BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023799
(277 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255545402|ref|XP_002513761.1| Photosystem II 22 kDa protein, chloroplast precursor, putative
[Ricinus communis]
gi|223546847|gb|EEF48344.1| Photosystem II 22 kDa protein, chloroplast precursor, putative
[Ricinus communis]
Length = 275
Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust.
Identities = 225/284 (79%), Positives = 244/284 (85%), Gaps = 16/284 (5%)
Query: 1 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
MAQTML MSGVST H +LKRD L+ FQ LRPKPFS L+F+PL T +++ + SK
Sbjct: 1 MAQTMLFMSGVSTRHVVDLKRDPLLQFQVDRLRPKPFSSLLFSPLP----TNSSSFAPSK 56
Query: 61 AFSTVALFKSK-------TKAPPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFA 113
F+T ALFKSK T PK K VEDG+FGTSGG GFTKQNELFVGRVAM+GFA
Sbjct: 57 TFTTFALFKSKAKAAPKKTVVKPKQK---VEDGVFGTSGGIGFTKQNELFVGRVAMLGFA 113
Query: 114 ASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEP 173
ASLLGEG+TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVD+P P
Sbjct: 114 ASLLGEGLTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDP--P 171
Query: 174 TGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL 233
TG+ GAVIPPGKG R+ALGLKEGGP+FGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL
Sbjct: 172 TGIEGAVIPPGKGFRAALGLKEGGPLFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL 231
Query: 234 AQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
AQLNIETGIP+NEIEPLVLFNVIFFF AALNPGTGKFVTDE++E
Sbjct: 232 AQLNIETGIPVNEIEPLVLFNVIFFFFAALNPGTGKFVTDEEDE 275
>gi|224063082|ref|XP_002300987.1| hypothetical protein POPTRDRAFT_816277 [Populus trichocarpa]
gi|118488707|gb|ABK96164.1| unknown [Populus trichocarpa]
gi|222842713|gb|EEE80260.1| hypothetical protein POPTRDRAFT_816277 [Populus trichocarpa]
Length = 272
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 223/281 (79%), Positives = 243/281 (86%), Gaps = 13/281 (4%)
Query: 1 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
MAQTM+LMSGVST +LKRD L+ FQ Q LRP PFS L++NPL +++ SSS
Sbjct: 1 MAQTMVLMSGVSTRQVVDLKRDPLLQFQVQRLRPAPFSRLLYNPLPSKA-------SSSN 53
Query: 61 AFSTVALFKSKTKAPPKTKKPKV----EDGIFGTSGGFGFTKQNELFVGRVAMIGFAASL 116
AF+T+ALFK +TKA PK P EDGIFGTSGG GFTKQNELFVGRVAMIGFAASL
Sbjct: 54 AFTTLALFKPRTKAVPKKAAPPPKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASL 113
Query: 117 LGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGL 176
LGE ITGKGIL+QLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG+FVD+P TG+
Sbjct: 114 LGEAITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDDPT--TGI 171
Query: 177 GGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQL 236
GAVIPPGK R+ALGLKEGGP+FGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQL
Sbjct: 172 EGAVIPPGKSFRAALGLKEGGPLFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQL 231
Query: 237 NIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
NIETGIP+NEIEPLVLFNV+FFF+AALNPGTGKFVTDEDEE
Sbjct: 232 NIETGIPVNEIEPLVLFNVLFFFIAALNPGTGKFVTDEDEE 272
>gi|357463499|ref|XP_003602031.1| Photosystem II 22 kDa protein [Medicago truncatula]
gi|355491079|gb|AES72282.1| Photosystem II 22 kDa protein [Medicago truncatula]
gi|388508062|gb|AFK42097.1| unknown [Medicago truncatula]
Length = 270
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 214/280 (76%), Positives = 236/280 (84%), Gaps = 13/280 (4%)
Query: 1 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
MAQTMLLMS VS++++ +LK+D L+ Q Q LRP+ FS + FNPL + S SS+
Sbjct: 1 MAQTMLLMSSVSSTYSVDLKKDPLLQLQCQRLRPR-FSDVSFNPLPSNS-----KCFSSR 54
Query: 61 AFSTVALFKSKTKAPPKTKKPKV---EDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLL 117
F+T+ALFKSKTKAP K K EDGIFGTSGGFGFTKQNELFVGRVAMIGFAAS+L
Sbjct: 55 TFTTLALFKSKTKAPAKVVKKPKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASIL 114
Query: 118 GEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLG 177
GE +TGKGILAQLNLETGIPIYEAEPLLLFFI+FTLLGAIGALGDRGKFVD DEP
Sbjct: 115 GEALTGKGILAQLNLETGIPIYEAEPLLLFFIIFTLLGAIGALGDRGKFVD--DEPNT-- 170
Query: 178 GAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLN 237
G VIPPGKG RSALGL EGGP+FGFTKSNELFVGRLAQLG FSLIGEIITGKGALAQLN
Sbjct: 171 GGVIPPGKGFRSALGLSEGGPLFGFTKSNELFVGRLAQLGFVFSLIGEIITGKGALAQLN 230
Query: 238 IETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
IETG+PI EIEPLVLFNVIFFF+AALNPGTG FVTD++E+
Sbjct: 231 IETGVPITEIEPLVLFNVIFFFIAALNPGTGTFVTDDEED 270
>gi|388510160|gb|AFK43146.1| unknown [Lotus japonicus]
Length = 273
Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust.
Identities = 225/281 (80%), Positives = 245/281 (87%), Gaps = 12/281 (4%)
Query: 1 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPL-SNESLTAAAASSSS 59
MAQTMLLMS VS+S++ +LK+D L+ Q+Q LRPK FS L FNPL SN SL SS
Sbjct: 1 MAQTMLLMSSVSSSYSVDLKKDPLLHLQSQRLRPK-FSQLSFNPLPSNSSLF------SS 53
Query: 60 KAFSTVALFKSKTKAPPKT---KKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASL 116
+ F+T+ALFKSK KAPP +KPKVEDG+FGTSGG GFTKQNELFVGRVAMIGFAASL
Sbjct: 54 RTFTTLALFKSKAKAPPPKVVKQKPKVEDGVFGTSGGIGFTKQNELFVGRVAMIGFAASL 113
Query: 117 LGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGL 176
LGE +TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVD+ + PTGL
Sbjct: 114 LGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDD-ESPTGL 172
Query: 177 GGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQL 236
AVIPPGKGLR ALGL EGGP+FGFTKSNELFVGRLAQLG AFSLIGEIITGKGALAQL
Sbjct: 173 DKAVIPPGKGLRGALGLSEGGPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKGALAQL 232
Query: 237 NIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
NIETGIPINEIEPLVLFNV FFF+AALNPGTGKFV+D+ E+
Sbjct: 233 NIETGIPINEIEPLVLFNVAFFFIAALNPGTGKFVSDDGED 273
>gi|188509922|gb|ACD56611.1| putative photosystem II protein [Gossypioides kirkii]
Length = 277
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 233/284 (82%), Positives = 250/284 (88%), Gaps = 14/284 (4%)
Query: 1 MAQTMLLMSG--VSTSHAGNLKRDS-LVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASS 57
MAQTML+MS VS SH NLKRD L+ FQ Q L+PKPFSH +FNPLSN A A+S
Sbjct: 1 MAQTMLVMSSTSVSASHVVNLKRDHPLLHFQAQGLKPKPFSHFLFNPLSN-----AVAAS 55
Query: 58 SSKAFSTVALFKSKTKAPPKTKKPK----VEDGIFGTSGGFGFTKQNELFVGRVAMIGFA 113
SSKAF+T ALFKSKTKA PK +PK VEDGIFGTSGG GFTKQNELFVGRVAMIGFA
Sbjct: 56 SSKAFTTFALFKSKTKAAPKKAEPKPKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFA 115
Query: 114 ASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEP 173
ASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG+FVDEP P
Sbjct: 116 ASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDEP--P 173
Query: 174 TGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL 233
TG+ GAVIPPGKG+R ALGLKEGGP+FGFTK+NELFVGRLAQLGIAFSLIGEIITGKGAL
Sbjct: 174 TGVEGAVIPPGKGVRGALGLKEGGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGAL 233
Query: 234 AQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
AQLNIETGIPI++IEPLVLFNV FFF AA+NPGTGKFVTDE+E+
Sbjct: 234 AQLNIETGIPISDIEPLVLFNVAFFFAAAINPGTGKFVTDEEED 277
>gi|133902325|gb|ABO41853.1| putative photosystem II protein [Gossypium hirsutum]
Length = 278
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 232/284 (81%), Positives = 246/284 (86%), Gaps = 14/284 (4%)
Query: 1 MAQTMLLMSG--VSTSHAGNLKRD-SLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASS 57
MAQTML+MS VSTSH NLKRD +L+ FQ Q L+PKP SH +FNP SN A+S
Sbjct: 1 MAQTMLVMSSTRVSTSHVVNLKRDHTLLHFQAQGLKPKPSSHFLFNPHSN-----TVAAS 55
Query: 58 SSKAFSTVALFKSKTKAPPKTKKPK----VEDGIFGTSGGFGFTKQNELFVGRVAMIGFA 113
SSKAF+T ALFK KTKA PK PK VEDGIFGTSGG GFTKQNELFVGRVAMIGFA
Sbjct: 56 SSKAFTTFALFKPKTKAAPKKAAPKPKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFA 115
Query: 114 ASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEP 173
ASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEP P
Sbjct: 116 ASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEP--P 173
Query: 174 TGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL 233
TG+ GAVIPPGKG+R ALGLKEGGP+FGFTK+NELFVGRLAQLGIAFSLIGEIITGKGAL
Sbjct: 174 TGIEGAVIPPGKGIRGALGLKEGGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGAL 233
Query: 234 AQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
AQLNIETGIPI++IEPLVLFNV FFF AA+NPGTGKFVTDE EE
Sbjct: 234 AQLNIETGIPISDIEPLVLFNVAFFFFAAINPGTGKFVTDEAEE 277
>gi|217072844|gb|ACJ84782.1| unknown [Medicago truncatula]
Length = 262
Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust.
Identities = 206/269 (76%), Positives = 225/269 (83%), Gaps = 13/269 (4%)
Query: 1 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
MAQTMLLMS VS++++ +LK+D L+ Q Q LRP+ FS + FNPL + S SS+
Sbjct: 1 MAQTMLLMSSVSSTYSVDLKKDPLLQLQCQRLRPR-FSDVSFNPLPSNS-----KCFSSR 54
Query: 61 AFSTVALFKSKTKAPPKTKKPKV---EDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLL 117
F+T+ALFKSKTKAP K K EDGIFGTS GFGFTKQNELFVGRVAMIGFAAS+L
Sbjct: 55 TFTTLALFKSKTKAPAKVVKKPKPKVEDGIFGTSRGFGFTKQNELFVGRVAMIGFAASIL 114
Query: 118 GEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLG 177
GE +TGKGILAQLNLETGIPIYEAEPLLLFFI+FTLLGAIGALGDRGKFVD DEP
Sbjct: 115 GEALTGKGILAQLNLETGIPIYEAEPLLLFFIIFTLLGAIGALGDRGKFVD--DEPN--T 170
Query: 178 GAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLN 237
G VIPPGKG RSALGL EGGP+FGFTKSNELFVGRLAQLG FSLIGEIITGKGALAQLN
Sbjct: 171 GGVIPPGKGFRSALGLSEGGPLFGFTKSNELFVGRLAQLGFVFSLIGEIITGKGALAQLN 230
Query: 238 IETGIPINEIEPLVLFNVIFFFVAALNPG 266
IETG+PI EIEPLVLFNVIFFF+AALNPG
Sbjct: 231 IETGVPITEIEPLVLFNVIFFFIAALNPG 259
>gi|449465453|ref|XP_004150442.1| PREDICTED: photosystem II 22 kDa protein, chloroplastic-like
[Cucumis sativus]
gi|449529497|ref|XP_004171736.1| PREDICTED: photosystem II 22 kDa protein, chloroplastic-like
[Cucumis sativus]
Length = 272
Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 212/280 (75%), Positives = 235/280 (83%), Gaps = 15/280 (5%)
Query: 2 AQTMLLMSGVSTSHAGNLKRD-SLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
AQTMLL SGV H LKR+ SL TQ F+ L FNPL + S+ S +
Sbjct: 3 AQTMLLTSGVCVGHGVCLKRELSLRPNYTQ------FTRLFFNPLPSHSV-----SLPPR 51
Query: 61 AFSTVALFKSKTKAPPK-TKKPK--VEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLL 117
F+T+A+FKS+TKAPPK +KPK VEDGIFGTSGG GFTKQNELFVGRVAMIGFAAS+L
Sbjct: 52 GFTTLAVFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASIL 111
Query: 118 GEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLG 177
GE ITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKF+D+P+ TGL
Sbjct: 112 GEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLE 171
Query: 178 GAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLN 237
AVIPPGK RSALGLKEGGP+FGFTK+NELFVGRLAQLG AFSLIGEIITGKGALAQLN
Sbjct: 172 RAVIPPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLN 231
Query: 238 IETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
IETG+PINEIEPLVL NV+FFF+AA+NPGTGKFVTDE+++
Sbjct: 232 IETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 271
>gi|225459564|ref|XP_002285857.1| PREDICTED: photosystem II 22 kDa protein, chloroplastic [Vitis
vinifera]
gi|302141814|emb|CBI19017.3| unnamed protein product [Vitis vinifera]
Length = 270
Score = 366 bits (940), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 214/281 (76%), Positives = 237/281 (84%), Gaps = 15/281 (5%)
Query: 1 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
MAQTML+ VS +LKR L+ Q LRPKPFSH ++S+SS
Sbjct: 1 MAQTMLITPSVSGHSVLDLKRQPLL----QRLRPKPFSH------LLLPPLPTSSSTSSP 50
Query: 61 AFSTVALFKSKTKAPPKTK----KPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASL 116
AF+T+ALFKSKTKA P K KP+VEDGIFGTSGG GFTK+NELFVGRVAM+GFAASL
Sbjct: 51 AFTTLALFKSKTKAAPSKKVTKPKPQVEDGIFGTSGGIGFTKKNELFVGRVAMLGFAASL 110
Query: 117 LGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGL 176
LGE ITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG+FVD+ D PTG+
Sbjct: 111 LGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDD-DPPTGI 169
Query: 177 GGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQL 236
GAVIPPGKGLRSALGL+EGGP+FGFTKSNELFVGRLAQLGI FS+IGEIITGKGALAQL
Sbjct: 170 EGAVIPPGKGLRSALGLREGGPLFGFTKSNELFVGRLAQLGIVFSIIGEIITGKGALAQL 229
Query: 237 NIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
NIETG+PI++IEPLVLFNVIFFF AALNPG+GKFVTD++EE
Sbjct: 230 NIETGVPISDIEPLVLFNVIFFFFAALNPGSGKFVTDDEEE 270
>gi|400890|sp|Q02060.1|PSBS_SPIOL RecName: Full=Photosystem II 22 kDa protein, chloroplastic;
AltName: Full=CP22; Flags: Precursor
gi|21307|emb|CAA48557.1| 22kD-protein of PSII [Spinacia oleracea]
gi|260917|gb|AAB24338.1| photosystem II 22 kda polypeptide [Spinacia oleracea]
Length = 274
Score = 358 bits (919), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 211/282 (74%), Positives = 237/282 (84%), Gaps = 14/282 (4%)
Query: 1 MAQTMLLM-SGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSS 59
MAQ MLLM GVST++ +LKR++L+ Q Q ++PK + SN + +SSSS
Sbjct: 1 MAQAMLLMMPGVSTTNTIDLKRNALLKLQIQKIKPK-------SSTSNLFFSPLPSSSSS 53
Query: 60 K--AFSTVALFKSKTKAPPKTKKPK--VEDGIFGTSGGFGFTKQNELFVGRVAMIGFAAS 115
F T+ALFKSK KAP K +KPK VEDG+FGTSGG GFTK+NELFVGRVAMIGFAAS
Sbjct: 54 SSTVFKTLALFKSKAKAPKKVEKPKLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFAAS 113
Query: 116 LLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTG 175
LLGEGITGKGIL+QLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG+FVDEP TG
Sbjct: 114 LLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDEPT--TG 171
Query: 176 LGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQ 235
L AVIPPGK +RSALGLK GP+FGFTKSNELFVGRLAQLG AFSLIGEIITGKGALAQ
Sbjct: 172 LEKAVIPPGKDVRSALGLKTKGPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKGALAQ 231
Query: 236 LNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
LNIETG+PINEIEPLVL NV+FFF+AA+NPGTGKF+TD++EE
Sbjct: 232 LNIETGVPINEIEPLVLLNVVFFFIAAINPGTGKFITDDEEE 273
>gi|356509413|ref|XP_003523444.1| PREDICTED: photosystem II 22 kDa protein, chloroplastic-like
[Glycine max]
Length = 273
Score = 356 bits (913), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 219/282 (77%), Positives = 241/282 (85%), Gaps = 15/282 (5%)
Query: 1 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
MAQTMLLMS VS+S++ +LK+D + Q+Q LRPK FS L FNPL ++ ++ SS +
Sbjct: 1 MAQTMLLMSSVSSSYSVDLKKDLFLQLQSQSLRPK-FSQLSFNPLP----SSTSSFSSPR 55
Query: 61 AFSTVALFKSKTKAPP-KTK----KPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAAS 115
F+T+ALFKSKTKA P KTK K KVEDGIFGTSGGFGFTKQNELFVGRVAM+GFAAS
Sbjct: 56 TFTTLALFKSKTKAAPAKTKVTKPKQKVEDGIFGTSGGFGFTKQNELFVGRVAMLGFAAS 115
Query: 116 LLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTG 175
LLGEGITGKGILAQLNLETGIP+YEAEPLLLFFILFTLLGAIG LGDRGKFVD DEPT
Sbjct: 116 LLGEGITGKGILAQLNLETGIPLYEAEPLLLFFILFTLLGAIGGLGDRGKFVD--DEPT- 172
Query: 176 LGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQ 235
G VIPPGKG R ALGL GP+FGFTK+NELFVGRLAQLG FSLIGEIITGKGALAQ
Sbjct: 173 -TGGVIPPGKGFREALGLGS-GPLFGFTKANELFVGRLAQLGFVFSLIGEIITGKGALAQ 230
Query: 236 LNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
LNIETG+PINEIEPLVLFNV+FFF+AALNPGTGKFVTDE E+
Sbjct: 231 LNIETGVPINEIEPLVLFNVLFFFIAALNPGTGKFVTDEGED 272
>gi|255645594|gb|ACU23291.1| unknown [Glycine max]
Length = 273
Score = 353 bits (905), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 218/282 (77%), Positives = 240/282 (85%), Gaps = 15/282 (5%)
Query: 1 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
MAQTMLLMS VS+S++ +LK+D + Q+Q LRPK FS L FNPL ++ ++ SS +
Sbjct: 1 MAQTMLLMSSVSSSYSVDLKKDLFLQLQSQSLRPK-FSQLSFNPLP----SSTSSFSSPR 55
Query: 61 AFSTVALFKSKTKAPP-KTK----KPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAAS 115
F+T+ALFKSKTKA P KTK K KVEDGIFGTSGGFGFTKQNELFVGRVAM+GFAAS
Sbjct: 56 TFTTLALFKSKTKAAPAKTKVTKPKQKVEDGIFGTSGGFGFTKQNELFVGRVAMLGFAAS 115
Query: 116 LLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTG 175
LLGEGITGKGILAQLNLETGIP+YEAEPLLLFFILFTLLGAIG LGDRGKFVD DEPT
Sbjct: 116 LLGEGITGKGILAQLNLETGIPLYEAEPLLLFFILFTLLGAIGGLGDRGKFVD--DEPT- 172
Query: 176 LGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQ 235
G VIPPGKG R ALGL GP+FGFTK+NE FVGRLAQLG FSLIGEIITGKGALAQ
Sbjct: 173 -TGGVIPPGKGFREALGLGS-GPLFGFTKANEPFVGRLAQLGFVFSLIGEIITGKGALAQ 230
Query: 236 LNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
LNIETG+PINEIEPLVLFNV+FFF+AALNPGTGKFVTDE E+
Sbjct: 231 LNIETGVPINEIEPLVLFNVLFFFIAALNPGTGKFVTDEGED 272
>gi|133902304|gb|ABO41835.1| putative photosystem II protein [Gossypium raimondii]
Length = 278
Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 229/284 (80%), Positives = 244/284 (85%), Gaps = 14/284 (4%)
Query: 1 MAQTMLLMSGVSTSHAG--NLKRD-SLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASS 57
MAQTML+MS S S + NLKRD +L+ FQ Q L+PKP SH +FNP SN A+S
Sbjct: 1 MAQTMLVMSSTSVSTSHVVNLKRDHTLLHFQAQGLKPKPSSHFLFNPHSN-----TVAAS 55
Query: 58 SSKAFSTVALFKSKTKAPPKTKKPK----VEDGIFGTSGGFGFTKQNELFVGRVAMIGFA 113
SSKAF+T ALFK KTKA PK PK VEDGIFGTSGG GFTKQNELFVGRVAMIGFA
Sbjct: 56 SSKAFTTFALFKPKTKAAPKKAAPKPKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFA 115
Query: 114 ASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEP 173
ASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEP P
Sbjct: 116 ASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEP--P 173
Query: 174 TGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL 233
TG+ GAVIPPGKG+R ALGLKEGGP+FGFTK+NELFVGRLAQLGIAFSLIGEIITGKGAL
Sbjct: 174 TGIEGAVIPPGKGIRGALGLKEGGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGAL 233
Query: 234 AQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
AQLNIETGIPI++IEPLVLFNV FFF AA+NPGTGKFVTDE EE
Sbjct: 234 AQLNIETGIPISDIEPLVLFNVAFFFFAAINPGTGKFVTDEAEE 277
>gi|356515892|ref|XP_003526631.1| PREDICTED: photosystem II 22 kDa protein, chloroplastic-like
[Glycine max]
Length = 273
Score = 349 bits (896), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 216/282 (76%), Positives = 237/282 (84%), Gaps = 15/282 (5%)
Query: 1 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
MAQTMLLMS VS+S++ +LK+D + Q+Q LRPK FS L FN + ++ SS +
Sbjct: 1 MAQTMLLMSSVSSSYSVDLKKDLFLQLQSQSLRPK-FSQLSFN----PLPPSTSSFSSPR 55
Query: 61 AFSTVALFKSKTKAPP-KTK----KPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAAS 115
F+T+ALFKSKTKA P KTK K KVEDGIFGTSGGFGFTKQNELFVGRVAM+GFAAS
Sbjct: 56 TFTTLALFKSKTKAAPAKTKVTKPKQKVEDGIFGTSGGFGFTKQNELFVGRVAMLGFAAS 115
Query: 116 LLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTG 175
LLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIG LGDRGKFVD DEPT
Sbjct: 116 LLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGGLGDRGKFVD--DEPT- 172
Query: 176 LGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQ 235
G VIP GKG R ALGL GP+FGFTK+NELFVGRLAQLG FSLIGEIITGKGALAQ
Sbjct: 173 -TGGVIPSGKGFREALGLGS-GPLFGFTKANELFVGRLAQLGFVFSLIGEIITGKGALAQ 230
Query: 236 LNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
LNIETG+PINEIEPLVLFNV+FFF+AALNPGTGKFVTD+ E+
Sbjct: 231 LNIETGVPINEIEPLVLFNVLFFFIAALNPGTGKFVTDDGED 272
>gi|255638809|gb|ACU19708.1| unknown [Glycine max]
Length = 273
Score = 343 bits (880), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 214/282 (75%), Positives = 235/282 (83%), Gaps = 15/282 (5%)
Query: 1 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
MAQTMLLMS VS+S++ +LK+D + Q+Q LRPK FS L FN + ++ SS +
Sbjct: 1 MAQTMLLMSSVSSSYSVDLKKDLFLQLQSQSLRPK-FSQLSFN----PLPPSTSSFSSPR 55
Query: 61 AFSTVALFKSKTKAPP-KTK----KPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAAS 115
F+T+ALFKSKTKA P KTK K KVEDGIFGTSGGFGFTKQNELFVGRVAM+GFAAS
Sbjct: 56 TFTTLALFKSKTKAAPAKTKVTKPKQKVEDGIFGTSGGFGFTKQNELFVGRVAMLGFAAS 115
Query: 116 LLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTG 175
LLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIG LGDRGKFVD DEPT
Sbjct: 116 LLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGGLGDRGKFVD--DEPT- 172
Query: 176 LGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQ 235
G VIP GKG R ALGL GP+FGFTK+NELFVGRLAQLG SLIGEIITGKGALAQ
Sbjct: 173 -TGGVIPSGKGFREALGLGS-GPLFGFTKANELFVGRLAQLGFVSSLIGEIITGKGALAQ 230
Query: 236 LNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
LNIETG+PINEIEPLVLFNV+FFF+AALNPGTGKFVT + E+
Sbjct: 231 LNIETGVPINEIEPLVLFNVLFFFIAALNPGTGKFVTGDGED 272
>gi|106879623|emb|CAJ38395.1| Photosystem II, 22 kDa Protein [Plantago major]
Length = 262
Score = 339 bits (869), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 200/281 (71%), Positives = 227/281 (80%), Gaps = 23/281 (8%)
Query: 1 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
MAQTMLL + VS +LK + + + +PK FS+ + P +N S S
Sbjct: 1 MAQTMLLSANVSA----HLKSEQPLI---KTFKPKAFSNFVLPPRTN--------VSRSL 45
Query: 61 AFSTVALFKSKTKAPPKT----KKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASL 116
F+T ALFKSKTKAP K +KPKVEDGIFGTSGG GFTKQNELFVGRVAMIGFAASL
Sbjct: 46 PFTTYALFKSKTKAPTKAPVVKEKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASL 105
Query: 117 LGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGL 176
LGE ITGKGILAQLNLETGIPI+EAEPLLLFFILF LLGAIGALGDRG+FV DEPTGL
Sbjct: 106 LGEAITGKGILAQLNLETGIPIFEAEPLLLFFILFNLLGAIGALGDRGRFV---DEPTGL 162
Query: 177 GGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQL 236
AVI PGKG R+ALGL GP+FGFTK+NELFVGRLAQLGIAFS+IGEI+TGKGALAQL
Sbjct: 163 DKAVIAPGKGFRAALGLGS-GPLFGFTKANELFVGRLAQLGIAFSIIGEIVTGKGALAQL 221
Query: 237 NIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
N+ETG+PI E+EPL+LFN++FFFVAA+NPGTGKFVTDE+E+
Sbjct: 222 NVETGVPIGELEPLLLFNIVFFFVAAINPGTGKFVTDEEED 262
>gi|115441299|ref|NP_001044929.1| Os01g0869800 [Oryza sativa Japonica Group]
gi|15408693|dbj|BAB64099.1| putative photosystem II subunit PsbS [Oryza sativa Japonica Group]
gi|20160872|dbj|BAB89811.1| putative photosystem II subunit PsbS [Oryza sativa Japonica Group]
gi|113534460|dbj|BAF06843.1| Os01g0869800 [Oryza sativa Japonica Group]
gi|125528521|gb|EAY76635.1| hypothetical protein OsI_04589 [Oryza sativa Indica Group]
gi|125572786|gb|EAZ14301.1| hypothetical protein OsJ_04227 [Oryza sativa Japonica Group]
gi|215701291|dbj|BAG92715.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737433|dbj|BAG96563.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764949|dbj|BAG86646.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 268
Score = 338 bits (867), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 206/284 (72%), Positives = 226/284 (79%), Gaps = 23/284 (8%)
Query: 1 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
MAQ+ML+ T A + R Q +RP PFS L+ LS S + A S
Sbjct: 1 MAQSMLVSGANGTVAAASTSR-------LQPVRPTPFSRLV---LSQPSSSLGRAVS--- 47
Query: 61 AFSTVALF-KSKTKAPPKTK---KPK--VEDGIFGTSGGFGFTKQNELFVGRVAMIGFAA 114
TVALF +SKTKA P K KPK EDGIFGTSGG GFTK+NELFVGRVAM+GFAA
Sbjct: 48 -VKTVALFGRSKTKAAPARKAEPKPKFKTEDGIFGTSGGIGFTKENELFVGRVAMLGFAA 106
Query: 115 SLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEP- 173
S+LGE ITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG FVD D+P
Sbjct: 107 SILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGSFVD--DQPV 164
Query: 174 TGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL 233
TGL AVI PGKG RSALGL EGGP+FGFTK+NELFVGRLAQLGIAFS+IGEIITGKGAL
Sbjct: 165 TGLDKAVIAPGKGFRSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGAL 224
Query: 234 AQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
AQLNIETG+PINEIEPLVLFNV+FFF+AA+NPGTGKFV+D+DEE
Sbjct: 225 AQLNIETGVPINEIEPLVLFNVVFFFIAAINPGTGKFVSDDDEE 268
>gi|116778734|gb|ABK20973.1| unknown [Picea sitchensis]
Length = 297
Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 201/297 (67%), Positives = 229/297 (77%), Gaps = 21/297 (7%)
Query: 1 MAQTMLLMSGVSTSHAG----NLKR----DSLVTFQTQMLRPKPFSHLMFNPLSNESLTA 52
MAQ++L G+S+ AG N + +L + +RP + + ++PL+ E +A
Sbjct: 1 MAQSVLASGGLSSCVAGIAGFNQRPLPSPPALPVARGLRIRPPNAAQISWSPLT-ELPSA 59
Query: 53 AAASSSSKAFSTVALFKSKTKA--PPKT----------KKPKVEDGIFGTSGGFGFTKQN 100
AA +++ T ALF+ K KA PPK +KPKVEDGIFGTSGG GFTK N
Sbjct: 60 NAAGLNARIARTEALFRPKEKAAAPPKKGRTGRVALPEEKPKVEDGIFGTSGGIGFTKAN 119
Query: 101 ELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGAL 160
ELFVGRVAMIGFAASLLGE ITGKGIL+QLNLETGIPIYEAEPLLLFFILFTLLGAIGAL
Sbjct: 120 ELFVGRVAMIGFAASLLGEAITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGAL 179
Query: 161 GDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAF 220
GDRGKFVD+ TGL AVIPPGKG RSA+GL E GP+FGFTKSNELFVGRLAQLGIAF
Sbjct: 180 GDRGKFVDDQTPTTGLEKAVIPPGKGFRSAVGLNESGPLFGFTKSNELFVGRLAQLGIAF 239
Query: 221 SLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
S+IGEIITGKGALAQLNIETG+P++EIEPLVLFNV FF AALNPG GKFVTDE+EE
Sbjct: 240 SIIGEIITGKGALAQLNIETGVPVSEIEPLVLFNVAFFLFAALNPGNGKFVTDEEEE 296
>gi|326494250|dbj|BAJ90394.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326523967|dbj|BAJ96994.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 271
Score = 331 bits (848), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 202/282 (71%), Positives = 225/282 (79%), Gaps = 16/282 (5%)
Query: 1 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
MAQ+ML MSGV+ +G SL+ Q RP S + S A S
Sbjct: 1 MAQSML-MSGVNGVASGR----SLL----QAARPSSASTPFSRLALSSSSAAYYKHMPSL 51
Query: 61 AFSTVALF-KSKTKAPPKTK----KPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAAS 115
+ T+ALF KSKTKA P K KPK EDGIFGTSGG GFTK+NELFVGRVAMIGFAAS
Sbjct: 52 SVRTMALFGKSKTKAAPAKKVVAPKPKTEDGIFGTSGGIGFTKENELFVGRVAMIGFAAS 111
Query: 116 LLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTG 175
+LGE ITGKGIL+QLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG+FVDE +PTG
Sbjct: 112 ILGEAITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDE--QPTG 169
Query: 176 LGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQ 235
L AVI PGKG RSALGL EGGP+FGFTKSNELFVGRLAQLGIAFS+IGEIITGKGALAQ
Sbjct: 170 LDKAVIAPGKGFRSALGLSEGGPLFGFTKSNELFVGRLAQLGIAFSIIGEIITGKGALAQ 229
Query: 236 LNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
LNIETG+PI+EIEPLVLFNV+FFF+AA+NPGTGKF++ ED++
Sbjct: 230 LNIETGVPISEIEPLVLFNVVFFFIAAINPGTGKFISGEDDD 271
>gi|84620804|gb|ABC59516.1| chloroplast photosystem II 22 kDa component [Nicotiana benthamiana]
gi|186926676|gb|ACC95540.1| chloroplast photosystem II 22 kDa component [Nicotiana benthamiana]
Length = 277
Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 207/284 (72%), Positives = 232/284 (81%), Gaps = 14/284 (4%)
Query: 1 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
MAQTMLL + ++SLV + L+PKP S LS + +A+++SSSS
Sbjct: 1 MAQTMLLTANAKVDLR---SKESLV----ERLKPKPLSSFFLPSLSLKYPSASSSSSSSS 53
Query: 61 AF---STVALFKSKTKAPPKTKKPKVE----DGIFGTSGGFGFTKQNELFVGRVAMIGFA 113
+ +TVALFKSK KAP K PK + DGIFGTSGG GFTKQNELFVGRVAMIGFA
Sbjct: 54 SHFTSTTVALFKSKAKAPAKKVVPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFA 113
Query: 114 ASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEP 173
ASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGALGDRGKF+D+P P
Sbjct: 114 ASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFIDDPTPP 173
Query: 174 TGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL 233
TGL AVIPPGKG +SALGL EGGP+FGFTK+NELFVGRLAQLGIAFS+IGEIITGKGAL
Sbjct: 174 TGLDKAVIPPGKGFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGAL 233
Query: 234 AQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
AQLN ETG+PINEIEPL+LFN++FFFVAA+NPGTGKFVTDE+EE
Sbjct: 234 AQLNFETGVPINEIEPLLLFNIVFFFVAAINPGTGKFVTDEEEE 277
>gi|18203444|sp|Q9SMB4.1|PSBS_TOBAC RecName: Full=Photosystem II 22 kDa protein, chloroplastic;
AltName: Full=CP22; Flags: Precursor
gi|6103011|emb|CAA59007.1| precursor of photosystem II subunit (22KDa) [Nicotiana tabacum]
Length = 274
Score = 325 bits (832), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 203/281 (72%), Positives = 227/281 (80%), Gaps = 11/281 (3%)
Query: 1 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
MAQTMLL + ++SLV + L+PKP S L + +A+A++SS
Sbjct: 1 MAQTMLLTANAKVDLR---SKESLV----ERLKPKPLSSFFLPSLPLKYPSASASASSHF 53
Query: 61 AFSTVALFKSKTKAPPKTKKPKVE----DGIFGTSGGFGFTKQNELFVGRVAMIGFAASL 116
+TVALFKSK KAP K PK + DGIFGTSGG GFTKQNELFVGRVAMIGFAASL
Sbjct: 54 TSTTVALFKSKAKAPAKKVVPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASL 113
Query: 117 LGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGL 176
LGE ITGKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGAL DRGKF+D+P PTGL
Sbjct: 114 LGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALEDRGKFIDDPAPPTGL 173
Query: 177 GGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQL 236
AVIPPGKG +SALGL EGGP+F FTK+NELFVGRLAQLGIAFS+IGEIITGKGALAQL
Sbjct: 174 DKAVIPPGKGFKSALGLSEGGPLFEFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQL 233
Query: 237 NIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
N ETG+PINEIEPL+LFN++FFFVAA+NPGTGKFVTDE+EE
Sbjct: 234 NFETGVPINEIEPLLLFNIVFFFVAAINPGTGKFVTDEEEE 274
>gi|340002457|gb|AEK26371.1| chloroplast photosystem II subunit [Sedum alfredii]
Length = 273
Score = 323 bits (828), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 203/285 (71%), Positives = 224/285 (78%), Gaps = 20/285 (7%)
