Query 023799
Match_columns 277
No_of_seqs 199 out of 1319
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 06:45:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023799.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023799hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00099 light-harvesting comp 100.0 1.5E-33 3.3E-38 256.8 10.9 165 70-245 43-229 (243)
2 PLN00101 Photosystem I light-h 100.0 2.2E-33 4.8E-38 256.5 11.9 171 70-245 52-242 (250)
3 PLN00147 light-harvesting comp 100.0 7E-33 1.5E-37 253.6 12.1 173 69-245 43-242 (252)
4 PLN00098 light-harvesting comp 100.0 1.6E-32 3.6E-37 252.8 12.5 176 70-245 61-257 (267)
5 PLN00100 light-harvesting comp 100.0 1.5E-32 3.2E-37 250.2 10.2 176 70-264 34-227 (246)
6 PLN00097 photosystem I light h 100.0 3.1E-32 6.8E-37 248.1 11.5 173 70-245 43-239 (244)
7 PLN00048 photosystem I light h 100.0 6.6E-32 1.4E-36 248.5 10.7 172 74-245 45-252 (262)
8 PLN00025 photosystem II light 100.0 3.1E-31 6.8E-36 243.8 10.1 162 76-245 57-248 (262)
9 PLN00187 photosystem II light- 100.0 6.4E-31 1.4E-35 244.0 11.3 161 73-245 54-277 (286)
10 PLN00171 photosystem light-ha 100.0 1.3E-29 2.8E-34 238.1 10.6 167 79-246 118-316 (324)
11 PLN00089 fucoxanthin-chlorophy 100.0 1.2E-29 2.6E-34 227.1 8.5 179 48-234 12-208 (209)
12 PF00504 Chloroa_b-bind: Chlor 99.9 1.3E-27 2.8E-32 203.3 9.6 140 80-226 1-156 (156)
13 PLN00170 photosystem II light- 99.9 9E-28 2E-32 220.0 8.5 155 80-237 66-254 (255)
14 PLN00120 fucoxanthin-chlorophy 99.9 5.9E-24 1.3E-28 189.6 5.5 129 93-232 60-197 (202)
15 PLN00084 photosystem II subuni 99.5 1.3E-14 2.8E-19 126.1 4.9 55 199-253 131-186 (214)
16 PLN00098 light-harvesting comp 99.4 3.5E-13 7.6E-18 124.9 5.9 69 165-235 64-132 (267)
17 PLN00101 Photosystem I light-h 99.4 5.7E-13 1.2E-17 122.5 5.3 59 173-233 63-121 (250)
18 PLN00097 photosystem I light h 99.3 4.1E-12 8.8E-17 116.5 4.9 67 164-232 45-111 (244)
19 PLN00147 light-harvesting comp 99.3 2.7E-12 5.8E-17 118.2 3.5 65 166-232 48-112 (252)
20 PLN00170 photosystem II light- 99.2 7.6E-12 1.6E-16 115.3 5.4 54 181-234 73-126 (255)
21 PLN00187 photosystem II light- 99.2 2.3E-11 5E-16 113.8 5.2 57 172-230 61-160 (286)
22 PLN00048 photosystem I light h 99.2 4.2E-11 9.2E-16 110.9 6.5 61 173-235 52-117 (262)
23 PLN00025 photosystem II light 99.2 1.6E-11 3.5E-16 113.7 3.2 51 182-232 70-120 (262)
24 PLN00100 light-harvesting comp 99.1 7.1E-11 1.5E-15 108.4 7.1 61 166-228 38-98 (246)
25 PLN00171 photosystem light-ha 99.1 1.5E-11 3.3E-16 116.4 2.5 52 182-233 127-178 (324)
26 PLN00099 light-harvesting comp 99.1 5.1E-11 1.1E-15 109.4 5.3 62 166-229 47-108 (243)
27 PF00504 Chloroa_b-bind: Chlor 99.1 2.3E-11 5E-16 103.5 2.6 49 182-231 9-57 (156)
28 PLN00089 fucoxanthin-chlorophy 99.0 4.3E-10 9.2E-15 101.3 6.2 49 183-231 54-103 (209)
29 PHA02337 putative high light i 99.0 5.8E-10 1.3E-14 73.5 3.3 31 96-126 1-31 (35)
30 PHA02337 putative high light i 98.9 1.3E-09 2.9E-14 71.8 3.0 31 202-232 1-31 (35)
31 PLN00084 photosystem II subuni 98.9 3.3E-09 7.1E-14 92.7 5.5 52 97-148 135-187 (214)
32 PLN00120 fucoxanthin-chlorophy 98.7 6.1E-09 1.3E-13 93.4 1.5 45 181-226 41-87 (202)
33 PLN00014 light-harvesting-like 98.3 5.9E-07 1.3E-11 81.8 3.8 38 203-240 159-196 (250)
34 PLN00014 light-harvesting-like 98.2 7.3E-07 1.6E-11 81.2 3.5 35 98-132 160-194 (250)
35 PLN02449 ferrochelatase 82.5 0.85 1.8E-05 46.3 2.3 30 91-128 455-484 (485)
36 PLN02449 ferrochelatase 76.7 1.5 3.2E-05 44.6 1.9 22 213-234 463-484 (485)
37 PF09323 DUF1980: Domain of un 22.7 1.7E+02 0.0036 25.5 4.8 44 213-264 5-48 (182)
38 KOG0593 Predicted protein kina 22.6 47 0.001 32.7 1.4 33 94-127 164-202 (396)
No 1
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=100.00 E-value=1.5e-33 Score=256.84 Aligned_cols=165 Identities=22% Similarity=0.251 Sum_probs=117.9
Q ss_pred ccCCCCCCCCCCCCCCCcCCCCCCC------------CccchhhhhhhHHHHHHHHHHHHhhhhhccchhhhh---cccc
Q 023799 70 SKTKAPPKTKKPKVEDGIFGTSGGF------------GFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQL---NLET 134 (277)
Q Consensus 70 ~ks~a~p~~~~p~~~dg~~~~~~~f------------Gf~r~aEl~nGR~AMLG~~g~lv~E~~tg~g~~~q~---~~~~ 134 (277)
.+....|+.+.|+++||.+.+|.+| .|+|++|||||||||||++|++++|.++...+.+.. ....
T Consensus 43 ~~~~w~P~~~~P~~Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~~~w~~a~~~~~~~~ 122 (243)
T PLN00099 43 MSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPG 122 (243)
T ss_pred ccccccCCCCCCccCCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhccCCcccccchhccCc
Confidence 3456789999999999999887554 355899999999999999999999987642211100 0011
Q ss_pred Ccccccc-----hhH-HHHHHHHHHHHHHhhhccCCCccCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccchhhh
Q 023799 135 GIPIYEA-----EPL-LLFFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNEL 208 (277)
Q Consensus 135 G~p~~~~-----~pl-~l~~i~~~llgai~~~~~~~~~~~~~~~p~g~~~~~~~PGd~~~dPlGL~~~~~~~~~~k~kEL 208 (277)
|...+.. ..+ .++++.+.+++++|.... .... + ....|||| .|||+|+++++++++.+|.|||
T Consensus 123 g~~~~~g~~~~~~~l~~~~~iqvl~ig~~E~~r~----~~~~--~----~~~~yPGd-~FDPlGl~kd~~~~~~~k~kEL 191 (243)
T PLN00099 123 GQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRS----MEKD--P----EKKKYPGG-AFDPLGYSKDPKKFEEYKVKEI 191 (243)
T ss_pred chhhhccCccchhhHHHHHHHHHHHHHHHHHHhh----ccCC--C----CCCcCCCC-cCCcccccCCHHHHHHHHHHHH
Confidence 1111100 011 122344556777764311 1100 1 11248999 6899999888778889999999
Q ss_pred hhhhhHHHHHHHHHHHH-HhcCcChHHHhHHhhCCCcc
Q 023799 209 FVGRLAQLGIAFSLIGE-IITGKGALAQLNIETGIPIN 245 (277)
Q Consensus 209 kNGRLAMlg~~G~ivqE-~vTGkg~l~~l~~~~g~p~~ 245 (277)
|||||||+|++|+++|+ ++||++|+++|..|++||++
T Consensus 192 kNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hladp~~ 229 (243)
T PLN00099 192 KNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH 229 (243)
T ss_pred HhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhcCCcc
Confidence 99999999999999999 57999999999999999985
No 2
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=100.00 E-value=2.2e-33 Score=256.46 Aligned_cols=171 Identities=29% Similarity=0.322 Sum_probs=124.4
Q ss_pred ccCCCCCCCCCCCCCCCcCCCCCCC---C---------ccchhhhhhhHHHHHHHHHHHHhhhhhccchhhhhc-cccCc
Q 023799 70 SKTKAPPKTKKPKVEDGIFGTSGGF---G---------FTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLN-LETGI 136 (277)
Q Consensus 70 ~ks~a~p~~~~p~~~dg~~~~~~~f---G---------f~r~aEl~nGR~AMLG~~g~lv~E~~tg~g~~~q~~-~~~G~ 136 (277)
.+....|....|+++||.+.+|.+| | |+|++||+||||||||++|++++|++++.+++..-. .+.|.
