Query 023799
Match_columns 277
No_of_seqs 199 out of 1319
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 12:59:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023799.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023799hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pl9_A Chlorophyll A-B binding 100.0 2.7E-31 9.3E-36 240.5 9.4 139 94-245 89-235 (243)
2 2bhw_A Chlorophyll A-B binding 100.0 5.5E-31 1.9E-35 237.8 9.6 159 79-245 31-218 (232)
3 2wsc_1 AT3G54890, LHCA1; photo 100.0 1.4E-31 4.6E-36 242.8 3.1 164 71-245 45-230 (241)
4 2wsc_3 LHCA3, type II chloroph 100.0 3.5E-32 1.2E-36 250.8 -0.9 175 71-245 56-266 (276)
5 2wsc_2 LHCA2, type II chloroph 100.0 4.4E-31 1.5E-35 242.6 4.1 174 70-243 63-258 (269)
6 2wsc_4 Chlorophyll A-B binding 100.0 1E-30 3.5E-35 238.3 1.0 169 71-245 53-241 (251)
7 2wsc_4 Chlorophyll A-B binding 99.2 1.4E-12 4.6E-17 118.9 -0.0 52 182-233 70-121 (251)
8 2wsc_2 LHCA2, type II chloroph 99.2 2.5E-12 8.5E-17 118.2 1.4 52 182-233 81-132 (269)
9 2bhw_A Chlorophyll A-B binding 99.1 1.2E-11 4.2E-16 111.4 3.1 48 182-229 40-87 (232)
10 3pl9_A Chlorophyll A-B binding 99.1 2.5E-11 8.7E-16 109.9 2.0 63 166-230 14-119 (243)
11 2wsc_1 AT3G54890, LHCA1; photo 98.9 6.3E-11 2.2E-15 107.4 -0.9 48 182-229 62-109 (241)
12 2wsc_3 LHCA3, type II chloroph 98.9 1.9E-11 6.5E-16 112.7 -4.4 51 182-233 73-129 (276)
No 1
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.97 E-value=2.7e-31 Score=240.50 Aligned_cols=139 Identities=24% Similarity=0.266 Sum_probs=101.8
Q ss_pred CCccchhhhhhhHHHHHHHHHHHHhhhhhccchhhhhcc--------ccCcccccchhHHHHHHHHHHHHHHhhhccCCC
Q 023799 94 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL--------ETGIPIYEAEPLLLFFILFTLLGAIGALGDRGK 165 (277)
Q Consensus 94 fGf~r~aEl~nGR~AMLG~~g~lv~E~~tg~g~~~q~~~--------~~G~p~~~~~pl~l~~i~~~llgai~~~~~~~~ 165 (277)
+.|+|++|++||||||||++|++++|+++|..+.. .+. ..+.+..... ..++++++.+++++|.+...+
T Consensus 89 l~r~ReaELkHGRwAMLAvlG~lvpE~l~g~~W~~-aG~~~~~~g~~y~g~p~~~~i-~~l~~~qv~lmG~~E~~R~~~- 165 (243)
T 3pl9_A 89 LQRFRECELIHGRWAMLATLGALTVEGLTGITWQD-AGKVELIEGSSYLGQPLPFSM-TTLIWIEVLVIGYIEFQRNAE- 165 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTT-HHHHHHHSCEEETTEEECCCH-HHHHHHHHHHHHHHHHHHHSC-
T ss_pred hHHHHHhhhhcchhHHHHHHHHHhHHhhcCccccc-ccccccccccccccCccchhh-HHHHHHHHHHHHHHHHHhhcc-
Confidence 44678999999999999999999999987642211 010 0111111011 123344567788887542211
Q ss_pred ccCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccchhhhhhhhhHHHHHHHHHHHHHhcCcChHHHhHHhhCCCcc
Q 023799 166 FVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN 245 (277)
Q Consensus 166 ~~~~~~~p~g~~~~~~~PGd~~~dPlGL~~~~~~~~~~k~kELkNGRLAMlg~~G~ivqE~vTGkg~l~~l~~~~g~p~~ 245 (277)
.+ + ....+|||. |||+|+.+++++++++|.+|||||||||+|++|+++||++||+|+++||..|+.+|++
T Consensus 166 -~~----~----~~~~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~~HladP~~ 235 (243)
T 3pl9_A 166 -LD----T----EKRLYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHLSDPLH 235 (243)
T ss_dssp -CC----T----TTTTCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHCSGG
T ss_pred -cC----C----ccccCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcch
Confidence 11 1 112489995 8999999888888899999999999999999999999999999999999999999985
No 2
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.97 E-value=5.5e-31 Score=237.76 Aligned_cols=159 Identities=28% Similarity=0.393 Sum_probs=112.6
Q ss_pred CCCCCCCCcCCCCCCC---C---------ccchhhhhhhHHHHHHHHHHHHhhhhhccch------hhhhcc----c---
Q 023799 79 KKPKVEDGIFGTSGGF---G---------FTKQNELFVGRVAMIGFAASLLGEGITGKGI------LAQLNL----E--- 133 (277)
Q Consensus 79 ~~p~~~dg~~~~~~~f---G---------f~r~aEl~nGR~AMLG~~g~lv~E~~tg~g~------~~q~~~----~--- 133 (277)
+.|+++||.+.+|.+| | |+|++|||||||||||++|++++|+++..|+ +...+. .
