Score=102.03 Aligned_cols=72 Identities=15% Similarity=0.231 Sum_probs=64.2
Q ss_pred CCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCcee---ccce
Q 023798 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEF---RNAF 175 (277)
Q Consensus 104 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~---~g~~ 175 (277)
......+|||+|||..+++++|+++|.+||.|..+.++.++. .+||||+|.+.++|++|++.|++..+ .|..
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 345668999999999999999999999999999999988753 46999999999999999999999987 6643
No 247
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=2.4e-14 Score=98.39 Aligned_cols=76 Identities=25% Similarity=0.382 Sum_probs=65.0
Q ss_pred CCCeEEEcCCC-------CCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEE
Q 023798 5 ASRTLYVGNLP-------GDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (277)
Q Consensus 5 ~~~~l~v~nL~-------~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 77 (277)
..+.|.|.... ..+++++|+++|++||+|..|.|+ +.++|||||+|.+.++|+.|+..+++ +.|++|.|
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V 84 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS--SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKI 84 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE--SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEE
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc--cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEE
Confidence 45677777655 458999999999999999999997 47799999999999999999997554 67999999
Q ss_pred EEccCCC
Q 023798 78 ELAHGGR 84 (277)
Q Consensus 78 ~~a~~~~ 84 (277)
.|+....
T Consensus 85 ~~a~~~~ 91 (100)
T 2d9o_A 85 SWLEGQP 91 (100)
T ss_dssp ECSSCCC
T ss_pred EEccCCC
Confidence 9987554
No 248
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.59 E-value=3.4e-15 Score=124.64 Aligned_cols=77 Identities=18% Similarity=0.323 Sum_probs=67.7
Q ss_pred CCCCCCeEEEcC--CCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccC---Cc--e
Q 023798 2 SSRASRTLYVGN--LPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFD---GH--R 74 (277)
Q Consensus 2 ~~~~~~~l~v~n--L~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~---g~--~ 74 (277)
+..|+++|||+| |+..+|+++|+++|++||+|..|.+.. ++|||||+|.+.++|++|++.|||..+. |+ .
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 467999999999 588999999999999999999988853 5899999999999999999999999873 45 5
Q ss_pred EEEEEcc
Q 023798 75 LRVELAH 81 (277)
Q Consensus 75 l~v~~a~ 81 (277)
|.|.++.
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 7777764
No 249
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=3.4e-14 Score=98.88 Aligned_cols=79 Identities=18% Similarity=0.284 Sum_probs=67.3
Q ss_pred CCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 103 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
.+..+..+|||+|||..+++++|+++|.+|| |..+.++.+.. .+||||+|.+.++|++|+ .|++..+.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~---- 83 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDR---- 83 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTE----
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCe----
Confidence 3445678999999999999999999999997 99999998865 359999999999999999 8999999994
Q ss_pred EEEeecccc
Q 023798 179 YVRVREYDH 187 (277)
Q Consensus 179 ~i~~~~~~~ 187 (277)
.|.+....+
T Consensus 84 ~l~V~~a~~ 92 (103)
T 2dng_A 84 SLRVDIAEG 92 (103)
T ss_dssp ECEEEECCC
T ss_pred EEEEEEecC
Confidence 444544443
No 250
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.6e-14 Score=99.39 Aligned_cols=70 Identities=17% Similarity=0.231 Sum_probs=63.4
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceec--ccee
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR--NAFS 176 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~--g~~~ 176 (277)
..+..+|||+|||..+++++|+++|.+||.|..+.+..+ .+||||+|.+.++|++|++.||+..+. |+.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l 85 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRL 85 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEE
Confidence 345689999999999999999999999999999998866 569999999999999999999999999 7443
No 251
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.2e-14 Score=98.18 Aligned_cols=71 Identities=8% Similarity=0.072 Sum_probs=62.2
Q ss_pred CCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHc--CCceecccee
Q 023798 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL--DDSEFRNAFS 176 (277)
Q Consensus 104 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l--~g~~~~g~~~ 176 (277)
...+..+|||+|||+.+++++|+++|.+||.|..+.++.+ ++||||+|.+.++|+.|++.| ++..+.|+.+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 3446689999999999999999999999999999988765 679999999999999999987 4677888443
No 252
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.2e-14 Score=100.27 Aligned_cols=74 Identities=24% Similarity=0.244 Sum_probs=66.1
Q ss_pred CCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 103 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
.......+|||+|||..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|++|++.|++..+.|+.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 3445678999999999999999999999999999999988753 4699999999999999999999999999544
No 253
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.2e-14 Score=99.93 Aligned_cols=77 Identities=16% Similarity=0.224 Sum_probs=66.5
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhhcCceeEE-EEEecC----CCCEEEEEEcChhhHHHHHHHcCCceeccceeeeEEE
Q 023798 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~-~~~~~~----~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 181 (277)
+.++|||+|||..+++++|+++|.+||.|..+ .++.++ ..+||||+|.+.++|++|++.|++..+.|+ .+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~l~ 79 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR----PIT 79 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTE----ECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCE----EEE
Confidence 45799999999999999999999999999999 888774 346999999999999999999999999994 444
Q ss_pred eecccc
Q 023798 182 VREYDH 187 (277)
Q Consensus 182 ~~~~~~ 187 (277)
+....+
T Consensus 80 v~~a~~ 85 (96)
T 1x5t_A 80 VSYAFK 85 (96)
T ss_dssp EEESCC
T ss_pred EEEecc
Confidence 444433
No 254
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.58 E-value=1.4e-14 Score=97.09 Aligned_cols=72 Identities=21% Similarity=0.210 Sum_probs=64.7
Q ss_pred CccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceeccceee
Q 023798 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (277)
Q Consensus 106 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (277)
.+..+|||+|||+.+++++|+++|.+||.|..+.++.++. .+||||+|.+.++|+.|++.|||..++|+.+.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 80 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 80 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 3568999999999999999999999999999999987743 45999999999999999999999999995543
No 255
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=8e-15 Score=101.73 Aligned_cols=67 Identities=18% Similarity=0.228 Sum_probs=62.8
Q ss_pred ceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 109 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
++|||+|||..+++++|+++|++||.|..+.+..+ ..+||||+|.+.++|++|++.|++..+.|..+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 67 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRV 67 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCcEE
Confidence 47999999999999999999999999999999988 67799999999999999999999999999553
No 256
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.58 E-value=1.7e-14 Score=97.12 Aligned_cols=72 Identities=19% Similarity=0.262 Sum_probs=64.4
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
+..+|||+|||..+++++|+++|++||.|..+.++.+.. .+||||+|.+.++|++|++.|+|..++|+.+.+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 80 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 80 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 457999999999999999999999999999999998853 359999999999999999999999999955433
No 257
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.57 E-value=1.7e-14 Score=98.19 Aligned_cols=74 Identities=18% Similarity=0.377 Sum_probs=65.5
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecC--CCCEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG--SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~--~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
.....+|||+|||..+++++|+++|.+||.|..+.+..+. ..+||||+|.+.++|++|++.|++..+.|+.+.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 80 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDV 80 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3456899999999999999999999999999999998753 2469999999999999999999999999965443
No 258
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=5.3e-14 Score=97.36 Aligned_cols=79 Identities=19% Similarity=0.358 Sum_probs=68.3
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC---CEEEEEEcChhhHHHHHHHcCCceeccceeeeEEE
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 181 (277)
.....+|||+|||..+++++|+++|.+||.|..+.++.+..+ +||||+|.+.++|++|++.|++..+.|+ .+.
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~ 89 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKEN----IIK 89 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSC----EEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCE----EEE
Confidence 345689999999999999999999999999999999987632 5999999999999999999999999994 455
Q ss_pred eecccc
Q 023798 182 VREYDH 187 (277)
Q Consensus 182 ~~~~~~ 187 (277)
+....+
T Consensus 90 v~~a~~ 95 (100)
T 2do4_A 90 VAISNS 95 (100)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 544443
No 259
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.57 E-value=1.5e-14 Score=101.52 Aligned_cols=76 Identities=16% Similarity=0.234 Sum_probs=66.4
Q ss_pred CCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccceeeeEEEee
Q 023798 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (277)
Q Consensus 104 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 183 (277)
......+|||+|||..+++++|+++|.+||.|..+.+. .+||||+|.+.++|++|++.|+|..++| ..+.+.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFAN----QPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETT----EECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEE
Confidence 34566899999999999999999999999999999998 6799999999999999999999999999 445555
Q ss_pred cccc
Q 023798 184 EYDH 187 (277)
Q Consensus 184 ~~~~ 187 (277)
....
T Consensus 99 ~a~~ 102 (108)
T 2jvo_A 99 YSKL 102 (108)
T ss_dssp SCSC
T ss_pred EecC
Confidence 4443
No 260
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.57 E-value=3.2e-14 Score=99.36 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=63.1
Q ss_pred CccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC---CCEEEEEEcChhhHHHHHHHcCCceecc
Q 023798 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (277)
Q Consensus 106 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~g 173 (277)
....+|||+|||..+++++|+++|.+||.|..+.+..++. .+||||+|.+.++|++|++.||+..+.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 4568999999999999999999999999999999998864 3599999999999999999999999887
No 261
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.57 E-value=1.5e-14 Score=99.29 Aligned_cols=69 Identities=13% Similarity=0.257 Sum_probs=63.3
Q ss_pred cceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 108 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
..+|||+|||..+++++|+++|++||.|..+.++.+.. .+||||+|.+.++|++|++.|+|..++|+.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 74 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFL 74 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 46999999999999999999999999999999988754 4699999999999999999999999999443
No 262
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=6.8e-14 Score=97.69 Aligned_cols=81 Identities=14% Similarity=0.224 Sum_probs=69.8
Q ss_pred CCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC----CEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 103 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
.......+|||+|||+.+++++|+++|.+||.|..+.++.++.. +||||+|.+.++|++|++. ++..++| .
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g----~ 85 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG----R 85 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT----E
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC----E
Confidence 34456789999999999999999999999999999999988543 5999999999999999998 9999999 4
Q ss_pred EEEeeccccC
Q 023798 179 YVRVREYDHR 188 (277)
Q Consensus 179 ~i~~~~~~~~ 188 (277)
.+.+....++
T Consensus 86 ~l~V~~a~~~ 95 (105)
T 2dh8_A 86 NIDPKPCTPR 95 (105)
T ss_dssp EEBCCCSCCS
T ss_pred EEEEEEccCC
Confidence 5666555444
No 263
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=7.6e-14 Score=96.34 Aligned_cols=76 Identities=20% Similarity=0.183 Sum_probs=65.9
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhc--CceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccceeeeEEEe
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 182 (277)
.....+|||+|||+.+++++|+++|.+| |.|..+.+.. +||||+|.+.++|++|+..||+..+.| ..+.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~----g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR----DYAFVHFSNREDAVEAMKALNGKVLDG----SPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS----SEEEEEESSHHHHHHHHHHHSSEEETT----EEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC----CeEEEEeCCHHHHHHHHHHhCCCEeCC----cEEEE
Confidence 3456899999999999999999999999 8999888763 499999999999999999999999999 45666
Q ss_pred eccccC
Q 023798 183 REYDHR 188 (277)
Q Consensus 183 ~~~~~~ 188 (277)
....+.
T Consensus 84 ~~a~~~ 89 (99)
T 2cpd_A 84 TLAKPV 89 (99)
T ss_dssp ECCCCC
T ss_pred EECCCC
Confidence 655443
No 264
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.4e-14 Score=102.44 Aligned_cols=70 Identities=7% Similarity=0.067 Sum_probs=62.6
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCC--ceecccee
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD--SEFRNAFS 176 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g--~~~~g~~~ 176 (277)
..+..+|||+|||+.+++++|+++|++||.|..+.++.+ ++||||+|++.++|++|++.|++ ..+.|+.+
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 345689999999999999999999999999999999876 57999999999999999999874 57888544
No 265
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.56 E-value=3.1e-14 Score=94.98 Aligned_cols=68 Identities=16% Similarity=0.274 Sum_probs=62.6
Q ss_pred ceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 109 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
++|||+|||..+++++|+++|.+||.|..+.++.++. .+||||+|.+.++|+.|++.|+|..++|+.+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 73 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 73 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 5899999999999999999999999999999998854 3599999999999999999999999999543
No 266
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.56 E-value=5.1e-14 Score=100.52 Aligned_cols=76 Identities=21% Similarity=0.287 Sum_probs=67.3
Q ss_pred CCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 103 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
......++|||+|||..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|++|++.|||..++|+.+.+
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3445678999999999999999999999999999999987743 569999999999999999999999999965443
No 267
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.9e-14 Score=98.81 Aligned_cols=73 Identities=16% Similarity=0.163 Sum_probs=64.9
Q ss_pred CccceEEccCCCC-CCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccceeeeEEEe
Q 023798 106 RSEYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (277)
Q Consensus 106 ~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 182 (277)
.+..+|||+|||+ .+++++|+++|.+||.|..+.+. .+||||+|.+.++|+.|++.|++..+.|+.+.+....
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 4568999999998 99999999999999999999996 5699999999999999999999999999766555443
No 268
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.56 E-value=1.7e-13 Score=100.77 Aligned_cols=82 Identities=16% Similarity=0.194 Sum_probs=70.5
Q ss_pred CCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 103 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
.......+|||+|||..+++++|+++|..||.|..+.++.+.. .+||||+|.+.++|++|++.|++..+.|+
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---- 112 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK---- 112 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC----
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe----
Confidence 3445678999999999999999999999999999999998865 35999999999999999999999999994
Q ss_pred EEEeeccccC
Q 023798 179 YVRVREYDHR 188 (277)
Q Consensus 179 ~i~~~~~~~~ 188 (277)
.|.+......
T Consensus 113 ~l~v~~a~~~ 122 (139)
T 1u6f_A 113 RLKVALAASG 122 (139)
T ss_dssp EEEEEESSCC
T ss_pred EEEEEECCCC
Confidence 4555544433
No 269
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=2.2e-14 Score=99.62 Aligned_cols=70 Identities=20% Similarity=0.283 Sum_probs=61.5
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCc--eecccee
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDS--EFRNAFS 176 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~--~~~g~~~ 176 (277)
..+..+|||+|||+.+++++|+++|.+||.|..+.++.+ ++||||+|.+.++|++|++.|++. .+.|+.+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 345689999999999999999999999999999988764 679999999999999999988765 4888544
No 270
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.56 E-value=1.7e-14 Score=104.45 Aligned_cols=72 Identities=21% Similarity=0.244 Sum_probs=65.2
Q ss_pred CCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecC----CCCEEEEEEcChhhHHHHHHHcCCceeccce
Q 023798 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (277)
Q Consensus 104 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (277)
...+..+|||+|||..+++++|+++|.+||.|..+.++.++ ..+||||+|.+.++|++|++.|+|..++|+.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~ 117 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 117 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34567899999999999999999999999999999998774 3569999999999999999999999999944
No 271
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=2.1e-14 Score=101.33 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=69.2
Q ss_pred CCccceEEccCCCCCCCHHHHH---HHHhhcCceeEEEEEecCC-------CCEEEEEEcChhhHHHHHHHcCCceeccc
Q 023798 105 RRSEYRVLVTGLPSSASWQDLK---DHMRRAGDVCFSQVFRDGS-------GTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~---~~f~~~g~i~~~~~~~~~~-------~~~afv~f~~~~~a~~a~~~l~g~~~~g~ 174 (277)
.....+|||+|||+.+++++|. ++|.+||.|..+.+..+.. .+||||+|.+.++|++|++.||+..++|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g- 90 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG- 90 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT-
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC-
Confidence 3456799999999999999999 9999999999999987753 2699999999999999999999999999
Q ss_pred eeeeEEEeeccccC
Q 023798 175 FSRAYVRVREYDHR 188 (277)
Q Consensus 175 ~~~~~i~~~~~~~~ 188 (277)
..+.+.....+
T Consensus 91 ---r~l~V~~a~~k 101 (111)
T 2cpi_A 91 ---RTLKASLGTTK 101 (111)
T ss_dssp ---EEEEEESCCCC
T ss_pred ---EEEEEEecccc
Confidence 45566555443
No 272
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.56 E-value=4.1e-14 Score=99.21 Aligned_cols=77 Identities=18% Similarity=0.150 Sum_probs=68.2
Q ss_pred CCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC---CCEEEEEEcChhhHHHHHHHcCCceeccceeeeE
Q 023798 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (277)
Q Consensus 103 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (277)
....+..+|||+|||..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|++|++.|++..+.|+.+.+.
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 4445678999999999999999999999999999999998863 3499999999999999999999999999655443
No 273
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.3e-14 Score=99.00 Aligned_cols=76 Identities=14% Similarity=0.179 Sum_probs=63.2
Q ss_pred CccceEEccCCCCCCCHHHHHHHHhhcCc-eeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCC-ceeccceeeeEEEee
Q 023798 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD-SEFRNAFSRAYVRVR 183 (277)
Q Consensus 106 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g-~~~~g~~~~~~i~~~ 183 (277)
....+|||+|||..+++++|+++|.+||. |..+.+. ..+||||+|.+.++|++|++.||+ ..++|+ .+.+.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~----~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELHGK----IMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEETTE----ECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeECCE----EEEEE
Confidence 35579999999999999999999999999 6655553 356999999999999999999999 999994 44555
Q ss_pred ccccC
Q 023798 184 EYDHR 188 (277)
Q Consensus 184 ~~~~~ 188 (277)
...+.