T Consensus 52 ~r~~W~P~~~~P~~LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~~~p~w~~ag~ 131 (250)
T PLN00101 52 KKGEWLPGLASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGK 131 (250)
T ss_pred cccccCCCCCCCcccCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCcCCCccccccc
Confidence 4666788889999999999887653 3 347999999999999999999999999887753211 12333
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhccCCCc--cCCCCCCC----C-CCCCcCCCCCCCCCCCCCCCCCCCccccchhhhh
Q 023799 137 PIYEAEPLLLFFILFTLLGAIGALGDRGKF--VDEPDEPT----G-LGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELF 209 (277)
Q Consensus 137 p~~~~~pl~l~~i~~~llgai~~~~~~~~~--~~~~~~p~----g-~~~~~~~PGd~~~dPlGL~~~~~~~~~~k~kELk 209 (277)
..+...+..++++.+.+++++|.+...... .....++. + .+++..|||+ .||||||++++ ++|+||||
T Consensus 132 ~~~~~~~~~l~~ie~~~mg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~gd~~YPGG-~FDPLgl~~~~----~~k~kEIK 206 (250)
T PLN00101 132 AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAPTE----EAKEKELA 206 (250)
T ss_pred hhhcccchHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccCCccccCCCC-ccCccCCCccH----HHHHHHHh
Confidence 323233334455667788888764321111 00001111 0 1234468998 58999997642 68999999
Q ss_pred hhhhHHHHHHHHHHHHHhcCcChHHHhHHhhCCCcc
Q 023799 210 VGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN 245 (277)
Q Consensus 210 NGRLAMlg~~G~ivqE~vTGkg~l~~l~~~~g~p~~ 245 (277)
||||||+|++|+++|+++||+||++||..|+.||++
T Consensus 207 NGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hladP~~ 242 (250)
T PLN00101 207 NGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWH 242 (250)
T ss_pred hcchHHHHHhhHhheehccCCChHHHHHHHhcCCcc
Confidence 999999999999999999999999999999999975
No 3
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=100.00 E-value=7e-33 Score=253.58 Aligned_cols=173 Identities=25% Similarity=0.249 Sum_probs=124.7
Q ss_pred cccCCCCCCCCCCCCCCCcCCCCCCC---Cc---------cchhhhhhhHHHHHHHHHHHHhhhhhccchhh---hhccc
Q 023799 69 KSKTKAPPKTKKPKVEDGIFGTSGGF---GF---------TKQNELFVGRVAMIGFAASLLGEGITGKGILA---QLNLE 133 (277)
Q Consensus 69 ~~ks~a~p~~~~p~~~dg~~~~~~~f---Gf---------~r~aEl~nGR~AMLG~~g~lv~E~~tg~g~~~---q~~~~ 133 (277)
.++....|+...|+++||.+.+|.+| || +|++||+||||||||++|++++|+++..++.. ++.
T Consensus 43 ~~R~~wlP~~~~P~~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~~~p~w~~-- 120 (252)
T PLN00147 43 QERPTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIRNLPVWYE-- 120 (252)
T ss_pred CCccccCCCCCCCCcCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCCcCCcchhh--
Confidence 45677789999999999999888764 33 48999999999999999999999988766421 221
Q ss_pred cCccccc-chhHHHHHHHHHHHHHHhhhcc--CCCccCCCC---------CCCCCCCCcCCCCCCCCCCCCCCCCCCCcc
Q 023799 134 TGIPIYE-AEPLLLFFILFTLLGAIGALGD--RGKFVDEPD---------EPTGLGGAVIPPGKGLRSALGLKEGGPIFG 201 (277)
Q Consensus 134 ~G~p~~~-~~pl~l~~i~~~llgai~~~~~--~~~~~~~~~---------~p~g~~~~~~~PGd~~~dPlGL~~~~~~~~ 201 (277)
.|...+. ...-.++++++.+++++|.... ..+-..... .+.+. ...||||.+|||+||++++++++
T Consensus 121 ag~~~~~~~~~~~~~~~q~~~mG~~E~~R~~~~~~pg~~~~~g~~~g~~~~~~~~--~~~yPGd~~FDPlGl~~d~~~~~ 198 (252)
T PLN00147 121 AGAVKFEFASTRTLFVVQLLLMGFAETKRYMDFVSPGSQAKEGSFFGLEAALEGL--EPGYPGGPLFNPLGLAKDIENAH 198 (252)
T ss_pred cccchhccccchHHHHHHHHHHHHHHHHhhccccCCCcccccccccccccccccc--CCCCcccccCCccccCCCHHHHH
Confidence 2211110 1111223344567788775321 000000000 00111 12489998899999998888888
Q ss_pred ccchhhhhhhhhHHHHHHHHHHHHHhcCcChHHHhHHhhCCCcc
Q 023799 202 FTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN 245 (277)
Q Consensus 202 ~~k~kELkNGRLAMlg~~G~ivqE~vTGkg~l~~l~~~~g~p~~ 245 (277)
++|+||||||||||+|++|+++|+++||+||+++|..|+.||++
T Consensus 199 ~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hladP~~ 242 (252)
T PLN00147 199 DWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWH 242 (252)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCccc
Confidence 99999999999999999999999999999999999999999985
No 4
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.98 E-value=1.6e-32 Score=252.82 Aligned_cols=176 Identities=24% Similarity=0.278 Sum_probs=125.3
Q ss_pred ccCCCCCCCCCCCCCCCcCCCCCCC---C---------ccchhhhhhhHHHHHHHHHHHHhhhhhccchhhhhc-cccCc
Q 023799 70 SKTKAPPKTKKPKVEDGIFGTSGGF---G---------FTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLN-LETGI 136 (277)
Q Consensus 70 ~ks~a~p~~~~p~~~dg~~~~~~~f---G---------f~r~aEl~nGR~AMLG~~g~lv~E~~tg~g~~~q~~-~~~G~ 136 (277)
.+....|....|+++||.+.+|.+| | |+|++||+||||||||++|++++|++++.+++.... ...|.
T Consensus 61 ~r~~w~Pg~~~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~~~w~~Ag~ 140 (267)
T PLN00098 61 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGA 140 (267)
T ss_pred CccccCCCCCCCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcccccccccccc
Confidence 3445677778999999999877653 2 358999999999999999999999998877654221 12232
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhccCCCc----cCCCC-CC--CCCCCCcCCCCCCCCCCCCCCC-CCCCccccchhhh
Q 023799 137 PIYEAEPLLLFFILFTLLGAIGALGDRGKF----VDEPD-EP--TGLGGAVIPPGKGLRSALGLKE-GGPIFGFTKSNEL 208 (277)
Q Consensus 137 p~~~~~pl~l~~i~~~llgai~~~~~~~~~----~~~~~-~p--~g~~~~~~~PGd~~~dPlGL~~-~~~~~~~~k~kEL 208 (277)
..+...+..++++.+.+++++|........ .+... .+ ...+.+..||||.+|||+|+.+ ++++++++|.+||
T Consensus 141 ~~~~~~~~~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~~~~~~~~~~d~~yPGg~~FDPlgl~~~d~~~~~~~k~kEi 220 (267)
T PLN00098 141 REYFADPTTLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEI 220 (267)
T ss_pred hhhccCchHHHHHHHHHHHHHHHHHhhcccCCccccccccccccccCCCCCCCCCCccCCcccCCCCCHHHHHHHHHHHH
Confidence 222222333344556678888753211100 00000 00 0011234699997799999964 6667888999999
Q ss_pred hhhhhHHHHHHHHHHHHHhcCcChHHHhHHhhCCCcc
Q 023799 209 FVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN 245 (277)
Q Consensus 209 kNGRLAMlg~~G~ivqE~vTGkg~l~~l~~~~g~p~~ 245 (277)
|||||||+|++|+++|+.+||+||++||..|+.||.+
T Consensus 221 kNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hladP~~ 257 (267)
T PLN00098 221 KNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGH 257 (267)
T ss_pred hhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhcCccc
Confidence 9999999999999999999999999999999999975
No 5
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.98 E-value=1.5e-32 Score=250.18 Aligned_cols=176 Identities=23% Similarity=0.242 Sum_probs=123.3
Q ss_pred ccCCCCCCCCCCCCCCCcCCCCCCC---C---------ccchhhhhhhHHHHHHHHHHHHhhhhhccchhhhhccccCcc
Q 023799 70 SKTKAPPKTKKPKVEDGIFGTSGGF---G---------FTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIP 137 (277)
Q Consensus 70 ~ks~a~p~~~~p~~~dg~~~~~~~f---G---------f~r~aEl~nGR~AMLG~~g~lv~E~~tg~g~~~q~~~~~G~p 137 (277)
++....|+...|+++||.+.+|.+| | |+|++||+||||||||++|++++|+++.++.++ .|..
