BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023799
         (277 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
           Protein Complex From Pea Thylakoid Membranes
          Length = 232

 Score = 30.4 bits (67), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 25/55 (45%)

Query: 191 LGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN 245
           LGL +    F   K  EL  GRLA   +    +  I+TGKG L  L      P+N
Sbjct: 164 LGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 218


>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
 pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
 pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
          Length = 232

 Score = 30.4 bits (67), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 25/55 (45%)

Query: 191 LGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN 245
           LGL +    F   K  EL  GRLA   +    +  I+TGKG L  L      P+N
Sbjct: 164 LGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 218


>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
           Complex At 2.72 Angstrom Resolution
 pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
           Complex At 2.72 Angstrom Resolution
 pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
           Complex At 2.72 Angstrom Resolution
 pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
           Complex At 2.72 Angstrom Resolution
 pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
           Complex At 2.72 Angstrom Resolution
 pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
           Complex At 2.72 Angstrom Resolution
 pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
           Complex At 2.72 Angstrom Resolution
 pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
           Complex At 2.72 Angstrom Resolution
 pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
           Complex At 2.72 Angstrom Resolution
 pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
           Complex At 2.72 Angstrom Resolution
          Length = 232

 Score = 29.6 bits (65), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 25/55 (45%)

Query: 191 LGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN 245
           LGL +    F   K  E+  GRLA   +    +  I+TGKG L  L      P+N
Sbjct: 164 LGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 218


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.141    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,376,056
Number of Sequences: 62578
Number of extensions: 237952
Number of successful extensions: 434
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 422
Number of HSP's gapped (non-prelim): 18
length of query: 277
length of database: 14,973,337
effective HSP length: 98
effective length of query: 179
effective length of database: 8,840,693
effective search space: 1582484047
effective search space used: 1582484047
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)