BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023800
(277 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OT1|A Chain A, Crystal Structure Of Vc2308 Protein
Length = 208
Score = 97.1 bits (240), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 71/110 (64%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S +ILVP+A+GSEE E VII+D L RA V A+V DKL++ S V L A+ ++ +
Sbjct: 9 SKRILVPVAHGSEEXETVIIVDTLVRAGFQVTXAAVGDKLQVQGSRGVWLTAEQTLEACS 68
Query: 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
++D + LPGG+GGAQAFA S L+ ++ + + AICA+PALV
Sbjct: 69 AEAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVF 118
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 72/178 (40%), Gaps = 33/178 (18%)
Query: 2 EAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR----DACGMPG---- 53
E VI +D L R+G V A+V +L+V GV + A+ + C DA +PG
Sbjct: 24 ETVIIVDTLVRAGFQVTXAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGG 83
Query: 54 ATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK--------------- 98
A +S L +++ + G+L AAIC A+ G +
Sbjct: 84 AQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARXTCHPNFFDHIPSER 143
Query: 99 ----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFT 146
++T++GPGT +EF +A + L G A V+ V+ E +
Sbjct: 144 LSRQRVCYYATQHLLTSQGPGTALEFALAXIALLAGVELAQHVAAPXVLHPQQLTELS 201
>pdb|3OT1|B Chain B, Crystal Structure Of Vc2308 Protein
Length = 208
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 70/110 (63%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S +ILVP+A+GSEE E VII+D L RA V A+V DKL++ S V L A+ ++ +
Sbjct: 9 SKRILVPVAHGSEEXETVIIVDTLVRAGFQVTXAAVGDKLQVQGSRGVWLTAEQTLEACS 68
Query: 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
++D + LPGG+GGAQAFA S L+ ++ + + AI A+PALV
Sbjct: 69 AEAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAIXATPALVF 118
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 71/178 (39%), Gaps = 33/178 (18%)
Query: 2 EAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR----DACGMPG---- 53
E VI +D L R+G V A+V +L+V GV + A+ + C DA +PG
Sbjct: 24 ETVIIVDTLVRAGFQVTXAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGG 83
Query: 54 ATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK--------------- 98
A +S L +++ + G+L AAI A+ G +
Sbjct: 84 AQAFADSTALLALIDAFSQQGKLVAAIXATPALVFAKQQKFVGARXTCHPNFFDHIPSER 143
Query: 99 ----------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFT 146
++T++GPGT +EF +A + L G A V+ V+ E +
Sbjct: 144 LSRQRVCYYATQHLLTSQGPGTALEFALAXIALLAGVELAQHVAAPXVLHPQQLTELS 201
>pdb|2AB0|A Chain A, Crystal Structure Of E. Coli Protein Yajl (Thij)
pdb|2AB0|B Chain B, Crystal Structure Of E. Coli Protein Yajl (Thij)
Length = 205
Score = 90.9 bits (224), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 69/120 (57%), Gaps = 2/120 (1%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQ--VKLVADMLIDE 217
S LV +A GSEE EAV ID+L R V ASVA + +C VKL+AD + E
Sbjct: 2 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVE 61
Query: 218 AAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKV 277
A YD+IVLPGG+ GA+ F S LV +K+ S R AICA+PA VL PH + +
Sbjct: 62 VADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPI 121
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 81/174 (46%), Gaps = 35/174 (20%)
Query: 2 EAVITIDVLRRSGADVVVASV--EKQLRVDACHGVKIVADALVSNCRDA--------CGM 51
EAV TID+L R G V ASV + L + GVK++ADA + D G+
Sbjct: 17 EAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGI 76
Query: 52 PGATNLKESEVLESIVKKQASDGRLYAAICVFLAVAL--------GSWGLLKGLKDG--- 100
GA ++S +L VK+ GR+ AAIC A L G+ LKD
Sbjct: 77 KGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPA 136
Query: 101 --------------KVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRAN 140
K++T++GPGT ++F + +++ L G+ KA EV+ VM A
Sbjct: 137 EQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQLVMAAG 190
>pdb|4E08|A Chain A, Crystal Structure Of Drosophila Melanogaster Dj-1beta
pdb|4E08|B Chain B, Crystal Structure Of Drosophila Melanogaster Dj-1beta
Length = 190
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S LV +A G+EEME +I D+LRRA V VA + + S V+++ D + + A
Sbjct: 5 SKSALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVA 64
Query: 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGL 274
+D++VLPGGLGG+ A +S + ++L+ Q+ AICA+P VL HG+
Sbjct: 65 SDKFDVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPT-VLAKHGV 118
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 76/165 (46%), Gaps = 34/165 (20%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADA----LVSNCRDAC----GMP 52