T Consensus 34 ~r~~W~P~~~~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~~P~w~~-----ag~~ 108 (246)
T PLN00100 34 ARPMWYPGATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVGLPKFWE-----AGAE 108 (246)
T ss_pred CCcccCCCCCCCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhcccchhh-----cchh
Confidence 5566788889999999999887653 2 458999999999999999999999976544322 1222
Q ss_pred cccchhHHHHHHHHHHHHHHhhhccCCCccCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccchhhhhhhhhHHHH
Q 023799 138 IYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLG 217 (277)
Q Consensus 138 ~~~~~pl~l~~i~~~llgai~~~~~~~~~~~~~~~p~g~~~~~~~PGd~~~dPlGL~~~~~~~~~~k~kELkNGRLAMlg 217 (277)
.+......++++.+.+++++|... +.+.. +.+ ....||+..|||+|+++ +.+|+||||||||||+|
T Consensus 109 ~~~~~~~~l~~iqill~g~~E~~r----~~~~~--~~g---~~~~pg~~~FDPLGl~~-----~~~K~KEIkNGRLAMlA 174 (246)
T PLN00100 109 KYGLDLQTLVLIQVVVMAVLEAAR----YRGFM--KTG---ESGVLSFFPFDPTGMDS-----PEMKVKEVKNGRLAMLA 174 (246)
T ss_pred hhccchhHHHHHHHHHHHHHhhhc----ccccc--ccc---ccCCCCCCCCCcccccH-----HHHHHHHHhhhhHHHHH
Confidence 221111223334445677776431 11111 111 11257887789999963 36899999999999999
Q ss_pred HHHHHHHHHhcCcChHHHhHHhhCCCcc------chhhHHHHHHHHHHHHhcC
Q 023799 218 IAFSLIGEIITGKGALAQLNIETGIPIN------EIEPLVLFNVIFFFVAALN 264 (277)
Q Consensus 218 ~~G~ivqE~vTGkg~l~~l~~~~g~p~~------~~~~~~~~~~~~~~~~~~~ 264 (277)
|+|+++|+.+||+||+++|..|+.+|++ ...+..+..+++.+.+++.
T Consensus 175 ~lG~~~Q~~vTG~gPlenL~~hladP~~~ni~~~~~~~~~~~~~~~~~~~~~~ 227 (246)
T PLN00100 175 FLGMVSQYAVTGKSPLEGLKAHMANPGHVNIFTSSVGPETVATVAFLSVAPTI 227 (246)
T ss_pred HHHHhhhhhhcCCChHHHHHHhccCCcccccccCCCCCccchhHHhhccchHH
Confidence 9999999999999999999999999963 3334444555555555443
No 6
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.97 E-value=3.1e-32 Score=248.05 Aligned_cols=173 Identities=23% Similarity=0.203 Sum_probs=125.4
Q ss_pred ccCCCCCCCCCCCCCCCcCCCCCCC---C---------ccchhhhhhhHHHHHHHHHHHHhhhhhccchh---hhhcccc
Q 023799 70 SKTKAPPKTKKPKVEDGIFGTSGGF---G---------FTKQNELFVGRVAMIGFAASLLGEGITGKGIL---AQLNLET 134 (277)
Q Consensus 70 ~ks~a~p~~~~p~~~dg~~~~~~~f---G---------f~r~aEl~nGR~AMLG~~g~lv~E~~tg~g~~---~q~~~~~ 134 (277)
.+....|....|+++||.+.+|.+| | |+|++||+||||||||++|++++|++++.++. .|+. +
T Consensus 43 ~R~~w~Pg~~~P~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~~~p~W~~--A 120 (244)
T PLN00097 43 DRPTWLPGKAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMADLPNWID--A 120 (244)
T ss_pred CCcccCCCCCCccccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCcccCCcccc--C
Confidence 4555677778999999999888664 2 35899999999999999999999999987653 2222 2
Q ss_pred Cccc-ccchhHHHHHHHHHHHHHHhhhccCCCcc--CCCCCC------CCCCCCcCCCCCCCCCCCCCCCCCCCccccch
Q 023799 135 GIPI-YEAEPLLLFFILFTLLGAIGALGDRGKFV--DEPDEP------TGLGGAVIPPGKGLRSALGLKEGGPIFGFTKS 205 (277)
Q Consensus 135 G~p~-~~~~pl~l~~i~~~llgai~~~~~~~~~~--~~~~~p------~g~~~~~~~PGd~~~dPlGL~~~~~~~~~~k~ 205 (277)
|... +......++++.+.+++++|......... +...+| ...+++..|||+ .|||+|+.+++++++++|.
T Consensus 121 g~~~~~~~~~~~l~~i~~~lmg~~E~~r~~~~~~pg~~~~~p~~~~~~~~~~~d~gYPgg-~FDPlgl~~d~~~~~~lk~ 199 (244)
T PLN00097 121 AKWDGYWAGAGPLFFIQMAMFNWAEIRRWQDMKAPGSMNEDPLFGANKGDTNTDVGYPKG-LFDKFGWAKDEKKAAELKL 199 (244)
T ss_pred CcchhccccchhHHHHHHHHHHHHHHHHhhcccCCCccccccccccccCCcccccCCCCC-CCCccccCCCHHHHHHHHH
Confidence 2211 11122234556666778877532111100 000001 111234458987 5899999988888889999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhcCcChHHHhHHhhCCCcc
Q 023799 206 NELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN 245 (277)
Q Consensus 206 kELkNGRLAMlg~~G~ivqE~vTGkg~l~~l~~~~g~p~~ 245 (277)
+|||||||||+|++|+++|+++||+||++||..|+.||.+
T Consensus 200 kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~HladP~~ 239 (244)
T PLN00097 200 KEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGH 239 (244)
T ss_pred HHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHhcCccc
Confidence 9999999999999999999999999999999999999975
No 7
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.97 E-value=6.6e-32 Score=248.48 Aligned_cols=172 Identities=26% Similarity=0.333 Sum_probs=124.3
Q ss_pred CCCCCCCCCCCCCcCCCCCCC---Ccc--------------chhhhhhhHHHHHHHHHHHHhhhhhccchhhhhc----c
Q 023799 74 APPKTKKPKVEDGIFGTSGGF---GFT--------------KQNELFVGRVAMIGFAASLLGEGITGKGILAQLN----L 132 (277)
Q Consensus 74 a~p~~~~p~~~dg~~~~~~~f---Gf~--------------r~aEl~nGR~AMLG~~g~lv~E~~tg~g~~~q~~----~ 132 (277)
..|....|+++||.+.+|.+| |+. |++||+||||||||++|++++|++++.+++.+.. .
