Query 023800
Match_columns 277
No_of_seqs 332 out of 3016
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 06:45:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023800.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023800hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2764 Putative transcription 100.0 3.8E-30 8.3E-35 208.6 13.3 196 1-232 19-247 (247)
2 PRK11574 oxidative-stress-resi 99.9 3E-24 6.5E-29 178.0 15.0 142 1-142 16-192 (196)
3 TIGR01383 not_thiJ DJ-1 family 99.9 3.2E-24 7E-29 175.2 13.6 132 1-133 13-178 (179)
4 cd03137 GATase1_AraC_1 AraC tr 99.9 2.9E-24 6.3E-29 176.7 13.0 134 1-137 12-186 (187)
5 cd03138 GATase1_AraC_2 AraC tr 99.9 9.8E-24 2.1E-28 174.7 13.1 135 2-138 13-195 (195)
6 cd03132 GATase1_catalase Type 99.9 1.5E-23 3.2E-28 165.0 12.9 114 160-275 1-114 (142)
7 cd03139 GATase1_PfpI_2 Type 1 99.9 9.5E-24 2.1E-28 173.0 12.3 135 1-138 12-183 (183)
8 cd03136 GATase1_AraC_ArgR_like 99.9 1.1E-23 2.4E-28 173.0 12.4 134 1-138 12-185 (185)
9 TIGR01383 not_thiJ DJ-1 family 99.9 1.7E-22 3.7E-27 165.0 13.5 114 162-276 1-116 (179)
10 cd03135 GATase1_DJ-1 Type 1 gl 99.9 2.8E-22 6E-27 161.1 13.6 112 163-276 1-113 (163)
11 cd03135 GATase1_DJ-1 Type 1 gl 99.9 2.2E-22 4.7E-27 161.8 12.7 120 1-122 12-163 (163)
12 COG4977 Transcriptional regula 99.9 9E-22 2E-26 171.9 14.9 155 15-186 45-232 (328)
13 cd03134 GATase1_PfpI_like A ty 99.9 8.5E-22 1.8E-26 158.8 11.7 112 162-276 1-114 (165)
14 TIGR01382 PfpI intracellular p 99.9 1.3E-21 2.9E-26 157.8 12.3 112 162-276 1-112 (166)
15 PRK11574 oxidative-stress-resi 99.9 2.7E-21 5.9E-26 160.2 14.4 118 159-276 1-120 (196)
16 TIGR01382 PfpI intracellular p 99.9 1.6E-21 3.4E-26 157.4 12.1 119 1-122 13-165 (166)
17 cd03147 GATase1_Ydr533c_like T 99.8 1.3E-21 2.8E-26 165.2 7.6 121 1-122 25-231 (231)
18 cd03140 GATase1_PfpI_3 Type 1 99.8 1E-20 2.2E-25 153.4 12.2 118 1-123 12-167 (170)
19 PRK09393 ftrA transcriptional 99.8 1.7E-20 3.7E-25 167.1 13.8 137 1-141 23-200 (322)
20 cd03134 GATase1_PfpI_like A ty 99.8 9.8E-21 2.1E-25 152.6 11.2 117 1-120 13-164 (165)
21 cd03140 GATase1_PfpI_3 Type 1 99.8 9.6E-21 2.1E-25 153.5 10.7 110 163-276 1-111 (170)
22 PF13278 DUF4066: Putative ami 99.8 1.1E-20 2.5E-25 152.4 11.0 116 2-120 10-166 (166)
23 cd03137 GATase1_AraC_1 AraC tr 99.8 1.3E-20 2.8E-25 155.0 11.4 109 163-276 1-116 (187)
24 cd03169 GATase1_PfpI_1 Type 1 99.8 2.9E-20 6.2E-25 152.1 11.9 120 1-122 13-180 (180)
25 cd03169 GATase1_PfpI_1 Type 1 99.8 3.2E-20 7E-25 151.8 11.9 113 162-276 1-128 (180)
26 cd03138 GATase1_AraC_2 AraC tr 99.8 2.8E-20 6.1E-25 154.0 10.8 110 163-276 1-124 (195)
27 cd03139 GATase1_PfpI_2 Type 1 99.8 2.1E-20 4.5E-25 153.1 9.4 109 163-276 1-114 (183)
28 cd03136 GATase1_AraC_ArgR_like 99.8 4.7E-20 1E-24 151.4 10.8 108 163-276 1-115 (185)
29 PF01965 DJ-1_PfpI: DJ-1/PfpI 99.8 3.7E-20 8E-25 146.5 9.7 107 16-123 1-147 (147)
30 cd03148 GATase1_EcHsp31_like T 99.8 3.4E-20 7.4E-25 156.7 9.0 121 1-122 26-231 (232)
31 PF13278 DUF4066: Putative ami 99.8 1.8E-19 3.9E-24 145.4 11.6 106 166-276 1-113 (166)
32 COG0693 ThiJ Putative intracel 99.8 1.9E-19 4.1E-24 148.2 11.8 116 160-276 2-120 (188)
33 cd03141 GATase1_Hsp31_like Typ 99.8 6.4E-20 1.4E-24 154.6 9.2 121 1-122 23-221 (221)
34 PRK04155 chaperone protein Hch 99.8 1E-19 2.2E-24 157.9 10.0 122 1-124 77-283 (287)
35 PRK09393 ftrA transcriptional 99.8 2.4E-19 5.1E-24 159.7 12.3 112 159-276 8-126 (322)
36 PRK11780 isoprenoid biosynthes 99.8 4.8E-19 1E-23 148.1 12.0 111 161-272 2-144 (217)
37 PRK11249 katE hydroperoxidase 99.8 5.7E-18 1.2E-22 161.8 15.9 116 159-276 596-711 (752)
38 cd03147 GATase1_Ydr533c_like T 99.8 1.6E-18 3.5E-23 146.5 8.9 107 169-276 20-154 (231)
39 COG0693 ThiJ Putative intracel 99.8 1.2E-17 2.5E-22 137.5 12.7 125 1-126 16-186 (188)
40 cd03148 GATase1_EcHsp31_like T 99.7 6.6E-18 1.4E-22 142.8 9.2 107 166-274 18-147 (232)
41 PRK04155 chaperone protein Hch 99.7 1.9E-17 4.1E-22 143.7 11.9 112 160-273 49-197 (287)
42 cd03141 GATase1_Hsp31_like Typ 99.7 4.6E-18 9.9E-23 143.3 7.6 104 168-273 17-140 (221)
43 cd03133 GATase1_ES1 Type 1 glu 99.7 2.3E-17 5E-22 137.1 10.7 105 168-273 11-142 (213)
44 COG4977 Transcriptional regula 99.7 7.1E-17 1.5E-21 141.3 10.5 114 159-277 9-129 (328)
45 cd03132 GATase1_catalase Type 99.7 4.7E-16 1E-20 122.2 12.1 116 2-123 16-139 (142)
46 KOG2764 Putative transcription 99.7 1.1E-16 2.3E-21 130.5 8.6 116 160-275 5-120 (247)
47 PF01965 DJ-1_PfpI: DJ-1/PfpI 99.7 2.5E-16 5.5E-21 124.5 9.5 87 189-276 1-91 (147)
48 cd03133 GATase1_ES1 Type 1 glu 99.6 8E-16 1.7E-20 127.9 9.5 96 1-98 17-147 (213)
49 PRK11780 isoprenoid biosynthes 99.6 3.6E-15 7.8E-20 124.7 9.7 96 1-98 20-150 (217)
50 PRK03619 phosphoribosylformylg 99.3 3E-11 6.4E-16 101.6 11.5 92 161-276 1-99 (219)
51 PRK01175 phosphoribosylformylg 99.2 2.5E-10 5.3E-15 98.1 10.9 98 160-276 3-109 (261)
52 PRK11249 katE hydroperoxidase 99.2 3.5E-10 7.5E-15 108.9 12.7 116 2-122 612-735 (752)
53 TIGR01737 FGAM_synth_I phospho 99.1 1.5E-09 3.2E-14 91.9 11.4 92 161-276 1-98 (227)
54 cd01653 GATase1 Type 1 glutami 99.1 1.6E-09 3.5E-14 79.5 10.2 92 163-269 1-92 (115)
55 cd01740 GATase1_FGAR_AT Type 1 99.0 3.1E-09 6.8E-14 90.5 8.8 95 163-276 1-102 (238)
56 cd03128 GAT_1 Type 1 glutamine 98.8 1.9E-08 4.1E-13 70.5 7.5 90 163-266 1-90 (92)
57 COG0047 PurL Phosphoribosylfor 98.8 4.3E-08 9.3E-13 80.8 9.6 94 160-276 2-101 (231)
58 COG3155 ElbB Uncharacterized p 98.7 3.1E-08 6.6E-13 76.9 7.1 111 160-271 1-143 (217)
59 PRK13527 glutamine amidotransf 98.7 8.6E-08 1.9E-12 79.6 10.3 92 161-272 1-93 (200)
60 PRK13526 glutamine amidotransf 98.6 1.5E-07 3.3E-12 75.9 8.1 83 161-271 3-87 (179)
61 TIGR03800 PLP_synth_Pdx2 pyrid 98.6 2.4E-07 5.2E-12 75.8 8.3 85 162-272 1-86 (184)
62 PF13507 GATase_5: CobB/CobQ-l 98.6 2.3E-07 4.9E-12 79.7 8.4 98 161-276 2-110 (259)
63 cd03130 GATase1_CobB Type 1 gl 98.4 1.1E-06 2.3E-11 72.9 8.4 76 177-272 14-91 (198)
64 PRK13525 glutamine amidotransf 98.4 1.7E-06 3.6E-11 71.2 9.0 86 161-272 2-88 (189)
65 cd01740 GATase1_FGAR_AT Type 1 98.4 2.3E-06 4.9E-11 73.0 8.9 83 5-98 14-105 (238)
66 PRK08250 glutamine amidotransf 98.3 5E-06 1.1E-10 70.7 9.9 94 161-272 1-100 (235)
67 PRK03619 phosphoribosylformylg 98.3 3.3E-06 7.2E-11 71.0 8.3 75 7-97 18-101 (219)
68 PRK13143 hisH imidazole glycer 98.3 7.4E-06 1.6E-10 68.0 9.8 87 161-272 1-87 (200)
69 cd01750 GATase1_CobQ Type 1 gl 98.3 5.6E-06 1.2E-10 68.4 8.9 87 163-273 1-89 (194)
70 PRK07053 glutamine amidotransf 98.2 1.2E-05 2.6E-10 68.4 10.0 96 159-272 1-99 (234)
71 PLN02832 glutamine amidotransf 98.2 1.1E-05 2.4E-10 68.7 8.7 87 160-272 1-88 (248)
72 PRK01077 cobyrinic acid a,c-di 98.1 2E-05 4.3E-10 73.5 10.4 90 161-271 246-337 (451)
73 cd01749 GATase1_PB Glutamine A 98.1 1.4E-05 3E-10 65.4 7.6 84 163-272 1-85 (183)
74 cd01741 GATase1_1 Subgroup of 98.0 2.9E-05 6.2E-10 63.7 8.7 92 162-272 1-97 (188)
75 TIGR01857 FGAM-synthase phosph 98.0 4E-05 8.6E-10 78.3 10.4 105 159-275 976-1093(1239)
76 TIGR01737 FGAM_synth_I phospho 97.9 5.5E-05 1.2E-09 64.1 8.5 75 6-96 17-99 (227)
77 PRK13141 hisH imidazole glycer 97.9 5.8E-05 1.3E-09 62.8 8.5 85 163-272 2-88 (205)
78 PLN03206 phosphoribosylformylg 97.9 7.9E-05 1.7E-09 76.7 11.0 99 159-276 1036-1146(1307)
79 cd01744 GATase1_CPSase Small c 97.9 8.3E-05 1.8E-09 60.5 8.7 73 179-271 12-84 (178)
80 TIGR01735 FGAM_synt phosphorib 97.9 7.3E-05 1.6E-09 77.3 10.2 99 159-276 1054-1165(1310)
81 PRK01175 phosphoribosylformylg 97.9 6E-05 1.3E-09 65.0 8.1 82 5-97 19-111 (261)
82 PRK06490 glutamine amidotransf 97.8 0.00013 2.8E-09 62.3 9.5 96 159-272 6-102 (239)
83 PRK05297 phosphoribosylformylg 97.8 0.00014 3.1E-09 75.4 10.9 96 159-273 1034-1141(1290)
84 PHA03366 FGAM-synthase; Provis 97.8 0.00016 3.6E-09 74.8 11.2 98 159-275 1027-1136(1304)
85 PRK06895 putative anthranilate 97.8 0.00014 2.9E-09 59.9 8.5 87 161-272 2-88 (190)
86 PRK05665 amidotransferase; Pro 97.8 0.00025 5.5E-09 60.5 10.0 51 221-272 56-107 (240)
87 COG1797 CobB Cobyrinic acid a, 97.7 0.00059 1.3E-08 62.0 12.6 143 101-271 190-338 (451)
88 CHL00188 hisH imidazole glycer 97.7 0.00021 4.6E-09 59.7 8.8 86 161-272 2-90 (210)
89 TIGR01739 tegu_FGAM_synt herpe 97.7 0.00028 6.2E-09 72.7 11.1 98 159-275 928-1037(1202)
90 PF07685 GATase_3: CobB/CobQ-l 97.7 6.3E-05 1.4E-09 60.0 5.1 51 220-271 5-57 (158)
91 PRK13146 hisH imidazole glycer 97.7 0.00029 6.2E-09 58.9 8.8 88 160-273 1-94 (209)
92 cd01653 GATase1 Type 1 glutami 97.6 0.00036 7.8E-09 50.5 7.6 88 2-112 13-103 (115)
93 TIGR00379 cobB cobyrinic acid 97.6 0.00048 1E-08 64.3 9.9 91 161-272 245-337 (449)
94 cd01748 GATase1_IGP_Synthase T 97.6 0.00024 5.3E-09 58.8 7.1 75 176-272 11-87 (198)
95 cd03130 GATase1_CobB Type 1 gl 97.5 0.00024 5.3E-09 58.8 6.4 73 6-93 16-93 (198)
96 TIGR00888 guaA_Nterm GMP synth 97.5 0.00045 9.7E-09 56.7 7.9 76 176-272 11-86 (188)
97 PRK09065 glutamine amidotransf 97.5 0.00083 1.8E-08 57.3 9.5 96 160-272 1-104 (237)
98 PRK07765 para-aminobenzoate sy 97.5 0.00079 1.7E-08 56.5 8.9 79 177-272 14-92 (214)
99 COG0311 PDX2 Predicted glutami 97.4 0.00077 1.7E-08 54.1 7.7 85 161-271 1-87 (194)
100 COG0118 HisH Glutamine amidotr 97.4 0.001 2.2E-08 54.4 8.6 88 160-273 1-91 (204)
101 PRK00784 cobyric acid synthase 97.4 0.0006 1.3E-08 64.3 8.1 87 161-272 252-341 (488)
102 PRK08007 para-aminobenzoate sy 97.4 0.00089 1.9E-08 54.9 8.0 87 165-272 2-88 (187)
103 PF00117 GATase: Glutamine ami 97.3 0.00038 8.3E-09 57.1 5.2 79 176-272 10-88 (192)
104 PRK05670 anthranilate synthase 97.3 0.0017 3.7E-08 53.3 8.6 86 166-272 3-88 (189)
105 cd01745 GATase1_2 Subgroup of 97.3 0.0011 2.3E-08 54.5 7.3 81 177-272 22-116 (189)
106 TIGR01855 IMP_synth_hisH imida 97.3 0.0013 2.8E-08 54.3 7.7 75 176-272 11-87 (196)
107 PF01174 SNO: SNO glutamine am 97.2 0.00027 5.9E-09 57.1 3.4 50 221-271 32-83 (188)
108 TIGR00566 trpG_papA glutamine 97.2 0.0018 4E-08 53.1 8.5 86 166-272 3-88 (188)
109 PRK07567 glutamine amidotransf 97.2 0.0022 4.7E-08 54.8 9.0 96 161-272 2-109 (242)
110 PLN02335 anthranilate synthase 97.2 0.0026 5.7E-08 53.6 9.4 91 159-272 17-107 (222)
111 PRK06774 para-aminobenzoate sy 97.2 0.0023 5E-08 52.6 8.7 87 165-272 2-88 (191)
112 PRK13181 hisH imidazole glycer 97.2 0.0028 6.1E-08 52.4 8.9 85 163-272 2-88 (199)
113 PRK12564 carbamoyl phosphate s 97.2 0.002 4.3E-08 58.2 8.5 87 161-272 178-264 (360)
114 TIGR03800 PLP_synth_Pdx2 pyrid 97.2 0.00073 1.6E-08 55.3 5.1 72 5-91 13-86 (184)
115 PRK13170 hisH imidazole glycer 97.1 0.0024 5.3E-08 52.8 7.7 83 161-272 1-86 (196)
116 PRK08857 para-aminobenzoate sy 97.1 0.0033 7.2E-08 51.8 8.3 87 165-272 2-88 (193)
117 cd03144 GATase1_ScBLP_like Typ 97.0 0.0025 5.4E-08 47.7 6.6 86 162-266 1-88 (114)
118 cd01742 GATase1_GMP_Synthase T 97.0 0.0026 5.5E-08 51.7 7.3 75 177-272 12-86 (181)
119 PRK13526 glutamine amidotransf 97.0 0.00095 2.1E-08 54.0 4.3 40 49-91 47-88 (179)
120 cd01743 GATase1_Anthranilate_S 97.0 0.0035 7.5E-08 51.2 7.8 75 178-272 13-87 (184)
121 PLN02617 imidazole glycerol ph 97.0 0.0069 1.5E-07 57.5 10.8 88 160-272 6-95 (538)
122 cd03128 GAT_1 Type 1 glutamine 97.0 0.0026 5.6E-08 43.7 6.1 74 3-85 14-90 (92)
123 PRK07649 para-aminobenzoate/an 97.0 0.0039 8.5E-08 51.5 8.0 87 165-272 2-88 (195)
124 CHL00101 trpG anthranilate syn 97.0 0.0043 9.4E-08 51.0 8.2 76 177-272 13-88 (190)
125 COG0518 GuaA GMP synthase - Gl 97.0 0.0065 1.4E-07 50.2 9.1 77 177-271 15-94 (198)
126 PRK05637 anthranilate synthase 96.9 0.0059 1.3E-07 51.0 8.8 74 178-272 16-89 (208)
127 cd03146 GAT1_Peptidase_E Type 96.9 0.012 2.5E-07 49.3 10.1 95 160-272 31-130 (212)
128 PRK05380 pyrG CTP synthetase; 96.9 0.016 3.5E-07 54.5 11.9 149 99-271 231-387 (533)
129 PF09825 BPL_N: Biotin-protein 96.8 0.0068 1.5E-07 54.7 8.9 90 161-266 1-93 (367)
130 PRK00758 GMP synthase subunit 96.8 0.0059 1.3E-07 49.8 7.9 68 179-272 15-83 (184)
131 CHL00197 carA carbamoyl-phosph 96.8 0.01 2.2E-07 53.9 10.0 88 160-272 192-279 (382)
132 PRK13566 anthranilate synthase 96.8 0.0092 2E-07 58.7 10.3 90 159-272 525-614 (720)
133 TIGR01368 CPSaseIIsmall carbam 96.8 0.01 2.2E-07 53.5 9.5 86 161-272 174-259 (358)
134 PRK13896 cobyrinic acid a,c-di 96.7 0.0046 9.9E-08 57.2 7.2 88 161-271 234-323 (433)
135 TIGR01815 TrpE-clade3 anthrani 96.7 0.011 2.4E-07 58.1 9.9 90 159-272 515-604 (717)
136 PRK12838 carbamoyl phosphate s 96.7 0.0075 1.6E-07 54.3 8.0 86 161-272 168-253 (354)
137 PRK13152 hisH imidazole glycer 96.7 0.0074 1.6E-07 50.1 7.4 73 178-272 14-89 (201)
138 PRK14004 hisH imidazole glycer 96.6 0.0057 1.2E-07 51.1 6.3 84 163-272 2-88 (210)
139 PRK13142 hisH imidazole glycer 96.6 0.012 2.7E-07 48.3 7.9 84 163-273 2-87 (192)
140 PRK01077 cobyrinic acid a,c-di 96.5 0.0063 1.4E-07 56.9 6.6 70 7-91 264-338 (451)
141 PRK13525 glutamine amidotransf 96.5 0.0063 1.4E-07 50.0 5.7 68 7-91 17-88 (189)
142 PRK13143 hisH imidazole glycer 96.4 0.0051 1.1E-07 51.0 4.8 72 4-92 14-88 (200)
143 PRK06278 cobyrinic acid a,c-di 96.4 0.0091 2E-07 55.9 6.8 47 221-272 35-81 (476)
144 cd01750 GATase1_CobQ Type 1 gl 96.4 0.0095 2.1E-07 49.1 6.2 74 6-93 15-90 (194)
145 TIGR00337 PyrG CTP synthase. C 96.4 0.068 1.5E-06 50.4 12.4 147 99-270 232-386 (525)
146 PRK13527 glutamine amidotransf 96.3 0.01 2.3E-07 49.1 6.3 71 6-91 19-93 (200)
147 PLN02327 CTP synthase 96.2 0.099 2.1E-06 49.5 12.3 156 99-270 238-405 (557)
148 PF13507 GATase_5: CobB/CobQ-l 96.1 0.0086 1.9E-07 51.6 4.8 89 6-96 18-111 (259)
149 PRK11366 puuD gamma-glutamyl-g 96.1 0.039 8.5E-07 47.5 8.9 51 221-272 60-123 (254)
150 PRK05282 (alpha)-aspartyl dipe 96.1 0.048 1E-06 46.2 9.0 95 160-272 31-129 (233)
151 COG0047 PurL Phosphoribosylfor 96.0 0.035 7.5E-07 46.3 7.6 35 61-96 68-102 (231)
152 PRK08250 glutamine amidotransf 96.0 0.026 5.6E-07 48.0 7.1 74 7-91 18-100 (235)
153 PLN02347 GMP synthetase 95.9 0.043 9.2E-07 52.3 8.9 90 162-272 12-102 (536)
154 PLN02771 carbamoyl-phosphate s 95.9 0.036 7.8E-07 50.8 8.0 75 177-272 252-326 (415)
155 TIGR00313 cobQ cobyric acid sy 95.9 0.013 2.7E-07 55.2 5.1 50 221-271 283-334 (475)
156 PRK09522 bifunctional glutamin 95.8 0.05 1.1E-06 51.8 8.9 89 166-272 5-93 (531)
157 COG0504 PyrG CTP synthase (UTP 95.7 0.28 6.2E-06 45.5 12.9 184 59-266 148-383 (533)
158 COG0512 PabA Anthranilate/para 95.7 0.086 1.9E-06 42.9 8.5 87 165-272 4-90 (191)
159 cd01746 GATase1_CTP_Synthase T 95.7 0.018 3.8E-07 49.0 4.7 46 221-271 54-99 (235)
160 PRK13141 hisH imidazole glycer 95.5 0.016 3.5E-07 48.1 4.1 71 4-91 13-88 (205)
161 cd01747 GATase1_Glutamyl_Hydro 95.4 0.05 1.1E-06 47.4 6.8 79 178-271 24-107 (273)
162 cd01749 GATase1_PB Glutamine A 95.4 0.03 6.6E-07 45.7 5.2 70 7-93 14-87 (183)
163 KOG3179 Predicted glutamine sy 95.3 0.16 3.4E-06 41.7 8.6 97 159-272 3-109 (245)
164 PRK14607 bifunctional glutamin 95.3 0.072 1.6E-06 50.9 7.9 87 165-272 2-89 (534)
165 COG0505 CarA Carbamoylphosphat 95.0 0.1 2.3E-06 46.4 7.5 75 178-272 192-266 (368)
166 cd01748 GATase1_IGP_Synthase T 94.8 0.049 1.1E-06 45.0 4.7 69 5-91 13-87 (198)
167 PRK06186 hypothetical protein; 94.7 0.05 1.1E-06 45.9 4.5 86 162-266 3-93 (229)
168 cd01741 GATase1_1 Subgroup of 94.6 0.12 2.5E-06 42.2 6.4 31 60-91 67-97 (188)
169 PRK07053 glutamine amidotransf 94.4 0.22 4.8E-06 42.3 7.9 76 6-92 19-100 (234)
170 PF13587 DJ-1_PfpI_N: N-termin 94.3 0.092 2E-06 31.1 3.8 18 170-187 21-38 (38)
171 COG3442 Predicted glutamine am 94.3 0.17 3.7E-06 42.0 6.5 50 221-271 51-102 (250)
172 cd01744 GATase1_CPSase Small c 94.2 0.22 4.9E-06 40.3 7.3 71 6-91 12-85 (178)
173 PRK00074 guaA GMP synthase; Re 94.1 0.28 6E-06 46.7 8.7 88 161-272 4-91 (511)
174 PLN02832 glutamine amidotransf 94.1 0.091 2E-06 44.9 4.8 73 6-92 16-89 (248)
175 cd03129 GAT1_Peptidase_E_like 93.7 0.78 1.7E-05 38.1 9.8 98 161-272 30-130 (210)
176 PF03575 Peptidase_S51: Peptid 93.7 0.12 2.5E-06 40.9 4.6 81 178-273 4-86 (154)
177 TIGR00379 cobB cobyrinic acid 93.7 0.17 3.6E-06 47.4 6.3 35 56-91 303-337 (449)
178 KOG3210 Imidazoleglycerol-phos 93.5 0.15 3.2E-06 40.4 4.8 56 213-271 49-106 (226)