T Consensus 79 ~a~~~ 83 (93)
T 2cqh_A 79 YSVSK 83 (93)
T ss_dssp ECCCC
T ss_pred EccCc
Confidence 44443
No 274
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.56 E-value=3.2e-15 Score=106.09 Aligned_cols=78 Identities=26% Similarity=0.345 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCCC--CC---CHHHHHHHHhccCceeEEEeecC-------CCCCceEEEEEcChHHHHHHHHhcCCCccC
Q 023798 4 RASRTLYVGNLPG--DI---REREVEDLFYKYGPIAHIDLKIP-------PRPPGYAFVEFEEARDAEDAIRGRDGYDFD 71 (277)
Q Consensus 4 ~~~~~l~v~nL~~--~~---t~~~L~~~F~~~G~v~~v~~~~~-------~~~~g~afV~f~~~~~A~~a~~~l~g~~~~ 71 (277)
.|+++|+|.|+-. ++ -+++|+++|++||+|..|.|+.+ +.++|+|||+|.++++|.+|+..|||..|+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 4899999999942 22 36899999999999999999543 245699999999999999999999999999
Q ss_pred CceEEEEEcc
Q 023798 72 GHRLRVELAH 81 (277)
Q Consensus 72 g~~l~v~~a~ 81 (277)
|+.|.|.++.
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999999985
No 275
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=3.5e-14 Score=98.08 Aligned_cols=70 Identities=16% Similarity=0.212 Sum_probs=63.9
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
..+..+|||+|||..+++++|+++|.+||.|..+.+..+ .+||||+|.+.++|++|++.|++..+.|+.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~--kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l 81 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD--KGFGFIRLETRTLAEIAKVELDNMPLRGKQL 81 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT--TTEEEEECSSSHHHHHHHHHHTTCCBTTBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC--CCEEEEEECCHHHHHHHHHHhCCCEeCCceE
Confidence 345689999999999999999999999999999999865 5799999999999999999999999999544
No 276
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.56 E-value=4.7e-14 Score=97.44 Aligned_cols=76 Identities=18% Similarity=0.289 Sum_probs=67.3
Q ss_pred CCCCccceEEccCCCCCCCHHHHHHHHhhcCceeE--------EEEEecCC----CCEEEEEEcChhhHHHHHHHcCCce
Q 023798 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSE 170 (277)
Q Consensus 103 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~ 170 (277)
......++|||+|||..+++++|+++|.+||.|.. +.++.++. .+||||+|.+.++|++|++.|+|..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 44456789999999999999999999999999999 99988854 3599999999999999999999999
Q ss_pred eccceeee
Q 023798 171 FRNAFSRA 178 (277)
Q Consensus 171 ~~g~~~~~ 178 (277)
+.|+.+.+
T Consensus 88 ~~g~~l~V 95 (99)
T 2la6_A 88 FSGNPIKV 95 (99)
T ss_dssp SSSSBCEE
T ss_pred eCCcEEEE
Confidence 99965543
No 277
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=4.5e-14 Score=98.78 Aligned_cols=75 Identities=17% Similarity=0.291 Sum_probs=67.0
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceeccceeeeE
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (277)
.....+|||+|||..+++++|+++|++||.|..+.++.+.. .+||||+|.+.++|++|++.|+|..+.|+.+.+.
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34568999999999999999999999999999999998865 3599999999999999999999999999655443
No 278
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.56 E-value=3.2e-14 Score=97.45 Aligned_cols=74 Identities=16% Similarity=0.191 Sum_probs=66.2
Q ss_pred CCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC---CCEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 103 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
.......+|||+|||+.+++++|+++|.+||.|..+.+..++. .+||||+|.+.++|++|++.|++..+.|+.+
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPI 87 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEE
Confidence 3445678999999999999999999999999999999998865 3599999999999999999999999999543
No 279
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=3.6e-14 Score=95.12 Aligned_cols=73 Identities=14% Similarity=0.191 Sum_probs=65.0
Q ss_pred CCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHc-CCceeccceee
Q 023798 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL-DDSEFRNAFSR 177 (277)
Q Consensus 103 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l-~g~~~~g~~~~ 177 (277)
+......+|||+|||..+++++|+++|.+||.|..+.+..+ .+||||+|.+.++|++|++.| ++..++|+.+.
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~--kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR--QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC--CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 33456689999999999999999999999999999999875 569999999999999999999 99999995543
No 280
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.56 E-value=4.5e-14 Score=105.92 Aligned_cols=74 Identities=14% Similarity=0.200 Sum_probs=66.1
Q ss_pred CccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC----CEEEEEEcChhhHHHHHHHcCCceeccceeeeE
Q 023798 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (277)
Q Consensus 106 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (277)
....+|||+|||..+++++|+++|.+||.|..|.++.+... +||||+|.+.++|++|++.|++..+.|+.+.+.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45689999999999999999999999999999999988653 599999999999999999999999999544333
No 281
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.9e-14 Score=99.20 Aligned_cols=75 Identities=17% Similarity=0.200 Sum_probs=65.6
Q ss_pred CCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 103 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
.......+|||+|||..+++++|+++|.+||.|..+.++.++. .+||||+|.+.++|++|++.+++ .+.|+.+.+
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 4445678999999999999999999999999999999988753 46999999999999999999998 899854433
No 282
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=4.6e-14 Score=99.95 Aligned_cols=81 Identities=21% Similarity=0.369 Sum_probs=68.8
Q ss_pred CCCccceEEccCCCCCCCHHHHHHHHhhcCcee--------EEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCcee
Q 023798 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVC--------FSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEF 171 (277)
Q Consensus 104 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~--------~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~ 171 (277)
.....++|||+|||..+++++|+++|.+||.|. .+.++.+.. .+||||+|.+.++|++|++.||+..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999998 688887743 46999999999999999999999999
Q ss_pred ccceeeeEEEeeccccC
Q 023798 172 RNAFSRAYVRVREYDHR 188 (277)
Q Consensus 172 ~g~~~~~~i~~~~~~~~ 188 (277)
.| ..+.+......
T Consensus 91 ~g----~~l~V~~a~~~ 103 (113)
T 2cpe_A 91 QG----SKLKVSLARKK 103 (113)
T ss_dssp TT----EECEEECSSCC
T ss_pred CC----CEEEEEECCCC
Confidence 99 45555554443
No 283
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.4e-14 Score=99.32 Aligned_cols=81 Identities=16% Similarity=0.244 Sum_probs=64.0
Q ss_pred CCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccceeeeEEEee
Q 023798 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVR 183 (277)
Q Consensus 104 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 183 (277)
...+..+|||+|||..+++++|+++|.+||.|..+........+||||+|.+.++|++|++.|++..+.|+ .+.+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGR----AIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTE----EEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCe----EEEEE
Confidence 34467899999999999999999999999988322221223457999999999999999999999999994 45555
Q ss_pred ccccC
Q 023798 184 EYDHR 188 (277)
Q Consensus 184 ~~~~~ 188 (277)
...+.
T Consensus 87 ~a~~~ 91 (101)
T 2fc9_A 87 LQGPR 91 (101)
T ss_dssp ECSSC
T ss_pred EcCCC
Confidence 44443
No 284
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=4.5e-14 Score=100.32 Aligned_cols=71 Identities=8% Similarity=0.102 Sum_probs=64.0
Q ss_pred CccceEEccCCCCCCCHHHHHHHHhhcCce----eEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDV----CFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 106 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i----~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
.+..+|||+|||..+++++|.++|.+||.| ..+.+......+||||+|.+.++|+.|++.|++..+.|+.+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 456899999999999999999999999998 67777766677899999999999999999999999999544
No 285
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=5.2e-14 Score=98.10 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=64.9
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhh-cCceeEEEEEecCC---CCEEEEEEcChhhHHHHHHHcCCce-ecccee
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRR-AGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSE-FRNAFS 176 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~-~g~i~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~-~~g~~~ 176 (277)
..+..+|||+|||..+++++|+++|.+ ||.|..+.++.+.. .+||||+|.+.++|++|++.|++.. ++|+.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 345689999999999999999999999 99999999998863 2499999999999999999999999 999543
No 286
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.55 E-value=1.2e-13 Score=99.49 Aligned_cols=78 Identities=18% Similarity=0.127 Sum_probs=68.6
Q ss_pred CCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecC---CCCEEEEEEcChhhHHHHHHHcCCceeccceeeeE
Q 023798 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (277)
Q Consensus 103 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~---~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (277)
......++|||+|||..+++++|+++|.+||.|..+.+..+. ..+||||+|.+.++|++|++.|+|..+.|+.+.+.
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 345667899999999999999999999999999999998875 34699999999999999999999999999654444
Q ss_pred E
Q 023798 180 V 180 (277)
Q Consensus 180 i 180 (277)
+
T Consensus 110 ~ 110 (124)
T 2kt5_A 110 L 110 (124)
T ss_dssp E
T ss_pred E
Confidence 3
No 287
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3.1e-14 Score=98.77 Aligned_cols=75 Identities=16% Similarity=0.249 Sum_probs=66.6
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC---CCEEEEEEcChhhHHHHHHHcCCceeccceeeeEE
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 180 (277)
.....+|||+|||+++++++|+++|++||.|..|.++.++. .|||||+|.+.++|+.|+. +++..++|+.+.+..
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999998753 5699999999999999999 999999997665543
No 288
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.54 E-value=1.4e-14 Score=98.89 Aligned_cols=72 Identities=7% Similarity=0.100 Sum_probs=61.9
Q ss_pred CCCccceEEccCCCCCCCHHHHHHHHhhcCc--eeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCce----ecc
Q 023798 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSE----FRN 173 (277)
Q Consensus 104 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~--i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~----~~g 173 (277)
......+|||+|||+.+|+++|+++|++||. +..|.++.++. .|||||+|.+.++|++|++.|||.. ++|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3445679999999999999999999999995 66888887753 4699999999999999999999974 788
Q ss_pred ce
Q 023798 174 AF 175 (277)
Q Consensus 174 ~~ 175 (277)
+.
T Consensus 85 r~ 86 (95)
T 2lkz_A 85 KT 86 (95)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 289
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.54 E-value=8.1e-15 Score=99.54 Aligned_cols=75 Identities=16% Similarity=0.255 Sum_probs=63.4
Q ss_pred ceEEccCCCCCCCHHHHHHHHhhcC-ceeEEEEEecC----CCCEEEEEEcChhhHHHHHHHcC-CceeccceeeeEEEe
Q 023798 109 YRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLD-DSEFRNAFSRAYVRV 182 (277)
Q Consensus 109 ~~l~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~----~~~~afv~f~~~~~a~~a~~~l~-g~~~~g~~~~~~i~~ 182 (277)
.+|||+|||+.+++++|+++|++|| .|..+.++.++ ..+||||+|.+.++|++|++.++ +..++| ..+.+
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g----r~i~V 77 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG----QKVSM 77 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT----EEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC----EEEEE
Confidence 5899999999999999999999999 89999998764 34699999999999999999875 557888 45555
Q ss_pred ecccc
Q 023798 183 REYDH 187 (277)
Q Consensus 183 ~~~~~ 187 (277)
....+
T Consensus 78 ~~a~~ 82 (91)
T 2lxi_A 78 HYSDP 82 (91)
T ss_dssp ECCCS
T ss_pred EEcCC
Confidence 54443
No 290
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.54 E-value=1.6e-15 Score=105.54 Aligned_cols=69 Identities=23% Similarity=0.446 Sum_probs=59.0
Q ss_pred cCCCCCCCHHHHHHHH------------hccCceeEEEeecC--CCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEE
Q 023798 12 GNLPGDIREREVEDLF------------YKYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRV 77 (277)
Q Consensus 12 ~nL~~~~t~~~L~~~F------------~~~G~v~~v~~~~~--~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 77 (277)
.||+..+++++|+++| ++||+|..|.|+.+ +.++|||||+|.++++|++|+..|||..|+|++|.|
T Consensus 21 ~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v 100 (104)
T 1jmt_A 21 DGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHA 100 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCE
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEE
Confidence 4444555677666666 99999999999653 567999999999999999999999999999999999
Q ss_pred EEc
Q 023798 78 ELA 80 (277)
Q Consensus 78 ~~a 80 (277)
.|+
T Consensus 101 ~~s 103 (104)
T 1jmt_A 101 ELS 103 (104)
T ss_dssp EEC
T ss_pred EEc
Confidence 986
No 291
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.54 E-value=4.8e-14 Score=99.35 Aligned_cols=73 Identities=14% Similarity=0.184 Sum_probs=65.6
Q ss_pred CCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 104 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
......+|||+|||..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|+.|+..|+|..++|+.+
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 98 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 98 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 345678999999999999999999999999999999987753 4699999999999999999999999999543
No 292
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3e-14 Score=100.18 Aligned_cols=75 Identities=17% Similarity=0.218 Sum_probs=66.5
Q ss_pred CCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC--CCEEEEEEcChhhHHHHHHHcCCceeccceee
Q 023798 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS--GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (277)
Q Consensus 103 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~--~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (277)
.......+|||+|||..+++++|+++|++||.|..+.+..+.. .+||||+|.+.++|++|++.|+|..++|+.+.
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3345668999999999999999999999999999999987743 57999999999999999999999999995443
No 293
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2e-14 Score=101.37 Aligned_cols=74 Identities=20% Similarity=0.270 Sum_probs=65.4
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccceeeeEE
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 180 (277)
....++|||+|||+.+++++|+++|.+||.|..+.+.. ..+||||+|.+.++|+.|++.|||..+.|+.+.+..
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999988874 456999999999999999999999999996654443
No 294
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.54 E-value=3e-14 Score=100.32 Aligned_cols=77 Identities=18% Similarity=0.217 Sum_probs=66.6
Q ss_pred CCCCeEEEcCCCCCC----------CHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCc
Q 023798 4 RASRTLYVGNLPGDI----------REREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH 73 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~----------t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~ 73 (277)
-|+++|.|.|+-... -+++|+++|++||.|..|.|..+ .++|+|||+|.+.++|.+|+..|||..|+|+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~-~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN-SAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT-CTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC-CCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 478999999994322 23478999999999999999654 3589999999999999999999999999999
Q ss_pred eEEEEEcc
Q 023798 74 RLRVELAH 81 (277)
Q Consensus 74 ~l~v~~a~ 81 (277)
.|.|.++.
T Consensus 84 ~i~v~~~~ 91 (114)
T 3s6e_A 84 MITAAYVP 91 (114)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEEc
Confidence 99999985
No 295
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=4.5e-14 Score=96.96 Aligned_cols=75 Identities=21% Similarity=0.317 Sum_probs=66.9
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeEE-EEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccceeeeE
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (277)
....++|||+|||+.+++++|+++|.+||.|..+ .++.++..+.|||+|.+.++|+.|+..|||..+.|+.+.+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456899999999999999999999999999999 58888777789999999999999999999999999654433
No 296
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.54 E-value=4.1e-14 Score=98.10 Aligned_cols=68 Identities=13% Similarity=0.128 Sum_probs=62.5
Q ss_pred CccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccce
Q 023798 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (277)
Q Consensus 106 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (277)
...++|||+|||..+++++|+++|.+||.|..+.+. ...+||||+|.+.++|+.|+..|+|..++|+.
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 92 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALANFPFQGRN 92 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 346799999999999999999999999999999988 45679999999999999999999999999944
No 297
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=8.4e-15 Score=98.24 Aligned_cols=70 Identities=19% Similarity=0.294 Sum_probs=63.9
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
+..+|||+|||..+++++|+++|.+||.|..+.++.++. .+||||+|.+.++|+.|++.|||..+.|+..
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 77 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMA 77 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEE
Confidence 457999999999999999999999999999999988753 5699999999999999999999999998543
No 298
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.53 E-value=5.8e-14 Score=98.48 Aligned_cols=74 Identities=16% Similarity=0.201 Sum_probs=66.2
Q ss_pred CCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC----CEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 103 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
.......+|||+|||..+++++|+++|++||.|..+.++.++.. +||||+|.+.++|+.|++.|+|..+.|+.+
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 33456689999999999999999999999999999999988543 599999999999999999999999999544
No 299
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.53 E-value=5.4e-14 Score=104.57 Aligned_cols=67 Identities=19% Similarity=0.258 Sum_probs=62.4
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceecc
Q 023798 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g 173 (277)
....|||+||++.+++++|.++|++||.|..|.++....++||||+|.+.++|++|++.|||..+.|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g 111 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN 111 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 4568999999999999999999999999999999877667799999999999999999999999976
No 300
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.1e-13 Score=98.37 Aligned_cols=78 Identities=15% Similarity=0.246 Sum_probs=68.2
Q ss_pred CccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceeccceeeeEEE
Q 023798 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVR 181 (277)
Q Consensus 106 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 181 (277)
....+|||+|||..+++++|+++|.+||.|..+.++.++. .+||||+|.+.++|++|++. ++..++| ..+.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g----~~l~ 99 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG----RVVE 99 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECC----EEEE
Confidence 4568999999999999999999999999999999998754 46999999999999999997 9999999 5566
Q ss_pred eeccccC
Q 023798 182 VREYDHR 188 (277)
Q Consensus 182 ~~~~~~~ 188 (277)
+....++
T Consensus 100 V~~a~~~ 106 (116)
T 1x4b_A 100 PKRAVAR 106 (116)
T ss_dssp EECCSSC
T ss_pred EEECCCC
Confidence 6655444
No 301
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.53 E-value=6.7e-14 Score=96.19 Aligned_cols=70 Identities=16% Similarity=0.187 Sum_probs=62.7
Q ss_pred CCCccceEEccCCCC-CCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccceee
Q 023798 104 SRRSEYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (277)
Q Consensus 104 ~~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (277)
...+..+|||+|||. .+++++|+++|.+||.|..+.+. .+||||+|.+.++|++|++.|+|..++|+.+.