T Consensus 45 w~p~~~~P~yLdG~lPGD~GFDPlGL~~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~~~~~~~w~ 124 (262)
T PLN00048 45 WFASKQSLSYLDGTLPGDFGFDPLGLSDPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALPWF 124 (262)
T ss_pred ecCCCCCccccCCCCCCccCCCccccCCccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhccCCccccccccccc
Confidence 345667899999999888774 332 6789999999999999999999998777653211 1
Q ss_pred ccCc------ccccchhHHHHHHHHHHHHHHhhhccCCCccCCC--C-CCCC------CCCCcCCCCCCCCCCCCCCCCC
Q 023799 133 ETGI------PIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEP--D-EPTG------LGGAVIPPGKGLRSALGLKEGG 197 (277)
Q Consensus 133 ~~G~------p~~~~~pl~l~~i~~~llgai~~~~~~~~~~~~~--~-~p~g------~~~~~~~PGd~~~dPlGL~~~~ 197 (277)
..|. ..|...+..++++.+.+++++|..........+. . ...+ ..+...||||.+|||+|+.+++
T Consensus 125 ~ag~~~~~~~~~y~~~p~~l~~~~~~lmg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~~~~d~~yPG~~~fDPlGl~~~~ 204 (262)
T PLN00048 125 QSGVIPPAGTYDYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLEKGLGGSGNPAYPGGPFFNPLGFGKDE 204 (262)
T ss_pred cccccccccccccccchhHHHHHHHHHhhheeeeccccccCCCcccccccccchhccccccccccccccccCccccccch
Confidence 1121 1122234445566677788887431111000000 0 0000 0113469999779999999888
Q ss_pred CCccccchhhhhhhhhHHHHHHHHHHHHHhcCcChHHHhHHhhCCCcc
Q 023799 198 PIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN 245 (277)
Q Consensus 198 ~~~~~~k~kELkNGRLAMlg~~G~ivqE~vTGkg~l~~l~~~~g~p~~ 245 (277)
++++++|.+||+||||||+|++|+++|+++||+||++||..|+.||++
T Consensus 205 e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~hladP~~ 252 (262)
T PLN00048 205 KSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVN 252 (262)
T ss_pred HHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHHhcCccc
Confidence 888899999999999999999999999999999999999999999975
No 8
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.97 E-value=3.1e-31 Score=243.79 Aligned_cols=162 Identities=27% Similarity=0.382 Sum_probs=116.1
Q ss_pred CCC-CCCCCCCCcCCCCCCC---C---------ccchhhhhhhHHHHHHHHHHHHhhhhhccchh----hhhccc-----
Q 023799 76 PKT-KKPKVEDGIFGTSGGF---G---------FTKQNELFVGRVAMIGFAASLLGEGITGKGIL----AQLNLE----- 133 (277)
Q Consensus 76 p~~-~~p~~~dg~~~~~~~f---G---------f~r~aEl~nGR~AMLG~~g~lv~E~~tg~g~~----~q~~~~----- 133 (277)
|+. ..|+++||.+.+|.+| | |+|++||+||||||||++|++++|++++.++. .|+...
T Consensus 57 p~~~~~P~~Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g~~~~~~~W~~ag~~~~~ 136 (262)
T PLN00025 57 PFSGETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFS 136 (262)
T ss_pred CcccCCcccccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCCcCcCccccccccccccc
Confidence 444 5678899999877663 2 34899999999999999999999998865541 121110
Q ss_pred -c-----Ccc-cccchh-HHHHHHHHHHHHHHhhhccCCCccCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccch
Q 023799 134 -T-----GIP-IYEAEP-LLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKS 205 (277)
Q Consensus 134 -~-----G~p-~~~~~p-l~l~~i~~~llgai~~~~~~~~~~~~~~~p~g~~~~~~~PGd~~~dPlGL~~~~~~~~~~k~ 205 (277)
. +.+ ...... ..++++.+.+++++|.+.. .+. +.+...+..||||. |||+|+.++++++.++|.
T Consensus 137 ~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg~~E~~r~----~~~---~~~~~~d~~yPG~~-FDPlGl~~d~~~~~~~k~ 208 (262)
T PLN00025 137 EGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV----NGG---PLGEGLDPLYPGGS-FDPLGLADDPDTFAELKV 208 (262)
T ss_pred ccccccccCcccchhhhHHHHHHHHHHHHHHHHHhcc----cCC---cccccccCcCCccc-CCccccCCCHHHHHHHHH
Confidence 0 111 001111 1223445566788875321 110 11111223699995 999999888888889999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhcCcChHHHhHHhhCCCcc
Q 023799 206 NELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN 245 (277)
Q Consensus 206 kELkNGRLAMlg~~G~ivqE~vTGkg~l~~l~~~~g~p~~ 245 (277)
+|||||||||+|++|+++|+++||+||++||..|++||++
T Consensus 209 kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hladP~~ 248 (262)
T PLN00025 209 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVA 248 (262)
T ss_pred HHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhcCccc
Confidence 9999999999999999999999999999999999999986
No 9
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.97 E-value=6.4e-31 Score=244.02 Aligned_cols=161 Identities=25% Similarity=0.272 Sum_probs=119.2
Q ss_pred CCCCCCCCCCCCCCcCCCCCCC---C----------------------------------------------------cc
Q 023799 73 KAPPKTKKPKVEDGIFGTSGGF---G----------------------------------------------------FT 97 (277)
Q Consensus 73 ~a~p~~~~p~~~dg~~~~~~~f---G----------------------------------------------------f~ 97 (277)
...|....|+++||.+.+|.|| | |+
T Consensus 54 ~w~p~~~~P~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l~r~ 133 (286)
T PLN00187 54 LWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRF 133 (286)
T ss_pred ccCCCCCCcccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHHHHH
Confidence 4566668899999999988774 2 34
Q ss_pred chhhhhhhHHHHHHHHHHHHhhhhhccchhhhhccc---cCcccccchh-----HHHHHHHHHHHHHHhhhccCCCccCC
Q 023799 98 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLE---TGIPIYEAEP-----LLLFFILFTLLGAIGALGDRGKFVDE 169 (277)
Q Consensus 98 r~aEl~nGR~AMLG~~g~lv~E~~tg~g~~~q~~~~---~G~p~~~~~p-----l~l~~i~~~llgai~~~~~~~~~~~~ 169 (277)
|++||+||||||||++|++++|+++|.. |...+.. .+. .+...+ ..++++.+.+++++|.+.. .+.
T Consensus 134 REaELiHGRwAMLAvaG~lvpEll~G~~-W~~aG~~~~~~g~-~y~g~~~p~~~~~l~~iqvllmG~~E~~R~----~~~ 207 (286)
T PLN00187 134 RECELIHGRWAMLATLGALSVEALTGVT-WQDAGKVELVDGS-SYLGQPLPFSITTLIWIEVLVIGYIEFQRN----AEL 207 (286)
T ss_pred HHHHhhhhHHHHHHhhchhhHHhccCCc-ccccccccccccc-cccccccchhHHHHHHHHHHHHHHHHhhhc----cCC
Confidence 8999999999999999999999987642 2211110 111 111111 1234455667888775321 110
Q ss_pred CCCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccchhhhhhhhhHHHHHHHHHHHHHhcCcChHHHhHHhhCCCcc
Q 023799 170 PDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN 245 (277)
Q Consensus 170 ~~~p~g~~~~~~~PGd~~~dPlGL~~~~~~~~~~k~kELkNGRLAMlg~~G~ivqE~vTGkg~l~~l~~~~g~p~~ 245 (277)
. .....+||+.+|||+|+.++++++.++|.+||+||||||+|++|+++|+.+||+||++||..|+.+|++
T Consensus 208 ~------~~~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~Hladp~~ 277 (286)
T PLN00187 208 D------PEKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLH 277 (286)
T ss_pred C------CCCCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCccc
Confidence 0 012358999778999998887788899999999999999999999999999999999999999999975
No 10
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.96 E-value=1.3e-29 Score=238.06 Aligned_cols=167 Identities=22% Similarity=0.195 Sum_probs=112.2
Q ss_pred CCCCCCCCcCCCCCCC---C---------ccchhhhhhhHHHHHHHHHHHHhhhhhccchhhh-----hccc----c---
Q 023799 79 KKPKVEDGIFGTSGGF---G---------FTKQNELFVGRVAMIGFAASLLGEGITGKGILAQ-----LNLE----T--- 134 (277)
Q Consensus 79 ~~p~~~dg~~~~~~~f---G---------f~r~aEl~nGR~AMLG~~g~lv~E~~tg~g~~~q-----~~~~----~--- 134 (277)
..|+++||.+.+|.|| | |+|++||+||||||||++|++++|+++..+.... +... .