ME +I DVLRR+G V VA + V V+I+ D + S+ D G+
Sbjct: 19 MEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLG 78
Query: 53 GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKG---------------- 96
G+ + ES ++ +++ Q S G L AAIC V L G+ G
Sbjct: 79 GSNAMGESSLVGDLLRSQESGGGLIAAICAAPTV-LAKHGVASGKSLTSYPSMKPQLVNN 137
Query: 97 ---------LKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVS 132
+KDG ++T+RGPGT EF + + E+L GK K EV+
Sbjct: 138 YSYVDDKTVVKDGNLITSRGPGTAYEFALKIAEELAGKEKVQEVA 182
>pdb|3B36|A Chain A, Structure Of M26l Dj-1
Length = 192
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEME VI +D+LRRA V VA +A K + S V + D +++A
Sbjct: 6 SKRALVILAKGAEEMETVIPVDVLRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 65
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
K YD++VLPGG GAQ ++S + +LK+Q+ AICA P +L
Sbjct: 66 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALL 116
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 82/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMP--- 52
ME VI +DVLRR+G V VA + + V V I DA + + + D +P
Sbjct: 20 METVIPVDVLRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 79
Query: 53 -GATNLKESEVLESIVKKQASDGRLYAAIC----VFLAVALG------------------ 89
GA NL ES ++ I+K+Q + L AAIC LA +G
Sbjct: 80 LGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 139
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 140 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 191
>pdb|1PE0|A Chain A, Crystal Structure Of The K130r Mutant Of Human Dj-1
pdb|1PE0|B Chain B, Crystal Structure Of The K130r Mutant Of Human Dj-1
Length = 197
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEME VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 3 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
K YD++VLPGG GAQ ++S + +LK+Q+ AICA P +L
Sbjct: 63 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALL 113
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMP--- 52
ME VI +DV+RR+G V VA + + V V I DA + + + D +P
Sbjct: 17 METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 76
Query: 53 -GATNLKESEVLESIVKKQASDGRLYAAIC----VFLAVALG------------------ 89
GA NL ES ++ I+K+Q + L AAIC LA +G
Sbjct: 77 LGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLARDKMMNG 136
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 137 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
>pdb|3B3A|A Chain A, Structure Of E163kR145E DJ-1
Length = 192
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEME VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 6 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 65
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
K YD++VLPGG GAQ ++S + +LK+Q+ AICA P +L
Sbjct: 66 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALL 116
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 82/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMP--- 52
ME VI +DV+RR+G V VA + + V V I DA + + + D +P
Sbjct: 20 METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 79
Query: 53 -GATNLKESEVLESIVKKQASDGRLYAAIC----VFLAVALG------------------ 89
GA NL ES ++ I+K+Q + L AAIC LA +G
Sbjct: 80 LGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 139
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT +F +A+VE L GK A +V V++
Sbjct: 140 GHYTYSENEVEKDGLILTSRGPGTSFKFALAIVEALNGKEVAAQVKAPLVLK 191
>pdb|1J42|A Chain A, Crystal Structure Of Human Dj-1
Length = 189
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEME VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 3 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
K YD++VLPGG GAQ ++S + +LK+Q+ AICA P +L
Sbjct: 63 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALL 113
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMP--- 52
ME VI +DV+RR+G V VA + + V V I DA + + + D +P
Sbjct: 17 METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 76
Query: 53 -GATNLKESEVLESIVKKQASDGRLYAAIC----VFLAVALG------------------ 89
GA NL ES ++ I+K+Q + L AAIC LA +G
Sbjct: 77 LGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGCGSKVTTHPLAKDKMMNG 136
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 137 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
>pdb|2R1U|A Chain A, Dj-1 Activation By Catechol Quinone Modification
pdb|2R1U|B Chain B, Dj-1 Activation By Catechol Quinone Modification
Length = 187
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEME VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 2 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 61
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