179 PF07722 Peptidase_C26: Peptid 93.3 0.18 3.9E-06 42.3 5.4 50 221-271 57-121 (217)
180 CHL00188 hisH imidazole glycer 93.2 0.16 3.5E-06 42.4 4.9 69 5-91 16-90 (210)
181 COG2071 Predicted glutamine am 93.2 0.18 3.8E-06 42.6 4.9 49 221-270 59-121 (243)
182 COG3155 ElbB Uncharacterized p 93.1 0.19 4.1E-06 39.6 4.6 87 2-90 21-143 (217)
183 PRK06490 glutamine amidotransf 92.9 0.42 9.2E-06 40.7 7.0 75 6-91 24-102 (239)
184 COG1492 CobQ Cobyric acid synt 92.8 1.2 2.6E-05 41.6 10.3 135 106-271 199-340 (486)
185 COG1797 CobB Cobyrinic acid a, 92.6 0.22 4.8E-06 45.6 5.1 72 6-91 263-339 (451)
186 TIGR01857 FGAM-synthase phosph 92.3 0.53 1.1E-05 49.1 8.0 39 57-96 1057-1095(1239)
187 PRK00784 cobyric acid synthase 92.2 0.28 6.1E-06 46.4 5.6 33 59-92 310-342 (488)
188 PRK05368 homoserine O-succinyl 92.1 0.28 6E-06 43.2 5.1 107 159-271 34-150 (302)
189 PRK06895 putative anthranilate 91.9 0.58 1.2E-05 38.3 6.5 70 5-91 16-88 (190)
190 PLN03206 phosphoribosylformylg 91.8 0.54 1.2E-05 49.4 7.5 90 6-98 1054-1149(1307)
191 TIGR01855 IMP_synth_hisH imida 91.6 0.31 6.7E-06 40.2 4.5 29 63-92 60-88 (196)
192 KOG0370 Multifunctional pyrimi 91.6 0.39 8.5E-06 47.9 5.8 70 180-272 187-256 (1435)
193 TIGR01823 PabB-fungal aminodeo 91.5 0.96 2.1E-05 45.0 8.6 89 164-272 7-102 (742)
194 cd03145 GAT1_cyanophycinase Ty 91.4 1.9 4E-05 36.2 9.1 100 161-271 30-132 (217)
195 PLN02889 oxo-acid-lyase/anthra 91.0 1.1 2.4E-05 45.3 8.5 91 163-272 82-178 (918)
196 PHA03366 FGAM-synthase; Provis 90.9 0.68 1.5E-05 48.8 7.2 88 6-95 1045-1137(1304)
197 TIGR02069 cyanophycinase cyano 90.7 2.3 5E-05 36.5 9.2 100 161-271 29-131 (250)
198 COG0118 HisH Glutamine amidotr 89.8 0.65 1.4E-05 38.2 4.8 75 6-93 17-92 (204)
199 TIGR01739 tegu_FGAM_synt herpe 89.6 1.1 2.3E-05 47.1 7.3 88 6-96 946-1039(1202)
200 PLN02617 imidazole glycerol ph 89.5 0.91 2E-05 43.4 6.2 30 61-91 66-95 (538)
201 PRK13146 hisH imidazole glycer 89.3 0.67 1.5E-05 38.6 4.7 30 63-93 66-95 (209)
202 TIGR00566 trpG_papA glutamine 89.2 1 2.2E-05 36.8 5.6 69 6-91 15-88 (188)
203 TIGR00888 guaA_Nterm GMP synth 89.1 1.1 2.4E-05 36.5 5.8 70 6-91 14-86 (188)
204 COG4635 HemG Flavodoxin [Energ 88.6 3.5 7.5E-05 32.7 7.8 85 162-266 2-90 (175)
205 PRK13896 cobyrinic acid a,c-di 88.3 1 2.2E-05 41.8 5.6 68 7-91 252-324 (433)
206 PRK05665 amidotransferase; Pro 88.2 0.62 1.4E-05 39.7 3.9 30 61-91 78-107 (240)
207 PRK05297 phosphoribosylformylg 88.0 1.4 3E-05 46.7 6.8 39 56-95 1105-1145(1290)
208 PF07685 GATase_3: CobB/CobQ-l 87.9 0.49 1.1E-05 37.5 2.9 35 57-92 25-59 (158)
209 PRK13170 hisH imidazole glycer 87.9 0.75 1.6E-05 37.9 4.1 69 6-92 16-87 (196)
210 KOG0623 Glutamine amidotransfe 87.6 1.5 3.3E-05 38.9 5.8 74 176-271 14-89 (541)
211 COG4285 Uncharacterized conser 86.6 6.4 0.00014 32.8 8.5 89 161-266 1-93 (253)
212 PRK06774 para-aminobenzoate sy 86.6 2.1 4.5E-05 35.0 5.9 69 6-91 15-88 (191)
213 cd03131 GATase1_HTS Type 1 glu 86.5 0.48 1E-05 38.3 2.1 94 169-266 8-109 (175)
214 cd01743 GATase1_Anthranilate_S 86.2 3.1 6.8E-05 33.6 6.8 70 7-91 15-87 (184)
215 TIGR01735 FGAM_synt phosphorib 86.1 1.7 3.8E-05 45.9 6.4 39 57-96 1126-1166(1310)
216 PRK05670 anthranilate synthase 86.0 2.2 4.7E-05 34.8 5.8 68 7-91 16-88 (189)
217 COG0518 GuaA GMP synthase - Gl 85.5 1 2.3E-05 37.2 3.6 31 60-91 65-95 (198)
218 PRK13152 hisH imidazole glycer 85.3 2.5 5.5E-05 34.8 5.9 28 64-92 62-90 (201)
219 cd01745 GATase1_2 Subgroup of 85.2 1 2.2E-05 36.9 3.5 30 61-91 87-116 (189)
220 PF01174 SNO: SNO glutamine am 85.2 1.2 2.6E-05 36.3 3.7 42 49-91 41-84 (188)
221 PRK14004 hisH imidazole glycer 84.8 2.3 4.9E-05 35.5 5.4 31 61-92 59-89 (210)
222 PF00117 GATase: Glutamine ami 84.7 1.3 2.8E-05 36.1 3.9 73 7-92 14-89 (192)
223 cd01742 GATase1_GMP_Synthase T 84.5 3.7 7.9E-05 33.0 6.5 70 6-91 14-86 (181)
224 PRK12564 carbamoyl phosphate s 84.5 1.6 3.5E-05 39.6 4.6 31 60-91 234-264 (360)
225 PRK09065 glutamine amidotransf 84.2 1.3 2.9E-05 37.6 3.9 30 61-91 75-104 (237)
226 PRK13181 hisH imidazole glycer 83.0 1.1 2.4E-05 36.9 2.8 29 62-91 60-88 (199)
227 PRK13142 hisH imidazole glycer 82.9 2.3 5E-05 35.0 4.6 71 5-92 14-87 (192)
228 PRK07765 para-aminobenzoate sy 82.7 1.5 3.2E-05 36.7 3.5 71 7-91 17-92 (214)
229 TIGR01815 TrpE-clade3 anthrani 82.3 3.6 7.7E-05 40.9 6.4 31 60-91 574-604 (717)
230 COG3340 PepE Peptidase E [Amin 81.7 11 0.00024 31.4 8.1 97 160-271 32-133 (224)
231 PRK00758 GMP synthase subunit 81.1 3.9 8.3E-05 33.1 5.3 27 61-91 57-83 (184)
232 PRK02645 ppnK inorganic polyph 80.4 16 0.00036 32.2 9.4 87 160-265 3-92 (305)
233 PF09897 DUF2124: Uncharacteri 79.6 4.9 0.00011 31.3 5.0 109 158-275 17-129 (147)
234 PRK13566 anthranilate synthase 79.5 4.9 0.00011 40.0 6.3 31 60-91 584-614 (720)
235 cd03146 GAT1_Peptidase_E Type 79.3 2.8 6E-05 35.0 4.0 30 61-91 101-130 (212)
236 PRK06455 riboflavin synthase; 78.7 5.3 0.00012 31.5 5.1 92 160-261 1-97 (155)
237 KOG2387 CTP synthase (UTP-ammo 78.5 3.8 8.2E-05 37.8 4.7 42 221-266 362-403 (585)
238 PRK03708 ppnK inorganic polyph 78.1 17 0.00037 31.7 8.7 89 161-266 1-91 (277)
239 PRK09271 flavodoxin; Provision 77.9 20 0.00044 28.2 8.5 91 161-264 1-94 (160)
240 KOG1907 Phosphoribosylformylgl 76.9 32 0.00069 34.9 10.7 97 160-275 1058-1166(1320)
241 cd03143 A4_beta-galactosidase_ 75.5 19 0.0004 28.0 7.6 62 172-260 24-85 (154)
242 PRK07567 glutamine amidotransf 75.3 3.9 8.5E-05 34.9 3.9 27 64-91 83-109 (242)
243 PRK11104 hemG protoporphyrinog 75.2 20 0.00043 28.9 7.8 83 162-265 2-88 (177)
244 cd02071 MM_CoA_mut_B12_BD meth 72.6 18 0.00039 27.1 6.6 68 170-251 10-77 (122)
245 PRK11366 puuD gamma-glutamyl-g 72.3 4.4 9.6E-05 34.8 3.5 30 61-91 94-123 (254)
246 TIGR00313 cobQ cobyric acid sy 72.1 6.7 0.00015 37.0 4.9 32 59-91 304-335 (475)
247 PF08532 Glyco_hydro_42M: Beta 71.0 16 0.00035 30.1 6.5 66 173-265 29-95 (207)
248 COG0062 Uncharacterized conser 71.0 24 0.00051 29.3 7.3 106 161-273 50-168 (203)
249 CHL00101 trpG anthranilate syn 70.6 4.1 9E-05 33.2 2.8 24 67-91 65-88 (190)
250 PF03853 YjeF_N: YjeF-related 70.2 48 0.001 26.4 8.9 102 159-264 24-140 (169)
251 cd02070 corrinoid_protein_B12- 69.2 19 0.00041 29.6 6.5 77 161-251 83-160 (201)
252 COG1182 AcpD Acyl carrier prot 68.2 11 0.00024 31.1 4.7 64 53-124 96-165 (202)
253 PRK08007 para-aminobenzoate sy 68.2 5 0.00011 32.7 2.8 69 6-91 15-88 (187)
254 PRK08857 para-aminobenzoate sy 67.9 5.5 0.00012 32.6 3.0 69 6-91 15-88 (193)
255 PRK03372 ppnK inorganic polyph 67.9 60 0.0013 28.8 9.7 97 159-266 4-107 (306)
256 COG0311 PDX2 Predicted glutami 67.7 3.7 8E-05 33.3 1.9 42 49-91 46-88 (194)
257 PRK05568 flavodoxin; Provision 67.2 53 0.0011 24.9 8.6 86 161-264 2-91 (142)
258 PRK05637 anthranilate synthase 66.3 6.8 0.00015 32.6 3.3 68 6-91 17-89 (208)
259 TIGR01754 flav_RNR ribonucleot 65.9 44 0.00095 25.5 7.6 42 221-264 49-90 (140)
260 TIGR01368 CPSaseIIsmall carbam 64.6 7.1 0.00015 35.4 3.3 30 60-91 230-259 (358)
261 PRK02155 ppnK NAD(+)/NADH kina 64.5 75 0.0016 27.9 9.6 92 160-266 5-98 (291)
262 KOG3179 Predicted glutamine sy 64.4 44 0.00096 27.8 7.4 30 61-91 80-109 (245)
263 COG2379 GckA Putative glycerat 64.2 31 0.00066 31.5 7.0 151 32-195 65-279 (422)
264 COG2071 Predicted glutamine am 63.8 9.7 0.00021 32.3 3.7 32 58-90 91-122 (243)
265 TIGR01251 ribP_PPkin ribose-ph 63.3 39 0.00084 29.9 7.7 143 127-271 12-175 (308)
266 PF12682 Flavodoxin_4: Flavodo 62.9 2.7 5.8E-05 33.3 0.2 42 219-263 70-111 (156)
267 PRK11914 diacylglycerol kinase 62.6 31 0.00066 30.3 7.0 37 160-196 8-48 (306)
268 cd01746 GATase1_CTP_Synthase T 62.4 11 0.00024 31.9 4.0 30 60-90 70-99 (235)
269 TIGR02370 pyl_corrinoid methyl 61.6 25 0.00053 28.9 5.8 77 161-254 85-162 (197)
270 PRK05569 flavodoxin; Provision 61.0 45 0.00097 25.3 6.9 88 161-266 2-94 (141)
271 PF02310 B12-binding: B12 bind 60.9 15 0.00033 27.0 4.1 36 162-197 2-38 (121)
272 KOG4435 Predicted lipid kinase 60.9 11 0.00024 34.4 3.7 39 159-197 59-102 (535)
273 PRK06703 flavodoxin; Provision 60.7 30 0.00065 26.8 5.9 89 161-266 2-93 (151)
274 PF13380 CoA_binding_2: CoA bi 60.6 67 0.0014 23.8 9.4 62 162-230 2-63 (116)
275 PF00885 DMRL_synthase: 6,7-di 60.2 23 0.0005 27.6 5.1 91 160-259 3-103 (144)
276 PF03575 Peptidase_S51: Peptid 60.0 3.3 7.3E-05 32.5 0.3 79 6-93 5-87 (154)
277 cd03144 GATase1_ScBLP_like Typ 59.7 7.7 0.00017 29.0 2.2 22 64-85 67-88 (114)
278 PRK12361 hypothetical protein; 59.1 1.7E+02 0.0037 28.1 12.1 25 61-85 162-186 (547)
279 COG3442 Predicted glutamine am 59.1 6.9 0.00015 32.7 2.0 29 61-90 74-102 (250)
280 cd01747 GATase1_Glutamyl_Hydro 58.9 32 0.00069 29.9 6.3 28 62-90 78-107 (273)
281 PRK01231 ppnK inorganic polyph 58.8 80 0.0017 27.8 8.8 92 160-266 4-97 (295)
282 PRK03378 ppnK inorganic polyph 58.2 1.1E+02 0.0023 27.0 9.5 91 160-265 5-97 (292)
283 PRK01911 ppnK inorganic polyph 57.9 96 0.0021 27.3 9.1 95 161-266 1-99 (292)
284 PF09822 ABC_transp_aux: ABC-t 57.9 91 0.002 26.7 9.0 80 160-264 146-235 (271)
285 PRK09522 bifunctional glutamin 57.6 25 0.00055 33.7 5.8 20 71-91 74-93 (531)
286 COG0512 PabA Anthranilate/para 57.4 36 0.00078 27.9 5.8 31 59-91 60-90 (191)
287 PRK04539 ppnK inorganic polyph 56.9 1.2E+02 0.0027 26.7 9.6 94 159-265 4-102 (296)
288 PRK13054 lipid kinase; Reviewe 56.7 91 0.002 27.3 8.9 36 160-195 3-39 (300)
289 PRK14077 pnk inorganic polypho 56.1 1E+02 0.0023 27.0 9.0 90 159-266 9-99 (287)
290 PRK06756 flavodoxin; Provision 55.8 65 0.0014 24.7 7.1 87 161-265 2-93 (148)
291 PRK12838 carbamoyl phosphate s 55.7 13 0.00027 33.7 3.3 30 60-91 224-253 (354)
292 PRK02649 ppnK inorganic polyph 55.5 1.3E+02 0.0028 26.7 9.5 95 160-266 1-103 (305)
293 PF11760 CbiG_N: Cobalamin syn 54.7 35 0.00076 24.0 4.7 62 64-125 2-76 (84)
294 PRK02261 methylaspartate mutas 54.4 44 0.00095 25.7 5.8 59 160-230 3-62 (137)
295 PRK06934 flavodoxin; Provision 53.9 10 0.00022 31.9 2.3 42 220-264 127-168 (221)
296 PRK00061 ribH 6,7-dimethyl-8-r 53.5 35 0.00076 27.0 5.1 93 159-260 11-113 (154)
297 COG1832 Predicted CoA-binding 52.8 87 0.0019 24.3 6.9 65 157-228 13-79 (140)
298 KOG0370 Multifunctional pyrimi 52.6 2.1E+02 0.0046 29.7 11.1 72 159-231 376-461 (1435)
299 PF01799 Fer2_2: [2Fe-2S] bind 51.3 3.7 8E-05 28.2 -0.6 53 57-110 5-68 (75)
300 PRK05282 (alpha)-aspartyl dipe 50.7 19 0.00042 30.5 3.5 33 59-92 98-130 (233)
301 CHL00197 carA carbamoyl-phosph 49.5 20 0.00044 32.8 3.6 30 61-91 250-279 (382)
302 cd02067 B12-binding B12 bindin 49.4 75 0.0016 23.3 6.3 68 170-251 10-77 (119)
303 PRK12419 riboflavin synthase s 49.3 31 0.00066 27.4 4.1 93 159-260 9-111 (158)
304 PRK07649 para-aminobenzoate/an 48.8 16 0.00036 29.9 2.7 69 6-91 15-88 (195)
305 KOG1224 Para-aminobenzoate (PA 48.1 77 0.0017 30.3 7.1 93 161-271 13-110 (767)
306 TIGR00147 lipid kinase, YegS/R 47.5 1.4E+02 0.0031 25.8 8.7 37 161-197 2-42 (293)
307 PF01058 Oxidored_q6: NADH ubi 44.5 25 0.00054 26.8 3.0 41 221-266 44-84 (131)
308 PRK13055 putative lipid kinase 44.5 1.6E+02 0.0035 26.2 8.6 36 160-195 2-41 (334)
309 PLN02727 NAD kinase 43.9 1.5E+02 0.0032 30.6 8.7 97 159-266 677-778 (986)
310 PF12724 Flavodoxin_5: Flavodo 43.7 32 0.00069 26.4 3.5 43 220-265 41-85 (143)
311 PF02558 ApbA: Ketopantoate re 43.6 34 0.00073 26.2 3.7 82 179-266 13-105 (151)
312 cd01481 vWA_collagen_alpha3-VI 43.6 66 0.0014 25.4 5.4 37 160-196 106-142 (165)
313 PF04204 HTS: Homoserine O-suc 43.1 30 0.00065 30.5 3.5 104 159-266 33-145 (298)
314 PRK13337 putative lipid kinase 43.0 1.7E+02 0.0036 25.6 8.4 36 161-196 2-41 (304)
315 COG0054 RibH Riboflavin syntha 42.9 56 0.0012 25.7 4.6 93 159-260 11-113 (152)
316 COG1058 CinA Predicted nucleot 42.4 68 0.0015 27.6 5.5 75 171-254 18-106 (255)
317 PLN02958 diacylglycerol kinase 42.4 1.7E+02 0.0036 27.8 8.7 65 159-233 110-179 (481)
318 PRK06278 cobyrinic acid a,c-di 41.7 22 0.00049 33.5 2.7 27 61-91 55-81 (476)
319 PF07722 Peptidase_C26: Peptid 41.4 28 0.0006 29.1 3.0 28 62-90 94-121 (217)
320 COG0061 nadF NAD kinase [Coenz 40.9 2E+02 0.0043 25.1 8.4 87 162-266 2-90 (281)
321 cd05014 SIS_Kpsf KpsF-like pro 40.8 1.4E+02 0.0031 21.8 8.0 78 168-265 7-84 (128)
322 PF09825 BPL_N: Biotin-protein 40.7 60 0.0013 29.6 5.2 30 60-91 68-97 (367)
323 PRK03767 NAD(P)H:quinone oxido 40.6 72 0.0016 26.0 5.4 101 161-266 2-117 (200)
324 PLN02404 6,7-dimethyl-8-ribity 40.3 46 0.001 25.9 3.8 91 160-259 7-107 (141)
325 KOG0026 Anthranilate synthase, 40.2 1.8E+02 0.004 23.3 7.1 86 165-270 21-106 (223)
326 PRK06242 flavodoxin; Provision 39.4 41 0.00089 25.8 3.6 43 221-266 42-85 (150)
327 PLN02204 diacylglycerol kinase 39.0 58 0.0013 31.7 5.0 68 159-233 158-229 (601)
328 COG0505 CarA Carbamoylphosphat 38.5 42 0.0009 30.3 3.7 31 60-91 236-266 (368)
329 PF01975 SurE: Survival protei 37.9 56 0.0012 26.9 4.3 38 161-198 1-38 (196)
330 PRK01259 ribose-phosphate pyro 37.8 1.1E+02 0.0025 27.0 6.4 126 144-271 31-174 (309)
331 TIGR00114 lumazine-synth 6,7-d 37.7 53 0.0012 25.4 3.8 91 161-260 1-101 (138)
332 cd02069 methionine_synthase_B1 37.5 1.6E+02 0.0035 24.5 7.0 59 161-231 89-148 (213)
333 PF03698 UPF0180: Uncharacteri 37.5 92 0.002 21.7 4.6 20 175-194 9-28 (80)
334 PLN02335 anthranilate synthase 37.3 36 0.00078 28.5 3.1 27 63-91 81-107 (222)
335 COG0812 MurB UDP-N-acetylmuram 37.3 40 0.00086 29.6 3.4 150 36-187 3-199 (291)
336 PLN02347 GMP synthetase 37.1 52 0.0011 31.7 4.4 25 66-91 78-102 (536)
337 PLN02935 Bifunctional NADH kin 37.0 2.2E+02 0.0048 27.2 8.4 97 159-266 193-297 (508)
338 KOG0623 Glutamine amidotransfe 37.0 56 0.0012 29.3 4.2 32 59-91 59-90 (541)
339 PF00265 TK: Thymidine kinase; 36.6 2.2E+02 0.0049 22.8 11.0 91 163-259 3-107 (176)
340 PRK05380 pyrG CTP synthetase; 36.5 49 0.0011 31.7 4.1 30 60-90 358-387 (533)
341 cd06305 PBP1_methylthioribose_ 36.4 1.2E+02 0.0025 25.4 6.2 35 162-196 1-38 (273)
342 TIGR02922 conserved hypothetic 36.3 22 0.00048 23.3 1.3 24 249-272 38-61 (67)
343 PRK07308 flavodoxin; Validated 35.4 1.5E+02 0.0032 22.6 6.2 84 162-264 3-91 (146)
344 PLN02771 carbamoyl-phosphate s 35.3 44 0.00096 31.0 3.5 30 60-91 297-326 (415)
345 TIGR01001 metA homoserine O-su 35.2 31 0.00067 30.3 2.4 104 159-266 34-146 (300)
346 COG4090 Uncharacterized protei 35.0 81 0.0018 24.2 4.2 102 161-274 27-133 (154)
347 PRK04923 ribose-phosphate pyro 34.9 2.7E+02 0.0059 24.8 8.4 127 143-271 36-182 (319)
348 PRK00861 putative lipid kinase 34.2 2.4E+02 0.0052 24.5 8.0 10 160-169 2-11 (300)
349 PRK04761 ppnK inorganic polyph 34.1 64 0.0014 27.6 4.1 39 219-266 22-60 (246)
350 PF12646 DUF3783: Domain of un 33.7 79 0.0017 20.3 3.6 29 165-193 3-31 (58)
351 PRK14076 pnk inorganic polypho 33.6 2.9E+02 0.0064 26.8 9.0 93 159-266 289-383 (569)
352 PRK03092 ribose-phosphate pyro 33.2 1.8E+02 0.004 25.7 7.0 142 128-271 2-164 (304)
353 PRK13903 murB UDP-N-acetylenol 33.0 74 0.0016 29.0 4.6 89 32-121 11-114 (363)
354 cd01482 vWA_collagen_alphaI-XI 32.4 1.3E+02 0.0028 23.4 5.5 37 160-196 103-139 (164)
355 COG1597 LCB5 Sphingosine kinas 32.4 3.4E+02 0.0074 23.9 8.6 24 173-196 19-42 (301)
356 PRK11303 DNA-binding transcrip 32.2 1.8E+02 0.004 25.2 7.0 61 127-196 37-100 (328)
357 cd01473 vWA_CTRP CTRP for CS 32.0 97 0.0021 25.1 4.8 37 161-197 109-149 (192)
358 COG5441 Uncharacterized conser 32.0 2E+02 0.0044 25.5 6.7 65 159-229 1-68 (401)
359 cd01475 vWA_Matrilin VWA_Matri 31.7 1.2E+02 0.0025 25.2 5.4 36 161-196 109-144 (224)
360 PF06283 ThuA: Trehalose utili 31.5 1.9E+02 0.0041 23.8 6.6 42 220-265 50-91 (217)
361 PF09558 DUF2375: Protein of u 31.4 26 0.00056 23.3 1.0 25 248-272 39-63 (71)
362 PRK13932 stationary phase surv 31.2 1.4E+02 0.0031 25.7 5.8 38 160-198 5-42 (257)
363 PRK14607 bifunctional glutamin 31.0 44 0.00096 32.1 2.9 28 62-91 62-89 (534)
364 PRK02269 ribose-phosphate pyro 30.8 3.1E+02 0.0067 24.4 8.1 112 159-271 51-181 (320)
365 PRK03670 competence damage-ind 30.7 2.9E+02 0.0063 23.7 7.6 74 173-254 19-106 (252)
366 cd06533 Glyco_transf_WecG_TagA 30.7 2E+02 0.0043 22.9 6.3 89 160-266 46-134 (171)
367 COG4126 Hydantoin racemase [Am 30.4 3.4E+02 0.0073 23.0 8.0 40 220-271 67-106 (230)