T Consensus 118 ~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~~~~~~p~W~~aG~~~~~g~~ 197 (324)
T PLN00171 118 DYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGAVHFAEPVWWRVGYAKLQGDT 197 (324)
T ss_pred CCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCccccCccchhhcccccccccc
Confidence 5788999999888774 2 4589999999999999999999999876553211 1100 0
Q ss_pred ----Ccccc--c-chhH-HHHHHHHHHHHHHhhhccCCCccCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccchh
Q 023799 135 ----GIPIY--E-AEPL-LLFFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSN 206 (277)
Q Consensus 135 ----G~p~~--~-~~pl-~l~~i~~~llgai~~~~~~~~~~~~~~~p~g~~~~~~~PGd~~~dPlGL~~~~~~~~~~k~k 206 (277)
+.+.. . ...+ .++++.+.+++.+|.... ..+...+......+++..|||+..|||+|++++++++.++|.+
T Consensus 198 ~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~-~~~~~~~~~g~~~PGD~gYPGG~~FDPLGl~~d~~~~~~~k~k 276 (324)
T PLN00171 198 LDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARY-CGIEALEPLGIYLPGDINYPGGALFDPLGLSKDPVAFEDLKVK 276 (324)
T ss_pred hhhccCCccccchhHHHHHHHHHHHHHhhhhhheee-ccccccCCccccCCCcccCCcccCCCccccCCCHHHHHHHHHH
Confidence 11100 0 0000 112223333333332111 1111000000112334457887668999998888888899999
Q ss_pred hhhhhhhHHHHHHHHHHHHHhcCcChHHHhHHhhCCCccc
Q 023799 207 ELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINE 246 (277)
Q Consensus 207 ELkNGRLAMlg~~G~ivqE~vTGkg~l~~l~~~~g~p~~~ 246 (277)
|||||||||+|++|+++|+.+||+||+++|..|+.||++.
T Consensus 277 ELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hladP~~~ 316 (324)
T PLN00171 277 EIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHN 316 (324)
T ss_pred HHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHhcCcccc
Confidence 9999999999999999999999999999999999999863
No 11
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.96 E-value=1.2e-29 Score=227.09 Aligned_cols=179 Identities=21% Similarity=0.125 Sum_probs=111.6
Q ss_pred hhhhhhhccCCc-chhhhh-hhhcccCCCCCCCCCCCCCCCcCCCCCC-------------CCccchhhhhhhHHHHHHH
Q 023799 48 ESLTAAAASSSS-KAFSTV-ALFKSKTKAPPKTKKPKVEDGIFGTSGG-------------FGFTKQNELFVGRVAMIGF 112 (277)
Q Consensus 48 ~~~~~~~~~~~~-~~~~~~-a~~~~ks~a~p~~~~p~~~dg~~~~~~~-------------fGf~r~aEl~nGR~AMLG~ 112 (277)
+.+||+|++..+ |+.... .-+...+.+.|+.++|+.+||. .++.+ +.|+|++||+|||+||||+
T Consensus 12 saaAFAPa~~~~~~~s~~~~~~~~~~~g~~pf~~~~p~l~g~-~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~ 90 (209)
T PLN00089 12 SAAAAAPAQKSRTRPATPTAAAEDDCPGAIGFAAKEFMFIGK-TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAV 90 (209)
T ss_pred HhhccCCcccccchhhhhhhhhhhhcccccccccCCccccCC-CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHH
Confidence 456687665322 221111 1123445677888888877766 23322 2355899999999999999
Q ss_pred HHHHHhhhhhccchhhhhcc-ccCcccccchhHHH-HHHHHHHHHHHhhhccCCCccCCCCCCCCCCCCcCCCCCCCCCC
Q 023799 113 AASLLGEGITGKGILAQLNL-ETGIPIYEAEPLLL-FFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSA 190 (277)
Q Consensus 113 ~g~lv~E~~tg~g~~~q~~~-~~G~p~~~~~pl~l-~~i~~~llgai~~~~~~~~~~~~~~~p~g~~~~~~~PGd~~~dP 190 (277)
+|++++|.++.+|...++.. ..+.......+... ..+++.+++++|.......... . .....+|||..|||
T Consensus 91 ~G~~~~~~~~~pG~~~~~~~~p~~~~a~~~~~~~g~~~Qi~~~ig~~E~~~~~~~~~~-~------~~~~~~PGd~gfdp 163 (209)
T PLN00089 91 AGFIAPDFVRIPGEAYSFAAIPKTIDAHDALLKSGAMIQIFAWIGFVDLAVSAPAAAA-A------AEFDRTPGDFGFDL 163 (209)
T ss_pred HHHHHHHHHcCCCccccccccccHHHHHHhhcccccHHHHHHHHHHHHHHHhhccccc-c------ccCCCCCCCcCccc
Confidence 99999999887664321111 11111111111111 2344556777763211000000 0 01124799987899
Q ss_pred CCC-CCCCCCccccchhhhhhhhhHHHHHHHHHHHHHhcCcChHH
Q 023799 191 LGL-KEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALA 234 (277)
Q Consensus 191 lGL-~~~~~~~~~~k~kELkNGRLAMlg~~G~ivqE~vTGkg~l~ 234 (277)
+|+ ++++++++++|.+||+||||||+|++|+++||.+||+|+++
T Consensus 164 lgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~~ 208 (209)
T PLN00089 164 LALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFPY 208 (209)
T ss_pred cccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCCc
Confidence 999 45677778899999999999999999999999999998753
No 12
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.95 E-value=1.3e-27 Score=203.27 Aligned_cols=140 Identities=30% Similarity=0.304 Sum_probs=92.6
Q ss_pred CCCCCCCcCCCCCCC-----------CccchhhhhhhHHHHHHHHHHHHhhhhhccch----hhhhccc-cCcccccchh
Q 023799 80 KPKVEDGIFGTSGGF-----------GFTKQNELFVGRVAMIGFAASLLGEGITGKGI----LAQLNLE-TGIPIYEAEP 143 (277)
Q Consensus 80 ~p~~~dg~~~~~~~f-----------Gf~r~aEl~nGR~AMLG~~g~lv~E~~tg~g~----~~q~~~~-~G~p~~~~~p 143 (277)
.|+++||.+.++.+| .|+|++|+||||+||||++|++++|++++.+. ..+.... .+. + . .+
T Consensus 1 ~p~~l~G~~~~~~gfDPlgl~~~~~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~-~-~-~~ 77 (156)
T PF00504_consen 1 PPPYLDGSVPGDYGFDPLGLSSDPDFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGG-I-P-VP 77 (156)
T ss_dssp --TTTTSTSTTSTSSSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTS-S-S-SH
T ss_pred CcccccCCCCCCCCCChhhcccchhHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhh-h-h-hh
Confidence 367788866556553 36799999999999999999999999877432 1221110 110 0 0 22
Q ss_pred HHHHHHHHHHHHHHhhhccCCCccCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccchhhhhhhhhHHHHHHHHHH
Q 023799 144 LLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLI 223 (277)
Q Consensus 144 l~l~~i~~~llgai~~~~~~~~~~~~~~~p~g~~~~~~~PGd~~~dPlGL~~~~~~~~~~k~kELkNGRLAMlg~~G~iv 223 (277)
....++++.++++++.+.......... .......+|||..+||+|+.++++.++++|.+||+|||||||||+|+++
T Consensus 78 ~~~~~~~l~~ig~~e~~~~~~~~~~~~----~~~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlAMla~~g~~~ 153 (156)
T PF00504_consen 78 AAGWAQILLFIGALEPWRQQGVPEPGE----GGGKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLAMLAFAGFVA 153 (156)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTTCCT----TSSSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHhhhhhcccccCCcc----cccccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223335566677777543221111100 0012235899988999999877778889999999999999999999999
Q ss_pred HHH
Q 023799 224 GEI 226 (277)
Q Consensus 224 qE~ 226 (277)
||.