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 345678999999998 99999999999999999999984 56999999999999999999999999995443
No 302
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=4.9e-14 Score=97.12 Aligned_cols=74 Identities=14% Similarity=0.168 Sum_probs=63.8
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
....++|||+|||..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|++|++.|++..+.|+.+.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 89 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 44568999999999999999999999999998776666543 369999999999999999999999999954433
No 303
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.52 E-value=2.7e-14 Score=98.73 Aligned_cols=73 Identities=21% Similarity=0.216 Sum_probs=65.9
Q ss_pred ccceEEccCCCC------CCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceecc-ce
Q 023798 107 SEYRVLVTGLPS------SASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRN-AF 175 (277)
Q Consensus 107 ~~~~l~v~~l~~------~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g-~~ 175 (277)
..++|||+|||. .+++++|+++|++||.|..+.++.++. .|||||+|.+.++|++|++.|||..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 357999999999 999999999999999999999998865 3699999999999999999999999998 65
Q ss_pred eeeE
Q 023798 176 SRAY 179 (277)
Q Consensus 176 ~~~~ 179 (277)
+.+.
T Consensus 85 l~V~ 88 (100)
T 3ns6_A 85 LFLY 88 (100)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 5444
No 304
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.52 E-value=7.3e-15 Score=107.31 Aligned_cols=114 Identities=11% Similarity=0.112 Sum_probs=62.5
Q ss_pred ceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHH
Q 023798 46 GYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDL 125 (277)
Q Consensus 46 g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l 125 (277)
++||.+|..++.+..++..+... +.|...--.. +............+|||+|||+++++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~-----------------g~~~~~~~~~~~~~lfV~nLp~~~te~dL 63 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGS-----------------GDSEFTVQSTTGHCVHMRGLPYKATENDI 63 (139)
T ss_dssp -------------------------------------------------------------CCCCEECCSCCTTCCHHHH
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCC-----------------CCcccCCCCCCCCEEEEeCCCCCCCHHHH
Confidence 57888888888877777654322 2222110000 00011123345679999999999999999
Q ss_pred HHHHhhcCceeEEEEEecCC---CCEEEEEEcChhhHHHHHHHcCCceeccceeeeE
Q 023798 126 KDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (277)
Q Consensus 126 ~~~f~~~g~i~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (277)
+++|.+|| |..|.++.++. ++||||+|.+.++|++|+ .+|+..+.|+.+.+.
T Consensus 64 ~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 64 YNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp HHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred HHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 99999999 77999887754 469999999999999999 799999999655443
No 305
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.52 E-value=8.4e-14 Score=93.73 Aligned_cols=71 Identities=17% Similarity=0.273 Sum_probs=62.9
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
.....+|||+|||+.+++++|+++|.+||.|..+.++.++. .+||||+|.+.++|++|++ +++..++|+.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i 82 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVI 82 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEE
Confidence 34568999999999999999999999999999999998865 3599999999999999996 58888998544
No 306
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.52 E-value=2e-14 Score=97.50 Aligned_cols=68 Identities=15% Similarity=0.191 Sum_probs=60.1
Q ss_pred ceEEccCCCCCCCHHHHHHHHhhcC--ceeEEEEEecCCC----CEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 109 YRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 109 ~~l~v~~l~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
.+|||+|||..+++++|+++|.+|| .|..+.++.+... |||||+|.+.++|++|++.|||..++|+.+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i 75 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 75 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEE
Confidence 4799999999999999999999999 9999999988543 599999999999999999999999999543
No 307
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.4e-13 Score=92.70 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=65.2
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccceeeeEEEeec
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~ 184 (277)
..+.++|||+|| .+++++|+++|.+||.|..+.+. ...+||||+|.+.++|++|+..|++..+.| ..+.+..
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVES----VQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEETT----EEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEEE
Confidence 345689999996 89999999999999999999885 556799999999999999999999999999 5566665
Q ss_pred cccC
Q 023798 185 YDHR 188 (277)
Q Consensus 185 ~~~~ 188 (277)
..+.
T Consensus 84 a~~~ 87 (97)
T 1x5p_A 84 ARKQ 87 (97)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 5444
No 308
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=5.1e-14 Score=98.50 Aligned_cols=73 Identities=11% Similarity=0.085 Sum_probs=62.9
Q ss_pred CCccceEEccCCCCC-CCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCC--ceeccceeeeE
Q 023798 105 RRSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD--SEFRNAFSRAY 179 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g--~~~~g~~~~~~ 179 (277)
..+..+|||+|||++ +++++|+++|.+||.|..+.++.. ++||||+|.+.++|+.|++.|++ ..+.|+.+.+.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM--KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT--TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC--CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 446789999999998 999999999999999999999753 57999999999999999998864 56888654443
No 309
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.52 E-value=2.1e-14 Score=95.35 Aligned_cols=66 Identities=11% Similarity=0.147 Sum_probs=60.0
Q ss_pred ceEEccCCCCCC------CHHHHHHHHhhcCceeEEEEEec--CCCCEEEEEEcChhhHHHHHHHcCCceeccc
Q 023798 109 YRVLVTGLPSSA------SWQDLKDHMRRAGDVCFSQVFRD--GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (277)
Q Consensus 109 ~~l~v~~l~~~~------~~~~l~~~f~~~g~i~~~~~~~~--~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~ 174 (277)
++|||+|||..+ ++++|+++|++||.|..+.+... ...+||||+|.+.++|++|++.|||..++|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 589999999999 77999999999999999998743 2357999999999999999999999999996
No 310
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.7e-13 Score=93.64 Aligned_cols=67 Identities=15% Similarity=0.169 Sum_probs=58.3
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC-CEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG-TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~-~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
...+|||+|||..+++++|+++|.+||.|..| +.+... .||||+|.+.++|++|++ |++..++|+.+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l 74 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRL 74 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEE
Confidence 44699999999999999999999999999987 333322 299999999999999999 99999999543
No 311
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.52 E-value=5.1e-14 Score=102.42 Aligned_cols=74 Identities=5% Similarity=0.114 Sum_probs=64.9
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeE--EEEEecC----CCCEEEEEEcChhhHHHHHHHcCCc----eeccc
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF--SQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDS----EFRNA 174 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~--~~~~~~~----~~~~afv~f~~~~~a~~a~~~l~g~----~~~g~ 174 (277)
.....+|||+|||+.+++++|+++|.+||.|.. |.++.++ ..|||||+|.+. +|.+|+..|+|. .++|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345679999999999999999999999999976 8998876 346999999999 999999999999 99996
Q ss_pred eeeeE
Q 023798 175 FSRAY 179 (277)
Q Consensus 175 ~~~~~ 179 (277)
.+.+.
T Consensus 99 ~l~V~ 103 (131)
T 2m2b_A 99 TINVE 103 (131)
T ss_dssp CCCCE
T ss_pred EEEEE
Confidence 54443
No 312
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.1e-13 Score=98.17 Aligned_cols=71 Identities=18% Similarity=0.234 Sum_probs=64.0
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
.....+|||+|||..+++++|+++|..||.|..+.++.+.. .+||||+|.+.++|++|+ .|++..+.|+.+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 96 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPI 96 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEE
Confidence 34668999999999999999999999999999999987654 469999999999999999 999999999443
No 313
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=8.1e-14 Score=100.26 Aligned_cols=74 Identities=11% Similarity=0.122 Sum_probs=63.9
Q ss_pred CCccceEEccCCCCCCCHHHHH----HHHhhcCceeEEEEEec-CCCCEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 105 RRSEYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRD-GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~i~~~~~~~~-~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
..+..+|||+|||+.+++++|+ ++|++||.|..|.+... ...|||||+|.+.++|+.|+..|||..+.|+.+.+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 3456799999999999999876 69999999999888654 45679999999999999999999999999965433
No 314
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5.3e-13 Score=92.77 Aligned_cols=79 Identities=22% Similarity=0.338 Sum_probs=66.1
Q ss_pred CCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceeccceeeeE
Q 023798 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (277)
Q Consensus 104 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (277)
......+|||+|||..+++++|+++|.+||.|..+.++.++. .+||||+|.+.++|++|+. ++..++| ..
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g----~~ 84 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDG----RW 84 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETT----EE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCC----eE
Confidence 345668999999999999999999999999999999998864 3599999999999999999 4678888 45
Q ss_pred EEeeccccC
Q 023798 180 VRVREYDHR 188 (277)
Q Consensus 180 i~~~~~~~~ 188 (277)
+.+.....+
T Consensus 85 l~v~~a~~~ 93 (103)
T 2cqg_A 85 CDCKLPNSK 93 (103)
T ss_dssp EEEECCCTT
T ss_pred EEEEecCCC
Confidence 555554443
No 315
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.51 E-value=1.1e-13 Score=93.50 Aligned_cols=75 Identities=17% Similarity=0.324 Sum_probs=65.4
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceeccceeeeEEEe
Q 023798 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 182 (277)
...+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|++|+ .|++..+.|+ .+.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~----~l~V 79 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGR----QIKV 79 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTE----ECEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCc----EEEE
Confidence 357999999999999999999999999999999998753 459999999999999999 9999999994 4455
Q ss_pred eccc
Q 023798 183 REYD 186 (277)
Q Consensus 183 ~~~~ 186 (277)
...+
T Consensus 80 ~~a~ 83 (89)
T 3ucg_A 80 IPKR 83 (89)
T ss_dssp EETT
T ss_pred EEcc
Confidence 4443
No 316
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.51 E-value=2.9e-14 Score=116.21 Aligned_cols=80 Identities=23% Similarity=0.262 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec--CCCCCceEEEEEcChHHHHHHHHhcCC-CccC---CceEEE
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI--PPRPPGYAFVEFEEARDAEDAIRGRDG-YDFD---GHRLRV 77 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g-~~~~---g~~l~v 77 (277)
.+.++|||+|||+.+|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..||+ ..+. +++|.|
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4678999999999999999999999999999999854 567799999999999999999999954 4444 999999
Q ss_pred EEccCC
Q 023798 78 ELAHGG 83 (277)
Q Consensus 78 ~~a~~~ 83 (277)
.++...
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 998754
No 317
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.51 E-value=1.2e-13 Score=98.00 Aligned_cols=75 Identities=17% Similarity=0.197 Sum_probs=66.4
Q ss_pred CccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC-CCEEEEEEcChhhHHHHHHHcCCceeccceeeeEE
Q 023798 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS-GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (277)
Q Consensus 106 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~-~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 180 (277)
.+..+|||+|||..+++++|.++|..||.|..+.++.+.. .+||||+|.+.++|+.|+..|||..+.|+.+.+..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3557999999999999999999999999999999987643 57999999999999999999999999996554433
No 318
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.51 E-value=2.8e-13 Score=96.59 Aligned_cols=75 Identities=9% Similarity=0.083 Sum_probs=63.3
Q ss_pred cceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCE-EEEEEcChhhHHHHHHHcCCceeccceeeeEEEeeccc
Q 023798 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTT-GIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYD 186 (277)
Q Consensus 108 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~-afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~ 186 (277)
...|||+||++.+++++|.++|++||.|..|.++.. .+| |||+|.+.++|+.|++.|||..+.|.. ..+++...+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~--~~l~V~~Ak 100 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYAGC--CTLKIEYAR 100 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBTTB--SEEEEECCS
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCC--eEEEEEEec
Confidence 346789999999999999999999999999999764 375 999999999999999999999998842 244454443
No 319
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.50 E-value=3.9e-14 Score=97.04 Aligned_cols=71 Identities=14% Similarity=0.157 Sum_probs=62.0
Q ss_pred CccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC----CEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 106 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
.+..+|||+|||+.+++++|+++|.+||.|..+.++.+... +||||+|.+.++|++|++.||+..+.|+.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l 87 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 87 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEE
Confidence 34589999999999999999999999999987777765433 599999999999999999999999999543
No 320
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.3e-13 Score=95.62 Aligned_cols=75 Identities=13% Similarity=0.194 Sum_probs=63.7
Q ss_pred CCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC---CCEEEEEEcChhhHHHHHHHcCCceeccceeeeE
Q 023798 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (277)
Q Consensus 103 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (277)
.......+|||+|||+.+++++|+++|.+|| +..+.++.++. ++||||+|.+.++|++|++ +|+..++|+.+.+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 3445668999999999999999999999999 45899988864 2499999999999999995 79999999755443
No 321
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.50 E-value=1.4e-13 Score=102.88 Aligned_cols=72 Identities=14% Similarity=0.081 Sum_probs=64.1
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhhcC--ceeEEEEEecCCC----CEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 107 SEYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
...+|||+|||+.+++++|+++|..|| .|..+.++.+... |||||+|.+.++|++|++.|||..++|+.+.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V 131 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDV 131 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEE
Confidence 457999999999999999999999999 9999999988543 59999999999999999999999999955443
No 322
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=7.3e-14 Score=97.34 Aligned_cols=73 Identities=26% Similarity=0.372 Sum_probs=65.6
Q ss_pred CccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 106 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
....+|||+|||..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|++|++.|+|..+.|+.+.+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 82 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 82 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 4567999999999999999999999999999999998854 359999999999999999999999999965433
No 323
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=3.9e-13 Score=91.23 Aligned_cols=71 Identities=15% Similarity=0.243 Sum_probs=63.1
Q ss_pred CCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC---CCEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 104 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
......+|||+|||..+++++|+++|..| .|..+.++.+.. .+||||+|.+.++|++|+. |++..++|+.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i 79 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYI 79 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEE
Confidence 34456899999999999999999999999 999999998843 3599999999999999999 99999999543
No 324
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.49 E-value=1.6e-13 Score=98.78 Aligned_cols=75 Identities=17% Similarity=0.314 Sum_probs=65.3
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceeccceeeeEEEe
Q 023798 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRV 182 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 182 (277)
...+|||+|||..+++++|+++|.+||.|..+.++.++. .+||||+|.+.++|+.|+ .|+|..+.|+ .+.+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~----~l~V 109 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGR----TIKV 109 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTE----ECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCe----EEEE
Confidence 468999999999999999999999999999999988743 459999999999999999 7999999994 4445
Q ss_pred eccc
Q 023798 183 REYD 186 (277)
Q Consensus 183 ~~~~ 186 (277)
....
T Consensus 110 ~~a~ 113 (124)
T 2jwn_A 110 LPKR 113 (124)
T ss_dssp EESS
T ss_pred EECC
Confidence 4443
No 325
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=9.2e-14 Score=97.27 Aligned_cols=64 Identities=19% Similarity=0.202 Sum_probs=58.4
Q ss_pred CccceEEc--cCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCcee
Q 023798 106 RSEYRVLV--TGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 171 (277)
Q Consensus 106 ~~~~~l~v--~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~ 171 (277)
.+..+||| +||++.+++++|+++|++||.|..+.++. .++||||+|.+.++|++|++.|||.++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 35678999 77999999999999999999999988764 367999999999999999999999988
No 326
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1.7e-13 Score=95.86 Aligned_cols=71 Identities=21% Similarity=0.291 Sum_probs=62.9
Q ss_pred CCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC---CCEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 104 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
......+|||+|||+.+++++|+++|..| .|..|.++.+.. .|||||+|.+.++|++|+ .+|+..++|+.+
T Consensus 12 ~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i 85 (109)
T 2dnn_A 12 INPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYV 85 (109)
T ss_dssp CCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEE
Confidence 34456899999999999999999999999 899999987754 469999999999999999 699999999543
No 327
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.49 E-value=1.8e-13 Score=96.19 Aligned_cols=77 Identities=16% Similarity=0.235 Sum_probs=63.4
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceeccceeeeEE
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 180 (277)
.....+|||+|||..+++++|+++|..||.|..+.++.+.. .+||||+|.+.++|++|++.+ +..++|+ .+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~----~l 96 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSK----TI 96 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTE----EE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCE----EE
Confidence 34568999999999999999999999999999999988753 469999999999999999976 4888884 44
Q ss_pred Eeeccc
Q 023798 181 RVREYD 186 (277)
Q Consensus 181 ~~~~~~ 186 (277)
.+....
T Consensus 97 ~V~~a~ 102 (109)
T 2rs2_A 97 DPKVAF 102 (109)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 444443
No 328
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.49 E-value=2.2e-13 Score=100.16 Aligned_cols=74 Identities=20% Similarity=0.174 Sum_probs=66.4
Q ss_pred CCCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecC----CCCEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 103 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
.......+|||+|||..+++++|+++|.+||.|..+.++.++ ..+||||+|.+.++|++|++.|+|..+.|+.+
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 445567899999999999999999999999999999998774 35699999999999999999999999999544
No 329
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.49 E-value=2.3e-13 Score=97.44 Aligned_cols=67 Identities=21% Similarity=0.272 Sum_probs=60.9
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCE-EEEEEcChhhHHHHHHHcCCceeccc
Q 023798 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTT-GIVDYTNYDDMKHAIKKLDDSEFRNA 174 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~-afv~f~~~~~a~~a~~~l~g~~~~g~ 174 (277)
.-..|||+||++.+++++|.++|++||.|..|.++... +++ |||+|.+.++|+.|++.|||..+.|.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~ 94 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYNA 94 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-TEEEEEEEESCHHHHHHHHHHHTTCEEETT
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-CCcEEEEEECCHHHHHHHHHHcCCCeecCC
Confidence 44678899999999999999999999999999888765 455 99999999999999999999999884
No 330
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.48 E-value=9.9e-14 Score=95.20 Aligned_cols=78 Identities=13% Similarity=0.165 Sum_probs=65.0
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccceeeeEEEeec
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVRE 184 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~ 184 (277)
..+..+|||+|||..+++++|+++|.+||.|..+ .......+||||+|.+.++|++|++.|+|..+.|+ .+.+..