368 cd06318 PBP1_ABC_sugar_binding 30.0 1.4E+02 0.0031 25.0 5.8 84 162-262 1-87 (282)
369 PRK13059 putative lipid kinase 30.0 3.7E+02 0.008 23.4 8.4 36 161-196 2-41 (295)
370 cd08195 DHQS Dehydroquinate sy 29.7 1.9E+02 0.0042 25.9 6.7 96 161-264 25-120 (345)
371 cd01472 vWA_collagen von Wille 29.4 1.6E+02 0.0035 22.7 5.6 37 160-196 103-139 (164)
372 PF03808 Glyco_tran_WecB: Glyc 28.7 2E+02 0.0043 22.9 6.0 95 161-274 49-143 (172)
373 PRK06186 hypothetical protein; 28.6 82 0.0018 26.7 3.8 33 49-85 61-93 (229)
374 TIGR03127 RuMP_HxlB 6-phospho 28.4 2.7E+02 0.0059 21.9 6.8 81 157-263 27-107 (179)
375 PF12641 Flavodoxin_3: Flavodo 28.2 88 0.0019 24.8 3.8 40 220-264 37-76 (160)
376 PF04478 Mid2: Mid2 like cell 28.0 51 0.0011 26.0 2.3 50 73-127 47-110 (154)
377 cd01538 PBP1_ABC_xylose_bindin 27.9 1.8E+02 0.0038 24.8 6.0 83 163-262 2-87 (288)
378 PF13685 Fe-ADH_2: Iron-contai 27.8 3.2E+02 0.0069 23.4 7.3 90 161-266 20-110 (250)
379 cd03142 GATase1_ThuA Type 1 gl 27.6 3.7E+02 0.0079 22.5 8.0 69 178-264 27-97 (215)
380 cd06310 PBP1_ABC_sugar_binding 27.6 1.8E+02 0.0038 24.3 5.9 34 162-195 1-37 (273)
381 COG1587 HemD Uroporphyrinogen- 27.3 3.7E+02 0.008 22.7 7.8 63 160-232 123-185 (248)
382 cd00587 HCP_like The HCP famil 26.4 4.3E+02 0.0092 22.9 9.5 38 58-96 108-145 (258)
383 PF04024 PspC: PspC domain; I 26.0 43 0.00092 21.9 1.3 14 72-85 8-21 (61)
384 PF02441 Flavoprotein: Flavopr 26.0 1.7E+02 0.0036 21.9 4.9 106 161-266 1-122 (129)
385 PRK14817 NADH dehydrogenase su 25.8 1E+02 0.0022 25.0 3.7 39 220-263 73-111 (181)
386 COG2247 LytB Putative cell wal 25.4 1.6E+02 0.0036 26.2 5.1 90 163-266 30-142 (337)
387 cd03129 GAT1_Peptidase_E_like 25.3 87 0.0019 25.7 3.4 28 63-91 103-130 (210)
388 PTZ00393 protein tyrosine phos 25.2 4.3E+02 0.0094 22.6 8.1 88 163-264 92-179 (241)
389 PRK06411 NADH dehydrogenase su 25.0 1.1E+02 0.0023 25.0 3.7 39 220-263 72-110 (183)
390 PRK01372 ddl D-alanine--D-alan 24.9 2E+02 0.0044 24.9 5.9 39 159-197 3-46 (304)
391 cd01477 vWA_F09G8-8_type VWA F 24.8 2E+02 0.0043 23.4 5.4 38 160-197 131-171 (193)
392 COG0462 PrsA Phosphoribosylpyr 24.8 2.5E+02 0.0054 25.0 6.2 69 125-195 14-91 (314)
393 PRK10355 xylF D-xylose transpo 24.5 3E+02 0.0064 24.3 7.0 39 159-197 24-65 (330)
394 COG2238 RPS19A Ribosomal prote 24.3 93 0.002 24.1 3.0 37 88-124 105-141 (147)
395 cd02774 MopB_Res-Cmplx1_Nad11- 24.0 5.5E+02 0.012 23.3 8.9 95 161-262 88-185 (366)
396 cd05008 SIS_GlmS_GlmD_1 SIS (S 23.9 1.6E+02 0.0034 21.6 4.4 37 222-264 46-82 (126)
397 TIGR01357 aroB 3-dehydroquinat 23.8 2.8E+02 0.006 24.8 6.6 96 161-264 21-116 (344)
398 PRK13982 bifunctional SbtC-lik 23.3 4.5E+02 0.0098 24.9 8.0 93 103-196 4-106 (475)
399 TIGR01755 flav_wrbA NAD(P)H:qu 23.3 2.4E+02 0.0052 22.9 5.7 100 162-266 2-116 (197)
400 PLN00118 isocitrate dehydrogen 23.0 1.8E+02 0.0039 26.6 5.1 106 114-229 1-107 (372)
401 KOG1252 Cystathionine beta-syn 22.8 4.2E+02 0.0092 24.0 7.2 198 59-271 83-319 (362)
402 PRK00561 ppnK inorganic polyph 22.8 1.3E+02 0.0028 26.0 4.0 37 221-266 32-68 (259)
403 cd08197 DOIS 2-deoxy-scyllo-in 22.8 4.6E+02 0.0099 23.7 7.8 92 161-263 24-118 (355)
404 COG0041 PurE Phosphoribosylcar 22.7 2.7E+02 0.0058 22.1 5.3 38 161-198 3-42 (162)
405 cd06312 PBP1_ABC_sugar_binding 22.4 2.9E+02 0.0063 23.0 6.3 85 162-263 1-90 (271)
406 PRK10014 DNA-binding transcrip 22.3 4.3E+02 0.0094 22.9 7.6 58 129-195 42-102 (342)
407 TIGR01753 flav_short flavodoxi 22.2 3.3E+02 0.0071 20.1 6.2 72 177-266 17-91 (140)
408 TIGR01823 PabB-fungal aminodeo 22.2 86 0.0019 31.5 3.2 27 64-91 72-102 (742)
409 PRK02812 ribose-phosphate pyro 22.0 3.5E+02 0.0075 24.3 6.8 163 93-271 15-195 (330)
410 PRK08040 putative semialdehyde 21.8 5.9E+02 0.013 22.9 8.7 89 159-259 3-94 (336)
411 PRK13303 L-aspartate dehydroge 21.7 3.5E+02 0.0075 23.2 6.6 88 161-264 2-94 (265)
412 TIGR03521 GldG gliding-associa 21.3 7.5E+02 0.016 23.9 9.7 84 159-259 182-266 (552)
413 PRK01215 competence damage-ind 21.3 5.4E+02 0.012 22.2 8.0 86 160-254 3-108 (264)
414 TIGR01957 nuoB_fam NADH-quinon 21.3 1.4E+02 0.003 23.4 3.5 39 220-263 55-93 (145)
415 PRK10333 5-formyltetrahydrofol 21.2 2.8E+02 0.006 22.3 5.5 106 159-266 33-156 (182)
416 cd02065 B12-binding_like B12 b 21.2 3.3E+02 0.0071 19.7 7.1 52 168-231 8-59 (125)
417 TIGR02336 1,3-beta-galactosyl- 21.1 2.4E+02 0.0053 28.0 5.8 76 172-263 466-544 (719)
418 PRK13934 stationary phase surv 21.1 2.8E+02 0.0062 24.0 5.8 36 162-198 2-37 (266)
419 cd06320 PBP1_allose_binding Pe 21.0 2.6E+02 0.0056 23.3 5.7 34 162-195 1-37 (275)
420 cd08199 EEVS 2-epi-5-epi-valio 21.0 3.4E+02 0.0074 24.5 6.6 97 160-264 26-123 (354)
421 PRK14820 NADH dehydrogenase su 20.8 1.5E+02 0.0032 24.1 3.7 39 220-263 71-109 (180)
422 PRK05368 homoserine O-succinyl 20.6 1.4E+02 0.003 26.4 3.9 28 63-91 124-151 (302)
423 cd04795 SIS SIS domain. SIS (S 20.5 2.2E+02 0.0049 18.9 4.3 34 223-262 48-81 (87)
No 1
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=99.97 E-value=3.8e-30 Score=208.57 Aligned_cols=196 Identities=43% Similarity=0.591 Sum_probs=164.3
Q ss_pred CchhhHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC--------CCccchhccccChHHHHHHHHHHh
Q 023800 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA--------CGMPGATNLKESEVLESIVKKQAS 72 (277)
Q Consensus 1 ~E~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~--------gG~~~~~~~~~~~~~~~~l~~~~~ 72 (277)
+|++.|.++|+|.|++|+++|++++.+++++.|..+.+|..+.|.... ||.++...+.+++.+.+++|+|.+
T Consensus 19 ~E~ivp~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e~L~~~~~v~~lvK~q~~ 98 (247)
T KOG2764|consen 19 YEFIVPIDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAETLSECEKVVDLVKEQAE 98 (247)
T ss_pred eEEEEeHHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchhhhhhhhcHHHHHHHHHHHh
Confidence 589999999999999999999998889999999999999988776432 887889999999999999999999
Q ss_pred CCCEEEEEchhHHHHHHHcCCCCCCC-------------------------CCCeEcCCCCCCHHHHHHHHHHHhcChhH
Q 023800 73 DGRLYAAICVFLAVALGSWGLLKGLK-------------------------DGKVVTTRGPGTPMEFVVALVEQLYGKGK 127 (277)
Q Consensus 73 ~g~~i~aiC~g~~~~La~aGll~g~~-------------------------dg~~iT~~g~~~~~~~a~~li~~l~g~~~ 127 (277)
.|++|++||+||.++|+..|++.|++ |||+|||+||+++++|++.++|+|.|++.
T Consensus 99 ~gkLIaaICaap~~al~a~gl~~gkk~T~~ps~k~~L~~~gy~yve~~vv~dG~liTSrGpgT~~eFal~lvEqL~GKek 178 (247)
T KOG2764|consen 99 SGKLIAAICAAPLTALAAHGLLGGKKCTAHPSVKPKLEEGGYKYVEPRVVKDGNLITSRGPGTAFEFALKLVEQLGGKEK 178 (247)
T ss_pred cCCeEEEeecchHHHHhhccccccceeeeccchhhhHhhcCcEEecCCeEEeCcEEeccCCCchHHHHHHHHHHhcCchh
Confidence 99999999999954788888888888 99999999999999999999999999999
Q ss_pred HHHHhhcccccccCCCchhhcccCccccccCCCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCc
Q 023800 128 ADEVSGARVMRANHGDEFTIAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQV 207 (277)
Q Consensus 128 a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~ 207 (277)
+.++.+.+.+..+. +.|+-...|.....+++++ +.++.+-+.. .
T Consensus 179 a~~v~~~l~l~~~~-------------------------v~~~~~~~e~~a~~~~~~~-~~~v~~~~~g----------~ 222 (247)
T KOG2764|consen 179 ANEVKKPLSLLFLP-------------------------VAPEKKAGEACATADHDLE-GRQVPVEKVG----------H 222 (247)
T ss_pred hhhhhccceeeccc-------------------------cCCCchhcceecceehhhh-cCcceeeccc----------c
Confidence 99998877766433 4566666777777777777 6666544433 2
Q ss_pred EEEeCcchhhhccCCccEEEEcCCc
Q 023800 208 KLVADMLIDEAAKLSYDLIVLPGGL 232 (277)
Q Consensus 208 ~i~~~~~~~~~~~~~~D~livpGG~ 232 (277)
+......|+|+..++||.|++|||.
T Consensus 223 ~~~~~~~~dd~~~~syD~ivlPgg~ 247 (247)
T KOG2764|consen 223 NFAKTVAWDDAAVSSYDLIVLPGGR 247 (247)
T ss_pred ceEEEEEehhhhcccccEEEecCCC
Confidence 2222233888877899999999983
No 2
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=99.92 E-value=3e-24 Score=177.96 Aligned_cols=142 Identities=37% Similarity=0.546 Sum_probs=123.2
Q ss_pred CchhhHHHHHHhCCCeEEEEeeCC--CceeecCCCCEEecCcccccccc---C-----CCccchhccccChHHHHHHHHH
Q 023800 1 MEAVITIDVLRRSGADVVVASVEK--QLRVDACHGVKIVADALVSNCRD---A-----CGMPGATNLKESEVLESIVKKQ 70 (277)
Q Consensus 1 ~E~~~~~~~l~~~~~~v~~~s~~~--~~~v~~~~g~~v~~d~~~~~~~~---~-----gG~~~~~~~~~~~~~~~~l~~~ 70 (277)
+|++.|+++|+++|+++.++|.++ +.+|++++|+.+.+|..+++++. + ||..+...+.+++.+.+||+++
T Consensus 16 ~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~~~~~~~~~l~~~L~~~ 95 (196)
T PRK11574 16 TEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGAECFRDSPLLVETVRQF 95 (196)
T ss_pred hhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchhhhhhhCHHHHHHHHHH
Confidence 489999999999999999999864 23799999999999999987642 2 7744455567888999999999
Q ss_pred HhCCCEEEEEchhHHHHHHHcCCCCCCC-----------------------CC--CeEcCCCCCCHHHHHHHHHHHhcCh
Q 023800 71 ASDGRLYAAICVFLAVALGSWGLLKGLK-----------------------DG--KVVTTRGPGTPMEFVVALVEQLYGK 125 (277)
Q Consensus 71 ~~~g~~i~aiC~g~~~~La~aGll~g~~-----------------------dg--~~iT~~g~~~~~~~a~~li~~l~g~ 125 (277)
+++|++|++||+|++++|+.+|+|+|++ |+ |+|||+|+++++||++++|+++.|+
T Consensus 96 ~~~g~~v~aic~G~~~ll~~~gll~~~~~t~~~~~~~~~p~~~~~~~~~v~d~~~~iiT~~G~~a~~dlal~li~~~~G~ 175 (196)
T PRK11574 96 HRSGRIVAAICAAPATVLVPHDLFPIGNMTGFPTLKDKIPAEQWQDKRVVWDARVNLLTSQGPGTAIDFALKIIDLLVGR 175 (196)
T ss_pred HHCCCEEEEECHhHHHHHHhCCccCCCeEeeCcChHHhcccCcccCCCEEEeCCccEEeCCCcchHHHHHHHHHHHhcCH
Confidence 9999999999999973466799998887 44 9999999999999999999999999
Q ss_pred hHHHHHhhcccccccCC
Q 023800 126 GKADEVSGARVMRANHG 142 (277)
Q Consensus 126 ~~a~~v~~~~~~~~~~~ 142 (277)
+.|+++++.|.++...+
T Consensus 176 ~~a~~va~~~~~~~~~~ 192 (196)
T PRK11574 176 EKAHEVASQLVMAAGIY 192 (196)
T ss_pred HHHHHHHhhhccCcccc
Confidence 99999999999886543
No 3
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=99.92 E-value=3.2e-24 Score=175.19 Aligned_cols=132 Identities=53% Similarity=0.792 Sum_probs=116.9
Q ss_pred CchhhHHHHHHhCCCeEEE--EeeCCCceeecCCCCEEecCccccccc--cC------CCccchhccccChHHHHHHHHH
Q 023800 1 MEAVITIDVLRRSGADVVV--ASVEKQLRVDACHGVKIVADALVSNCR--DA------CGMPGATNLKESEVLESIVKKQ 70 (277)
Q Consensus 1 ~E~~~~~~~l~~~~~~v~~--~s~~~~~~v~~~~g~~v~~d~~~~~~~--~~------gG~~~~~~~~~~~~~~~~l~~~ 70 (277)
.|+..|+++|+++|+++++ +|++++.++++++|+.+.+|..+++.. .. ||..+...+..++.+++||+++
T Consensus 13 ~e~~~~~~~l~~a~~~~~~~~~s~~g~~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~ 92 (179)
T TIGR01383 13 MEAVITVDVLRRAGIKVTVAIVGLNGKLPVKGSRGVKILADASLEDVDLEEFDAIVLPGGMPGAENLRNSKLLLNILKKQ 92 (179)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeccCCCcceEcCCCCEEeCCCCHHHCCcccCCEEEECCCchHHHHHhhCHHHHHHHHHH
Confidence 3789999999999977775 999864589999999999999988743 22 6643455567889999999999
Q ss_pred HhCCCEEEEEchhHHHHHHHcCCCCCCC------------------------CCCeEcCCCCCCHHHHHHHHHHHhcChh
Q 023800 71 ASDGRLYAAICVFLAVALGSWGLLKGLK------------------------DGKVVTTRGPGTPMEFVVALVEQLYGKG 126 (277)
Q Consensus 71 ~~~g~~i~aiC~g~~~~La~aGll~g~~------------------------dg~~iT~~g~~~~~~~a~~li~~l~g~~ 126 (277)
++++++|++||+|++ +||++|+|+||+ |||++||+|+.++++|++++++++.|++
T Consensus 93 ~~~~~~i~~ic~G~~-~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~v~dg~i~T~~g~~a~~d~~l~li~~~~g~~ 171 (179)
T TIGR01383 93 ESKGKLVAAICAAPA-VLLAAGVLLGKKATCYPGFKEKLLNGNYSVNEAVVVDGNIITSRGPGTAIEFALALVELLCGKE 171 (179)
T ss_pred HHCCCEEEEEChhHH-HHHhcCCCCCCcEEECccHHHhccCCceeCCCCEEEeCCEEECCChhhHHHHHHHHHHHhcCHH
Confidence 999999999999999 999999999987 8999999999999999999999999999
Q ss_pred HHHHHhh
Q 023800 127 KADEVSG 133 (277)
Q Consensus 127 ~a~~v~~ 133 (277)
.++++++
T Consensus 172 ~a~~va~ 178 (179)
T TIGR01383 172 KAQEVAA 178 (179)
T ss_pred HHHHhhc
Confidence 9999975
No 4
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.92 E-value=2.9e-24 Score=176.72 Aligned_cols=134 Identities=25% Similarity=0.325 Sum_probs=121.1
Q ss_pred CchhhHHHHHHhCC-------CeEEEEeeCCCceeecCCCCEEecCccccccccC------CCccchhccccChHHHHHH
Q 023800 1 MEAVITIDVLRRSG-------ADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGATNLKESEVLESIV 67 (277)
Q Consensus 1 ~E~~~~~~~l~~~~-------~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~------gG~~~~~~~~~~~~~~~~l 67 (277)
.|+..|+++|++++ |++.++|.++ .++++++|+.+.+|..+++..+. ||. +......++.+.+||
T Consensus 12 ~~~~~~~d~l~~a~~~~~~~~~~v~~vs~~~-~~v~~~~g~~v~~d~~~~~~~~~D~liipGg~-~~~~~~~~~~l~~~l 89 (187)
T cd03137 12 LDLSGPAEVFGEANRALGPPAYELRVCSPEG-GPVRSSSGLSLVADAGLDALAAADTVIVPGGP-DVDGRPPPPALLAAL 89 (187)
T ss_pred hHHhHHHHHHHHHHhhcCCCCeEEEEEeCCC-CceeecCCcEEEcCcCccccCCCCEEEECCCc-ccccccCCHHHHHHH
Confidence 37889999999987 9999999987 68999999999999988755432 663 444467899999999
Q ss_pred HHHHhCCCEEEEEchhHHHHHHHcCCCCCCC----------------------------CCCeEcCCCCCCHHHHHHHHH
Q 023800 68 KKQASDGRLYAAICVFLAVALGSWGLLKGLK----------------------------DGKVVTTRGPGTPMEFVVALV 119 (277)
Q Consensus 68 ~~~~~~g~~i~aiC~g~~~~La~aGll~g~~----------------------------dg~~iT~~g~~~~~~~a~~li 119 (277)
+++++++++|++||+|++ +|+++|+|+||+ |||++||+|+.+++||+++++
T Consensus 90 ~~~~~~~~~i~aic~g~~-~La~aGlL~~~~~t~~~~~~~~l~~~~~~~~~~~~~~~v~dg~i~Ta~g~~~~~d~~l~li 168 (187)
T cd03137 90 RRAAARGARVASVCTGAF-VLAEAGLLDGRRATTHWAYAEDLARRFPAVRVDPDVLYVDDGNVWTSAGVTAGIDLCLHLV 168 (187)
T ss_pred HHHHhcCCEEEEECHHHH-HHHHccCcCCCceeehHhhHHHHHHHCCCCEEecCCEEEecCCEEEcccHHHHHHHHHHHH
Confidence 999999999999999999 999999999997 899999999999999999999
Q ss_pred HHhcChhHHHHHhhcccc
Q 023800 120 EQLYGKGKADEVSGARVM 137 (277)
Q Consensus 120 ~~l~g~~~a~~v~~~~~~ 137 (277)
+++.|++.++++++.|.+
T Consensus 169 ~~~~g~~~a~~~a~~l~~ 186 (187)
T cd03137 169 REDLGAAVANRVARRLVV 186 (187)
T ss_pred HHHhCHHHHHHHHHHhcc
Confidence 999999999999998865
No 5
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.91 E-value=9.8e-24 Score=174.73 Aligned_cols=135 Identities=24% Similarity=0.297 Sum_probs=118.5
Q ss_pred chhhHHHHHHh------------CCCeEEEEeeCCCceeecCCCCEEecCccccccccC------CCccchh--ccccCh
Q 023800 2 EAVITIDVLRR------------SGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGAT--NLKESE 61 (277)
Q Consensus 2 E~~~~~~~l~~------------~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~------gG~~~~~--~~~~~~ 61 (277)
++..|+++|+. .+|+|+++|.++ .+|++++|+.+.+|..+++.++. ||..... .+..++
T Consensus 13 ~~~~~~e~f~~an~~~~~~~~~~~~~~v~~vs~~~-~~v~s~~g~~i~~d~~~~~~~~~D~liIpgg~~~~~~~~~~~~~ 91 (195)
T cd03138 13 SLAGLLDLLRAANRLARRQQGGAPPFEVRLVSLDG-GPVLLAGGILILPDATLADVPAPDLVIVPGLGGDPDELLLADNP 91 (195)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCeEEEEEcCCC-CeeecCCCceecccccccccCCCCEEEECCCcCCchhhhhhccH
Confidence 56677777764 469999999997 68999999999999988876543 5543333 467899
Q ss_pred HHHHHHHHHHhCCCEEEEEchhHHHHHHHcCCCCCCC----------------------------CCCeEcCCCCCCHHH
Q 023800 62 VLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK----------------------------DGKVVTTRGPGTPME 113 (277)
Q Consensus 62 ~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~----------------------------dg~~iT~~g~~~~~~ 113 (277)
.+++||+++++++++|++||+|++ +|+++|+|+||+ |||++||+|+.++++
T Consensus 92 ~l~~~l~~~~~~~~~i~aic~G~~-~La~agll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~~v~dg~~~T~~g~~~~~d 170 (195)
T cd03138 92 ALIAWLRRQHANGATVAAACTGVF-LLAEAGLLDGRRATTHWWLAPQFRRRFPKVRLDPDRVVVTDGNLITAGGAMAWAD 170 (195)
T ss_pred HHHHHHHHHHHcCCEEEEecHHHH-HHHHccCcCCCeeeehHhhHHHHHHHCCCceeccCcEEEeCCCEEEcccHHHHHH
Confidence 999999999999999999999999 999999999987 899999999999999
Q ss_pred HHHHHHHHhcChhHHHHHhhccccc
Q 023800 114 FVVALVEQLYGKGKADEVSGARVMR 138 (277)
Q Consensus 114 ~a~~li~~l~g~~~a~~v~~~~~~~ 138 (277)
|++++++++.|++.|+++++.|.++
T Consensus 171 ~al~li~~~~G~~~a~~va~~l~~~ 195 (195)
T cd03138 171 LALHLIERLAGPELAQLVARFLLID 195 (195)
T ss_pred HHHHHHHHHhCHHHHHHHHHHhccC
Confidence 9999999999999999999988753
No 6
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=99.91 E-value=1.5e-23 Score=165.01 Aligned_cols=114 Identities=25% Similarity=0.357 Sum_probs=105.1
Q ss_pred CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhh
Q 023800 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA 239 (277)
Q Consensus 160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~ 239 (277)
++||+|+++|||++.|+..++++|+.+|++++++|++++ +++++.|..+.++.++++.+..+||+|+||||......+.