K YD++VLPGG GAQ ++S + +LK+Q+ AICA P +L
Sbjct: 62 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALL 112
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMP--- 52
ME VI +DV+RR+G V VA + + V V I DA + + + D +P
Sbjct: 16 METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 75
Query: 53 -GATNLKESEVLESIVKKQASDGRLYAAIC----VFLAVALG------------------ 89
GA NL ES ++ I+K+Q + L AAIC LA +G
Sbjct: 76 LGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 135
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 136 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 187
>pdb|3SF8|B Chain B, Structural Insights Into Thiol Stabilization Of Dj-1
Length = 191
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEME VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 3 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
K YD++VLPGG GAQ ++S + +LK+Q+ AICA P +L
Sbjct: 63 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALL 113
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMP--- 52
ME VI +DV+RR+G V VA + + V V I DA + + + D +P
Sbjct: 17 METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 76
Query: 53 -GATNLKESEVLESIVKKQASDGRLYAAIC----VFLAVALG------------------ 89
GA NL ES ++ I+K+Q + L AAIC LA +G
Sbjct: 77 LGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 136
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 137 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
>pdb|1UCF|A Chain A, The Crystal Structure Of Dj-1, A Protein Related To Male
Fertility And Parkinson's Disease
pdb|1UCF|B Chain B, The Crystal Structure Of Dj-1, A Protein Related To Male
Fertility And Parkinson's Disease
pdb|1P5F|A Chain A, Crystal Structure Of Human Dj-1
pdb|1Q2U|A Chain A, Crystal Structure Of Dj-1RS AND IMPLICATION ON FAMILIAL
PARKINSON'S Disease
pdb|2OR3|A Chain A, Pre-Oxidation Complex Of Human Dj-1
pdb|2OR3|B Chain B, Pre-Oxidation Complex Of Human Dj-1
Length = 189
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEME VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 3 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
K YD++VLPGG GAQ ++S + +LK+Q+ AICA P +L
Sbjct: 63 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALL 113
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMP--- 52
ME VI +DV+RR+G V VA + + V V I DA + + + D +P
Sbjct: 17 METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 76
Query: 53 -GATNLKESEVLESIVKKQASDGRLYAAIC----VFLAVALG------------------ 89
GA NL ES ++ I+K+Q + L AAIC LA +G
Sbjct: 77 LGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 136
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 137 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
>pdb|2RK4|A Chain A, Structure Of M26i Dj-1
Length = 197
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEME VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 3 SKRALVILAKGAEEMETVIPVDVIRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
K YD++VLPGG GAQ ++S + +LK+Q+ AICA P +L
Sbjct: 63 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALL 113
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMP--- 52
ME VI +DV+RR+G V VA + + V V I DA + + + D +P
Sbjct: 17 METVIPVDVIRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 76
Query: 53 -GATNLKESEVLESIVKKQASDGRLYAAIC----VFLAVALG------------------ 89
GA NL ES ++ I+K+Q + L AAIC LA +G
Sbjct: 77 LGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 136
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 137 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
>pdb|3CY6|A Chain A, Crystal Structure Of E18q Dj-1
Length = 197
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEM+ VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 3 SKRALVILAKGAEEMQTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
K YD++VLPGG GAQ ++S + +LK+Q+ AICA P +L
Sbjct: 63 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALL 113
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 82/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMP--- 52
M+ VI +DV+RR+G V VA + + V V I DA + + + D +P
Sbjct: 17 MQTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 76
Query: 53 -GATNLKESEVLESIVKKQASDGRLYAAIC----VFLAVALG------------------ 89
GA NL ES ++ I+K+Q + L AAIC LA +G
Sbjct: 77 LGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 136
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 137 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
>pdb|2RK3|A Chain A, Structure Of A104t Dj-1
Length = 197