Query: 1 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
MAQ+ LLM + K S + Q Q L + + PL L + A+S
Sbjct: 1 MAQSTLLMFNGALP---TFKTHSSLQSQIQRLVKPNNNPFLQTPL----LHSKASSPLGL 53
Query: 61 AFSTVALFKS--------KTKAPPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGF 112
F+TVALFK+ +TK+ PK K VEDG+FGTSGG GFTKQNELFVGRVAMIGF
Sbjct: 54 GFTTVALFKAKAKAPAKKETKSKPKLK---VEDGVFGTSGGIGFTKQNELFVGRVAMIGF 110
Query: 113 AASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDE 172
AAS+LGE +TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG+FVD+P
Sbjct: 111 AASILGEAVTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDDP-- 168
Query: 173 PTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGA 232
PTGL AVIPPGKGLRSA GL EGGP+FGFTKSNELFVGRLAQLG AFSLIGEIITGKGA
Sbjct: 169 PTGLEKAVIPPGKGLRSAFGLSEGGPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKGA 228
Query: 233 LAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
LAQLNIETG+PINEIEPLVLFNVIFFF AALNPGTGKFVTD++E+
Sbjct: 229 LAQLNIETGVPINEIEPLVLFNVIFFFFAALNPGTGKFVTDDEED 273
>gi|84620802|gb|ABC59515.1| chloroplast photosystem II 22 kDa component [Nicotiana benthamiana]
Length = 274
Score = 322 bits (826), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 203/281 (72%), Positives = 227/281 (80%), Gaps = 11/281 (3%)
Query: 1 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
MAQTMLL + ++ LV + L+PKP S L + +A+++SSS
Sbjct: 1 MAQTMLLTANAKVDLR---NKEPLV----ERLKPKPLSSFFLPSLPLKYPSASSSSSSHF 53
Query: 61 AFSTVALFKSKTKAPPKTKKPKVE----DGIFGTSGGFGFTKQNELFVGRVAMIGFAASL 116
+TVALFKSK KAP K PK + DGIFGTSGG GFTKQNELFVGRVAMIGFAASL
Sbjct: 54 TSTTVALFKSKAKAPAKKVVPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASL 113
Query: 117 LGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGL 176
LGE ITGKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGALGDRGKF+D+P TGL
Sbjct: 114 LGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFIDDPVPATGL 173
Query: 177 GGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQL 236
AVIPPGKG +SALGL EGGP+FGFTK+NELFVGRLAQLGIAFS+IGEIITGKGALAQL
Sbjct: 174 DKAVIPPGKGFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQL 233
Query: 237 NIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
N ETG+PINEIEPL+LFN++FFFVAA+NPGTGKFVTDE+EE
Sbjct: 234 NFETGVPINEIEPLLLFNIVFFFVAAINPGTGKFVTDEEEE 274
>gi|15219418|ref|NP_175092.1| photosystem II 22 kDa protein [Arabidopsis thaliana]
gi|17380270|sp|Q9XF91.1|PSBS_ARATH RecName: Full=Photosystem II 22 kDa protein, chloroplastic;
AltName: Full=CP22; Flags: Precursor
gi|4741962|gb|AAD28778.1|AF134131_1 PsbS protein [Arabidopsis thaliana]
gi|13876505|gb|AAK43481.1|AC084807_6 photosystem II 22kDa protein, putative [Arabidopsis thaliana]
gi|62320751|dbj|BAD95419.1| Photosystem II chlorophyll-binding protein PsbS [Arabidopsis
thaliana]
gi|332193918|gb|AEE32039.1| photosystem II 22 kDa protein [Arabidopsis thaliana]
Length = 265
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 203/280 (72%), Positives = 223/280 (79%), Gaps = 19/280 (6%)
Query: 1 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
MAQTMLL SGV+ H + ++ + +PK H +F LS S A S +
Sbjct: 1 MAQTMLLTSGVTAGH--------FLRNKSPLAQPK--VHHLF--LSGNS--PVALPSRRQ 46
Query: 61 AFSTVALFKSKTKAPP---KTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLL 117
+F +ALFK KTKA P + K KVEDGIFGTSGG GFTK NELFVGRVAMIGFAASLL
Sbjct: 47 SFVPLALFKPKTKAAPKKVEKPKSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLL 106
Query: 118 GEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLG 177
GE +TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVD+P PTGL
Sbjct: 107 GEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDP--PTGLE 164
Query: 178 GAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLN 237
AVIPPGK +RSALGLKE GP+FGFTK+NELFVGRLAQLGIAFSLIGEIITGKGALAQLN
Sbjct: 165 KAVIPPGKNVRSALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLN 224
Query: 238 IETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
IETGIPI +IEPLVL NV FFF AA+NPG GKF+TD+ EE
Sbjct: 225 IETGIPIQDIEPLVLLNVAFFFFAAINPGNGKFITDDGEE 264
>gi|116790851|gb|ABK25763.1| unknown [Picea sitchensis]
Length = 294
Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 189/258 (73%), Positives = 208/258 (80%), Gaps = 17/258 (6%)
Query: 32 LRPKPFSHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKA--PPKT----------K 79
+RP + ++PL E +A AA +++ +TVALF+ K KA PPK +
Sbjct: 40 IRPPNAAETSWSPL-RELPSANAAGLNARTANTVALFRPKEKAAAPPKKGRTGRVSVPEE 98
Query: 80 KPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIY 139
KPKVEDGIFGTSGG GFTK NELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIY
Sbjct: 99 KPKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIY 158
Query: 140 EAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPI 199
EAEPLLLFFILFTLLGAIGALGDRGKFVDE P L + PGKG RSA+GLK+ GP+
Sbjct: 159 EAEPLLLFFILFTLLGAIGALGDRGKFVDEAPTPDSL----VDPGKGFRSAVGLKDSGPL 214
Query: 200 FGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFF 259
FGFTKSNELFVGRLAQLGIAFS+IGEIITGKGALAQLNIETG+P++EIEPLVLFNV FF
Sbjct: 215 FGFTKSNELFVGRLAQLGIAFSIIGEIITGKGALAQLNIETGVPVSEIEPLVLFNVAFFL 274
Query: 260 VAALNPGTGKFVTDEDEE 277
AALNPG GKFVTD DEE
Sbjct: 275 FAALNPGNGKFVTDVDEE 292
>gi|15294226|gb|AAK95290.1|AF410304_1 unknown protein [Arabidopsis thaliana]
gi|25090250|gb|AAN72262.1| At1g44575/T18F15 [Arabidopsis thaliana]
Length = 265
Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 202/280 (72%), Positives = 222/280 (79%), Gaps = 19/280 (6%)
Query: 1 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
MAQT LL SGV+ H + ++ + +PK H +F LS S A S +
Sbjct: 1 MAQTFLLTSGVTAGH--------FLRNKSPLAQPK--VHHLF--LSGNS--PVALPSRRQ 46
Query: 61 AFSTVALFKSKTKAPP---KTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLL 117
+F +ALFK KTKA P + K KVEDGIFGTSGG GFTK NELFVGRVAMIGFAASLL
Sbjct: 47 SFVPLALFKPKTKAAPKKVEKPKSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLL 106
Query: 118 GEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLG 177
GE +TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVD+P PTGL
Sbjct: 107 GEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDP--PTGLE 164
Query: 178 GAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLN 237
AVIPPGK +RSALGLKE GP+FGFTK+NELFVGRLAQLGIAFSLIGEIITGKGALAQLN
Sbjct: 165 KAVIPPGKNVRSALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLN 224
Query: 238 IETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
IETGIPI +IEPLVL NV FFF AA+NPG GKF+TD+ EE
Sbjct: 225 IETGIPIQDIEPLVLLNVAFFFFAAINPGNGKFITDDGEE 264
>gi|242055117|ref|XP_002456704.1| hypothetical protein SORBIDRAFT_03g041100 [Sorghum bicolor]
gi|241928679|gb|EES01824.1| hypothetical protein SORBIDRAFT_03g041100 [Sorghum bicolor]
Length = 268
Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 200/284 (70%), Positives = 219/284 (77%), Gaps = 23/284 (8%)
Query: 1 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
MAQ+ML+ STS G SL Q RP P+ L PL + S + S S
Sbjct: 1 MAQSMLM----STSVNGGRALPSL-----QAGRPAPYPRL---PLPSSS--SGYRHSKSV 46
Query: 61 AFSTVALF-KSKTKAPPKTKKPK------VEDGIFGTSGGFGFTKQNELFVGRVAMIGFA 113
+ T+ALF KSK K P K VEDGIFGTSGG GFTK+NELFVGRVAM+GFA
Sbjct: 47 SVKTLALFGKSKVKTAPSKKAAAPKPKPKVEDGIFGTSGGIGFTKENELFVGRVAMLGFA 106
Query: 114 ASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEP 173
ASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG+FVDE E
Sbjct: 107 ASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDE--EV 164
Query: 174 TGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL 233
TGL AVI PGKG R ALGL EGGP+FGFTKSNELFVGRLAQLG+AFS+IGEIITGKGAL
Sbjct: 165 TGLDKAVIQPGKGFRGALGLSEGGPLFGFTKSNELFVGRLAQLGVAFSIIGEIITGKGAL 224
Query: 234 AQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
AQLNIETG+PINEIEPLV+FNV+FFFVAA+NPG G+F+ EDEE
Sbjct: 225 AQLNIETGVPINEIEPLVIFNVLFFFVAAINPGNGRFIIGEDEE 268
>gi|255764547|gb|ACU33835.1| PsbS protein [Phyllostachys edulis]
Length = 269
Score = 316 bits (810), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 191/255 (74%), Positives = 208/255 (81%), Gaps = 15/255 (5%)
Query: 30 QMLRPKPFSHLMFNPLSNESLTAAAASSSSKAFSTVALF------KSKTKAPPKTK-KPK 82
+RP P S + + S S A S K TVALF K+ +TK K K
Sbjct: 23 HAVRPTPLSRFVLS--SQPSYCKRMAPLSVK---TVALFGGKSKAKAAPARKAETKPKFK 77
Query: 83 VEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAE 142
EDGIFGTSGG GFTK+NELFVGRVAM+GFAAS+LGE ITGKGILAQLNLETGIPIYEAE
Sbjct: 78 TEDGIFGTSGGIGFTKENELFVGRVAMLGFAASILGEAITGKGILAQLNLETGIPIYEAE 137
Query: 143 PLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGF 202
PLLLFFILFTLLGAIGALGDRG FVDEP TGL A++PPGKGLRSALGL EGGP+FGF
Sbjct: 138 PLLLFFILFTLLGAIGALGDRGSFVDEP---TGLDKAIVPPGKGLRSALGLGEGGPLFGF 194
Query: 203 TKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAA 262
TK+NELFVGRLAQLGIAFS+IGEIITGKGALAQLNIETG+PI+EIEPLVLFNVIFFFVAA
Sbjct: 195 TKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNIETGVPISEIEPLVLFNVIFFFVAA 254
Query: 263 LNPGTGKFVTDEDEE 277
+NPGTGKFVT +DEE
Sbjct: 255 INPGTGKFVTTDDEE 269
>gi|226504130|ref|NP_001150026.1| photosystem II 22 kDa protein [Zea mays]
gi|195636192|gb|ACG37564.1| photosystem II 22 kDa protein [Zea mays]
Length = 271
Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 196/283 (69%), Positives = 220/283 (77%), Gaps = 21/283 (7%)
Query: 2 AQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSKA 61
AQ+ML+ STS G SL Q +RP P+ L PL + S ++ S S +
Sbjct: 3 AQSMLM----STSVNGGRALPSL-----QAVRPAPYPRL---PLPSSSSSSGYRHSKSVS 50
Query: 62 FSTVALF-KSKTKAPPKTKKPK------VEDGIFGTSGGFGFTKQNELFVGRVAMIGFAA 114
T+ALF KSK K P K VEDGIFGTSGG GFTK+NELFVGRVAM+GFAA
Sbjct: 51 VKTLALFGKSKVKTAPAKKAAAPKPKPKVEDGIFGTSGGIGFTKENELFVGRVAMLGFAA 110
Query: 115 SLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPT 174
SLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG+FVDE E T
Sbjct: 111 SLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDE--EVT 168
Query: 175 GLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALA 234
GL AVI PGKG R ALGL EGGP+FGFTKSNELFVGR+AQLG+AFS+IGEIITGKGALA
Sbjct: 169 GLDKAVIQPGKGFRGALGLSEGGPLFGFTKSNELFVGRMAQLGVAFSIIGEIITGKGALA 228
Query: 235 QLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
QLNIETG+PINEIEPLV+FNV+FFF+AA+NPG G+F+ E+EE
Sbjct: 229 QLNIETGVPINEIEPLVIFNVLFFFIAAINPGNGRFIIGEEEE 271
>gi|414879500|tpg|DAA56631.1| TPA: photosystem II protein [Zea mays]
Length = 272
Score = 313 bits (801), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 197/284 (69%), Positives = 221/284 (77%), Gaps = 22/284 (7%)
Query: 2 AQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAA-ASSSSK 60
AQ+ML+ STS G SL Q +RP P+ L PL + S ++A S S
Sbjct: 3 AQSMLM----STSVNGGRALPSL-----QAVRPAPYPRL---PLPSSSSSSAGYRHSKSV 50
Query: 61 AFSTVALF-KSKTKAPPKTKKPK------VEDGIFGTSGGFGFTKQNELFVGRVAMIGFA 113
+ T+ALF KSK K P K VEDGIFGTSGG GFTK+NELFVGRVAM+GFA
Sbjct: 51 SVKTLALFGKSKVKTAPAKKAAAPKPKPKVEDGIFGTSGGIGFTKENELFVGRVAMLGFA 110
Query: 114 ASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEP 173
ASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG+FVDE E
Sbjct: 111 ASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDE--EV 168
Query: 174 TGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL 233
TGL AVI PGKG R ALGL EGGP+FGFTKSNELFVGR+AQLG+AFS+IGEIITGKGAL
Sbjct: 169 TGLDKAVIQPGKGFRGALGLSEGGPLFGFTKSNELFVGRMAQLGVAFSIIGEIITGKGAL 228
Query: 234 AQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
AQLNIETG+PINEIEPLV+FNV+FFF+AA+NPG G+F+ E+EE
Sbjct: 229 AQLNIETGVPINEIEPLVIFNVLFFFIAAINPGNGRFIIGEEEE 272
>gi|297846822|ref|XP_002891292.1| hypothetical protein ARALYDRAFT_891398 [Arabidopsis lyrata subsp.
lyrata]
gi|297337134|gb|EFH67551.1| hypothetical protein ARALYDRAFT_891398 [Arabidopsis lyrata subsp.
lyrata]
Length = 265
Score = 309 bits (792), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 201/280 (71%), Positives = 222/280 (79%), Gaps = 19/280 (6%)
Query: 1 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
MAQTMLL SGVS AG R+ ++ + +PK H +F LS S S +
Sbjct: 1 MAQTMLLTSGVS---AGQFLRN-----KSPLAQPK--VHHLF--LSGNS--PVVLPSRRQ 46
Query: 61 AFSTVALFKSKTKAPPKTKKPKVE---DGIFGTSGGFGFTKQNELFVGRVAMIGFAASLL 117
+F +ALFK KTKA PK + + DGIFGTSGG GFTK NELFVGRVAMIGFAASLL
Sbjct: 47 SFVPLALFKPKTKAAPKKVEKPKKKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLL 106
Query: 118 GEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLG 177
GE +TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG+FVD+P PTGL
Sbjct: 107 GEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGQFVDDP--PTGLE 164
Query: 178 GAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLN 237
AVIPPGK +RSALGLKE GP+FGFTK+NELFVGRLAQLGIAFSLIGEIITGKGALAQLN
Sbjct: 165 KAVIPPGKNVRSALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLN 224
Query: 238 IETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
IETGIPI +IEPLVL NV FFF AA+NPG GKF+TD+ EE
Sbjct: 225 IETGIPIQDIEPLVLLNVAFFFFAAINPGNGKFITDDGEE 264
>gi|162463509|ref|NP_001105228.1| photosystem II subunit PsbS1 [Zea mays]
gi|33867383|gb|AAQ55066.1| photosystem II subunit PsbS precursor [Zea mays]
Length = 265
Score = 309 bits (791), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 193/275 (70%), Positives = 216/275 (78%), Gaps = 18/275 (6%)
Query: 11 VSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAA-ASSSSKAFSTVALF- 68
+STS G SL Q +RP P+ L PL + S ++A S S + T+ALF
Sbjct: 1 MSTSVNGGRALPSL-----QAVRPAPYPRL---PLPSSSSSSAGYRHSKSVSVKTLALFG 52
Query: 69 KSKTKAPPKTKKPK------VEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGIT 122
KSK K P K VEDGIFGTSGG GFTK+NELFVGRVAM+GFAASLLGE IT
Sbjct: 53 KSKVKTAPAKKAAAPKPKPKVEDGIFGTSGGIGFTKENELFVGRVAMLGFAASLLGEAIT 112
Query: 123 GKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIP 182
GKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG+FVDE E TGL AVI
Sbjct: 113 GKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDE--EVTGLDKAVIQ 170
Query: 183 PGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGI 242
PGKG R ALGL EGGP+FGFTKSNELFVGR+AQLG+AFS+IGEIITGKGALAQLNIETG+
Sbjct: 171 PGKGFRGALGLSEGGPLFGFTKSNELFVGRMAQLGVAFSIIGEIITGKGALAQLNIETGV 230
Query: 243 PINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
PINEIEPLV+FNV+FFF+AA+NPG G+F+ E+EE
Sbjct: 231 PINEIEPLVIFNVLFFFIAAINPGNGRFIIGEEEE 265
>gi|1709846|sp|P54773.1|PSBS_SOLLC RecName: Full=Photosystem II 22 kDa protein, chloroplastic;
AltName: Full=CP22; Flags: Precursor
gi|706853|gb|AAA63649.1| 22 kDa component of photosystem II [Solanum lycopersicum]
Length = 276
Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 207/284 (72%), Positives = 229/284 (80%), Gaps = 15/284 (5%)
Query: 1 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
MAQTMLL + ++SLV + L+PKP S L L +++ +SSSK
Sbjct: 1 MAQTMLLTANAKVDLR---SKESLV----ERLKPKPLSSLFLPSLPLRFSSSSTNASSSK 53
Query: 61 AFST-VALFKSKTK------APPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFA 113
ST VALFKSK K APPK K+ KVEDGIFGTSGG GFTKQNELFVGRVAMIGFA
Sbjct: 54 FTSTTVALFKSKAKAPPKKVAPPKEKQ-KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFA 112
Query: 114 ASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEP 173
ASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGALGDRGKFVD+P P
Sbjct: 113 ASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDDPTPP 172
Query: 174 TGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL 233
TGL AVIPPGK +SALGL EGGP+FGFTK+NELFVGRLAQLGIAFS+IGEIITGKGAL
Sbjct: 173 TGLEKAVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGAL 232
Query: 234 AQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
AQLN ETG+PINEIEPL+LFN+ FFF AA+NPGTGKF+TDE+E+
Sbjct: 233 AQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276
>gi|295824589|gb|ABF72923.2| chloroplast chlorophyll a/b-binding protein [Solanum nigrum]
gi|295824591|gb|ABF72924.2| chloroplast chlorophyll a/b-binding protein [Solanum nigrum]
Length = 276
Score = 306 bits (785), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 206/284 (72%), Positives = 229/284 (80%), Gaps = 15/284 (5%)
Query: 1 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
MAQTMLL + ++SLV + L+PKP S L L +++ +SSSK
Sbjct: 1 MAQTMLLTANAKVDLR---SKESLV----ERLKPKPLSSLFLPSLPLRFSSSSTNASSSK 53
Query: 61 AFST-VALFKSKTK------APPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFA 113
ST VALFKSK K APPK K+ KVEDGIFGTSGG GFTKQNELFVGRVAMIGFA
Sbjct: 54 FTSTTVALFKSKAKAPPKKVAPPKQKE-KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFA 112
Query: 114 ASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEP 173
ASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGALGDRGKFVD+P P
Sbjct: 113 ASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDDPAPP 172
Query: 174 TGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL 233
TGL AVIPPG+ +SALGL EGGP+FGFTK+NELFVGRLAQLGIAFS+IGEIITGKGAL
Sbjct: 173 TGLEKAVIPPGRSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGAL 232
Query: 234 AQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
AQLN ETG+PINEIEPL+LFN+ FFF AA+NPGTGKF+TDE+E+
Sbjct: 233 AQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276
>gi|312281657|dbj|BAJ33694.1| unnamed protein product [Thellungiella halophila]
Length = 267
Score = 306 bits (784), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 195/280 (69%), Positives = 216/280 (77%), Gaps = 17/280 (6%)
Query: 1 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
MAQTM+L SGVS + + + + +PK H +F LS S S +
Sbjct: 1 MAQTMMLTSGVSANQ--------FLRNKNPLAQPK--VHHLF--LSGNS--PVVIPSRRQ 46
Query: 61 AFSTVALFKSKTKAPPKTKKPKVE---DGIFGTSGGFGFTKQNELFVGRVAMIGFAASLL 117
+ +ALFK KTKA PK + DGIFGTSGG GFTK NELFVGRVAMIGFAASLL
Sbjct: 47 SLVPLALFKPKTKAAPKKVEKVKPKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLL 106
Query: 118 GEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLG 177
GE +TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVD+P PTGL
Sbjct: 107 GEAVTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDPPTPTGLE 166
Query: 178 GAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLN 237
AVI PGK +RSALGLKE GP+FGFTK+NELFVGRLAQLGIAFSLIGEIITGKGALAQLN
Sbjct: 167 KAVIAPGKNVRSALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLN 226
Query: 238 IETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
IETGIPI +IEPLVL NV FFF AA+NPG GKF+TD+ E+
Sbjct: 227 IETGIPIQDIEPLVLLNVAFFFFAAINPGNGKFITDDGED 266
>gi|18202913|sp|Q9FPP4.1|PSBS_SOLSG RecName: Full=Photosystem II 22 kDa protein, chloroplastic;
AltName: Full=CP22; Flags: Precursor
gi|12082782|gb|AAG48610.1|AF311720_1 photosystem II 22 kDa protein precursor [Solanum sogarandinum]
Length = 276
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 204/284 (71%), Positives = 226/284 (79%), Gaps = 15/284 (5%)
Query: 1 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
MAQTMLL + ++SLV + L+PKP S L L ++ SSSK
Sbjct: 1 MAQTMLLTANAKVDLR---SKESLV----ERLKPKPLSSLFLPSLPLRFSSSTTNFSSSK 53
Query: 61 AFST-VALFKSKTK------APPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFA 113
ST VALFKSK K APPK K+ KVEDGIFGTSGG GFTKQNELFVGRVAMIGFA
Sbjct: 54 FTSTTVALFKSKAKAPPKKVAPPKEKQ-KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFA 112
Query: 114 ASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEP 173
ASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGALGDRG+F+D+P
Sbjct: 113 ASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDDPAPA 172
Query: 174 TGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL 233
TGL AVIPPGK +SALGL EGGP+FGFTK+NELFVGRLAQLGIAFS+IGEIITGKGAL
Sbjct: 173 TGLEKAVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGAL 232
Query: 234 AQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
AQLN ETG+PINEIEPL+LFN+ FFF AA+NPGTGKF+TDE+E+
Sbjct: 233 AQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276
>gi|302783280|ref|XP_002973413.1| LHC-related protein [Selaginella moellendorffii]
gi|300159166|gb|EFJ25787.1| LHC-related protein [Selaginella moellendorffii]
Length = 266
Score = 303 bits (775), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 171/224 (76%), Positives = 192/224 (85%), Gaps = 11/224 (4%)
Query: 56 SSSSKAFSTVALFKSKTKAPPKTKKPK--VEDGIFGTSGGFGFTKQNELFVGRVAMIGFA 113
SS+S+ T AL K+KAP +KK K VEDGIFGTSGG GFTKQNELFVGRVAMIGFA
Sbjct: 52 SSASRIVRTFAL---KSKAPATSKKSKSTVEDGIFGTSGGIGFTKQNELFVGRVAMIGFA 108
Query: 114 ASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEP 173
ASLLGE ITGKG+LAQ +LETGIP+ E EPLLLFFILFTLLGAIGALGDRGKFVDE P
Sbjct: 109 ASLLGEAITGKGVLAQFDLETGIPLNETEPLLLFFILFTLLGAIGALGDRGKFVDETPGP 168
Query: 174 TGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL 233
+I PGKG +SA+GLKE GP+FGFTKSNELFVGRLAQLGIAFS+IGE+ITGKGAL
Sbjct: 169 ------IIEPGKGFKSAIGLKEKGPVFGFTKSNELFVGRLAQLGIAFSIIGELITGKGAL 222
Query: 234 AQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
AQLNIETG+PI EIEPL+LFN+IFFF+AA+NPGTG+F+ D +EE
Sbjct: 223 AQLNIETGVPITEIEPLLLFNIIFFFIAAINPGTGRFIADNEEE 266
>gi|302789452|ref|XP_002976494.1| LHC-related protein [Selaginella moellendorffii]
gi|300155532|gb|EFJ22163.1| LHC-related protein [Selaginella moellendorffii]
Length = 266
Score = 303 bits (775), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 171/224 (76%), Positives = 192/224 (85%), Gaps = 11/224 (4%)
Query: 56 SSSSKAFSTVALFKSKTKAPPKTKKPK--VEDGIFGTSGGFGFTKQNELFVGRVAMIGFA 113
SS+S+ T AL K+KAP +KK K VEDGIFGTSGG GFTKQNELFVGRVAMIGFA
Sbjct: 52 SSASRIVRTFAL---KSKAPATSKKSKSTVEDGIFGTSGGIGFTKQNELFVGRVAMIGFA 108
Query: 114 ASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEP 173
ASLLGE ITGKG+LAQ +LETGIP+ E EPLLLFFILFTLLGAIGALGDRGKFVDE P
Sbjct: 109 ASLLGEAITGKGVLAQFDLETGIPLNETEPLLLFFILFTLLGAIGALGDRGKFVDETPGP 168
Query: 174 TGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL 233
+I PGKG +SA+GLKE GP+FGFTKSNELFVGRLAQLGIAFS+IGE+ITGKGAL
Sbjct: 169 ------IIEPGKGFKSAIGLKEKGPVFGFTKSNELFVGRLAQLGIAFSIIGELITGKGAL 222
Query: 234 AQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
AQLNIETG+PI EIEPL+LFN+IFFF+AA+NPGTG+F+ D +EE
Sbjct: 223 AQLNIETGVPITEIEPLLLFNIIFFFIAAINPGTGRFIADNEEE 266
>gi|115461508|ref|NP_001054354.1| Os04g0690800 [Oryza sativa Japonica Group]
gi|113565925|dbj|BAF16268.1| Os04g0690800 [Oryza sativa Japonica Group]
Length = 254
Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 179/223 (80%), Positives = 197/223 (88%), Gaps = 8/223 (3%)
Query: 60 KAFSTVALFKSKTKAPPKTKKPK-----VEDGIFGTSGGFGFTKQNELFVGRVAMIGFAA 114
K VA FKS+TKA PK K VEDGIFGTSGG GFTK+NELFVGRVAM+GFAA
Sbjct: 34 KHLVVVAAFKSRTKASPKVDKSNKNKSIVEDGIFGTSGGIGFTKENELFVGRVAMLGFAA 93
Query: 115 SLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPT 174
SLLGE +TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG+FVD+ T
Sbjct: 94 SLLGEAVTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDDA---T 150
Query: 175 GLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALA 234
GL AVIPPGKG R+ALGL EGGP+FGFTK+NELFVGRLAQLGIAFSLIGEIITGKGALA
Sbjct: 151 GLERAVIPPGKGFRAALGLSEGGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALA 210
Query: 235 QLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
QLNIETG+PINEIEPL+LFN++FFF AA+NPGTGKFVTD++++
Sbjct: 211 QLNIETGVPINEIEPLLLFNILFFFFAAINPGTGKFVTDDNDD 253
>gi|38345525|emb|CAE01809.2| OSJNBa0039K24.28 [Oryza sativa Japonica Group]
gi|125592162|gb|EAZ32512.1| hypothetical protein OsJ_16732 [Oryza sativa Japonica Group]
Length = 248
Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 179/223 (80%), Positives = 197/223 (88%), Gaps = 8/223 (3%)
Query: 60 KAFSTVALFKSKTKAPPKTKKPK-----VEDGIFGTSGGFGFTKQNELFVGRVAMIGFAA 114
K VA FKS+TKA PK K VEDGIFGTSGG GFTK+NELFVGRVAM+GFAA
Sbjct: 28 KHLVVVAAFKSRTKASPKVDKSNKNKSIVEDGIFGTSGGIGFTKENELFVGRVAMLGFAA 87
Query: 115 SLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPT 174
SLLGE +TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG+FVD+ T
Sbjct: 88 SLLGEAVTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDDA---T 144
Query: 175 GLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALA 234
GL AVIPPGKG R+ALGL EGGP+FGFTK+NELFVGRLAQLGIAFSLIGEIITGKGALA
Sbjct: 145 GLERAVIPPGKGFRAALGLSEGGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALA 204
Query: 235 QLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
QLNIETG+PINEIEPL+LFN++FFF AA+NPGTGKFVTD++++
Sbjct: 205 QLNIETGVPINEIEPLLLFNILFFFFAAINPGTGKFVTDDNDD 247
>gi|90399255|emb|CAH68096.1| B0518A01.1 [Oryza sativa Indica Group]
gi|116311997|emb|CAJ86355.1| H0814G11.22 [Oryza sativa Indica Group]
gi|125550332|gb|EAY96154.1| hypothetical protein OsI_18034 [Oryza sativa Indica Group]
Length = 248
Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 179/223 (80%), Positives = 197/223 (88%), Gaps = 8/223 (3%)
Query: 60 KAFSTVALFKSKTKAPPKTKKPK-----VEDGIFGTSGGFGFTKQNELFVGRVAMIGFAA 114
K VA FKS+TKA PK K VEDGIFGTSGG GFTK+NELFVGRVAM+GFAA
Sbjct: 28 KHLVVVAAFKSRTKASPKVDKSNKNKSIVEDGIFGTSGGIGFTKENELFVGRVAMLGFAA 87
Query: 115 SLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPT 174
SLLGE +TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG+FVD+ T
Sbjct: 88 SLLGEAVTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDDA---T 144
Query: 175 GLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALA 234
GL AVIPPGKG R+ALGL EGGP+FGFTK+NELFVGRLAQLGIAFSLIGEIITGKGALA
Sbjct: 145 GLERAVIPPGKGFRAALGLSEGGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALA 204
Query: 235 QLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
QLNIETG+PINEIEPL+LFN++FFF AA+NPGTGKFVTD++++
Sbjct: 205 QLNIETGVPINEIEPLLLFNILFFFFAAINPGTGKFVTDDNDD 247
>gi|1304215|dbj|BAA12337.1| 22 kDa protein of photosystem II precursor [Oryza sativa Japonica
Group]
Length = 254
Score = 299 bits (766), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 177/223 (79%), Positives = 196/223 (87%), Gaps = 8/223 (3%)
Query: 60 KAFSTVALFKSKTKAPPKTKKPK-----VEDGIFGTSGGFGFTKQNELFVGRVAMIGFAA 114
K VA FKS+TKA PK K VEDGIFGTSGG GFTK+NELFVGRVAM+GFAA
Sbjct: 34 KHLVVVAAFKSRTKASPKVDKSNKNKSIVEDGIFGTSGGIGFTKENELFVGRVAMLGFAA 93
Query: 115 SLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPT 174
SLLGE +TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG+FVD+ T
Sbjct: 94 SLLGEAVTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDDA---T 150
Query: 175 GLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALA 234
GL AVIPPGKG R+ALGL EGGP+FGFTK+NELFVGRLA +GIAFSLIGEIITGKGALA
Sbjct: 151 GLERAVIPPGKGFRAALGLSEGGPLFGFTKANELFVGRLAHVGIAFSLIGEIITGKGALA 210
Query: 235 QLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
QLNIETG+PINEIEPL+LFN++FFF AA+NPGTGKFVTD++++
Sbjct: 211 QLNIETGVPINEIEPLLLFNILFFFFAAINPGTGKFVTDDNDD 253
>gi|104569511|gb|ABF72925.1| chloroplast chlorophyll a/b-binding protein, partial [Solanum
nigrum]
gi|104569543|gb|ABF72926.1| chloroplast chlorophyll a/b-binding protein [Solanum nigrum]
Length = 268
Score = 293 bits (751), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 201/276 (72%), Positives = 221/276 (80%), Gaps = 15/276 (5%)
Query: 1 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
MAQTMLL + ++SLV + L+PKP S L L +++ +SSSK
Sbjct: 1 MAQTMLLTANAKVDLR---SKESLV----ERLKPKPLSSLFLPSLPLRFSSSSTNASSSK 53
Query: 61 AFST-VALFKSKTK------APPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFA 113
ST VALFKSK K APPK K+ KVEDGIFGTSGG GFTKQNELFVGRVAMIGFA
Sbjct: 54 FTSTTVALFKSKAKAPPKKVAPPKQKE-KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFA 112
Query: 114 ASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEP 173
ASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGALGDRGKFVD+P P
Sbjct: 113 ASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDDPAPP 172
Query: 174 TGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL 233
TGL AVIPPG+ +SALGL EGGP+FGFTK+NELFVGRLAQLGIAFS+IGEIITGKGAL
Sbjct: 173 TGLEKAVIPPGRSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGAL 232
Query: 234 AQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGK 269
AQLN ETG+PINEIEPL+LFN+ FFF AA+NPGTGK
Sbjct: 233 AQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTGK 268
>gi|168052249|ref|XP_001778563.1| photosystem II 22kDa chloroplast protein [Physcomitrella patens
subsp. patens]
gi|162670017|gb|EDQ56593.1| photosystem II 22kDa chloroplast protein [Physcomitrella patens
subsp. patens]
Length = 279
Score = 291 bits (744), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 172/233 (73%), Positives = 189/233 (81%), Gaps = 7/233 (3%)
Query: 50 LTAAAASSSSKAFSTVALF---KSKTKAPPKTK-KPKVEDGIFGTSGGFGFTKQNELFVG 105
L A SS A T ALF K KAP TK K KVEDGIFGTSGG GFTK NELFVG
Sbjct: 48 LNRNAERVSSGAVKTFALFGKTKPAAKAPAPTKGKAKVEDGIFGTSGGIGFTKANELFVG 107
Query: 106 RVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGK 165
RVAM+GFAAS+LGE +TGKG LAQ ++ETGIP+ E EPLLLFFILFTLLGAIGALGDRGK
Sbjct: 108 RVAMLGFAASILGEALTGKGTLAQFDIETGIPLTETEPLLLFFILFTLLGAIGALGDRGK 167
Query: 166 FVDEPDEPT-GLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIG 224