T Consensus 1 ~~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~-~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~ 79 (142)
T cd03132 1 GRKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLG-GVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALA 79 (142)
T ss_pred CCEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcC-ceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHc
Confidence 368999999999999999999999999999999999998 9999999999999999987666899999999865444457
Q ss_pred cCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCC
Q 023800 240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLL 275 (277)
Q Consensus 240 ~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL 275 (277)
.++.+.+||+++++++++|+++|+|++ +||++|||
T Consensus 80 ~~~~l~~~l~~~~~~~~~I~aic~G~~-~La~aGll 114 (142)
T cd03132 80 PSGRALHFVTEAFKHGKPIGAVGEGSD-LLEAAGIP 114 (142)
T ss_pred cChHHHHHHHHHHhcCCeEEEcCchHH-HHHHcCCC
Confidence 789999999999999999999999999 99999985
No 7
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.91 E-value=9.5e-24 Score=172.96 Aligned_cols=135 Identities=23% Similarity=0.377 Sum_probs=123.0
Q ss_pred CchhhHHHHHHhCC-----CeEEEEeeCCCceeecCCCCEEecCccccccccC------CCccchhccccChHHHHHHHH
Q 023800 1 MEAVITIDVLRRSG-----ADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGATNLKESEVLESIVKK 69 (277)
Q Consensus 1 ~E~~~~~~~l~~~~-----~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~------gG~~~~~~~~~~~~~~~~l~~ 69 (277)
.|+..++++|++++ |+|.++|+++ .+|++++|+.+.+|..+++...+ || .+...+..++.+++||++
T Consensus 12 ~~~~~~~d~~~~a~~~~~~~~v~~vs~~~-~~v~~~~g~~i~~d~~~~~~~~~D~lvipgg-~~~~~~~~~~~~~~~l~~ 89 (183)
T cd03139 12 LDVIGPYEVFGRAPRLAAPFEVFLVSETG-GPVSSRSGLTVLPDTSFADPPDLDVLLVPGG-GGTRALVNDPALLDFIRR 89 (183)
T ss_pred ehheeHHHHHHHhhccCCCEEEEEEECCC-CceEeCCCCEEcCCcccccCCCCCEEEECCC-cchhhhccCHHHHHHHHH
Confidence 47889999999998 9999999987 68999999999999999865433 76 355557889999999999
Q ss_pred HHhCCCEEEEEchhHHHHHHHcCCCCCCC--------------------------CCCeEcCCCCCCHHHHHHHHHHHhc
Q 023800 70 QASDGRLYAAICVFLAVALGSWGLLKGLK--------------------------DGKVVTTRGPGTPMEFVVALVEQLY 123 (277)
Q Consensus 70 ~~~~g~~i~aiC~g~~~~La~aGll~g~~--------------------------dg~~iT~~g~~~~~~~a~~li~~l~ 123 (277)
+++++|+|+++|+|++ +|+++|+|+||+ |||++||+|+.++.+|++++|+++.
T Consensus 90 ~~~~~k~i~aic~g~~-~La~agll~g~~~t~~~~~~~~~~~~~~~~~~~~~~v~dg~i~T~~g~~a~~~~~l~ii~~~~ 168 (183)
T cd03139 90 QAARAKYVTSVCTGAL-LLAAAGLLDGRRATTHWAAIDWLKEFGAIVVVDARWVVDGNIWTSGGVSAGIDMALALVARLF 168 (183)
T ss_pred hcccCCEEEEEchHHH-HHHhcCCcCCCeeeecHhHHHHHHHhCCCCCCCCEEEecCCEEEcCcHHHHHHHHHHHHHHHh
Confidence 9999999999999999 999999999997 7999999999999999999999999
Q ss_pred ChhHHHHHhhccccc
Q 023800 124 GKGKADEVSGARVMR 138 (277)
Q Consensus 124 g~~~a~~v~~~~~~~ 138 (277)
|++.++++++.|.++
T Consensus 169 g~~~a~~~a~~~~~~ 183 (183)
T cd03139 169 GEELAQAVALLIEYD 183 (183)
T ss_pred CHHHHHHHHHHhccC
Confidence 999999999998864
No 8
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=99.91 E-value=1.1e-23 Score=172.98 Aligned_cols=134 Identities=22% Similarity=0.302 Sum_probs=120.3
Q ss_pred CchhhHHHHHHhCC-------CeEEEEeeCCCceeecCCCCEEecCccccccccC------CCccchhccccChHHHHHH
Q 023800 1 MEAVITIDVLRRSG-------ADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGATNLKESEVLESIV 67 (277)
Q Consensus 1 ~E~~~~~~~l~~~~-------~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~------gG~~~~~~~~~~~~~~~~l 67 (277)
.|+..|+|+|+.++ |+|+++|.++ .++++++|+.+.+|..+.+..+. ||. +.. ++.++.+++||
T Consensus 12 ~~~~~~~dv~~~a~~~~~~~~~~v~~vs~~~-~~v~~~~g~~i~~d~~~~~~~~~D~liipgg~-~~~-~~~~~~~~~~l 88 (185)
T cd03136 12 LALASAIEPLRAANRLAGRELYRWRVLSLDG-APVTSSNGLRVAPDAALEDAPPLDYLFVVGGL-GAR-RAVTPALLAWL 88 (185)
T ss_pred HHHHHHHHHHHHHHHhcCCcceEEEEEcCCC-CeeecCCCcEEeCCccccccCCCCEEEEeCCC-Ccc-ccCCHHHHHHH
Confidence 36788999998764 9999999987 68999999999999988765443 664 333 68899999999
Q ss_pred HHHHhCCCEEEEEchhHHHHHHHcCCCCCCC---------------------------CCCeEcCCCCCCHHHHHHHHHH
Q 023800 68 KKQASDGRLYAAICVFLAVALGSWGLLKGLK---------------------------DGKVVTTRGPGTPMEFVVALVE 120 (277)
Q Consensus 68 ~~~~~~g~~i~aiC~g~~~~La~aGll~g~~---------------------------dg~~iT~~g~~~~~~~a~~li~ 120 (277)
+++++++++|+++|+|++ +|+++|+|+||+ |||+||++|+.++++|++++++
T Consensus 89 ~~~~~~~~~i~aic~g~~-~La~aGll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~v~dg~i~Ta~g~~~~~d~~l~ii~ 167 (185)
T cd03136 89 RRAARRGVALGGIDTGAF-LLARAGLLDGRRATVHWEHLEAFAEAFPRVQVTRDLFEIDGDRLTCAGGTAALDLMLELIA 167 (185)
T ss_pred HHHHhcCCEEEEEcHHHH-HHHHccccCCCeeEECcccHHHHHHHCCCCccccCeEEEcCCEEEeccHHHHHHHHHHHHH
Confidence 999999999999999999 999999999997 8999999999999999999999
Q ss_pred HhcChhHHHHHhhccccc
Q 023800 121 QLYGKGKADEVSGARVMR 138 (277)
Q Consensus 121 ~l~g~~~a~~v~~~~~~~ 138 (277)
++.|++.|+++++.|+++
T Consensus 168 ~~~g~~~a~~va~~~~~~ 185 (185)
T cd03136 168 RDHGAALAARVAEQFLHD 185 (185)
T ss_pred HHhCHHHHHHHHHHHccC
Confidence 999999999999998764
No 9
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=99.89 E-value=1.7e-22 Score=164.99 Aligned_cols=114 Identities=46% Similarity=0.711 Sum_probs=102.9
Q ss_pred eEEEEecCCCchhhHHHHHHHHHhCCCeEEE--EeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhh
Q 023800 162 QILVPIANGSEEMEAVIIIDILRRAKANVVV--ASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA 239 (277)
Q Consensus 162 kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~--vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~ 239 (277)
||+|+++|||+++|+..|+++|+.+|+++++ +|++++.+++++.|+.+.++..+++++.++||+|+||||......+.
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~~~~~~~s~~g~~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~~~~~~~~ 80 (179)
T TIGR01383 1 KVLVPLAPGFEEMEAVITVDVLRRAGIKVTVAIVGLNGKLPVKGSRGVKILADASLEDVDLEEFDAIVLPGGMPGAENLR 80 (179)
T ss_pred CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEEeccCCCcceEcCCCCEEeCCCCHHHCCcccCCEEEECCCchHHHHHh
Confidence 6999999999999999999999999987775 99986448999999999999999987667899999999864345566
Q ss_pred cCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800 240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276 (277)
Q Consensus 240 ~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~ 276 (277)
.++.+.+||+++++++++|+++|+|++ +||++|||+
T Consensus 81 ~~~~l~~~l~~~~~~~~~i~~ic~G~~-~La~aGlL~ 116 (179)
T TIGR01383 81 NSKLLLNILKKQESKGKLVAAICAAPA-VLLAAGVLL 116 (179)
T ss_pred hCHHHHHHHHHHHHCCCEEEEEChhHH-HHHhcCCCC
Confidence 789999999999999999999999999 999999997
No 10
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=99.89 E-value=2.8e-22 Score=161.13 Aligned_cols=112 Identities=45% Similarity=0.667 Sum_probs=102.7
Q ss_pred EEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEE-cccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcC
Q 023800 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEIL-ASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKS 241 (277)
Q Consensus 163 V~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~-~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~ 241 (277)
|+|+++|||+++|+..++++|+.+||+++++|++++ ++. ++.|+.+.++..+++.++.+||+|+||||......+..+
T Consensus 1 v~il~~~gf~~~e~~~~~~~~~~a~~~v~~vs~~~~-~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~~~~~~ 79 (163)
T cd03135 1 VLVILADGFEEIEAVTPVDVLRRAGIEVTTASLEKK-LAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADN 79 (163)
T ss_pred CEEEecCCcchHHHHHHHHHHHHCCCEEEEEEcCCC-ceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHHHHHhC
Confidence 689999999999999999999999999999999998 665 679999999999998766789999999996335556789
Q ss_pred HHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800 242 KKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276 (277)
Q Consensus 242 ~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~ 276 (277)
+++.+||+++++++++|+++|+|++ +||++|||+
T Consensus 80 ~~l~~~l~~~~~~~~~i~~ic~g~~-~La~aglL~ 113 (163)
T cd03135 80 EKLIKLLKEFNAKGKLIAAICAAPA-VLAKAGLLK 113 (163)
T ss_pred HHHHHHHHHHHHcCCEEEEEchhHH-HHHHcCCcC
Confidence 9999999999999999999999999 999999997
No 11
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=99.89 E-value=2.2e-22 Score=161.77 Aligned_cols=120 Identities=48% Similarity=0.756 Sum_probs=106.6
Q ss_pred CchhhHHHHHHhCCCeEEEEeeCCCceee-cCCCCEEecCccccccc--cC------CCccchhccccChHHHHHHHHHH
Q 023800 1 MEAVITIDVLRRSGADVVVASVEKQLRVD-ACHGVKIVADALVSNCR--DA------CGMPGATNLKESEVLESIVKKQA 71 (277)
Q Consensus 1 ~E~~~~~~~l~~~~~~v~~~s~~~~~~v~-~~~g~~v~~d~~~~~~~--~~------gG~~~~~~~~~~~~~~~~l~~~~ 71 (277)
.|+..|+++|+.++|+++++|+++ .++. ++.|+.+.+|..+++.+ ++ ||..+...+.+++++++||++++
T Consensus 12 ~e~~~~~~~~~~a~~~v~~vs~~~-~~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~ 90 (163)
T cd03135 12 IEAVTPVDVLRRAGIEVTTASLEK-KLAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFN 90 (163)
T ss_pred HHHHHHHHHHHHCCCEEEEEEcCC-CceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHHHHHhCHHHHHHHHHHH
Confidence 378899999999999999999997 4554 68999999999998863 22 76424566678999999999999
Q ss_pred hCCCEEEEEchhHHHHHHHcCCCCCCC-----------------------CCCeEcCCCCCCHHHHHHHHHHHh
Q 023800 72 SDGRLYAAICVFLAVALGSWGLLKGLK-----------------------DGKVVTTRGPGTPMEFVVALVEQL 122 (277)
Q Consensus 72 ~~g~~i~aiC~g~~~~La~aGll~g~~-----------------------dg~~iT~~g~~~~~~~a~~li~~l 122 (277)
+++++|++||+|++ +|+++|+|+||+ |||+|||+|+.+++||++++++++
T Consensus 91 ~~~~~i~~ic~g~~-~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~v~dg~l~T~~g~~s~~d~al~li~~l 163 (163)
T cd03135 91 AKGKLIAAICAAPA-VLAKAGLLKGKKATCYPGFEDKLGGANYVDEPVVVDGNIITSRGPGTAFEFALKIVEAL 163 (163)
T ss_pred HcCCEEEEEchhHH-HHHHcCCcCCCeEEECchHHHhcCCCeEecCCEEEECCEEEcCCcccHHHHHHHHHHhC
Confidence 99999999999999 999999999997 999999999999999999999975
No 12
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=99.88 E-value=9e-22 Score=171.92 Aligned_cols=155 Identities=18% Similarity=0.288 Sum_probs=127.9
Q ss_pred CeEEEEeeCCCceeecCCCCEEecCccccccccC------CCccchhccccChHHHHHHHHHHhCCCEEEEEchhHHHHH
Q 023800 15 ADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVAL 88 (277)
Q Consensus 15 ~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~------gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~L 88 (277)
|.+..+|.++ .+|++++|+.|.+|..+++.... ||. ........+++.+||++.+++|..|++||+|+| +|
T Consensus 45 ~~w~~~s~~g-~~V~ss~G~~i~~d~~~~~~~~~~~v~v~~g~-~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf-~L 121 (328)
T COG4977 45 YVWSIVSADG-GPVRSSSGLSIAPDGGLEAAPPIDILPVCGGL-GPERPVNAPALLAWLRRAARRGARLGGLCTGAF-VL 121 (328)
T ss_pred cceEEeecCC-CCcccCCCceEecCCcccccCcceEEEEecCC-CcccccchHHHHHHHHHHHhcCCeEEEehHhHH-HH
Confidence 6799999998 59999999999999999887643 442 344444448999999999999999999999999 99
Q ss_pred HHcCCCCCCC---------------------------CCCeEcCCCCCCHHHHHHHHHHHhcChhHHHHHhhcccccccC
Q 023800 89 GSWGLLKGLK---------------------------DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANH 141 (277)
Q Consensus 89 a~aGll~g~~---------------------------dg~~iT~~g~~~~~~~a~~li~~l~g~~~a~~v~~~~~~~~~~ 141 (277)
|++||||||+ ||++|||+|.++++|++++||++.+|.+.|.+|++.+++++.+
T Consensus 122 A~aGLLdGrrattHW~~~~~f~e~FP~v~~~~~lfviDg~~~T~aG~~a~iDl~L~lI~~~~G~~~a~~va~~lv~~~~R 201 (328)
T COG4977 122 AEAGLLDGRRATTHWEHAEDFQERFPDVRVTDRLFVIDGDRITCAGGTAAIDLMLALIRRDFGAALANRVARQLVVDPIR 201 (328)
T ss_pred HHhcccCCCCeeeccccHHHHHHhCCCCCCCCceEEecCCEEEcCCchHHHHHHHHHHHHHhCHHHHHHHHHHhhhcccc
Confidence 9999999999 9999999999999999999999999999999999999999766
Q ss_pred CCchhhcccCccccccCCCCeEEEEecCCCchhhHHHHHHHHHhC
Q 023800 142 GDEFTIAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRA 186 (277)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~kV~ill~~g~~~~e~~~~~~~l~~a 186 (277)
... ...++......+.....+...++.++..
T Consensus 202 ~~~--------------~~Q~~~~~~~~~~~~~~l~~~i~~me~n 232 (328)
T COG4977 202 SGG--------------DRQRLPLLGRLGHRDPRLLRAIELMEAN 232 (328)
T ss_pred CCC--------------ccccccccccCCCCCHHHHHHHHHHHHh
Confidence 532 1123334444555666666666666653
No 13
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=99.87 E-value=8.5e-22 Score=158.79 Aligned_cols=112 Identities=29% Similarity=0.470 Sum_probs=104.1
Q ss_pred eEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeC-CCceEEcccCc-EEEeCcchhhhccCCccEEEEcCCcchHHhhh
Q 023800 162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVA-DKLEILASCQV-KLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA 239 (277)
Q Consensus 162 kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~-~~~~v~~~~g~-~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~ 239 (277)
||+|+++|||++.|+..+.+.|+++|++++++|++ ++ +++++.|. .+.++..+++.++.+||+|+||||. ....+.
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~v~~vs~~~~~-~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~-~~~~~~ 78 (165)
T cd03134 1 KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGG-EIQGKHGYDTVTVDLTIADVDADDYDALVIPGGT-NPDKLR 78 (165)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHCCCEEEEEccCCCc-ccccCcCceeecCCCChHHCCHHHCCEEEECCCC-Chhhhc
Confidence 68999999999999999999999999999999999 77 99999999 9999999998766689999999996 455567
Q ss_pred cCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800 240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276 (277)
Q Consensus 240 ~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~ 276 (277)
.++.+.+||+++++++++|+++|+|++ +||++|+|+
T Consensus 79 ~~~~~~~~l~~~~~~~~~i~~ic~G~~-~La~aglL~ 114 (165)
T cd03134 79 RDPDAVAFVRAFAEAGKPVAAICHGPW-VLISAGVVR 114 (165)
T ss_pred cCHHHHHHHHHHHHcCCeEEEEchHHH-HHHhcCccC
Confidence 789999999999999999999999999 999999997
No 14
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=99.87 E-value=1.3e-21 Score=157.83 Aligned_cols=112 Identities=28% Similarity=0.440 Sum_probs=103.9
Q ss_pred eEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcC
Q 023800 162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKS 241 (277)
Q Consensus 162 kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~ 241 (277)
||+|+++|||++.|+..|+++|+++|+++.++|.+++ ++.++.|+.+.++..++++++.+||+|+||||.. ...+..+
T Consensus 1 ~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~-~~~~~~~ 78 (166)
T TIGR01382 1 KLLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAG-TTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRA-PEYLRLN 78 (166)
T ss_pred CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEecCCC-ceeccCCceeeccCChhhCCHHHCcEEEECCCCC-HHHhccC
Confidence 6899999999999999999999999999999999988 9999999999999999987766899999999964 5555678
Q ss_pred HHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800 242 KKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276 (277)
Q Consensus 242 ~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~ 276 (277)
+.+.+||+++++++++|+++|+|++ +||++|||+
T Consensus 79 ~~l~~~l~~~~~~~~~i~~ic~G~~-~La~aglL~ 112 (166)
T TIGR01382 79 NKAVRLVREFVEKGKPVAAICHGPQ-LLISAGVLR 112 (166)
T ss_pred HHHHHHHHHHHHcCCEEEEEChHHH-HHHhcCccC
Confidence 8999999999999999999999999 999999997
No 15
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=99.87 E-value=2.7e-21 Score=160.24 Aligned_cols=118 Identities=48% Similarity=0.643 Sum_probs=103.0
Q ss_pred CCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCC--CceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHH
Q 023800 159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVAD--KLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ 236 (277)
Q Consensus 159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~--~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~ 236 (277)
++|||+|+++|||++.|+..|+++|+++++++.++|.++ +.+|+++.|+.+.+|..+++++.++||+|+||||.....