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEME VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 3 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
K YD++VLPGG GAQ ++S + +LK+Q+ ICA P +L
Sbjct: 63 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIATICAGPTALL 113
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMP--- 52
ME VI +DV+RR+G V VA + + V V I DA + + + D +P
Sbjct: 17 METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 76
Query: 53 -GATNLKESEVLESIVKKQASDGRLYAAIC----VFLAVALG------------------ 89
GA NL ES ++ I+K+Q + L A IC LA +G
Sbjct: 77 LGAQNLSESAAVKEILKEQENRKGLIATICAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 136
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 137 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
>pdb|3CZA|A Chain A, Crystal Structure Of E18d Dj-1
Length = 197
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEM+ VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 3 SKRALVILAKGAEEMDTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
K YD++VLPGG GAQ ++S + +LK+Q+ AICA P +L
Sbjct: 63 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALL 113
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 82/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMP--- 52
M+ VI +DV+RR+G V VA + + V V I DA + + + D +P
Sbjct: 17 MDTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 76
Query: 53 -GATNLKESEVLESIVKKQASDGRLYAAIC----VFLAVALG------------------ 89
GA NL ES ++ I+K+Q + L AAIC LA +G
Sbjct: 77 LGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 136
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 137 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
>pdb|3B38|A Chain A, Structure Of A104v Dj-1
Length = 192
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEME VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 6 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 65
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
K YD++VLPGG GAQ ++S + +LK+Q+ ICA P +L
Sbjct: 66 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAVICAGPTALL 116
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMP--- 52
ME VI +DV+RR+G V VA + + V V I DA + + + D +P
Sbjct: 20 METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 79
Query: 53 -GATNLKESEVLESIVKKQASDGRLYAAIC----VFLAVALG------------------ 89
GA NL ES ++ I+K+Q + L A IC LA +G
Sbjct: 80 LGAQNLSESAAVKEILKEQENRKGLIAVICAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 139
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 140 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 191
>pdb|3CZ9|A Chain A, Crystal Structure Of E18l Dj-1
Length = 197
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEM VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 3 SKRALVILAKGAEEMLTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
K YD++VLPGG GAQ ++S + +LK+Q+ AICA P +L
Sbjct: 63 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALL 113
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMPG-- 53
M VI +DV+RR+G V VA + + V V I DA + + + D +PG
Sbjct: 17 MLTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 76
Query: 54 --ATNLKESEVLESIVKKQASDGRLYAAIC----VFLAVALG------------------ 89
A NL ES ++ I+K+Q + L AAIC LA +G
Sbjct: 77 LGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 136
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 137 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
>pdb|3BWE|A Chain A, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|B Chain B, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|C Chain C, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|D Chain D, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|E Chain E, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|F Chain F, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|G Chain G, Crystal Structure Of Aggregated Form Of Dj1
Length = 189
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EE E VI +D+ RRA V VA +A K + S V + D +++A
Sbjct: 3 SKRALVILAKGAEEXETVIPVDVXRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
K YD++VLPGG GAQ ++S + +LK+Q+ AICA P +L
Sbjct: 63 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALL 113
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 80/171 (46%), Gaps = 34/171 (19%)
Query: 2 EAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMPG--- 53
E VI +DV RR+G V VA + + V V I DA + + + D +PG
Sbjct: 18 ETVIPVDVXRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNL 77
Query: 54 -ATNLKESEVLESIVKKQASDGRLYAAIC----VFLAVALG------------------- 89
A NL ES ++ I+K+Q + L AAIC LA +G