T Consensus 154 ~e~ 156 (156)
T PF00504_consen 154 QEA 156 (156)
T ss_dssp HH-
T ss_pred hcC
Confidence 984
No 13
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.94 E-value=9e-28 Score=219.98 Aligned_cols=155 Identities=23% Similarity=0.214 Sum_probs=106.1
Q ss_pred CCCCCCCcCCCCCCC------------CccchhhhhhhHHHHHHHHHHHHhhhhhccchhhhhccccCcccccchhHHHH
Q 023799 80 KPKVEDGIFGTSGGF------------GFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLF 147 (277)
Q Consensus 80 ~p~~~dg~~~~~~~f------------Gf~r~aEl~nGR~AMLG~~g~lv~E~~tg~g~~~q~~~~~G~p~~~~~pl~l~ 147 (277)
.|.++||.+.++.+| .++|++||+||||||||++|++++|++++..+++. +...+ .+.......++
T Consensus 66 ~P~~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w~~a-G~~~~-~~~p~~~~~l~ 143 (255)
T PLN00170 66 DPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEA-GADPG-AIAPFSFGSLL 143 (255)
T ss_pred CcccccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccCCChhhC-Ccccc-ccCccchHHHH
Confidence 688999998877553 23589999999999999999999999987653321 11100 00111112344
Q ss_pred HHHHHHHHHHhhhccCCCccC--CCCCC-----------CCCCCCcCCCCCCCCCCCCCCC---------CCCCccccch
Q 023799 148 FILFTLLGAIGALGDRGKFVD--EPDEP-----------TGLGGAVIPPGKGLRSALGLKE---------GGPIFGFTKS 205 (277)
Q Consensus 148 ~i~~~llgai~~~~~~~~~~~--~~~~p-----------~g~~~~~~~PGd~~~dPlGL~~---------~~~~~~~~k~ 205 (277)
.+.+.+++++|.....+.... ...++ ....+...|||+.+|||+||.+ |+++++++|.
T Consensus 144 ~~q~~lmg~~E~~R~~~~~~P~~~~~~~~~p~~~~~~~f~~~~g~~~yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~ 223 (255)
T PLN00170 144 GTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANATGLQGYPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKL 223 (255)
T ss_pred HHHHHHhhhhhheeeccccCCcccccccccccccccccccccCCCcccCCCcccCccccccccccccccCCHHHHHHHHH
Confidence 566778888875321111100 00011 0012334589987899999974 4557788999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhcCcChHHHhH
Q 023799 206 NELFVGRLAQLGIAFSLIGEIITGKGALAQLN 237 (277)
Q Consensus 206 kELkNGRLAMlg~~G~ivqE~vTGkg~l~~l~ 237 (277)
+|||||||||+|++|+++|+ .||+|||++|+
T Consensus 224 kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~ 254 (255)
T PLN00170 224 AEIKHARLAMVAMLIFYFEA-GQGKTPLGALG 254 (255)
T ss_pred HHHhhhHHHHHHHHhHheee-ccCCCchhhhc
Confidence 99999999999999999999 79999999986
No 14
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.89 E-value=5.9e-24 Score=189.60 Aligned_cols=129 Identities=21% Similarity=0.205 Sum_probs=81.0
Q ss_pred CCCccchhhhhhhHHHHHHHHHHHHhhh-hhccchhhhhcc-----ccCcccccchhHHHHHHHHHHHHHHhhhccCCCc
Q 023799 93 GFGFTKQNELFVGRVAMIGFAASLLGEG-ITGKGILAQLNL-----ETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKF 166 (277)
Q Consensus 93 ~fGf~r~aEl~nGR~AMLG~~g~lv~E~-~tg~g~~~q~~~-----~~G~p~~~~~pl~l~~i~~~llgai~~~~~~~~~ 166 (277)
.+.|+|++||+|||+||+|++|++++|. ++.++.....+. ..+.......+...+++++.+++++|.+...
T Consensus 60 ~~~~~r~~ElkhGRlAMlA~~G~~~~~~g~~~Pg~~~~~g~~~~~~p~~~~a~~~vp~~g~~qi~~~ig~~E~~~~~--- 136 (202)
T PLN00120 60 KFDRLRYVEIKHGRISMLAVVGYLVTEAGIRLPGDIDYSGTSFSDIPNGFAALDAIPTAGLLQILAFIGFLELAVMK--- 136 (202)
T ss_pred HHHHHHHHHhhcccHHHHhhccceeecccccCCCccccccccccccccchhhhhhcchhHHHHHHHHHHHHHHHhhc---
Confidence 4778899999999999999999999996 444443321111 0111111122222234556667777643211
Q ss_pred cCCCCCCCCCCCCcCCCCCCCCC--CCCCCC-CCCCccccchhhhhhhhhHHHHHHHHHHHHHhcCcCh
Q 023799 167 VDEPDEPTGLGGAVIPPGKGLRS--ALGLKE-GGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGA 232 (277)
Q Consensus 167 ~~~~~~p~g~~~~~~~PGd~~~d--PlGL~~-~~~~~~~~k~kELkNGRLAMlg~~G~ivqE~vTGkg~ 232 (277)
+ +.+ ...+|||.-.+ ++|++. ++++.+++|++||+||||||||++|+++||.++|.-+
T Consensus 137 -~----~~~---~~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~g~~~ 197 (202)
T PLN00120 137 -D----ITG---EGEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMVHEQLGVELP 197 (202)
T ss_pred -c----ccc---CCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc
Confidence 1 111 11357752111 355543 4556667899999999999999999999999999754
No 15
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=99.51 E-value=1.3e-14 Score=126.12 Aligned_cols=55 Identities=45% Similarity=0.702 Sum_probs=50.5
Q ss_pred CccccchhhhhhhhhHHHHHHHHHHHHHhc-CcChHHHhHHhhCCCccchhhHHHH
Q 023799 199 IFGFTKSNELFVGRLAQLGIAFSLIGEIIT-GKGALAQLNIETGIPINEIEPLVLF 253 (277)
Q Consensus 199 ~~~~~k~kELkNGRLAMlg~~G~ivqE~vT-Gkg~l~~l~~~~g~p~~~~~~~~~~ 253 (277)
..++.|.+|++||||||+||+..++.|++| |+|+++|++.++|.|+.|+|++++|
T Consensus 131 ~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvPi~e~E~f~~f 186 (214)
T PLN00084 131 QVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPVIDEELFAAF 186 (214)
T ss_pred HHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccccCCcchhhHHHHHH
Confidence 344688999999999999999999999999 9999999999999999999987654
No 16
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.39 E-value=3.5e-13 Score=124.93 Aligned_cols=69 Identities=26% Similarity=0.315 Sum_probs=56.4
Q ss_pred CccCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccchhhhhhhhhHHHHHHHHHHHHHhcCcChHHH
Q 023799 165 KFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQ 235 (277)
Q Consensus 165 ~~~~~~~~p~g~~~~~~~PGd~~~dPlGL~~~~~~~~~~k~kELkNGRLAMlg~~G~ivqE~vTGkg~l~~ 235 (277)
.|..+.+.|...++. .|||..|||+|++++++.+++++.+||+|||+||+|++|+++||++++.|+++.
T Consensus 64 ~w~Pg~~~P~~LdG~--~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~ 132 (267)
T PLN00098 64 LWFPGSSPPEWLDGS--LPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIEN 132 (267)
T ss_pred ccCCCCCCCccCCCC--CCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcccc
Confidence 344443345555543 699988999999988888899999999999999999999999999998877653
No 17
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.36 E-value=5.7e-13 Score=122.48 Aligned_cols=59 Identities=36% Similarity=0.447 Sum_probs=51.9
Q ss_pred CCCCCCCcCCCCCCCCCCCCCCCCCCCccccchhhhhhhhhHHHHHHHHHHHHHhcCcChH
Q 023799 173 PTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL 233 (277)
Q Consensus 173 p~g~~~~~~~PGd~~~dPlGL~~~~~~~~~~k~kELkNGRLAMlg~~G~ivqE~vTGkg~l 233 (277)
|...++ .+|||..|||+||+++++++++++.+||+|||+||+|++|+++||++|++|++
T Consensus 63 P~~LdG--~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 63 PGYLNG--SLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred CcccCC--CCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 444443 36999989999999888888999999999999999999999999999998876
No 18
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.26 E-value=4.1e-12 Score=116.49 Aligned_cols=67 Identities=22% Similarity=0.244 Sum_probs=54.9
Q ss_pred CCccCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccchhhhhhhhhHHHHHHHHHHHHHhcCcCh
Q 023799 164 GKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGA 232 (277)
Q Consensus 164 ~~~~~~~~~p~g~~~~~~~PGd~~~dPlGL~~~~~~~~~~k~kELkNGRLAMlg~~G~ivqE~vTGkg~ 232 (277)
..|....+.|...++ ..|||..|||+||+++++.+++++.+||+|||+||+|++|+++||++++.+.