T Consensus 1 ~~~~~~il~~~g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~~ 80 (196)
T PRK11574 1 MSASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGAE 80 (196)
T ss_pred CCceEEEEeCCCcchhhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchhh
Confidence 358999999999999999999999999999999999864 237999999999999999987666899999999864455
Q ss_pred hhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800 237 AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276 (277)
Q Consensus 237 ~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~ 276 (277)
.+..++.+.+||+++++++++|++||+|++++|+.+|+|+
T Consensus 81 ~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~~gll~ 120 (196)
T PRK11574 81 CFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFP 120 (196)
T ss_pred hhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHhCCccC
Confidence 5677889999999999999999999999982356688874
No 16
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=99.87 E-value=1.6e-21 Score=157.38 Aligned_cols=119 Identities=29% Similarity=0.362 Sum_probs=107.6
Q ss_pred CchhhHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCcccccccc---C-----CCccchhccccChHHHHHHHHHHh
Q 023800 1 MEAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRD---A-----CGMPGATNLKESEVLESIVKKQAS 72 (277)
Q Consensus 1 ~E~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~---~-----gG~~~~~~~~~~~~~~~~l~~~~~ 72 (277)
.|+..|+++|+++||+++++|.++ .+++++.|+.+.++..+++.+. + ||. +...+..++.+.+||+++++
T Consensus 13 ~e~~~~~~~l~~ag~~v~~vs~~~-~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~-~~~~~~~~~~l~~~l~~~~~ 90 (166)
T TIGR01382 13 SELLYPLDRLREAGHEVDTVSKEA-GTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGR-APEYLRLNNKAVRLVREFVE 90 (166)
T ss_pred HHHHHHHHHHHHCCCEEEEEecCC-CceeccCCceeeccCChhhCCHHHCcEEEECCCC-CHHHhccCHHHHHHHHHHHH
Confidence 378999999999999999999987 6899999999999999987652 2 763 45556678999999999999
Q ss_pred CCCEEEEEchhHHHHHHHcCCCCCCC--------------------------CCCeEcCCCCCCHHHHHHHHHHHh
Q 023800 73 DGRLYAAICVFLAVALGSWGLLKGLK--------------------------DGKVVTTRGPGTPMEFVVALVEQL 122 (277)
Q Consensus 73 ~g~~i~aiC~g~~~~La~aGll~g~~--------------------------dg~~iT~~g~~~~~~~a~~li~~l 122 (277)
++++|++||+|++ +||++|||+||+ |||+|||+|++++.+|+.++++++
T Consensus 91 ~~~~i~~ic~G~~-~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~~~~~~~~~fa~~~~~~l 165 (166)
T TIGR01382 91 KGKPVAAICHGPQ-LLISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIEVVVVDGNLVTSRVPDDLPAFNREFLKLL 165 (166)
T ss_pred cCCEEEEEChHHH-HHHhcCccCCCEEEcCccHHHHHHHCCCeEEcCCCEEEECCEEEeCCcccHHHHHHHHHHHh
Confidence 9999999999999 999999999998 899999999999999999999986
No 17
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=99.85 E-value=1.3e-21 Score=165.25 Aligned_cols=121 Identities=23% Similarity=0.296 Sum_probs=103.4
Q ss_pred CchhhHHHHHHhCCCeEEEEeeCCCcee---------------------ecCCCCEEecCccccccccC--------CCc
Q 023800 1 MEAVITIDVLRRSGADVVVASVEKQLRV---------------------DACHGVKIVADALVSNCRDA--------CGM 51 (277)
Q Consensus 1 ~E~~~~~~~l~~~~~~v~~~s~~~~~~v---------------------~~~~g~~v~~d~~~~~~~~~--------gG~ 51 (277)
.|++.|+++|+++||+|+++|++++.++ .++++..+..+..+++++.. ||+
T Consensus 25 ~E~~~p~~~l~~aG~~VdiaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYDav~iPGG~ 104 (231)
T cd03147 25 SEALHPFNVFREAGFEVDFVSETGTFGFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYGIFFVAGGH 104 (231)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCcEEEECCCC
Confidence 4899999999999999999999863111 12344566777888876532 887
Q ss_pred cchhccccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHc-------CCCCCCC--------------------------
Q 023800 52 PGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSW-------GLLKGLK-------------------------- 98 (277)
Q Consensus 52 ~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a-------Gll~g~~-------------------------- 98 (277)
+++..+++|+++++++++|+++||+|+||||||+ +|+.+ ++++||+
T Consensus 105 g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~-~L~~a~~~~~g~~ll~Gk~vT~~~~~ee~~~~~~~~~~~~~~~~~ 183 (231)
T cd03147 105 GTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPA-ILANLKDPKTGKPLIKGKTVTGFTDKGEEIMGVMEILKKRNLESI 183 (231)
T ss_pred chhhhcccCHHHHHHHHHHHHcCCEEEEEChHHH-HHHhhhcccCCCcccCCCEEEeeCcHHHHhhhhhhhhcccCCccH
Confidence 7778899999999999999999999999999999 89987 8999887
Q ss_pred ------------------------CCCeEcCCCCCCHHHHHHHHHHHh
Q 023800 99 ------------------------DGKVVTTRGPGTPMEFVVALVEQL 122 (277)
Q Consensus 99 ------------------------dg~~iT~~g~~~~~~~a~~li~~l 122 (277)
|||+||+++|.++.+||+.++++|
T Consensus 184 e~~l~~~Ga~~~~~~~~~~~~VvvDgnLITgq~p~sa~~~a~~iv~~l 231 (231)
T cd03147 184 EDIAERAGANFIRPPGPWDDFTVVDGRIVTGSNPASATSTAEAAIKAL 231 (231)
T ss_pred HHHHHHcCCEEEccCCCCCCcEEEcCCEEeCCCcccHHHHHHHHHHhC
Confidence 899999999999999999999975
No 18
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.85 E-value=1e-20 Score=153.36 Aligned_cols=118 Identities=28% Similarity=0.388 Sum_probs=104.0
Q ss_pred CchhhHHHHHHhC-CCeEEEEeeCCCceeecCCCCEEecCccccccc--c-C-----CCccchhccccChHHHHHHHHHH
Q 023800 1 MEAVITIDVLRRS-GADVVVASVEKQLRVDACHGVKIVADALVSNCR--D-A-----CGMPGATNLKESEVLESIVKKQA 71 (277)
Q Consensus 1 ~E~~~~~~~l~~~-~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~--~-~-----gG~~~~~~~~~~~~~~~~l~~~~ 71 (277)
+|+++|+++|++. +|+++++|+++ .++++++|+.+.++..+++.+ + + ||. ... ...++.+++|||+++
T Consensus 12 ~e~~~~~~~l~~~~~~~~~~~s~~~-~~v~ss~g~~i~~~~~~~~~~~~~~D~l~I~Gg~-~~~-~~~~~~l~~~l~~~~ 88 (170)
T cd03140 12 WEGAYLAALLNSYEGFEVRTVSPTG-EPVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGD-SWD-NPEAPDLAGLVRQAL 88 (170)
T ss_pred hHHHHHHHHhcccCCcEEEEEeCCC-CeeEecCCeEEccccchhHCCHhHccEEEEcCCc-ccc-cCCcHHHHHHHHHHH
Confidence 5899999999997 89999999997 689999999999999998873 2 2 764 333 347899999999999
Q ss_pred hCCCEEEEEchhHHHHHHHcCCCCCCC-----------------------------CCCeEcCCCCCCHHHHHHHHHHHh
Q 023800 72 SDGRLYAAICVFLAVALGSWGLLKGLK-----------------------------DGKVVTTRGPGTPMEFVVALVEQL 122 (277)
Q Consensus 72 ~~g~~i~aiC~g~~~~La~aGll~g~~-----------------------------dg~~iT~~g~~~~~~~a~~li~~l 122 (277)
+++++|++||+|++ +||++|+|+||+ |||+|||+|++ ++||++++++.+
T Consensus 89 ~~~~~i~aic~G~~-~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~~g~a-~~d~al~~i~~l 166 (170)
T cd03140 89 KQGKPVAAICGATL-ALARAGLLNNRKHTSNSLDFLKAHAPYYGGAEYYDEPQAVSDGNLITANGTA-PVEFAAEILRAL 166 (170)
T ss_pred HcCCEEEEEChHHH-HHHHCCCcCCCcccCChHHHHHHhccccCcccccccCcEEEcCCEEECCCcC-HHHHHHHHHHHc
Confidence 99999999999999 999999999998 99999998755 799999999987
Q ss_pred c
Q 023800 123 Y 123 (277)
Q Consensus 123 ~ 123 (277)
.
T Consensus 167 ~ 167 (170)
T cd03140 167 D 167 (170)
T ss_pred C
Confidence 4
No 19
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=99.84 E-value=1.7e-20 Score=167.06 Aligned_cols=137 Identities=23% Similarity=0.327 Sum_probs=120.4
Q ss_pred CchhhHHHHHHhC-------CCeEEEEeeCCCceeecCCCCEEecCccccccccC------CCccchhccccChHHHHHH
Q 023800 1 MEAVITIDVLRRS-------GADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGATNLKESEVLESIV 67 (277)
Q Consensus 1 ~E~~~~~~~l~~~-------~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~------gG~~~~~~~~~~~~~~~~l 67 (277)
+|+..|.++|+.+ .|+|.++|.++ .+|++++|+.+.+|..+++.+.. || .+.. ...++.+.+||
T Consensus 23 ~~~~~~~dvl~~a~~~~~~~~~~v~~vs~~~-~~v~ss~g~~i~~d~~~~~~~~~D~livpGg-~~~~-~~~~~~l~~~l 99 (322)
T PRK09393 23 FEFGCAVEIFGLPRPELGVDWYRFAVAAVEP-GPLRAAGGITVVADGGLELLDRADTIVIPGW-RGPD-APVPEPLLEAL 99 (322)
T ss_pred hHHHHHHHHHHHHHhhcCCCceEEEEEECCC-CceEeCCCcEEeCCCCccccCCCCEEEECCC-Cccc-ccCCHHHHHHH
Confidence 4788899999543 27999999987 68999999999999999876543 55 3333 35689999999
Q ss_pred HHHHhCCCEEEEEchhHHHHHHHcCCCCCCC----------------------------CCCeEcCCCCCCHHHHHHHHH
Q 023800 68 KKQASDGRLYAAICVFLAVALGSWGLLKGLK----------------------------DGKVVTTRGPGTPMEFVVALV 119 (277)
Q Consensus 68 ~~~~~~g~~i~aiC~g~~~~La~aGll~g~~----------------------------dg~~iT~~g~~~~~~~a~~li 119 (277)
+++++++++|++||+|++ +||++|||+|++ |||++||+|+.++++++++++
T Consensus 100 ~~~~~~~~~i~aic~g~~-~La~aGlL~~~~~Tth~~~~~~~~~~~p~~~~~~~~~~v~~g~iiT~~G~~a~~d~~l~li 178 (322)
T PRK09393 100 RAAHARGARLCSICSGVF-VLAAAGLLDGRRATTHWRYAERLQARYPAIRVDPDVLYVDEGQILTSAGSAAGIDLCLHLV 178 (322)
T ss_pred HHHHHcCCEEEEEcHHHH-HHHhccCCCCCeeeecHhhHHHHHHHCCCCEEeCCceEEecCCEEecccHHHHHHHHHHHH
Confidence 999999999999999999 999999999998 799999999999999999999
Q ss_pred HHhcChhHHHHHhhcccccccC
Q 023800 120 EQLYGKGKADEVSGARVMRANH 141 (277)
Q Consensus 120 ~~l~g~~~a~~v~~~~~~~~~~ 141 (277)
++..|.+.++++++.|.++..+
T Consensus 179 ~~~~g~~~a~~va~~ll~~~~~ 200 (322)
T PRK09393 179 RRDFGSEAANRVARRLVVPPHR 200 (322)
T ss_pred HHHhCHHHHHHHHHHhCcCcCC
Confidence 9999999999999999987544
No 20
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=99.84 E-value=9.8e-21 Score=152.59 Aligned_cols=117 Identities=29% Similarity=0.409 Sum_probs=105.8
Q ss_pred CchhhHHHHHHhCCCeEEEEeeC-CCceeecCCCC-EEecCcccccccc---C-----CCccchhccccChHHHHHHHHH
Q 023800 1 MEAVITIDVLRRSGADVVVASVE-KQLRVDACHGV-KIVADALVSNCRD---A-----CGMPGATNLKESEVLESIVKKQ 70 (277)
Q Consensus 1 ~E~~~~~~~l~~~~~~v~~~s~~-~~~~v~~~~g~-~v~~d~~~~~~~~---~-----gG~~~~~~~~~~~~~~~~l~~~ 70 (277)
.|+..++++|++++|+++++|++ + .+++++.|. .+.+|..+++... + ||. +...+..++.+++||+++
T Consensus 13 ~e~~~~~~~l~~a~~~v~~vs~~~~-~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~-~~~~~~~~~~~~~~l~~~ 90 (165)
T cd03134 13 VELTYPLYRLREAGAEVVVAGPEAG-GEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGT-NPDKLRRDPDAVAFVRAF 90 (165)
T ss_pred HHHHHHHHHHHHCCCEEEEEccCCC-cccccCcCceeecCCCChHHCCHHHCCEEEECCCC-ChhhhccCHHHHHHHHHH
Confidence 37889999999999999999998 6 689999999 9999999987642 2 774 555567889999999999
Q ss_pred HhCCCEEEEEchhHHHHHHHcCCCCCCC-------------------------CCCeEcCCCCCCHHHHHHHHHH
Q 023800 71 ASDGRLYAAICVFLAVALGSWGLLKGLK-------------------------DGKVVTTRGPGTPMEFVVALVE 120 (277)
Q Consensus 71 ~~~g~~i~aiC~g~~~~La~aGll~g~~-------------------------dg~~iT~~g~~~~~~~a~~li~ 120 (277)
++++++|++||+|++ +|+++|+|+||+ |||+|||+|+.++++|+..+++
T Consensus 91 ~~~~~~i~~ic~G~~-~La~aglL~g~~~T~h~~~~~~~~~~~~~~~~~~~v~dg~iiT~~~~~~~~~f~~~~~~ 164 (165)
T cd03134 91 AEAGKPVAAICHGPW-VLISAGVVRGRKLTSYPSIKDDLINAGANWVDEEVVVDGNLITSRNPDDLPAFNRAILK 164 (165)
T ss_pred HHcCCeEEEEchHHH-HHHhcCccCCCEeeCCHhHHHHHHHcCCeEecCCEEEECCEEEecCcchHHHHHHHHHh
Confidence 999999999999999 999999999998 9999999999999999999986
No 21
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.84 E-value=9.6e-21 Score=153.46 Aligned_cols=110 Identities=23% Similarity=0.403 Sum_probs=100.5
Q ss_pred EEEEecCCCchhhHHHHHHHHHhC-CCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcC
Q 023800 163 ILVPIANGSEEMEAVIIIDILRRA-KANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKS 241 (277)
Q Consensus 163 V~ill~~g~~~~e~~~~~~~l~~a-~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~ 241 (277)
|+++++|||++.|++.+.+.|+++ +++++++|++++ +++++.|+.+.++..+++.++++||+|+||||.. .. ...+
T Consensus 1 ~~v~~~~~f~~~e~~~~~~~l~~~~~~~~~~~s~~~~-~v~ss~g~~i~~~~~~~~~~~~~~D~l~I~Gg~~-~~-~~~~ 77 (170)
T cd03140 1 IAVFLTDEFADWEGAYLAALLNSYEGFEVRTVSPTGE-PVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGDS-WD-NPEA 77 (170)
T ss_pred CEEEeccchhhhHHHHHHHHhcccCCcEEEEEeCCCC-eeEecCCeEEccccchhHCCHhHccEEEEcCCcc-cc-cCCc
Confidence 578999999999999999999997 799999999998 9999999999999999987656899999999963 22 3467
Q ss_pred HHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800 242 KKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276 (277)
Q Consensus 242 ~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~ 276 (277)
+.+.+||+++++++++|+++|+|++ +||++|||+
T Consensus 78 ~~l~~~l~~~~~~~~~i~aic~G~~-~La~aGlL~ 111 (170)
T cd03140 78 PDLAGLVRQALKQGKPVAAICGATL-ALARAGLLN 111 (170)
T ss_pred HHHHHHHHHHHHcCCEEEEEChHHH-HHHHCCCcC
Confidence 8999999999999999999999999 999999987
No 22
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=99.84 E-value=1.1e-20 Score=152.40 Aligned_cols=116 Identities=28% Similarity=0.439 Sum_probs=104.4
Q ss_pred chhhHHHHHHhCC-------CeEEEEeeCCCceeecCCCCEEecCccccccccC------CCccchhccccChHHHHHHH
Q 023800 2 EAVITIDVLRRSG-------ADVVVASVEKQLRVDACHGVKIVADALVSNCRDA------CGMPGATNLKESEVLESIVK 68 (277)
Q Consensus 2 E~~~~~~~l~~~~-------~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~------gG~~~~~~~~~~~~~~~~l~ 68 (277)
|+..++++|+.++ |+++++|.++ .+|++++|+.+.++..+++.... ||. ..+....++.+.+||+
T Consensus 10 ~~~~~~d~l~~a~~~~~~~~~~~~~vs~~~-~~v~~s~g~~i~~~~~~~~~~~~D~lvvpg~~-~~~~~~~~~~l~~~l~ 87 (166)
T PF13278_consen 10 ELAGPLDVLRAANRLSGEPLFEVRLVSPTG-GPVTSSSGLRIQPDGSLDDAPDFDILVVPGGP-GFDAAAKDPALLDWLR 87 (166)
T ss_dssp HHHHHHHHHTTCTHHCTTTTEEEEEEESSS-CEEEBTTSEEEEESEETCCCSCCSEEEEE-ST-THHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHhchhhcCCCCeEEEEEecCC-CeeeecCCeEEEeccChhhcccCCEEEeCCCC-CchhcccCHHHHHHhh
Confidence 7889999999988 9999999997 69999999999999999986543 664 3455678899999999
Q ss_pred HHHhCCCEEEEEchhHHHHHHHcCCCCCCC----------------------------CCCeEcCCCCCCHHHHHHHHHH
Q 023800 69 KQASDGRLYAAICVFLAVALGSWGLLKGLK----------------------------DGKVVTTRGPGTPMEFVVALVE 120 (277)
Q Consensus 69 ~~~~~g~~i~aiC~g~~~~La~aGll~g~~----------------------------dg~~iT~~g~~~~~~~a~~li~ 120 (277)
++++++++|+++|+|++ +||++|+|+|++ |||++||+|+.+++|+++++||
T Consensus 88 ~~~~~~~~i~aic~G~~-~La~aGlL~g~~~tt~~~~~~~l~~~~p~~~~~~~~~~v~dg~i~Ta~g~~~~~dl~l~li~ 166 (166)
T PF13278_consen 88 QQHAQGTYIAAICTGAL-LLAEAGLLDGRRATTHWSLAEALRERFPNVNVVSDQLFVDDGNIITAGGPTAAIDLALYLIE 166 (166)
T ss_dssp HHHCCTSEEEEETTHHH-HHHHTTTTTTSEE---GGGHHHHHHCTTCEEE-TSSSEEEETTEEEESSCCHHHHHHHHHHH
T ss_pred hhhccceEEeeeehHHH-HHhhhhccCcccccchHHHHHHHHHhCCCccccCCCEEEECCCeEEecHHHHHHHHHHHHhC
Confidence 99999999999999999 999999999999 9999999999999999999996
No 23
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.84 E-value=1.3e-20 Score=154.99 Aligned_cols=109 Identities=21% Similarity=0.327 Sum_probs=100.1
Q ss_pred EEEEecCCCchhhHHHHHHHHHhCC-------CeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchH
Q 023800 163 ILVPIANGSEEMEAVIIIDILRRAK-------ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA 235 (277)
Q Consensus 163 V~ill~~g~~~~e~~~~~~~l~~a~-------~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~ 235 (277)
|+|+++|||++.|+..+.|+|+.+| +++.++|++++ +++++.|+++.+|..+++. ++||+|+||||.. .
T Consensus 1 i~ill~~gf~~~~~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~-~v~~~~g~~v~~d~~~~~~--~~~D~liipGg~~-~ 76 (187)
T cd03137 1 VAVLVFPGVSLLDLSGPAEVFGEANRALGPPAYELRVCSPEGG-PVRSSSGLSLVADAGLDAL--AAADTVIVPGGPD-V 76 (187)
T ss_pred CEEEEeCCCChhHHhHHHHHHHHHHhhcCCCCeEEEEEeCCCC-ceeecCCcEEEcCcCcccc--CCCCEEEECCCcc-c
Confidence 5899999999999999999999998 89999999998 9999999999999998853 5799999999863 4
Q ss_pred HhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800 236 QAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276 (277)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~ 276 (277)
.....++.+.+||+++++++++|+++|+|++ +||++|+|+
T Consensus 77 ~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~-~La~aGlL~ 116 (187)
T cd03137 77 DGRPPPPALLAALRRAAARGARVASVCTGAF-VLAEAGLLD 116 (187)
T ss_pred ccccCCHHHHHHHHHHHhcCCEEEEECHHHH-HHHHccCcC
Confidence 4467899999999999999999999999999 999999997
No 24
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.84 E-value=2.9e-20 Score=152.08 Aligned_cols=120 Identities=25% Similarity=0.314 Sum_probs=104.0
Q ss_pred CchhhHHHHHHhCCCeEEEEeeCCCc--eeec-------------CCCCEEecCcccccccc---C-----CCccchhcc
Q 023800 1 MEAVITIDVLRRSGADVVVASVEKQL--RVDA-------------CHGVKIVADALVSNCRD---A-----CGMPGATNL 57 (277)
Q Consensus 1 ~E~~~~~~~l~~~~~~v~~~s~~~~~--~v~~-------------~~g~~v~~d~~~~~~~~---~-----gG~~~~~~~ 57 (277)
.|+..|+++|+++|++|+++|++++. +++. ..|..+.++..+++... + ||. +...+
T Consensus 13 ~e~~~p~~~l~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liv~GG~-~~~~~ 91 (180)
T cd03169 13 YEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFAVTADFDEVDPDDYDALVIPGGR-APEYL 91 (180)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCCCCccccccccccccccchhccCCcEEeccCCcccCCHhHCCEEEEcCCC-Chhhh
Confidence 38899999999999999999998741 3443 36899999999987642 2 774 45556
Q ss_pred ccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHcCCCCCCC-------------------------CCCeEcCCCCCCHH
Q 023800 58 KESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-------------------------DGKVVTTRGPGTPM 112 (277)
Q Consensus 58 ~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~-------------------------dg~~iT~~g~~~~~ 112 (277)
..++.+.+||+++++++++|++||+|++ +|+++|||+||+ |||+|||+|+.++.