FVD D P GL +I PGKG++ ALGL E GP+FGFTKSNELFVGRLAQLGIAF++IG
Sbjct: 168 FVD--DAPVAGLDSTIIKPGKGVKGALGLNEKGPVFGFTKSNELFVGRLAQLGIAFAIIG 225
Query: 225 EIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
EIITGKGALAQLNIETG+PI E+EPL+LFNVIFF AA+NPGTGKFV D+D E
Sbjct: 226 EIITGKGALAQLNIETGVPITELEPLILFNVIFFLFAAVNPGTGKFVNDDDIE 278
>gi|357126063|ref|XP_003564708.1| PREDICTED: photosystem II 22 kDa protein, chloroplastic-like
[Brachypodium distachyon]
Length = 269
Score = 283 bits (724), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 191/279 (68%), Positives = 216/279 (77%), Gaps = 12/279 (4%)
Query: 1 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPK--PFSHLMFNPLSNESLTAAAASSS 58
MAQ+ML+ S + +G SL+ Q RP PFS L + + S
Sbjct: 1 MAQSMLMSSVNGVASSGR----SLL----QAARPAATPFSRLALPASPSYYKHMPSLSVR 52
Query: 59 SKAFSTVALFKSKTKAPPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLG 118
+ A + K+ KPK EDGIFGTSGG GFTK+NELFVGRVAMIGFAAS+LG
Sbjct: 53 TMAIFGKSKAKAAPAKKVAAPKPKTEDGIFGTSGGIGFTKENELFVGRVAMIGFAASILG 112
Query: 119 EGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLGG 178
E ITGKGIL+QLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDE +PTGL
Sbjct: 113 EAITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDE--QPTGLDK 170
Query: 179 AVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNI 238
AVI PGKG RSALGL EGGP+FGFTKSNELFVGRLAQLGIAFS+IGEIITGKGALAQLNI
Sbjct: 171 AVIAPGKGFRSALGLSEGGPLFGFTKSNELFVGRLAQLGIAFSIIGEIITGKGALAQLNI 230
Query: 239 ETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
ETG+PI+EIEPLVLFNV+FFFVAA+NPGTGKF++ E+++
Sbjct: 231 ETGVPISEIEPLVLFNVVFFFVAAINPGTGKFISGEEDD 269
>gi|71063184|gb|AAZ22183.1| PSII subunit PsbS [Xerophyta humilis]
Length = 159
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 137/159 (86%), Positives = 149/159 (93%)
Query: 104 VGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDR 163
VGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDR
Sbjct: 1 VGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDR 60
Query: 164 GKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLI 223
GKFVD+P PTGL AVIPPGKG+R+ALGL GP+FGFTK+NELFVGRLAQLGIAFSLI
Sbjct: 61 GKFVDDPPPPTGLERAVIPPGKGIRAALGLNSDGPLFGFTKANELFVGRLAQLGIAFSLI 120
Query: 224 GEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAA 262
GE+ITGKGALAQLNIETG+PI++IEPL+L N+ FFF+AA
Sbjct: 121 GEVITGKGALAQLNIETGVPISDIEPLLLLNIAFFFLAA 159
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 49/63 (77%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTL 153
FGFTK NELFVGR+A +G A SL+GE ITGKG LAQLN+ETG+PI + EPLLL I F
Sbjct: 97 FGFTKANELFVGRLAQLGIAFSLIGEVITGKGALAQLNIETGVPISDIEPLLLLNIAFFF 156
Query: 154 LGA 156
L A
Sbjct: 157 LAA 159
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Query: 210 VGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNP--GT 267
VGR+A +G A SL+GE ITGKG LAQLN+ETGIPI E EPL+LF ++F + A+
Sbjct: 1 VGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDR 60
Query: 268 GKFVTD 273
GKFV D
Sbjct: 61 GKFVDD 66
>gi|6006279|dbj|BAA84769.1| photosystem II 22 kDa protein [Arabidopsis thaliana]
Length = 155
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 136/156 (87%), Positives = 144/156 (92%), Gaps = 2/156 (1%)
Query: 122 TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVI 181
TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVD+P PTGL AVI
Sbjct: 1 TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDP--PTGLEKAVI 58
Query: 182 PPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETG 241
PPGK +RSALGLKE GP+FGFTK+NELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETG
Sbjct: 59 PPGKNVRSALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETG 118
Query: 242 IPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
IPI +IEPLVL NV FFF AA+NPG GKF+TD+ EE
Sbjct: 119 IPIQDIEPLVLLNVAFFFFAAINPGNGKFITDDGEE 154
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 55/79 (69%), Gaps = 2/79 (2%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTL 153
FGFTK NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI + EPL+L + F
Sbjct: 77 FGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEPLVLLNVAFFF 136
Query: 154 LGAIGALGDRGKFVDEPDE 172
AI GKF+ + E
Sbjct: 137 FAAINP--GNGKFITDDGE 153
>gi|306476221|gb|ADM89004.1| chloroplast chlorophyll a/b-binding photosystem II 22kDa subunit S
[Coffea arabica]
Length = 118
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/121 (85%), Positives = 112/121 (92%), Gaps = 3/121 (2%)
Query: 101 ELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGAL 160
ELFVGRVAM+GFAAS+LGE ITGKGILAQLNLETGIPIYEAEPLLL FILF LLGAIGAL
Sbjct: 1 ELFVGRVAMLGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLCFILFNLLGAIGAL 60
Query: 161 GDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAF 220
GDRG+FVD D P G+ GAV+PPGKGLR ALGL+EGGP+FGFTK+NELFVGRLAQLGIAF
Sbjct: 61 GDRGRFVD--DAP-GIEGAVVPPGKGLRGALGLREGGPLFGFTKANELFVGRLAQLGIAF 117
Query: 221 S 221
S
Sbjct: 118 S 118
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 50/69 (72%), Gaps = 2/69 (2%)
Query: 207 ELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNP- 265
ELFVGR+A LG A S++GE ITGKG LAQLN+ETGIPI E EPL+L ++F + A+
Sbjct: 1 ELFVGRVAMLGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLCFILFNLLGAIGAL 60
Query: 266 -GTGKFVTD 273
G+FV D
Sbjct: 61 GDRGRFVDD 69
>gi|42571761|ref|NP_973971.1| photosystem II 22 kDa protein [Arabidopsis thaliana]
gi|332193919|gb|AEE32040.1| photosystem II 22 kDa protein [Arabidopsis thaliana]
Length = 205
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 135/200 (67%), Positives = 149/200 (74%), Gaps = 19/200 (9%)
Query: 1 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
MAQTMLL SGV+ H + ++ + +PK H +F LS S A S +
Sbjct: 1 MAQTMLLTSGVTAGH--------FLRNKSPLAQPK--VHHLF--LSGNS--PVALPSRRQ 46
Query: 61 AFSTVALFKSKTKAPP---KTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLL 117
+F +ALFK KTKA P + K KVEDGIFGTSGG GFTK NELFVGRVAMIGFAASLL
Sbjct: 47 SFVPLALFKPKTKAAPKKVEKPKSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLL 106
Query: 118 GEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLG 177
GE +TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVD+P PTGL
Sbjct: 107 GEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDP--PTGLE 164
Query: 178 GAVIPPGKGLRSALGLKEGG 197
AVIPPGK +RSALGLKE G
Sbjct: 165 KAVIPPGKNVRSALGLKEQG 184
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 2/75 (2%)
Query: 201 GFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFV 260
GFTK+NELFVGR+A +G A SL+GE +TGKG LAQLN+ETGIPI E EPL+LF ++F +
Sbjct: 84 GFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLL 143
Query: 261 AALNP--GTGKFVTD 273
A+ GKFV D
Sbjct: 144 GAIGALGDRGKFVDD 158
>gi|351720766|ref|NP_001238211.1| uncharacterized protein LOC100305885 [Glycine max]
gi|255626883|gb|ACU13786.1| unknown [Glycine max]
Length = 190
Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 112/198 (56%), Positives = 137/198 (69%), Gaps = 16/198 (8%)
Query: 1 MAQTMLLMSGV----STSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAAS 56
MAQT+L +S S +++ +LK+DSL+ Q Q LRPK SHL F PL + S + +++S
Sbjct: 1 MAQTVLFLSSSTVPGSANYSIDLKKDSLIHLQNQGLRPK-ISHLFFVPLPSASYSFSSSS 59
Query: 57 SSSKAFSTVALFKSKTKAPPKTKKPKV--EDGIFGTSGGFGFTKQNELFVGRVAMIGFAA 114
S + + +A FK+KT + KPK ED IFG+SGGFGFTK NELFVGRVAM+GF+A
Sbjct: 60 SRT-FITALAFFKTKTPSKVVKSKPKPKVEDAIFGSSGGFGFTKVNELFVGRVAMLGFSA 118
Query: 115 SLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPT 174
LGE ITGKGI+AQLNLETG+PIYEA +LFTLLGAIGAL RGKF+ D PT
Sbjct: 119 PSLGEAITGKGIIAQLNLETGMPIYEA------LLLFTLLGAIGALVYRGKFLY--DLPT 170
Query: 175 GLGGAVIPPGKGLRSALG 192
L AVIPPGKGL G
Sbjct: 171 ELNKAVIPPGKGLSEGQG 188
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 52/78 (66%), Gaps = 4/78 (5%)
Query: 200 FGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFF 259
FGFTK NELFVGR+A LG + +GE ITGKG +AQLN+ETG+PI E L+LF ++
Sbjct: 98 FGFTKVNELFVGRVAMLGFSAPSLGEAITGKGIIAQLNLETGMPI--YEALLLFTLLGAI 155
Query: 260 VAALNPGTGKFVTDEDEE 277
A + GKF+ D E
Sbjct: 156 GALVY--RGKFLYDLPTE 171
>gi|145079474|tpg|DAA05916.1| TPA_inf: chloroplast photosystem II 22 kDa PsbS protein precursor
psbS [Acetabularia acetabulum]
Length = 242
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 97/184 (52%), Positives = 130/184 (70%), Gaps = 11/184 (5%)
Query: 95 GFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLL 154
GFTK NELFVGR+AMIGFA++++GE +TGKG LAQ LETGIPI + EPL++ ++F L+
Sbjct: 66 GFTKSNELFVGRLAMIGFASAIIGELLTGKGALAQFGLETGIPITDTEPLVIGLVIFNLV 125
Query: 155 GAIGALGDRGKFV-DEPDEPTGLGGAVIPPGKGL---RSALGLKEGGPIFGFTKSNELFV 210
A+ L +G FV + +E G G++ P + + G+ FGFTK+NELFV
Sbjct: 126 AAL--LPAKGVFVPSDEEEEEGPKGSLQDPSISILQPQKFFGISG----FGFTKANELFV 179
Query: 211 GRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKF 270
GR+AQLG AF+LIGE ITGKG LAQ +IETG+P+ + EPL+L + F AA+N G+G+F
Sbjct: 180 GRVAQLGFAFALIGEAITGKGPLAQFDIETGLPLADTEPLLLVFIAFTLFAAINEGSGRF 239
Query: 271 VTDE 274
TDE
Sbjct: 240 -TDE 242
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/78 (66%), Positives = 62/78 (79%), Gaps = 1/78 (1%)
Query: 201 GFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFV 260
GFTKSNELFVGRLA +G A ++IGE++TGKGALAQ +ETGIPI + EPLV+ VIF V
Sbjct: 66 GFTKSNELFVGRLAMIGFASAIIGELLTGKGALAQFGLETGIPITDTEPLVIGLVIFNLV 125
Query: 261 AALNPGTGKFV-TDEDEE 277
AAL P G FV +DE+EE
Sbjct: 126 AALLPAKGVFVPSDEEEE 143
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/82 (63%), Positives = 61/82 (74%), Gaps = 3/82 (3%)
Query: 88 FGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLF 147
FG SG FGFTK NELFVGRVA +GFA +L+GE ITGKG LAQ ++ETG+P+ + EPLLL
Sbjct: 164 FGISG-FGFTKANELFVGRVAQLGFAFALIGEAITGKGPLAQFDIETGLPLADTEPLLLV 222
Query: 148 FILFTLLGAIGALGDRGKFVDE 169
FI FTL AI G+F DE
Sbjct: 223 FIAFTLFAAINE--GSGRFTDE 242
>gi|145079494|tpg|DAA05917.1| TPA_inf: chloroplast photosystem II 22 kDa PsbS protein precursor
psbS [Acetabularia acetabulum]
Length = 243
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 97/178 (54%), Positives = 125/178 (70%), Gaps = 6/178 (3%)
Query: 95 GFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLL 154
GFTK NELFVGR+AMIGFA++++GE +TGKG LAQ LETGIPI + EPL++ ++F L+
Sbjct: 66 GFTKSNELFVGRLAMIGFASAIIGELLTGKGALAQFGLETGIPITDTEPLVIGLVIFNLV 125
Query: 155 GAIGALGDRGKFV--DEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGR 212
A+ L +G FV DE +E G P L+ L G FGFTK+NELFVGR
Sbjct: 126 AAL--LPAKGVFVPSDEEEEERPKGSLQDPSISILQPLKFLGISG--FGFTKANELFVGR 181
Query: 213 LAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKF 270
+AQLG AF+LIGE +TGKG LAQ +IETG+P+++ EPL+L + F AA+N GTG F
Sbjct: 182 VAQLGFAFALIGEAVTGKGPLAQFDIETGLPLSDTEPLLLAFIAFTLFAAINEGTGTF 239
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/78 (66%), Positives = 62/78 (79%), Gaps = 1/78 (1%)
Query: 201 GFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFV 260
GFTKSNELFVGRLA +G A ++IGE++TGKGALAQ +ETGIPI + EPLV+ VIF V
Sbjct: 66 GFTKSNELFVGRLAMIGFASAIIGELLTGKGALAQFGLETGIPITDTEPLVIGLVIFNLV 125
Query: 261 AALNPGTGKFV-TDEDEE 277
AAL P G FV +DE+EE
Sbjct: 126 AALLPAKGVFVPSDEEEE 143
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 53/65 (81%)
Query: 93 GFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFT 152
GFGFTK NELFVGRVA +GFA +L+GE +TGKG LAQ ++ETG+P+ + EPLLL FI FT
Sbjct: 168 GFGFTKANELFVGRVAQLGFAFALIGEAVTGKGPLAQFDIETGLPLSDTEPLLLAFIAFT 227
Query: 153 LLGAI 157
L AI
Sbjct: 228 LFAAI 232
>gi|384246138|gb|EIE19629.1| hypothetical protein COCSUDRAFT_19247, partial [Coccomyxa
subellipsoidea C-169]
Length = 182
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/188 (52%), Positives = 124/188 (65%), Gaps = 14/188 (7%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTL 153
GFTK NELFV R AMIG A S++GE +TGKG L QL ETG+PI E + ++LF I F L
Sbjct: 3 LGFTKSNELFVSRAAMIGVATSIIGELLTGKGALQQLGFETGLPIQELDGIVLFIIAFNL 62
Query: 154 LGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIF-----GFTKSNEL 208
+ A+ L +G FV + +E T P G S + L G F GFTK+NEL
Sbjct: 63 IAAL--LPAKGTFVPDEEELTPR-----PKGALQDSKVSLVTPGKFFGIKGLGFTKANEL 115
Query: 209 FVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEP-LVLFNVIFFFVAALNPGT 267
F GRLAQLG A SLIGE +TGKG L QLN+ETGIP+ +++ L++F VI F+AA+N G+
Sbjct: 116 FAGRLAQLGFAASLIGEGLTGKGILGQLNVETGIPLKDVDAVLLVFGVILPFLAAINEGS 175
Query: 268 GKFVTDED 275
GKFV DED
Sbjct: 176 GKFV-DED 182
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 58/77 (75%)
Query: 200 FGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFF 259
GFTKSNELFV R A +G+A S+IGE++TGKGAL QL ETG+PI E++ +VLF + F
Sbjct: 3 LGFTKSNELFVSRAAMIGVATSIIGELLTGKGALQQLGFETGLPIQELDGIVLFIIAFNL 62
Query: 260 VAALNPGTGKFVTDEDE 276
+AAL P G FV DE+E
Sbjct: 63 IAALLPAKGTFVPDEEE 79
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/78 (60%), Positives = 58/78 (74%), Gaps = 3/78 (3%)
Query: 93 GFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFF-ILF 151
G GFTK NELF GR+A +GFAASL+GEG+TGKGIL QLN+ETGIP+ + + +LL F ++
Sbjct: 106 GLGFTKANELFAGRLAQLGFAASLIGEGLTGKGILGQLNVETGIPLKDVDAVLLVFGVIL 165
Query: 152 TLLGAIGALGDRGKFVDE 169
L AI GKFVDE
Sbjct: 166 PFLAAINE--GSGKFVDE 181
>gi|159462492|ref|XP_001689476.1| chloroplast photosystem II-associated 22 kDa protein [Chlamydomonas
reinhardtii]
gi|158283464|gb|EDP09214.1| chloroplast photosystem II-associated 22 kDa protein [Chlamydomonas
reinhardtii]
Length = 245
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 106/247 (42%), Positives = 138/247 (55%), Gaps = 28/247 (11%)
Query: 49 SLTAAAASSSSKAFSTVALFKSKTKAPPK-TKKPKVEDGIFGTSGGF------------- 94
S A A S +TV ++ + TK PK K +VE F + G
Sbjct: 6 STKAFAQRGVSARKNTVRVYAASTKVNPKLASKTEVER--FKQATGLPAPAINGKQFPLK 63
Query: 95 -GFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTL 153
GFTK NELFVGR+AM+GF+ASL+GE +TGKG LAQ ETG+ E + L++ I F L
Sbjct: 64 LGFTKTNELFVGRLAMVGFSASLIGEILTGKGALAQFGYETGLNGIEVDGLVIGLIAFNL 123
Query: 154 LGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKE-----GGPIFGFTKSNEL 208
+ A+ L FV E + + P G + L E G FGFTK NEL
Sbjct: 124 IAAV--LPTSQTFVPEEQDTI----SERPAGPLQDPRITLLEPKKFFGVQGFGFTKENEL 177
Query: 209 FVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTG 268
FVGR AQLG AFSLIGE +TGKGALAQ +IETG+ + + E ++ ++F AA+N G+G
Sbjct: 178 FVGRAAQLGFAFSLIGEAVTGKGALAQFDIETGLSLRDTEFGLVVFILFLLFAAINEGSG 237
Query: 269 KFVTDED 275
KFV +E
Sbjct: 238 KFVDEES 244
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 55/76 (72%)
Query: 201 GFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFV 260
GFTK+NELFVGRLA +G + SLIGEI+TGKGALAQ ETG+ E++ LV+ + F +
Sbjct: 65 GFTKTNELFVGRLAMVGFSASLIGEILTGKGALAQFGYETGLNGIEVDGLVIGLIAFNLI 124
Query: 261 AALNPGTGKFVTDEDE 276
AA+ P + FV +E +
Sbjct: 125 AAVLPTSQTFVPEEQD 140
>gi|159463386|ref|XP_001689923.1| chloroplast photosystem II-associated 22 kDa protein [Chlamydomonas
reinhardtii]
gi|158283911|gb|EDP09661.1| chloroplast photosystem II-associated 22 kDa protein [Chlamydomonas
reinhardtii]
Length = 245
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 107/251 (42%), Positives = 141/251 (56%), Gaps = 37/251 (14%)
Query: 54 AASSSSKAFS---------TVALFKSKTKAPPK-TKKPKVEDGIFGTSGGF--------- 94
A + S+KAF+ TV ++ + TK PK K +VE F + G
Sbjct: 2 AMTLSTKAFAQRGVSARKNTVRVYAATTKVNPKLASKTEVER--FKQATGLPAPAINGKQ 59
Query: 95 -----GFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFI 149
GFTK NELFVGR+AM+GF+ASL+GE +TGKG LAQ ETG+ E + L++ I
Sbjct: 60 FPLKLGFTKTNELFVGRLAMVGFSASLIGEILTGKGALAQFGYETGLNGIEVDGLVIGLI 119
Query: 150 LFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKE-----GGPIFGFTK 204
F L+ A+ L FV E + + P G + L E G FGFTK
Sbjct: 120 AFNLIAAV--LPTSQTFVPEEQDTI----SERPAGPLQDPRITLLEPKKFFGVQGFGFTK 173
Query: 205 SNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALN 264
NELFVGR AQLG AFSLIGE +TGKGALAQ +IETG+ + + E ++ ++F AA+N
Sbjct: 174 ENELFVGRAAQLGFAFSLIGEAVTGKGALAQFDIETGLSLRDTEFGLVVFILFLLFAAIN 233
Query: 265 PGTGKFVTDED 275
G+GKFV +E
Sbjct: 234 EGSGKFVDEES 244
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 55/76 (72%)
Query: 201 GFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFV 260
GFTK+NELFVGRLA +G + SLIGEI+TGKGALAQ ETG+ E++ LV+ + F +
Sbjct: 65 GFTKTNELFVGRLAMVGFSASLIGEILTGKGALAQFGYETGLNGIEVDGLVIGLIAFNLI 124
Query: 261 AALNPGTGKFVTDEDE 276
AA+ P + FV +E +
Sbjct: 125 AAVLPTSQTFVPEEQD 140
>gi|302848396|ref|XP_002955730.1| hypothetical protein VOLCADRAFT_83375 [Volvox carteri f.
nagariensis]
gi|300258923|gb|EFJ43155.1| hypothetical protein VOLCADRAFT_83375 [Volvox carteri f.
nagariensis]
Length = 241
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 92/183 (50%), Positives = 120/183 (65%), Gaps = 7/183 (3%)
Query: 95 GFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLL 154
GFTK NELFVGR+AM+GFA+SL+GE +TGKG LAQ ETG+ E + L++ + F L+
Sbjct: 63 GFTKTNELFVGRLAMLGFASSLIGEILTGKGPLAQFGYETGLNGIEVDGLIIGLVAFNLI 122
Query: 155 GAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLR-SALGLKE--GGPIFGFTKSNELFVG 211
A+ L FV P+E + P + R S L K G FGFTK NELFVG
Sbjct: 123 AAV--LPTSQTFV--PEEQQSIQDRPAGPLQDPRISLLDPKRFFGVKGFGFTKENELFVG 178
Query: 212 RLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFV 271
R+AQLG AFS+IGE+ TGKGALAQ +IETG+ + + E ++ ++F AA+N GTGKFV
Sbjct: 179 RMAQLGFAFSIIGEVTTGKGALAQFDIETGLSLRDTEFGLVVFILFLLFAAVNEGTGKFV 238
Query: 272 TDE 274
+E
Sbjct: 239 DEE 241
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 56/77 (72%), Gaps = 2/77 (2%)
Query: 93 GFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFT 152
GFGFTK+NELFVGR+A +GFA S++GE TGKG LAQ ++ETG+ + + E L+ FILF
Sbjct: 166 GFGFTKENELFVGRMAQLGFAFSIIGEVTTGKGALAQFDIETGLSLRDTEFGLVVFILFL 225
Query: 153 LLGAIGALGDRGKFVDE 169
L A+ GKFVDE
Sbjct: 226 LFAAVNE--GTGKFVDE 240
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 54/76 (71%)
Query: 201 GFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFV 260
GFTK+NELFVGRLA LG A SLIGEI+TGKG LAQ ETG+ E++ L++ V F +
Sbjct: 63 GFTKTNELFVGRLAMLGFASSLIGEILTGKGPLAQFGYETGLNGIEVDGLIIGLVAFNLI 122
Query: 261 AALNPGTGKFVTDEDE 276
AA+ P + FV +E +
Sbjct: 123 AAVLPTSQTFVPEEQQ 138
>gi|355340447|gb|AER58182.1| chloroplast photosystem II subunit S [Ulva linza]
Length = 243
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/190 (45%), Positives = 116/190 (61%), Gaps = 20/190 (10%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTL 153
GFTK NELFVGR+AM+G A + +GE ITGKG L QL++ETG I + + +LF I+F L
Sbjct: 64 LGFTKNNELFVGRMAMLGVAFAAIGEVITGKGPLGQLSIETGSSITDIDGAVLFLIVFNL 123
Query: 154 LGAIGALGDRGKFVDEPDE----PTGL----GGAVIPPGKGLRSALGLKEGGPIFGFTKS 205
+ A+ L +GK V DE P G +V+ P K G FGFTK
Sbjct: 124 IAAL--LPAKGKLVLPEDEFEARPKGSLQDPSVSVLQPKKFF--------GISGFGFTKE 173
Query: 206 NELFVGRLAQLGIAFSLIGEIIT--GKGALAQLNIETGIPINEIEPLVLFNVIFFFVAAL 263
NELFVGR+AQLG A L+GE + G L Q+ TG+P++E EPL++F+++F AA+
Sbjct: 174 NELFVGRMAQLGFAAMLLGETLLPGDLGPLGQIGFTTGVPLSETEPLLIFSILFTLFAAI 233
Query: 264 NPGTGKFVTD 273
N G+G FV +
Sbjct: 234 NEGSGDFVDE 243
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 200 FGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFF 259
GFTK+NELFVGR+A LG+AF+ IGE+ITGKG L QL+IETG I +I+ VLF ++F
Sbjct: 64 LGFTKNNELFVGRMAMLGVAFAAIGEVITGKGPLGQLSIETGSSITDIDGAVLFLIVFNL 123
Query: 260 VAALNPGTGKFVTDEDE 276
+AAL P GK V EDE
Sbjct: 124 IAALLPAKGKLVLPEDE 140
>gi|411342231|gb|AFW18037.1| chloroplast photosystem II subunit S [Ulva prolifera]
Length = 244
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/190 (45%), Positives = 115/190 (60%), Gaps = 20/190 (10%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTL 153
GFTK NELFVGR+AM+G A + +GE ITGKG L QL++ETG I + + +LF I F L
Sbjct: 65 LGFTKNNELFVGRMAMLGVAFAAIGEVITGKGPLGQLSIETGSSITDIDGAVLFLIAFNL 124
Query: 154 LGAIGALGDRGKFVDEPDE----PTGL----GGAVIPPGKGLRSALGLKEGGPIFGFTKS 205
+ A+ L +GK V DE P G +V+ P K G FGFTK
Sbjct: 125 IAAL--LPAKGKLVLPEDEFEARPKGSLQDPSVSVLQPKKFF--------GISGFGFTKE 174
Query: 206 NELFVGRLAQLGIAFSLIGEIIT--GKGALAQLNIETGIPINEIEPLVLFNVIFFFVAAL 263
NELFVGR+AQLG A L+GE + G L Q+ TG+P++E EPL++F+++F AA+
Sbjct: 175 NELFVGRMAQLGFAAMLLGETLLPGDLGPLGQIGFTTGVPLSETEPLLIFSILFTLFAAI 234
Query: 264 NPGTGKFVTD 273
N G+G FV +
Sbjct: 235 NEGSGDFVDE 244
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 57/77 (74%)
Query: 200 FGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFF 259
GFTK+NELFVGR+A LG+AF+ IGE+ITGKG L QL+IETG I +I+ VLF + F
Sbjct: 65 LGFTKNNELFVGRMAMLGVAFAAIGEVITGKGPLGQLSIETGSSITDIDGAVLFLIAFNL 124
Query: 260 VAALNPGTGKFVTDEDE 276
+AAL P GK V EDE
Sbjct: 125 IAALLPAKGKLVLPEDE 141
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/84 (58%), Positives = 57/84 (67%), Gaps = 5/84 (5%)
Query: 88 FGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGIT--GKGILAQLNLETGIPIYEAEPLL 145
FG SG FGFTK+NELFVGR+A +GFAA LLGE + G L Q+ TG+P+ E EPLL
Sbjct: 164 FGISG-FGFTKENELFVGRMAQLGFAAMLLGETLLPGDLGPLGQIGFTTGVPLSETEPLL 222
Query: 146 LFFILFTLLGAIGALGDRGKFVDE 169
+F ILFTL AI G FVDE
Sbjct: 223 IFSILFTLFAAINE--GSGDFVDE 244
>gi|307110251|gb|EFN58487.1| hypothetical protein CHLNCDRAFT_140514 [Chlorella variabilis]
Length = 248
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 84/184 (45%), Positives = 112/184 (60%), Gaps = 17/184 (9%)
Query: 95 GFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLL 154
GFTK N AM+G A++L+GE +TG G LAQL E I++ E +L I F LL
Sbjct: 78 GFTKSN-------AMLGVASALIGEVLTGSGPLAQLGYEFKESIFDVEFEILAVIAFNLL 130
Query: 155 GAIGALGDRGKFV-DEPDEPTGLGGAVIPPGKGL---RSALGLKEGGPIFGFTKSNELFV 210
A L +GKFV DE + G + P L + LG+ FGF+K NELFV
Sbjct: 131 AAF--LPAKGKFVPDEAELEERPKGPLQDPRISLLEPKRFLGVSS----FGFSKENELFV 184
Query: 211 GRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKF 270
GR+AQLG A +LIGE ITG+G L Q+ IETG+P+++ EPL+L + F AA+N G+GKF
Sbjct: 185 GRVAQLGFAAALIGEAITGQGILGQIGIETGLPLSQTEPLLLGFIAFTLFAAVNEGSGKF 244
Query: 271 VTDE 274
V ++
Sbjct: 245 VDEK 248
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 60/76 (78%), Gaps = 2/76 (2%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTL 153
FGF+K+NELFVGRVA +GFAA+L+GE ITG+GIL Q+ +ETG+P+ + EPLLL FI FTL
Sbjct: 174 FGFSKENELFVGRVAQLGFAAALIGEAITGQGILGQIGIETGLPLSQTEPLLLGFIAFTL 233
Query: 154 LGAIGALGDRGKFVDE 169
A+ GKFVDE
Sbjct: 234 FAAVNE--GSGKFVDE 247
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 58/111 (52%), Gaps = 14/111 (12%)
Query: 171 DEPTGLGGAVIPPGKGLRSA-----LGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGE 225
D P G V+ GK +++ LG + GFTKSN A LG+A +LIGE
Sbjct: 45 DAPAG--AKVLVAGKDIKATQFQADLGFAKPTIALGFTKSN-------AMLGVASALIGE 95
Query: 226 IITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDE 276
++TG G LAQL E I ++E +L + F +AA P GKFV DE E
Sbjct: 96 VLTGSGPLAQLGYEFKESIFDVEFEILAVIAFNLLAAFLPAKGKFVPDEAE 146
>gi|414879499|tpg|DAA56630.1| TPA: hypothetical protein ZEAMMB73_446691 [Zea mays]
Length = 65
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 51/65 (78%), Positives = 62/65 (95%)
Query: 213 LAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVT 272
+AQLG+AFS+IGEIITGKGALAQLNIETG+PINEIEPLV+FNV+FFF+AA+NPG G+F+
Sbjct: 1 MAQLGVAFSIIGEIITGKGALAQLNIETGVPINEIEPLVIFNVLFFFIAAINPGNGRFII 60
Query: 273 DEDEE 277
E+EE
Sbjct: 61 GEEEE 65
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 107 VAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKF 166
+A +G A S++GE ITGKG LAQLN+ETG+PI E EPL++F +LF + AI G+F
Sbjct: 1 MAQLGVAFSIIGEIITGKGALAQLNIETGVPINEIEPLVIFNVLFFFIAAINP--GNGRF 58
Query: 167 VDEPDE 172
+ +E
Sbjct: 59 IIGEEE 64
>gi|62319374|dbj|BAD94678.1| Photosystem II chlorophyll-binding protein PsbS [Arabidopsis
thaliana]
Length = 66
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 59/65 (90%)
Query: 213 LAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVT 272
LAQLGIAFSLIGEIITGKGALAQLNIETGIPI +IEPLVL NV FFF AA+NPG GKF+T
Sbjct: 1 LAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEPLVLLNVAFFFFAAINPGNGKFIT 60
Query: 273 DEDEE 277
D+ EE
Sbjct: 61 DDGEE 65
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 107 VAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKF 166
+A +G A SL+GE ITGKG LAQLN+ETGIPI + EPL+L + F AI GKF
Sbjct: 1 LAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEPLVLLNVAFFFFAAINP--GNGKF 58
Query: 167 VDEPDEPT 174
+ + E +
Sbjct: 59 ITDDGEES 66
>gi|380293423|gb|AFD50359.1| photosystem II 22 KDa protein, partial [Mentha spicata]
gi|380293425|gb|AFD50360.1| photosystem II 22 KDa protein, partial [Mentha spicata]
Length = 85
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/88 (80%), Positives = 76/88 (86%), Gaps = 4/88 (4%)
Query: 114 ASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEP 173
ASLLGE +TGKGIL+QLNLETGIPIYEAEPLLLFFILF LLGAIGALGDRG+FVD D P
Sbjct: 1 ASLLGEAVTGKGILSQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFVD--DAP 58
Query: 174 -TGLGGAVIPPGKGLRSALGLKEGGPIF 200
TGL AVI PGKG RSALGL + GP+F
Sbjct: 59 ATGLDKAVIAPGKGFRSALGLGD-GPLF 85
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 40/55 (72%), Gaps = 2/55 (3%)
Query: 221 SLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNP--GTGKFVTD 273
SL+GE +TGKG L+QLN+ETGIPI E EPL+LF ++F + A+ G+FV D
Sbjct: 2 SLLGEAVTGKGILSQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFVDD 56
>gi|384247000|gb|EIE20488.1| hypothetical protein COCSUDRAFT_43923 [Coccomyxa subellipsoidea
C-169]
Length = 221
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 88/159 (55%), Gaps = 13/159 (8%)
Query: 96 FTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLG 155
FT++ E++VGR AM GF ++++GE +TG+G L QL LET +P + + F +
Sbjct: 37 FTRRREIWVGRTAMTGFLSAVIGELLTGRGALGQLQLETRLPQNVINWAVFGIVAFNFVT 96
Query: 156 AIGALG---DRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGR 212
A+ G D D P G + P K G +G FGFTK NELFVGR
Sbjct: 97 ALNPFGPTFDEDNQADVRKRPAGPTQKAMDPSKPAEY-FGTSKG---FGFTKKNELFVGR 152
Query: 213 LAQLGIAFSLIGEIIT-GKGALAQLNIETGIPIN-EIEP 249
+A LG A LIGE++T GKG L Q+ GIP+N E+ P
Sbjct: 153 VAMLGFASELIGEVLTKGKGPLGQI----GIPLNTEVNP 187
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 57/96 (59%), Gaps = 12/96 (12%)
Query: 77 KTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGIT-GKGILAQLNLETG 135
K P FGTS GFGFTK+NELFVGRVAM+GFA+ L+GE +T GKG L Q+ G
Sbjct: 123 KAMDPSKPAEYFGTSKGFGFTKKNELFVGRVAMLGFASELIGEVLTKGKGPLGQI----G 178
Query: 136 IPIY-EAEPLLLFFIL-----FTLLGAIGALGDRGK 165
IP+ E P F L F L AIG G+ G+
Sbjct: 179 IPLNTEVNPQYATFALAVWVGFFLFAAIG-FGNWGQ 213
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 194 KEGGPI-FGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVL 252
KE P+ FT+ E++VGR A G ++IGE++TG+GAL QL +ET +P N I V
Sbjct: 28 KETNPLQSAFTRRREIWVGRTAMTGFLSAVIGELLTGRGALGQLQLETRLPQNVINWAVF 87
Query: 253 FNVIFFFVAALNPGTGKFVTDEDEE 277
V F FV ALNP F DED +
Sbjct: 88 GIVAFNFVTALNPFGPTF--DEDNQ 110
>gi|361068553|gb|AEW08588.1| Pinus taeda anonymous locus CL634Contig1_03 genomic sequence
gi|383134979|gb|AFG48478.1| Pinus taeda anonymous locus CL634Contig1_03 genomic sequence
gi|383134980|gb|AFG48479.1| Pinus taeda anonymous locus CL634Contig1_03 genomic sequence
gi|383134981|gb|AFG48480.1| Pinus taeda anonymous locus CL634Contig1_03 genomic sequence
gi|383134982|gb|AFG48481.1| Pinus taeda anonymous locus CL634Contig1_03 genomic sequence
gi|383134983|gb|AFG48482.1| Pinus taeda anonymous locus CL634Contig1_03 genomic sequence
gi|383134984|gb|AFG48483.1| Pinus taeda anonymous locus CL634Contig1_03 genomic sequence
gi|383134985|gb|AFG48484.1| Pinus taeda anonymous locus CL634Contig1_03 genomic sequence
gi|383134986|gb|AFG48485.1| Pinus taeda anonymous locus CL634Contig1_03 genomic sequence
gi|383134987|gb|AFG48486.1| Pinus taeda anonymous locus CL634Contig1_03 genomic sequence
gi|383134988|gb|AFG48487.1| Pinus taeda anonymous locus CL634Contig1_03 genomic sequence
gi|383134989|gb|AFG48488.1| Pinus taeda anonymous locus CL634Contig1_03 genomic sequence
gi|383134990|gb|AFG48489.1| Pinus taeda anonymous locus CL634Contig1_03 genomic sequence
gi|383134991|gb|AFG48490.1| Pinus taeda anonymous locus CL634Contig1_03 genomic sequence
gi|383134992|gb|AFG48491.1| Pinus taeda anonymous locus CL634Contig1_03 genomic sequence
gi|383134993|gb|AFG48492.1| Pinus taeda anonymous locus CL634Contig1_03 genomic sequence
gi|383134994|gb|AFG48493.1| Pinus taeda anonymous locus CL634Contig1_03 genomic sequence
Length = 53
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/52 (82%), Positives = 48/52 (92%)
Query: 226 IITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 277
IITGKGALAQLNIETG+PI +IEPLVLFNV+FF +AA+NPG GKFVTD DEE
Sbjct: 1 IITGKGALAQLNIETGVPITDIEPLVLFNVLFFLIAAVNPGNGKFVTDVDEE 52
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 38/52 (73%), Gaps = 2/52 (3%)
Query: 121 ITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDE 172
ITGKG LAQLN+ETG+PI + EPL+LF +LF L+ A+ GKFV + DE
Sbjct: 2 ITGKGALAQLNIETGVPITDIEPLVLFNVLFFLIAAVNP--GNGKFVTDVDE 51
>gi|302843810|ref|XP_002953446.1| hypothetical protein VOLCADRAFT_94261 [Volvox carteri f.