Sbjct: 78 GAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKXXNGG 137
Query: 90 --SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 138 HYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
>pdb|1PDV|A Chain A, Crystal Structure Of Human Dj-1, P 31 2 1 Space Group
pdb|1PDW|A Chain A, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|B Chain B, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|C Chain C, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|D Chain D, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|E Chain E, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|F Chain F, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|G Chain G, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|H Chain H, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
Length = 197
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EE E VI +D+ RRA V VA +A K + S V + D +++A
Sbjct: 3 SKRALVILAKGAEEXETVIPVDVXRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
K YD++VLPGG GAQ ++S + +LK+Q+ AICA P +L
Sbjct: 63 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALL 113
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 80/171 (46%), Gaps = 34/171 (19%)
Query: 2 EAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMPG--- 53
E VI +DV RR+G V VA + + V V I DA + + + D +PG
Sbjct: 18 ETVIPVDVXRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNL 77
Query: 54 -ATNLKESEVLESIVKKQASDGRLYAAIC----VFLAVALG------------------- 89
A NL ES ++ I+K+Q + L AAIC LA +G
Sbjct: 78 GAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKXXNGG 137
Query: 90 --SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 138 HYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
>pdb|2R1T|B Chain B, Dopamine Quinone Conjugation To Dj-1
pdb|2R1V|B Chain B, Norepinephrine Quinone Conjugation To Dj-1
Length = 187
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEME VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 2 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVIXPDASLEDAK 61
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
K YD++VLPGG GAQ ++S + +LK+Q+ AI A P +L
Sbjct: 62 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIAAGPTALL 112
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMP--- 52
ME VI +DV+RR+G V VA + + V V I DA + + + D +P
Sbjct: 16 METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVIXPDASLEDAKKEGPYDVVVLPGGN 75
Query: 53 -GATNLKESEVLESIVKKQASDGRLYAAI----CVFLAVALG------------------ 89
GA NL ES ++ I+K+Q + L AAI LA +G
Sbjct: 76 LGAQNLSESAAVKEILKEQENRKGLIAAIAAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 135
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 136 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 187
>pdb|2R1T|A Chain A, Dopamine Quinone Conjugation To Dj-1
pdb|2R1V|A Chain A, Norepinephrine Quinone Conjugation To Dj-1
Length = 187
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEME VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 2 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 61
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
K YD++VLPGG GAQ ++S + +LK+Q+ AI A P +L
Sbjct: 62 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIAAGPTALL 112
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMP--- 52
ME VI +DV+RR+G V VA + + V V I DA + + + D +P
Sbjct: 16 METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 75
Query: 53 -GATNLKESEVLESIVKKQASDGRLYAAI----CVFLAVALG------------------ 89
GA NL ES ++ I+K+Q + L AAI LA +G
Sbjct: 76 LGAQNLSESAAVKEILKEQENRKGLIAAIAAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 135
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 136 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 187
>pdb|2RK6|A Chain A, Structure Of E163k Dj-1
Length = 192
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEME VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 6 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 65
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
K YD++VLPGG GAQ ++S + +LK+Q+ AI A P +L
Sbjct: 66 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALL 116
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMPG-- 53
ME VI +DV+RR+G V VA + + V V I DA + + + D +PG
Sbjct: 20 METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 79
Query: 54 --ATNLKESEVLESIVKKQASDGRLYAAI----CVFLAVALG------------------ 89
A NL ES ++ I+K+Q + L AAI LA +G
Sbjct: 80 LGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 139
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT +F +A+VE L GK A +V V++