T Consensus 31 ~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G~~~~~~~w~~ag~~~~~~~~~ 110 (232)
T 2bhw_A 31 ESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGVKFGEAVWFKAGSQIFSEGGL 110 (232)
T ss_dssp SCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSCCSGGGSGGGGGSTTCE
T ss_pred CCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccCCcCCcccccccccchhccccch
Confidence 7899999999887764 2 4599999999999999999999999874332 111110 0
Q ss_pred --cCcccc-cchhH-HHHHHHHHHHHHHhhhccCCCccCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccchhhhh
Q 023799 134 --TGIPIY-EAEPL-LLFFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELF 209 (277)
Q Consensus 134 --~G~p~~-~~~pl-~l~~i~~~llgai~~~~~~~~~~~~~~~p~g~~~~~~~PGd~~~dPlGL~~~~~~~~~~k~kELk 209 (277)
.+.|.. ..+.+ .++++.+.+++++|.....+. +.+......+|||. |||+|+.+++++++++|.+||+
T Consensus 111 ~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~g-------~~g~~~d~~~Pg~~-fdPlgl~~~~~~~~~~~~~E~~ 182 (232)
T 2bhw_A 111 DYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGG-------PLGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELK 182 (232)
T ss_dssp EGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHEE-------TTEECSSSSCCCTT-SCTTCTTCSHHHHHHHHHHHHH
T ss_pred hcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhccC-------cccccccccCCCcc-cccchhccchHHHHHHHHhhhh
Confidence 011110 11111 223344456677765321110 00101122589985 8999998877778889999999
Q ss_pred hhhhHHHHHHHHHHHHHhcCcChHHHhHHhhCCCcc
Q 023799 210 VGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN 245 (277)
Q Consensus 210 NGRLAMlg~~G~ivqE~vTGkg~l~~l~~~~g~p~~ 245 (277)
||||||+||+|+++||.+||+|+++|+..|+++|.+
T Consensus 183 nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~adP~~ 218 (232)
T 2bhw_A 183 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 218 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHCTTT
T ss_pred ccchHHHHHHHHHHHHHhcCCChHHHHHHHhcChHH
Confidence 999999999999999999999999999999999975
No 3
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.96 E-value=1.4e-31 Score=242.78 Aligned_cols=164 Identities=23% Similarity=0.249 Sum_probs=103.4
Q ss_pred cCCCCCCCCCCCCCCCcCCCCCCC---C---------ccchhhhhhhHHHHHHHHHHHHhhhhhccchhhh--h-ccccC
Q 023799 71 KTKAPPKTKKPKVEDGIFGTSGGF---G---------FTKQNELFVGRVAMIGFAASLLGEGITGKGILAQ--L-NLETG 135 (277)
Q Consensus 71 ks~a~p~~~~p~~~dg~~~~~~~f---G---------f~r~aEl~nGR~AMLG~~g~lv~E~~tg~g~~~q--~-~~~~G 135 (277)
.+.+.|+.++|+++||.+.++.+| | |+|++||+||||||||++|++++|+++...+.+. + ....|
T Consensus 45 ~~~w~P~~~~P~~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~~~~~~a~~~~~~~~g 124 (241)
T 2wsc_1 45 AAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGG 124 (241)
T ss_dssp ----------------CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCCC-----CCCCSCSSC
T ss_pred ccccCCCCCCcccccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccCCccccccchhccCCc
Confidence 345678889999999998777654 2 4589999999999999999999998764322110 1 01112
Q ss_pred ccccc------chhHHHHHHHHHHHHHHhhhccCCCccCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccchhhhh
Q 023799 136 IPIYE------AEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELF 209 (277)
Q Consensus 136 ~p~~~------~~pl~l~~i~~~llgai~~~~~~~~~~~~~~~p~g~~~~~~~PGd~~~dPlGL~~~~~~~~~~k~kELk 209 (277)
...+. .....++++.+.+++++|.+.. ...+ + ....|||+ +|||+|+.+++++++++|.+|||
T Consensus 125 ~a~~~~~~~~~~~~~~i~~iq~l~ig~~E~~r~----~~~~--~----~~~~yPgg-~fDPlgl~~~~~~~~~~r~~E~~ 193 (241)
T 2wsc_1 125 QATYLGNPVPWGTLPTILAIEFLAIAFVEHQRS----MEKD--P----EKKKYPGG-AFDPLGYSKDPKKLEELKVKEIK 193 (241)
T ss_dssp SSCCSSSCSSSSSHHHHHHHHHHHTHHHHHHHT----SCCS--S----CCSSSCSC-CSCSSSCSCSSSSCCCSCTTHHH
T ss_pred chhhhcCcchHHHHHHHHHHHHHHHHHHHHHHH----hccC--C----CCCCCCCC-cccccccccchhHHHHHHHhhcc
Confidence 11110 0011223344556777765321 1111 1 11248998 68999998888888899999999
Q ss_pred hhhhHHHHHHHHHHHH-HhcCcChHHHhHHhhCCCcc
Q 023799 210 VGRLAQLGIAFSLIGE-IITGKGALAQLNIETGIPIN 245 (277)
Q Consensus 210 NGRLAMlg~~G~ivqE-~vTGkg~l~~l~~~~g~p~~ 245 (277)
||||||+|++|+++|| .+||+||+++|..|++||.+
T Consensus 194 nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~adP~~ 230 (241)
T 2wsc_1 194 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH 230 (241)
T ss_dssp HHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSCCCSCC
T ss_pred cccHHHHHHHHHHHhhhhcCCCchHHHHHHHhcCccc
Confidence 9999999999999999 58999999999999999985
No 4
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.96 E-value=3.5e-32 Score=250.77 Aligned_cols=175 Identities=21% Similarity=0.221 Sum_probs=92.0
Q ss_pred cCCCCCCCCCCCCCCCcCCCCCC-----------C------CccchhhhhhhHHHHHHHHHHHHhhhhhccchhh-----
Q 023799 71 KTKAPPKTKKPKVEDGIFGTSGG-----------F------GFTKQNELFVGRVAMIGFAASLLGEGITGKGILA----- 128 (277)
Q Consensus 71 ks~a~p~~~~p~~~dg~~~~~~~-----------f------Gf~r~aEl~nGR~AMLG~~g~lv~E~~tg~g~~~----- 128 (277)
..+..|+.+.|+++||.+.+|.+ + +|+|++|++||||||||++|++++|++++.|+..
T Consensus 56 R~~wlP~~~~P~~L~G~~pGD~GfDPlGl~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~~~~~p~ 135 (276)
T 2wsc_3 56 RPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETAL 135 (276)
T ss_dssp -----------------------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSCCCCCCSSCC
T ss_pred ccccCCCCCCcccccCcCCCccCCCccccCChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhcccccccccCcc
Confidence 34446788999999998877755 3 5689999999999999999999999999877642
Q ss_pred -hhccc----cCcccccchhHHHHHHHHHHHHHHhhhccCCCccCC--CCCC-------CCCCCCcCCCCCCCCCCCCCC
Q 023799 129 -QLNLE----TGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDE--PDEP-------TGLGGAVIPPGKGLRSALGLK 194 (277)
Q Consensus 129 -q~~~~----~G~p~~~~~pl~l~~i~~~llgai~~~~~~~~~~~~--~~~p-------~g~~~~~~~PGd~~~dPlGL~ 194 (277)
|+... .|...+...+..++++++.+++++|..........+ ...+ ........+|||.+|||+|+.