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR----SVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTE----EEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe----EEEEEE
Confidence 3467899999999999999999999999998877 33334457999999999999999999999999994 455554
Q ss_pred ccc
Q 023798 185 YDH 187 (277)
Q Consensus 185 ~~~ 187 (277)
..+
T Consensus 88 a~~ 90 (96)
T 1fjc_A 88 TGE 90 (96)
T ss_dssp CSS
T ss_pred cCC
Confidence 433
No 331
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.48 E-value=1.9e-13 Score=95.31 Aligned_cols=68 Identities=10% Similarity=0.147 Sum_probs=61.3
Q ss_pred ccceEEccCCCCCC------CHHHHHHHHhhcCceeEEEEEec--CCCCEEEEEEcChhhHHHHHHHcCCceeccc
Q 023798 107 SEYRVLVTGLPSSA------SWQDLKDHMRRAGDVCFSQVFRD--GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (277)
Q Consensus 107 ~~~~l~v~~l~~~~------~~~~l~~~f~~~g~i~~~~~~~~--~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~ 174 (277)
..++|||+|||..+ ++++|+++|++||.|..+.++.. ...|||||+|.+.++|+.|+..|||..+.|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 45799999999999 78999999999999999998843 2357999999999999999999999999995
No 332
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.48 E-value=8.4e-14 Score=95.75 Aligned_cols=72 Identities=15% Similarity=0.197 Sum_probs=63.2
Q ss_pred CCccceEEccCCCCCCCHHHHH----HHHhhcCceeEEEEEec-CCCCEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 105 RRSEYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRD-GSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~i~~~~~~~~-~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
..+..+|||+|||..+++++|+ ++|.+||.|..+.+... ...+||||+|.+.++|+.|++.|+|..+.|+.+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3466899999999999999999 99999999999988743 335799999999999999999999999999443
No 333
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=6.4e-14 Score=91.99 Aligned_cols=69 Identities=16% Similarity=0.275 Sum_probs=62.2
Q ss_pred ceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 109 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
++|||+|||..+++++|+++|++||.|..+.+..++. .+||||+|.+.++|++|++.++ ..++|+.+.+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v 73 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDP 73 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEE
Confidence 4799999999999999999999999999999988754 4699999999999999999999 9999965544
No 334
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2.8e-13 Score=94.36 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=64.8
Q ss_pred CCCCccceEEccCCCCCCCHHHHHHHHhhcCceeE-EEEEecC---CCCEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 103 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~-~~~~~~~---~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
.......+|||+|||+.+++++|+++|.+||.|.. +.++.+. ..+||||+|.+.++|++|+.. ++..++|+.+.+
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 34456789999999999999999999999999987 7777653 346999999999999999997 999999965544
Q ss_pred E
Q 023798 179 Y 179 (277)
Q Consensus 179 ~ 179 (277)
.
T Consensus 89 ~ 89 (104)
T 1wg5_A 89 F 89 (104)
T ss_dssp E
T ss_pred E
Confidence 3
No 335
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.47 E-value=2.3e-13 Score=91.51 Aligned_cols=68 Identities=19% Similarity=0.303 Sum_probs=61.7
Q ss_pred CccceEEccCCCCCCCHHHHHHHHhhc----C-------ceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccc
Q 023798 106 RSEYRVLVTGLPSSASWQDLKDHMRRA----G-------DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNA 174 (277)
Q Consensus 106 ~~~~~l~v~~l~~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~ 174 (277)
.+..+|||+|||+.+++++|+++|.+| | .|..+.+..+ .+||||+|.+.++|++|+ .|||..+.|+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--kg~afV~f~~~~~a~~A~-~l~g~~~~g~ 80 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGIIFQGQ 80 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--SSEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--CcEEEEEcCCHHHHHHHH-hcCCCEECCe
Confidence 356899999999999999999999999 8 8998888765 679999999999999999 9999999995
Q ss_pred ee
Q 023798 175 FS 176 (277)
Q Consensus 175 ~~ 176 (277)
.+
T Consensus 81 ~l 82 (87)
T 2hzc_A 81 SL 82 (87)
T ss_dssp EC
T ss_pred EE
Confidence 43
No 336
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.47 E-value=6.2e-14 Score=96.97 Aligned_cols=74 Identities=16% Similarity=0.328 Sum_probs=62.4
Q ss_pred CCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecC-----CCCEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 104 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~-----~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
.....++|||+|||..+++++|+++|..|| |..+.++.+. ..+||||+|.+.++|++|+ .|+|..++|+.+.+
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345678999999999999999999999999 9999998775 3569999999999999999 89999999965443
Q ss_pred E
Q 023798 179 Y 179 (277)
Q Consensus 179 ~ 179 (277)
.
T Consensus 93 ~ 93 (100)
T 2j76_E 93 D 93 (100)
T ss_dssp E
T ss_pred E
Confidence 3
No 337
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.47 E-value=5.9e-13 Score=101.65 Aligned_cols=79 Identities=18% Similarity=0.126 Sum_probs=69.5
Q ss_pred CCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecC---CCCEEEEEEcChhhHHHHHHHcCCceeccceeeeEE
Q 023798 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (277)
Q Consensus 104 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~---~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 180 (277)
.....++|||+|||..+++++|+++|.+||.|..|.+..+. ..+||||+|.+.++|++|++.|++..++|+.+.+.+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999998875 346999999999999999999999999997766555
Q ss_pred Ee
Q 023798 181 RV 182 (277)
Q Consensus 181 ~~ 182 (277)
..
T Consensus 164 a~ 165 (177)
T 2f3j_A 164 VA 165 (177)
T ss_dssp ES
T ss_pred ec
Confidence 43
No 338
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=2.6e-13 Score=90.28 Aligned_cols=62 Identities=19% Similarity=0.316 Sum_probs=54.8
Q ss_pred cceEEccCCCCCCCHHH----HHHHHhhcC-ceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccce
Q 023798 108 EYRVLVTGLPSSASWQD----LKDHMRRAG-DVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (277)
Q Consensus 108 ~~~l~v~~l~~~~~~~~----l~~~f~~~g-~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (277)
.+.|||.|||+.+++++ |.++|.+|| +|..| .+|+|||.|.+.++|+.|++.|+|.++.|+.
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TGCSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CTTCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ecCEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34599999999999888 558999995 99988 2389999999999999999999999999954
No 339
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=7.9e-13 Score=93.66 Aligned_cols=71 Identities=17% Similarity=0.315 Sum_probs=63.9
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC---CCEEEEEEcChhhHHHHHHHcCCceeccce
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (277)
....++|||+|||..+++++|+++|..||.|..+.++.+.. .+||||+|.+.++|++|++.|||..+.+..
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~ 95 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPP 95 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCc
Confidence 34568999999999999999999999999999999998863 259999999999999999999999997643
No 340
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.46 E-value=1e-13 Score=90.51 Aligned_cols=67 Identities=19% Similarity=0.308 Sum_probs=60.6
Q ss_pred eEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceeccceee
Q 023798 110 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (277)
Q Consensus 110 ~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (277)
+|||+|||+.+++++|+++|++||.|..+.++.++. .+||||+|.+.++|++|++ +++..++|+.+.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~ 71 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVE 71 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEE
Confidence 589999999999999999999999999999987753 4699999999999999998 999999996543
No 341
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.1e-13 Score=96.64 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=64.9
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCce-eEEEEEecC---CCCEEEEEEcChhhHHHHHHHcCCceeccceeeeEE
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDV-CFSQVFRDG---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i-~~~~~~~~~---~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 180 (277)
.....+|||+|||+.+++++|+++|..||.| ..|.++.+. ..+||||+|.+.++|++|++. ++..+.|+.+.+..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 3456899999999999999999999999999 888888775 346999999999999999997 99999996544433
No 342
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.46 E-value=3.2e-13 Score=96.24 Aligned_cols=75 Identities=23% Similarity=0.339 Sum_probs=65.6
Q ss_pred CCCccceEEccCCCCCCCHHHHHHHHhhcCc---eeEEEEEecCCC---CEEEEEEcChhhHHHHHHHcCCceeccceee
Q 023798 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (277)
Q Consensus 104 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (277)
.....++|||+|||+.+++++|+++|..||. |..+.++.+..+ +||||+|.+.++|++|++ +++..++|+.+.
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 3445689999999999999999999999999 889999887653 599999999999999999 999999996544
Q ss_pred eE
Q 023798 178 AY 179 (277)
Q Consensus 178 ~~ 179 (277)
+.
T Consensus 92 V~ 93 (118)
T 2db1_A 92 VF 93 (118)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 343
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=9.1e-13 Score=91.38 Aligned_cols=78 Identities=19% Similarity=0.303 Sum_probs=62.9
Q ss_pred CCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceeccceeeeE
Q 023798 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (277)
Q Consensus 104 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (277)
...+..+|||+|||..+++++|+++|..|+ .+.++.+.. .+||||+|.+.++|++|++.|++..+.|+ .
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~ 83 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN----K 83 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE----E
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCe----E
Confidence 345678999999999999999999999875 455555542 35999999999999999999999999994 4
Q ss_pred EEeeccccC
Q 023798 180 VRVREYDHR 188 (277)
Q Consensus 180 i~~~~~~~~ 188 (277)
|.+....++
T Consensus 84 l~V~~a~~~ 92 (102)
T 2fc8_A 84 VTLDWAKPK 92 (102)
T ss_dssp CEEEECCCC
T ss_pred EEEEEecCC
Confidence 555554443
No 344
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2.8e-13 Score=97.47 Aligned_cols=77 Identities=21% Similarity=0.226 Sum_probs=63.6
Q ss_pred CCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEec-C---CCCEEEEEEcChhhHHHHHHHcCCceeccceeeeE
Q 023798 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD-G---SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAY 179 (277)
Q Consensus 104 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-~---~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 179 (277)
+.....+|||+|||+.+++++|+++|..||.|..+.++.+ . ..+||||+|.+.++|++|++ ||+..++|+.+.+.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 3446689999999999999999999999999987444433 2 23599999999999999999 99999999766554
Q ss_pred EE
Q 023798 180 VR 181 (277)
Q Consensus 180 i~ 181 (277)
..
T Consensus 100 ~a 101 (124)
T 1wel_A 100 PI 101 (124)
T ss_dssp EE
T ss_pred EC
Confidence 43
No 345
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2.9e-13 Score=95.16 Aligned_cols=70 Identities=14% Similarity=0.243 Sum_probs=61.9
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhhcCc-eeEEEEE-ec----CCCCEEEEEEcChhhHHHHHHHcC--Cceecccee
Q 023798 107 SEYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVF-RD----GSGTTGIVDYTNYDDMKHAIKKLD--DSEFRNAFS 176 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~-i~~~~~~-~~----~~~~~afv~f~~~~~a~~a~~~l~--g~~~~g~~~ 176 (277)
+.++|||+|||..+++++|+++|.+||. |..+.++ .+ ...+||||+|.+.++|+.|++.|+ +..+.|+.+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 4579999999999999999999999998 9999887 44 345699999999999999999996 589999544
No 346
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.45 E-value=2.4e-13 Score=98.97 Aligned_cols=75 Identities=20% Similarity=0.277 Sum_probs=65.7
Q ss_pred CCCCccceEEccCCCCCCCHHHHHHHHhhcCc---eeEEEEEecCCC---CEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 103 VSRRSEYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDGSG---TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 103 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
+.....++|||+|||+++++++|+++|.+||. |..|.++.+..+ +||||+|.+.++|++|++ +|+..++|+.+
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 34456789999999999999999999999999 889999887653 599999999999999999 99999999654
Q ss_pred ee
Q 023798 177 RA 178 (277)
Q Consensus 177 ~~ 178 (277)
.+
T Consensus 118 ~V 119 (136)
T 2hgl_A 118 EV 119 (136)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 347
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.44 E-value=1.6e-13 Score=92.56 Aligned_cols=67 Identities=22% Similarity=0.325 Sum_probs=61.0
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
...+|||+|||+.+++++|+++|.+| .|..+.+. ...+||||+|.+.++|++|++.|||..+.|+.+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 70 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDL 70 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEE
Confidence 34799999999999999999999999 99999885 566799999999999999999999999999543
No 348
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.44 E-value=8.3e-14 Score=94.39 Aligned_cols=71 Identities=24% Similarity=0.305 Sum_probs=63.9
Q ss_pred ceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceeccceeeeEE
Q 023798 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (277)
Q Consensus 109 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 180 (277)
.+|||+|||..+++++|+++|++||.|..+.+..+.. .+||||+|.+.+ |++|+..|||..++|+.+.+..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEE
Confidence 5899999999999999999999999999999987753 469999999999 9999999999999997655543
No 349
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.44 E-value=3.5e-13 Score=107.23 Aligned_cols=74 Identities=14% Similarity=0.152 Sum_probs=65.5
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhhcC--ceeEEEEEecCCC----CEEEEEEcChhhHHHHHHHcCCceeccceeeeEE
Q 023798 107 SEYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDGSG----TTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 180 (277)
..++|||+||++.+++++|+++|.+|| .|..|.|+.+..+ +||||+|.+.++|++|++.||+..|.|+.+.+.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457899999999999999999999999 9999999988643 4999999999999999999999999996655444
No 350
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.43 E-value=2e-13 Score=95.61 Aligned_cols=76 Identities=11% Similarity=0.183 Sum_probs=65.8
Q ss_pred CCCccceEEccCCCCCCCHHHHHHHHhhcCc---eeEEEEEecCC---CCEEEEEEcChhhHHHHHHHcCCceeccceee
Q 023798 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (277)
Q Consensus 104 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~---i~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (277)
.....++|||+|||+.+++++|+++|..||. |..+.++.+.. .|||||+|.+.++|++|++ +++..++|+.+.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 3446689999999999999999999999998 88999987754 4699999999999999999 999999997654
Q ss_pred eEE
Q 023798 178 AYV 180 (277)
Q Consensus 178 ~~i 180 (277)
+..
T Consensus 86 V~~ 88 (107)
T 2lmi_A 86 VYE 88 (107)
T ss_dssp CEE
T ss_pred EEE
Confidence 443
No 351
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.43 E-value=2e-13 Score=89.17 Aligned_cols=68 Identities=12% Similarity=0.194 Sum_probs=60.4
Q ss_pred eEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 110 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 110 ~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
+|||+|||..+++++|+++|++||.|..+.++.++. .+||||+|.+.++|++|++. ++..+.|+.+.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v 72 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEI 72 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 589999999999999999999999999999987643 56999999999999999994 888899865543
No 352
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.43 E-value=5.6e-13 Score=89.94 Aligned_cols=64 Identities=11% Similarity=0.135 Sum_probs=53.5
Q ss_pred CCCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceec
Q 023798 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (277)
Q Consensus 104 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~ 172 (277)
...+.++|||+|||+++++++|+++|++||.|..+.++.+ ..|||||+|.+.++|++ +++..+.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~----~~~~~~~ 70 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQS----LCGEDLI 70 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHH----HTTCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHH----HcCCCcc
Confidence 3456689999999999999999999999999999999876 67899999999999883 5666554
No 353
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.41 E-value=5.3e-13 Score=92.43 Aligned_cols=69 Identities=14% Similarity=0.175 Sum_probs=59.0
Q ss_pred CccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEE----ecCCCCEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVF----RDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 106 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~----~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
....+|||+|||..+++++|+++|.+||.|.. .++ .....+||||+|.+.++|++|++ |++..+.|+.+
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l 87 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEI 87 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEE
Confidence 35689999999999999999999999998766 222 23456799999999999999999 99999999543
No 354
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=4e-13 Score=90.55 Aligned_cols=73 Identities=11% Similarity=0.158 Sum_probs=58.8
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCcee--ccceeeeEEEeec
Q 023798 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF--RNAFSRAYVRVRE 184 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~--~g~~~~~~i~~~~ 184 (277)
...+|||+|||..+++++|+++|.+||.|..+.++.+ ..+||||+|.+.++|++| ++..+ .| ..+.+..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~----~~~~~~~~g----~~l~v~~ 74 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSL----CGEDLIIKG----ISVHISN 74 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHT----TTCEEEETT----EEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHH----hcCCceeCC----EEEEEEe
Confidence 4579999999999999999999999999999999876 567999999999999753 44444 44 4555555
Q ss_pred cccC
Q 023798 185 YDHR 188 (277)
Q Consensus 185 ~~~~ 188 (277)
..++
T Consensus 75 a~~~ 78 (88)
T 1wf0_A 75 AEPK 78 (88)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 5443
No 355
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.40 E-value=8.9e-13 Score=94.43 Aligned_cols=75 Identities=11% Similarity=0.187 Sum_probs=63.1
Q ss_pred CCCccceEEccCCCCCCCHHHHHHHHhhcCcee--EEEEEecCC---CCEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 104 SRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVC--FSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 104 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~--~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
......+|||+|||+++++++|+++|.+| .|. .|.++.++. .|||||+|.+.++|++|++. ++..++|+.+.+
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 33456789999999999999999999999 676 888887754 46999999999999999984 779999976554
Q ss_pred EE
Q 023798 179 YV 180 (277)
Q Consensus 179 ~i 180 (277)
..