Sbjct: 140 GHYTYSENRVEKDGLILTSRGPGTSFKFALAIVEALNGKEVAAQVKAPLVLK 191
>pdb|1SOA|A Chain A, Human Dj-1 With Sulfinic Acid
Length = 189
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEME VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 3 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
K YD++VLPGG GAQ ++S + +LK+Q+ AI A P +L
Sbjct: 63 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALL 113
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMPG-- 53
ME VI +DV+RR+G V VA + + V V I DA + + + D +PG
Sbjct: 17 METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 76
Query: 54 --ATNLKESEVLESIVKKQASDGRLYAAI----CVFLAVALG------------------ 89
A NL ES ++ I+K+Q + L AAI LA +G
Sbjct: 77 LGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 136
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 137 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
>pdb|3SF8|A Chain A, Structural Insights Into Thiol Stabilization Of Dj-1
Length = 191
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEME VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 3 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
K YD++VLPGG GAQ ++S + +LK+Q+ AI A P +L
Sbjct: 63 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALL 113
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMPG-- 53
ME VI +DV+RR+G V VA + + V V I DA + + + D +PG
Sbjct: 17 METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 76
Query: 54 --ATNLKESEVLESIVKKQASDGRLYAAI----CVFLAVALG------------------ 89
A NL ES ++ I+K+Q + L AAI LA +G
Sbjct: 77 LGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 136
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 137 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
>pdb|3EZG|A Chain A, Crystal Structure Of E18q Dj-1 With Oxidized C106
Length = 196
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEM+ VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 3 SKRALVILAKGAEEMQTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
K YD++VLPGG GAQ ++S + +LK+Q+ AI A P +L
Sbjct: 63 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALL 113
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMPG-- 53
M+ VI +DV+RR+G V VA + + V V I DA + + + D +PG
Sbjct: 17 MQTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 76
Query: 54 --ATNLKESEVLESIVKKQASDGRLYAAI----CVFLAVALG------------------ 89
A NL ES ++ I+K+Q + L AAI LA +G
Sbjct: 77 LGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 136
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 137 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
>pdb|3F71|A Chain A, Crystal Structure Of E18d Dj-1 With Oxidized C106
Length = 196
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEM+ VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 3 SKRALVILAKGAEEMDTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
K YD++VLPGG GAQ ++S + +LK+Q+ AI A P +L
Sbjct: 63 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALL 113
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMPG-- 53
M+ VI +DV+RR+G V VA + + V V I DA + + + D +PG
Sbjct: 17 MDTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 76
Query: 54 --ATNLKESEVLESIVKKQASDGRLYAAI----CVFLAVALG------------------ 89
A NL ES ++ I+K+Q + L AAI LA +G
Sbjct: 77 LGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 136
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 137 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
>pdb|3CYF|A Chain A, Crystal Structure Of E18n Dj-1
Length = 197
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAA 219
S + LV +A G+EEM VI +D++RRA V VA +A K + S V + D +++A
Sbjct: 3 SKRALVILAKGAEEMNTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK 62
Query: 220 KLS-YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
K YD++VLPGG GAQ ++S + +LK+Q+ AI A P +L
Sbjct: 63 KEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALL 113
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 80/172 (46%), Gaps = 34/172 (19%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR-----DACGMPG-- 53
M VI +DV+RR+G V VA + + V V I DA + + + D +PG
Sbjct: 17 MNTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 76
Query: 54 --ATNLKESEVLESIVKKQASDGRLYAAI----CVFLAVALG------------------ 89
A NL ES ++ I+K+Q + L AAI LA +G
Sbjct: 77 LGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 136
Query: 90 ---SWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMR 138
++ + KDG ++T+RGPGT EF +A+VE L GK A +V V++
Sbjct: 137 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