nagariensis]
gi|300261205|gb|EFJ45419.1| hypothetical protein VOLCADRAFT_94261 [Volvox carteri f.
nagariensis]
Length = 316
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 89/172 (51%), Gaps = 10/172 (5%)
Query: 95 GFTKQNELFVGRVAMIGFAASLLGEGITGK--GILAQLNLETGIPIYEAEPLLLFFILFT 152
FT++ E+FVGR+AM+GF A+ + E +T G + Q+ + TG+ +L+ +++
Sbjct: 126 AFTRRREIFVGRIAMVGFFATCVLEILTANHLGPIRQVQMWTGMDTATITAMLMGIVIYN 185
Query: 153 LLGAIGALG---DRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELF 209
LG +G D PTG ++ P LG G +GFTK NELF
Sbjct: 186 ALGGLGPWSPTFSPENLRDVARRPTGPPSVLVNPLN-----LGKLLGISGWGFTKRNELF 240
Query: 210 VGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVA 261
GRLA LG A +++GE+ TG+GAL+QL GI ++ + N F A
Sbjct: 241 HGRLAMLGFAAAVVGELKTGRGALSQLAGYLGIIPDDTYYSAVMNGFIVFAA 292
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 36/44 (81%)
Query: 93 GFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGI 136
G+GFTK+NELF GR+AM+GFAA+++GE TG+G L+QL GI
Sbjct: 230 GWGFTKRNELFHGRLAMLGFAAAVVGELKTGRGALSQLAGYLGI 273
>gi|384252969|gb|EIE26444.1| hypothetical protein COCSUDRAFT_32166 [Coccomyxa subellipsoidea
C-169]
Length = 167
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 86/161 (53%), Gaps = 25/161 (15%)
Query: 103 FVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGD 162
FVGR+ ++ A LLGE ITGKG + L+ G+P++E EP+L ++ L+ A+
Sbjct: 24 FVGRLIVLVLGAVLLGERITGKGAVQALDHAVGVPLWEIEPVLGAMVVGLLIAAL--YPR 81
Query: 163 RGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSL 222
R + V++ KE G + +++V RLA + +A ++
Sbjct: 82 RKQLVEDAQRRQ-------------------KEMGD---WLADAQVWVRRLACVSLASTI 119
Query: 223 IGEIITGKGALAQLNIETGIP-INEIEPLVLFNVIFFFVAA 262
+ E++TGKGALA L+IETG+ ++EIE F ++ F AA
Sbjct: 120 VVEVVTGKGALALLDIETGVETLSEIEAGAAFLIMLFLTAA 160
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%)
Query: 209 FVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTG 268
FVGRL L + L+GE ITGKGA+ L+ G+P+ EIEP++ V+ +AAL P
Sbjct: 24 FVGRLIVLVLGAVLLGERITGKGAVQALDHAVGVPLWEIEPVLGAMVVGLLIAALYPRRK 83
Query: 269 KFVTD 273
+ V D
Sbjct: 84 QLVED 88
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 79 KKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIP- 137
+K VED + +++V R+A + A++++ E +TGKG LA L++ETG+
Sbjct: 82 RKQLVEDAQRRQKEMGDWLADAQVWVRRLACVSLASTIVVEVVTGKGALALLDIETGVET 141
Query: 138 IYEAEPLLLFFILFTLLGA 156
+ E E F I+ L A
Sbjct: 142 LSEIEAGAAFLIMLFLTAA 160
>gi|384245655|gb|EIE19148.1| hypothetical protein COCSUDRAFT_59631 [Coccomyxa subellipsoidea
C-169]
Length = 248
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 69/118 (58%), Gaps = 10/118 (8%)
Query: 59 SKAFSTVALFKSKTKAPPKTKKPKVED-----GIFGTSGGFGFTKQNELFVGRVAMIGFA 113
S FS K + T+KP++ +FG + FGF+K+NEL VGR A +GF
Sbjct: 130 SPTFSAANQRDVKKRGAGPTQKPQINAVSNPGDMFGATE-FGFSKKNELLVGRTAQLGFL 188
Query: 114 ASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAI--GALGDRGKFVDE 169
A+++GE +TG G L Q LETGIP+ +A LL+ FI F L+ AI G GD K +DE
Sbjct: 189 AAVIGEKVTGFGPLKQFGLETGIPLGQASVLLVAFISFFLVAAIFNGEYGD--KAIDE 244
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 87/182 (47%), Gaps = 16/182 (8%)
Query: 96 FTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLG 155
FT++ ELFV TG G L QL LE G+P Y + L+L + ++ +G
Sbjct: 80 FTRRRELFVIS---------------TGLGPLGQLQLELGLPSYAVDLLVLGTVAYSFIG 124
Query: 156 AIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQ 215
+ ++ D G P S G G FGF+K NEL VGR AQ
Sbjct: 125 GLNPKSPTFSAANQRDVKKRGAGPTQKPQINAVSNPGDMFGATEFGFSKKNELLVGRTAQ 184
Query: 216 LGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAAL-NPGTGKFVTDE 274
LG ++IGE +TG G L Q +ETGIP+ + L++ + FF VAA+ N G DE
Sbjct: 185 LGFLAAVIGEKVTGFGPLKQFGLETGIPLGQASVLLVAFISFFLVAAIFNGEYGDKAIDE 244
Query: 275 DE 276
D
Sbjct: 245 DR 246
>gi|93004419|gb|ABE97124.1| chloroplast PSII associated light-harvesting complex II protein
[Solanum lycopersicum]
Length = 52
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/52 (94%), Positives = 49/52 (94%)
Query: 114 ASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGK 165
ASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGALGDRG
Sbjct: 1 ASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGN 52
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 25/29 (86%)
Query: 221 SLIGEIITGKGALAQLNIETGIPINEIEP 249
SL+GE ITGKG LAQLN+ETGIPI E EP
Sbjct: 2 SLLGEAITGKGILAQLNLETGIPIYEAEP 30
>gi|93004421|gb|ABE97126.1| chloroplast PSII associated light-harvesting complex II protein
[Solanum cheesmaniae]
Length = 51
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/51 (96%), Positives = 49/51 (96%)
Query: 114 ASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG 164
ASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGALGDRG
Sbjct: 1 ASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRG 51
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 25/29 (86%)
Query: 221 SLIGEIITGKGALAQLNIETGIPINEIEP 249
SL+GE ITGKG LAQLN+ETGIPI E EP
Sbjct: 2 SLLGEAITGKGILAQLNLETGIPIYEAEP 30
>gi|159475200|ref|XP_001695711.1| hypothetical protein CHLREDRAFT_175221 [Chlamydomonas reinhardtii]
gi|158275722|gb|EDP01498.1| predicted protein [Chlamydomonas reinhardtii]
Length = 316
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 12/153 (7%)
Query: 95 GFTKQNELFVGRVAMIGFAASLLGEGITGK--GILAQLNLETGIPIYEAEPLLLFFILFT 152
FT++ E+F+GR+AM+ FA S E T G + Q+ L +G+ L++ I +
Sbjct: 128 AFTRRREVFMGRIAMVAFAVSCGLEIFTADHLGPIRQVQLWSGLDESTVVALIMGIIAYN 187
Query: 153 LLGAIGALGDR---GKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELF 209
+LG +G D P G P L + +G G +GFTK NE+F
Sbjct: 188 VLGGLGPWSPTFAPENLRDVARRPRG-------PPSDLPAKVGDWLGISGWGFTKRNEVF 240
Query: 210 VGRLAQLGIAFSLIGEIITGKGALAQLNIETGI 242
GRLA +G F+ I E+ TG+GAL Q+ GI
Sbjct: 241 HGRLAMMGFLFAFINEMKTGRGALGQVAGYLGI 273
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 53/92 (57%), Gaps = 10/92 (10%)
Query: 71 KTKAPPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQL 130
+ + PP KV D + G SG +GFTK+NE+F GR+AM+GF + + E TG+G L Q+
Sbjct: 210 RPRGPPSDLPAKVGDWL-GISG-WGFTKRNEVFHGRLAMMGFLFAFINEMKTGRGALGQV 267
Query: 131 NLETGI----PIYEAEPLLLFFILFT--LLGA 156
GI Y A L FI+F+ +LGA
Sbjct: 268 AGYLGIIPDAAWYSA--CLNGFIVFSALMLGA 297
>gi|116783220|gb|ABK22842.1| unknown [Picea sitchensis]
gi|116790672|gb|ABK25698.1| unknown [Picea sitchensis]
Length = 153
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 54/86 (62%), Gaps = 13/86 (15%)
Query: 32 LRPKPFSHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKA--PPKT----------K 79
+RP + ++PL E +A AA +++ +TVALF+ K KA PPK +
Sbjct: 40 IRPPNAAETSWSPL-RELPSANAAGLNARTANTVALFRPKEKAAAPPKKGRTGRVSVPEE 98
Query: 80 KPKVEDGIFGTSGGFGFTKQNELFVG 105
KPKVEDGIFGTSGG GFTK NELFVG
Sbjct: 99 KPKVEDGIFGTSGGIGFTKANELFVG 124
>gi|93004420|gb|ABE97125.1| chloroplast PSII associated light-harvesting complex II protein
[Solanum chilense]
Length = 49
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/49 (95%), Positives = 47/49 (95%)
Query: 114 ASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGD 162
ASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGALGD
Sbjct: 1 ASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGD 49
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 25/29 (86%)
Query: 221 SLIGEIITGKGALAQLNIETGIPINEIEP 249
SL+GE ITGKG LAQLN+ETGIPI E EP
Sbjct: 2 SLLGEAITGKGILAQLNLETGIPIYEAEP 30
>gi|93004423|gb|ABE97128.1| chloroplast PSII associated light-harvesting complex II protein
[Solanum lycopersicoides]
Length = 48
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/48 (95%), Positives = 46/48 (95%)
Query: 114 ASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALG 161
ASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGALG
Sbjct: 1 ASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALG 48
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 25/29 (86%)
Query: 221 SLIGEIITGKGALAQLNIETGIPINEIEP 249
SL+GE ITGKG LAQLN+ETGIPI E EP
Sbjct: 2 SLLGEAITGKGILAQLNLETGIPIYEAEP 30
>gi|218196196|gb|EEC78623.1| hypothetical protein OsI_18672 [Oryza sativa Indica Group]
Length = 133
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 64/122 (52%), Gaps = 43/122 (35%)
Query: 135 GIPIYEAEPLLLFFILFTLLGAIGALGDRGKF-VDEPDEPTGLGGAVIPPGKGLRSALGL 193
IPIYE EPLLL F LFTLLGAIG+ R F VD+P TGL AV
Sbjct: 8 AIPIYEVEPLLLLFNLFTLLGAIGS---RDSFVVDQP--ATGLDKAV------------- 49
Query: 194 KEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLF 253
IAFS+I EI+TGK AL QLNIET IP+ EIE LVLF
Sbjct: 50 ------------------------IAFSIISEIVTGKVALTQLNIETSIPVTEIESLVLF 85
Query: 254 NV 255
N+
Sbjct: 86 NL 87
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 108 AMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLF 147
A+I F S++ E +TGK L QLN+ET IP+ E E L+LF
Sbjct: 48 AVIAF--SIISEIVTGKVALTQLNIETSIPVTEIESLVLF 85
>gi|93004415|gb|ABE97120.1| chloroplast PSII associated light-harvesting complex II protein
[Solanum chmielewskii]
gi|93004416|gb|ABE97121.1| chloroplast PSII associated light-harvesting complex II protein
[Solanum pimpinellifolium]
gi|93004418|gb|ABE97123.1| chloroplast PSII associated light-harvesting complex II protein
[Solanum habrochaites]
gi|93004422|gb|ABE97127.1| chloroplast PSII associated light-harvesting complex II protein
[Solanum pennellii]
Length = 47
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/47 (95%), Positives = 45/47 (95%)
Query: 114 ASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGAL 160
ASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGAL
Sbjct: 1 ASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGAL 47
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 25/29 (86%)
Query: 221 SLIGEIITGKGALAQLNIETGIPINEIEP 249
SL+GE ITGKG LAQLN+ETGIPI E EP
Sbjct: 2 SLLGEAITGKGILAQLNLETGIPIYEAEP 30
>gi|93004417|gb|ABE97122.1| chloroplast PSII associated light-harvesting complex II protein
[Solanum arcanum]
Length = 46
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/46 (95%), Positives = 44/46 (95%)
Query: 114 ASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGA 159
ASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGA
Sbjct: 1 ASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGA 46
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 25/29 (86%)
Query: 221 SLIGEIITGKGALAQLNIETGIPINEIEP 249
SL+GE ITGKG LAQLN+ETGIPI E EP
Sbjct: 2 SLLGEAITGKGILAQLNLETGIPIYEAEP 30
>gi|222630399|gb|EEE62531.1| hypothetical protein OsJ_17329 [Oryza sativa Japonica Group]
Length = 92
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/122 (46%), Positives = 63/122 (51%), Gaps = 43/122 (35%)
Query: 135 GIPIYEAEPLLLFFILFTLLGAIGALGDRGKF-VDEPDEPTGLGGAVIPPGKGLRSALGL 193
IPIYE EPLLL F LFTLLG IG+ R F VD+P TGL AV
Sbjct: 8 AIPIYEVEPLLLLFNLFTLLGTIGS---RDNFVVDQP--ATGLDKAV------------- 49
Query: 194 KEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLF 253
IAFS+I EI+TGK AL QLNIET IP+ EIE LVLF
Sbjct: 50 ------------------------IAFSIISEIVTGKVALTQLNIETSIPVTEIESLVLF 85
Query: 254 NV 255
N+
Sbjct: 86 NL 87
Score = 40.4 bits (93), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 108 AMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLF 147
A+I F S++ E +TGK L QLN+ET IP+ E E L+LF
Sbjct: 48 AVIAF--SIISEIVTGKVALTQLNIETSIPVTEIESLVLF 85
>gi|255081274|ref|XP_002507859.1| photosystem II 22 kDa protein, chloroplast precursor [Micromonas
sp. RCC299]
gi|226523135|gb|ACO69117.1| photosystem II 22 kDa protein, chloroplast precursor [Micromonas
sp. RCC299]
Length = 286
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 38/53 (71%)
Query: 98 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFIL 150
K ELF GR+AM+GFA +L+GE +T +G L Q NLETG+P+ + E FF+L
Sbjct: 208 KPYELFNGRLAMLGFAFALVGEAVTKRGPLEQFNLETGVPVIDEELFGAFFLL 260
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 83/195 (42%), Gaps = 50/195 (25%)
Query: 101 ELFVGRVAMIGFAASLLGEGIT-GKGILAQLNLETGIPIYEAEPLLL------------- 146
E+ +GR AM+GF + +G+ +T G G + QL E + P ++
Sbjct: 84 EMKLGRAAMVGFFFTTVGDVVTRGAGPVEQLRDEQTFIMNHINPAMIAKDALEVAGIYVE 143
Query: 147 -FFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAV--IPPGKGLRSALGLKEGGPIFGF- 202
FI++ L A L + GL V K R A L+ G G
Sbjct: 144 SVFIVWLCLAAAFILAVQ----------QGLASPVRTYSSKKSARRA-ELEASGERLGVM 192
Query: 203 --------------TKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIE 248
K ELF GRLA LG AF+L+GE +T +G L Q N+ETG+P+ + E
Sbjct: 193 LASVKDALDVQVREQKPYELFNGRLAMLGFAFALVGEAVTKRGPLEQFNLETGVPVIDEE 252
Query: 249 PL-------VLFNVI 256
V+FNV+
Sbjct: 253 LFGAFFLLGVVFNVV 267
>gi|308805584|ref|XP_003080104.1| photosystem II 22 kda polypeptide (ISS) [Ostreococcus tauri]
gi|116058563|emb|CAL53752.1| photosystem II 22 kda polypeptide (ISS) [Ostreococcus tauri]
Length = 244
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 80/178 (44%), Gaps = 29/178 (16%)
Query: 101 ELFVGRVAMIGFAASLLGEGIT-GKGILAQLNLETGIPIYEAEPLLL---------FFIL 150
E+ +GR AM+GF + LG+ IT G+G + QL E I P+ L ++
Sbjct: 64 EINLGRAAMLGFLGTTLGDVITRGEGPIEQLEDEAAYVINHVNPVDLTRDALEVAGIYVE 123
Query: 151 FTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSN---E 207
+L + V + G P +R+ G P K E
Sbjct: 124 SVILVWLLLGCALLLGVSQ--------GMRNP----IRTVSGRTTKQPYETNVKEQKPYE 171
Query: 208 LFVGRLAQLGIAFSLIGEIITGK-GALAQLNIETGIPINEIEPLVLFNVIFFFVAALN 264
LF GRLA LG AF+L+G++ TG G L Q+ E GIP+ + E +F VIF ALN
Sbjct: 172 LFNGRLAMLGSAFALVGDVRTGGLGPLEQVQNEVGIPVIDEE---IFAVIFLGGVALN 226
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 98 KQNELFVGRVAMIGFAASLLGEGITGK-GILAQLNLETGIPIYEAEPLLLFFI 149
K ELF GR+AM+G A +L+G+ TG G L Q+ E GIP+ + E + F+
Sbjct: 168 KPYELFNGRLAMLGSAFALVGDVRTGGLGPLEQVQNEVGIPVIDEEIFAVIFL 220
>gi|303282139|ref|XP_003060361.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457832|gb|EEH55130.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 285
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 41/68 (60%), Gaps = 5/68 (7%)
Query: 88 FGTSGGF-GFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL-ETGIPIYEAEPLL 145
F TS G GFT ELF+GR AM GFA + E +TG GILAQL L + G+P E L
Sbjct: 72 FDTSEGIAGFTPFAELFIGRTAMGGFATGCIQELLTGDGILAQLGLVQEGVP---NEFLF 128
Query: 146 LFFILFTL 153
FFI F L
Sbjct: 129 QFFIAFLL 136
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 44/77 (57%), Gaps = 11/77 (14%)
Query: 199 IFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLN-IETGIPINEIEPLVLFNVIF 257
I GFT ELF+GR A G A I E++TG G LAQL ++ G+P NE LF
Sbjct: 78 IAGFTPFAELFIGRTAMGGFATGCIQELLTGDGILAQLGLVQEGVP-NEF----LFQ--- 129
Query: 258 FFVAAL--NPGTGKFVT 272
FF+A L + TG FVT
Sbjct: 130 FFIAFLLGSSFTGCFVT 146
>gi|384249734|gb|EIE23215.1| hypothetical protein COCSUDRAFT_63572 [Coccomyxa subellipsoidea
C-169]
Length = 328
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 67 LFKSKTKAPPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGI 126
L ++ T P+ K G+ G FGF E++VGR+AM+GF S++ E ITGKG
Sbjct: 44 LARASTDTKPEIAKVADSIGLPTDEGLFGFKPFPEVWVGRLAMMGFLTSVVEEFITGKGT 103
Query: 127 LAQLNLETGIPIYEAEPLLLFFILF 151
L Q+ ET + PL F ++F
Sbjct: 104 LRQIGFET-----PSTPLFAFLLVF 123
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 189 SALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIE 248
++GL +FGF E++VGRLA +G S++ E ITGKG L Q+ ET
Sbjct: 60 DSIGLPTDEGLFGFKPFPEVWVGRLAMMGFLTSVVEEFITGKGTLRQIGFET-----PST 114
Query: 249 PLVLFNVIFF 258
PL F ++FF
Sbjct: 115 PLFAFLLVFF 124
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQL 130
F + + EL GR AMIGF +++ E TG+GIL QL
Sbjct: 274 FDYARNVELTNGRWAMIGFLTAIIIEAATGRGILVQL 310
>gi|428221961|ref|YP_007106131.1| Chlorophyll A-B binding protein [Synechococcus sp. PCC 7502]
gi|427995301|gb|AFY73996.1| Chlorophyll A-B binding protein [Synechococcus sp. PCC 7502]
Length = 99
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%)
Query: 92 GGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLET 134
G FGF+ EL+ GR+AMIGF A+L GE TGKGIL Q+ + T
Sbjct: 19 GVFGFSNFAELWNGRMAMIGFVAALAGEVTTGKGILGQIGINT 61
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 196 GGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIET 240
G +FGF+ EL+ GR+A +G +L GE+ TGKG L Q+ I T
Sbjct: 17 GQGVFGFSNFAELWNGRMAMIGFVAALAGEVTTGKGILGQIGINT 61
>gi|443477681|ref|ZP_21067508.1| hypothetical protein Pse7429DRAFT_3157 [Pseudanabaena biceps PCC
7429]
gi|443017143|gb|ELS31654.1| hypothetical protein Pse7429DRAFT_3157 [Pseudanabaena biceps PCC
7429]
Length = 113
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 91 SGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFIL 150
+G FGF+ E + GR+AMIG A E +TGKGILAQ+ + GI + A LFF
Sbjct: 39 AGVFGFSNFAETWNGRMAMIGLVAGFANEVLTGKGILAQVGITGGISVLFA----LFFTG 94
Query: 151 FTLLGAIG 158
FT+ +G
Sbjct: 95 FTVATLLG 102
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 196 GGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPI 244
G +FGF+ E + GR+A +G+ E++TGKG LAQ+ I GI +
Sbjct: 38 GAGVFGFSNFAETWNGRMAMIGLVAGFANEVLTGKGILAQVGITGGISV 86
>gi|307105347|gb|EFN53597.1| hypothetical protein CHLNCDRAFT_136822 [Chlorella variabilis]
Length = 207
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 80/182 (43%), Gaps = 36/182 (19%)
Query: 96 FTKQNELFVGRVAMIGFAASLLGEGITGKGILAQ--------LNLETGIPIYEAEPLLLF 147
FT++ E +GRVA +GFAASL+GE + G G + Q L+ ETGI + L L
Sbjct: 27 FTRRREHAIGRVAAVGFAASLVGELLAGIGPITQASSTEAGYLHYETGISY---KWLYLA 83
Query: 148 FILFTLLGAIGALGDRGKFVDEPDEPTGLGGA------VIPPGKGLRSALGLKEGGPIFG 201
T G +GA+ D P L A V+ P K R
Sbjct: 84 LAALTGWGLLGAVLPGSPTYD----PQNLRDADKRAVVVVNPLKNPRK------------ 127
Query: 202 FTKSNELFVGRLAQLGIAFSLIGEIITGKGA-LAQLN-IETGIPINEIEPLVLFNVIFFF 259
F NE+ VGR+A G A + + E + G A LA L I+ G + P + ++ F
Sbjct: 128 FLVQNEVLVGRIAMAGFAGACVLEYLWGGEAPLAHLGLIQPGTQLTS-APWWVGGLVLLF 186
Query: 260 VA 261
+A
Sbjct: 187 LA 188
>gi|397574365|gb|EJK49165.1| hypothetical protein THAOC_31988 [Thalassiosira oceanica]
Length = 210
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 64/145 (44%), Gaps = 7/145 (4%)
Query: 98 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLE-TGIPIYEAEPLLLFFILFTLLGA 156
++ E+ GRVAM+ L+GE + G L + I + P ++ T++GA
Sbjct: 65 REAEVTHGRVAMLAVLGFLVGEAVEGSSFLFDAQISGPAITHFTQVPDGWDALIVTMIGA 124
Query: 157 IGALGDRGKFVD----EPDEPTGLGGAVIPPGKGLRSALGLKEGGPI-FGFTKSNELFVG 211
A + +VD PD+P L P G LGLK P F ++ EL G
Sbjct: 125 AEAQRAQKGWVDPAEQAPDQPGTLKADYYPGDIGF-DPLGLKPEDPEEFNIMQTKELQNG 183
Query: 212 RLAQLGIAFSLIGEIITGKGALAQL 236
RLA L A L E + GKG L L
Sbjct: 184 RLAMLAAAGFLAQEAVNGKGILETL 208
>gi|397628336|gb|EJK68853.1| hypothetical protein THAOC_09937 [Thalassiosira oceanica]
Length = 210
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 64/145 (44%), Gaps = 7/145 (4%)
Query: 98 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLE-TGIPIYEAEPLLLFFILFTLLGA 156
++ E+ GRVAM+ L+GE + G L + I + P ++ T++GA
Sbjct: 65 REAEVTHGRVAMLAVLGFLVGEAVEGSSFLFDAQISGPAITHFTQVPDGWDALIVTMIGA 124
Query: 157 IGALGDRGKFVD----EPDEPTGLGGAVIPPGKGLRSALGLKEGGPI-FGFTKSNELFVG 211
A + +VD PD+P L P G LGLK P F ++ EL G
Sbjct: 125 AEAQRAQKGWVDPAEQAPDQPGTLKADYYPGDIGF-DPLGLKPEDPEEFNIMQTKELQNG 183
Query: 212 RLAQLGIAFSLIGEIITGKGALAQL 236
RLA L A L E + GKG L L
Sbjct: 184 RLAMLAAAGFLAQEAVNGKGILETL 208
>gi|303285790|ref|XP_003062185.1| photosystem II PsbS protein [Micromonas pusilla CCMP1545]
gi|226456596|gb|EEH53897.1| photosystem II PsbS protein [Micromonas pusilla CCMP1545]
Length = 211
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 204 KSNELFVGRLAQLGIAFSLIGEIIT-GKGALAQLNIETGIPINEIEPLVLFNV--IFFFV 260
+ E+F GRLA LGI F++ G+ +T G G L QL ETG+P+ E+E F + +FF V
Sbjct: 133 RPYEVFNGRLAMLGITFAIAGDKVTGGMGPLEQLRGETGVPVIEVELFAAFFLFGVFFNV 192
Query: 261 AALNPGTGK 269
A GK
Sbjct: 193 VATGVTVGK 201
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 98 KQNELFVGRVAMIGFAASLLGEGITG-KGILAQLNLETGIPIYEAEPLLLFFIL 150
+ E+F GR+AM+G ++ G+ +TG G L QL ETG+P+ E E FF+
Sbjct: 133 RPYEVFNGRLAMLGITFAIAGDKVTGGMGPLEQLRGETGVPVIEVELFAAFFLF 186
>gi|302849018|ref|XP_002956040.1| hypothetical protein VOLCADRAFT_109992 [Volvox carteri f.
nagariensis]
gi|300258766|gb|EFJ43000.1| hypothetical protein VOLCADRAFT_109992 [Volvox carteri f.
nagariensis]
Length = 297
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 31/41 (75%)
Query: 92 GGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
G FGFT +E++VGR +MIGF +S++ E TGKG LAQ+ L
Sbjct: 53 GYFGFTPFSEMWVGRWSMIGFVSSIVVEFATGKGTLAQIGL 93
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 200 FGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNI 238
FGFT +E++VGR + +G S++ E TGKG LAQ+ +
Sbjct: 55 FGFTPFSEMWVGRWSMIGFVSSIVVEFATGKGTLAQIGL 93
>gi|133902318|gb|ABO41847.1| photosystem II protein [Gossypium hirsutum]
Length = 59
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 42/64 (65%), Gaps = 8/64 (12%)
Query: 1 MAQTMLLMSGVSTSHAG--NLKRDS-LVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASS 57
MAQTML+MS S S + NLKRD L+ FQ Q L+PKP SH +FNP SN A+S
Sbjct: 1 MAQTMLVMSSTSVSTSHVVNLKRDHPLLHFQAQGLKPKPSSHFLFNPHSN-----TVAAS 55
Query: 58 SSKA 61
SSKA
Sbjct: 56 SSKA 59
>gi|22297989|ref|NP_681236.1| CAB/ELIP/HLIP superfamily protein [Thermosynechococcus elongatus
BP-1]
gi|22294167|dbj|BAC07998.1| CAB/ELIP/HLIP superfamily protein [Thermosynechococcus elongatus
BP-1]
Length = 56
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Query: 78 TKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
TK K ED + FGFT Q E++ GR+AMIGF A+LL E IT +G+L
Sbjct: 4 TKTIKAEDR---NAWVFGFTPQAEIWNGRLAMIGFVAALLTELITKQGVL 50
>gi|428201033|ref|YP_007079622.1| Chlorophyll A-B binding protein [Pleurocapsa sp. PCC 7327]
gi|427978465|gb|AFY76065.1| Chlorophyll A-B binding protein [Pleurocapsa sp. PCC 7327]
Length = 60
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 75 PPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLE 133
P T+ PK+E+ FGF E GR AMIGF +LL E ITGKG+LA L L+
Sbjct: 8 PQPTQTPKLEEP------KFGFNDYAERLNGRAAMIGFVLTLLIEYITGKGLLAWLGLK 60
>gi|145347781|ref|XP_001418340.1| Photosystem II protein [Ostreococcus lucimarinus CCE9901]
gi|144578569|gb|ABO96633.1| Photosystem II protein [Ostreococcus lucimarinus CCE9901]
Length = 223
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 204 KSNELFVGRLAQLGIAFSLIGEIITGK-GALAQLNIETGIPI--NEIEPLVLFNVIFFFV 260
K ELF GRLA LG AF+ +G++ TG G L Q+ +E+GIPI EI LV + F V
Sbjct: 147 KPYELFNGRLAMLGTAFAFVGDVETGGLGPLEQVQLESGIPIIDEEIFALVFLAGVSFNV 206
Query: 261 AA 262
A
Sbjct: 207 VA 208
Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 98 KQNELFVGRVAMIGFAASLLGEGITGK-GILAQLNLETGIPIYEAEPLLLFFI 149
K ELF GR+AM+G A + +G+ TG G L Q+ LE+GIPI + E L F+
Sbjct: 147 KPYELFNGRLAMLGTAFAFVGDVETGGLGPLEQVQLESGIPIIDEEIFALVFL 199
>gi|168056098|ref|XP_001780059.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668557|gb|EDQ55162.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 222
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%)
Query: 87 IFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQL 130
+ T GFG+T++NE+ GR AMIGF ++ E +TGKG LA L
Sbjct: 172 VVETEEGFGWTRKNEIINGRAAMIGFFMLIIQELVTGKGFLAGL 215
Score = 38.1 bits (87), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 200 FGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQL 236
FG+T+ NE+ GR A +G +I E++TGKG LA L
Sbjct: 179 FGWTRKNEIINGRAAMIGFFMLIIQELVTGKGFLAGL 215
>gi|87302267|ref|ZP_01085092.1| putative high light inducible protein [Synechococcus sp. WH 5701]
gi|87283192|gb|EAQ75148.1| putative high light inducible protein [Synechococcus sp. WH 5701]
Length = 73
Score = 45.4 bits (106), Expect = 0.025, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 76 PKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
P +P++ G+ G+GF ++ EL GR+AM+GF +L E +G+GIL Q+ L
Sbjct: 12 PAVVEPRMYRASPGSESGWGFHRRAELLNGRLAMLGFVIGVLVEAFSGQGILHQIGL 68
>gi|159486151|ref|XP_001701107.1| high intensity light-inducible lhc-like gene [Chlamydomonas
reinhardtii]
gi|54649972|dbj|BAD67137.1| Lhc-like protein Lhl4 [Chlamydomonas reinhardtii]
gi|54649974|dbj|BAD67138.1| Lhc-like protein Lhl4 [Chlamydomonas reinhardtii]
gi|158272001|gb|EDO97809.1| high intensity light-inducible lhc-like gene [Chlamydomonas
reinhardtii]
Length = 285
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 33/48 (68%)
Query: 86 GIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLE 133
G+ + G FGFT E +VGR +M+GF +S++ E TGKG LAQ+ L+
Sbjct: 45 GMDSSDGVFGFTPFAETWVGRWSMMGFVSSIVVEFATGKGTLAQVGLD 92
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 190 ALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIE 239
++G+ +FGFT E +VGR + +G S++ E TGKG LAQ+ ++
Sbjct: 43 SVGMDSSDGVFGFTPFAETWVGRWSMMGFVSSIVVEFATGKGTLAQVGLD 92
>gi|166364945|ref|YP_001657218.1| CAB/ELIP/HLIP-related protein [Microcystis aeruginosa NIES-843]
gi|390437845|ref|ZP_10226362.1| Genome sequencing data, contig C311 [Microcystis sp. T1-4]
gi|422302656|ref|ZP_16390017.1| Genome sequencing data, contig C311 [Microcystis aeruginosa PCC
9806]
gi|425437893|ref|ZP_18818305.1| Genome sequencing data, contig C311 [Microcystis aeruginosa PCC
9432]
gi|425442899|ref|ZP_18823133.1| Genome sequencing data, contig C311 [Microcystis aeruginosa PCC
9717]
gi|425444998|ref|ZP_18825038.1| Genome sequencing data, contig C311 [Microcystis aeruginosa PCC
9443]
gi|425456882|ref|ZP_18836588.1| Genome sequencing data, contig C311 [Microcystis aeruginosa PCC
9807]
gi|425465516|ref|ZP_18844825.1| Genome sequencing data, contig C311 [Microcystis aeruginosa PCC
9809]
gi|425471758|ref|ZP_18850609.1| Genome sequencing data, contig C311 [Microcystis aeruginosa PCC
9701]
gi|443651819|ref|ZP_21130752.1| high light inducible protein [Microcystis aeruginosa DIANCHI905]
gi|159028525|emb|CAO87331.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|166087318|dbj|BAG02026.1| CAB/ELIP/HLIP-related protein [Microcystis aeruginosa NIES-843]
gi|389677026|emb|CCH94000.1| Genome sequencing data, contig C311 [Microcystis aeruginosa PCC
9432]
gi|389715932|emb|CCH99766.1| Genome sequencing data, contig C311 [Microcystis aeruginosa PCC
9717]
gi|389735113|emb|CCI01333.1| Genome sequencing data, contig C311 [Microcystis aeruginosa PCC
9443]
gi|389788064|emb|CCI16572.1| Genome sequencing data, contig C311 [Microcystis aeruginosa PCC
9806]
gi|389801919|emb|CCI18976.1| Genome sequencing data, contig C311 [Microcystis aeruginosa PCC
9807]
gi|389832226|emb|CCI24334.1| Genome sequencing data, contig C311 [Microcystis aeruginosa PCC
9809]
gi|389838780|emb|CCI30486.1| Genome sequencing data, contig C311 [Microcystis sp. T1-4]
gi|389882262|emb|CCI37227.1| Genome sequencing data, contig C311 [Microcystis aeruginosa PCC
9701]
gi|443334460|gb|ELS48972.1| high light inducible protein [Microcystis aeruginosa DIANCHI905]
Length = 56
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 75 PPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLE 133
P T+ PK+ED FGF E GR AMIGF +LL E +TG+G+L+ L L+
Sbjct: 4 PQPTQTPKLEDP------KFGFNDYAERLNGRAAMIGFVITLLIEYLTGQGLLSWLGLQ 56
>gi|302191596|tpg|DAA33886.1| TPA_inf: stress-enhanced protein 3 [Glaucocystis nostochinearum]
Length = 187
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTL 153
+GF+K E GR+AMIG +S + E +TG+ I QL++ETG+ + LL T
Sbjct: 111 YGFSKAAETVNGRIAMIGIVSSFVVEYLTGETIWEQLSIETGLEKSKLIGLLTITWAVTF 170
Query: 154 LGAI 157
L A+
Sbjct: 171 LAAL 174
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 195 EGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFN 254
E +GF+K+ E GR+A +GI S + E +TG+ QL+IETG+ +++ L+
Sbjct: 106 EEDKFYGFSKAAETVNGRIAMIGIVSSFVVEYLTGETIWEQLSIETGLEKSKLIGLLTIT 165
Query: 255 VIFFFVAAL 263
F+AAL
Sbjct: 166 WAVTFLAAL 174
>gi|425450765|ref|ZP_18830588.1| Genome sequencing data, contig C311 [Microcystis aeruginosa PCC
7941]
gi|389768260|emb|CCI06586.1| Genome sequencing data, contig C311 [Microcystis aeruginosa PCC
7941]
Length = 56
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 75 PPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLE 133
P T+ PK+ED FGF E GR AMIGF +LL E +TG+G+L+ L L+
Sbjct: 4 PQPTQTPKLEDP------KFGFNDYAERLNGRAAMIGFVITLLIEYLTGQGLLSWLGLQ 56
>gi|302191590|tpg|DAA33883.1| TPA_inf: stress-enhanced protein 2 [Cyanophora paradoxa]
Length = 180
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 30/43 (69%)
Query: 91 SGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLE 133
+G FGF +EL+ GR+AM+G A L E +TG+GI AQ+ L+
Sbjct: 101 TGRFGFGSNSELWNGRLAMLGLVAGLGQEAVTGQGIFAQIGLD 143
Score = 37.7 bits (86), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 200 FGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIE 239
FGF ++EL+ GRLA LG+ L E +TG+G AQ+ ++
Sbjct: 104 FGFGSNSELWNGRLAMLGLVAGLGQEAVTGQGIFAQIGLD 143
>gi|242047418|ref|XP_002461455.1| hypothetical protein SORBIDRAFT_02g002950 [Sorghum bicolor]
gi|241924832|gb|EER97976.1| hypothetical protein SORBIDRAFT_02g002950 [Sorghum bicolor]
Length = 111
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 42 FNPLSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKPKVEDGIFGTSGGFGFTKQNE 101
PL L A S + VAL S K PP + P+V+ + + GFT+ E
Sbjct: 15 HRPLCRNRL--APCLPSPRPARAVALRVSAAKLPPGVEVPRVQPKL--SEPFLGFTQTAE 70
Query: 102 LFVGRVAMIGFAASLLGEGITGKGILAQLNLETG 135
++ R MIG + + E + KGIL + +E G
Sbjct: 71 IWNSRACMIGLIGTFIVELVLNKGILQMIGVEVG 104
>gi|88911210|gb|ABD58895.1| chloroplast Lhc-like protein 2 [Mesostigma viride]
Length = 323
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 80 KPKVEDGI-----FGTSGG-FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLE 133
+P D I F TS G FGFT EL+ GR+AM+GFA E +TG GIL Q+ L
Sbjct: 72 EPTPSDAIAQGMGFDTSDGIFGFTPFAELWAGRLAMMGFATGAAEELLTGHGILRQIGLT 131
Query: 134 T 134
T
Sbjct: 132 T 132
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%)
Query: 183 PGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIET 240
P + +G IFGFT EL+ GRLA +G A E++TG G L Q+ + T
Sbjct: 75 PSDAIAQGMGFDTSDGIFGFTPFAELWAGRLAMMGFATGAAEELLTGHGILRQIGLTT 132
>gi|302191594|tpg|DAA33885.1| TPA_inf: stress-enhanced protein 2 [Glaucocystis nostochinearum]
Length = 168
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 92 GGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILF 151
G FGF+ EL+ GR+AM+GF A++ E +TG+ I Q+ L+ P+ E +L FF+
Sbjct: 100 GNFGFSNNAELWNGRLAMLGFGAAITKEFLTGESIFGQVGLDR--PLDEV-LVLTFFLGL 156
Query: 152 TLLGAIG 158
T+ +G
Sbjct: 157 TVATMVG 163
Score = 37.4 bits (85), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 200 FGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLF 253
FGF+ + EL+ GRLA LG ++ E +TG+ Q+ ++ P++E+ L F
Sbjct: 102 FGFSNNAELWNGRLAMLGFGAAITKEFLTGESIFGQVGLDR--PLDEVLVLTFF 153
>gi|113953915|ref|YP_730298.1| high light inducible protein [Synechococcus sp. CC9311]
gi|113881266|gb|ABI46224.1| possible high light inducible protein [Synechococcus sp. CC9311]
Length = 106
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 27 FQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKPKVEDG 86
F T+ R +PF L P++ +L + S VA + K+P++E
Sbjct: 4 FLTERSRHRPFWSLSETPMTTTTLRYNGRAFIYAPTSLVAR-DGEEHGNVYAKEPRLE-- 60
Query: 87 IFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
+ + G+GF ++ E +GR+AMIGF A+ E I+G+G L + L
Sbjct: 61 LATPNAGWGFHERAEKLIGRLAMIGFVAATATELISGEGWLRTIGL 106
>gi|303287480|ref|XP_003063029.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455665|gb|EEH52968.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 307
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%)
Query: 86 GIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPI 138
G+ + G FGFT EL+ GR+AM+GF L E TG GILAQ+ + PI
Sbjct: 65 GLDTSEGVFGFTPFAELWTGRLAMMGFTVGLAEELWTGDGILAQIGIACPNPI 117
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 188 RSA--LGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPI 244
RSA +GL +FGFT EL+ GRLA +G L E+ TG G LAQ+ I PI
Sbjct: 59 RSARSMGLDTSEGVFGFTPFAELWTGRLAMMGFTVGLAEELWTGDGILAQIGIACPNPI 117
>gi|359463984|ref|ZP_09252547.1| high light inducible protein [Acaryochloris sp. CCMEE 5410]
Length = 82
Score = 44.7 bits (104), Expect = 0.044, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 198 PIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLN 237
P++GFT E F GRLA G +L+ E++TGKG L QL+
Sbjct: 37 PVWGFTSYAETFSGRLAMYGFFIALVTEVLTGKGILGQLS 76
Score = 43.1 bits (100), Expect = 0.15, Method: Composition-based stats.