T Consensus 116 ~~ 117 (126)
T 2hgm_A 116 FK 117 (126)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 356
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.40 E-value=9.7e-13 Score=97.11 Aligned_cols=71 Identities=15% Similarity=0.136 Sum_probs=60.7
Q ss_pred CccceEEccCCCCCCCHHHHHHHHhhcCceeE--------EEEE-ecCCCCEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVF-RDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 106 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~--------~~~~-~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
.+.++|||+|||+.+++++|+++|..||.|.. +.+. .....+||||+|.+.++|+.|+..|||..+.|+.+
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 35579999999999999999999999998865 3333 34556799999999999999999999999999443
No 357
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.39 E-value=1.2e-12 Score=93.61 Aligned_cols=70 Identities=13% Similarity=0.179 Sum_probs=61.6
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
....++|||+|| ++++++|+++|++||.|..+.+. ...+||||+|.+.++|++|++.|+|..+.|+.+.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345689999996 69999999999999999999886 55679999999999999999999999999955433
No 358
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.39 E-value=1.7e-12 Score=89.95 Aligned_cols=71 Identities=17% Similarity=0.279 Sum_probs=62.9
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC---CCEEEEEEcChhhHHHHHHHcCCceeccceee
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (277)
....++|||+|||..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|++|+. ++..++|..+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~ 79 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLK 79 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEE
Confidence 44668999999999999999999999999999999998863 2599999999999999999 88888885544
No 359
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1.1e-12 Score=93.76 Aligned_cols=73 Identities=11% Similarity=0.139 Sum_probs=62.2
Q ss_pred CccceEEccCCCCCCCHHHHHHHHhhcCce----eEEEEEecCC---CCEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDV----CFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 106 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i----~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
....+|||+|||+.+++++|+++|.+||.| ..|.++.+.. .+||||+|.+.++|++|++. ++..+.|+.+.+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 345799999999999999999999999875 6788887743 35999999999999999996 999999865444
Q ss_pred E
Q 023798 179 Y 179 (277)
Q Consensus 179 ~ 179 (277)
.
T Consensus 100 ~ 100 (123)
T 2dha_A 100 F 100 (123)
T ss_dssp E
T ss_pred E
Confidence 3
No 360
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=4.3e-12 Score=89.34 Aligned_cols=75 Identities=17% Similarity=0.222 Sum_probs=66.4
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcC-hHHHHHHHHhcC--CCccCCceEEEEE
Q 023798 4 RASRTLYVGNLPGD-IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEE-ARDAEDAIRGRD--GYDFDGHRLRVEL 79 (277)
Q Consensus 4 ~~~~~l~v~nL~~~-~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~-~~~A~~a~~~l~--g~~~~g~~l~v~~ 79 (277)
.+.+.|||+||++. ++.++|+++|+.||+|.+|.+..+. ..|||.|.+ +++|..|+..|| +..|.|..+.+++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~---~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA---KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC---SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC---CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 36789999999999 9999999999999999999997543 379999999 799999999995 7889999988887
Q ss_pred cc
Q 023798 80 AH 81 (277)
Q Consensus 80 a~ 81 (277)
..
T Consensus 93 L~ 94 (121)
T 1owx_A 93 LE 94 (121)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 361
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.05 E-value=6.2e-14 Score=99.73 Aligned_cols=71 Identities=18% Similarity=0.292 Sum_probs=63.2
Q ss_pred CccceEEccCCCCCCCHHHHHHHHhhcCceeE--------EEEEecCC----CCEEEEEEcChhhHHHHHHHcCCceecc
Q 023798 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDGS----GTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (277)
Q Consensus 106 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~g 173 (277)
.+..+|||+|||..+++++|+++|.+||.|.. +.++.++. .+||||+|.+.++|++|++.||+..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35579999999999999999999999999998 78877643 4699999999999999999999999999
Q ss_pred cee
Q 023798 174 AFS 176 (277)
Q Consensus 174 ~~~ 176 (277)
+.+
T Consensus 85 ~~l 87 (116)
T 2lcw_A 85 NPI 87 (116)
Confidence 543
No 362
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.1e-12 Score=92.82 Aligned_cols=60 Identities=15% Similarity=0.250 Sum_probs=53.3
Q ss_pred CccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecC-------CCCEEEEEEcChhhHHHHHHHc
Q 023798 106 RSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDG-------SGTTGIVDYTNYDDMKHAIKKL 166 (277)
Q Consensus 106 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~-------~~~~afv~f~~~~~a~~a~~~l 166 (277)
...++|||+|||+.+++++|+++|.+||.|. +.++.+. ..+||||+|.+.++|++|++.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 3457999999999999999999999999999 7666543 3579999999999999999998
No 363
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.35 E-value=3e-12 Score=90.14 Aligned_cols=71 Identities=11% Similarity=0.200 Sum_probs=61.1
Q ss_pred ceEEccCC----CCCCCHHHHHHHHhhcCceeEEEEEecCCCC----EEEEEEcC----hhh----HHHHHH--HcCCce
Q 023798 109 YRVLVTGL----PSSASWQDLKDHMRRAGDVCFSQVFRDGSGT----TGIVDYTN----YDD----MKHAIK--KLDDSE 170 (277)
Q Consensus 109 ~~l~v~~l----~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~----~afv~f~~----~~~----a~~a~~--~l~g~~ 170 (277)
.+|||+|| |+.+++.+|+++|+.||+|..+.++.|+.++ ||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999998774 99999996 444 788888 789999
Q ss_pred eccceeeeE
Q 023798 171 FRNAFSRAY 179 (277)
Q Consensus 171 ~~g~~~~~~ 179 (277)
++|+.+++.
T Consensus 83 I~Gr~irV~ 91 (136)
T 2j8a_A 83 IMGFKFEVI 91 (136)
T ss_dssp ETTEEEEEE
T ss_pred ecCcEEEEE
Confidence 999544433
No 364
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.32 E-value=1e-11 Score=86.21 Aligned_cols=75 Identities=13% Similarity=0.168 Sum_probs=62.4
Q ss_pred CccceEEccCCCC-----CCCHHHHHHHHhhcCceeEEEEEecC-----CCCEEEEEEcChhhHHHHHHHcCCceeccce
Q 023798 106 RSEYRVLVTGLPS-----SASWQDLKDHMRRAGDVCFSQVFRDG-----SGTTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (277)
Q Consensus 106 ~~~~~l~v~~l~~-----~~~~~~l~~~f~~~g~i~~~~~~~~~-----~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (277)
.+..+|+|.||.. +.++++|+++|++||.|..+.++.++ ..|+|||+|.+.++|++|++.|||..++|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3456899999863 23789999999999999999999864 3579999999999999999999999999965
Q ss_pred eeeEE
Q 023798 176 SRAYV 180 (277)
Q Consensus 176 ~~~~i 180 (277)
+.+..
T Consensus 86 i~v~~ 90 (105)
T 2pe8_A 86 VKACF 90 (105)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 54443
No 365
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=1.1e-11 Score=81.79 Aligned_cols=76 Identities=16% Similarity=0.252 Sum_probs=64.1
Q ss_pred CCCCCeEEEcCCC----CCCCH----HHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCce
Q 023798 3 SRASRTLYVGNLP----GDIRE----REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (277)
Q Consensus 3 ~~~~~~l~v~nL~----~~~t~----~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~ 74 (277)
+.|.-||+|.-.+ .++-+ .+|.+.|.+||+|..+++.. +.+||+|.+.++|.+|+. |||..+.|+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~-----d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE-----DKMWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS-----SSEEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec-----CCEEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 4577888887766 23444 67899999999999999974 459999999999999999 9999999999
Q ss_pred EEEEEccCCC
Q 023798 75 LRVELAHGGR 84 (277)
Q Consensus 75 l~v~~a~~~~ 84 (277)
|+|+++.+.-
T Consensus 78 LkV~lkt~dW 87 (91)
T 2dnr_A 78 ITIALKSPSG 87 (91)
T ss_dssp EEEEECCCSS
T ss_pred EEEEeCCCCc
Confidence 9999987543
No 366
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=2.8e-11 Score=85.28 Aligned_cols=74 Identities=18% Similarity=0.231 Sum_probs=61.0
Q ss_pred CCccceEEccCCCCCCC-----------HHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceecc
Q 023798 105 RRSEYRVLVTGLPSSAS-----------WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~-----------~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g 173 (277)
..+..+|+|.||..... +++|+++|.+||.|..+.+......+||||+|.+.++|++|+..|||..++|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34567999999944332 5899999999999999977544567899999999999999999999999999
Q ss_pred ceeee
Q 023798 174 AFSRA 178 (277)
Q Consensus 174 ~~~~~ 178 (277)
+.+.+
T Consensus 92 r~l~v 96 (112)
T 2dit_A 92 RQITA 96 (112)
T ss_dssp EECEE
T ss_pred cEEEE
Confidence 54433
No 367
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.28 E-value=5.8e-11 Score=91.92 Aligned_cols=71 Identities=17% Similarity=0.272 Sum_probs=61.8
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCC---CCEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
...+|||+|||+.+++++|+++|++||.|..+.+..+.. .|||||+|.+.++|++|++.++ ..++|+.+.+
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V 181 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLI 181 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEE
Confidence 457999999999999999999999999999999998654 3699999999999999998665 5899965443
No 368
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.28 E-value=7e-12 Score=99.42 Aligned_cols=65 Identities=14% Similarity=0.248 Sum_probs=60.1
Q ss_pred CCccceEEccCCCCCC---------CHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCcee
Q 023798 105 RRSEYRVLVTGLPSSA---------SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEF 171 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~---------~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~ 171 (277)
.....+|||+||+..+ ++++|+++|.+||.|..|.++.. .+||||+|.+.++|+.|++.|+|..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~--kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES--KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC--CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4467899999999998 79999999999999999999864 57999999999999999999999999
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.19 E-value=3.1e-11 Score=100.78 Aligned_cols=66 Identities=17% Similarity=0.163 Sum_probs=58.9
Q ss_pred CCccceEEccC--CCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceec
Q 023798 105 RRSEYRVLVTG--LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR 172 (277)
Q Consensus 105 ~~~~~~l~v~~--l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~ 172 (277)
..+..+|||+| |+..+++++|+++|++||+|..+.+.. .++||||+|.+.++|++|++.|||.++.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 45667999998 578999999999999999999887754 5689999999999999999999999884
No 370
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.18 E-value=6.8e-11 Score=82.05 Aligned_cols=74 Identities=18% Similarity=0.188 Sum_probs=60.6
Q ss_pred ccceEEccCC--CCCCC--------HHHHHHHHhhcCceeEEEEEecC------CCCEEEEEEcChhhHHHHHHHcCCce
Q 023798 107 SEYRVLVTGL--PSSAS--------WQDLKDHMRRAGDVCFSQVFRDG------SGTTGIVDYTNYDDMKHAIKKLDDSE 170 (277)
Q Consensus 107 ~~~~l~v~~l--~~~~~--------~~~l~~~f~~~g~i~~~~~~~~~------~~~~afv~f~~~~~a~~a~~~l~g~~ 170 (277)
+...|.|.|+ |.++. +++|+++|++||.|..+.++.+. ..|+|||+|.+.++|++|++.|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3457888886 33332 47899999999999999998774 35799999999999999999999999
Q ss_pred eccceeeeEE
Q 023798 171 FRNAFSRAYV 180 (277)
Q Consensus 171 ~~g~~~~~~i 180 (277)
++|+.+.+..
T Consensus 84 f~GR~i~v~~ 93 (105)
T 3v4m_A 84 FANRVVVTKY 93 (105)
T ss_dssp ETTEECEEEE
T ss_pred eCCCEEEEEE
Confidence 9997665543
No 371
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.16 E-value=1.1e-10 Score=82.52 Aligned_cols=74 Identities=14% Similarity=0.194 Sum_probs=61.3
Q ss_pred ccceEEccCCCC--C---CCHHHHHHHHhhcCceeEEEEEecCCC--------CEEEEEEcChhhHHHHHHHcCCceecc
Q 023798 107 SEYRVLVTGLPS--S---ASWQDLKDHMRRAGDVCFSQVFRDGSG--------TTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (277)
Q Consensus 107 ~~~~l~v~~l~~--~---~~~~~l~~~f~~~g~i~~~~~~~~~~~--------~~afv~f~~~~~a~~a~~~l~g~~~~g 173 (277)
+..+|+|.|+-. + -.+++|++.|++||.|..+.|+.+..+ |++||+|.+.++|++|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 456888888732 2 247899999999999999999987532 699999999999999999999999999
Q ss_pred ceeeeEE
Q 023798 174 AFSRAYV 180 (277)
Q Consensus 174 ~~~~~~i 180 (277)
+.+.+..
T Consensus 99 R~i~v~~ 105 (118)
T 3ue2_A 99 RKVVAEV 105 (118)
T ss_dssp EECEEEE
T ss_pred cEEEEEE
Confidence 7665544
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.16 E-value=1.8e-10 Score=80.87 Aligned_cols=75 Identities=12% Similarity=0.080 Sum_probs=61.0
Q ss_pred ccceEEccCCCCCC----------CHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 107 SEYRVLVTGLPSSA----------SWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 107 ~~~~l~v~~l~~~~----------~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
+...|.+.|+-... .+++|+++|++||.|..+.+..+...|++||+|.+.++|++|++.|||..++|+.+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34567777753211 24688999999999999999888778899999999999999999999999999766
Q ss_pred eeEEE
Q 023798 177 RAYVR 181 (277)
Q Consensus 177 ~~~i~ 181 (277)
.+...
T Consensus 86 ~v~~~ 90 (114)
T 3s6e_A 86 TAAYV 90 (114)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55443
No 373
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=6.3e-11 Score=78.45 Aligned_cols=73 Identities=16% Similarity=0.236 Sum_probs=62.0
Q ss_pred CCCCCeEEEcCCCCC-----CCH----HHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCc
Q 023798 3 SRASRTLYVGNLPGD-----IRE----REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH 73 (277)
Q Consensus 3 ~~~~~~l~v~nL~~~-----~t~----~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~ 73 (277)
+.|.-||+|.-++.. +-+ .+|.+.|..||+|..+++..+ -+||+|.+.++|.+||. |||..+.|+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-----~~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-----QMLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-----EEEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-----cEEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 457889999877643 333 568999999999999999844 39999999999999999 999999999
Q ss_pred eEEEEEcc
Q 023798 74 RLRVELAH 81 (277)
Q Consensus 74 ~l~v~~a~ 81 (277)
.|+|.+..
T Consensus 86 ~L~V~~k~ 93 (95)
T 1ufw_A 86 AVKISGPS 93 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEeccC
Confidence 99998753
No 374
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.11 E-value=3.5e-11 Score=83.41 Aligned_cols=66 Identities=21% Similarity=0.256 Sum_probs=54.7
Q ss_pred ccCCCCCCCHHHHHHHH------------hhcCceeEEEEEecCC---CCEEEEEEcChhhHHHHHHHcCCceeccceee
Q 023798 113 VTGLPSSASWQDLKDHM------------RRAGDVCFSQVFRDGS---GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSR 177 (277)
Q Consensus 113 v~~l~~~~~~~~l~~~f------------~~~g~i~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~ 177 (277)
+.||+..+++++|+++| ++||.|..+.++.+.. .|||||+|.+.++|++|+..|||..++|+.+.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45677777777666655 9999999999988753 57999999999999999999999999996554
Q ss_pred e
Q 023798 178 A 178 (277)
Q Consensus 178 ~ 178 (277)
+
T Consensus 100 v 100 (104)
T 1jmt_A 100 A 100 (104)
T ss_dssp E
T ss_pred E
Confidence 3
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=3e-10 Score=79.88 Aligned_cols=76 Identities=14% Similarity=0.202 Sum_probs=65.5
Q ss_pred CCCCccceEEccCCCCC-CCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcC-hhhHHHHHHHcC--Cceeccceeee
Q 023798 103 VSRRSEYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTN-YDDMKHAIKKLD--DSEFRNAFSRA 178 (277)
Q Consensus 103 ~~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~-~~~a~~a~~~l~--g~~~~g~~~~~ 178 (277)
....+++.|+|+||+.. ++.++|+++|++||+|.+|.+..+.. .|||.|.+ ..+|..|+..++ +..|+|...+.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ 90 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTW 90 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEE
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEE
Confidence 44567899999999999 99999999999999999999988866 79999999 899999999994 67788855444
Q ss_pred EE
Q 023798 179 YV 180 (277)
Q Consensus 179 ~i 180 (277)
.+
T Consensus 91 ev 92 (121)
T 1owx_A 91 EV 92 (121)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 376
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=3.4e-09 Score=72.50 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=46.7
Q ss_pred CCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceecc
Q 023798 117 PSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (277)
Q Consensus 117 ~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g 173 (277)
+..+++++|+++|.+||.|..|.++ ....+||||+|.+.++|+.|++.+++ +.|
T Consensus 26 ~~~~te~~L~~~F~~~G~V~~v~i~-~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g 79 (100)
T 2d9o_A 26 KGGYSKDVLLRLLQKYGEVLNLVLS-SKKPGTAVVEFATVKAAELAVQNEVG--LVD 79 (100)
T ss_dssp CCSCCHHHHHHHHHTTSCEEEEEEE-SSSSSEEEEEESCHHHHHHHHHTCCB--CSS
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEc-cCCCCEEEEEECCHHHHHHHHHhcCC--CCC
Confidence 3568999999999999999999988 35667999999999999999998655 445
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.96 E-value=1.2e-09 Score=86.57 Aligned_cols=76 Identities=25% Similarity=0.313 Sum_probs=63.0
Q ss_pred CCeEEEcCCCC-----CCCHHHHHHHHhccCceeEEEeec-------CCCCCceEEEEEcChHHHHHHHHhcCCCccCCc
Q 023798 6 SRTLYVGNLPG-----DIREREVEDLFYKYGPIAHIDLKI-------PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH 73 (277)
Q Consensus 6 ~~~l~v~nL~~-----~~t~~~L~~~F~~~G~v~~v~~~~-------~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~ 73 (277)
+..+.+.|+-. .-.+++|.+.|++||.|..+.+.. ++.++|++||+|.+.++|.+|+..|||..|+|+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 44555555522 245678999999999999999952 236789999999999999999999999999999
Q ss_pred eEEEEEcc
Q 023798 74 RLRVELAH 81 (277)
Q Consensus 74 ~l~v~~a~ 81 (277)
.|.|.++.