>pdb|3L3B|A Chain A, Crystal Structure Of Isoprenoid Biosynthesis Protein With
Amidotransferase-Like Domain From Ehrlichia Chaffeensis
At 1.90a Resolution
pdb|3L3B|B Chain B, Crystal Structure Of Isoprenoid Biosynthesis Protein With
Amidotransferase-Like Domain From Ehrlichia Chaffeensis
At 1.90a Resolution
Length = 242
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 11/58 (18%)
Query: 223 YDLIVLPGGLGGAQAFA------KSKKLV-----NMLKKQKESNRPYGAICASPALVL 269
+D++V+PGG G A+ F+ K + N +++ + +P GA+C SPA+V+
Sbjct: 108 FDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVV 165
>pdb|1OI4|A Chain A, Crystal Structure Of Yhbo From Escherichia Coli
pdb|1OI4|B Chain B, Crystal Structure Of Yhbo From Escherichia Coli
Length = 193
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 2/111 (1%)
Query: 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVV-VASVADKLEILASCQVKLVADMLIDEA 218
S +I V I + E+ E D R+A V+ + A K + + D IDE
Sbjct: 23 SKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEV 82
Query: 219 AKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVL 269
+D ++LPGG + V + S +P AIC P L++
Sbjct: 83 TPAEFDALLLPGG-HSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLI 132
>pdb|4GE0|A Chain A, Schizosaccharomyces Pombe Dj-1 T114p Mutant
pdb|4GE0|B Chain B, Schizosaccharomyces Pombe Dj-1 T114p Mutant
pdb|4GE0|C Chain C, Schizosaccharomyces Pombe Dj-1 T114p Mutant
pdb|4GE0|D Chain D, Schizosaccharomyces Pombe Dj-1 T114p Mutant
Length = 194
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 14/110 (12%)
Query: 167 IANGSEEMEAVIIIDILRRAKA---NVVVASVADKL-------EILASCQVKLVADMLID 216
+A+G++E+E I +RA+ +V V D+L E+ A+ K + D
Sbjct: 11 VADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSA--D 68
Query: 217 EAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKK-QKESNRPYGAICASP 265
+ AK YD+ ++PGG GA+ + + + ++K+ K+ N+ G I A P
Sbjct: 69 DFAK-QYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIXAGP 117
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 102 VVTTRGPGTPMEFVVALVEQLYGKGKADEV 131
++T++GPGT M F + L+EQ+ K K + V
Sbjct: 158 LITSQGPGTAMLFGLKLLEQVASKDKYNAV 187
>pdb|1G2I|A Chain A, Crystal Structure Of A Novel Intracellular Protease From
Pyrococcus Horikoshii At 2 A Resolution
pdb|1G2I|B Chain B, Crystal Structure Of A Novel Intracellular Protease From
Pyrococcus Horikoshii At 2 A Resolution
pdb|1G2I|C Chain C, Crystal Structure Of A Novel Intracellular Protease From
Pyrococcus Horikoshii At 2 A Resolution
Length = 166
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 14/129 (10%)
Query: 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCR----DACGMPGA-- 54
+E + L+ G +V +AS E+ + HG + D DA +PG
Sbjct: 14 VELIYPYHRLKEEGHEVYIASFERGT-ITGKHGYSVKVDLTFDKVNPEEFDALVLPGGRA 72
Query: 55 -TNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLKDGKVVTTRGPGTPME 113
++ +E SI +K S+G+ A+IC + + + G+L+G K T PG +
Sbjct: 73 PERVRLNEKAVSIARKXFSEGKPVASICHGPQILISA-GVLRGRK-----GTSYPGIKDD 126
Query: 114 FVVALVEQL 122
+ A VE +
Sbjct: 127 XINAGVEWV 135
>pdb|4GDH|A Chain A, Schizosaccharomyces Pombe Dj-1
pdb|4GDH|B Chain B, Schizosaccharomyces Pombe Dj-1
pdb|4GDH|C Chain C, Schizosaccharomyces Pombe Dj-1
pdb|4GDH|D Chain D, Schizosaccharomyces Pombe Dj-1
Length = 194
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 14/108 (12%)
Query: 167 IANGSEEMEAVIIIDILRRAKA---NVVVASVADKL-------EILASCQVKLVADMLID 216
+A+G++E+E I +RA+ +V V D+L E+ A+ K + D
Sbjct: 11 VADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSA--D 68
Query: 217 EAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKK-QKESNRPYGAICA 263
+ AK YD+ ++PGG GA+ + + + ++K+ K+ N+ G I A
Sbjct: 69 DFAK-QYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIXA 115
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 102 VVTTRGPGTPMEFVVALVEQLYGKGKADEV 131
++T++GPGT M F + L+EQ+ K K + V
Sbjct: 158 LITSQGPGTAMLFGLKLLEQVASKDKYNAV 187
>pdb|4GE3|A Chain A, Schizosaccharomyces Pombe Dj-1 T114v Mutant
pdb|4GE3|B Chain B, Schizosaccharomyces Pombe Dj-1 T114v Mutant
pdb|4GE3|C Chain C, Schizosaccharomyces Pombe Dj-1 T114v Mutant
pdb|4GE3|D Chain D, Schizosaccharomyces Pombe Dj-1 T114v Mutant
Length = 194
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 14/108 (12%)
Query: 167 IANGSEEMEAVIIIDILRRAKA---NVVVASVADKL-------EILASCQVKLVADMLID 216
+A+G++E+E I +RA+ +V V D+L E+ A+ K + D
Sbjct: 11 VADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSA--D 68
Query: 217 EAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKK-QKESNRPYGAICA 263
+ AK YD+ ++PGG GA+ + + + ++K+ K+ N+ G I A