T Consensus 136 ~w~~~g~ip~aG~~~~~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~~g~~~~~~~~~d~~yPG~~~fDPlgl~ 215 (276)
T 2wsc_3 136 PWFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFG 215 (276)
T ss_dssp SSSSCCCC-----CCCSCCCCSTTHHHHHHTHHHHTTTTTGGGSCCCCCCCCSSCSCCCCCCCSSCTTTSSSSCCCCCCS
T ss_pred hhhhhhcccchhHHHHhccchHHHHHHHHHHHHHHHhhhcccccCCcccccccccccccccccccccCCCcccccchhcc
Confidence 11100 111111111222234445667877753211100000 0000 011123368999779999998
Q ss_pred CCCCCccccchhhhhhhhhHHHHHHHHHHHHHhcCcChHHHhHHhhCCCcc
Q 023799 195 EGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN 245 (277)
Q Consensus 195 ~~~~~~~~~k~kELkNGRLAMlg~~G~ivqE~vTGkg~l~~l~~~~g~p~~ 245 (277)
+++++++++|.+|||||||||+||+|+++||++||+|+++||..|+.+|.+
T Consensus 216 ~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~HladP~~ 266 (276)
T 2wsc_3 216 KDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVH 266 (276)
T ss_dssp SSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC----------
T ss_pred cccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHhccCccc
Confidence 877778899999999999999999999999999999999999999999986
No 5
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.96 E-value=4.4e-31 Score=242.64 Aligned_cols=174 Identities=25% Similarity=0.258 Sum_probs=103.3
Q ss_pred ccCCCCCCCCCCCCCCCcCCCCCCC------------CccchhhhhhhHHHHHHHHHHHHhhhhhccchhhhhc-cccCc
Q 023799 70 SKTKAPPKTKKPKVEDGIFGTSGGF------------GFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLN-LETGI 136 (277)
Q Consensus 70 ~ks~a~p~~~~p~~~dg~~~~~~~f------------Gf~r~aEl~nGR~AMLG~~g~lv~E~~tg~g~~~q~~-~~~G~ 136 (277)
...+..|..+.|+++||.+.+|.+| .|+|++||+||||||||++|++++|++++.|+..... ...|.
T Consensus 63 ~r~~wlpg~~~P~~L~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~~~p~w~~aG~ 142 (269)
T 2wsc_2 63 DRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGE 142 (269)
T ss_dssp -------------------------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSSSCCCCCSTTS
T ss_pred CcccccCCCCCcccccCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcccCccccccch
Confidence 4556678889999999988776553 4679999999999999999999999998776542110 11222
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhccCC--CccCCCCCC--C---CCCCCcCCCCCCCCCCCCCCC-CCCCccccchhhh
Q 023799 137 PIYEAEPLLLFFILFTLLGAIGALGDRG--KFVDEPDEP--T---GLGGAVIPPGKGLRSALGLKE-GGPIFGFTKSNEL 208 (277)
Q Consensus 137 p~~~~~pl~l~~i~~~llgai~~~~~~~--~~~~~~~~p--~---g~~~~~~~PGd~~~dPlGL~~-~~~~~~~~k~kEL 208 (277)
..+...+..++++++.+++++|.+.... +......++ . ....+..+|||.+|||+|+.+ ++++++++|.+||
T Consensus 143 ~~~~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~~PG~~~fDPlgl~~~~~e~~~~~~~~Ei 222 (269)
T 2wsc_2 143 QEYFTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEI 222 (269)
T ss_dssp SSSCCCTTSHHHHHTTHHHHHHHHHHTTSSCCCCCSSSCCSSSCCSSTTSCSCTTCSSCCCSSSSSSCCCSCTTSTTTTH
T ss_pred hhhhcchHHHHHHHHHHHHHHHHHHHhccccCCccccccccccccccccccCCCCCcccCccccCcccHHHHHHHHHhhc
Confidence 2221121222334455778887532111 100000000 0 011233689997689999964 5667889999999
Q ss_pred hhhhhHHHHHHHHHHHHHhcCcChHHHhH-HhhCCC
Q 023799 209 FVGRLAQLGIAFSLIGEIITGKGALAQLN-IETGIP 243 (277)
Q Consensus 209 kNGRLAMlg~~G~ivqE~vTGkg~l~~l~-~~~g~p 243 (277)
+|||||||||+|+++||.+||+|+++||. +|+.||
T Consensus 223 ~nGRlAMla~~g~~~~~~~tg~g~l~~l~~~HladP 258 (269)
T 2wsc_2 223 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADP 258 (269)
T ss_dssp HHHHHHHTTTSSSCHHHHHTTTCSSCCCSCCCCCCS
T ss_pred ccchHHHHHHHHHHHHHHhcCCChHHHHHHHHhcCc
Confidence 99999999999999999999999999999 999999
No 6
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.96 E-value=1e-30 Score=238.32 Aligned_cols=169 Identities=28% Similarity=0.274 Sum_probs=98.2
Q ss_pred cCCCCCCCCCCCCCCCcCCCCCC------------CCccchhhhhhhHHHHHHHHHHHHhhhhhccchhhhhc-cccCcc
Q 023799 71 KTKAPPKTKKPKVEDGIFGTSGG------------FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLN-LETGIP 137 (277)
Q Consensus 71 ks~a~p~~~~p~~~dg~~~~~~~------------fGf~r~aEl~nGR~AMLG~~g~lv~E~~tg~g~~~q~~-~~~G~p 137 (277)
..+..|..+.|+++||.+.++.+ +.|+|++|++||||||||++|++++|++++.|+..... ...|..