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99999975
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=6.4e-09 Score=68.51 Aligned_cols=69 Identities=17% Similarity=0.139 Sum_probs=54.8
Q ss_pred ccceEEccCCC----CCCCH----HHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccceeee
Q 023798 107 SEYRVLVTGLP----SSASW----QDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRA 178 (277)
Q Consensus 107 ~~~~l~v~~l~----~~~~~----~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 178 (277)
++.+|+|.-.+ .++.. .+|.+.|.+||+|..+.+..+ .+||+|.+.++|.+|++ |||..+.|+.+++
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d----~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED----KMWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS----SEEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC----CEEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 34566666554 22333 678999999999999999988 48999999999999998 9999999965544
Q ss_pred EE
Q 023798 179 YV 180 (277)
Q Consensus 179 ~i 180 (277)
.+
T Consensus 81 ~l 82 (91)
T 2dnr_A 81 AL 82 (91)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.67 E-value=1.4e-07 Score=63.69 Aligned_cols=72 Identities=15% Similarity=0.147 Sum_probs=65.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcc-----CceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEE
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKY-----GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~-----G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 79 (277)
..++|-|-|||-.+++..|+.|++++ |.|..|.+..+ -+=|+|+|.+...|.+|.=.|+|.+|.|+.|.|.-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD---H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD---FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT---TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC---CCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 37899999999999999999999999 99999999644 45799999999999999877999999999999854
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=4.5e-08 Score=64.82 Aligned_cols=68 Identities=9% Similarity=0.152 Sum_probs=55.7
Q ss_pred CccceEEccCCCCC-----CCH----HHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 106 RSEYRVLVTGLPSS-----ASW----QDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 106 ~~~~~l~v~~l~~~-----~~~----~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
+++.+|+|.-++.. +.. .+|.+.|.+||+|..+.+..+. +||+|.+.++|.+|++ |||.+++|+.+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~Gr~L 87 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVKGRAV 87 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEETTEEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeCCeEE
Confidence 34568888877632 222 5689999999999999999884 9999999999999999 99999999554
Q ss_pred ee
Q 023798 177 RA 178 (277)
Q Consensus 177 ~~ 178 (277)
++
T Consensus 88 ~V 89 (95)
T 1ufw_A 88 KI 89 (95)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 381
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=7e-07 Score=59.82 Aligned_cols=88 Identities=23% Similarity=0.342 Sum_probs=72.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhc-c----CceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEE
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYK-Y----GPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~-~----G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 79 (277)
..++|.|.|||+.+.++.|.-+|++ - |+|..|... .+-|+|+|.+.+.|+..+. ...+.|.+..|.|..
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~-----~~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL-----GCGGVLTFREPADAERVLA-QADHELHGAQLSLRP 80 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE-----TTEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc-----CCcEEEEEcChHHHHHHhc-CCcceecCeEEEEEc
Confidence 4689999999999999999999997 2 689988885 2689999999999999999 447788899999977
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCC
Q 023798 80 AHGGRGRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSAS 121 (277)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~ 121 (277)
.... ....+++.+|++.++
T Consensus 81 ~~~~-----------------------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 81 APPR-----------------------APARLLLQGLPPGTS 99 (104)
T ss_dssp CCCC-----------------------CCCCCCCCSCCCCCC
T ss_pred CCCC-----------------------CcceEeeecCCCCCC
Confidence 5322 235788888888764
No 382
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.46 E-value=1.7e-06 Score=58.26 Aligned_cols=76 Identities=20% Similarity=0.207 Sum_probs=64.0
Q ss_pred CCCCeEEEcCCCCCC-CH----HHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEE
Q 023798 4 RASRTLYVGNLPGDI-RE----REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVE 78 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~-t~----~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 78 (277)
.-+++|+|+||+..+ .. +.++++|..|+++..+....+ -.-..|.|.++++|.+|-..||+..|.|+.|+|.
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS---FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS---FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT---TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc---ceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 457899999998864 32 467899999999888877632 3357899999999999999999999999999999
Q ss_pred EccC
Q 023798 79 LAHG 82 (277)
Q Consensus 79 ~a~~ 82 (277)
++..
T Consensus 80 Fgq~ 83 (104)
T 1wey_A 80 FAQT 83 (104)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9973
No 383
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.38 E-value=8.6e-07 Score=69.97 Aligned_cols=61 Identities=15% Similarity=0.153 Sum_probs=52.5
Q ss_pred CCHHHHHHHHhhcCceeEEEEEecCC--------CCEEEEEEcChhhHHHHHHHcCCceeccceeeeEE
Q 023798 120 ASWQDLKDHMRRAGDVCFSQVFRDGS--------GTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (277)
Q Consensus 120 ~~~~~l~~~f~~~g~i~~~~~~~~~~--------~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 180 (277)
-.+++|.+.|.+||.|..+.+..+.. .|++||+|.+.++|++|+..|||..++|+.+.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~ 209 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEV 209 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEE
Confidence 35789999999999999999986533 26999999999999999999999999997765544
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.22 E-value=8.3e-06 Score=55.10 Aligned_cols=67 Identities=13% Similarity=0.112 Sum_probs=60.7
Q ss_pred cceEEccCCCCCCCHHHHHHHHhhc-----CceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 108 EYRVLVTGLPSSASWQDLKDHMRRA-----GDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 108 ~~~l~v~~l~~~~~~~~l~~~f~~~-----g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
..+|-+-|||..+++..|+.+..++ |.|..+.+..+.. -|+|+|.+...|-+|.-.|+|.++.|+.+
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~--GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN--GAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT--EEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC--ceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 4688899999999999999999999 9999998887765 68999999999999999999999998543
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.22 E-value=9.5e-06 Score=53.74 Aligned_cols=76 Identities=17% Similarity=0.198 Sum_probs=60.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec-----CCCCCceEEEEEcChHHHHHHHHhcCCCccCCc-----eEE
Q 023798 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI-----PPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH-----RLR 76 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~-----~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~-----~l~ 76 (277)
++|.|.+||+.+|++++.+.++.+..+....+.. ......-|||.|.+.+++......++|..|.+. +..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 5789999999999999999999998887776632 123346799999999999999999999987432 335
Q ss_pred EEEccC
Q 023798 77 VELAHG 82 (277)
Q Consensus 77 v~~a~~ 82 (277)
|++|..
T Consensus 82 VE~AP~ 87 (91)
T 1uw4_A 82 VEFAPF 87 (91)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 666643
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.05 E-value=1.3e-05 Score=52.93 Aligned_cols=55 Identities=20% Similarity=0.344 Sum_probs=45.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcC
Q 023798 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (277)
Q Consensus 6 ~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 66 (277)
.+.++| ++|+.+...||.++|+.||.|.--.|. -..|||.|.+++.|..|+..++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wid-----DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID-----DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEE-----TTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEc-----CCeEEEEecCHHHHHHHHHhcc
Confidence 567788 999999999999999999965544443 2389999999999999999763
No 387
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.93 E-value=1.3e-05 Score=53.12 Aligned_cols=54 Identities=20% Similarity=0.344 Sum_probs=44.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcC
Q 023798 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 66 (277)
+.++| ++|+.+...||.++|+.||.|.--.|. -..|||.|.+++.|..|+..++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~Wid-----DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID-----DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEE-----TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEEEc-----CCeEEEEecCHHHHHHHHHhcc
Confidence 46777 999999999999999999954433333 2389999999999999999764
No 388
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.85 E-value=6.9e-05 Score=51.90 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=58.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCC-ceEEEEEc
Q 023798 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDG-HRLRVELA 80 (277)
Q Consensus 6 ~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g-~~l~v~~a 80 (277)
.+-|.|-+.|+.. ...|...|++||+|...... ....+-.|.|.+..+|++||. .||..|+| ..|-|.++
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~---~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS---NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC---SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC---CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 5678888998885 67888999999999988872 335699999999999999999 89999985 55666665
No 389
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.75 E-value=9e-05 Score=49.32 Aligned_cols=76 Identities=20% Similarity=0.251 Sum_probs=56.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeec---C--CCCCceEEEEEcChHHHHHHHHhcCCCccCCc-----eE
Q 023798 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKI---P--PRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH-----RL 75 (277)
Q Consensus 6 ~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~--~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~-----~l 75 (277)
+-+|.|..||+.+|++++.+.++.+-++....+.. + .....-|||.|.+.+++......++|..|-+. +.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 46799999999999999988888765654433321 1 12235799999999999999999999887432 45
Q ss_pred EEEEcc
Q 023798 76 RVELAH 81 (277)
Q Consensus 76 ~v~~a~ 81 (277)
.|++|.
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 566664
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.51 E-value=0.00089 Score=44.23 Aligned_cols=67 Identities=15% Similarity=0.361 Sum_probs=56.8
Q ss_pred ceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC------CEEEEEEcChhhHHHHHHHcCCceeccce
Q 023798 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG------TTGIVDYTNYDDMKHAIKKLDDSEFRNAF 175 (277)
Q Consensus 109 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~------~~afv~f~~~~~a~~a~~~l~g~~~~g~~ 175 (277)
++|.|.+||+.+|++++.+.+.....+........... .-|+|.|.+.+++..-.+.++|..+-+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~k 74 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNK 74 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCC
Confidence 57899999999999999999999988777666655322 26999999999999999999999887644
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.45 E-value=0.00061 Score=45.05 Aligned_cols=55 Identities=16% Similarity=0.229 Sum_probs=44.4
Q ss_pred cceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcC
Q 023798 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD 167 (277)
Q Consensus 108 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~ 167 (277)
...++| +.|+++...+|.++|+.||.|.--+ +.|. .|||.|.+.+.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~W-idDT---sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISW-IDDT---SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEE-EETT---EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEE-EcCC---eEEEEecCHHHHHHHHHhcc
Confidence 345555 9999999999999999999554433 3443 89999999999999999764
No 392
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.41 E-value=0.0005 Score=46.26 Aligned_cols=70 Identities=14% Similarity=0.119 Sum_probs=57.7
Q ss_pred ceEEccCCCCCC-C----HHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceeccceeeeEE
Q 023798 109 YRVLVTGLPSSA-S----WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYV 180 (277)
Q Consensus 109 ~~l~v~~l~~~~-~----~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 180 (277)
++|+|+||+.++ . ++.++++|..|+++......+.-. -..|.|.+.++|.+|...||+..+.|...+.+.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR--Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YF 80 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK--RVRINFSNPLSAADARLRLHKTEFLGKEMKLYF 80 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT--EEEEECSSTTHHHHHHHTSTTSEETTEECEEEC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce--EEEEEeCChHHHHHHHHHhccceecCceeEEEe
Confidence 689999998866 2 367899999999988877776643 468999999999999999999999997554443
No 393
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.28 E-value=0.0014 Score=45.37 Aligned_cols=65 Identities=15% Similarity=0.208 Sum_probs=54.2
Q ss_pred CCccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceecc
Q 023798 105 RRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (277)
Q Consensus 105 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g 173 (277)
.....-|.|-+.|+.. ...|..+|.+||+|..... .....+-.|.|.+..+|++|+. .||..++|
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g 85 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKALS-KDGRIFGE 85 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHHT-TTTCEETT
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHHH-hCCeEecC
Confidence 3456788899998884 6788899999999998776 3344599999999999999999 69999875
No 394
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.19 E-value=0.0018 Score=43.40 Aligned_cols=62 Identities=21% Similarity=0.278 Sum_probs=49.7
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhh-----cCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCCceecc
Q 023798 107 SEYRVLVTGLPSSASWQDLKDHMRR-----AGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRN 173 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l~~~f~~-----~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~g 173 (277)
...+|.|.|||+.+.++.|.-+|+. -|.|..+.... ..|+|+|.+.+.|+..+++ ....+++
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k-~~H~L~~ 73 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ-ADHELHG 73 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC-SCCBSSS
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC-CcceecC
Confidence 3469999999999999999999987 24777777755 4899999999999999984 2444555
No 395
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.16 E-value=0.00056 Score=48.04 Aligned_cols=75 Identities=20% Similarity=0.275 Sum_probs=54.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEE-eec---------------CC-CCCceEEEEEcChHHHHHHHHhcCC
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHID-LKI---------------PP-RPPGYAFVEFEEARDAEDAIRGRDG 67 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~-~~~---------------~~-~~~g~afV~f~~~~~A~~a~~~l~g 67 (277)
...-|.|-+.|+.. ...|.+.|++||.|..-. +.. .. ...++..|+|.+..+|.+||. .||
T Consensus 6 ~e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 44567777886655 466778999999987621 110 00 124678999999999999999 899
Q ss_pred CccCCceEEEEEcc
Q 023798 68 YDFDGHRLRVELAH 81 (277)
Q Consensus 68 ~~~~g~~l~v~~a~ 81 (277)
..|.|.-|-|.+..
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999877777763
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.07 E-value=0.0014 Score=43.53 Aligned_cols=54 Identities=17% Similarity=0.197 Sum_probs=44.1
Q ss_pred ceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcC
Q 023798 109 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD 167 (277)
Q Consensus 109 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~ 167 (277)
..++| +.|+++...+|.++|+.||.| .|..+.|. .|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT---sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT---EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 34555 999999999999999999944 34444443 89999999999999999764
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.80 E-value=0.00077 Score=58.30 Aligned_cols=57 Identities=26% Similarity=0.346 Sum_probs=43.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHh
Q 023798 5 ASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRG 64 (277)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~ 64 (277)
+.++|||. .|..+++.+|.+.|++||+|..+.+..+. .-||.|||.+.+++..++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--SEEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--CeEEEEEeCCHHHHHHHHhc
Confidence 35789996 79999999999999999999999986432 35999999999999988763
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.43 E-value=0.005 Score=40.89 Aligned_cols=69 Identities=16% Similarity=0.277 Sum_probs=52.3
Q ss_pred cceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC------CEEEEEEcChhhHHHHHHHcCCceecccee
Q 023798 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSG------TTGIVDYTNYDDMKHAIKKLDDSEFRNAFS 176 (277)
Q Consensus 108 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~------~~afv~f~~~~~a~~a~~~l~g~~~~g~~~ 176 (277)
..+|.|..||+.+|++++.+.+...-++........... .-|+|.|.+.++...-.+.++|..+-+...
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg 83 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKG 83 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCC
Confidence 358999999999999999988887655433222222111 269999999999999999999998876543
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.32 E-value=0.023 Score=39.91 Aligned_cols=68 Identities=16% Similarity=0.203 Sum_probs=49.1
Q ss_pred cceEEccCCCCCCCHHHHHHHHhhcCceeEE-EEE--------------ecC---CCCEEEEEEcChhhHHHHHHHcCCc
Q 023798 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVF--------------RDG---SGTTGIVDYTNYDDMKHAIKKLDDS 169 (277)
Q Consensus 108 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~-~~~--------------~~~---~~~~afv~f~~~~~a~~a~~~l~g~ 169 (277)
..-|.|-+.|+.. ...+-+.|++||.|..- ... .-+ ...+..|.|.+..+|++|+. .||.
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 4577888886654 45677889999998762 111 001 23488999999999999998 8999
Q ss_pred eeccceee
Q 023798 170 EFRNAFSR 177 (277)
Q Consensus 170 ~~~g~~~~ 177 (277)
.++|..+.