T Consensus 92 ~~~~~~~~~l~~~~~~~k~i~~ic~G~~-~La~agll~g~~~T~h~~~~~~~~~~~~~~~~~~~v~D~~iiT~~~~~~~~ 170 (180)
T cd03169 92 RLDEKVLAIVRHFAEANKPVAAICHGPQ-ILAAAGVLKGRRCTAYPACKPEVELAGGTVVDDGVVVDGNLVTAQAWPDHP 170 (180)
T ss_pred ccCHHHHHHHHHHHHcCCEEEEECcHHH-HHHHcCccCCCEEecccchHHHHHHCCCEEeeccEEEECCEEEecCCchHH
Confidence 6789999999999999999999999999 999999999998 99999999999999
Q ss_pred HHHHHHHHHh
Q 023800 113 EFVVALVEQL 122 (277)
Q Consensus 113 ~~a~~li~~l 122 (277)
+|+.++++.|
T Consensus 171 ~f~~~~~~~l 180 (180)
T cd03169 171 AFLREFLKLL 180 (180)
T ss_pred HHHHHHHHhC
Confidence 9999999875
No 25
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.83 E-value=3.2e-20 Score=151.77 Aligned_cols=113 Identities=25% Similarity=0.446 Sum_probs=99.9
Q ss_pred eEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCc--eEEc-------------ccCcEEEeCcchhhhccCCccEE
Q 023800 162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKL--EILA-------------SCQVKLVADMLIDEAAKLSYDLI 226 (277)
Q Consensus 162 kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~--~v~~-------------~~g~~i~~~~~~~~~~~~~~D~l 226 (277)
||+|+++||+++.|+..|+++|+++|++++++|+++++ ++.+ ..|..+.++..++++++.+||+|
T Consensus 1 kv~il~~~g~~~~e~~~p~~~l~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l 80 (180)
T cd03169 1 KILILTGDFVEDYEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFAVTADFDEVDPDDYDAL 80 (180)
T ss_pred CEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCCCCccccccccccccccchhccCCcEEeccCCcccCCHhHCCEE
Confidence 68999999999999999999999999999999999862 2333 36899999999998776689999
Q ss_pred EEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800 227 VLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276 (277)
Q Consensus 227 ivpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~ 276 (277)
+||||. ....+..++.+.+||+++++++|+|++||+|++ +||++|||+
T Consensus 81 iv~GG~-~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~-~La~agll~ 128 (180)
T cd03169 81 VIPGGR-APEYLRLDEKVLAIVRHFAEANKPVAAICHGPQ-ILAAAGVLK 128 (180)
T ss_pred EEcCCC-ChhhhccCHHHHHHHHHHHHcCCEEEEECcHHH-HHHHcCccC
Confidence 999996 344455678999999999999999999999999 999999997
No 26
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.83 E-value=2.8e-20 Score=153.98 Aligned_cols=110 Identities=22% Similarity=0.359 Sum_probs=99.3
Q ss_pred EEEEecCCCchhhHHHHHHHHHhC------------CCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcC
Q 023800 163 ILVPIANGSEEMEAVIIIDILRRA------------KANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPG 230 (277)
Q Consensus 163 V~ill~~g~~~~e~~~~~~~l~~a------------~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpG 230 (277)
|+|+++|||..+++.+++|+|+.+ +|+++++|.+++ +|.++.|+.+.+|..+++. ++||+|+|||
T Consensus 1 i~ill~~gf~~~~~~~~~e~f~~an~~~~~~~~~~~~~~v~~vs~~~~-~v~s~~g~~i~~d~~~~~~--~~~D~liIpg 77 (195)
T cd03138 1 VTLLAYPGALASSLAGLLDLLRAANRLARRQQGGAPPFEVRLVSLDGG-PVLLAGGILILPDATLADV--PAPDLVIVPG 77 (195)
T ss_pred CEEEEcCCchHHHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEEcCCCC-eeecCCCceeccccccccc--CCCCEEEECC
Confidence 689999999999999999999974 489999999998 9999999999999988764 5899999999
Q ss_pred CcchHH--hhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800 231 GLGGAQ--AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276 (277)
Q Consensus 231 G~~~~~--~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~ 276 (277)
|..... .+..++.+.+||+++++++++|++||+|++ +||++|+|+
T Consensus 78 g~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~-~La~agll~ 124 (195)
T cd03138 78 LGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVF-LLAEAGLLD 124 (195)
T ss_pred CcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHH-HHHHccCcC
Confidence 854333 467899999999999999999999999999 999999997
No 27
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.83 E-value=2.1e-20 Score=153.14 Aligned_cols=109 Identities=18% Similarity=0.401 Sum_probs=101.1
Q ss_pred EEEEecCCCchhhHHHHHHHHHhCC-----CeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh
Q 023800 163 ILVPIANGSEEMEAVIIIDILRRAK-----ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA 237 (277)
Q Consensus 163 V~ill~~g~~~~e~~~~~~~l~~a~-----~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~ 237 (277)
|+|+++|||+++|+..++|+|+.+| +++.++|++++ +|++++|+.+.+|..+++. ..||+|+||||. ....
T Consensus 1 i~ill~~gf~~~~~~~~~d~~~~a~~~~~~~~v~~vs~~~~-~v~~~~g~~i~~d~~~~~~--~~~D~lvipgg~-~~~~ 76 (183)
T cd03139 1 VGILLFPGVEVLDVIGPYEVFGRAPRLAAPFEVFLVSETGG-PVSSRSGLTVLPDTSFADP--PDLDVLLVPGGG-GTRA 76 (183)
T ss_pred CEEEEeCCCCEehheeHHHHHHHhhccCCCEEEEEEECCCC-ceEeCCCCEEcCCcccccC--CCCCEEEECCCc-chhh
Confidence 5899999999999999999999999 99999999998 9999999999999998864 479999999995 3555
Q ss_pred hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800 238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276 (277)
Q Consensus 238 ~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~ 276 (277)
+..++.+.+||+++++++|+|+++|+|++ +|+++|+|+
T Consensus 77 ~~~~~~~~~~l~~~~~~~k~i~aic~g~~-~La~agll~ 114 (183)
T cd03139 77 LVNDPALLDFIRRQAARAKYVTSVCTGAL-LLAAAGLLD 114 (183)
T ss_pred hccCHHHHHHHHHhcccCCEEEEEchHHH-HHHhcCCcC
Confidence 67899999999999999999999999999 999999997
No 28
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=99.82 E-value=4.7e-20 Score=151.39 Aligned_cols=108 Identities=23% Similarity=0.315 Sum_probs=99.0
Q ss_pred EEEEecCCCchhhHHHHHHHHHhCC-------CeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchH
Q 023800 163 ILVPIANGSEEMEAVIIIDILRRAK-------ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA 235 (277)
Q Consensus 163 V~ill~~g~~~~e~~~~~~~l~~a~-------~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~ 235 (277)
|+|+++|||+.+|+..++|+|+.+| |+++++|.+++ +++++.|+.+.+|..+.+. .+||+|+||||.. .
T Consensus 1 i~il~~~g~~~~~~~~~~dv~~~a~~~~~~~~~~v~~vs~~~~-~v~~~~g~~i~~d~~~~~~--~~~D~liipgg~~-~ 76 (185)
T cd03136 1 FGFLLLPGFSLLALASAIEPLRAANRLAGRELYRWRVLSLDGA-PVTSSNGLRVAPDAALEDA--PPLDYLFVVGGLG-A 76 (185)
T ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCcceEEEEEcCCCC-eeecCCCcEEeCCcccccc--CCCCEEEEeCCCC-c
Confidence 6899999999999999999999886 89999999987 9999999999999988754 5799999999864 3
Q ss_pred HhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800 236 QAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276 (277)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~ 276 (277)
. ...++.+.+||++++++++.|+++|+|++ +||++|+|+
T Consensus 77 ~-~~~~~~~~~~l~~~~~~~~~i~aic~g~~-~La~aGll~ 115 (185)
T cd03136 77 R-RAVTPALLAWLRRAARRGVALGGIDTGAF-LLARAGLLD 115 (185)
T ss_pred c-ccCCHHHHHHHHHHHhcCCEEEEEcHHHH-HHHHccccC
Confidence 3 67899999999999999999999999999 999999997
No 29
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=99.82 E-value=3.7e-20 Score=146.49 Aligned_cols=107 Identities=37% Similarity=0.552 Sum_probs=96.3
Q ss_pred eEEEEeeCCCceeecCCC---CEEecCccccccccC--------CCccchhccccC-hHHHHHHHHHHhCCCEEEEEchh
Q 023800 16 DVVVASVEKQLRVDACHG---VKIVADALVSNCRDA--------CGMPGATNLKES-EVLESIVKKQASDGRLYAAICVF 83 (277)
Q Consensus 16 ~v~~~s~~~~~~v~~~~g---~~v~~d~~~~~~~~~--------gG~~~~~~~~~~-~~~~~~l~~~~~~g~~i~aiC~g 83 (277)
+|+++|+..+..|++++| ..+.+|..+++++.. ||+.++..++.+ +.+++++++|++++|+|+|||+|
T Consensus 1 ~V~~vs~~~~~~v~~~~g~~~~~v~~d~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g 80 (147)
T PF01965_consen 1 KVDVVSPGDGKEVTGSHGSFGIKVTPDKTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHG 80 (147)
T ss_dssp EEEEEESSSSSEEEBTTSHHHHEEESSEEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTC
T ss_pred CEEEEECCCCCeEEcCCCcCCEEEECCCcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCC
Confidence 589999987678999999 999999999998753 887658888855 99999999999999999999999
Q ss_pred HHHHHHHcCCCCCCC---------------------------CC-CeEcCCCCCCHHHHHHHHHHHhc
Q 023800 84 LAVALGSWGLLKGLK---------------------------DG-KVVTTRGPGTPMEFVVALVEQLY 123 (277)
Q Consensus 84 ~~~~La~aGll~g~~---------------------------dg-~~iT~~g~~~~~~~a~~li~~l~ 123 (277)
|. +|+++|+|+||+ |+ |+||++||.++.+|++.++++|.
T Consensus 81 ~~-~L~~~gll~g~~~T~~~~~~~~~~~~g~~~~~~~~~~vvD~~nlIT~~~~~~~~~fa~~ive~L~ 147 (147)
T PF01965_consen 81 PA-VLAAAGLLKGKKVTSYPNDEEDLENAGANYVDQDDPVVVDGGNLITGRGPGSAIEFALAIVEALG 147 (147)
T ss_dssp HH-HHHHTTTTTTSEEC-SGGGHHHHHHTTTEEBSCSSSEEEETTTEEEESSGGGHHHHHHHHHHHHT
T ss_pred cc-hhhccCccCCceeecCccHHHHHHHCCCEEEecCCCeEEECCeEEECCChhhHHHHHHHHHHHcC
Confidence 98 999999999999 99 99999999999999999999873
No 30
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=99.82 E-value=3.4e-20 Score=156.74 Aligned_cols=121 Identities=17% Similarity=0.180 Sum_probs=103.6
Q ss_pred CchhhHHHHHHhCCCeEEEEeeCCCceeec----------------CCCCEEecCccccccc--------cC------CC
Q 023800 1 MEAVITIDVLRRSGADVVVASVEKQLRVDA----------------CHGVKIVADALVSNCR--------DA------CG 50 (277)
Q Consensus 1 ~E~~~~~~~l~~~~~~v~~~s~~~~~~v~~----------------~~g~~v~~d~~~~~~~--------~~------gG 50 (277)
.|+++|+++|+++||+|+++|++++.+... .++..+..+..++++. ++ ||
T Consensus 26 ~El~~p~~~l~~aG~~V~~aS~~g~~~~~d~~s~~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~~~~~~~dYDav~iPGG 105 (232)
T cd03148 26 VEMLLPLYHLHAAGFDFDVATLSGLPVKFEYWAMPHEDEAVMPFFEKHKSKLRNPKKLADVVASLNADDSEYAAVFIPGG 105 (232)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCcCccCccccccccHHHHHHHHHHHHHhcCCCCHHHhhhhccCChhhceEEEECCC
Confidence 489999999999999999999987422110 1344577788888762 22 88
Q ss_pred ccchhccccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHcCC------CCCCC--------------------------
Q 023800 51 MPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGL------LKGLK-------------------------- 98 (277)
Q Consensus 51 ~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGl------l~g~~-------------------------- 98 (277)
++++..+++++.+.+++++|+++||+|+||||||+ +|..+++ ++||+
T Consensus 106 ~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~-~L~~a~l~~g~~ll~Gk~vT~f~~~eE~~~~~~~~~~~~~~pf~ 184 (232)
T cd03148 106 HGALIGIPESQDVAAALQWAIKNDRFVITLCHGPA-AFLAARHGGGKNPLEGYSVCVFPDSLDEGANIEIGYMPGHLTWL 184 (232)
T ss_pred CCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHH-HHHhccCCCCCeeeCCcEEecCCCHHHHhhhhccccccCccccc
Confidence 87788999999999999999999999999999999 8999998 88886
Q ss_pred -----------------------CCCeEcCCCCCCHHHHHHHHHHHh
Q 023800 99 -----------------------DGKVVTTRGPGTPMEFVVALVEQL 122 (277)
Q Consensus 99 -----------------------dg~~iT~~g~~~~~~~a~~li~~l 122 (277)
|||+||+++|.|+..++..+++.+
T Consensus 185 le~~L~~~Ga~~~~~~~~~~vv~Dg~LiTGqnP~Sa~~~a~~~~~~~ 231 (232)
T cd03148 185 VGEELKKMGMNIINDDITGRVHKDRKLLTGDSPLASNALGKLAAQEM 231 (232)
T ss_pred HHHHHHHcCCEEECCCCCcCEEEeCCEEeCCCcHhHHHHHHHHHHHh
Confidence 999999999999999999999876
No 31
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=99.81 E-value=1.8e-19 Score=145.42 Aligned_cols=106 Identities=29% Similarity=0.450 Sum_probs=95.0
Q ss_pred EecCCCchhhHHHHHHHHHhCC-------CeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh
Q 023800 166 PIANGSEEMEAVIIIDILRRAK-------ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF 238 (277)
Q Consensus 166 ll~~g~~~~e~~~~~~~l~~a~-------~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~ 238 (277)
+++|||+.+|++.++|+|+.+| ++++++|.+++ +|.++.|+.+.++..+++. .++|+|+||||.. ....
T Consensus 1 Ll~~gf~~~~~~~~~d~l~~a~~~~~~~~~~~~~vs~~~~-~v~~s~g~~i~~~~~~~~~--~~~D~lvvpg~~~-~~~~ 76 (166)
T PF13278_consen 1 LLFPGFSLLELAGPLDVLRAANRLSGEPLFEVRLVSPTGG-PVTSSSGLRIQPDGSLDDA--PDFDILVVPGGPG-FDAA 76 (166)
T ss_dssp EE-TTB-HHHHHHHHHHHTTCTHHCTTTTEEEEEEESSSC-EEEBTTSEEEEESEETCCC--SCCSEEEEE-STT-HHHH
T ss_pred CCCCCCcHHHHHHHHHHHHhchhhcCCCCeEEEEEecCCC-eeeecCCeEEEeccChhhc--ccCCEEEeCCCCC-chhc
Confidence 5799999999999999999998 89999999998 9999999999999999983 6899999999974 4556
Q ss_pred hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800 239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276 (277)
Q Consensus 239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~ 276 (277)
..++.+.+||++++++++.|+++|+|++ +||++|||+
T Consensus 77 ~~~~~l~~~l~~~~~~~~~i~aic~G~~-~La~aGlL~ 113 (166)
T PF13278_consen 77 AKDPALLDWLRQQHAQGTYIAAICTGAL-LLAEAGLLD 113 (166)
T ss_dssp TT-HHHHHHHHHHHCCTSEEEEETTHHH-HHHHTTTTT
T ss_pred ccCHHHHHHhhhhhccceEEeeeehHHH-HHhhhhccC
Confidence 7889999999999999999999999999 999999997
No 32
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=99.81 E-value=1.9e-19 Score=148.24 Aligned_cols=116 Identities=33% Similarity=0.532 Sum_probs=101.7
Q ss_pred CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCC-ceEEcccC-cEEEeCcchhhhccCCccEEEEcCCcchHHh
Q 023800 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADK-LEILASCQ-VKLVADMLIDEAAKLSYDLIVLPGGLGGAQA 237 (277)
Q Consensus 160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~-~~v~~~~g-~~i~~~~~~~~~~~~~~D~livpGG~~~~~~ 237 (277)
++|++|++++||+..|+..|+++|+++|++++++++.++ ..+.+..| ..+.++..++++++++||+|++|||..++..
T Consensus 2 ~~~i~i~~~~g~e~~E~~~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~ 81 (188)
T COG0693 2 MKKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEY 81 (188)
T ss_pred CceeEEEecCcceehhHhHHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhh
Confidence 478999999999999999999999999999999999874 25555555 6777778888887779999999999435666
Q ss_pred hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCC-CCC
Q 023800 238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHG-LLK 276 (277)
Q Consensus 238 ~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aG-lL~ 276 (277)
+..++.+.+|++++++++|+|++||||++ +|+++| +|+
T Consensus 82 ~~~~~~~~~~v~~~~~~~k~vaaIC~g~~-~L~~ag~ll~ 120 (188)
T COG0693 82 LRPDPDLLAFVRDFYANGKPVAAICHGPA-VLAAAGLLLK 120 (188)
T ss_pred ccCcHHHHHHHHHHHHcCCEEEEEChhHH-HHhccccccC
Confidence 77779999999999999999999999999 999999 775
No 33
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=99.81 E-value=6.4e-20 Score=154.58 Aligned_cols=121 Identities=25% Similarity=0.324 Sum_probs=102.2
Q ss_pred CchhhHHHHHHhCCCeEEEEeeCCCc-eee------------------cCCCCEEecCccccccccC--------CCccc
Q 023800 1 MEAVITIDVLRRSGADVVVASVEKQL-RVD------------------ACHGVKIVADALVSNCRDA--------CGMPG 53 (277)
Q Consensus 1 ~E~~~~~~~l~~~~~~v~~~s~~~~~-~v~------------------~~~g~~v~~d~~~~~~~~~--------gG~~~ 53 (277)
.|++.|+++|+++|++|+++|++++. .+. ...|..+.++..+++++.. ||...
T Consensus 23 ~E~~~p~~~l~~aG~~V~~as~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dal~ipGG~~~ 102 (221)
T cd03141 23 EELAHPYDVFTEAGYEVDFASPKGGKVPLDPRSLDAEDDDDASVFDNDEEFKKKLANTKKLSDVDPSDYDAIFIPGGHGP 102 (221)
T ss_pred HHHHHHHHHHHHCCCeEEEECCCCCCCCcCchhccccccCHHHHhhcCHHHHHHHHccCChhHCCHhHceEEEECCCccc
Confidence 48999999999999999999998742 121 1234457888888887632 77544
Q ss_pred hhccccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHcC------CCCCCC-----------------------------
Q 023800 54 ATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWG------LLKGLK----------------------------- 98 (277)
Q Consensus 54 ~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aG------ll~g~~----------------------------- 98 (277)
.+.++.++.+++||+++++++++|++||+|++ +|+++| +|+||+
T Consensus 103 ~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~-~La~ag~~~~~~ll~gr~~T~~~~~~~~~~~~~~~~~~~~~~~l~~~ 181 (221)
T cd03141 103 MFDLPDNPDLQDLLREFYENGKVVAAVCHGPA-ALLNVKLSDGKSLVAGKTVTGFTNEEEEAAGLKKVVPFLLEDELKEL 181 (221)
T ss_pred ccccccCHHHHHHHHHHHHcCCEEEEEcchHH-HHHhccCcCCCeeeCCcEEeccCCHHHHhcCccCcCCcCHHHHHHHc
Confidence 55678999999999999999999999999999 999999 799986
Q ss_pred ----------------CCCeEcCCCCCCHHHHHHHHHHHh
Q 023800 99 ----------------DGKVVTTRGPGTPMEFVVALVEQL 122 (277)
Q Consensus 99 ----------------dg~~iT~~g~~~~~~~a~~li~~l 122 (277)
|+|+||++||.++.+|++++++.|
T Consensus 182 g~~~~~~~~~~~~vv~D~~lvT~~~p~s~~~~a~~~i~~l 221 (221)
T cd03141 182 GANYVKAEPWAEFVVVDGRLITGQNPASAAAVAEALVKAL 221 (221)
T ss_pred CCEeecCCCCCCCEEEeCCEeeCCCchhHHHHHHHHHHhC
Confidence 889999999999999999999875
No 34
>PRK04155 chaperone protein HchA; Provisional
Probab=99.81 E-value=1e-19 Score=157.86 Aligned_cols=122 Identities=21% Similarity=0.239 Sum_probs=99.5
Q ss_pred CchhhHHHHHHhCCCeEEEEeeCCCceeec-----------------CCCCEEecCcccccc----c----cC------C
Q 023800 1 MEAVITIDVLRRSGADVVVASVEKQLRVDA-----------------CHGVKIVADALVSNC----R----DA------C 49 (277)
Q Consensus 1 ~E~~~~~~~l~~~~~~v~~~s~~~~~~v~~-----------------~~g~~v~~d~~~~~~----~----~~------g 49 (277)
+|++.|+++|+++||+|+++|++++ ++.. ..+..+..+..++++ . ++ |
T Consensus 77 ~E~~~P~~~L~~AG~eVdiAS~~G~-~~~~d~~s~~~~d~~v~~~~~~~~~~l~~~~~l~~v~~~~~~~~~dYDaV~iPG 155 (287)
T PRK04155 77 VETLLPMYHLHKAGFEFDVATLSGN-PVKFEYWAMPHEDEAVMGFYEKYKSKFKQPKKLADVVANLLAPDSDYAAVFIPG 155 (287)
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCC-ccccccccccccchhHHHHHHHhhhhccCceeHHHhhhhhcCCcccccEEEECC
Confidence 4999999999999999999999873 3321 112223333333322 1 22 8
Q ss_pred CccchhccccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHcC------CCCCCC-------------------------
Q 023800 50 GMPGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWG------LLKGLK------------------------- 98 (277)
Q Consensus 50 G~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aG------ll~g~~------------------------- 98 (277)
|++++..+++++.++++|+++++++|+|+||||||+ +|..+| +++||+
T Consensus 156 G~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa-~Ll~a~~~~g~~ll~GkkvT~fp~~~e~~~~~~~~~~~~~~~~ 234 (287)
T PRK04155 156 GHGALIGLPESEDVAAALQWALDNDRFIITLCHGPA-ALLAAGVDHGDNPLNGYSICAFPDALDKQTPEIGYMPGHLTWL 234 (287)
T ss_pred CCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHH-HHHHcCCcCCCcccCCCEEeeCCCHHHhhccccccccccccch
Confidence 877788899999999999999999999999999999 899999 999988
Q ss_pred -----------------------CCCeEcCCCCCCHHHHHHHHHHHhcC
Q 023800 99 -----------------------DGKVVTTRGPGTPMEFVVALVEQLYG 124 (277)
Q Consensus 99 -----------------------dg~~iT~~g~~~~~~~a~~li~~l~g 124 (277)
|||+||++||.++.+|++.+++.|..