T Consensus 53 r~~~~pg~~~p~~l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~~~p~w~~aG~~ 132 (251)
T 2wsc_4 53 KGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKE 132 (251)
T ss_dssp ----------------------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSSCCCCCSCCCSS
T ss_pred hhhccCCCCCccccCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCccCCccccccchH
Confidence 45566777889999988766543 46779999999999999999999999999887653110 112322
Q ss_pred cccchhHHHHHHHHHHHHHHhhhccCC--CccCCCCCCC--C---CCCCcCCCCCCCCCCCCCCCCCCCccccchhhhhh
Q 023799 138 IYEAEPLLLFFILFTLLGAIGALGDRG--KFVDEPDEPT--G---LGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFV 210 (277)
Q Consensus 138 ~~~~~pl~l~~i~~~llgai~~~~~~~--~~~~~~~~p~--g---~~~~~~~PGd~~~dPlGL~~~~~~~~~~k~kELkN 210 (277)
.+...+..++++++.+++++|...... +-.+....|. + ......||||. |||+|+++ ++++|+|||||
T Consensus 133 ~~~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~yPGg~-FDPLgl~~----~~~~k~kELkN 207 (251)
T 2wsc_4 133 EYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGI-FNPLNFAP----TLEAKEKEIAN 207 (251)
T ss_dssp SCSSCSSCTTTTHHHHHHTTTHHHHHHHSSCCCTTCCSSSCSSSSCCHHHHSSCCT-TCCCCCCS----SSSCTTHHHHH
T ss_pred hhhccchHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccccccccCCCCc-cCccchhH----HHHHHHHHHhc
Confidence 221111111222334667766431110 0000000010 0 00123589995 89999965 56799999999
Q ss_pred hhhHHHHHHHHHHHHHhcCcChHHHhHHhhCCCcc
Q 023799 211 GRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN 245 (277)
Q Consensus 211 GRLAMlg~~G~ivqE~vTGkg~l~~l~~~~g~p~~ 245 (277)
||| ||||+|+++||.+||++|++||.+|++||.+
T Consensus 208 GRL-MlAilGf~vQe~vTG~gPl~nL~~hladP~~ 241 (251)
T 2wsc_4 208 GRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWH 241 (251)
T ss_dssp HHT-TTTHHHHHHHHTTSCCCCCCCTTTTTTCCCC
T ss_pred chh-HHHHHHHHHHHHhcCccHHHHHHHHccChhh
Confidence 999 9999999999999999999999999999975
No 7
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.20 E-value=1.4e-12 Score=118.94 Aligned_cols=52 Identities=35% Similarity=0.443 Sum_probs=38.9
Q ss_pred CCCCCCCCCCCCCCCCCCccccchhhhhhhhhHHHHHHHHHHHHHhcCcChH
Q 023799 182 PPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL 233 (277)
Q Consensus 182 ~PGd~~~dPlGL~~~~~~~~~~k~kELkNGRLAMlg~~G~ivqE~vTGkg~l 233 (277)
+|||.+|||+||+++++.+++++.+||+|||+||+|++|++++|++++.|++
T Consensus 70 ~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~ 121 (251)
T 2wsc_4 70 LPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121 (251)
T ss_dssp -----------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred cCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence 7999889999999888899999999999999999999999999999998876
No 8
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.20 E-value=2.5e-12 Score=118.20 Aligned_cols=52 Identities=33% Similarity=0.330 Sum_probs=36.2
Q ss_pred CCCCCCCCCCCCCCCCCCccccchhhhhhhhhHHHHHHHHHHHHHhcCcChH
Q 023799 182 PPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL 233 (277)
Q Consensus 182 ~PGd~~~dPlGL~~~~~~~~~~k~kELkNGRLAMlg~~G~ivqE~vTGkg~l 233 (277)
.|||.+|||+||+++++.+++++.+||+|||+||+|++|+++||++++.|.+
T Consensus 81 ~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~ 132 (269)
T 2wsc_2 81 LPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL 132 (269)
T ss_dssp -------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred CCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence 6999889999998888899999999999999999999999999999987654
No 9
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.14 E-value=1.2e-11 Score=111.43 Aligned_cols=48 Identities=25% Similarity=0.280 Sum_probs=44.7
Q ss_pred CCCCCCCCCCCCCCCCCCccccchhhhhhhhhHHHHHHHHHHHHHhcC
Q 023799 182 PPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITG 229 (277)
Q Consensus 182 ~PGd~~~dPlGL~~~~~~~~~~k~kELkNGRLAMlg~~G~ivqE~vTG 229 (277)
.|||.+|||+||+++++.+++++.+||||||+||+|++|++++|+++.