T Consensus 85 ii~G~mIG 92 (132)
T 3p3d_A 85 VFNGVLLG 92 (132)
T ss_dssp EETTEECE
T ss_pred EeCcEEEE
Confidence 99985443
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.37 E-value=0.024 Score=49.05 Aligned_cols=56 Identities=13% Similarity=0.218 Sum_probs=42.0
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHH
Q 023798 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIK 164 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~ 164 (277)
....|+|. .|..+++.+|.++|++||.|..+.+..+. +.||.|+|.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-SEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-CeEEEEEeCCHHHHHHHHh
Confidence 34678887 68889999999999999999999888643 4599999999999887765
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.14 E-value=0.1 Score=46.02 Aligned_cols=55 Identities=20% Similarity=0.334 Sum_probs=44.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcC
Q 023798 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66 (277)
Q Consensus 6 ~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 66 (277)
+..++|+ +|+.+...+|.++|+.||.|.-..+. ...|||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wid-----dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWID-----DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEECS-----SSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEEc-----CCeEEEEECCHHHHHHHHHHHH
Confidence 3577776 99999999999999999965433332 3479999999999999999875
No 402
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=92.52 E-value=0.62 Score=29.21 Aligned_cols=68 Identities=19% Similarity=0.262 Sum_probs=45.8
Q ss_pred eEEEcCC-CCCCCHHHHHHHHhccC-----ceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEEcc
Q 023798 8 TLYVGNL-PGDIREREVEDLFYKYG-----PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAH 81 (277)
Q Consensus 8 ~l~v~nL-~~~~t~~~L~~~F~~~G-----~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~a~ 81 (277)
+|||..- ...+...+|..++..-+ .|-.|.+. ..|.||+... +.|..++..|++..+.|+.+.|+.+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-----d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-----DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-----SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-----CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 5666422 33478888888887554 35666664 4599999987 67888999999999999999988763
No 403
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.08 E-value=2.3 Score=37.42 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=43.9
Q ss_pred cceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHcCC
Q 023798 108 EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDD 168 (277)
Q Consensus 108 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g 168 (277)
...++|+ +|..+...+|.+.|+.||.+. |..+.+ ..|||.|.+.+.|..+++.+..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~-V~widd---t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQ-ISWIDD---TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCE-EEECSS---SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEE-EEEEcC---CeEEEEECCHHHHHHHHHHHHh
Confidence 4456665 888999999999999999543 333333 2799999999999999998853
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=79.52 E-value=9.9 Score=24.38 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=52.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCceEEEEE
Q 023798 4 RASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL 79 (277)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 79 (277)
..+|-|-|-|||..+-..++.-.....|---.|... -|.|.|.|.+.++...|+..|-+. ....|.++.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi-----dgqamirfqnsdeqrlaiqkllnh--nnnklqiei 78 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-----DGQAMIRFQNSDEQRLAIQKLLNH--NNNKLQIEI 78 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-----SSCEEEEESSHHHHHHHHHHHEET--TTTEEEEEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-----cCeeEEEecCChHHHHHHHHHHhc--CCCEEEEEE
Confidence 457888899999999999988778888866667665 578999999999999998865322 234555544
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=70.99 E-value=7 Score=28.71 Aligned_cols=50 Identities=22% Similarity=0.230 Sum_probs=36.0
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHH--hccCceeEEEeecCCCCCceEEEEEcChHH
Q 023798 8 TLYVGNLPG-D--------IREREVEDLF--YKYGPIAHIDLKIPPRPPGYAFVEFEEARD 57 (277)
Q Consensus 8 ~l~v~nL~~-~--------~t~~~L~~~F--~~~G~v~~v~~~~~~~~~g~afV~f~~~~~ 57 (277)
++.|-|+|. . ....+|.+.| ..|.++.-..+.......|+|.|+|...-.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWN 74 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChH
Confidence 455678887 2 4567899977 899988766664444457899999997543
No 406
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=66.20 E-value=23 Score=22.67 Aligned_cols=56 Identities=16% Similarity=0.322 Sum_probs=46.1
Q ss_pred ccceEEccCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCEEEEEEcChhhHHHHHHHc
Q 023798 107 SEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL 166 (277)
Q Consensus 107 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l 166 (277)
..+-+.|-|+|..+-..++.-...-.|---.|..+.. .|.|.|.+.++..-|+.+|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyidg----qamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDG----QAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSS----CEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeecC----eeEEEecCChHHHHHHHHH
Confidence 4578889999999999888888887786666766554 6899999999999998875
No 407
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=64.19 E-value=1.2 Score=32.04 Aligned_cols=28 Identities=14% Similarity=0.368 Sum_probs=19.4
Q ss_pred HHHHHHHhccCceeEEEeecCCCCCceEEEEEc
Q 023798 21 REVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFE 53 (277)
Q Consensus 21 ~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~ 53 (277)
+|+.++|...|.|+.+... +||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~-----kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVR-----MGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETT-----TTEEEEEEE
T ss_pred CcccccccceeEEEEEECC-----CCeeEEeeC
Confidence 4666788888888876654 899999986
No 408
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=61.31 E-value=30 Score=22.32 Aligned_cols=33 Identities=30% Similarity=0.374 Sum_probs=25.0
Q ss_pred eeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCC
Q 023798 33 IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDG 67 (277)
Q Consensus 33 v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g 67 (277)
|..+.++. ..+||.||++...+++..++..+.|
T Consensus 40 i~~v~vP~--~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 40 VYSILASE--SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp EEEEEECT--TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEEec--ccCCEEEEEEecchhHHHHHHCCCC
Confidence 55555542 4799999999999988888886654
No 409
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.98 E-value=12 Score=22.47 Aligned_cols=20 Identities=30% Similarity=0.567 Sum_probs=13.6
Q ss_pred CceeEEEeecCCCCCceEEEEEcCh
Q 023798 31 GPIAHIDLKIPPRPPGYAFVEFEEA 55 (277)
Q Consensus 31 G~v~~v~~~~~~~~~g~afV~f~~~ 55 (277)
|.|+.|... +..|||.|.+.
T Consensus 28 GtV~kV~~~-----~~~ClV~FeD~ 47 (68)
T 2e5p_A 28 GTIKKVDSA-----REVCLVQFEDD 47 (68)
T ss_dssp EEEEEEETT-----TTEEEEEETTT
T ss_pred eEEEEEecC-----CcEEEEEEccC
Confidence 555555432 67899999973
No 410
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=42.99 E-value=33 Score=29.35 Aligned_cols=60 Identities=28% Similarity=0.368 Sum_probs=41.9
Q ss_pred eEEEcCCCCCCC----HHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCce
Q 023798 8 TLYVGNLPGDIR----EREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHR 74 (277)
Q Consensus 8 ~l~v~nL~~~~t----~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~ 74 (277)
--+||||..-.. ...+.++..+||+|..+.+- +.-+|...+++.|+.++. -++..+.+++
T Consensus 16 lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~~k~il~-~~~~~f~~rp 79 (494)
T 3swz_A 16 LPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG------TKTTVIVGHHQLAKEVLI-KKGKDFSGRP 79 (494)
T ss_dssp CCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET------TEEEEEECSHHHHHHHHT-TTTTTTBBCC
T ss_pred CCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC------CCCEEEECCHHHHHHHHH-hCcHhhCCCC
Confidence 347888864321 35677888899999888872 345778889999999987 3555555543
No 411
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=37.67 E-value=18 Score=22.39 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=13.3
Q ss_pred CceeEEEeecCCCCCceEEEEEcCh
Q 023798 31 GPIAHIDLKIPPRPPGYAFVEFEEA 55 (277)
Q Consensus 31 G~v~~v~~~~~~~~~g~afV~f~~~ 55 (277)
|.|..|.. .+..|||.|.+.
T Consensus 45 GTI~kV~~-----~~e~ClV~F~D~ 64 (79)
T 2m0o_A 45 GTIKKVDS-----AREVCLVQFEDD 64 (79)
T ss_dssp EEEEEEET-----TTTEEEEEETTS
T ss_pred EEEEEecc-----CCCEEEEEEcCC
Confidence 45554443 267899999874
No 412
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=37.48 E-value=20 Score=21.61 Aligned_cols=12 Identities=25% Similarity=0.459 Sum_probs=9.8
Q ss_pred CCceEEEEEcCh
Q 023798 44 PPGYAFVEFEEA 55 (277)
Q Consensus 44 ~~g~afV~f~~~ 55 (277)
..+.|+|.|.+-
T Consensus 40 ~~gtC~V~F~D~ 51 (66)
T 2eqj_A 40 LKQSCFIIFEDS 51 (66)
T ss_dssp TTTEEEEEETTT
T ss_pred CCcEEEEEEccC
Confidence 368999999873
No 413
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=36.60 E-value=30 Score=27.48 Aligned_cols=29 Identities=34% Similarity=0.453 Sum_probs=23.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCceeEE
Q 023798 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHI 36 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v 36 (277)
..+.|+|||++++..-|..++.. +.+..+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~ 139 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARL 139 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEE
Confidence 46789999999999999999987 555433
No 414
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=35.61 E-value=25 Score=29.88 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=36.5
Q ss_pred EEcCCCCC---CCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCccCCc
Q 023798 10 YVGNLPGD---IREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGH 73 (277)
Q Consensus 10 ~v~nL~~~---~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~ 73 (277)
+||||..- -....+.++..+||+|..+.+- +.-+|...+++.++.++. -++..+.++
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~i~~vl~-~~~~~f~~r 79 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLA------WTPVVVLNGLAAVREALV-THGEDTADR 79 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEET------TEEEEEEEHHHHHHHHHT-TTGGGSCBC
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEEC------CeeEEEECCHHHHHHHHH-hCChhhcCC
Confidence 46776432 2234577888899999888772 233566778888888875 344444433
No 415
>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.58.42.1
Probab=34.12 E-value=1.1e+02 Score=20.61 Aligned_cols=24 Identities=33% Similarity=0.753 Sum_probs=19.7
Q ss_pred CCceEEEEEcChH-----HHHHHHHhcCC
Q 023798 44 PPGYAFVEFEEAR-----DAEDAIRGRDG 67 (277)
Q Consensus 44 ~~g~afV~f~~~~-----~A~~a~~~l~g 67 (277)
.+||.||++.-.+ ++...+....|
T Consensus 61 fPGYVFV~~~~~~~~~~~~~~~~vr~t~g 89 (119)
T 1nz8_A 61 FPGYLFIQMDLGDEEEPNEAWEVVRGTPG 89 (119)
T ss_dssp STTEEEEEECCCSSSSCCHHHHHHHHSTT
T ss_pred CCCEEEEEeeccccccchhHHHHHHcCCC
Confidence 6899999999877 77778876665
No 416
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=34.05 E-value=17 Score=29.06 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=24.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCceeEEEe
Q 023798 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDL 38 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~ 38 (277)
..+.|+|||++++..-|..++.....+..+.+
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~ 146 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHF 146 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEE
Confidence 46789999999999999999986555554443
No 417
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=33.70 E-value=33 Score=31.19 Aligned_cols=54 Identities=19% Similarity=0.272 Sum_probs=40.1
Q ss_pred cCCCCCCCHHHHHHHHh----ccCceeEEEeecC--CCCCceEEEEEcChHHHHHHHHhc
Q 023798 12 GNLPGDIREREVEDLFY----KYGPIAHIDLKIP--PRPPGYAFVEFEEARDAEDAIRGR 65 (277)
Q Consensus 12 ~nL~~~~t~~~L~~~F~----~~G~v~~v~~~~~--~~~~g~afV~f~~~~~A~~a~~~l 65 (277)
+..+.+.+--||..+|- .+|-|+.+.|... +....++++.|.+.++|..++..+
T Consensus 349 ~~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 349 CQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 34566666668888883 7888999888432 333557889999999999988765
No 418
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=33.57 E-value=92 Score=19.76 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=37.2
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-cC-ceeEEEeecCCCCCceEEEEEcChHHHHHHHH
Q 023798 9 LYVGNLPGDIREREVEDLFYK-YG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (277)
Q Consensus 9 l~v~nL~~~~t~~~L~~~F~~-~G-~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~ 63 (277)
.|+-.+...++..+|++.++. || .|..|.........--|||.+....+|.....
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHHHH
Confidence 344467889999999998885 44 45555554333333369999988777666544
No 419
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=33.38 E-value=53 Score=21.86 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=26.9
Q ss_pred eeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCc
Q 023798 33 IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYD 69 (277)
Q Consensus 33 v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~ 69 (277)
|..+..+ ...+||-|||=..+.++..|+..+.+..
T Consensus 41 I~Si~~~--~~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 41 IKSVVAP--EHVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCEEEEC--TTCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred eEEEEec--CCCceEEEEEeCCHHHHHHHHhccccee
Confidence 5555543 3569999999999999999999775543
No 420
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.58 E-value=9.9 Score=22.49 Aligned_cols=12 Identities=25% Similarity=0.437 Sum_probs=9.5
Q ss_pred CCceEEEEEcCh
Q 023798 44 PPGYAFVEFEEA 55 (277)
Q Consensus 44 ~~g~afV~f~~~ 55 (277)
.+..|||.|.+.
T Consensus 34 ~~~~ClV~FeD~ 45 (63)
T 2e5q_A 34 SKQSCLVTFEDN 45 (63)
T ss_dssp TTSEEEEEETTS
T ss_pred CCCEEEEEEccC
Confidence 367899999874
No 421
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=30.26 E-value=79 Score=23.43 Aligned_cols=46 Identities=9% Similarity=-0.065 Sum_probs=30.9
Q ss_pred EEcCCCCCCCHHHH--------HHHHhccCceeEEEeecCCCCCceEEEEEcCh
Q 023798 10 YVGNLPGDIREREV--------EDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEA 55 (277)
Q Consensus 10 ~v~nL~~~~t~~~L--------~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~ 55 (277)
|+=-||..++.++- +++|..+|-+.++.|..++.....|-|-|.+-
T Consensus 74 ~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~~~NpHaHim~t~R 127 (185)
T 2ns6_A 74 VEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGGGENPHCHLMISER 127 (185)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEETTTEEEEEEEECCB
T ss_pred EEEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCCCCCceEEEEEeec
Confidence 34479999998873 44566778888888865333344677766653
No 422
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=28.09 E-value=35 Score=22.24 Aligned_cols=22 Identities=18% Similarity=0.036 Sum_probs=15.7
Q ss_pred EcCCCCCCCHHHHHHHHh-ccCc
Q 023798 11 VGNLPGDIREREVEDLFY-KYGP 32 (277)
Q Consensus 11 v~nL~~~~t~~~L~~~F~-~~G~ 32 (277)
|.+|.+.+|..||...+. ..|.
T Consensus 21 VsGvT~~TTC~DVV~aL~~~~G~ 43 (95)
T 2cs4_A 21 VCGVTEVTTCQEVVIALAQAIGR 43 (95)
T ss_dssp CSSBCSSSCHHHHHHHHHHHHSC
T ss_pred EECCCCCCcHHHHHHHHHhccCC
Confidence 457888999999888554 4453
No 423
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=27.25 E-value=1.7e+02 Score=20.82 Aligned_cols=56 Identities=11% Similarity=0.114 Sum_probs=40.1
Q ss_pred eEEccCCCCCCCHHHHHHHHhh-cC-ceeEEEEEecCCCC-EEEEEEcChhhHHHHHHH
Q 023798 110 RVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSGT-TGIVDYTNYDDMKHAIKK 165 (277)
Q Consensus 110 ~l~v~~l~~~~~~~~l~~~f~~-~g-~i~~~~~~~~~~~~-~afv~f~~~~~a~~a~~~ 165 (277)
..++.......+..+|++.++. |+ .|..+..+.-+.+. -|||.+..-.+|.+....
T Consensus 88 N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 88 NTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLANK 146 (150)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHHh
Confidence 4455556778899999888865 55 56667666665543 799999888888776554
No 424
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=26.60 E-value=29 Score=21.38 Aligned_cols=11 Identities=27% Similarity=0.673 Sum_probs=8.6
Q ss_pred CCceEEEEEcC
Q 023798 44 PPGYAFVEFEE 54 (277)
Q Consensus 44 ~~g~afV~f~~ 54 (277)
.+||+||+-.+
T Consensus 13 ~KGfGFI~~~d 23 (74)
T 2k5n_A 13 DKGFGFIKDEN 23 (74)
T ss_dssp TTTEEEEEESS
T ss_pred CCCeEEEecCC
Confidence 38999998765
No 425
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=26.36 E-value=48 Score=25.85 Aligned_cols=29 Identities=31% Similarity=0.291 Sum_probs=22.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCceeE
Q 023798 7 RTLYVGNLPGDIREREVEDLFYKYGPIAH 35 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~L~~~F~~~G~v~~ 35 (277)
..+.|+|||++++..-|..++.....+..
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~ 119 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIAD 119 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcce
Confidence 35789999999999999888875433433
No 426
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=26.22 E-value=1.7e+02 Score=20.86 Aligned_cols=54 Identities=9% Similarity=0.095 Sum_probs=36.1
Q ss_pred EEcCCCCCCCHHHHHHHHhcc-C-ceeEEEeecCCCCCceEEEEEcChHHHHHHHH
Q 023798 10 YVGNLPGDIREREVEDLFYKY-G-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (277)
Q Consensus 10 ~v~nL~~~~t~~~L~~~F~~~-G-~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~ 63 (277)
|+-.+...++..+|++.++.+ + .|..|.........--|||.+....+|.....
T Consensus 90 ~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAn 145 (150)
T 4a17_R 90 MVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLAN 145 (150)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHH
Confidence 344577889999999888854 4 35555553333333469999988777776544
No 427
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=25.92 E-value=42 Score=26.08 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=23.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCceeEE
Q 023798 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHI 36 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v 36 (277)
..+.|+|||++++..-|..++.....+..+
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~ 125 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLA 125 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceE
Confidence 357899999999999999999865444433
No 428
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=25.41 E-value=48 Score=27.50 Aligned_cols=22 Identities=23% Similarity=0.191 Sum_probs=19.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhc
Q 023798 8 TLYVGNLPGDIREREVEDLFYK 29 (277)
Q Consensus 8 ~l~v~nL~~~~t~~~L~~~F~~ 29 (277)
.++|+|||++++..-|..++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999999988875
No 429
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=25.14 E-value=1.8e+02 Score=20.45 Aligned_cols=56 Identities=20% Similarity=0.179 Sum_probs=40.2
Q ss_pred eEEccCCCCCCCHHHHHHHHhh-cC-ceeEEEEEecCCCC-EEEEEEcChhhHHHHHHH
Q 023798 110 RVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSGT-TGIVDYTNYDDMKHAIKK 165 (277)
Q Consensus 110 ~l~v~~l~~~~~~~~l~~~f~~-~g-~i~~~~~~~~~~~~-~afv~f~~~~~a~~a~~~ 165 (277)
..++.......+..+|++.++. |+ .|..+..+.-+.+. -|+|.+..-.+|.+....