Sbjct: 69 DFAK-QYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIXA 115
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 102 VVTTRGPGTPMEFVVALVEQLYGKGKADEV 131
++T++GPGT M F + L+EQ+ K K + V
Sbjct: 158 LITSQGPGTAMLFGLKLLEQVASKDKYNAV 187
>pdb|2FEX|A Chain A, The Crystal Structure Of Dj-1 Superfamily Protein Atu0886
From Agrobacterium Tumefaciens
pdb|2FEX|B Chain B, The Crystal Structure Of Dj-1 Superfamily Protein Atu0886
From Agrobacterium Tumefaciens
pdb|2FEX|C Chain C, The Crystal Structure Of Dj-1 Superfamily Protein Atu0886
From Agrobacterium Tumefaciens
Length = 188
Score = 30.4 bits (67), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKL 221
+I + +A + E ++ R +V + D + + +K+ D D +
Sbjct: 3 RIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGXPVTSXGGLKVTPDTSYDALDPV 62
Query: 222 SYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICAS 264
D +V+PGGL + A L ++K+ ++ +R ICA+
Sbjct: 63 DIDALVIPGGLSWEKGTA--ADLGGLVKRFRDRDRLVAGICAA 103
>pdb|3MGK|A Chain A, Crystal Structure Of Probable ProteaseAMIDASE FROM
Clostridium Acetobutylicum Atcc 824
pdb|3MGK|B Chain B, Crystal Structure Of Probable ProteaseAMIDASE FROM
Clostridium Acetobutylicum Atcc 824
Length = 211
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 95 KGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVS 132
+ +KDG + T+ G ++ + +E L GK KA E+S
Sbjct: 145 RWVKDGNIYTSSGVSAGIDMTLGFIEDLIGKEKALEIS 182
>pdb|3UK7|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dj-1d
pdb|3UK7|B Chain B, Crystal Structure Of Arabidopsis Thaliana Dj-1d
pdb|3UK7|C Chain C, Crystal Structure Of Arabidopsis Thaliana Dj-1d
Length = 396
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 215 IDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAI 261
D+ SYD +V+PGG + A ++ ++N++K+ S +P +I
Sbjct: 275 FDDLVSSSYDALVIPGGR-APEYLALNEHVLNIVKEFXNSEKPVASI 320
>pdb|3N7T|A Chain A, Crystal Structure Of A Macrophage Binding Protein From
Cocci Immitis
Length = 247
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 219 AKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALV 268
A Y L+ + GG G F +K L N+ + + GA+C PA++
Sbjct: 102 APHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAML 151
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|M Chain M, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|EE Chain e, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|MM Chain m, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|E Chain E, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|M Chain M, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|EE Chain e, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|MM Chain m, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 562
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 182 ILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKS 241
+LR AK ++ V+ + A V+ V +++ + + +DLI + G +GG+
Sbjct: 180 LLRAAKTSLGSKIVSKDHDRFAEMAVEAVINVMDKDRKDVDFDLIKMQGRVGGS---ISD 236
Query: 242 KKLVNMLKKQKESNRPYGAICASP 265
KL+N + K+ + P C P
Sbjct: 237 SKLINGVILDKDFSHPQMPKCVLP 260
>pdb|3PS5|A Chain A, Crystal Structure Of The Full-Length Human Protein
Tyrosine Phosphatase Shp-1
Length = 595
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 10/122 (8%)
Query: 147 IAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQ 206
+ + N Q + ++ I+V + G +I+ID+L N+ + ++I + Q
Sbjct: 433 LDQINQRQESLPHAGPIIVHSSAGIGRTGTIIVIDML---MENISTKGLDCDIDIQKTIQ 489
Query: 207 -VKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASP 265
V+ ++ A+ + + + AQ +KK + +L+ QK YG I P
Sbjct: 490 MVRAQRSGMVQTEAQYKFIYVAI------AQFIETTKKKLEVLQSQKGQESEYGNITYPP 543
Query: 266 AL 267
A+
Sbjct: 544 AM 545
>pdb|2YWJ|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Methanocaldococcus Jannaschii
Length = 186
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 224 DLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKV 277
D +++PGG + A K K +L+K K SN P CA L+ + G+ ++
Sbjct: 39 DALIIPGG--ESTAIGKLMKKYGLLEKIKNSNLPILGTCAGMVLLSKGTGINQI 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,765,174
Number of Sequences: 62578
Number of extensions: 304446
Number of successful extensions: 857
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 711
Number of HSP's gapped (non-prelim): 101
length of query: 277
length of database: 14,973,337
effective HSP length: 98
effective length of query: 179
effective length of database: 8,840,693
effective search space: 1582484047
effective search space used: 1582484047
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)