Identities = 21/38 (55%), Positives = 27/38 (71%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLN 131
+GFT E F GR+AM GF +L+ E +TGKGIL QL+
Sbjct: 39 WGFTSYAETFSGRLAMYGFFIALVTEVLTGKGILGQLS 76
>gi|427711209|ref|YP_007059833.1| Chlorophyll A-B binding protein [Synechococcus sp. PCC 6312]
gi|427375338|gb|AFY59290.1| Chlorophyll A-B binding protein [Synechococcus sp. PCC 6312]
Length = 57
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Query: 78 TKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
TK K ED + FGFT Q E++ GR+AMIGF A+L+ E +T +G+L
Sbjct: 5 TKVAKTEDR---NAWVFGFTPQAEIWNGRLAMIGFVAALVTELLTKQGVL 51
>gi|302813262|ref|XP_002988317.1| LHC-related protein [Selaginella moellendorffii]
gi|300144049|gb|EFJ10736.1| LHC-related protein [Selaginella moellendorffii]
Length = 205
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 100 NELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIG 158
E VGR AM+G A+L+ E +TGKGI QL L+ P+ P+LL F + G +G
Sbjct: 83 QERLVGRFAMVGVVAALVMEVVTGKGIFGQLGLD---PLRVRYPVLLGFTFLLVAGLVG 138
Score = 37.4 bits (85), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 206 NELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAAL 263
E VGR A +G+ +L+ E++TGKG QL ++ P+ P VL F VA L
Sbjct: 83 QERLVGRFAMVGVVAALVMEVVTGKGIFGQLGLD---PLRVRYP-VLLGFTFLLVAGL 136
>gi|302819500|ref|XP_002991420.1| LHC-related protein [Selaginella moellendorffii]
gi|300140813|gb|EFJ07532.1| LHC-related protein [Selaginella moellendorffii]
Length = 205
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 100 NELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGA 159
E VGR AM+G A+L+ E +TGKGI QL L+ P+ P+LL F + G +G
Sbjct: 83 QERLVGRFAMVGVVAALVMEVVTGKGIFGQLGLD---PLRVRYPVLLGFTFLLVAGLVGG 139
Query: 160 LGDRGKFVDEPDEPTGLGGAV 180
DE P G V
Sbjct: 140 YVVINNPPDESKAPPNEGAGV 160
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 206 NELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAAL 263
E VGR A +G+ +L+ E++TGKG QL ++ P+ P VL F VA L
Sbjct: 83 QERLVGRFAMVGVVAALVMEVVTGKGIFGQLGLD---PLRVRYP-VLLGFTFLLVAGL 136
>gi|158338118|ref|YP_001519294.1| high light inducible protein [Acaryochloris marina MBIC11017]
gi|158308359|gb|ABW29976.1| high light inducible protein [Acaryochloris marina MBIC11017]
Length = 51
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 198 PIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLN 237
P++GFT E F GRLA G +L+ E++TGKG L QL+
Sbjct: 6 PVWGFTSYAETFSGRLAMYGFFIALVTEVLTGKGILGQLS 45
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 27/38 (71%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLN 131
+GFT E F GR+AM GF +L+ E +TGKGIL QL+
Sbjct: 8 WGFTSYAETFSGRLAMYGFFIALVTEVLTGKGILGQLS 45
>gi|255085648|ref|XP_002505255.1| light harvesting like protein [Micromonas sp. RCC299]
gi|226520524|gb|ACO66513.1| light harvesting like protein [Micromonas sp. RCC299]
Length = 278
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 88 FGTSGGF-GFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLL 146
F TS G GFT ELF+GR AM GFA + E ITG GILAQL G+ E +
Sbjct: 64 FDTSEGIAGFTPFAELFIGRTAMGGFATGIAQELITGDGILAQL----GVRDLPNEQIFD 119
Query: 147 FFI 149
FF+
Sbjct: 120 FFV 122
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 42/76 (55%), Gaps = 11/76 (14%)
Query: 199 IFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFF 258
I GFT ELF+GR A G A + E+ITG G LAQL + +P +I F+ F
Sbjct: 70 IAGFTPFAELFIGRTAMGGFATGIAQELITGDGILAQLGVRD-LPNEQI-----FD---F 120
Query: 259 FVA--ALNPGTGKFVT 272
FVA AL+ G +VT
Sbjct: 121 FVATLALSTVAGVWVT 136
>gi|428218023|ref|YP_007102488.1| hypothetical protein Pse7367_1782 [Pseudanabaena sp. PCC 7367]
gi|427989805|gb|AFY70060.1| hypothetical protein Pse7367_1782 [Pseudanabaena sp. PCC 7367]
Length = 126
Score = 44.3 bits (103), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 81 PKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQL 130
P + + FGFTK E F GR+AMIGF + L+ E ITG+G++ L
Sbjct: 74 PVTPEPYYQNESKFGFTKFAETFNGRLAMIGFVSLLITEMITGQGLITNL 123
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 24/37 (64%)
Query: 200 FGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQL 236
FGFTK E F GRLA +G LI E+ITG+G + L
Sbjct: 87 FGFTKFAETFNGRLAMIGFVSLLITEMITGQGLITNL 123
>gi|411119084|ref|ZP_11391464.1| Chlorophyll A-B binding protein [Oscillatoriales cyanobacterium
JSC-12]
gi|410710947|gb|EKQ68454.1| Chlorophyll A-B binding protein [Oscillatoriales cyanobacterium
JSC-12]
Length = 58
Score = 44.3 bits (103), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 28/39 (71%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGFT Q EL+ GR AMIGF A+L+ E IT +G+L L L
Sbjct: 19 FGFTPQAELWNGRFAMIGFVAALITELITNQGVLHFLGL 57
>gi|443328437|ref|ZP_21057034.1| Chlorophyll A-B binding protein [Xenococcus sp. PCC 7305]
gi|442791891|gb|ELS01381.1| Chlorophyll A-B binding protein [Xenococcus sp. PCC 7305]
Length = 56
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 78 TKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLE 133
T PK+ED FGF K E GR AMIGF +++ E +TGKG+LA L L+
Sbjct: 7 TVTPKLEDP------KFGFNKYAERLNGRAAMIGFTLAIVIEYLTGKGLLAWLGLQ 56
Score = 37.0 bits (84), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 198 PIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIE 239
P FGF K E GR A +G +++ E +TGKG LA L ++
Sbjct: 15 PKFGFNKYAERLNGRAAMIGFTLAIVIEYLTGKGLLAWLGLQ 56
>gi|318041094|ref|ZP_07973050.1| CAB/ELIP/HLIP superfamily protein [Synechococcus sp. CB0101]
Length = 61
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 28/38 (73%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLN 131
+GFT Q E + GR+AM+GF +L E +TG+G+LAQL
Sbjct: 18 WGFTDQAERWNGRLAMLGFVIALATELLTGQGVLAQLR 55
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 200 FGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLN 237
+GFT E + GRLA LG +L E++TG+G LAQL
Sbjct: 18 WGFTDQAERWNGRLAMLGFVIALATELLTGQGVLAQLR 55
>gi|220907739|ref|YP_002483050.1| CAB/ELIP/HLIP superfamily protein [Cyanothece sp. PCC 7425]
gi|219864350|gb|ACL44689.1| CAB/ELIP/HLIP superfamily protein [Cyanothece sp. PCC 7425]
Length = 55
Score = 43.5 bits (101), Expect = 0.098, Method: Composition-based stats.
Identities = 19/34 (55%), Positives = 27/34 (79%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
FGFT Q E++ GR+AMIGF A++L E +T +G+L
Sbjct: 16 FGFTPQAEIWNGRLAMIGFVAAILTEVLTKQGVL 49
>gi|427702171|ref|YP_007045393.1| hypothetical protein Cyagr_0866 [Cyanobium gracile PCC 6307]
gi|427345339|gb|AFY28052.1| hypothetical protein Cyagr_0866 [Cyanobium gracile PCC 6307]
Length = 97
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 76 PKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETG 135
P+ +P++ G+ G+GF + E GR+AM+GF L E +TG GIL Q+ L
Sbjct: 34 PQVIEPRMYLASPGSESGWGFHGRAERLNGRLAMLGFGIGLTIEALTGSGILGQMGLGAL 93
Query: 136 IP 137
+P
Sbjct: 94 LP 95
>gi|425459449|ref|ZP_18838935.1| Genome sequencing data, contig C311 [Microcystis aeruginosa PCC
9808]
gi|389822803|emb|CCI29452.1| Genome sequencing data, contig C311 [Microcystis aeruginosa PCC
9808]
Length = 56
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 75 PPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLE 133
P T+ PK+E+ FGF E GR AMIGF +LL E +TG+G+L+ L L+
Sbjct: 4 PQPTQTPKLENP------KFGFNDYAERLNGRAAMIGFVITLLIEYLTGQGLLSWLGLQ 56
>gi|434398540|ref|YP_007132544.1| HLIP, single helix LHC light protein [Stanieria cyanosphaera PCC
7437]
gi|428269637|gb|AFZ35578.1| HLIP, single helix LHC light protein [Stanieria cyanosphaera PCC
7437]
Length = 56
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 78 TKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLE 133
T PK+ED FGF E GR AMIGFA +L+ E +TG+G+L+ L L+
Sbjct: 7 TTTPKLEDP------KFGFNDYAERLNGRAAMIGFALTLVIEYLTGQGLLSWLGLQ 56
>gi|428218002|ref|YP_007102467.1| hypothetical protein Pse7367_1761 [Pseudanabaena sp. PCC 7367]
gi|427989784|gb|AFY70039.1| hypothetical protein Pse7367_1761 [Pseudanabaena sp. PCC 7367]
Length = 105
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 92 GGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLET 134
G FGF+ E++ GR+AM+G A GE +TGKGIL Q+ + T
Sbjct: 19 GVFGFSNFAEVWNGRMAMLGVVAGFAGEALTGKGILEQVGIST 61
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 12/61 (19%)
Query: 180 VIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIE 239
V P GKG +FGF+ E++ GR+A LG+ GE +TGKG L Q+ I
Sbjct: 13 VNPSGKG------------VFGFSNFAEVWNGRMAMLGVVAGFAGEALTGKGILEQVGIS 60
Query: 240 T 240
T
Sbjct: 61 T 61
>gi|219117950|ref|XP_002179760.1| protein fucoxanthin chlorophyll a/c protein [Phaeodactylum
tricornutum CCAP 1055/1]
gi|217408813|gb|EEC48746.1| protein fucoxanthin chlorophyll a/c protein [Phaeodactylum
tricornutum CCAP 1055/1]
Length = 209
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 66/147 (44%), Gaps = 9/147 (6%)
Query: 98 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAI 157
++ EL GRVAM+ L+GE + G L ++ + ++ F++L T+ AI
Sbjct: 64 REAELTHGRVAMLAVVGFLVGEAVEGSSFLFDASISGPAITHLSQVPAPFWVLLTI--AI 121
Query: 158 GALGDRGK---FVDEPDEPT---GLGGAVIPPGKGLRSALGLKEGGPIFGFT-KSNELFV 210
GA +VD D P GL PG LGLK P T ++ EL
Sbjct: 122 GASEQTRAVIGWVDPADAPVDKPGLLRDDYVPGDLGFDPLGLKPSDPEELITLQTKELQN 181
Query: 211 GRLAQLGIAFSLIGEIITGKGALAQLN 237
GRLA L A + E++ GKG L L
Sbjct: 182 GRLAMLAAAGFMAQELVNGKGILENLQ 208
>gi|168015854|ref|XP_001760465.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688479|gb|EDQ74856.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 233
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 27/33 (81%)
Query: 100 NELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
EL VGR+AM+GFAA+++ E ITGKG+L QL +
Sbjct: 108 QELQVGRLAMVGFAAAVIMEVITGKGVLGQLGI 140
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 206 NELFVGRLAQLGIAFSLIGEIITGKGALAQLNI 238
EL VGRLA +G A ++I E+ITGKG L QL I
Sbjct: 108 QELQVGRLAMVGFAAAVIMEVITGKGVLGQLGI 140
>gi|425470171|ref|ZP_18849041.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9701]
gi|389884283|emb|CCI35406.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9701]
Length = 70
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 90 TSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQL 130
+S G GFTK+ E GR+AMIGF + L E +TGKGI+A +
Sbjct: 27 SSSGLGFTKKAEKLNGRLAMIGFVSLLAIEVLTGKGIIAWI 67
>gi|434386688|ref|YP_007097299.1| Chlorophyll A-B binding protein [Chamaesiphon minutus PCC 6605]
gi|428017678|gb|AFY93772.1| Chlorophyll A-B binding protein [Chamaesiphon minutus PCC 6605]
Length = 68
Score = 42.7 bits (99), Expect = 0.16, Method: Composition-based stats.
Identities = 19/34 (55%), Positives = 27/34 (79%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
+GFT Q E++ GR AMIGF A+LL E ++G+G+L
Sbjct: 20 WGFTPQAEIWNGRFAMIGFVAALLTEYLSGQGVL 53
>gi|428207888|ref|YP_007092241.1| ferrochelatase [Chroococcidiopsis thermalis PCC 7203]
gi|428009809|gb|AFY88372.1| ferrochelatase [Chroococcidiopsis thermalis PCC 7203]
Length = 387
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 13/79 (16%)
Query: 49 SLTAAAASSSSKAFSTVALFKSKTKAPPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVA 108
LT A +S S S V+ K + K P+ + +G T E++ GR+A
Sbjct: 316 DLTIEALNSPSVKLSQVSQMKKRVKMYPQER------------WQWGMTTSAEIWNGRIA 363
Query: 109 MIGFAASLLGEGITGKGIL 127
M+GF A L+ E ITGKG+L
Sbjct: 364 MLGFIA-LIIELITGKGLL 381
>gi|434398842|ref|YP_007132846.1| putative CAB/ELIP/HLIP family protein [Stanieria cyanosphaera PCC
7437]
gi|428269939|gb|AFZ35880.1| putative CAB/ELIP/HLIP family protein [Stanieria cyanosphaera PCC
7437]
Length = 47
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 11/56 (19%)
Query: 77 KTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
+ +KPK+ GFT+ E++ GR+AM+GF + +L E ITG+GIL QL L
Sbjct: 2 QNRKPKL-----------GFTRFAEIWNGRLAMLGFVSVVLIELITGRGILTQLGL 46
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 198 PIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNI 238
P GFT+ E++ GRLA LG ++ E+ITG+G L QL +
Sbjct: 6 PKLGFTRFAEIWNGRLAMLGFVSVVLIELITGRGILTQLGL 46
>gi|186686394|ref|YP_001869590.1| high light inducible protein [Nostoc punctiforme PCC 73102]
gi|186468846|gb|ACC84647.1| CAB/ELIP/HLIP superfamily of protein [Nostoc punctiforme PCC 73102]
Length = 61
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 77 KTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
K P +ED + +GFT Q E++ GR+AMIGF+A++L E +G+G L
Sbjct: 8 KVTTPVIEDR---NAWRWGFTPQAEIWNGRLAMIGFSAAVLVELFSGQGFL 55
>gi|428212095|ref|YP_007085239.1| Chlorophyll A-B binding protein [Oscillatoria acuminata PCC 6304]
gi|428000476|gb|AFY81319.1| Chlorophyll A-B binding protein [Oscillatoria acuminata PCC 6304]
Length = 59
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGF K E GR AMIGFA +LL E +TG+G+L+ L L
Sbjct: 20 FGFNKYAERLNGRAAMIGFALTLLIEYLTGQGLLSWLGL 58
>gi|87303550|ref|ZP_01086333.1| possible high light inducible protein [Synechococcus sp. WH 5701]
gi|87281963|gb|EAQ73926.1| possible high light inducible protein [Synechococcus sp. WH 5701]
Length = 71
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 26/30 (86%)
Query: 101 ELFVGRVAMIGFAASLLGEGITGKGILAQL 130
EL GRVAM+GF+A+++GE +TGKGI+ QL
Sbjct: 33 ELLNGRVAMLGFSAAIVGEWLTGKGIVGQL 62
>gi|428776933|ref|YP_007168720.1| CAB/ELIP/HLIP family protein [Halothece sp. PCC 7418]
gi|428691212|gb|AFZ44506.1| putative CAB/ELIP/HLIP family protein [Halothece sp. PCC 7418]
Length = 54
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 31/57 (54%), Gaps = 11/57 (19%)
Query: 76 PKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
P T++PK FGF K E GR AMIGF A LL E +GKG+LA L L
Sbjct: 8 PNTQEPK-----------FGFNKYAERLNGRAAMIGFIALLLIEFFSGKGLLAWLGL 53
>gi|425455756|ref|ZP_18835467.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9807]
gi|389803285|emb|CCI17763.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9807]
Length = 70
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 90 TSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQL 130
+S G GFTK+ E GR+AMIGF + L E +TGKGI+A +
Sbjct: 27 SSSGLGFTKKAEKLNGRLAMIGFVSLLAIELLTGKGIIAWI 67
>gi|218438949|ref|YP_002377278.1| CAB/ELIP/HLIP superfamily [Cyanothece sp. PCC 7424]
gi|218171677|gb|ACK70410.1| CAB/ELIP/HLIP superfamily [Cyanothece sp. PCC 7424]
Length = 46
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 30/39 (76%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGFT E++ GR+AMIGFAA+L+ E ++G+G+L NL
Sbjct: 7 FGFTSFAEVWNGRLAMIGFAAALIIELVSGQGLLHFWNL 45
>gi|428223317|ref|YP_007107487.1| Chlorophyll A-B binding protein [Synechococcus sp. PCC 7502]
gi|427996657|gb|AFY75352.1| Chlorophyll A-B binding protein [Synechococcus sp. PCC 7502]
Length = 55
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGF E + GR+AMIGF +L+ E +TG GIL+QL L
Sbjct: 16 FGFNAFAETWNGRLAMIGFLTALINEYVTGHGILSQLGL 54
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 198 PIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQL 236
P FGF E + GRLA +G +LI E +TG G L+QL
Sbjct: 14 PDFGFNAFAETWNGRLAMIGFLTALINEYVTGHGILSQL 52
>gi|428307577|ref|YP_007144402.1| CAB/ELIP/HLIP family protein [Crinalium epipsammum PCC 9333]
gi|428249112|gb|AFZ14892.1| CAB/ELIP/HLIP-related protein [Crinalium epipsammum PCC 9333]
Length = 56
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 74 APPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLE 133
P T PK+E+ FGF E GR AMIGF L+ E ITGKG+L+ L L+
Sbjct: 3 TPQPTTLPKLEEP------KFGFNDYAERLNGRAAMIGFTIMLVIEYITGKGVLSWLGLQ 56
>gi|332709854|ref|ZP_08429810.1| hypothetical protein LYNGBM3L_46230 [Moorea producens 3L]
gi|332351225|gb|EGJ30809.1| hypothetical protein LYNGBM3L_46230 [Moorea producens 3L]
Length = 48
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGFT +E + GR+AM+GFA L E ITG GIL QL L
Sbjct: 9 FGFTNFSETWNGRLAMLGFAIGLATELITGHGILEQLGL 47
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 25/39 (64%)
Query: 200 FGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNI 238
FGFT +E + GRLA LG A L E+ITG G L QL +
Sbjct: 9 FGFTNFSETWNGRLAMLGFAIGLATELITGHGILEQLGL 47
>gi|307152335|ref|YP_003887719.1| HLIP; single helix LHC light protein [Cyanothece sp. PCC 7822]
gi|306982563|gb|ADN14444.1| HLIP; single helix LHC light protein [Cyanothece sp. PCC 7822]
Length = 59
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 7/64 (10%)
Query: 70 SKTKAPPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQ 129
S+T+ P ++ PK+E+ FGF + E GR AMIGF +L+ E +TG+G+L+
Sbjct: 3 SETQQQP-SQTPKLEEP------KFGFNEYAERLNGRAAMIGFVLTLVIEYVTGQGLLSW 55
Query: 130 LNLE 133
L L+
Sbjct: 56 LGLQ 59
>gi|37521012|ref|NP_924389.1| CAB/ELIP/HLIP-related protein [Gloeobacter violaceus PCC 7421]
gi|35212008|dbj|BAC89384.1| CAB/ELIP/HLIP-related protein [Gloeobacter violaceus PCC 7421]
Length = 52
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 28/39 (71%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGF EL GR+AMIGFAA+L+ E TGKG+L+ L L
Sbjct: 13 FGFNPYAELLNGRLAMIGFAAALVVELATGKGVLSFLGL 51
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 25/39 (64%)
Query: 198 PIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQL 236
P FGF EL GRLA +G A +L+ E+ TGKG L+ L
Sbjct: 11 PKFGFNPYAELLNGRLAMIGFAAALVVELATGKGVLSFL 49
>gi|113955174|ref|YP_731055.1| high light inducible protein [Synechococcus sp. CC9311]
gi|113882525|gb|ABI47483.1| putative high light inducible protein [Synechococcus sp. CC9311]
Length = 78
Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats.