T Consensus 40 ~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~ 87 (232)
T 2bhw_A 40 FPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSR 87 (232)
T ss_dssp STTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhcc
Confidence 799999999999988778889999999999999999999999999764
No 10
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.07 E-value=2.5e-11 Score=109.95 Aligned_cols=63 Identities=25% Similarity=0.207 Sum_probs=28.8
Q ss_pred ccCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCC-------------------------------------------Cccc
Q 023799 166 FVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGP-------------------------------------------IFGF 202 (277)
Q Consensus 166 ~~~~~~~p~g~~~~~~~PGd~~~dPlGL~~~~~-------------------------------------------~~~~ 202 (277)
|..+.++|...++. .|||.+|||+||+++++ .+++
T Consensus 14 w~pg~~~P~~LdGs--lpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~r 91 (243)
T 3pl9_A 14 WYPGAKAPEYLDGS--LVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQPYSEVFGLQR 91 (243)
T ss_dssp ----------------------------------------------------------------------------CCHH
T ss_pred ccCCCCCcccccCC--CCCcCCCCccccCCChhhhccccccchhhhhccccccccccccccccccccccccccchhhhHH
Confidence 33333345555443 79999999999987764 3678
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHhcCc
Q 023799 203 TKSNELFVGRLAQLGIAFSLIGEIITGK 230 (277)
Q Consensus 203 ~k~kELkNGRLAMlg~~G~ivqE~vTGk 230 (277)
++.+||+|||.||+|++|++++|+++|-
T Consensus 92 ~ReaELkHGRwAMLAvlG~lvpE~l~g~ 119 (243)
T 3pl9_A 92 FRECELIHGRWAMLATLGALTVEGLTGI 119 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHhhhhcchhHHHHHHHHHhHHhhcCc
Confidence 8999999999999999999999998763
No 11
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=98.94 E-value=6.3e-11 Score=107.37 Aligned_cols=48 Identities=29% Similarity=0.210 Sum_probs=44.3
Q ss_pred CCCCCCCCCCCCCCCCCCccccchhhhhhhhhHHHHHHHHHHHHHhcC
Q 023799 182 PPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITG 229 (277)
Q Consensus 182 ~PGd~~~dPlGL~~~~~~~~~~k~kELkNGRLAMlg~~G~ivqE~vTG 229 (277)
.|||.+|||+||+++++.+++++.+||+|||+||+|++|+++||+++.
T Consensus 62 ~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~ 109 (241)
T 2wsc_1 62 APGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY 109 (241)
T ss_dssp TTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCC
T ss_pred CCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccC
Confidence 699988999999988888889999999999999999999999998753
No 12
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=98.94 E-value=1.9e-11 Score=112.72 Aligned_cols=51 Identities=27% Similarity=0.309 Sum_probs=34.9
Q ss_pred CCCCCCCCCCCCCCCCCCc------cccchhhhhhhhhHHHHHHHHHHHHHhcCcChH
Q 023799 182 PPGKGLRSALGLKEGGPIF------GFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL 233 (277)
Q Consensus 182 ~PGd~~~dPlGL~~~~~~~------~~~k~kELkNGRLAMlg~~G~ivqE~vTGkg~l 233 (277)
.|||.+|||+|| .+++.+ ++++.+||+|||+||+|++|++++|++++.|.+
T Consensus 73 ~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~ 129 (276)
T 2wsc_3 73 LPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLI 129 (276)
T ss_dssp -------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSCCCC
T ss_pred CCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhcccccc
Confidence 699988999999 566677 889999999999999999999999999987754
Done!