T Consensus 45 ~~w~Pg~~~P~~LdG--~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~ 111 (244)
T PLN00097 45 PTWLPGKAAAAHLDG--SLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGM 111 (244)
T ss_pred cccCCCCCCccccCC--CCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence 344444334555444 3799999999999988888999999999999999999999999999998765
No 19
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.26 E-value=2.7e-12 Score=118.24 Aligned_cols=65 Identities=26% Similarity=0.320 Sum_probs=52.5
Q ss_pred ccCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccchhhhhhhhhHHHHHHHHHHHHHhcCcCh
Q 023799 166 FVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGA 232 (277)
Q Consensus 166 ~~~~~~~p~g~~~~~~~PGd~~~dPlGL~~~~~~~~~~k~kELkNGRLAMlg~~G~ivqE~vTGkg~ 232 (277)
+.+..+.|...++ .+|||..|||+|++++++++++++.+||+|||+||+|++|+++||+++..|+
T Consensus 48 wlP~~~~P~~Ldg--~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~ 112 (252)
T PLN00147 48 WLPGLDPPPHLDG--TLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGI 112 (252)
T ss_pred cCCCCCCCCcCCC--CCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCC
Confidence 4433333444444 3799988999999887778889999999999999999999999999987653
No 20
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.24 E-value=7.6e-12 Score=115.31 Aligned_cols=54 Identities=22% Similarity=0.293 Sum_probs=49.1
Q ss_pred CCCCCCCCCCCCCCCCCCCccccchhhhhhhhhHHHHHHHHHHHHHhcCcChHH
Q 023799 181 IPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALA 234 (277)
Q Consensus 181 ~~PGd~~~dPlGL~~~~~~~~~~k~kELkNGRLAMlg~~G~ivqE~vTGkg~l~ 234 (277)
.+|||..|||+||.++++.+++++.+||+|||+||+|++|+++||+++|...++
T Consensus 73 ~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w~~ 126 (255)
T PLN00170 73 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 126 (255)
T ss_pred cCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccCCChhh
Confidence 379998899999998888899999999999999999999999999999876544
No 21
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.17 E-value=2.3e-11 Score=113.78 Aligned_cols=57 Identities=28% Similarity=0.257 Sum_probs=48.0
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCCCCCCC-------------------------------------------ccccchhhh
Q 023799 172 EPTGLGGAVIPPGKGLRSALGLKEGGPI-------------------------------------------FGFTKSNEL 208 (277)
Q Consensus 172 ~p~g~~~~~~~PGd~~~dPlGL~~~~~~-------------------------------------------~~~~k~kEL 208 (277)
.|.+.++. .|||++|||+||+++++. +++++.+||
T Consensus 61 ~P~~LdGs--lpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l~r~REaEL 138 (286)
T PLN00187 61 APEWLDGS--LVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECEL 138 (286)
T ss_pred CcccccCC--CCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHHHHHHHHHh
Confidence 35555544 699999999999877654 478899999
Q ss_pred hhhhhHHHHHHHHHHHHHhcCc
Q 023799 209 FVGRLAQLGIAFSLIGEIITGK 230 (277)
Q Consensus 209 kNGRLAMlg~~G~ivqE~vTGk 230 (277)
+|||+||+|++|++++|+++|.
T Consensus 139 iHGRwAMLAvaG~lvpEll~G~ 160 (286)
T PLN00187 139 IHGRWAMLATLGALSVEALTGV 160 (286)
T ss_pred hhhHHHHHHhhchhhHHhccCC
Confidence 9999999999999999998774
No 22
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.16 E-value=4.2e-11 Score=110.94 Aligned_cols=61 Identities=30% Similarity=0.327 Sum_probs=47.9
Q ss_pred CCCCCCCcCCCCCCCCCCCCCCCCCC-----CccccchhhhhhhhhHHHHHHHHHHHHHhcCcChHHH
Q 023799 173 PTGLGGAVIPPGKGLRSALGLKEGGP-----IFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQ 235 (277)
Q Consensus 173 p~g~~~~~~~PGd~~~dPlGL~~~~~-----~~~~~k~kELkNGRLAMlg~~G~ivqE~vTGkg~l~~ 235 (277)
|.+.++. .|||..|||+||++.+. +.++++.+||+|||+||+|++|+++||+++++|++.+
T Consensus 52 P~yLdG~--lPGD~GFDPlGL~~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~~ 117 (262)
T PLN00048 52 LSYLDGT--LPGDFGFDPLGLSDPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQ 117 (262)
T ss_pred ccccCCC--CCCccCCCccccCCccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhccCCcccc
Confidence 4444443 69999999999974221 2346788999999999999999999999998887653
No 23
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.15 E-value=1.6e-11 Score=113.68 Aligned_cols=51 Identities=24% Similarity=0.284 Sum_probs=46.9
Q ss_pred CCCCCCCCCCCCCCCCCCccccchhhhhhhhhHHHHHHHHHHHHHhcCcCh
Q 023799 182 PPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGA 232 (277)
Q Consensus 182 ~PGd~~~dPlGL~~~~~~~~~~k~kELkNGRLAMlg~~G~ivqE~vTGkg~ 232 (277)
.|||..|||+||+++++++++++.+||+|||+||+|++|++++|++++.|.
T Consensus 70 ~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g~ 120 (262)
T PLN00025 70 FPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGV 120 (262)
T ss_pred CCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCCc
Confidence 699988999999888888899999999999999999999999999986554
No 24
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.15 E-value=7.1e-11 Score=108.41 Aligned_cols=61 Identities=21% Similarity=0.217 Sum_probs=49.7
Q ss_pred ccCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccchhhhhhhhhHHHHHHHHHHHHHhc
Q 023799 166 FVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIIT 228 (277)
Q Consensus 166 ~~~~~~~p~g~~~~~~~PGd~~~dPlGL~~~~~~~~~~k~kELkNGRLAMlg~~G~ivqE~vT 228 (277)
|....+.|...++ ..|||.+|||+||+++++.+++++.+||+|||+||+|++|+++||+++
T Consensus 38 W~P~~~~P~~Ldg--~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~ 98 (246)
T PLN00100 38 WYPGATAPKYLDG--TMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVG 98 (246)
T ss_pred cCCCCCCCCCCCC--CCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc
Confidence 4433333444444 379998899999988877888999999999999999999999999975
No 25
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.14 E-value=1.5e-11 Score=116.37 Aligned_cols=52 Identities=25% Similarity=0.179 Sum_probs=47.4
Q ss_pred CCCCCCCCCCCCCCCCCCccccchhhhhhhhhHHHHHHHHHHHHHhcCcChH
Q 023799 182 PPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL 233 (277)
Q Consensus 182 ~PGd~~~dPlGL~~~~~~~~~~k~kELkNGRLAMlg~~G~ivqE~vTGkg~l 233 (277)
.|||.+|||+||+++++.+++++.+||+|||+||+|++|+++||++++.+.+
T Consensus 127 lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~~ 178 (324)
T PLN00171 127 LPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGAV 178 (324)
T ss_pred CCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCcc
Confidence 7999999999998887788899999999999999999999999998876543
No 26
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.13 E-value=5.1e-11 Score=109.37 Aligned_cols=62 Identities=26% Similarity=0.201 Sum_probs=49.8
Q ss_pred ccCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccchhhhhhhhhHHHHHHHHHHHHHhcC
Q 023799 166 FVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITG 229 (277)
Q Consensus 166 ~~~~~~~p~g~~~~~~~PGd~~~dPlGL~~~~~~~~~~k~kELkNGRLAMlg~~G~ivqE~vTG 229 (277)
|......|...++ ..|||.+|||+||+++++++++++.+||||||+||+|++|+++||.++.