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 98 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
K+ ELF GR AMIGF ++ EG+TG+GIL Q+ L
Sbjct: 25 KKVELFNGRAAMIGFVIGVITEGLTGQGILHQIGL 59
>gi|428312165|ref|YP_007123142.1| Chlorophyll A-B binding protein [Microcoleus sp. PCC 7113]
gi|428253777|gb|AFZ19736.1| Chlorophyll A-B binding protein [Microcoleus sp. PCC 7113]
Length = 50
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 27/34 (79%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
FGFT Q E + GR+AMIGF A+L+ E +TG+G+L
Sbjct: 11 FGFTPQAENWNGRLAMIGFVAALITEFVTGQGVL 44
>gi|428224343|ref|YP_007108440.1| CAB/ELIP/HLIP family protein [Geitlerinema sp. PCC 7407]
gi|427984244|gb|AFY65388.1| CAB/ELIP/HLIP family protein [Geitlerinema sp. PCC 7407]
Length = 47
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGFT E + GR+AM+GF L+ E +TG+GIL+QL L
Sbjct: 8 FGFTNFAETWNGRLAMLGFVVGLITELVTGQGILSQLGL 46
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 198 PIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNI 238
P FGFT E + GRLA LG LI E++TG+G L+QL +
Sbjct: 6 PKFGFTNFAETWNGRLAMLGFVVGLITELVTGQGILSQLGL 46
>gi|428781289|ref|YP_007173075.1| Chlorophyll A-B binding protein [Dactylococcopsis salina PCC 8305]
gi|428695568|gb|AFZ51718.1| Chlorophyll A-B binding protein [Dactylococcopsis salina PCC 8305]
Length = 56
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 11/57 (19%)
Query: 76 PKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
P T++PK FGF K E GR AMIGF + LL E TGKG+L+ L L
Sbjct: 10 PNTQEPK-----------FGFNKYAERLNGRAAMIGFVSLLLVEFFTGKGMLSWLGL 55
>gi|434393236|ref|YP_007128183.1| high light inducible protein [Gloeocapsa sp. PCC 7428]
gi|428265077|gb|AFZ31023.1| high light inducible protein [Gloeocapsa sp. PCC 7428]
Length = 59
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 77 KTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
K P +ED + +GFT Q E++ GR+AMIGF A++L E +G+G+L
Sbjct: 6 KVTTPVMEDR---NAWRWGFTPQAEIWNGRLAMIGFLAAVLIELFSGQGVL 53
>gi|425462260|ref|ZP_18841734.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9808]
gi|389824670|emb|CCI26149.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9808]
Length = 70
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 90 TSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQL 130
+S GFTK+ E GR+AMIGF + L+ E +TGKGI+A +
Sbjct: 27 SSSSLGFTKKAEKLNGRLAMIGFVSLLVIELLTGKGIIAWI 67
>gi|428224647|ref|YP_007108744.1| CAB/ELIP/HLIP family protein [Geitlerinema sp. PCC 7407]
gi|427984548|gb|AFY65692.1| CAB/ELIP/HLIP-related protein [Geitlerinema sp. PCC 7407]
Length = 56
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 75 PPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
P T PK ED FGF++ E GR AMIGF +L+ E ++G+G+L+ L L
Sbjct: 4 PQPTTTPKFEDP------KFGFSEYAERLNGRAAMIGFVLTLIIEYVSGQGLLSWLGL 55
>gi|352094548|ref|ZP_08955719.1| hypothetical protein Syn8016DRAFT_1062 [Synechococcus sp. WH 8016]
gi|351680888|gb|EHA64020.1| hypothetical protein Syn8016DRAFT_1062 [Synechococcus sp. WH 8016]
Length = 78
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 98 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
K+ ELF GR AMIGF ++ EG+TG+GIL Q+ L
Sbjct: 25 KKVELFNGRAAMIGFVIGVITEGLTGQGILHQIGL 59
>gi|412991209|emb|CCO16054.1| photosystem II 22 kda polypeptide (ISS) [Bathycoccus prasinos]
Length = 264
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 98 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFI---LFTLL 154
K+ E+F GR+AM+G AS +G+ +G + Q+ E G+P+ + E L F+ F L+
Sbjct: 190 KKYEIFNGRLAMLGITASFIGDYFLAEGPMEQVAQELGVPVIDQEIFALVFLSAASFLLV 249
Query: 155 GAIGALGDRG 164
+ +G R
Sbjct: 250 STLVRVGRRA 259
Score = 40.4 bits (93), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 24/186 (12%)
Query: 96 FTKQNELFVGRVAMIGFAAS-LLGEGITGKGILAQL-NLETGIPIYEAEPLLL------- 146
F + EL +GR AM+GFAA+ L G G + QL E + + PL L
Sbjct: 65 FIAKTELNLGRSAMLGFAATTYLDVSTNGLGPIEQLIGEEKSLVTHVVNPLNLARDVLEV 124
Query: 147 -------FFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALG--LKEGG 197
+++ L + L +P T + G P G+ A+ +K
Sbjct: 125 TGLYVESIILVWVFLSGVFLLAVTSGL-RKPSTST-MSGMSRPNGENRVDAMAGIVKSAW 182
Query: 198 -PIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVI 256
K E+F GRLA LGI S IG+ +G + Q+ E G+P+ + E +F ++
Sbjct: 183 REQVRENKKYEIFNGRLAMLGITASFIGDYFLAEGPMEQVAQELGVPVIDQE---IFALV 239
Query: 257 FFFVAA 262
F A+
Sbjct: 240 FLSAAS 245
>gi|411119186|ref|ZP_11391566.1| Chlorophyll A-B binding protein [Oscillatoriales cyanobacterium
JSC-12]
gi|410711049|gb|EKQ68556.1| Chlorophyll A-B binding protein [Oscillatoriales cyanobacterium
JSC-12]
Length = 69
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 25/34 (73%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
FGF KQ+EL GR+AM+GF A LL E TG G++
Sbjct: 30 FGFNKQSELLNGRLAMLGFVALLLLEVFTGHGVI 63
>gi|434387735|ref|YP_007098346.1| Chlorophyll A-B binding protein [Chamaesiphon minutus PCC 6605]
gi|428018725|gb|AFY94819.1| Chlorophyll A-B binding protein [Chamaesiphon minutus PCC 6605]
Length = 52
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGFT EL GR+AMIGF A+L+ E +TG+G L L L
Sbjct: 13 FGFTPSAELLNGRLAMIGFVAALITELVTGQGTLHFLGL 51
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 200 FGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL 233
FGFT S EL GRLA +G +LI E++TG+G L
Sbjct: 13 FGFTPSAELLNGRLAMIGFVAALITELVTGQGTL 46
>gi|428213152|ref|YP_007086296.1| Chlorophyll A-B binding protein [Oscillatoria acuminata PCC 6304]
gi|428001533|gb|AFY82376.1| Chlorophyll A-B binding protein [Oscillatoria acuminata PCC 6304]
Length = 72
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 69 KSKTKAPPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILA 128
K + + K+P + G + +GFT E++ GR+AMIGF A+ L E TG+G L
Sbjct: 4 KERPDVREEVKQPYFDQG---SQWKWGFTPSAEIWNGRLAMIGFLAATLIEIATGQGYLR 60
Query: 129 QLNLETGIPI 138
L TG I
Sbjct: 61 FLGFLTGTDI 70
>gi|218245542|ref|YP_002370913.1| CAB/ELIP/HLIP-like protein [Cyanothece sp. PCC 8801]
gi|257058579|ref|YP_003136467.1| HLIP; single helix LHC light protein [Cyanothece sp. PCC 8802]
gi|218166020|gb|ACK64757.1| CAB/ELIP/HLIP-related protein [Cyanothece sp. PCC 8801]
gi|256588745|gb|ACU99631.1| HLIP; single helix LHC light protein [Cyanothece sp. PCC 8802]
Length = 58
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 78 TKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLE 133
T+ PK+ED FGF E GR AM+GF +L+ E +TG+G+L+ L L
Sbjct: 9 TESPKLEDP------KFGFNDYAERLNGRAAMVGFVLTLVIEYLTGQGLLSWLGLH 58
>gi|302191598|tpg|DAA33887.1| TPA_inf: stress-enhanced protein 4 [Glaucocystis nostochinearum]
Length = 114
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 88 FGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLET 134
F + +GF+ E F GR AMIG +L+ E + GKGI+ QL +++
Sbjct: 15 FESDSFYGFSYNAERFNGRAAMIGLVLALITEYLNGKGIMGQLGIDS 61
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 195 EGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIET 240
E +GF+ + E F GR A +G+ +LI E + GKG + QL I++
Sbjct: 16 ESDSFYGFSYNAERFNGRAAMIGLVLALITEYLNGKGIMGQLGIDS 61
>gi|218439024|ref|YP_002377353.1| CAB/ELIP/HLIP-like protein [Cyanothece sp. PCC 7424]
gi|218171752|gb|ACK70485.1| CAB/ELIP/HLIP-related protein [Cyanothece sp. PCC 7424]
Length = 59
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 75 PPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLE 133
P T+ PK+E+ FGF + E GR AMIGF +L+ E +TG+ +L+ L L+
Sbjct: 7 PQPTQTPKLEEP------KFGFNEYAERLNGRAAMIGFVITLVIEYVTGQSLLSWLGLQ 59
>gi|116781259|gb|ABK22027.1| unknown [Picea sitchensis]
Length = 177
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 82 KVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
K+ED T FGFT +NE+ GR AM GFA LL E TG + Q+ +
Sbjct: 117 KIEDQASQTKV-FGFTPKNEISNGRWAMFGFAVGLLTEYATGSNFVDQMKI 166
>gi|307151098|ref|YP_003886482.1| high intensity light-inducible lhc-like protein [Cyanothece sp. PCC
7822]
gi|306981326|gb|ADN13207.1| high intensity light-inducible lhc-like protein [Cyanothece sp. PCC
7822]
Length = 47
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 28/39 (71%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGFT E + GR+AM+GF +L E +TGKGIL+QL L
Sbjct: 8 FGFTSFAENWNGRLAMLGFVIGILTELLTGKGILSQLGL 46
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 200 FGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNI 238
FGFT E + GRLA LG ++ E++TGKG L+QL +
Sbjct: 8 FGFTSFAENWNGRLAMLGFVIGILTELLTGKGILSQLGL 46
>gi|427415575|ref|ZP_18905758.1| Chlorophyll A-B binding protein [Leptolyngbya sp. PCC 7375]
gi|425758288|gb|EKU99140.1| Chlorophyll A-B binding protein [Leptolyngbya sp. PCC 7375]
Length = 54
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 80 KPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
K K+ F +GFT Q EL+ GR+AMIGF +L E ++ +G+L
Sbjct: 5 KKKISSSQFRNGWLWGFTPQAELWNGRLAMIGFVCALTIEVLSSQGVL 52
>gi|425443924|ref|ZP_18823987.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9443]
gi|389733007|emb|CCI03161.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9443]
Length = 70
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 90 TSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQL 130
+S GFTK+ E GR+AMIGF + L E +TGKGI+A +
Sbjct: 27 SSSSLGFTKKAEKLNGRLAMIGFVSLLAIEVLTGKGIIAWI 67
>gi|254416566|ref|ZP_05030317.1| hypothetical protein MC7420_5170 [Coleofasciculus chthonoplastes
PCC 7420]
gi|196176532|gb|EDX71545.1| hypothetical protein MC7420_5170 [Coleofasciculus chthonoplastes
PCC 7420]
Length = 63
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 70 SKTKAPPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQ 129
S T AP P+ + + FGF+ Q E++ GR+AM+GF +L E +G+G+L
Sbjct: 5 SNTPAPETITSPEERN-----AWKFGFSPQAEIWNGRLAMLGFIIALFVEYFSGQGVLHT 59
Query: 130 LNL 132
L +
Sbjct: 60 LGI 62
>gi|427729925|ref|YP_007076162.1| Chlorophyll A-B binding protein [Nostoc sp. PCC 7524]
gi|427365844|gb|AFY48565.1| Chlorophyll A-B binding protein [Nostoc sp. PCC 7524]
Length = 59
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 77 KTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
K P +ED + +GFT Q E++ GR+AMIGF A++L E +G+G L
Sbjct: 6 KITAPVIEDR---NAWRWGFTPQAEIWNGRLAMIGFLAAVLIELFSGQGFL 53
>gi|148241619|ref|YP_001226776.1| high light inducible protein [Synechococcus sp. RCC307]
gi|147849929|emb|CAK27423.1| High light inducible protein [Synechococcus sp. RCC307]
Length = 77
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 79 KKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
++PK+E G+GF ++ E GR+AM+GF A+L E +TG+G+L + L
Sbjct: 26 REPKME--YAAADAGWGFHERAEKLNGRLAMVGFVAALATELLTGEGLLHTIGL 77
>gi|427702282|ref|YP_007045504.1| Chlorophyll A-B binding protein [Cyanobium gracile PCC 6307]
gi|427345450|gb|AFY28163.1| Chlorophyll A-B binding protein [Cyanobium gracile PCC 6307]
Length = 96
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 24/32 (75%)
Query: 101 ELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
E GRVAMIGF A+L+GE TG+GI+ QL L
Sbjct: 58 ERLNGRVAMIGFLAALIGEAFTGRGIVGQLGL 89
>gi|218245712|ref|YP_002371083.1| CAB/ELIP/HLIP family protein [Cyanothece sp. PCC 8801]
gi|257058757|ref|YP_003136645.1| high intensity light-inducible lhc-like protein [Cyanothece sp. PCC
8802]
gi|218166190|gb|ACK64927.1| CAB/ELIP/HLIP family protein [Cyanothece sp. PCC 8801]
gi|256588923|gb|ACU99809.1| high intensity light-inducible lhc-like protein [Cyanothece sp. PCC
8802]
Length = 47
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 28/39 (71%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGFT E + GR+AM+GF +L E +TGKGIL+QL L
Sbjct: 8 FGFTSFAENWNGRLAMLGFIIGILTELMTGKGILSQLGL 46
Score = 37.4 bits (85), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 200 FGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNI 238
FGFT E + GRLA LG ++ E++TGKG L+QL +
Sbjct: 8 FGFTSFAENWNGRLAMLGFIIGILTELMTGKGILSQLGL 46
>gi|158338029|ref|YP_001519205.1| high light inducible protein [Acaryochloris marina MBIC11017]
gi|359462351|ref|ZP_09250914.1| high light inducible protein [Acaryochloris sp. CCMEE 5410]
gi|158308270|gb|ABW29887.1| high light inducible protein [Acaryochloris marina MBIC11017]
Length = 52
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 198 PIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQL 236
P++GFT E F GRLA LG + E+I+G+G LAQ+
Sbjct: 8 PMWGFTDFAENFSGRLAMLGFFLGFVTEVISGEGMLAQI 46
Score = 37.0 bits (84), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQL 130
+GFT E F GR+AM+GF + E I+G+G+LAQ+
Sbjct: 10 WGFTDFAENFSGRLAMLGFFLGFVTEVISGEGMLAQI 46
>gi|158337700|ref|YP_001518876.1| high light inducible protein [Acaryochloris marina MBIC11017]
gi|158307941|gb|ABW29558.1| high light inducible protein [Acaryochloris marina MBIC11017]
Length = 49
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 95 GFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQL 130
GF+ +E + GR+AMIGF +++ E +TGKGIL QL
Sbjct: 8 GFSAFSETWNGRLAMIGFTLAIITEALTGKGILGQL 43
>gi|359463665|ref|ZP_09252228.1| hypothetical protein ACCM5_33419 [Acaryochloris sp. CCMEE 5410]
Length = 50
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 95 GFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQL 130
GF+ +E + GR+AMIGF +L+ E +TGKGI+ QL
Sbjct: 9 GFSAFSETWNGRLAMIGFTLALITEALTGKGIIGQL 44
>gi|428307586|ref|YP_007144411.1| high light inducible protein [Crinalium epipsammum PCC 9333]
gi|428249121|gb|AFZ14901.1| high light inducible protein [Crinalium epipsammum PCC 9333]
Length = 62
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 76 PKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
PK P + D + GFT Q E++ GR+AM+GFA ++ E +G GIL
Sbjct: 5 PKVITPPIMDAADRNAWKTGFTPQAEIWNGRLAMLGFAIGIIIELTSGDGIL 56
>gi|334117894|ref|ZP_08491985.1| CAB/ELIP/HLIP-related protein [Microcoleus vaginatus FGP-2]
gi|333461003|gb|EGK89611.1| CAB/ELIP/HLIP-related protein [Microcoleus vaginatus FGP-2]
Length = 67
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 11/68 (16%)
Query: 66 ALFKSKTKAPPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKG 125
A+ + + PK ++PK FGF E GR AMIGF+ +L+ E +TG+G
Sbjct: 11 AMTQLQPTVTPKLEQPK-----------FGFNSYAERLNGRAAMIGFSLTLIIEYVTGQG 59
Query: 126 ILAQLNLE 133
+L+ L L
Sbjct: 60 LLSWLGLN 67
>gi|422302775|ref|ZP_16390134.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9806]
gi|440752193|ref|ZP_20931396.1| CAB/ELIP/HLIP family protein [Microcystis aeruginosa TAIHU98]
gi|389787931|emb|CCI16778.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9806]
gi|440176686|gb|ELP55959.1| CAB/ELIP/HLIP family protein [Microcystis aeruginosa TAIHU98]
Length = 70
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 90 TSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQL 130
+S GFTK+ E GR+AMIGF + L E +TGKGI+A +
Sbjct: 27 SSSSLGFTKKAEKLNGRLAMIGFVSLLAIELLTGKGIIAWI 67
>gi|434396857|ref|YP_007130861.1| CAB/ELIP/HLIP superfamily protein [Stanieria cyanosphaera PCC 7437]
gi|428267954|gb|AFZ33895.1| CAB/ELIP/HLIP superfamily protein [Stanieria cyanosphaera PCC 7437]
Length = 47
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 28/39 (71%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGFT E + GR+AM+GF ++ E +TGKGILAQL L
Sbjct: 8 FGFTSFAENWNGRLAMLGFIITIATELMTGKGILAQLGL 46
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 200 FGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNI 238
FGFT E + GRLA LG ++ E++TGKG LAQL +
Sbjct: 8 FGFTSFAENWNGRLAMLGFIITIATELMTGKGILAQLGL 46
>gi|427724661|ref|YP_007071938.1| high intensity light-inducible lhc-like protein [Leptolyngbya sp.
PCC 7376]
gi|427356381|gb|AFY39104.1| high intensity light-inducible lhc-like protein [Leptolyngbya sp.
PCC 7376]
Length = 47
Score = 40.8 bits (94), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 28/39 (71%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGF+ E + GR+AM+GF +L E +TGKGILAQL L
Sbjct: 8 FGFSLFAENWNGRLAMLGFVIGILTEVLTGKGILAQLGL 46
Score = 37.4 bits (85), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 200 FGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNI 238
FGF+ E + GRLA LG ++ E++TGKG LAQL +
Sbjct: 8 FGFSLFAENWNGRLAMLGFVIGILTEVLTGKGILAQLGL 46
>gi|452820594|gb|EME27634.1| hypothetical protein Gasu_47790 [Galdieria sulphuraria]
Length = 219
Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 67/169 (39%), Gaps = 39/169 (23%)
Query: 90 TSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL-----ETGIPIYEA--- 141
S G G T + E + GR AM G A +L G G + + + G + E
Sbjct: 61 VSRGLGVTSKAERWNGRHAMFGLLAIVLTGYAKGHGWIPNADQVLDMQQWGTLVMEGFNQ 120
Query: 142 -----EPLLLFFILFTLLGAIGALGDRGKFVD--------EPDEPTGLGGAVIPPGKGLR 188
++L + LL +I A F D + +EP GL +PP K
Sbjct: 121 KITNERAIVLVAHIHVLLVSIAAAIAPFSFQDRLLLRPGEKDEEPAGL----LPPFK--- 173
Query: 189 SALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLN 237
G TK EL+ GRLA LG+ F + IITG+ L +N
Sbjct: 174 -----------LGLTKEAELWNGRLAMLGVTFIVATSIITGQSILDVVN 211
>gi|332707224|ref|ZP_08427277.1| hypothetical protein LYNGBM3L_34220 [Moorea producens 3L]
gi|332353958|gb|EGJ33445.1| hypothetical protein LYNGBM3L_34220 [Moorea producens 3L]
Length = 50
Score = 40.8 bits (94), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 28/39 (71%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGFT + E GR+AMIGF A+L+ E ITG+G+L L L
Sbjct: 11 FGFTPKAENLNGRLAMIGFIAALVTEYITGQGVLHFLGL 49
>gi|427705876|ref|YP_007048253.1| high light inducible protein [Nostoc sp. PCC 7107]
gi|427358381|gb|AFY41103.1| high light inducible protein [Nostoc sp. PCC 7107]
Length = 60
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 72 TKAPPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
T K P VED + +GFT Q E++ GR+AMIGF ++ L E +G+G L
Sbjct: 2 TNTTTKITAPVVEDR---NAWRWGFTPQAEIWNGRLAMIGFLSAALIELFSGQGFL 54
>gi|113953147|ref|YP_732027.1| high light inducible protein [Synechococcus sp. CC9311]
gi|113880498|gb|ABI45456.1| possible high light inducible protein [Synechococcus sp. CC9311]
Length = 100
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 79 KKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
K+P++E G+GF + E GR+AM+GF A++ E ITG+G+L + L
Sbjct: 49 KEPRMEYAT--ADAGWGFHSRAEKLNGRLAMLGFVAAIATEMITGEGLLRTIGL 100
>gi|425437939|ref|ZP_18818351.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9432]
gi|425451888|ref|ZP_18831707.1| conserved hypothetical protein [Microcystis aeruginosa PCC 7941]
gi|443661750|ref|ZP_21132778.1| CAB/ELIP/HLIP superfamily protein [Microcystis aeruginosa
DIANCHI905]
gi|159029709|emb|CAO87787.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|389676939|emb|CCH94070.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9432]
gi|389766584|emb|CCI07833.1| conserved hypothetical protein [Microcystis aeruginosa PCC 7941]
gi|443332236|gb|ELS46855.1| CAB/ELIP/HLIP superfamily protein [Microcystis aeruginosa
DIANCHI905]
Length = 70
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 90 TSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQL 130
+S GFTK+ E GR+AMIGF + L E +TGKGI+A +
Sbjct: 27 SSSSLGFTKKAEKLNGRLAMIGFVSLLAIELLTGKGIVAWI 67
>gi|30468136|ref|NP_849023.1| ELIP-like protein [Cyanidioschyzon merolae strain 10D]
gi|30409236|dbj|BAC76185.1| ELIP-like protein (chloroplast) [Cyanidioschyzon merolae strain
10D]
Length = 43
Score = 40.4 bits (93), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
GF E+ GR+AM+GF A+LL E +TGKG+L
Sbjct: 4 LGFNNNAEMLNGRLAMLGFVAALLTEALTGKGVL 37
>gi|254416019|ref|ZP_05029775.1| hypothetical protein MC7420_8294 [Coleofasciculus chthonoplastes
PCC 7420]
gi|196177194|gb|EDX72202.1| hypothetical protein MC7420_8294 [Coleofasciculus chthonoplastes
PCC 7420]
Length = 50
Score = 40.4 bits (93), Expect = 0.82, Method: Composition-based stats.
Identities = 18/34 (52%), Positives = 26/34 (76%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
FGFT E + GR+AMIGF A+L+ E ++G+G+L
Sbjct: 11 FGFTANAENWNGRLAMIGFVAALITEYVSGQGVL 44
>gi|158334760|ref|YP_001515932.1| high light inducible protein [Acaryochloris marina MBIC11017]
gi|158305001|gb|ABW26618.1| high light inducible protein [Acaryochloris marina MBIC11017]
Length = 52
Score = 40.4 bits (93), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 25/37 (67%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQL 130
+GF E F GR+AM GF +L+ E +TGKGIL QL
Sbjct: 8 WGFNSFAETFSGRLAMWGFFVALVTEALTGKGILGQL 44
>gi|428315366|ref|YP_007113248.1| CAB/ELIP/HLIP-related protein [Oscillatoria nigro-viridis PCC 7112]
gi|428239046|gb|AFZ04832.1| CAB/ELIP/HLIP-related protein [Oscillatoria nigro-viridis PCC 7112]
Length = 67
Score = 40.4 bits (93), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 11/67 (16%)
Query: 66 ALFKSKTKAPPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKG 125
A+ + + PK ++PK FGF E GR AMIGF+ +L+ E +TG+G
Sbjct: 11 AMTQLQPTVTPKLEQPK-----------FGFNSYAERLNGRAAMIGFSLTLIIEYVTGQG 59
Query: 126 ILAQLNL 132
+L+ L L
Sbjct: 60 LLSWLGL 66
>gi|354567211|ref|ZP_08986381.1| high light inducible protein [Fischerella sp. JSC-11]
gi|353543512|gb|EHC12970.1| high light inducible protein [Fischerella sp. JSC-11]
Length = 59
Score = 40.4 bits (93), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 77 KTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
K P +ED S +GFT Q E++ GR+AMIGF A+ L E +G+G L
Sbjct: 6 KITAPVMEDR---NSWRWGFTPQAEIWNGRLAMIGFLAAALIELFSGQGFL 53
>gi|254422560|ref|ZP_05036278.1| hypothetical protein S7335_2712 [Synechococcus sp. PCC 7335]
gi|196190049|gb|EDX85013.1| hypothetical protein S7335_2712 [Synechococcus sp. PCC 7335]
Length = 52
Score = 40.4 bits (93), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
GFT+ E + GR+AMIGF +++ E TGKGIL+QL L
Sbjct: 13 LGFTEFAETWNGRLAMIGFVSAIAVEFATGKGILSQLGL 51
>gi|411120541|ref|ZP_11392913.1| Chlorophyll A-B binding protein [Oscillatoriales cyanobacterium
JSC-12]
gi|410709210|gb|EKQ66725.1| Chlorophyll A-B binding protein [Oscillatoriales cyanobacterium
JSC-12]
Length = 56
Score = 40.4 bits (93), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 11/57 (19%)
Query: 76 PKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
PK +PK FGF + E GR AMIGFA +L E +TG+G+L+ L L
Sbjct: 10 PKVSEPK-----------FGFNEYAERLNGRAAMIGFALALAIEYVTGQGLLSWLGL 55
>gi|166368684|ref|YP_001660957.1| CAB/ELIP/HLIP superfamily protein [Microcystis aeruginosa NIES-843]
gi|390440949|ref|ZP_10229138.1| CAB/ELIP/HLIP superfamily protein [Microcystis sp. T1-4]
gi|425438595|ref|ZP_18818939.1| CAB/ELIP/HLIP superfamily protein [Microcystis aeruginosa PCC 9717]
gi|425465240|ref|ZP_18844550.1| CAB/ELIP/HLIP superfamily protein [Microcystis aeruginosa PCC 9809]
gi|166091057|dbj|BAG05765.1| CAB/ELIP/HLIP superfamily protein [Microcystis aeruginosa NIES-843]
gi|389720503|emb|CCH95815.1| CAB/ELIP/HLIP superfamily protein [Microcystis aeruginosa PCC 9717]
gi|389832549|emb|CCI23725.1| CAB/ELIP/HLIP superfamily protein [Microcystis aeruginosa PCC 9809]
gi|389835719|emb|CCI33264.1| CAB/ELIP/HLIP superfamily protein [Microcystis sp. T1-4]
Length = 70
Score = 40.4 bits (93), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 90 TSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQL 130
+S GFTK E GR+AMIGF + L E +TGKGI+A +
Sbjct: 27 SSSSLGFTKNAEKLNGRLAMIGFVSLLAIELLTGKGIIAWI 67
>gi|242055463|ref|XP_002456877.1| hypothetical protein SORBIDRAFT_03g044430 [Sorghum bicolor]
gi|241928852|gb|EES01997.1| hypothetical protein SORBIDRAFT_03g044430 [Sorghum bicolor]
Length = 231
Score = 40.0 bits (92), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 92 GGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
GGFGFT +NEL G+ A+IGF + E +TGKG+L
Sbjct: 179 GGFGFTSENELINGKAAIIGFLLLIDFELLTGKGLL 214
>gi|56751279|ref|YP_171980.1| high light inducible polypeptide HliC [Synechococcus elongatus PCC
6301]
gi|81299054|ref|YP_399262.1| high light inducible polypeptide HliC [Synechococcus elongatus PCC
7942]
gi|56686238|dbj|BAD79460.1| possible high light inducible polypeptide HliC [Synechococcus
elongatus PCC 6301]
gi|81167935|gb|ABB56275.1| possible high light inducible polypeptide HliC [Synechococcus
elongatus PCC 7942]
Length = 47
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGFT E + GR+AMIGF L E +TG+GIL+Q+ L
Sbjct: 8 FGFTAFAETWNGRLAMIGFVVGLATELLTGQGILSQIGL 46
>gi|158336371|ref|YP_001517545.1| high light inducible protein [Acaryochloris marina MBIC11017]
gi|359459296|ref|ZP_09247859.1| high light inducible protein [Acaryochloris sp. CCMEE 5410]
gi|158306612|gb|ABW28229.1| high light inducible protein [Acaryochloris marina MBIC11017]
Length = 50
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 198 PIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQL 236
PI+GFT E F GRLA +G +L+ E++TG+G + Q+
Sbjct: 6 PIWGFTDFAETFGGRLAMMGFFLALVTEVLTGQGIVGQI 44
>gi|218440956|ref|YP_002379285.1| CAB/ELIP/HLIP superfamily protein [Cyanothece sp. PCC 7424]
gi|218173684|gb|ACK72417.1| CAB/ELIP/HLIP superfamily protein [Cyanothece sp. PCC 7424]
Length = 47
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGFT E + GR+AM+GF + E +TGKGILAQL L
Sbjct: 8 FGFTSFAENWNGRLAMLGFVIGIATELLTGKGILAQLGL 46
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 25/39 (64%)
Query: 200 FGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNI 238
FGFT E + GRLA LG + E++TGKG LAQL +
Sbjct: 8 FGFTSFAENWNGRLAMLGFVIGIATELLTGKGILAQLGL 46
>gi|75907633|ref|YP_321929.1| high light inducible protein [Anabaena variabilis ATCC 29413]
gi|75701358|gb|ABA21034.1| CAB/ELIP/HLIP superfamily of protein [Anabaena variabilis ATCC
29413]
Length = 59
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 77 KTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
K VED S +GFT Q E++ GR+AMIGF A++L E +G+G L
Sbjct: 6 KISASVVEDR---NSWRWGFTPQAEIWNGRLAMIGFLAAILIELFSGQGFL 53
>gi|62638123|gb|AAX92667.1| chloroplast carotene biosynthesis related protein [Dunaliella
salina]
Length = 183
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 38/136 (27%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTL 153
GF+ E+ GR+AM+GF A+L E TG+ +L QL E + + L F+LF+
Sbjct: 82 MGFSGAPEIINGRLAMLGFVAALGAELSTGESVLTQLADEPTL-------IALTFVLFS- 133
Query: 154 LGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRL 213
+++P A ++ P+ FT E+ GR
Sbjct: 134 -----------------------AASLVP-------AFARRKSDPVGPFTPQAEMTNGRA 163
Query: 214 AQLGIAFSLIGEIITG 229
A +G A L+ E + G
Sbjct: 164 AMIGFAAMLVYEGVQG 179
>gi|158337701|ref|YP_001518877.1| high light inducible protein [Acaryochloris marina MBIC11017]
gi|359458358|ref|ZP_09246921.1| high light inducible protein [Acaryochloris sp. CCMEE 5410]
gi|158307942|gb|ABW29559.1| high light inducible protein [Acaryochloris marina MBIC11017]
Length = 50
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 198 PIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQL 236
PI+GFT E F GRLA +G +L+ E++TG+G + Q+
Sbjct: 6 PIWGFTDFAETFGGRLAMMGFFLALVTEVMTGQGIVGQV 44
>gi|428218333|ref|YP_007102798.1| putative CAB/ELIP/HLIP family protein [Pseudanabaena sp. PCC 7367]
gi|427990115|gb|AFY70370.1| putative CAB/ELIP/HLIP family protein [Pseudanabaena sp. PCC 7367]
Length = 49
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 28/40 (70%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLE 133
FGF + E++ GR+AM+GF L E ITG GIL+Q+ L+
Sbjct: 10 FGFNEFAEVWNGRLAMLGFVIGLATEYITGSGILSQIGLQ 49
>gi|427417736|ref|ZP_18907919.1| Chlorophyll A-B binding protein [Leptolyngbya sp. PCC 7375]
gi|425760449|gb|EKV01302.1| Chlorophyll A-B binding protein [Leptolyngbya sp. PCC 7375]
Length = 47
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGFT+ E + GR+AM+GF L E +TG+GIL+QL L
Sbjct: 8 FGFTQLAENWNGRLAMLGFVIGLATELMTGQGILSQLGL 46
Score = 37.4 bits (85), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 193 LKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNI 238
+ E FGFT+ E + GRLA LG L E++TG+G L+QL +
Sbjct: 1 MTEENAKFGFTQLAENWNGRLAMLGFVIGLATELMTGQGILSQLGL 46
>gi|219124963|ref|XP_002182760.1| protein fucoxanthin chlorophyll a/c protein [Phaeodactylum
tricornutum CCAP 1055/1]
gi|217405554|gb|EEC45496.1| protein fucoxanthin chlorophyll a/c protein [Phaeodactylum
tricornutum CCAP 1055/1]
Length = 212
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 60/148 (40%), Gaps = 13/148 (8%)
Query: 98 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLE----TGIPIYEAEPLLLFFILFTL 153
++ EL GRVAM+ L GE + L + T IP A F++L TL
Sbjct: 67 RECELTHGRVAMLATVGFLAGEAVQNTNFLWNAQVSGPAITHIPQIPAT----FWVLLTL 122
Query: 154 LGAIGALGD-RGKFVDEPDEPTGLGGAV---IPPGK-GLRSALGLKEGGPIFGFTKSNEL 208
+ L + V D P G G + PG G + E F ++ EL
Sbjct: 123 FIGVAELSRAQTAMVPPSDIPVGKAGRMREDYNPGDIGFDPLNLMPESSEEFYRLQTKEL 182
Query: 209 FVGRLAQLGIAFSLIGEIITGKGALAQL 236
GRLA LG A L E + GKG L L
Sbjct: 183 QNGRLAMLGAAGFLAQEAVNGKGILENL 210
>gi|428769816|ref|YP_007161606.1| CAB/ELIP/HLIP family protein [Cyanobacterium aponinum PCC 10605]
gi|428684095|gb|AFZ53562.1| CAB/ELIP/HLIP-related protein [Cyanobacterium aponinum PCC 10605]
Length = 56
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 75 PPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
P TK P VED FGF E GR AMIGF +L E +G+G+L+ L L
Sbjct: 4 PEPTKTPNVEDP------KFGFNDYAEKLNGRAAMIGFIITLAIEYFSGQGLLSWLGL 55
>gi|359462896|ref|ZP_09251459.1| high intensity light-inducible lhc-like protein [Acaryochloris sp.
CCMEE 5410]
Length = 47
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 200 FGFTKSNELFVGRLAQLGIAFSLIGEIITGKG 231
FGFT+ E + GRLA LG FS+I E++TG G
Sbjct: 8 FGFTQFAETWSGRLAMLGFTFSIIAELVTGHG 39
>gi|302794153|ref|XP_002978841.1| hypothetical protein SELMODRAFT_449459 [Selaginella moellendorffii]
gi|300153650|gb|EFJ20288.1| hypothetical protein SELMODRAFT_449459 [Selaginella moellendorffii]
Length = 283
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
FGFT +NE+ GR AM+GF+ L+ E +TGKG L
Sbjct: 236 FGFTPENEITNGRAAMMGFSVLLVFELVTGKGFL 269
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 195 EGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL 233
E +FGFT NE+ GR A +G + L+ E++TGKG L
Sbjct: 231 ENKRVFGFTPENEITNGRAAMMGFSVLLVFELVTGKGFL 269
>gi|218441206|ref|YP_002379535.1| hypothetical protein PCC7424_4300 [Cyanothece sp. PCC 7424]
gi|218173934|gb|ACK72667.1| hypothetical protein PCC7424_4300 [Cyanothece sp. PCC 7424]
Length = 66
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 69 KSKTKAPPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILA 128
+S+ T++ + + G FGT FG EL+ GR+AMIGF +L+ E TG+G
Sbjct: 2 ESRQAPDYYTEQAQRKYGEFGTKFEFGSNPSAELWNGRLAMIGFLGALIIELTTGQGFFH 61
Query: 129 QLNL 132
L L
Sbjct: 62 WLGL 65
>gi|434393237|ref|YP_007128184.1| high light inducible protein [Gloeocapsa sp. PCC 7428]
gi|428265078|gb|AFZ31024.1| high light inducible protein [Gloeocapsa sp. PCC 7428]
Length = 59
Score = 40.0 bits (92), Expect = 1.2, Method: Composition-based stats.
Identities = 18/34 (52%), Positives = 26/34 (76%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
+GFT Q E++ GR+AMIGF A++L E +G+G L
Sbjct: 20 YGFTPQAEIWNGRLAMIGFLAAVLIELFSGQGFL 53
>gi|428203219|ref|YP_007081808.1| Chlorophyll A-B binding protein [Pleurocapsa sp. PCC 7327]
gi|427980651|gb|AFY78251.1| Chlorophyll A-B binding protein [Pleurocapsa sp. PCC 7327]
Length = 47
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGFT E + GR+AM+GF +L E +TG+GIL+QL L
Sbjct: 8 FGFTAFAESWNGRLAMLGFTIGVLTELLTGQGILSQLGL 46
>gi|302823744|ref|XP_002993521.1| LHC-related protein [Selaginella moellendorffii]
gi|300138652|gb|EFJ05413.1| LHC-related protein [Selaginella moellendorffii]
Length = 182
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 195 EGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNI 238
E G IFG+++ NE+ GR A GIA L+ E TG + QL I
Sbjct: 128 EEGQIFGWSRKNEVGNGRWAMFGIAVGLLTEFATGSSIVDQLRI 171
>gi|359463199|ref|ZP_09251762.1| high intensity light-inducible lhc-like protein [Acaryochloris sp.