T Consensus 235 ~e~~L~~~Ga~~~~~~~~~~VvvDg~LITGq~P~sa~~fa~~~~~~Ll~ 283 (287)
T PRK04155 235 FGEELKKMGVNIVNDDITGRVHKDRKLLTGDSPLASNALGKLAAQELLA 283 (287)
T ss_pred HHHHHHHcCCEEEcCCCCCCEEEeCCEEeCCChhHHHHHHHHHHHHHHH
Confidence 88999999999999999999999863
No 35
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=99.81 E-value=2.4e-19 Score=159.70 Aligned_cols=112 Identities=22% Similarity=0.282 Sum_probs=100.5
Q ss_pred CCCeEEEEecCCCchhhHHHHHHHHHhCC-------CeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCC
Q 023800 159 NSPQILVPIANGSEEMEAVIIIDILRRAK-------ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGG 231 (277)
Q Consensus 159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~-------~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG 231 (277)
++++|+|+++|||+.+|+.+++|+|+.++ |+|+++|.+++ +|+++.|+.+.+|..+++. ++||+|+||||
T Consensus 8 ~~~~v~ill~~gf~~~~~~~~~dvl~~a~~~~~~~~~~v~~vs~~~~-~v~ss~g~~i~~d~~~~~~--~~~D~livpGg 84 (322)
T PRK09393 8 HNHLVVALAYDGLCTFEFGCAVEIFGLPRPELGVDWYRFAVAAVEPG-PLRAAGGITVVADGGLELL--DRADTIVIPGW 84 (322)
T ss_pred cccEEEEEEcCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEECCCC-ceEeCCCcEEeCCCCcccc--CCCCEEEECCC
Confidence 34799999999999999999999997664 58999999998 9999999999999999864 57999999998
Q ss_pred cchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800 232 LGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276 (277)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~ 276 (277)
.. .. ...++.+.+||+++++++++|++||+|++ +||++|||+
T Consensus 85 ~~-~~-~~~~~~l~~~l~~~~~~~~~i~aic~g~~-~La~aGlL~ 126 (322)
T PRK09393 85 RG-PD-APVPEPLLEALRAAHARGARLCSICSGVF-VLAAAGLLD 126 (322)
T ss_pred Cc-cc-ccCCHHHHHHHHHHHHcCCEEEEEcHHHH-HHHhccCCC
Confidence 53 33 34588999999999999999999999999 999999997
No 36
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=99.80 E-value=4.8e-19 Score=148.06 Aligned_cols=111 Identities=27% Similarity=0.416 Sum_probs=92.8
Q ss_pred CeEEEEec-----CCCchhhHHHHHHHHHhCCCeEEEEeeCCCc----------eEEcccCcEEEeC-------cchhhh
Q 023800 161 PQILVPIA-----NGSEEMEAVIIIDILRRAKANVVVASVADKL----------EILASCQVKLVAD-------MLIDEA 218 (277)
Q Consensus 161 ~kV~ill~-----~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~----------~v~~~~g~~i~~~-------~~~~~~ 218 (277)
+||+|++. +|+++.|+..|++.|+++|++++++|++++. ++....++.+.++ ..++++
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v 81 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAEA 81 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhHC
Confidence 68999998 9999999999999999999999999998751 2233445555544 578888
Q ss_pred ccCCccEEEEcCCcchHHh----------hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 219 AKLSYDLIVLPGGLGGAQA----------FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 219 ~~~~~D~livpGG~~~~~~----------~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
++++||+|++|||+..... ++.++.+.+++++++++||+|++||||++ +|+.+
T Consensus 82 ~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~-iL~~~ 144 (217)
T PRK11780 82 DAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPA-MLPKI 144 (217)
T ss_pred ChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHH-HHHHH
Confidence 8889999999999754432 35589999999999999999999999999 89885
No 37
>PRK11249 katE hydroperoxidase II; Provisional
Probab=99.77 E-value=5.7e-18 Score=161.78 Aligned_cols=116 Identities=14% Similarity=0.206 Sum_probs=108.5
Q ss_pred CCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh
Q 023800 159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF 238 (277)
Q Consensus 159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~ 238 (277)
+.+||+||++||++..++..+.++|+.+|.++.++|++++ +|+++.|..+.+|.++++.+...||+|+||||......+
T Consensus 596 ~gRKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G-~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~L 674 (752)
T PRK11249 596 KGRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMG-EVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIADL 674 (752)
T ss_pred cccEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCC-eEECCCCCEEecceeeccCCccCCCEEEECCCchhHHHH
Confidence 5689999999999999999999999999999999999998 999999999999999998876689999999996556778
Q ss_pred hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800 239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276 (277)
Q Consensus 239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~ 276 (277)
..++.+++||+++++++|+|+++|+|++ +|+++||.+
T Consensus 675 ~~d~~al~fL~eaykHgK~IAAiCaG~~-LLaaAGL~~ 711 (752)
T PRK11249 675 ADNGDARYYLLEAYKHLKPIALAGDARK-LKAALKLPD 711 (752)
T ss_pred hhCHHHHHHHHHHHHcCCEEEEeCccHH-HHHhcCCCC
Confidence 8899999999999999999999999999 999999943
No 38
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=99.76 E-value=1.6e-18 Score=146.46 Aligned_cols=107 Identities=22% Similarity=0.276 Sum_probs=92.9
Q ss_pred CCCchhhHHHHHHHHHhCCCeEEEEeeCCCceE---------------------EcccCcEEEeCcchhhhccCCccEEE
Q 023800 169 NGSEEMEAVIIIDILRRAKANVVVASVADKLEI---------------------LASCQVKLVADMLIDEAAKLSYDLIV 227 (277)
Q Consensus 169 ~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v---------------------~~~~g~~i~~~~~~~~~~~~~~D~li 227 (277)
.|++..|+..|+++|+++|++|+++|++++.++ .+..+..+.++..+++++.++||+|+
T Consensus 20 tG~~~~E~~~p~~~l~~aG~~VdiaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYDav~ 99 (231)
T cd03147 20 TGVFFSEALHPFNVFREAGFEVDFVSETGTFGFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYGIFF 99 (231)
T ss_pred cccCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCcEEE
Confidence 689999999999999999999999999875111 12345567788889998889999999
Q ss_pred EcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC-------CCCC
Q 023800 228 LPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH-------GLLK 276 (277)
Q Consensus 228 vpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a-------GlL~ 276 (277)
||||+.+...+..++.+.++++++++++|+|++||||+. +|+.+ +|++
T Consensus 100 iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~-~L~~a~~~~~g~~ll~ 154 (231)
T cd03147 100 VAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPA-ILANLKDPKTGKPLIK 154 (231)
T ss_pred ECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHH-HHHhhhcccCCCcccC
Confidence 999987677799999999999999999999999999999 89987 7764
No 39
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=99.75 E-value=1.2e-17 Score=137.54 Aligned_cols=125 Identities=35% Similarity=0.497 Sum_probs=108.9
Q ss_pred CchhhHHHHHHhCCCeEEEEeeCCC-ceeecCCC-CEEecCccccccc--cC------CCccchhccccChHHHHHHHHH
Q 023800 1 MEAVITIDVLRRSGADVVVASVEKQ-LRVDACHG-VKIVADALVSNCR--DA------CGMPGATNLKESEVLESIVKKQ 70 (277)
Q Consensus 1 ~E~~~~~~~l~~~~~~v~~~s~~~~-~~v~~~~g-~~v~~d~~~~~~~--~~------gG~~~~~~~~~~~~~~~~l~~~ 70 (277)
+|++.|+++|+++|++++++++.++ ..+.+..| ..+.++..+++++ ++ ||..++..++.++.+++|+|+|
T Consensus 16 ~E~~~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~~~~~~~~~~~v~~~ 95 (188)
T COG0693 16 LELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEYLRPDPDLLAFVRDF 95 (188)
T ss_pred hhHhHHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhhccCcHHHHHHHHHH
Confidence 5899999999999999999999873 35666655 6777778888876 32 8845677777779999999999
Q ss_pred HhCCCEEEEEchhHHHHHHHcC-CCCCCC----------------------------------CCC-eEcCCCCCCHHHH
Q 023800 71 ASDGRLYAAICVFLAVALGSWG-LLKGLK----------------------------------DGK-VVTTRGPGTPMEF 114 (277)
Q Consensus 71 ~~~g~~i~aiC~g~~~~La~aG-ll~g~~----------------------------------dg~-~iT~~g~~~~~~~ 114 (277)
+++||+|++|||||+ +|+.+| +++||+ ||| ++|+++|.++.+|
T Consensus 96 ~~~~k~vaaIC~g~~-~L~~ag~ll~g~~~t~~~~~~~~~~~~~~~~ga~~vd~~~~~~~vv~dg~~lvt~~~p~~~~~~ 174 (188)
T COG0693 96 YANGKPVAAICHGPA-VLAAAGLLLKGRKATAFPDIEEDVKNGDGKAGANYVDAPLWTDEVVVDGNALVTGRNPASAPAF 174 (188)
T ss_pred HHcCCEEEEEChhHH-HHhccccccCCceEeecCchHHHHHhHHHhcCceEeccccCcCCEEEECCeEEEcCCcccHHHH
Confidence 999999999999999 999999 999999 777 9999999999999
Q ss_pred HHHHHHHhcChh
Q 023800 115 VVALVEQLYGKG 126 (277)
Q Consensus 115 a~~li~~l~g~~ 126 (277)
+..+++.+.+..
T Consensus 175 ~~~~~~~l~~~~ 186 (188)
T COG0693 175 ALELLKALGGAE 186 (188)
T ss_pred HHHHHHHHhccc
Confidence 999999998764
No 40
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=99.74 E-value=6.6e-18 Score=142.82 Aligned_cols=107 Identities=18% Similarity=0.274 Sum_probs=92.9
Q ss_pred EecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEc-----------------ccCcEEEeCcchhhh------ccCC
Q 023800 166 PIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILA-----------------SCQVKLVADMLIDEA------AKLS 222 (277)
Q Consensus 166 ll~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~-----------------~~g~~i~~~~~~~~~------~~~~ 222 (277)
.+.+|+++.|+..|+++|+++|++|+++|++++ .+.. ..+..+..+..++++ ++++
T Consensus 18 ~~~tG~~~~El~~p~~~l~~aG~~V~~aS~~g~-~~~~d~~s~~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~~~~~~~d 96 (232)
T cd03148 18 LFSTGNHPVEMLLPLYHLHAAGFDFDVATLSGL-PVKFEYWAMPHEDEAVMPFFEKHKSKLRNPKKLADVVASLNADDSE 96 (232)
T ss_pred CcCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCC-cCccCccccccccHHHHHHHHHHHHHhcCCCCHHHhhhhccCChhh
Confidence 346899999999999999999999999999886 3221 234457778888887 4578
Q ss_pred ccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCC
Q 023800 223 YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGL 274 (277)
Q Consensus 223 ~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGl 274 (277)
||+|++|||+..+..++.++.+.+++++++++||+|++||||++ +|..+++
T Consensus 97 YDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~-~L~~a~l 147 (232)
T cd03148 97 YAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPA-AFLAARH 147 (232)
T ss_pred ceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHH-HHHhccC
Confidence 99999999987788899999999999999999999999999999 8998988
No 41
>PRK04155 chaperone protein HchA; Provisional
Probab=99.74 E-value=1.9e-17 Score=143.67 Aligned_cols=112 Identities=21% Similarity=0.347 Sum_probs=91.9
Q ss_pred CCeEEEEec--------------CCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcc-----------------cCcE
Q 023800 160 SPQILVPIA--------------NGSEEMEAVIIIDILRRAKANVVVASVADKLEILAS-----------------CQVK 208 (277)
Q Consensus 160 ~~kV~ill~--------------~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~-----------------~g~~ 208 (277)
.+||+|++. .|+++.|+..|+++|+++|++|+++|++|+ ++... .+..
T Consensus 49 ~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G~-~~~~d~~s~~~~d~~v~~~~~~~~~~ 127 (287)
T PRK04155 49 GKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSGN-PVKFEYWAMPHEDEAVMGFYEKYKSK 127 (287)
T ss_pred CCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCCC-ccccccccccccchhHHHHHHHhhhh
Confidence 468999886 588999999999999999999999999886 43211 1222
Q ss_pred EEeCcchhhh----c--cCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCC
Q 023800 209 LVADMLIDEA----A--KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHG 273 (277)
Q Consensus 209 i~~~~~~~~~----~--~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aG 273 (277)
+..+..++++ . +++||+|+||||+.....++.++.+.++|+++++++|+|++||||++ +|+.+|
T Consensus 128 l~~~~~l~~v~~~~~~~~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa-~Ll~a~ 197 (287)
T PRK04155 128 FKQPKKLADVVANLLAPDSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPA-ALLAAG 197 (287)
T ss_pred ccCceeHHHhhhhhcCCcccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHH-HHHHcC
Confidence 3333334433 3 57999999999987778899999999999999999999999999999 899998
No 42
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=99.74 E-value=4.6e-18 Score=143.32 Aligned_cols=104 Identities=23% Similarity=0.303 Sum_probs=90.9
Q ss_pred cCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEc--------------------ccCcEEEeCcchhhhccCCccEEE
Q 023800 168 ANGSEEMEAVIIIDILRRAKANVVVASVADKLEILA--------------------SCQVKLVADMLIDEAAKLSYDLIV 227 (277)
Q Consensus 168 ~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~--------------------~~g~~i~~~~~~~~~~~~~~D~li 227 (277)
-+|+++.|+..|+++|+++|++|+++|++++ ++.. ..|..+.++..++++++++||+|+
T Consensus 17 ~~G~~~~E~~~p~~~l~~aG~~V~~as~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dal~ 95 (221)
T cd03141 17 PTGLWLEELAHPYDVFTEAGYEVDFASPKGG-KVPLDPRSLDAEDDDDASVFDNDEEFKKKLANTKKLSDVDPSDYDAIF 95 (221)
T ss_pred cCccCHHHHHHHHHHHHHCCCeEEEECCCCC-CCCcCchhccccccCHHHHhhcCHHHHHHHHccCChhHCCHhHceEEE
Confidence 3799999999999999999999999999886 3211 234567888999999888999999
Q ss_pred EcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCC
Q 023800 228 LPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHG 273 (277)
Q Consensus 228 vpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aG 273 (277)
||||......+..++.+.+||+++++++|+|++||+|++ +|+++|
T Consensus 96 ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~-~La~ag 140 (221)
T cd03141 96 IPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPA-ALLNVK 140 (221)
T ss_pred ECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHH-HHHhcc
Confidence 999975445577899999999999999999999999999 999999
No 43
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=99.73 E-value=2.3e-17 Score=137.14 Aligned_cols=105 Identities=25% Similarity=0.372 Sum_probs=87.3
Q ss_pred cCCCchhhHHHHHHHHHhCCCeEEEEeeCCCc----------eEEcccCcEEEeC-------cchhhhccCCccEEEEcC
Q 023800 168 ANGSEEMEAVIIIDILRRAKANVVVASVADKL----------EILASCQVKLVAD-------MLIDEAAKLSYDLIVLPG 230 (277)
Q Consensus 168 ~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~----------~v~~~~g~~i~~~-------~~~~~~~~~~~D~livpG 230 (277)
+|||++.|+..|+++|+++|++++++|++++. .+....++.+.++ ..++++++++||+|++||
T Consensus 11 ~dg~E~~El~~p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPG 90 (213)
T cd03133 11 YDGSEIHEAVLTLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPG 90 (213)
T ss_pred CCCccHHHHHHHHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECC
Confidence 48999999999999999999999999997641 2333456666665 678888888999999999
Q ss_pred CcchHHhh----------hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCC
Q 023800 231 GLGGAQAF----------AKSKKLVNMLKKQKESNRPYGAICASPALVLEPHG 273 (277)
Q Consensus 231 G~~~~~~~----------~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aG 273 (277)
|+...+.+ +.++.+.++++++++++|+|++||+|++ +|++++
T Consensus 91 G~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~-~L~~~~ 142 (213)
T cd03133 91 GFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPA-LAAKIL 142 (213)
T ss_pred CCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHH-HHHHHh
Confidence 97544333 2478999999999999999999999999 899854
No 44
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=99.70 E-value=7.1e-17 Score=141.28 Aligned_cols=114 Identities=19% Similarity=0.282 Sum_probs=101.5
Q ss_pred CCCeEEEEecCCCchhhHHHHHHHHHhCC-------CeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCC
Q 023800 159 NSPQILVPIANGSEEMEAVIIIDILRRAK-------ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGG 231 (277)
Q Consensus 159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~-------~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG 231 (277)
++.+|+|+++|+|..+.+..++|.|+.|| |.|.+++.+++ +|.+++|+.|.+|..+++.. .+|++++++|
T Consensus 9 ~~~~~~~ll~p~f~l~~fa~~ve~lr~An~~~~~~~~~w~~~s~~g~-~V~ss~G~~i~~d~~~~~~~--~~~~v~v~~g 85 (328)
T COG4977 9 SPQRFGFLLLPNFSLMAFASAVEPLRAANRLAGRSLYVWSIVSADGG-PVRSSSGLSIAPDGGLEAAP--PIDILPVCGG 85 (328)
T ss_pred CceEEEEEEeCCCchhhhhhhHHHHHHhhhhccccccceEEeecCCC-CcccCCCceEecCCcccccC--cceEEEEecC
Confidence 45689999999999999999999999987 46899999998 99999999999999999864 4999999887
Q ss_pred cchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCCC
Q 023800 232 LGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKV 277 (277)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~~ 277 (277)
.. +......+++..||++.+++|..|++||+|+| +||++||||.
T Consensus 86 ~~-~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf-~LA~aGLLdG 129 (328)
T COG4977 86 LG-PERPVNAPALLAWLRRAARRGARLGGLCTGAF-VLAEAGLLDG 129 (328)
T ss_pred CC-cccccchHHHHHHHHHHHhcCCeEEEehHhHH-HHHHhcccCC
Confidence 53 44344448999999999999999999999999 9999999983
No 45
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=99.68 E-value=4.7e-16 Score=122.21 Aligned_cols=116 Identities=21% Similarity=0.153 Sum_probs=96.7
Q ss_pred chhhHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCcccccccc---C-----CCccchhccccChHHHHHHHHHHhC
Q 023800 2 EAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRD---A-----CGMPGATNLKESEVLESIVKKQASD 73 (277)
Q Consensus 2 E~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~---~-----gG~~~~~~~~~~~~~~~~l~~~~~~ 73 (277)
|+..|+++|+.++++++++|+++ .++++++|+.+.++..+++... + ||......+..++.+++||++++++
T Consensus 16 e~~~~~~~~~~a~~~v~vvs~~~-~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~~~~~l~~~l~~~~~~ 94 (142)
T cd03132 16 ELSALKAALKAAGANVKVVAPTL-GGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALAPSGRALHFVTEAFKH 94 (142)
T ss_pred HHHHHHHHHHHCCCEEEEEecCc-CceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHccChHHHHHHHHHHhc
Confidence 78899999999999999999997 6899999999999999987642 2 7643344457789999999999999
Q ss_pred CCEEEEEchhHHHHHHHcCCCCCCCCCCeEcCCCCCCHHHHHHHHHHHhc
Q 023800 74 GRLYAAICVFLAVALGSWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLY 123 (277)
Q Consensus 74 g~~i~aiC~g~~~~La~aGll~g~~dg~~iT~~g~~~~~~~a~~li~~l~ 123 (277)
+++|++||+|++ +|+++|+|-. |-+++|++++... |.-.+++.+.
T Consensus 95 ~~~I~aic~G~~-~La~aGll~~--~~gv~~~~~~~~~--~~~~~~~~~~ 139 (142)
T cd03132 95 GKPIGAVGEGSD-LLEAAGIPLE--DPGVVTADDVKDV--FTDRFIDALA 139 (142)
T ss_pred CCeEEEcCchHH-HHHHcCCCCC--CCcEEEecCcchH--HHHHHHHHHH
Confidence 999999999999 9999999632 4689999966643 5666776653
No 46
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=99.68 E-value=1.1e-16 Score=130.54 Aligned_cols=116 Identities=38% Similarity=0.624 Sum_probs=104.3
Q ss_pred CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhh
Q 023800 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA 239 (277)
Q Consensus 160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~ 239 (277)
++++.|+..+|.+.+|+..|+++|++.|.+|++++++++.+++++.|..+.+|..+.|.-.+.||+++||||..+...+.
T Consensus 5 ~~~vlil~~~g~Ee~E~ivp~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e~L~ 84 (247)
T KOG2764|consen 5 KKAVLILCADGMEEYEFIVPIDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAETLS 84 (247)
T ss_pred cccEEEEccCCcceeEEEEeHHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchhhhhhh
Confidence 36788898999999999999999999999999999998889999999999999888776668999999999976788899
Q ss_pred cCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCC
Q 023800 240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLL 275 (277)
Q Consensus 240 ~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL 275 (277)
+.+.+.+.+|+|.+.|++|++||+|+.++|+.-|++
T Consensus 85 ~~~~v~~lvK~q~~~gkLIaaICaap~~al~a~gl~ 120 (247)
T KOG2764|consen 85 ECEKVVDLVKEQAESGKLIAAICAAPLTALAAHGLL 120 (247)
T ss_pred hcHHHHHHHHHHHhcCCeEEEeecchHHHHhhcccc
Confidence 999999999999999999999999995256666554
No 47
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=99.67 E-value=2.5e-16 Score=124.50 Aligned_cols=87 Identities=41% Similarity=0.666 Sum_probs=78.5
Q ss_pred eEEEEeeCCCceEEcccC---cEEEeCcchhhhccCCccEEEEcCCcchHHhhhcC-HHHHHHHHHHHHcCCcEEEEchh
Q 023800 189 NVVVASVADKLEILASCQ---VKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKS-KKLVNMLKKQKESNRPYGAICAS 264 (277)
Q Consensus 189 ~v~~vs~~~~~~v~~~~g---~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~-~~~~~~l~~~~~~~~~i~aiC~G 264 (277)
+|+++|+..++.++++.| ..+.++..++++++++||+|++|||..+.+.++.+ +.+.++++++++++|+|++||+|
T Consensus 1 ~V~~vs~~~~~~v~~~~g~~~~~v~~d~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g 80 (147)
T PF01965_consen 1 KVDVVSPGDGKEVTGSHGSFGIKVTPDKTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHG 80 (147)
T ss_dssp EEEEEESSSSSEEEBTTSHHHHEEESSEEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTC
T ss_pred CEEEEECCCCCeEEcCCCcCCEEEECCCcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCC
Confidence 588999987768999999 99999999999999999999999998667878855 99999999999999999999999
Q ss_pred hHHhhhhCCCCC
Q 023800 265 PALVLEPHGLLK 276 (277)
Q Consensus 265 ~~~lLa~aGlL~ 276 (277)
+. +|+++|+|+
T Consensus 81 ~~-~L~~~gll~ 91 (147)
T PF01965_consen 81 PA-VLAAAGLLK 91 (147)
T ss_dssp HH-HHHHTTTTT
T ss_pred cc-hhhccCccC
Confidence 99 999999996
No 48
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=99.64 E-value=8e-16 Score=127.94 Aligned_cols=96 Identities=23% Similarity=0.282 Sum_probs=75.1
Q ss_pred CchhhHHHHHHhCCCeEEEEeeCCCc----------eeecCCCCEEecC-------cccccccc--C------CCccchh
Q 023800 1 MEAVITIDVLRRSGADVVVASVEKQL----------RVDACHGVKIVAD-------ALVSNCRD--A------CGMPGAT 55 (277)
Q Consensus 1 ~E~~~~~~~l~~~~~~v~~~s~~~~~----------~v~~~~g~~v~~d-------~~~~~~~~--~------gG~~~~~ 55 (277)
.|+++|+++|+++|++|+++|++++. .+....++.+.++ ..+++++. + ||+.++.
T Consensus 17 ~El~~p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPGG~~~~~ 96 (213)
T cd03133 17 HEAVLTLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPGGFGAAK 96 (213)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECCCCchhh
Confidence 48999999999999999999997531 3444566666665 66776542 2 8865443
Q ss_pred cc----------ccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHcCCCCCCC
Q 023800 56 NL----------KESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK 98 (277)
Q Consensus 56 ~~----------~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~ 98 (277)
++ +.++.+++++++|+++||+|+|||+||+ +|++++. +||+
T Consensus 97 ~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~-~L~~~~~-kGr~ 147 (213)
T cd03133 97 NLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPA-LAAKILG-EGVE 147 (213)
T ss_pred hhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHH-HHHHHhc-cCCe
Confidence 33 3589999999999999999999999999 9999766 7775
No 49
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=99.60 E-value=3.6e-15 Score=124.75 Aligned_cols=96 Identities=21% Similarity=0.248 Sum_probs=72.8
Q ss_pred CchhhHHHHHHhCCCeEEEEeeCCCc----------eeecCCCCEEecC-------cccccccc--C------CCccchh
Q 023800 1 MEAVITIDVLRRSGADVVVASVEKQL----------RVDACHGVKIVAD-------ALVSNCRD--A------CGMPGAT 55 (277)
Q Consensus 1 ~E~~~~~~~l~~~~~~v~~~s~~~~~----------~v~~~~g~~v~~d-------~~~~~~~~--~------gG~~~~~ 55 (277)
.|+++|+++|+++|++|+++|++++. ++....++.+.++ ..+++++. + ||+.++.