T Consensus 47 w~P~~~~P~~Ldg--~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~ 108 (243)
T PLN00099 47 WMPGQPRPPYLDG--SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL 108 (243)
T ss_pred ccCCCCCCccCCC--CCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc
Confidence 3333333444433 3799988999999887778899999999999999999999999999753
No 27
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.12 E-value=2.3e-11 Score=103.50 Aligned_cols=49 Identities=33% Similarity=0.344 Sum_probs=43.5
Q ss_pred CCCCCCCCCCCCCCCCCCccccchhhhhhhhhHHHHHHHHHHHHHhcCcC
Q 023799 182 PPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKG 231 (277)
Q Consensus 182 ~PGd~~~dPlGL~~~~~~~~~~k~kELkNGRLAMlg~~G~ivqE~vTGkg 231 (277)
.+||..|||+||+++. .+.+++..||+|||+||+|++|++++|+.++.+
T Consensus 9 ~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~ 57 (156)
T PF00504_consen 9 VPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGFP 57 (156)
T ss_dssp STTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTT
T ss_pred CCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCC
Confidence 5777779999998765 788999999999999999999999999998843
No 28
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.02 E-value=4.3e-10 Score=101.29 Aligned_cols=49 Identities=27% Similarity=0.310 Sum_probs=41.9
Q ss_pred CCCCCCCCCCCCC-CCCCccccchhhhhhhhhHHHHHHHHHHHHHhcCcC
Q 023799 183 PGKGLRSALGLKE-GGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKG 231 (277)
Q Consensus 183 PGd~~~dPlGL~~-~~~~~~~~k~kELkNGRLAMlg~~G~ivqE~vTGkg 231 (277)
.||.+|||+|+++ ++++++++|.+||||||+||+|++|+++||.++.-|
T Consensus 54 ~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG 103 (209)
T PLN00089 54 TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPG 103 (209)
T ss_pred CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC
Confidence 4777789999975 344678999999999999999999999999987544
No 29
>PHA02337 putative high light inducible protein
Probab=98.95 E-value=5.8e-10 Score=73.52 Aligned_cols=31 Identities=42% Similarity=0.603 Sum_probs=29.2
Q ss_pred ccchhhhhhhHHHHHHHHHHHHhhhhhccch
Q 023799 96 FTKQNELFVGRVAMIGFAASLLGEGITGKGI 126 (277)
Q Consensus 96 f~r~aEl~nGR~AMLG~~g~lv~E~~tg~g~ 126 (277)
|+.++|++|||+||+||+..++.|++||+++
T Consensus 1 ft~~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 1 MTPEAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred CccHHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 6789999999999999999999999999875
No 30
>PHA02337 putative high light inducible protein
Probab=98.88 E-value=1.3e-09 Score=71.79 Aligned_cols=31 Identities=29% Similarity=0.359 Sum_probs=28.3
Q ss_pred ccchhhhhhhhhHHHHHHHHHHHHHhcCcCh
Q 023799 202 FTKSNELFVGRLAQLGIAFSLIGEIITGKGA 232 (277)
Q Consensus 202 ~~k~kELkNGRLAMlg~~G~ivqE~vTGkg~ 232 (277)
|++.+|++|||+||+||+..+..|.+||+++
T Consensus 1 ft~~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 1 MTPEAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred CccHHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 3567899999999999999999999999974
No 31
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=98.86 E-value=3.3e-09 Score=92.68 Aligned_cols=52 Identities=48% Similarity=0.827 Sum_probs=47.9
Q ss_pred cchhhhhhhHHHHHHHHHHHHhhhhh-ccchhhhhccccCcccccchhHHHHH
Q 023799 97 TKQNELFVGRVAMIGFAASLLGEGIT-GKGILAQLNLETGIPIYEAEPLLLFF 148 (277)
Q Consensus 97 ~r~aEl~nGR~AMLG~~g~lv~E~~t-g~g~~~q~~~~~G~p~~~~~pl~l~~ 148 (277)
++..|+||||+||+||+..++.|++| |+|++.|++.++|.|+.+.+++.+++
T Consensus 135 qK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvPi~e~E~f~~fF 187 (214)
T PLN00084 135 QKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPVIDEELFAAFF 187 (214)
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccccCCcchhhHHHHHHH
Confidence 46899999999999999999999999 99999999999999999988876544
No 32
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=98.67 E-value=6.1e-09 Score=93.41 Aligned_cols=45 Identities=24% Similarity=0.284 Sum_probs=38.7
Q ss_pred CCCCCCCCCCCCCCC--CCCCccccchhhhhhhhhHHHHHHHHHHHHH
Q 023799 181 IPPGKGLRSALGLKE--GGPIFGFTKSNELFVGRLAQLGIAFSLIGEI 226 (277)
Q Consensus 181 ~~PGd~~~dPlGL~~--~~~~~~~~k~kELkNGRLAMlg~~G~ivqE~ 226 (277)
..|.+ +|||+|+.+ +++++++++.+||||||+||+|++|+++||.
T Consensus 41 ~~p~g-~fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~ 87 (202)
T PLN00120 41 QAPLG-FFDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEA 87 (202)
T ss_pred CCCCC-CCCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecc
Confidence 35665 689999963 4567889999999999999999999999996
No 33
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=98.28 E-value=5.9e-07 Score=81.83 Aligned_cols=38 Identities=26% Similarity=0.363 Sum_probs=34.6
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHhcCcChHHHhHHhh
Q 023799 203 TKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIET 240 (277)
Q Consensus 203 ~k~kELkNGRLAMlg~~G~ivqE~vTGkg~l~~l~~~~ 240 (277)
...+|+.|||+|||||+..++.|.+||+|+++|++...
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f~ 196 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNFF 196 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhhh
Confidence 35699999999999999999999999999999997544
No 34
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=98.24 E-value=7.3e-07 Score=81.21 Aligned_cols=35 Identities=37% Similarity=0.656 Sum_probs=33.0
Q ss_pred chhhhhhhHHHHHHHHHHHHhhhhhccchhhhhcc
Q 023799 98 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 132 (277)
Q Consensus 98 r~aEl~nGR~AMLG~~g~lv~E~~tg~g~~~q~~~ 132 (277)
.++|++|||+||+||+.+++.|++||+|+++|++.
T Consensus 160 ~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~ 194 (250)
T PLN00014 160 PEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGN 194 (250)
T ss_pred chhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhh
Confidence 47999999999999999999999999999999865
No 35
>PLN02449 ferrochelatase
Probab=82.51 E-value=0.85 Score=46.30 Aligned_cols=30 Identities=33% Similarity=0.360 Sum_probs=26.4
Q ss_pred CCCCCccchhhhhhhHHHHHHHHHHHHhhhhhccchhh
Q 023799 91 SGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILA 128 (277)
Q Consensus 91 ~~~fGf~r~aEl~nGR~AMLG~~g~lv~E~~tg~g~~~ 128 (277)
.|.|||++ +||+||+..++.|+++|+|+++
T Consensus 455 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 484 (485)
T PLN02449 455 VWEWGWTK--------AAMLAVLLLLVLEVTSGFGNLH 484 (485)
T ss_pred hhhhcccc--------hHHHHHHHHHHHHHHcCCCcCC
Confidence 46689987 9999999999999999998754
No 36
>PLN02449 ferrochelatase
Probab=76.72 E-value=1.5 Score=44.64 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHhcCcChHH
Q 023799 213 LAQLGIAFSLIGEIITGKGALA 234 (277)
Q Consensus 213 LAMlg~~G~ivqE~vTGkg~l~ 234 (277)
+||+||+.+++.|+++|+|++.
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~ 484 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNLH 484 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcCC
Confidence 9999999999999999999874
No 37
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=22.66 E-value=1.7e+02 Score=25.47 Aligned_cols=44 Identities=30% Similarity=0.476 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHhcCcChHHHhHHhhCCCccchhhHHHHHHHHHHHHhcC
Q 023799 213 LAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALN 264 (277)
Q Consensus 213 LAMlg~~G~ivqE~vTGkg~l~~l~~~~g~p~~~~~~~~~~~~~~~~~~~~~ 264 (277)
|.++|+..++..-++||+ ....+.- ...|++.+..+.+++.|+.
T Consensus 5 liL~~~~~l~~~l~~sG~-i~~YI~P-------~~~~~~~~a~i~l~ilai~ 48 (182)
T PF09323_consen 5 LILLGFGILLFYLILSGK-ILLYIHP-------RYIPLLYFAAILLLILAIV 48 (182)
T ss_pred HHHHHHHHHHHHHHHhCc-HHHHhCc-------cHHHHHHHHHHHHHHHHHH
Confidence 688999999999999996 3334432 3567777777777666653
No 38
>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]
Probab=22.62 E-value=47 Score=32.74 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=24.7
Q ss_pred CCccchhhhhhhH------HHHHHHHHHHHhhhhhccchh
Q 023799 94 FGFTKQNELFVGR------VAMIGFAASLLGEGITGKGIL 127 (277)
Q Consensus 94 fGf~r~aEl~nGR------~AMLG~~g~lv~E~~tg~g~~ 127 (277)
--|+|++|+..|- +=|- .+|+++.|+++|+..|
T Consensus 164 TRWYRaPELLvGDtqYG~pVDiW-AiGCv~aEl~~G~pL~ 202 (396)
T KOG0593|consen 164 TRWYRAPELLVGDTQYGKPVDIW-AIGCVFAELLTGEPLW 202 (396)
T ss_pred hhhccChhhhcccCcCCCcccch-hhhHHHHHHhcCCcCC
Confidence 4699999999982 1222 3699999999987654
Done!