CCMEE 5410]
Length = 47
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQL 130
FGFT+ E + GR+AM+GF S++ E +TG G+ QL
Sbjct: 8 FGFTQFAETWSGRLAMMGFTISIIAELVTGHGLYNQL 44
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 200 FGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQL 236
FGFT+ E + GRLA +G S+I E++TG G QL
Sbjct: 8 FGFTQFAETWSGRLAMMGFTISIIAELVTGHGLYNQL 44
>gi|307151720|ref|YP_003887104.1| hypothetical protein Cyan7822_1843 [Cyanothece sp. PCC 7822]
gi|306981948|gb|ADN13829.1| hypothetical protein Cyan7822_1843 [Cyanothece sp. PCC 7822]
Length = 66
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 69 KSKTKAPPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILA 128
+S+ T++ + + G FGT FG EL+ GR+AM+GF +L+ E TG+G
Sbjct: 2 ESRQSQDYYTEQSQRKYGEFGTKFEFGSNPSAELWNGRLAMLGFLGALIIELTTGQGFFH 61
Query: 129 QLNL 132
L L
Sbjct: 62 WLGL 65
>gi|302787505|ref|XP_002975522.1| LHC-related protein [Selaginella moellendorffii]
gi|300156523|gb|EFJ23151.1| LHC-related protein [Selaginella moellendorffii]
Length = 182
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 195 EGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNI 238
E G IFG+++ NE+ GR A GIA L+ E TG + QL I
Sbjct: 128 EEGRIFGWSRKNEVGNGRWAMFGIAVGLLTEFATGSSIVDQLRI 171
>gi|186681508|ref|YP_001864704.1| high light inducible protein [Nostoc punctiforme PCC 73102]
gi|186463960|gb|ACC79761.1| CAB/ELIP/HLIP superfamily [Nostoc punctiforme PCC 73102]
Length = 59
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
FGFT Q+E + GR+AMIGF +++L E +G+G+L
Sbjct: 20 FGFTPQSENWNGRLAMIGFLSAILIEAFSGQGLL 53
>gi|440684521|ref|YP_007159316.1| CAB/ELIP/HLIP-related protein [Anabaena cylindrica PCC 7122]
gi|428681640|gb|AFZ60406.1| CAB/ELIP/HLIP-related protein [Anabaena cylindrica PCC 7122]
Length = 56
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 75 PPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLE 133
P + PK+ED FGF + +E GR AMIGF +L E +T +G+L+ L L+
Sbjct: 4 PQPSVNPKLEDP------KFGFNEYSERLNGRAAMIGFILMVLIEYLTNQGVLSWLGLK 56
>gi|354568612|ref|ZP_08987775.1| high light inducible protein [Fischerella sp. JSC-11]
gi|353539866|gb|EHC09346.1| high light inducible protein [Fischerella sp. JSC-11]
Length = 60
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 91 SGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
S +GFT Q EL+ GR+AMIGF +++L E +G+G L
Sbjct: 18 SWLWGFTPQTELWNGRLAMIGFISAVLIEMFSGQGFL 54
>gi|428220853|ref|YP_007105023.1| Chlorophyll A-B binding protein [Synechococcus sp. PCC 7502]
gi|427994193|gb|AFY72888.1| Chlorophyll A-B binding protein [Synechococcus sp. PCC 7502]
Length = 72
Score = 39.7 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
FGFT E + GR+AMIGF A++ E ITG+G+L
Sbjct: 33 FGFTNGAENWNGRLAMIGFVAAIAVELITGQGVL 66
>gi|359458357|ref|ZP_09246920.1| high light inducible protein [Acaryochloris sp. CCMEE 5410]
Length = 49
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 95 GFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQL 130
GF+ +E + GR+AMIGF +++ E +TG+GIL QL
Sbjct: 8 GFSAFSETWNGRLAMIGFTLAIITEALTGQGILGQL 43
>gi|443314761|ref|ZP_21044295.1| Chlorophyll A-B binding protein [Leptolyngbya sp. PCC 6406]
gi|442785638|gb|ELR95444.1| Chlorophyll A-B binding protein [Leptolyngbya sp. PCC 6406]
Length = 47
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGFT+ E + GR+AM+GF L E +TG+GIL+QL L
Sbjct: 8 FGFTQFAENWNGRLAMLGFTIGLATELLTGQGILSQLGL 46
Score = 37.0 bits (84), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 200 FGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNI 238
FGFT+ E + GRLA LG L E++TG+G L+QL +
Sbjct: 8 FGFTQFAENWNGRLAMLGFTIGLATELLTGQGILSQLGL 46
>gi|428203575|ref|YP_007082164.1| Chlorophyll A-B binding protein [Pleurocapsa sp. PCC 7327]
gi|427981007|gb|AFY78607.1| Chlorophyll A-B binding protein [Pleurocapsa sp. PCC 7327]
Length = 50
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 27/34 (79%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
FGFT E + GR+AMIGFAA+L+ E ++GKG+L
Sbjct: 11 FGFTPGAENWNGRLAMIGFAAALIIELVSGKGVL 44
>gi|414878920|tpg|DAA56051.1| TPA: hypothetical protein ZEAMMB73_342569 [Zea mays]
Length = 370
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 92 GGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
GGFGFT NEL G+ A+IGF + E +TGKG+L
Sbjct: 318 GGFGFTSDNELINGKAAIIGFLLLIDFELLTGKGLL 353
>gi|158333415|ref|YP_001514587.1| high light inducible protein [Acaryochloris marina MBIC11017]
gi|359460387|ref|ZP_09248950.1| high light inducible protein [Acaryochloris sp. CCMEE 5410]
gi|158303656|gb|ABW25273.1| high light inducible protein [Acaryochloris marina MBIC11017]
Length = 54
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGF + E F GR AMI F A+L+ E +TG+GI + L L
Sbjct: 15 FGFNEFAERFGGRAAMIAFIAALVFEAVTGQGIFSYLGL 53
>gi|115484891|ref|NP_001067589.1| Os11g0242400 [Oryza sativa Japonica Group]
gi|62733863|gb|AAX95972.1| Rieske [2Fe-2S] domain, putative [Oryza sativa Japonica Group]
gi|62733864|gb|AAX95973.1| Rieske [2Fe-2S] domain, putative [Oryza sativa Japonica Group]
gi|62733865|gb|AAX95974.1| Rieske [2Fe-2S] domain, putative [Oryza sativa Japonica Group]
gi|77549535|gb|ABA92332.1| Rieske domain containing protein, expressed [Oryza sativa Japonica
Group]
gi|77549536|gb|ABA92333.1| Rieske domain containing protein, expressed [Oryza sativa Japonica
Group]
gi|77549537|gb|ABA92334.1| Rieske domain containing protein, expressed [Oryza sativa Japonica
Group]
gi|113644811|dbj|BAF27952.1| Os11g0242400 [Oryza sativa Japonica Group]
gi|125533933|gb|EAY80481.1| hypothetical protein OsI_35659 [Oryza sativa Indica Group]
gi|125576731|gb|EAZ17953.1| hypothetical protein OsJ_33497 [Oryza sativa Japonica Group]
gi|215695042|dbj|BAG90233.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 277
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 92 GGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
GGFGFT +NEL G+ A+IGF + E +TGKG+L
Sbjct: 224 GGFGFTNKNELINGKAAIIGFLLLIDFELLTGKGLL 259
>gi|302787777|ref|XP_002975658.1| hypothetical protein SELMODRAFT_449457 [Selaginella moellendorffii]
gi|300156659|gb|EFJ23287.1| hypothetical protein SELMODRAFT_449457 [Selaginella moellendorffii]
Length = 283
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
FGFT +NE+ GR AM+GF+ L+ E +TGKG L
Sbjct: 236 FGFTPENEITNGRAAMMGFSLLLVFELVTGKGFL 269
Score = 37.7 bits (86), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 195 EGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL 233
E +FGFT NE+ GR A +G + L+ E++TGKG L
Sbjct: 231 ENKRVFGFTPENEITNGRAAMMGFSLLLVFELVTGKGFL 269
>gi|220908116|ref|YP_002483427.1| CAB/ELIP/HLIP-like protein [Cyanothece sp. PCC 7425]
gi|219864727|gb|ACL45066.1| CAB/ELIP/HLIP-related protein [Cyanothece sp. PCC 7425]
Length = 54
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 25/39 (64%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGF E GR AMIGF +LL E +TG+GIL+ L L
Sbjct: 15 FGFNSFAERLNGRAAMIGFTLALLIEYVTGQGILSWLGL 53
>gi|427734592|ref|YP_007054136.1| Chlorophyll A-B binding protein [Rivularia sp. PCC 7116]
gi|427369633|gb|AFY53589.1| Chlorophyll A-B binding protein [Rivularia sp. PCC 7116]
Length = 59
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 77 KTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
KT VED + +GFT Q E++ GR+AMIGF A+ L E +G+G L
Sbjct: 6 KTAIANVEDR---NAWRWGFTPQAEIWNGRLAMIGFLAAALIELFSGEGFL 53
>gi|427418161|ref|ZP_18908344.1| Chlorophyll A-B binding protein [Leptolyngbya sp. PCC 7375]
gi|425760874|gb|EKV01727.1| Chlorophyll A-B binding protein [Leptolyngbya sp. PCC 7375]
Length = 47
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
+GFT+ E + GR+AM+GF ++ E +TGK IL+QL +
Sbjct: 8 YGFTRIAERWNGRLAMLGFTIGIMTELLTGKSILSQLGI 46
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 193 LKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNI 238
++ G +GFT+ E + GRLA LG ++ E++TGK L+QL I
Sbjct: 1 MENQGAKYGFTRIAERWNGRLAMLGFTIGIMTELLTGKSILSQLGI 46
>gi|119490866|ref|ZP_01623149.1| possible high light inducible polypeptide HliC [Lyngbya sp. PCC
8106]
gi|119453684|gb|EAW34843.1| possible high light inducible polypeptide HliC [Lyngbya sp. PCC
8106]
Length = 71
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGFT+ E + GR+AM+GF L E +TG+GIL+Q+ +
Sbjct: 32 FGFTEFAETWNGRLAMLGFVIGLATEYLTGQGILSQIGI 70
Score = 37.7 bits (86), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 188 RSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNI 238
+ +L ++ FGFT+ E + GRLA LG L E +TG+G L+Q+ I
Sbjct: 20 KESLDMENQETKFGFTEFAETWNGRLAMLGFVIGLATEYLTGQGILSQIGI 70
>gi|186684118|ref|YP_001867314.1| CAB/ELIP/HLIP family protein [Nostoc punctiforme PCC 73102]
gi|186466570|gb|ACC82371.1| CAB/ELIP/HLIP-related protein [Nostoc punctiforme PCC 73102]
Length = 56
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 11/58 (18%)
Query: 76 PKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLE 133
PK ++PK FGF + E GR AMIGFA L+ E +T +G+L+ L L+
Sbjct: 10 PKLEEPK-----------FGFNEYAERLNGRAAMIGFALMLVIEYVTNQGVLSWLGLK 56
>gi|317969338|ref|ZP_07970728.1| putative high light inducible protein [Synechococcus sp. CB0205]
Length = 78
Score = 39.3 bits (90), Expect = 2.1, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 98 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEA 141
KQ E F GR+AM+G ++ EG+TG+GI Q+ L I Y A
Sbjct: 25 KQVERFNGRMAMLGIVIGIITEGLTGQGIAHQIGLGPLIDGYAA 68
>gi|226495849|ref|NP_001151666.1| rieske domain containing protein [Zea mays]
gi|195648532|gb|ACG43734.1| rieske domain containing protein [Zea mays]
Length = 276
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 92 GGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
GGFGFT NEL G+ A+IGF + E +TGKG+L
Sbjct: 224 GGFGFTSDNELINGKAAIIGFLLLIDFELLTGKGLL 259
>gi|194696446|gb|ACF82307.1| unknown [Zea mays]
Length = 276
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 92 GGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
GGFGFT NEL G+ A+IGF + E +TGKG+L
Sbjct: 224 GGFGFTSDNELINGKAAIIGFLLLIDFELLTGKGLL 259
>gi|226494987|ref|NP_001152077.1| LOC100285714 [Zea mays]
gi|195652379|gb|ACG45657.1| OHP2 [Zea mays]
Length = 185
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGF +NE+ GR AM GFA +L E TG + QL +
Sbjct: 136 FGFVPKNEISNGRWAMFGFAVGMLTEYATGSDFVQQLKI 174
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%)
Query: 188 RSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNI 238
+ L + GP FGF NE+ GR A G A ++ E TG + QL I
Sbjct: 124 KKKLDEADQGPFFGFVPKNEISNGRWAMFGFAVGMLTEYATGSDFVQQLKI 174
>gi|413950479|gb|AFW83128.1| OHP2 [Zea mays]
Length = 185
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGF +NE+ GR AM GFA +L E TG + QL +
Sbjct: 136 FGFVPKNEISNGRWAMFGFAVGMLTEYATGSDFVQQLKI 174
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%)
Query: 188 RSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNI 238
+ L + GP FGF NE+ GR A G A ++ E TG + QL I
Sbjct: 124 KKKLDEADQGPFFGFVPKNEISNGRWAMFGFAVGMLTEYATGSDFVQQLKI 174
>gi|428207710|ref|YP_007092063.1| CAB/ELIP/HLIP-like protein [Chroococcidiopsis thermalis PCC 7203]
gi|428009631|gb|AFY88194.1| CAB/ELIP/HLIP-like protein [Chroococcidiopsis thermalis PCC 7203]
Length = 57
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 72 TKAPPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLN 131
T P T P++E+ FGF + E GR AMIGF + E +TG G+LA L
Sbjct: 2 TAQPQPTTTPRLEEP------KFGFNEYAERLNGRAAMIGFLLMVAIEVVTGHGVLAWLG 55
Query: 132 LE 133
L+
Sbjct: 56 LK 57
>gi|443325402|ref|ZP_21054099.1| Chlorophyll A-B binding protein [Xenococcus sp. PCC 7305]
gi|442794999|gb|ELS04389.1| Chlorophyll A-B binding protein [Xenococcus sp. PCC 7305]
Length = 47
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGFT+ E + GR+AM+GF L E +TG GIL+QL L
Sbjct: 8 FGFTQFAENWNGRLAMLGFTIGLATELMTGHGILSQLGL 46
>gi|16329801|ref|NP_440529.1| high light-inducible protein [Synechocystis sp. PCC 6803]
gi|383321543|ref|YP_005382396.1| high light-inducible protein [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383324713|ref|YP_005385566.1| high light-inducible protein [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383490597|ref|YP_005408273.1| high light-inducible protein [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384435863|ref|YP_005650587.1| high light-inducible protein [Synechocystis sp. PCC 6803]
gi|451813961|ref|YP_007450413.1| high light-inducible protein [Synechocystis sp. PCC 6803]
gi|1652286|dbj|BAA17209.1| high light-inducible protein [Synechocystis sp. PCC 6803]
gi|339272895|dbj|BAK49382.1| high light-inducible protein [Synechocystis sp. PCC 6803]
gi|359270862|dbj|BAL28381.1| high light-inducible protein [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274033|dbj|BAL31551.1| high light-inducible protein [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277203|dbj|BAL34720.1| high light-inducible protein [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407957688|dbj|BAM50928.1| high light-inducible protein [Bacillus subtilis BEST7613]
gi|451779930|gb|AGF50899.1| high light-inducible protein [Synechocystis sp. PCC 6803]
Length = 70
Score = 38.9 bits (89), Expect = 2.3, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 95 GFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLN 131
G+TK E GR AMIGFA+ L+ E +TG G++ LN
Sbjct: 32 GWTKYAEKMNGRFAMIGFASLLIMEVVTGHGVIGWLN 68
>gi|157965841|gb|ABW06957.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 562
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 57/146 (39%), Gaps = 24/146 (16%)
Query: 98 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAI 157
K E+ GR+AM+G +TG+G LA L P + LL +
Sbjct: 302 KLKEIKNGRLAMVGMFGFWAQSYVTGEGPLANLAAHLADPAHN-----------NLLNTV 350
Query: 158 GALGDRGKFVDEPDEPTGLGGAVIP-------PGKGLRSALGLKEGGPIFGFTKSNELFV 210
G+ PT GA P PG LGL + F + +E++
Sbjct: 351 AMFAASGE-----KRPTWFPGAEAPAWLTGEYPGDRGFDPLGLAKDPEDFAKNRDSEVYH 405
Query: 211 GRLAQLGIAFSLIGEIITGKGALAQL 236
GR A LG+ L+ E+ G +AQL
Sbjct: 406 GRWAMLGLVGCLVPEVF-GNLGIAQL 430
Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 58/140 (41%), Gaps = 12/140 (8%)
Query: 98 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAI 157
K E+ GR+AM+G +TG+G LA L P + L +
Sbjct: 93 KLKEIKNGRLAMVGMFGFWAQSYVTGEGPLANLAAHLADPAHNN--------LLNTVAMF 144
Query: 158 GALGD-RGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQL 216
A G+ R + + PT L G PG GL + F + +E+F GR A L
Sbjct: 145 AASGEKRPTWFPGAEAPTWLTGEY--PGDRGFDPFGLAKDPADFAKFRDSEVFHGRWAML 202
Query: 217 GIAFSLIGEIITGKGALAQL 236
G+ L+ E+ G +AQL
Sbjct: 203 GLVGCLVPEVF-GNLGIAQL 221
>gi|434405381|ref|YP_007148266.1| Chlorophyll A-B binding protein [Cylindrospermum stagnale PCC 7417]
gi|428259636|gb|AFZ25586.1| Chlorophyll A-B binding protein [Cylindrospermum stagnale PCC 7417]
Length = 61
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 78 TKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
T P ED + +GFT Q E++ GR+AMIGF A+ L E +G+G L
Sbjct: 9 TNTPVAEDR---NAWRWGFTPQAEIWNGRLAMIGFLAAALIELASGQGFL 55
>gi|427718032|ref|YP_007066026.1| high light inducible protein [Calothrix sp. PCC 7507]
gi|427350468|gb|AFY33192.1| high light inducible protein [Calothrix sp. PCC 7507]
Length = 59
Score = 38.9 bits (89), Expect = 2.4, Method: Composition-based stats.
Identities = 18/34 (52%), Positives = 26/34 (76%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
+GFT Q E++ GR+AMIGF A+ L E ++G+G L
Sbjct: 20 WGFTPQAEVWNGRLAMIGFLAAALVEVLSGQGFL 53
>gi|326489352|dbj|BAK01659.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326500040|dbj|BAJ90855.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 276
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 4/45 (8%)
Query: 83 VEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
V++G+ GGFGFT NEL G+ A+IGF + E +TGKG+L
Sbjct: 218 VDEGV----GGFGFTAYNELVNGKAAIIGFLLLIDFELLTGKGLL 258
>gi|67926003|ref|ZP_00519269.1| CAB/ELIP/HLIP superfamily [Crocosphaera watsonii WH 8501]
gi|416411168|ref|ZP_11688706.1| CAB/ELIP/HLIP superfamily [Crocosphaera watsonii WH 0003]
gi|67852148|gb|EAM47641.1| CAB/ELIP/HLIP superfamily [Crocosphaera watsonii WH 8501]
gi|357260342|gb|EHJ09774.1| CAB/ELIP/HLIP superfamily [Crocosphaera watsonii WH 0003]
Length = 50
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 90 TSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
G FGFT E + GR+AMIGF ++L+ E +TG+G+L
Sbjct: 7 NEGKFGFTGYAENWNGRLAMIGFVSALIVELVTGQGVL 44
>gi|17232754|ref|NP_489302.1| high light inducible protein [Nostoc sp. PCC 7120]
gi|551683|gb|AAA22044.1| ORF2 [Nostoc sp. PCC 7120]
gi|17134401|dbj|BAB76961.1| CAB/ELIP/HLIP superfamily of protein [Nostoc sp. PCC 7120]
Length = 59
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 77 KTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
K VED S +GFT Q E++ GR+AMIGF A+ L E +G+G L
Sbjct: 6 KISASVVEDR---NSWRWGFTPQAEIWNGRLAMIGFLAATLIELFSGQGFL 53
>gi|88809622|ref|ZP_01125129.1| putative high light inducible protein [Synechococcus sp. WH 7805]
gi|88786372|gb|EAR17532.1| putative high light inducible protein [Synechococcus sp. WH 7805]
Length = 87
Score = 38.9 bits (89), Expect = 2.8, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 101 ELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEA 141
E F GR AM+GF ++ EG+TG+GIL Q+ L + Y A
Sbjct: 37 ERFNGRAAMLGFVIGVITEGLTGQGILHQIGLGPLVDGYAA 77
>gi|72383295|ref|YP_292650.1| high light inducible protein [Prochlorococcus marinus str. NATL2A]
gi|124024874|ref|YP_001013990.1| high light inducible protein [Prochlorococcus marinus str. NATL1A]
gi|72003145|gb|AAZ58947.1| possible high light inducible protein [Prochlorococcus marinus str.
NATL2A]
gi|123959942|gb|ABM74725.1| possible high light inducible protein [Prochlorococcus marinus str.
NATL1A]
Length = 48
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 198 PIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNI 238
P +GF E++ GRLA +GI L E++TG+G L Q+ I
Sbjct: 7 PRYGFVNFAEIWNGRLAMMGILIGLTTELLTGQGILTQMGI 47
>gi|33239562|ref|NP_874504.1| high light inducible protein hli4 [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33237087|gb|AAP99156.1| High light inducible protein hli4 [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 49
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 198 PIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQL 236
P +GF E++ GRLA LGI L E++TG+G L Q+
Sbjct: 8 PRYGFVNYAEIWNGRLAMLGIVIGLSTELLTGQGILGQI 46
>gi|428211488|ref|YP_007084632.1| Chlorophyll A-B binding protein [Oscillatoria acuminata PCC 6304]
gi|427999869|gb|AFY80712.1| Chlorophyll A-B binding protein [Oscillatoria acuminata PCC 6304]
Length = 47
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 90 TSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
T FGFT+ E + GR+AM+GF + E +TG GIL+Q+ L
Sbjct: 4 TKAKFGFTEFAETWNGRLAMLGFVIGVATELLTGHGILSQIGL 46
>gi|427717467|ref|YP_007065461.1| hypothetical protein Cal7507_2188 [Calothrix sp. PCC 7507]
gi|427349903|gb|AFY32627.1| hypothetical protein Cal7507_2188 [Calothrix sp. PCC 7507]
Length = 109
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 75 PPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLE 133
P T PK+E+ FGF + E GR AMIGF +L E +T +G+++ L L+
Sbjct: 57 PKPTNTPKLEEP------KFGFNEYAERLNGRAAMIGFILMVLIEYVTNQGVISWLGLK 109
>gi|219115808|ref|XP_002178699.1| protein fucoxanthin chlorophyll a/c protein [Phaeodactylum
tricornutum CCAP 1055/1]
gi|217409466|gb|EEC49397.1| protein fucoxanthin chlorophyll a/c protein [Phaeodactylum
tricornutum CCAP 1055/1]
Length = 210
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 65/147 (44%), Gaps = 11/147 (7%)
Query: 98 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAI 157
++ EL GRVAM+ L+GE + G L +++ + A+ F++L T+ I
Sbjct: 66 REAELTHGRVAMLATVGFLVGEAVEGSSFLFDASIKGPAISHLAQVPTPFWVLLTIF--I 123
Query: 158 GA-------LGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLK-EGGPIFGFTKSNELF 209
GA +G R D P + GL PG LGLK ++ EL
Sbjct: 124 GAAEQTRAVIGWRDP-SDVPFDKPGLLNEDYTPGDIGFDPLGLKPTDAEELRVLQTKELQ 182
Query: 210 VGRLAQLGIAFSLIGEIITGKGALAQL 236
GRLA L A + E++ GKG L L
Sbjct: 183 NGRLAMLAAAGFMAQELVDGKGILEHL 209
>gi|318040569|ref|ZP_07972525.1| Lhc-like protein Lhl4 [Synechococcus sp. CB0101]
Length = 50
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 90 TSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
TS FGF E + GR+AM+GF L E +TG+GIL Q+ L
Sbjct: 7 TSARFGFVNFAETWNGRLAMLGFTIGLATELLTGQGILGQIGL 49
>gi|172038257|ref|YP_001804758.1| putative CAB/ELIP/HLIP family protein [Cyanothece sp. ATCC 51142]
gi|354554392|ref|ZP_08973697.1| Chlorophyll A-B binding protein [Cyanothece sp. ATCC 51472]
gi|171699711|gb|ACB52692.1| putative CAB/ELIP/HLIP family protein [Cyanothece sp. ATCC 51142]
gi|353554071|gb|EHC23462.1| Chlorophyll A-B binding protein [Cyanothece sp. ATCC 51472]
Length = 47
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGFT E + GR+AM+GF + E +TG+GIL+QL L
Sbjct: 8 FGFTTFAENWNGRLAMLGFVIGIATEYLTGQGILSQLGL 46
>gi|158340909|ref|YP_001522077.1| hypothetical protein AM1_D0272 [Acaryochloris marina MBIC11017]
gi|158311150|gb|ABW32763.1| conserved domain protein [Acaryochloris marina MBIC11017]
Length = 50
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 27/36 (75%)
Query: 95 GFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQL 130
GF+ +E + GR+AMIGF +L+ E +TG+GI+ Q+
Sbjct: 9 GFSAFSETWNGRLAMIGFTLALITEALTGEGIIGQI 44
>gi|443313415|ref|ZP_21043026.1| Chlorophyll A-B binding protein [Synechocystis sp. PCC 7509]
gi|442776358|gb|ELR86640.1| Chlorophyll A-B binding protein [Synechocystis sp. PCC 7509]
Length = 68
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 11/58 (18%)
Query: 76 PKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLE 133
PK ++PK FGF + E GR AMIGF+ ++ E +T +G+LA L L+
Sbjct: 22 PKLQQPK-----------FGFNEYAERLNGRAAMIGFSIMVIIEYVTNQGMLAWLGLK 68
>gi|359462895|ref|ZP_09251458.1| CAB/ELIP/HLIP superfamily protein [Acaryochloris sp. CCMEE 5410]
Length = 85
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 83 VEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQL 130
VE + +GF + E F GRVAMIGF +L E +TGKGI+ +
Sbjct: 36 VEPEPYAAEPKWGFNQFAETFSGRVAMIGFDLLVLTELVTGKGIIHTI 83
>gi|359463360|ref|ZP_09251923.1| high intensity light-inducible lhc-like protein [Acaryochloris sp.
CCMEE 5410]
Length = 47
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQL 130
FGFT+ E + GR+AM+GF S++ E ITG G+ L
Sbjct: 8 FGFTQFAETWSGRLAMMGFTLSIIAELITGHGLYNHL 44
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 200 FGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQL 236
FGFT+ E + GRLA +G S+I E+ITG G L
Sbjct: 8 FGFTQFAETWSGRLAMMGFTLSIIAELITGHGLYNHL 44
>gi|126656545|ref|ZP_01727806.1| CAB/ELIP/HLIP family protein [Cyanothece sp. CCY0110]
gi|172037129|ref|YP_001803630.1| putative CAB/ELIP/HLIP family protein [Cyanothece sp. ATCC 51142]
gi|354555893|ref|ZP_08975192.1| putative CAB/ELIP/HLIP family protein [Cyanothece sp. ATCC 51472]
gi|126622231|gb|EAZ92938.1| CAB/ELIP/HLIP family protein [Cyanothece sp. CCY0110]
gi|171698583|gb|ACB51564.1| putative CAB/ELIP/HLIP family protein [Cyanothece sp. ATCC 51142]
gi|353552217|gb|EHC21614.1| putative CAB/ELIP/HLIP family protein [Cyanothece sp. ATCC 51472]
Length = 47
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
GFT+ E + GR+AM+GF ++ E +TG+GIL+Q+ L
Sbjct: 8 LGFTEFAEAWNGRLAMLGFVIGVITEYVTGQGILSQIGL 46
>gi|354564843|ref|ZP_08984019.1| CAB/ELIP/HLIP-related protein [Fischerella sp. JSC-11]
gi|353549969|gb|EHC19408.1| CAB/ELIP/HLIP-related protein [Fischerella sp. JSC-11]
Length = 57
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 11/65 (16%)
Query: 69 KSKTKAPPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILA 128
+S+ PK ++PK FGF + E GR AMIGF +L E T KG+L+
Sbjct: 4 QSQPSVTPKLEEPK-----------FGFNEYAERLNGRAAMIGFILMVLIEYFTDKGVLS 52
Query: 129 QLNLE 133
L L+
Sbjct: 53 WLGLK 57
>gi|428223346|ref|YP_007107516.1| Chlorophyll A-B binding protein [Synechococcus sp. PCC 7502]
gi|427996686|gb|AFY75381.1| Chlorophyll A-B binding protein [Synechococcus sp. PCC 7502]
Length = 54
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 24/43 (55%)
Query: 90 TSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
T FGF E GR AMIGF L+ E TGKG+LA L L
Sbjct: 11 TDPSFGFNSYAERLNGRAAMIGFLTVLVIEFATGKGVLAWLGL 53
>gi|172036458|ref|YP_001802959.1| putative CAB/ELIP/HLIP superfamily protein [Cyanothece sp. ATCC
51142]
gi|354553241|ref|ZP_08972548.1| Chlorophyll A-B binding protein [Cyanothece sp. ATCC 51472]
gi|171697912|gb|ACB50893.1| putative CAB/ELIP/HLIP superfamily protein [Cyanothece sp. ATCC
51142]
gi|353555071|gb|EHC24460.1| Chlorophyll A-B binding protein [Cyanothece sp. ATCC 51472]
Length = 50
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 90 TSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
G FGFT E + GR+AMIGF ++L+ E +TG+G+L
Sbjct: 7 NEGKFGFTGYAENWNGRLAMIGFISALIVELVTGQGVL 44
>gi|357158365|ref|XP_003578105.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 246
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 73/203 (35%), Gaps = 37/203 (18%)
Query: 69 KSKTKAPPKTKKPKVEDGIFGTSGGFG------------FTKQNELFVGRVAMIGFAASL 116
++K + P P DG GF + Q EL GR AM+G A L
Sbjct: 46 QAKGQWLPGLASPAYLDGSLAGDNGFDPLALAEDPADLRWFVQAELVNGRWAMLGVAGML 105
Query: 117 LGEGITGKGIL-AQLNLETGIPIYEAEPLLLFFILFTLLGAI-----------GALGDRG 164
+ E +T G+L A + G Y A LF + F L + G++
Sbjct: 106 IPELLTKAGLLSAPEWYDAGKETYFASSSTLFVVEFILFHYVEIRRWQDIKNPGSVNQDP 165
Query: 165 KFVDE--PDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSL 222
F PD G G+V P L A L+ K EL GRLA L L
Sbjct: 166 IFKSYSLPDHDCGYPGSVFNP---LNFAPTLE--------NKEKELANGRLAMLAFLGFL 214
Query: 223 IGEIITGKGALAQLNIETGIPIN 245
+ +TGKG L P +
Sbjct: 215 VQHNVTGKGPFENLMQHLADPWH 237
>gi|22299751|ref|NP_682998.1| CAB/ELIP/HLIP superfamily protein [Thermosynechococcus elongatus
BP-1]
gi|22295935|dbj|BAC09760.1| CAB/ELIP/HLIP superfamily protein [Thermosynechococcus elongatus
BP-1]
Length = 69
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 25/37 (67%)
Query: 95 GFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLN 131
GFT ELF GR+AMIGF + L E ITG G++ LN
Sbjct: 31 GFTPYAELFNGRLAMIGFISLLALEVITGHGLIGFLN 67
>gi|67922854|ref|ZP_00516352.1| CAB/ELIP/HLIP-related protein [Crocosphaera watsonii WH 8501]
gi|67855278|gb|EAM50539.1| CAB/ELIP/HLIP-related protein [Crocosphaera watsonii WH 8501]
Length = 58
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 78 TKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLE 133
T+ PK+ED FGF E GR AM+GF L E TG+G+L+ L L+
Sbjct: 9 TETPKLEDP------KFGFNDYAERLNGRAAMVGFLLVLAIEYFTGQGLLSWLGLQ 58
>gi|148242624|ref|YP_001227781.1| high light inducible protein [Synechococcus sp. RCC307]
gi|147850934|emb|CAK28428.1| High light inducible protein [Synechococcus sp. RCC307]
Length = 73
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 24/30 (80%)
Query: 101 ELFVGRVAMIGFAASLLGEGITGKGILAQL 130
E GRVAM+GF+A+++GE I+G+GI QL
Sbjct: 33 ERLNGRVAMVGFSAAVVGEWISGEGITGQL 62
>gi|119512307|ref|ZP_01631393.1| CAB/ELIP/HLIP superfamily protein [Nodularia spumigena CCY9414]
gi|119463020|gb|EAW43971.1| CAB/ELIP/HLIP superfamily protein [Nodularia spumigena CCY9414]
Length = 59
Score = 38.1 bits (87), Expect = 4.1, Method: Composition-based stats.
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
+GFT Q E++ GR+AMIGF A+ L E +G+G L
Sbjct: 20 WGFTPQAEIWNGRLAMIGFLAAALIELFSGQGFL 53
>gi|126660148|ref|ZP_01731267.1| CAB/ELIP/HLIP superfamily protein [Cyanothece sp. CCY0110]
gi|126618591|gb|EAZ89341.1| CAB/ELIP/HLIP superfamily protein [Cyanothece sp. CCY0110]
Length = 50
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 90 TSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
G FGFT E + GR+AMIGF ++L+ E +TG+G+L
Sbjct: 7 NEGKFGFTGYAENWNGRLAMIGFLSALIVELVTGQGVL 44
>gi|42562501|ref|NP_564432.3| one-helix protein 2 [Arabidopsis thaliana]
gi|10086479|gb|AAG12539.1|AC015446_20 Unknown protein [Arabidopsis thaliana]
gi|10092446|gb|AAG12849.1|AC079286_6 photosystem II 22 kDa protein, putative; 13290-12539 [Arabidopsis
thaliana]
gi|14190393|gb|AAK55677.1|AF378874_1 At1g34000/F12G12_210 [Arabidopsis thaliana]
gi|15028349|gb|AAK76651.1| unknown protein [Arabidopsis thaliana]
gi|15215883|gb|AAK91485.1| At1g34000/F12G12_210 [Arabidopsis thaliana]
gi|20259283|gb|AAM14377.1| putative photosystem II 22 kDa protein [Arabidopsis thaliana]
gi|23379334|gb|AAL25838.1| one-helix protein [Arabidopsis thaliana]
gi|332193535|gb|AEE31656.1| one-helix protein 2 [Arabidopsis thaliana]
Length = 172
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 54 AASSSSKAFSTVALFKSKTKAPPKT-KKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGF 112
A + K+ +TV + K K + K+ K+E G FGF +NE+ GR AM GF
Sbjct: 84 AVAVDGKSVTTVEFQRQKAKELQEYFKQKKLEAA--GQGPFFGFQPKNEISNGRWAMFGF 141
Query: 113 AASLLGEGITGKGILAQLNL 132
A +L E TG ++ Q+ +
Sbjct: 142 AVGMLTEYATGSDLVDQVKI 161
>gi|434393178|ref|YP_007128125.1| high light inducible protein [Gloeocapsa sp. PCC 7428]
gi|428265019|gb|AFZ30965.1| high light inducible protein [Gloeocapsa sp. PCC 7428]
Length = 58
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
+GFT Q E++ GR+AMIGF +++L E +G+G L L
Sbjct: 19 WGFTPQTEIWNGRLAMIGFLSAVLIEVFSGQGFLHYWGL 57
>gi|113954925|ref|YP_731425.1| Lhc-like protein Lhl4 [Synechococcus sp. CC9311]
gi|113882276|gb|ABI47234.1| Lhc-like protein Lhl4 [Synechococcus sp. CC9311]
Length = 47
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 90 TSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
T+ FGF + E + GR+AMIGF L E +TG+GIL+Q+ L
Sbjct: 5 TASRFGFVEFAETWNGRLAMIGFVIGLGTELLTGQGILSQIGL 47
>gi|172035518|ref|YP_001802019.1| CAB/ELIP/HLIP family protein [Cyanothece sp. ATCC 51142]
gi|171696972|gb|ACB49953.1| probable CAB/ELIP/HLIP family protein [Cyanothece sp. ATCC 51142]
Length = 91
Score = 38.1 bits (87), Expect = 4.3, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQL 130
FGF K E GR+AMIGF + L E +TG+G++ L
Sbjct: 52 FGFNKYAEKLNGRLAMIGFISLLAFESLTGQGLVTWL 88
>gi|300868809|ref|ZP_07113416.1| CAB/ELIP/HLIP-related protein [Oscillatoria sp. PCC 6506]
gi|300333160|emb|CBN58608.1| CAB/ELIP/HLIP-related protein [Oscillatoria sp. PCC 6506]
Length = 56
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 11/57 (19%)
Query: 76 PKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
PK ++PK FGF E GR AM+GF +L+ E TG+G+L+ L L
Sbjct: 10 PKLEQPK-----------FGFNDYAERLNGRAAMVGFTLTLIIEYFTGQGLLSWLGL 55
>gi|226508068|ref|NP_001148859.1| LOC100282478 [Zea mays]
gi|195622672|gb|ACG33166.1| OHP2 [Zea mays]
gi|414881620|tpg|DAA58751.1| TPA: OHP2 [Zea mays]
Length = 189
Score = 38.1 bits (87), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 79 KKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
KK K+E+ G FGF +NE+ GR AM GFA +L E TG + Q+ +
Sbjct: 127 KKKKLEEADQGP--FFGFLPKNEISNGRWAMFGFAVGMLTEYATGSDFVQQMKI 178
>gi|427702864|ref|YP_007046086.1| Chlorophyll A-B binding protein [Cyanobium gracile PCC 6307]
gi|427346032|gb|AFY28745.1| Chlorophyll A-B binding protein [Cyanobium gracile PCC 6307]
Length = 48
Score = 38.1 bits (87), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGF E + GR+AM+GF L E +TG+GILAQ+ L
Sbjct: 9 FGFVNFAETWNGRLAMMGFVIGLATEILTGQGILAQVGL 47
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 198 PIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNI 238
P FGF E + GRLA +G L EI+TG+G LAQ+ +
Sbjct: 7 PRFGFVNFAETWNGRLAMMGFVIGLATEILTGQGILAQVGL 47
>gi|113475577|ref|YP_721638.1| CAB/ELIP/HLIP-like protein [Trichodesmium erythraeum IMS101]
gi|110166625|gb|ABG51165.1| CAB/ELIP/HLIP-related protein [Trichodesmium erythraeum IMS101]
Length = 56
Score = 38.1 bits (87), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 73 KAPPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
K P T P +++ FGF + E GR AMIGF +L E TG+G+L+ L L
Sbjct: 2 KQPQPTNTPNLDEP------KFGFNQYAERLNGRAAMIGFVLTLAIEYFTGEGLLSWLGL 55
>gi|443321519|ref|ZP_21050568.1| Chlorophyll A-B binding protein [Gloeocapsa sp. PCC 73106]
gi|442788779|gb|ELR98463.1| Chlorophyll A-B binding protein [Gloeocapsa sp. PCC 73106]
Length = 47
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 95 GFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
GFT E + GR+AM+GF +L E +TG+GIL+Q+ L
Sbjct: 9 GFTNFAETWNGRLAMLGFTIGILTELLTGQGILSQIGL 46
>gi|254412995|ref|ZP_05026767.1| hypothetical protein MC7420_2155 [Coleofasciculus chthonoplastes
PCC 7420]
gi|254413010|ref|ZP_05026782.1| hypothetical protein MC7420_2170 [Coleofasciculus chthonoplastes
PCC 7420]
gi|196180159|gb|EDX75151.1| hypothetical protein MC7420_2155 [Coleofasciculus chthonoplastes
PCC 7420]
gi|196180174|gb|EDX75166.1| hypothetical protein MC7420_2170 [Coleofasciculus chthonoplastes
PCC 7420]
Length = 47
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGFT E + GR+AM+GF + E +TG+GIL QL L
Sbjct: 8 FGFTSFAETWNGRLAMLGFVIGIATELLTGQGILQQLGL 46
>gi|282896474|ref|ZP_06304494.1| CAB/ELIP/HLIP superfamily of protein [Raphidiopsis brookii D9]
gi|281198580|gb|EFA73461.1| CAB/ELIP/HLIP superfamily of protein [Raphidiopsis brookii D9]
Length = 59
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
+GFT Q E++ GR+AMIGF A+ L E +G+G L
Sbjct: 20 WGFTPQAEIWNGRLAMIGFVAATLIELFSGQGFL 53
>gi|300867383|ref|ZP_07112039.1| CAB/ELIP/HLIP family protein [Oscillatoria sp. PCC 6506]
gi|300334634|emb|CBN57207.1| CAB/ELIP/HLIP family protein [Oscillatoria sp. PCC 6506]
Length = 48
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 95 GFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
GFT E + GR+AM+GF L E +TG+GIL+QL L
Sbjct: 10 GFTDFAETWNGRLAMLGFVIGLATEFLTGQGILSQLGL 47
>gi|428778229|ref|YP_007170016.1| CAB/ELIP/HLIP superfamily protein [Halothece sp. PCC 7418]
gi|428692508|gb|AFZ45802.1| putative CAB/ELIP/HLIP superfamily protein [Halothece sp. PCC 7418]
Length = 49
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
FGF E + GR+AMIGF A+LL E ++G+G+L
Sbjct: 10 FGFNTSAENWNGRLAMIGFVAALLTEILSGQGVL 43
>gi|356576079|ref|XP_003556162.1| PREDICTED: uncharacterized protein LOC100776918 [Glycine max]
Length = 173
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 79 KKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
K+ K+ED G FGF +NE+ GR AM GFA LL E TG + Q+ +
Sbjct: 111 KQKKLEDANQGP--FFGFIGKNEISNGRWAMFGFAVGLLTEYATGSDFVDQVKI 162
>gi|148239133|ref|YP_001224520.1| high light inducible protein [Synechococcus sp. WH 7803]
gi|147847672|emb|CAK23223.1| High light inducible protein [Synechococcus sp. WH 7803]
Length = 78
Score = 37.7 bits (86), Expect = 4.9, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 101 ELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEA 141
E F GR AM+GF ++ EG+TG+GIL Q+ L + Y A
Sbjct: 28 ERFNGRAAMLGFVIGVITEGLTGQGILHQIGLGPLVDGYAA 68
>gi|282895586|ref|ZP_06303720.1| CAB/ELIP/HLIP-related protein [Raphidiopsis brookii D9]
gi|282899363|ref|ZP_06307331.1| CAB/ELIP/HLIP-related protein [Cylindrospermopsis raciborskii
CS-505]
gi|281195730|gb|EFA70659.1| CAB/ELIP/HLIP-related protein [Cylindrospermopsis raciborskii
CS-505]
gi|281199426|gb|EFA74290.1| CAB/ELIP/HLIP-related protein [Raphidiopsis brookii D9]
Length = 56
Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 75 PPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLE 133
P T PK+E+ FGF + E GR AMIGF ++ E +T +G+LA L L+
Sbjct: 4 PQPTITPKLEEP------KFGFNEYAERLNGRAAMIGFILMVVIEYVTNQGVLAWLGLK 56
>gi|224100707|ref|XP_002334345.1| predicted protein [Populus trichocarpa]
gi|222871289|gb|EEF08420.1| predicted protein [Populus trichocarpa]
Length = 289
Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 93 GFGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
GFGFT +NEL G+ A+IGF + E +TGKG+L
Sbjct: 238 GFGFTSKNELINGQAAIIGFLFLIDFELLTGKGVL 272
>gi|116075175|ref|ZP_01472435.1| possible high light inducible protein [Synechococcus sp. RS9916]
gi|116067372|gb|EAU73126.1| possible high light inducible protein [Synechococcus sp. RS9916]
Length = 66
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 101 ELFVGRVAMIGFAASLLGEGITGKGILAQL 130
EL GRVAM+GF +L E ITG GI++QL
Sbjct: 29 ELLNGRVAMLGFVIGVLTEAITGHGIVSQL 58
>gi|242053441|ref|XP_002455866.1| hypothetical protein SORBIDRAFT_03g026510 [Sorghum bicolor]
gi|241927841|gb|EES00986.1| hypothetical protein SORBIDRAFT_03g026510 [Sorghum bicolor]
Length = 192
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 79 KKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
KK K+E+ G FGF +NE+ GR AM GFA +L E TG + Q+ +
Sbjct: 130 KKKKLEEADQGPF--FGFLPKNEISNGRWAMFGFAVGMLTEYATGSDFVQQMKI 181
>gi|297851834|ref|XP_002893798.1| hypothetical protein ARALYDRAFT_890988 [Arabidopsis lyrata subsp.