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANR 138 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHHh
Confidence 4555556778899999888865 55 56677666665543 699999888888776554
No 430
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=25.06 E-value=42 Score=19.57 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=9.0
Q ss_pred CceEEEEEcCh
Q 023798 45 PGYAFVEFEEA 55 (277)
Q Consensus 45 ~g~afV~f~~~ 55 (277)
...|+|.|.+.
T Consensus 31 ~~~clV~F~D~ 41 (58)
T 4hcz_A 31 REVCLVQFEDD 41 (58)
T ss_dssp TTEEEEEETTS
T ss_pred CCEEEEEEcCC
Confidence 56899999874
No 431
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=24.89 E-value=64 Score=21.19 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=18.4
Q ss_pred CCHHHHHHHHhccCceeEEEee
Q 023798 18 IREREVEDLFYKYGPIAHIDLK 39 (277)
Q Consensus 18 ~t~~~L~~~F~~~G~v~~v~~~ 39 (277)
.+++.|.++|+.+|+|..-.+.
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MF 25 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMF 25 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEET
T ss_pred hHHHHHHHHHhccCCceEeecc
Confidence 4677799999999999987775
No 432
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=24.81 E-value=1.8e+02 Score=20.84 Aligned_cols=56 Identities=20% Similarity=0.228 Sum_probs=37.2
Q ss_pred EEcCCCCCCCHHHHHHHHhc-cC-ceeEEEeecCCCCCceEEEEEcChHHHHHHHHhc
Q 023798 10 YVGNLPGDIREREVEDLFYK-YG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (277)
Q Consensus 10 ~v~nL~~~~t~~~L~~~F~~-~G-~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l 65 (277)
|+-.+...++..+|++.++. || .|..|.........--|||.+....+|......+
T Consensus 96 yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~~ki 153 (156)
T 2zkr_s 96 LVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKI 153 (156)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHHHHHC
T ss_pred EEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHHHHhc
Confidence 44467889999999998885 44 4555555332222336999999877766655533
No 433
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=24.77 E-value=22 Score=27.89 Aligned_cols=31 Identities=29% Similarity=0.345 Sum_probs=24.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCceeEEEe
Q 023798 8 TLYVGNLPGDIREREVEDLFYKYGPIAHIDL 38 (277)
Q Consensus 8 ~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~ 38 (277)
-..|+|||++++..-|..++.....+..+.+
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~l 128 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHF 128 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEE
Confidence 3479999999999999999987655544443
No 434
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=24.66 E-value=1.1e+02 Score=17.81 Aligned_cols=55 Identities=9% Similarity=-0.004 Sum_probs=41.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEcChHHHHHHHHhc
Q 023798 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (277)
Q Consensus 7 ~~l~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l 65 (277)
.++.|.++.-..=...|...+.. ..|..+.+... .+-+.|+|.+.+....++..+
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~---~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN---EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS---EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc---CCEEEEEECCHHHHHHHHHHc
Confidence 56888899888778889999998 77888887432 356778887666666777643
No 435
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=24.27 E-value=52 Score=20.68 Aligned_cols=20 Identities=15% Similarity=0.484 Sum_probs=17.8
Q ss_pred cCCCCCCCHHHHHHHHhccC
Q 023798 12 GNLPGDIREREVEDLFYKYG 31 (277)
Q Consensus 12 ~nL~~~~t~~~L~~~F~~~G 31 (277)
|.|+..+|+++|.+++....
T Consensus 50 Gqi~~ki~e~~L~~lL~~i~ 69 (80)
T 1eij_A 50 GRVRSKITDEQLKELLKRVA 69 (80)
T ss_dssp CSSCCCCCHHHHHHHHHHHS
T ss_pred CCCCCCcCHHHHHHHHHHHc
Confidence 78899999999999999764
No 436
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=23.38 E-value=70 Score=22.65 Aligned_cols=34 Identities=35% Similarity=0.374 Sum_probs=26.4
Q ss_pred eeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCC
Q 023798 33 IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGY 68 (277)
Q Consensus 33 v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~ 68 (277)
|..+.++. ..+||.||++...++...++..+.|.
T Consensus 33 i~~v~vp~--~fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 33 IYAILAPS--RVKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCEEEECT--TCCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEeec--CCCcEEEEEEEchHHHHHHHhCCCCE
Confidence 55555542 36899999999999998999877764
No 437
>3ezj_A General secretion pathway protein GSPD; general secretory pathway, secretin, single chain antibody, transport, immune system, complex; 2.80A {Escherichia coli}
Probab=23.36 E-value=1.2e+02 Score=23.30 Aligned_cols=116 Identities=10% Similarity=0.120 Sum_probs=60.5
Q ss_pred CCCCCCHHHHHHHHhccCceeEEEeecCCCCCceEEEEEc---ChHHHHHHH---HhcCCCcc---CCceEEEEEccCCC
Q 023798 14 LPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFE---EARDAEDAI---RGRDGYDF---DGHRLRVELAHGGR 84 (277)
Q Consensus 14 L~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~g~afV~f~---~~~~A~~a~---~~l~g~~~---~g~~l~v~~a~~~~ 84 (277)
+..++...+|.++|..++.+..+.+..++.-+|..-+.+. +.+.+..++ -..+|..+ .|..+.|..+....
T Consensus 9 ~sl~f~~~~i~~vl~~la~~~g~n~vvd~~V~G~vtl~~~~~v~~~~~~~~l~~vL~~~gl~~~~~~g~v~~V~p~~~~~ 88 (241)
T 3ezj_A 9 FTANFKDTDLKSFIETVGANLNKTIIMGPGVQGAVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSSAAK 88 (241)
T ss_dssp BCCEEEEEEHHHHHHHHHHHHTCEEEC---CCCEEEEEESSCBCHHHHHHHHHHHHHHTTEEEEEETTTEEEEEEC----
T ss_pred EEEEeCCCCHHHHHHHHHHHhCCeEEECCCCcceEEEEeCCCCCHHHHHHHHHHHHHHCCcEEEEcCCCEEEEEEhHHhh
Confidence 4445566778888888888887888666655666666664 355555443 24778664 58888887765322
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccceEEccCCCCCCCHHHHHHHHhhc
Q 023798 85 GRSSSDRHSSHSSGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRRA 132 (277)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~ 132 (277)
..... ... ...............+.+.+....--...|+.++...
T Consensus 89 ~~~~~-~~~--~~~~~~~~~~~~t~vi~L~~~~a~~l~~~L~~l~~~~ 133 (241)
T 3ezj_A 89 VEPLP-LVG--EGSDNYAGDEMVTKVVPVRNVSVRELAPILRQMIDSA 133 (241)
T ss_dssp ------------------CCCEEEEEEECCSSCGGGTHHHHHHHHHHH
T ss_pred hcCCc-ccc--CCCCCCCCCceEEEEEEecccCHHHHHHHHHHHhCcC
Confidence 21100 000 0000001112233445566666666667778888766
No 438
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=22.99 E-value=35 Score=21.01 Aligned_cols=39 Identities=8% Similarity=0.025 Sum_probs=21.2
Q ss_pred CCceEEEEEcChHHHHHHHHhcC-C----CccCCceEEEEEccC
Q 023798 44 PPGYAFVEFEEARDAEDAIRGRD-G----YDFDGHRLRVELAHG 82 (277)
Q Consensus 44 ~~g~afV~f~~~~~A~~a~~~l~-g----~~~~g~~l~v~~a~~ 82 (277)
.+||+||+-.+-++.--=+..|. + ..-.|..+..+....
T Consensus 11 ~KGfGFI~~~dG~DvFvH~s~i~~~~g~~~l~~G~~V~F~~~~g 54 (74)
T 2kcm_A 11 AKKYGFIQGDDGESYFLHFSELLDKKDEGKLVKGSMVHFDPTPT 54 (74)
T ss_dssp TTTEEEEEETTSCEECCCGGGSSCSGGGTTCCTTSEEEEEEECT
T ss_pred CCCEEEEecCCCceEEEEhhhcccCCCCCCCCCCCEEEEEEEEC
Confidence 38999998765432222222233 1 223477777776643
No 439
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=22.92 E-value=38 Score=20.30 Aligned_cols=11 Identities=27% Similarity=0.739 Sum_probs=8.5
Q ss_pred CCceEEEEEcC
Q 023798 44 PPGYAFVEFEE 54 (277)
Q Consensus 44 ~~g~afV~f~~ 54 (277)
.+||+||+-.+
T Consensus 12 ~kGfGFI~~~~ 22 (67)
T 3cam_A 12 AKGFGFITPDE 22 (67)
T ss_dssp TTTEEEEEETT
T ss_pred CCCeEEEecCC
Confidence 38999998654
No 440
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=22.77 E-value=1.7e+02 Score=20.93 Aligned_cols=56 Identities=16% Similarity=0.140 Sum_probs=37.0
Q ss_pred EEcCCCCCCCHHHHHHHHhcc-C-ceeEEEeecCCCCCceEEEEEcChHHHHHHHHhc
Q 023798 10 YVGNLPGDIREREVEDLFYKY-G-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (277)
Q Consensus 10 ~v~nL~~~~t~~~L~~~F~~~-G-~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l 65 (277)
|+-.+...++..+|++.++.+ | .|..|.........--|||.+....+|......+
T Consensus 92 ~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnki 149 (152)
T 3iz5_X 92 LVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANKI 149 (152)
T ss_dssp EEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHGGG
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHHhh
Confidence 344567888999998888754 4 3555555433333346999999887877765433
No 441
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=22.66 E-value=39 Score=20.14 Aligned_cols=11 Identities=45% Similarity=0.921 Sum_probs=8.6
Q ss_pred CCceEEEEEcC
Q 023798 44 PPGYAFVEFEE 54 (277)
Q Consensus 44 ~~g~afV~f~~ 54 (277)
.+||+||+-.+
T Consensus 12 ~kGfGFI~~~~ 22 (66)
T 1c9o_A 12 EKGYGFIEVEG 22 (66)
T ss_dssp TTTEEEEEETT
T ss_pred CCCeEEEecCC
Confidence 38999998664
No 442
>1gff_3 Bacteriophage G4 capsid proteins GPF, GPG, GPJ; coat protein, icosahedral virus; 3.00A {Enterobacteria phage G4}
Probab=22.37 E-value=23 Score=16.29 Aligned_cols=11 Identities=18% Similarity=-0.013 Sum_probs=5.3
Q ss_pred CCCCccccchh
Q 023798 254 KPRSLSRYASL 264 (277)
Q Consensus 254 r~rs~~r~~~~ 264 (277)
..||++++.++
T Consensus 5 ~rrs~~r~kga 15 (26)
T 1gff_3 5 IRRSGGKSKGA 15 (26)
T ss_pred cccCCCCCCce
Confidence 34455555444
No 443
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=22.11 E-value=55 Score=28.64 Aligned_cols=41 Identities=22% Similarity=0.411 Sum_probs=28.1
Q ss_pred HHHHHH--hccCceeEEEeecCCCC--CceEEEEEcChHHHHHHH
Q 023798 22 EVEDLF--YKYGPIAHIDLKIPPRP--PGYAFVEFEEARDAEDAI 62 (277)
Q Consensus 22 ~L~~~F--~~~G~v~~v~~~~~~~~--~g~afV~f~~~~~A~~a~ 62 (277)
+|..+| +.+|-|..+.+...+.+ ...+++.|.+.++|..|+
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHH
Confidence 456667 37899999988443322 345788999988876644
No 444
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=22.01 E-value=1.8e+02 Score=20.78 Aligned_cols=55 Identities=15% Similarity=0.081 Sum_probs=38.6
Q ss_pred eEEccCCCCCCCHHHHHHHHhh-cC-ceeEEEEEecCCCC-EEEEEEcChhhHHHHHH
Q 023798 110 RVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDGSGT-TGIVDYTNYDDMKHAIK 164 (277)
Q Consensus 110 ~l~v~~l~~~~~~~~l~~~f~~-~g-~i~~~~~~~~~~~~-~afv~f~~~~~a~~a~~ 164 (277)
..++.......+..+|++.++. |+ .|..+..+.-+.+. -|||.+..-.+|.+...
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAn 147 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVAN 147 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHG
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 3455556778888888888764 55 56667666655443 79999998888776654
No 445
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=21.88 E-value=2.1e+02 Score=20.09 Aligned_cols=54 Identities=13% Similarity=0.178 Sum_probs=36.0
Q ss_pred EEcCCCCCCCHHHHHHHHhcc-C-ceeEEEeecCCCCCceEEEEEcChHHHHHHHH
Q 023798 10 YVGNLPGDIREREVEDLFYKY-G-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIR 63 (277)
Q Consensus 10 ~v~nL~~~~t~~~L~~~F~~~-G-~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~ 63 (277)
|+-.+...++..+|++.++.+ | .|..|.........--|||.+....+|.....
T Consensus 82 ~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAn 137 (142)
T 3u5e_X 82 LVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIAN 137 (142)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHH
Confidence 344577889999999888854 4 45555553333333469999998777776544
No 446
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=21.64 E-value=42 Score=20.54 Aligned_cols=11 Identities=45% Similarity=0.821 Sum_probs=8.4
Q ss_pred CCceEEEEEcC
Q 023798 44 PPGYAFVEFEE 54 (277)
Q Consensus 44 ~~g~afV~f~~ 54 (277)
.+||+||+-.+
T Consensus 12 ~kGfGFI~~~~ 22 (73)
T 3a0j_A 12 EKGYGFIEREG 22 (73)
T ss_dssp TTTEEEEECTT
T ss_pred CCCEEEEecCC
Confidence 38999998654
No 447
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=21.29 E-value=53 Score=14.94 Aligned_cols=12 Identities=42% Similarity=0.822 Sum_probs=9.1
Q ss_pred HHHHHHHHhccC
Q 023798 20 EREVEDLFYKYG 31 (277)
Q Consensus 20 ~~~L~~~F~~~G 31 (277)
-.+++.+|.++|
T Consensus 14 ikqvkklfkkwg 25 (26)
T 1ytr_A 14 IKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHcC
Confidence 457888998876
No 448
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.02 E-value=1.7e+02 Score=18.58 Aligned_cols=57 Identities=11% Similarity=0.186 Sum_probs=38.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-cC-ceeEEEeecCCCCCceEEEEEcChHHHHHHHHhc
Q 023798 9 LYVGNLPGDIREREVEDLFYK-YG-PIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65 (277)
Q Consensus 9 l~v~nL~~~~t~~~L~~~F~~-~G-~v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l 65 (277)
.|+-.+...++..+|++.++. || .|..|.....+...--|||.+....+|......+
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHHS
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHhh
Confidence 344467889999999999886 44 4555555433333346999999888887755433
No 449
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=20.51 E-value=73 Score=16.57 Aligned_cols=15 Identities=13% Similarity=0.208 Sum_probs=12.6
Q ss_pred CCCCHHHHHHHHhcc
Q 023798 16 GDIREREVEDLFYKY 30 (277)
Q Consensus 16 ~~~t~~~L~~~F~~~ 30 (277)
.+++.++|+.+|...
T Consensus 20 rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 20 IDTDLNQLKEVFSGI 34 (37)
T ss_dssp SCCCHHHHHHHHHTC
T ss_pred CcCCHHHHHHHHHHc
Confidence 468999999999865
No 450
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=20.46 E-value=87 Score=23.57 Aligned_cols=35 Identities=17% Similarity=0.111 Sum_probs=27.1
Q ss_pred eeEEEeecCCCCCceEEEEEcChHHHHHHHHhcCCCc
Q 023798 33 IAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYD 69 (277)
Q Consensus 33 v~~v~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~ 69 (277)
|..+... ...+||-|||=.++.++..|+..+.+..
T Consensus 139 I~Si~~~--d~lkGYIyVEA~~~~~V~~ai~Gi~~vy 173 (200)
T 2exu_A 139 ILSIFQR--DNYTGRIYIEAPKQSVIEKFCNGVPDIY 173 (200)
T ss_dssp CCEEECC--TTSTTEEEEECSCHHHHHHHHTTCTTEE
T ss_pred EEEEEec--CCCcEEEEEEECCHHHHHHHHhhhhhhh
Confidence 4444432 3469999999999999999999887753
No 451
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=20.37 E-value=31 Score=21.18 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=13.6
Q ss_pred CHHHHHHHHhccCceeEE
Q 023798 19 REREVEDLFYKYGPIAHI 36 (277)
Q Consensus 19 t~~~L~~~F~~~G~v~~v 36 (277)
|-=||.+++.+||.+..+
T Consensus 4 tlYDVqQLLK~fG~~IY~ 21 (72)
T 2nn4_A 4 TFYDVQQLLKTFGHIVYF 21 (72)
T ss_dssp SHHHHHHHHHTTTCCCCC
T ss_pred cHHHHHHHHHHCCEEEEe
Confidence 446889999999976543
No 452
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=20.37 E-value=47 Score=19.81 Aligned_cols=11 Identities=36% Similarity=0.809 Sum_probs=8.8
Q ss_pred CCceEEEEEcC
Q 023798 44 PPGYAFVEFEE 54 (277)
Q Consensus 44 ~~g~afV~f~~ 54 (277)
.+||+||+-.+
T Consensus 11 ~kGfGFI~~~~ 21 (66)
T 1g6p_A 11 KKGYGFITKDE 21 (66)
T ss_dssp TTTEEEEEETT
T ss_pred CCCEEEEecCC
Confidence 38999998764
Done!