lyrata]
gi|297339640|gb|EFH70057.1| hypothetical protein ARALYDRAFT_890988 [Arabidopsis lyrata subsp.
lyrata]
Length = 174
Score = 37.7 bits (86), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 60 KAFSTVALFKSKTKAPPKT-KKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLG 118
K+ +TV + K K + K+ K+E G FGF +NE+ GR AM GFA +L
Sbjct: 92 KSVTTVEFQRQKAKELQEYFKQKKLEAA--GQGPFFGFQPKNEISNGRWAMFGFAVGMLT 149
Query: 119 EGITGKGILAQLNL 132
E TG ++ Q+ +
Sbjct: 150 EYATGSDLVDQVKI 163
>gi|113955265|ref|YP_730447.1| ferrochelatase [Synechococcus sp. CC9311]
gi|113882616|gb|ABI47574.1| Ferrochelatase [Synechococcus sp. CC9311]
Length = 56
Score = 37.7 bits (86), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 80 KPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
+ D T FGF+ E + GR+AM+GF L E +TG+GIL+Q+ L
Sbjct: 4 HHSINDMTNSTQTRFGFSNFAETWNGRLAMLGFVIGLGTELLTGQGILSQIGL 56
>gi|434395111|ref|YP_007130058.1| CAB/ELIP/HLIP-like protein [Gloeocapsa sp. PCC 7428]
gi|428266952|gb|AFZ32898.1| CAB/ELIP/HLIP-like protein [Gloeocapsa sp. PCC 7428]
Length = 57
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLE 133
FGF + E GR AMIGF ++ E +TGKG+LA L L+
Sbjct: 18 FGFNEYAERLNGRAAMIGFLLLIVIEYLTGKGVLAWLGLK 57
>gi|359811325|ref|NP_001241030.1| uncharacterized protein LOC100802195 [Glycine max]
gi|255645705|gb|ACU23346.1| unknown [Glycine max]
Length = 173
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 79 KKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
K+ K+ED G FGF +NE+ GR AM GFA LL E TG + Q+ +
Sbjct: 111 KQKKLEDANQGPF--FGFIGKNEISNGRWAMFGFAVGLLTEYATGSDFVDQVKI 162
>gi|428769274|ref|YP_007161064.1| CAB/ELIP/HLIP superfamily protein [Cyanobacterium aponinum PCC
10605]
gi|428683553|gb|AFZ53020.1| CAB/ELIP/HLIP superfamily protein [Cyanobacterium aponinum PCC
10605]
Length = 47
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 27/42 (64%)
Query: 91 SGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
G GFT E + GR+AM+GF + E +TGKGILAQL L
Sbjct: 5 EGKLGFTAFAENWNGRLAMLGFLIGIATELMTGKGILAQLGL 46
>gi|428772124|ref|YP_007163912.1| high intensity light-inducible lhc-like protein [Cyanobacterium
stanieri PCC 7202]
gi|428686403|gb|AFZ46263.1| high intensity light-inducible lhc-like protein [Cyanobacterium
stanieri PCC 7202]
Length = 46
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 92 GGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
G GFT E + GR+AM+GF +L E +TG+GIL+QL L
Sbjct: 5 GKLGFTAFAENWNGRLAMLGFLIGILTELLTGQGILSQLGL 45
>gi|225440430|ref|XP_002270357.1| PREDICTED: uncharacterized protein LOC100263187 [Vitis vinifera]
gi|297740337|emb|CBI30519.3| unnamed protein product [Vitis vinifera]
Length = 121
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 16/112 (14%)
Query: 24 LVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKPKV 83
+V+ Q L PF+H + S+ S+ V+ K PP + PKV
Sbjct: 19 IVSLLNQQL--SPFNH------------RSPCSTISQPKKKVSFRVQAAKLPPGVELPKV 64
Query: 84 EDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETG 135
E + GFT+ E++ R MIG + E I KGIL + ++ G
Sbjct: 65 EPKF--EAPFLGFTRTAEIWNSRACMIGLIGIFIVELILNKGILQVIGVDIG 114
>gi|291566124|dbj|BAI88396.1| high light inducible protein [Arthrospira platensis NIES-39]
Length = 64
Score = 37.7 bits (86), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGF +E GR AMIGF +L E TG+G+LA L L
Sbjct: 25 FGFNSYSERLNGRAAMIGFVITLAIEYFTGQGLLAWLGL 63
>gi|21536765|gb|AAM61097.1| unknown [Arabidopsis thaliana]
Length = 171
Score = 37.7 bits (86), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 60 KAFSTVALFKSKTKAPPKT-KKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLG 118
K+ +TV + K K + K+ K+E G FGF +NE+ GR AM GFA +L
Sbjct: 89 KSVTTVEFQRQKAKELQEYFKQKKLEAA--GQGPFFGFQPKNEISNGRWAMFGFAVGMLT 146
Query: 119 EGITGKGILAQLNL 132
E TG ++ Q+ +
Sbjct: 147 EYATGSDLVDQVKI 160
>gi|226510097|ref|NP_001143644.1| uncharacterized protein LOC100276366 [Zea mays]
gi|195623824|gb|ACG33742.1| hypothetical protein [Zea mays]
gi|414883524|tpg|DAA59538.1| TPA: hypothetical protein ZEAMMB73_111021 [Zea mays]
Length = 115
Score = 37.7 bits (86), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 73 KAPPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
K PP + P+V+ + + GFT+ E++ R MIG + + E + KGIL + +
Sbjct: 48 KLPPGVEAPRVQPKL--SEPFLGFTQTAEIWNSRACMIGLIGTFIVELVLNKGILQMIGV 105
Query: 133 ETG 135
E G
Sbjct: 106 EVG 108
>gi|158334480|ref|YP_001515652.1| high light inducible protein [Acaryochloris marina MBIC11017]
gi|158304721|gb|ABW26338.1| high light inducible protein [Acaryochloris marina MBIC11017]
Length = 52
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQL 130
+GF E F GR+AM GF +L+ E +TGKGI+ QL
Sbjct: 8 WGFNSFAETFSGRLAMYGFFIALITELLTGKGIIGQL 44
>gi|148239267|ref|YP_001224654.1| high light inducible protein [Synechococcus sp. WH 7803]
gi|147847806|emb|CAK23357.1| High light inducible protein [Synechococcus sp. WH 7803]
Length = 77
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 56 SSSSKAFSTVALFKSKTKAPPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAAS 115
+S+++A + ++ + K+P ++ + G+GF ++ E GR+AM+GF A+
Sbjct: 3 ASTTQAAKGLITHDAEGRDNVYAKEPPMQ--LTSPEAGWGFHERAERLNGRLAMLGFVAA 60
Query: 116 LLGEGITGKGILAQLNL 132
+ E +TG+G+L + L
Sbjct: 61 IATELLTGEGLLQAIGL 77
>gi|241865200|gb|ACS68678.1| stress enhanced protein 1 [Sonneratia alba]
gi|241865432|gb|ACS68748.1| stress enhanced protein 1 [Sonneratia alba]
Length = 78
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 101 ELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIP 137
++++GR+AM+GFAA++ E TGKG+L L T +P
Sbjct: 33 DIWLGRLAMVGFAAAISVEVATGKGLLENFGLTTPLP 69
>gi|443478182|ref|ZP_21067965.1| ferrochelatase [Pseudanabaena biceps PCC 7429]
gi|443016571|gb|ELS31205.1| ferrochelatase [Pseudanabaena biceps PCC 7429]
Length = 49
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGF E + GR+AM+GF L E +TG+GIL+Q+ L
Sbjct: 10 FGFNNFAETWNGRLAMLGFVIGLATELLTGQGILSQIGL 48
>gi|254432487|ref|ZP_05046190.1| conserved hypothetical protein [Cyanobium sp. PCC 7001]
gi|197626940|gb|EDY39499.1| conserved hypothetical protein [Cyanobium sp. PCC 7001]
Length = 47
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGF E + GR+AM+GF L E +TG+GILAQ+ L
Sbjct: 8 FGFVAFAETWNGRLAMMGFVIGLATEILTGQGILAQVGL 46
>gi|209524718|ref|ZP_03273265.1| CAB/ELIP/HLIP family protein [Arthrospira maxima CS-328]
gi|376004245|ref|ZP_09781986.1| conserved hypothetical protein [Arthrospira sp. PCC 8005]
gi|409993395|ref|ZP_11276537.1| CAB/ELIP/HLIP family protein [Arthrospira platensis str. Paraca]
gi|209494862|gb|EDZ95170.1| CAB/ELIP/HLIP family protein [Arthrospira maxima CS-328]
gi|291568626|dbj|BAI90898.1| high light inducible protein [Arthrospira platensis NIES-39]
gi|375327376|emb|CCE17739.1| conserved hypothetical protein [Arthrospira sp. PCC 8005]
gi|409935721|gb|EKN77243.1| CAB/ELIP/HLIP family protein [Arthrospira platensis str. Paraca]
Length = 47
Score = 37.7 bits (86), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 28/39 (71%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGFT+ E + GR+AM+GF + E +TG+GIL+QL L
Sbjct: 8 FGFTEFAETWNGRLAMLGFVIGVGTELLTGQGILSQLGL 46
>gi|11467378|ref|NP_043235.1| hypothetical protein CypaCp098 [Cyanophora paradoxa]
gi|1351742|sp|P48367.1|YCF17_CYAPA RecName: Full=Uncharacterized protein ycf17; AltName: Full=ORF48
gi|1016179|gb|AAA81266.1| similar to CAB/ELIP/HLIP superfamily of proteins [Cyanophora
paradoxa]
Length = 49
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
+GFT E + GR+AM+GF A+LL E +TG+G L
Sbjct: 10 WGFTSGAENWNGRLAMLGFIAALLTESLTGQGTL 43
>gi|302841565|ref|XP_002952327.1| hypothetical protein VOLCADRAFT_105462 [Volvox carteri f.
nagariensis]
gi|300262263|gb|EFJ46470.1| hypothetical protein VOLCADRAFT_105462 [Volvox carteri f.
nagariensis]
Length = 196
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 80 KPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIY 139
KP V+ F S G+ + E GR AMIGF A+ E + IL+QL+
Sbjct: 72 KPYVDSEFFKKSTGWN--ELPETINGRAAMIGFVAAAGAEILGSGSILSQLS-------K 122
Query: 140 EAEPLLLFFILFTLLGAIGAL-GDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGP 198
+P+LL L I G +G ++ L+ L EG
Sbjct: 123 APQPVLLVLTLIVAASTIPIYKGTQGDYLS-----------------ALKDTYSLPEGV- 164
Query: 199 IFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL 233
FT+ NE GRLA LG+ L+ E+I G+ L
Sbjct: 165 ---FTERNEKLHGRLAMLGLTTLLLLEMIIGRALL 196
>gi|195611260|gb|ACG27460.1| hypothetical protein [Zea mays]
Length = 116
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 73 KAPPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
K PP + P+V+ + + GFT+ E++ R MIG + + E + KGIL + +
Sbjct: 49 KLPPGVEAPRVQPKL--SEPFLGFTQTAEIWNSRACMIGLIGTFIVELVLNKGILQMIGV 106
Query: 133 ETG 135
E G
Sbjct: 107 EVG 109
>gi|254412690|ref|ZP_05026463.1| hypothetical protein MC7420_1334 [Coleofasciculus chthonoplastes
PCC 7420]
gi|196180425|gb|EDX75416.1| hypothetical protein MC7420_1334 [Coleofasciculus chthonoplastes
PCC 7420]
Length = 62
Score = 37.4 bits (85), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 23/40 (57%)
Query: 93 GFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FG+T E GR AMI F A LL E ITGKG+ L L
Sbjct: 22 AFGWTPYAEQINGRFAMIAFVALLLIELITGKGLFGWLGL 61
>gi|428778912|ref|YP_007170698.1| Chlorophyll A-B binding protein [Dactylococcopsis salina PCC 8305]
gi|428693191|gb|AFZ49341.1| Chlorophyll A-B binding protein [Dactylococcopsis salina PCC 8305]
Length = 49
Score = 37.4 bits (85), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
FGF E + GR+AMIGF A+LL E ++G+G+L
Sbjct: 10 FGFNPSAENWNGRLAMIGFVAALLTEILSGQGVL 43
>gi|148242619|ref|YP_001227776.1| high light inducible protein [Synechococcus sp. RCC307]
gi|147850929|emb|CAK28423.1| High light inducible protein [Synechococcus sp. RCC307]
Length = 80
Score = 37.4 bits (85), Expect = 6.9, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 98 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEA 141
K E F GR AM+GF ++ EG+TG+GI+ Q+ L + Y A
Sbjct: 27 KDVERFNGRAAMLGFVIGVITEGLTGQGIIHQIGLGPLVDGYAA 70
>gi|224090769|ref|XP_002309074.1| HLIP/One helix protein [Populus trichocarpa]
gi|222855050|gb|EEE92597.1| HLIP/One helix protein [Populus trichocarpa]
Length = 119
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 155 GAIGALGDRGKFVDEPDEPT-GLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRL 213
G + R + + EP + A +PPG L + K P GFT++ E++ R
Sbjct: 26 GKVSLFNHRSQIIKTSKEPVFRIQAAKLPPGVEL-PKVEPKFQAPFLGFTRTAEIWNSRA 84
Query: 214 AQLGIAFSLIGEIITGKGALAQLNIETG 241
+G+ + E+I KG L + ++ G
Sbjct: 85 CMMGLIGVFVVELIINKGILQVIGVDIG 112
>gi|254430464|ref|ZP_05044167.1| putative high light inducible protein [Cyanobium sp. PCC 7001]
gi|197624917|gb|EDY37476.1| putative high light inducible protein [Cyanobium sp. PCC 7001]
Length = 57
Score = 37.4 bits (85), Expect = 6.9, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 90 TSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGI 126
+ G+GF ++ EL GR+AM+GF L+ E ++G+GI
Sbjct: 8 SESGWGFHRRAELLNGRMAMLGFVIGLMVEALSGQGI 44
>gi|224013212|ref|XP_002295258.1| fucoxanthin chlorophyll a/c protein, LI818 clade [Thalassiosira
pseudonana CCMP1335]
gi|220969220|gb|EED87562.1| fucoxanthin chlorophyll a/c protein, LI818 clade [Thalassiosira
pseudonana CCMP1335]
Length = 209
Score = 37.4 bits (85), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 61/146 (41%), Gaps = 7/146 (4%)
Query: 98 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLE-TGIPIYEAEPLLLFFILFTLLGA 156
++ E+ GRVAM+ L+GE + G L + I + P ++ T +GA
Sbjct: 64 REAEVTHGRVAMLAVLGFLVGEAVEGSSFLFDAQISGPAITHFTQVPDGWDALIITFIGA 123
Query: 157 IGALGDRGKFVD----EPDEPTGLGGAVIPPGKGLRSALGLKEGGP-IFGFTKSNELFVG 211
A + +VD D+P L + P G LGLK P + EL G
Sbjct: 124 AEAQRAQTGWVDPNDASYDQPGLLKDSYYPGDIGF-DPLGLKPEDPEELNTMITKELQNG 182
Query: 212 RLAQLGIAFSLIGEIITGKGALAQLN 237
RLA L A L E + GKG L +
Sbjct: 183 RLAMLAAAGFLAQEAVDGKGILEHFS 208
>gi|428299681|ref|YP_007137987.1| high light inducible protein [Calothrix sp. PCC 6303]
gi|428236225|gb|AFZ02015.1| high light inducible protein [Calothrix sp. PCC 6303]
Length = 59
Score = 37.4 bits (85), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
+GFT Q E++ GR+AMIGF A+ L E +G+G L
Sbjct: 20 WGFTPQAEVWNGRLAMIGFVAAALIELFSGQGFL 53
>gi|384247026|gb|EIE20514.1| light harvesting complex protein I-20 [Coccomyxa subellipsoidea
C-169]
Length = 229
Score = 37.4 bits (85), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 72/187 (38%), Gaps = 31/187 (16%)
Query: 76 PKTKKPKVEDGIFGTSG----GFGFTKQN-------ELFVGRVAMIGFA----ASLLGEG 120
P + P DG+ G+ G G G T N EL R AM G A A LLG+G
Sbjct: 39 PGSDTPAYLDGLPGSFGFDPFGLGSTPANLQRFQEAELVHSRWAMAGVAGALGAELLGQG 98
Query: 121 ITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGA--IGALGDRGKFVDEPD--EPTGL 176
+ L +N G P Y P+ F L TLL + G + EPD +
Sbjct: 99 DWYQAPLWAVN--GGAPTYLGIPVP--FNLSTLLAIEFVAIAGAEAQRNAEPDAEKRKYP 154
Query: 177 GGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQL 236
GGA P LG + + K EL GRLA L + TGKG L L
Sbjct: 155 GGAFDP--------LGFSKDSKVLEENKLKELKNGRLAMLAFVGFIAQHAATGKGPLEAL 206
Query: 237 NIETGIP 243
+ P
Sbjct: 207 KLHLADP 213
>gi|126659669|ref|ZP_01730798.1| hypothetical protein CY0110_29084 [Cyanothece sp. CCY0110]
gi|126619014|gb|EAZ89754.1| hypothetical protein CY0110_29084 [Cyanothece sp. CCY0110]
Length = 70
Score = 37.4 bits (85), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQL 130
FGF K E GR AMIGF + L EG+TG+G++ L
Sbjct: 31 FGFNKYAEKLNGRFAMIGFISLLAFEGLTGQGLVTWL 67
>gi|116075467|ref|ZP_01472727.1| putative high light inducible protein [Synechococcus sp. RS9916]
gi|116067664|gb|EAU73418.1| putative high light inducible protein [Synechococcus sp. RS9916]
Length = 78
Score = 37.4 bits (85), Expect = 7.3, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 99 QNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
Q E F GR AM+GF +L E +TG+GI+ Q+ L
Sbjct: 26 QVERFNGRAAMLGFVIGVLTEALTGQGIIHQIGL 59
>gi|412988906|emb|CCO15497.1| unknown [Bathycoccus prasinos]
Length = 90
Score = 37.4 bits (85), Expect = 7.3, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 37/77 (48%)
Query: 56 SSSSKAFSTVALFKSKTKAPPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAAS 115
++ K +T+ ++K K K K + + S FGFTK+NE+ GR M G
Sbjct: 3 TTQQKDNTTIEYQRTKAKEMVKYFKEQQYQQLVEDSTVFGFTKKNEINNGRWTMFGLLVG 62
Query: 116 LLGEGITGKGILAQLNL 132
++ E TG + Q+ L
Sbjct: 63 MMTEYATGVDFIDQIKL 79
>gi|427710430|ref|YP_007052807.1| CAB/ELIP/HLIP family protein [Nostoc sp. PCC 7107]
gi|427362935|gb|AFY45657.1| CAB/ELIP/HLIP-related protein [Nostoc sp. PCC 7107]
Length = 56
Score = 37.4 bits (85), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 72 TKAPPKTKKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLN 131
T+ P T PK+ED FGF + E GR AMIGF ++ E +T +G+L+ L
Sbjct: 2 TQTQP-TVTPKLEDP------KFGFNEYAERLNGRAAMIGFGLMVVIEYVTNQGVLSWLG 54
Query: 132 LE 133
L+
Sbjct: 55 LK 56
>gi|86608000|ref|YP_476762.1| CAB/ELIP/HLIP family protein [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86556542|gb|ABD01499.1| CAB/ELIP/HLIP family protein [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 56
Score = 37.4 bits (85), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGFT E + GR+AM+GF + E +TG+GIL+Q+ L
Sbjct: 17 FGFTTFAEKWNGRLAMLGFVIGVATELLTGQGILSQIGL 55
>gi|443325403|ref|ZP_21054100.1| hypothetical protein Xen7305DRAFT_00041230 [Xenococcus sp. PCC
7305]
gi|442795000|gb|ELS04390.1| hypothetical protein Xen7305DRAFT_00041230 [Xenococcus sp. PCC
7305]
Length = 47
Score = 37.4 bits (85), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 200 FGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQL 236
FGFT+ E + GRLA LG+ + E++TG+G L+QL
Sbjct: 8 FGFTQFAENWNGRLAMLGLVVGIATEVMTGQGILSQL 44
>gi|428317706|ref|YP_007115588.1| CAB/ELIP/HLIP family protein [Oscillatoria nigro-viridis PCC 7112]
gi|428241386|gb|AFZ07172.1| CAB/ELIP/HLIP family protein [Oscillatoria nigro-viridis PCC 7112]
Length = 47
Score = 37.4 bits (85), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 95 GFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
GFT+ E + GR+AM+GF L E +TG+GIL+Q+ L
Sbjct: 9 GFTEFAETWNGRLAMLGFVIGLATEFLTGQGILSQIGL 46
>gi|87301421|ref|ZP_01084262.1| possible high light inducible protein [Synechococcus sp. WH 5701]
gi|87284389|gb|EAQ76342.1| possible high light inducible protein [Synechococcus sp. WH 5701]
Length = 48
Score = 37.4 bits (85), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGF E + GR+AM+GF L E +TG+GIL+Q+ L
Sbjct: 9 FGFVNFAETWNGRLAMLGFVIGLATELLTGQGILSQIGL 47
>gi|334118123|ref|ZP_08492213.1| CAB/ELIP/HLIP family protein [Microcoleus vaginatus FGP-2]
gi|333460108|gb|EGK88718.1| CAB/ELIP/HLIP family protein [Microcoleus vaginatus FGP-2]
Length = 47
Score = 37.0 bits (84), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 95 GFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
GFT+ E + GR+AM+GF L E +TG+GIL+Q+ L
Sbjct: 9 GFTEFAETWNGRLAMLGFVIGLATEFLTGQGILSQIGL 46
>gi|224013064|ref|XP_002295184.1| fucoxanthin chlorophyll a/c protein, LI818 clade [Thalassiosira
pseudonana CCMP1335]
gi|220969146|gb|EED87488.1| fucoxanthin chlorophyll a/c protein, LI818 clade [Thalassiosira
pseudonana CCMP1335]
Length = 209
Score = 37.0 bits (84), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 61/146 (41%), Gaps = 7/146 (4%)
Query: 98 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLE-TGIPIYEAEPLLLFFILFTLLGA 156
++ E+ GRVAM+ L+GE + G L + I + P ++ T +GA
Sbjct: 64 REAEVTHGRVAMLAVLGFLVGEAVEGSSFLFDAQISGPAITHFTQVPDGWDALIVTFIGA 123
Query: 157 IGALGDRGKFVD----EPDEPTGLGGAVIPPGKGLRSALGLKEGGP-IFGFTKSNELFVG 211
A + +VD D+P L + P G LGLK P + EL G
Sbjct: 124 AEAQRAQTGWVDPNDASYDQPGLLKDSYYPGDIGF-DPLGLKPEDPEELNTMITKELQNG 182
Query: 212 RLAQLGIAFSLIGEIITGKGALAQLN 237
RLA L A L E + GKG L +
Sbjct: 183 RLAMLAAAGFLAQEAVDGKGILEHFS 208
>gi|254430608|ref|ZP_05044311.1| conserved hypothetical protein [Cyanobium sp. PCC 7001]
gi|197625061|gb|EDY37620.1| conserved hypothetical protein [Cyanobium sp. PCC 7001]
Length = 47
Score = 37.0 bits (84), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGF+ E + GR+AM+GF L E +TG+GIL+Q+ L
Sbjct: 8 FGFSAFAETWNGRLAMLGFVIGLATELLTGQGILSQVGL 46
>gi|384253496|gb|EIE26971.1| hypothetical protein COCSUDRAFT_59463 [Coccomyxa subellipsoidea
C-169]
Length = 169
Score = 37.0 bits (84), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 42/122 (34%)
Query: 105 GRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLL--FFILFTLLGAIGALGD 162
GR+AM+GF A++ E ++GKG+L+Q + EP L+ F+LF A G+L
Sbjct: 78 GRLAMLGFVAAVAAELVSGKGVLSQ---------WAQEPTLITVTFVLF----AAGSLAP 124
Query: 163 RGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSL 222
K D+ G+ L GP FT S E+ GR A +G A +L
Sbjct: 125 LFKNADK--------------GQSL---------GP---FTPSAEIINGRAAMIGFA-AL 157
Query: 223 IG 224
IG
Sbjct: 158 IG 159
>gi|67925182|ref|ZP_00518551.1| possible high light inducible polypeptide HliC [Crocosphaera
watsonii WH 8501]
gi|416404003|ref|ZP_11687655.1| putative CAB/ELIP/HLIP family protein [Crocosphaera watsonii WH
0003]
gi|67852963|gb|EAM48353.1| possible high light inducible polypeptide HliC [Crocosphaera
watsonii WH 8501]
gi|357261601|gb|EHJ10849.1| putative CAB/ELIP/HLIP family protein [Crocosphaera watsonii WH
0003]
Length = 47
Score = 37.0 bits (84), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
GFT E + GR+AM+GF ++ E +TG+GIL+QL L
Sbjct: 8 LGFTAFAENWNGRLAMLGFVIGIVTEYMTGQGILSQLGL 46
>gi|18409870|ref|NP_565018.1| Rieske (2Fe-2S) domain-containing protein [Arabidopsis thaliana]
gi|12323736|gb|AAG51832.1|AC016163_21 unknown protein; 39989-38742 [Arabidopsis thaliana]
gi|20260264|gb|AAM13030.1| unknown protein [Arabidopsis thaliana]
gi|21592833|gb|AAM64783.1| unknown [Arabidopsis thaliana]
gi|22136512|gb|AAM91334.1| unknown protein [Arabidopsis thaliana]
gi|26453214|dbj|BAC43681.1| unknown protein [Arabidopsis thaliana]
gi|332197087|gb|AEE35208.1| Rieske (2Fe-2S) domain-containing protein [Arabidopsis thaliana]
Length = 287
Score = 37.0 bits (84), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 27/37 (72%)
Query: 91 SGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
S GFGFTK+NE+ G+ A+IGF L E +TGKG+L
Sbjct: 234 SEGFGFTKKNEVINGKAAVIGFLLLLDFELLTGKGLL 270
>gi|163867225|gb|ABY47652.1| one-helix protein [Ipomoea nil]
Length = 165
Score = 37.0 bits (84), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGF +NE+ GR AM GFA +L E TG + QL +
Sbjct: 116 FGFIGKNEISNGRWAMFGFAVGMLTEYATGSDFVDQLKI 154
>gi|113954603|ref|YP_731722.1| Lhc-like protein Lhl4 [Synechococcus sp. CC9311]
gi|113881954|gb|ABI46912.1| Lhc-like protein Lhl4 [Synechococcus sp. CC9311]
Length = 51
Score = 37.0 bits (84), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 90 TSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
TS FGF E + GR+AM+GF L E +TG+GIL Q+ L
Sbjct: 8 TSSRFGFVNFAETWNGRLAMLGFVIGLGTELLTGQGILTQVGL 50
>gi|157965825|gb|ABW06949.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 342
Score = 37.0 bits (84), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 20/159 (12%)
Query: 97 TKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGA 156
TK E+ GR+AM + ITGK L L+ P+ L T G+
Sbjct: 99 TKLQEIKNGRLAMTAMLGLEVQSHITGKSPLTNLSEHLSHPLSAN--------LLTGGGS 150
Query: 157 IGALGDRGKFVDEPDEPTGLGGAVIPPG--------KGLRSALGLKEGGPIFGFTKSNEL 208
+ G+ D P G P +G A GL +F + +E+
Sbjct: 151 LAMFSTAGQKTDR--RPLWFPGGYAPSWLTGQHFGDRGFDPA-GLAADPKVFERMRVSEV 207
Query: 209 FVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEI 247
+ GRLA L I +++ + I GKGA + GI +NE+
Sbjct: 208 YHGRLAMLAIVGAVVPD-IQGKGAWYEAAQSAGIGVNEV 245
>gi|423066287|ref|ZP_17055077.1| hypothetical protein SPLC1_S411850 [Arthrospira platensis C1]
gi|406712329|gb|EKD07518.1| hypothetical protein SPLC1_S411850 [Arthrospira platensis C1]
Length = 69
Score = 37.0 bits (84), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQL 130
FGF K E GR+AMIGF ++L E +TG G++ L
Sbjct: 30 FGFNKYAEKLNGRLAMIGFISALALEALTGHGVIGWL 66
>gi|359463200|ref|ZP_09251763.1| high light inducible protein [Acaryochloris sp. CCMEE 5410]
Length = 86
Score = 37.0 bits (84), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 127
FGF E F GRVAMIGF +L E +TG+GI+
Sbjct: 49 FGFNTFAETFSGRVAMIGFDLLVLTELLTGRGII 82
>gi|86607435|ref|YP_476198.1| CAB/ELIP/HLIP family protein [Synechococcus sp. JA-3-3Ab]
gi|86555977|gb|ABD00935.1| CAB/ELIP/HLIP family protein [Synechococcus sp. JA-3-3Ab]
Length = 56
Score = 37.0 bits (84), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGFT E + GR+AM+GF + E +TG+GIL+Q+ L
Sbjct: 17 FGFTPFAEKWNGRLAMLGFVIGVATELLTGQGILSQIGL 55
>gi|427702162|ref|YP_007045384.1| Chlorophyll A-B binding protein [Cyanobium gracile PCC 6307]
gi|427345330|gb|AFY28043.1| Chlorophyll A-B binding protein [Cyanobium gracile PCC 6307]
Length = 47
Score = 37.0 bits (84), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGF E + GR+AM+GF L E +TG+GILAQ+ L
Sbjct: 8 FGFVAFAETWNGRLAMLGFVIGLGTEILTGQGILAQIGL 46
>gi|9624495|gb|AAF90200.1|AF287276_2 chlorophyll a/b-binding protein precursor [Hordeum vulgare]
Length = 228
Score = 37.0 bits (84), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 72/203 (35%), Gaps = 37/203 (18%)
Query: 69 KSKTKAPPKTKKPKVEDGIFGTSGGFG------------FTKQNELFVGRVAMIGFAASL 116
++K P + P DG GF + Q EL GR AM+G A L
Sbjct: 27 QAKGSWLPGLQSPAYLDGSLAGDNGFDPLALAEDPEDLRWFVQAELVNGRWAMLGVAGML 86
Query: 117 LGEGITGKGIL-AQLNLETGIPIYEAEPLLLFFILFTLLGAI-----------GALGDRG 164
+ E +T G+L A + G Y A LF I F L + G++
Sbjct: 87 IPEVLTKAGLLNAPEWYDAGKETYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDP 146
Query: 165 KFVDE--PDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSL 222
F P G G+V P L A L+ K EL GRLA L L
Sbjct: 147 IFKSYSLPPHECGYPGSVFNP---LNFAPTLE--------NKEKELANGRLAMLAFLGFL 195
Query: 223 IGEIITGKGALAQLNIETGIPIN 245
+ +TGKG L P +
Sbjct: 196 VQHNVTGKGPFENLQQHLADPWH 218
>gi|302191600|tpg|DAA33888.1| TPA_inf: stress-enhanced protein 5 [Glaucocystis nostochinearum]
Length = 169
Score = 37.0 bits (84), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL-ETGIPIYEAEPLLLFFILFT 152
FG + E F GR AM+GF L+ E +TG+GI Q+ L +T + L LFT
Sbjct: 91 FGMVQFAEQFNGRAAMLGFVLGLVTEYLTGEGIFEQVGLVDTKSQLLFLLALTTTSALFT 150
Query: 153 LLGAI 157
LLG +
Sbjct: 151 LLGYV 155
>gi|87301154|ref|ZP_01083995.1| possible high light inducible polypeptide HliC [Synechococcus sp.
WH 5701]
gi|87284122|gb|EAQ76075.1| possible high light inducible polypeptide HliC [Synechococcus sp.
WH 5701]
Length = 47
Score = 37.0 bits (84), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132
FGF E + GR+AM+GF L E +TG+GIL+Q+ L
Sbjct: 8 FGFVAFAETWNGRLAMLGFVIGLATELLTGQGILSQIGL 46
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.139 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,393,610,618
Number of Sequences: 23463169
Number of extensions: 195935976
Number of successful extensions: 520924
Number of sequences better than 100.0: 639
Number of HSP's better than 100.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 271
Number of HSP's that attempted gapping in prelim test: 519616
Number of HSP's gapped (non-prelim): 1261
length of query: 277
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 137
effective length of database: 9,074,351,707
effective search space: 1243186183859
effective search space used: 1243186183859
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 76 (33.9 bits)