T Consensus 20 ~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~dyDalviPGG~g~~~ 99 (217)
T PRK11780 20 HEAVLTLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAEADAEDFDALIVPGGFGAAK 99 (217)
T ss_pred hHHHHHHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhHCChhhCCEEEECCCCchhh
Confidence 49999999999999999999997632 2333445555544 56666543 2 8865443
Q ss_pred ----------ccccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHcCCCCCCC
Q 023800 56 ----------NLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK 98 (277)
Q Consensus 56 ----------~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~ 98 (277)
.++.++.+++++++|+++||+|+||||||+ +|+.+.. +||+
T Consensus 100 ~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~-iL~~~~~-~gr~ 150 (217)
T PRK11780 100 NLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPA-MLPKILG-AGVK 150 (217)
T ss_pred hhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHH-HHHHHhc-cCcE
Confidence 235699999999999999999999999999 8988732 7775
No 50
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.29 E-value=3e-11 Score=101.63 Aligned_cols=92 Identities=25% Similarity=0.340 Sum_probs=73.0
Q ss_pred CeEEEEecCCCc-hhhHHHHHHHHH-hCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHH--
Q 023800 161 PQILVPIANGSE-EMEAVIIIDILR-RAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ-- 236 (277)
Q Consensus 161 ~kV~ill~~g~~-~~e~~~~~~~l~-~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~-- 236 (277)
+||+|+.+||.+ +.|+ +++|+ .+|+++..++.+.. + .++||+|++|||....+
T Consensus 1 ~~v~Vl~~~G~n~~~d~---~~a~~~~~G~~~~~v~~~~~------------------~--l~~~D~lvipGG~~~~d~l 57 (219)
T PRK03619 1 MKVAVIVFPGSNCDRDM---ARALRDLLGAEPEYVWHKET------------------D--LDGVDAVVLPGGFSYGDYL 57 (219)
T ss_pred CEEEEEecCCcChHHHH---HHHHHhcCCCeEEEEecCcC------------------C--CCCCCEEEECCCCchhhhh
Confidence 489999999987 5555 77887 79999888865321 1 24689999999863222
Q ss_pred ---hhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800 237 ---AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276 (277)
Q Consensus 237 ---~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~ 276 (277)
....++.+.+||+++++++++|++||+|.+ +|+++|||+
T Consensus 58 ~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~q-lLa~~GLL~ 99 (219)
T PRK03619 58 RCGAIAAFSPIMKAVKEFAEKGKPVLGICNGFQ-ILTEAGLLP 99 (219)
T ss_pred ccchhhhchHHHHHHHHHHHCCCEEEEECHHHH-HHHHcCCCC
Confidence 123457899999999999999999999999 999999996
No 51
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.17 E-value=2.5e-10 Score=98.13 Aligned_cols=98 Identities=23% Similarity=0.329 Sum_probs=72.7
Q ss_pred CCeEEEEecCCCc-hhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh
Q 023800 160 SPQILVPIANGSE-EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF 238 (277)
Q Consensus 160 ~~kV~ill~~g~~-~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~ 238 (277)
++||+|+.+||++ +.|. .++|+++|+++.+++.... . +.. . ..++||+|++|||....+.+
T Consensus 3 ~~kvaVl~~pG~n~d~e~---~~Al~~aG~~v~~v~~~~~----------~--~~~-~--~l~~~DgLvipGGfs~gD~l 64 (261)
T PRK01175 3 SIRVAVLRMEGTNCEDET---VKAFRRLGVEPEYVHINDL----------A--AER-K--SVSDYDCLVIPGGFSAGDYI 64 (261)
T ss_pred CCEEEEEeCCCCCCHHHH---HHHHHHCCCcEEEEeeccc----------c--ccc-c--chhhCCEEEECCCCCccccc
Confidence 4799999999997 5544 6899999999999876431 0 100 1 13579999999996322322
Q ss_pred hcC--------HHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800 239 AKS--------KKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276 (277)
Q Consensus 239 ~~~--------~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~ 276 (277)
... +.+.+.|+++.+++++|.+||.|.+ +|+++|||-
T Consensus 65 ~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~Q-lLa~~GlLp 109 (261)
T PRK01175 65 RAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQ-VLVELGLLP 109 (261)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHH-HHHHCCCCC
Confidence 221 2345888999999999999999999 999999983
No 52
>PRK11249 katE hydroperoxidase II; Provisional
Probab=99.16 E-value=3.5e-10 Score=108.90 Aligned_cols=116 Identities=11% Similarity=0.071 Sum_probs=94.6
Q ss_pred chhhHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCcccccccc---C-----CCccchhccccChHHHHHHHHHHhC
Q 023800 2 EAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRD---A-----CGMPGATNLKESEVLESIVKKQASD 73 (277)
Q Consensus 2 E~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~---~-----gG~~~~~~~~~~~~~~~~l~~~~~~ 73 (277)
|+..+.++|+++|.++.++|+.+ .+|+++.|..|.+|.++++.+. + ||..+...+..++.++.||++++++
T Consensus 612 ev~~~~daL~~AGa~V~VVSp~~-G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~L~~d~~al~fL~eaykH 690 (752)
T PRK11249 612 DLLAILKALKAKGVHAKLLYPRM-GEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIADLADNGDARYYLLEAYKH 690 (752)
T ss_pred HHHHHHHHHHHCCCEEEEEECCC-CeEECCCCCEEecceeeccCCccCCCEEEECCCchhHHHHhhCHHHHHHHHHHHHc
Confidence 67899999999999999999987 5899999999999999987643 2 7754567788899999999999999
Q ss_pred CCEEEEEchhHHHHHHHcCCCCCCCCCCeEcCCCCCCHHHHHHHHHHHh
Q 023800 74 GRLYAAICVFLAVALGSWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQL 122 (277)
Q Consensus 74 g~~i~aiC~g~~~~La~aGll~g~~dg~~iT~~g~~~~~~~a~~li~~l 122 (277)
+|+|+++|+|++ +|+++||.+ ..|..++++.+.. -.++-.+++.+
T Consensus 691 gK~IAAiCaG~~-LLaaAGL~~-~~~~g~~~~~~~~--~~~~~~~~~~~ 735 (752)
T PRK11249 691 LKPIALAGDARK-LKAALKLPD-QGEEGLVEADSAD--GSFMDELLTAM 735 (752)
T ss_pred CCEEEEeCccHH-HHHhcCCCC-CCCCeEEecCCcc--HHHHHHHHHHH
Confidence 999999999999 999999965 1235688876322 33445555554
No 53
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.07 E-value=1.5e-09 Score=91.90 Aligned_cols=92 Identities=24% Similarity=0.349 Sum_probs=71.6
Q ss_pred CeEEEEecCCCc-hhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh--
Q 023800 161 PQILVPIANGSE-EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA-- 237 (277)
Q Consensus 161 ~kV~ill~~g~~-~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~-- 237 (277)
+||+|+.++|.+ +.|+. ++|+.+|+++.++..+.. .+ +++|+|++|||....+.
T Consensus 1 ~~v~Vl~~~G~n~~~~~~---~al~~~G~~~~~i~~~~~---------------~l-----~~~d~lilpGG~~~~d~~~ 57 (227)
T TIGR01737 1 MKVAVIRFPGTNCDRDTV---YALRLLGVDAEIVWYEDG---------------SL-----PDYDGVVLPGGFSYGDYLR 57 (227)
T ss_pred CeEEEEeCCCcCcHHHHH---HHHHHCCCeEEEEecCCC---------------CC-----CCCCEEEECCCCccccccc
Confidence 489999999875 55653 888889999888854321 11 35899999998632221
Q ss_pred ---hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800 238 ---FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276 (277)
Q Consensus 238 ---~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~ 276 (277)
+..+..+.++|+++.+++++|.+||.|.+ +|+++|+|+
T Consensus 58 ~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~Q-lLa~~GlL~ 98 (227)
T TIGR01737 58 AGAIAAASPIMQEVREFAEKGVPVLGICNGFQ-ILVEAGLLP 98 (227)
T ss_pred ccchhcchHHHHHHHHHHHcCCEEEEECHHHH-HHHHcCCCC
Confidence 23356788999999999999999999999 899999985
No 54
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=99.07 E-value=1.6e-09 Score=79.52 Aligned_cols=92 Identities=29% Similarity=0.474 Sum_probs=76.0
Q ss_pred EEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCH
Q 023800 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSK 242 (277)
Q Consensus 163 V~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~ 242 (277)
|++++.+++...++..+.+.|+.+++++.+++.... ...+ .....+||++++|||.........++
T Consensus 1 v~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~-------------~~~~~~~d~lii~g~~~~~~~~~~~~ 66 (115)
T cd01653 1 VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGG-PVES-------------DVDLDDYDGLILPGGPGTPDDLARDE 66 (115)
T ss_pred CEEEecCCCchhhhHHHHHHHHHCCCeEEEEcCCCC-ceec-------------cCChhccCEEEECCCCCchhhhccCH
Confidence 478889999999999999999999999999999886 4433 12245799999999864333333468
Q ss_pred HHHHHHHHHHHcCCcEEEEchhhHHhh
Q 023800 243 KLVNMLKKQKESNRPYGAICASPALVL 269 (277)
Q Consensus 243 ~~~~~l~~~~~~~~~i~aiC~G~~~lL 269 (277)
.+.+|++++.+++++++++|.|++ +|
T Consensus 67 ~~~~~i~~~~~~~~~i~~~c~g~~-~l 92 (115)
T cd01653 67 ALLALLREAAAAGKPILGICLGAQ-LL 92 (115)
T ss_pred HHHHHHHHHHHcCCEEEEECchhH-hH
Confidence 999999999999999999999999 55
No 55
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=98.95 E-value=3.1e-09 Score=90.55 Aligned_cols=95 Identities=22% Similarity=0.240 Sum_probs=70.8
Q ss_pred EEEEecCCCc-hhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhh--
Q 023800 163 ILVPIANGSE-EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA-- 239 (277)
Q Consensus 163 V~ill~~g~~-~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~-- 239 (277)
|+|+.+||.+ +.| .+++|+++|+++.+++.+.. +.+ ..+.++||.|++|||....+.+.
T Consensus 1 v~vl~~pG~n~~~~---~~~al~~aG~~v~~v~~~~~--~~~-------------~~~l~~~d~liipGG~~~~d~l~~~ 62 (238)
T cd01740 1 VAVLRFPGSNCDRD---MAYAFELAGFEAEDVWHNDL--LAG-------------RKDLDDYDGVVLPGGFSYGDYLRAG 62 (238)
T ss_pred CEEEEcCCcCCHHH---HHHHHHHcCCCEEEEeccCC--ccc-------------cCCHhhCCEEEECCCCCcccccccc
Confidence 5889999974 444 67888889999999977531 111 11234699999999964333222
Q ss_pred ---cCHH-HHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800 240 ---KSKK-LVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276 (277)
Q Consensus 240 ---~~~~-~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~ 276 (277)
.... +.++++++.+++++|++||.|.. +|+++|+|.
T Consensus 63 ~~~~~~~~~~~~l~~~~~~g~pvlGIC~G~Q-lL~~~gll~ 102 (238)
T cd01740 63 AIAAASPLLMEEVKEFAERGGLVLGICNGFQ-ILVELGLLP 102 (238)
T ss_pred cccccChhHHHHHHHHHhCCCeEEEECcHHH-HHHHcCCCc
Confidence 1223 88999999999999999999999 999999985
No 56
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=98.82 E-value=1.9e-08 Score=70.49 Aligned_cols=90 Identities=30% Similarity=0.462 Sum_probs=71.9
Q ss_pred EEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCH
Q 023800 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSK 242 (277)
Q Consensus 163 V~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~ 242 (277)
++++..++....++..+.+.+++.++++.+++.... .... ......+|.+++|||.........++
T Consensus 1 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------------~~~~~~~~~lii~g~~~~~~~~~~~~ 66 (92)
T cd03128 1 VAVLLFGGSEELELASPLDALREAGAEVDVVSPDGG-PVES-------------DVDLDDYDGLILPGGPGTPDDLAWDE 66 (92)
T ss_pred CEEEecCCcEEEeeecHHHHHHhCCCEEEEEeCCCC-cccc-------------cCCcccCCEEEECCCCcchhhhccCH
Confidence 467778888888889999999999999999998876 3222 12335799999999864333222468
Q ss_pred HHHHHHHHHHHcCCcEEEEchhhH
Q 023800 243 KLVNMLKKQKESNRPYGAICASPA 266 (277)
Q Consensus 243 ~~~~~l~~~~~~~~~i~aiC~G~~ 266 (277)
.+.+|++++++++++|+++|.|++
T Consensus 67 ~~~~~~~~~~~~~~~i~~~~~g~~ 90 (92)
T cd03128 67 ALLALLREAAAAGKPVLGICLGAQ 90 (92)
T ss_pred HHHHHHHHHHHcCCEEEEEecccc
Confidence 999999999999999999999998
No 57
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=98.79 E-value=4.3e-08 Score=80.77 Aligned_cols=94 Identities=23% Similarity=0.381 Sum_probs=72.5
Q ss_pred CCeEEEEecCCCc-hhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh
Q 023800 160 SPQILVPIANGSE-EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF 238 (277)
Q Consensus 160 ~~kV~ill~~g~~-~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~ 238 (277)
++||+|+.+||.+ +.|... +|+++|+++..|..+.. .+. .+||+|++|||+..-+.+
T Consensus 2 ~~kvaVi~fpGtN~d~d~~~---A~~~aG~~~~~V~~~d~---------------~~~----~~~d~vv~pGGFSyGDyL 59 (231)
T COG0047 2 RPKVAVLRFPGTNCDYDMAA---AFERAGFEAEDVWHSDL---------------LLG----RDFDGVVLPGGFSYGDYL 59 (231)
T ss_pred CceEEEEEcCCcCchHHHHH---HHHHcCCCceEEEeeec---------------ccC----CCccEEEEcCCCCccccc
Confidence 4799999999964 666554 45589999888866532 111 169999999998543333
Q ss_pred -----hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCCC
Q 023800 239 -----AKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLLK 276 (277)
Q Consensus 239 -----~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL~ 276 (277)
..-+++.+-+++++++|+++.+||+|-. +|.++|||-
T Consensus 60 r~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQ-iL~e~gLlP 101 (231)
T COG0047 60 RAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQ-ILSEAGLLP 101 (231)
T ss_pred CcchHHhhHHHHHHHHHHHHCCCeEEEEcchhH-HHHHcCcCC
Confidence 2236889999999999999999999999 899999984
No 58
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.75 E-value=3.1e-08 Score=76.88 Aligned_cols=111 Identities=21% Similarity=0.383 Sum_probs=83.2
Q ss_pred CCeEEEEe-----cCCCchhhHHHHHHHHHhCCCeEEEEeeCCCc----------eEEcccCcEEEeC-------cchhh
Q 023800 160 SPQILVPI-----ANGSEEMEAVIIIDILRRAKANVVVASVADKL----------EILASCQVKLVAD-------MLIDE 217 (277)
Q Consensus 160 ~~kV~ill-----~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~----------~v~~~~g~~i~~~-------~~~~~ 217 (277)
+|||++++ |||.+..|-+..+-.+.+.|.++..+.++..+ .+....+..++.. ..+..
T Consensus 1 mKkv~ViLSGCGV~DGaEIHEsVltllai~r~GA~~~cFAP~~~Q~hViNHlTGE~m~EtRNVLvEsARIaRG~i~~l~~ 80 (217)
T COG3155 1 MKKVGVILSGCGVYDGAEIHESVLTLLAISRSGAQAVCFAPDKQQVHVINHLTGEAMPETRNVLVESARIARGEIRPLAQ 80 (217)
T ss_pred CceeEEEeecCcccchHHHHHHHHHHHHHHhcCceeEEecCCchhhhhhhhccccccchhhhHHHHHHHHhhccccchhh
Confidence 47888887 47888899999999999999999999987641 1111122212111 23445
Q ss_pred hccCCccEEEEcCCcchHHhhh----------cCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800 218 AAKLSYDLIVLPGGLGGAQAFA----------KSKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (277)
Q Consensus 218 ~~~~~~D~livpGG~~~~~~~~----------~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~ 271 (277)
.+++.||++++|||++...++. -++++..+.+.+++.||+++-+|-.+. +|.+
T Consensus 81 a~~e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~-m~pk 143 (217)
T COG3155 81 ADAEELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPA-MLPK 143 (217)
T ss_pred cCHHhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHH-HHHH
Confidence 5678899999999998666542 268999999999999999999999999 6754
No 59
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.74 E-value=8.6e-08 Score=79.60 Aligned_cols=92 Identities=20% Similarity=0.252 Sum_probs=73.0
Q ss_pred CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchH-Hhhh
Q 023800 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA-QAFA 239 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~-~~~~ 239 (277)
+||++++.+|........+.+.|+..|++++++..+.. +++ .+||.|++|||.... ..+.
T Consensus 1 ~~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~~-----------------~~l--~~~d~iii~GG~~~~~~~~~ 61 (200)
T PRK13527 1 MKIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRRP-----------------GDL--PDCDALIIPGGESTTIGRLM 61 (200)
T ss_pred CEEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCCh-----------------HHh--ccCCEEEECCCcHHHHHHHH
Confidence 48999999999988888899999999988877755321 222 469999999985422 1233
Q ss_pred cCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 240 ~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
....+.++|+++.+++++|.+||.|.. +|+++
T Consensus 62 ~~~~~~~~i~~~~~~~~pilGIC~G~Q-ll~~~ 93 (200)
T PRK13527 62 KREGILDEIKEKIEEGLPILGTCAGLI-LLAKE 93 (200)
T ss_pred hhccHHHHHHHHHHCCCeEEEECHHHH-HHHhh
Confidence 445689999999999999999999999 89986
No 60
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.63 E-value=1.5e-07 Score=75.87 Aligned_cols=83 Identities=18% Similarity=0.308 Sum_probs=62.6
Q ss_pred CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHH--hh
Q 023800 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ--AF 238 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~--~~ 238 (277)
+||+|+...|-... -..+|++.|+++.++... +++ ++||.|++|||. ... .+
T Consensus 3 ~~igVLalqG~~~E----h~~al~~lG~~v~~v~~~-------------------~~l--~~~D~LILPGG~-~t~~~~l 56 (179)
T PRK13526 3 QKVGVLAIQGGYQK----HADMFKSLGVEVKLVKFN-------------------NDF--DSIDRLVIPGGE-STTLLNL 56 (179)
T ss_pred cEEEEEECCccHHH----HHHHHHHcCCcEEEECCH-------------------HHH--hCCCEEEECCCh-HHHHHHH
Confidence 68999999985443 567788888876555311 222 468999999995 333 44
Q ss_pred hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800 239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (277)
Q Consensus 239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~ 271 (277)
..+..+.+.|+++.+ ++++.+||.|.. +|++
T Consensus 57 l~~~~l~~~Ik~~~~-~kpilGICaG~q-lL~~ 87 (179)
T PRK13526 57 LNKHQIFDKLYNFCS-SKPVFGTCAGSI-ILSK 87 (179)
T ss_pred hhhcCcHHHHHHHHc-CCcEEEEcHHHH-HHHc
Confidence 555679999999875 789999999999 8998
No 61
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=98.58 E-value=2.4e-07 Score=75.81 Aligned_cols=85 Identities=18% Similarity=0.168 Sum_probs=65.6
Q ss_pred eEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchH-Hhhhc
Q 023800 162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA-QAFAK 240 (277)
Q Consensus 162 kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~-~~~~~ 240 (277)
||+|+...|.... ..++|++.|.++.++++. ++ .+++|+|+||||.... ..+..
T Consensus 1 ~igvl~~qg~~~e----~~~~l~~~g~~~~~v~~~-------------------~~--l~~~d~liipGG~~~~~~~l~~ 55 (184)
T TIGR03800 1 KIGVLALQGAVRE----HARALEALGVEGVEVKRP-------------------EQ--LDEIDGLIIPGGESTTLSRLLD 55 (184)
T ss_pred CEEEEEccCCHHH----HHHHHHHCCCEEEEECCh-------------------HH--hccCCEEEECCCCHHHHHHHHH
Confidence 5889998885443 559999999998888542 12 2468999999996322 12344
Q ss_pred CHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 241 ~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
+..+.++|+++.+++++|.+||.|.. +|+++
T Consensus 56 ~~~l~~~i~~~~~~g~pilGIC~G~q-lL~~~ 86 (184)
T TIGR03800 56 KYGMFEPLRNFILSGLPVFGTCAGLI-MLAKE 86 (184)
T ss_pred hccHHHHHHHHHHcCCcEEEECHHHH-HHHhh
Confidence 55788999999999999999999999 89987
No 62
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=98.58 E-value=2.3e-07 Score=79.70 Aligned_cols=98 Identities=19% Similarity=0.257 Sum_probs=66.4
Q ss_pred CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh--
Q 023800 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF-- 238 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~-- 238 (277)
+||+|+.+||.+-.. ..+.+|+.+|+++..|..+.- . -.+....+||+|++|||+..-+.+
T Consensus 2 pkV~Vl~~pGtNce~--e~~~A~~~aG~~~~~v~~~dl--~-------------~~~~~l~~~~~lvipGGFS~gD~l~s 64 (259)
T PF13507_consen 2 PKVAVLRFPGTNCER--ETAAAFENAGFEPEIVHINDL--L-------------SGESDLDDFDGLVIPGGFSYGDYLRS 64 (259)
T ss_dssp -EEEEEE-TTEEEHH--HHHHHHHCTT-EEEEEECCHH--H-------------TTS--GCC-SEEEE-EE-GGGGTTST
T ss_pred CEEEEEECCCCCCHH--HHHHHHHHcCCCceEEEEEec--c-------------cccCchhhCcEEEECCccCccccchH
Confidence 589999999975322 345778889999998875420 0 011134579999999987543433
Q ss_pred --------hcCHHHHHHHHHHHHc-CCcEEEEchhhHHhhhhCCCCC
Q 023800 239 --------AKSKKLVNMLKKQKES-NRPYGAICASPALVLEPHGLLK 276 (277)
Q Consensus 239 --------~~~~~~~~~l~~~~~~-~~~i~aiC~G~~~lLa~aGlL~ 276 (277)
..++.+.+.|++++++ ++++.+||.|-. +|.++|||.
T Consensus 65 g~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQ-iL~~~Gllp 110 (259)
T PF13507_consen 65 GAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQ-ILVELGLLP 110 (259)
T ss_dssp THHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHH-HHCCCCCST
T ss_pred HHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhH-HHHHhCcCC
Confidence 2245678899999998 999999999999 999999984
No 63
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.43 E-value=1.1e-06 Score=72.92 Aligned_cols=76 Identities=22% Similarity=0.253 Sum_probs=59.1
Q ss_pred HHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcch--HHhhhcCHHHHHHHHHHHHc
Q 023800 177 VIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG--AQAFAKSKKLVNMLKKQKES 254 (277)
Q Consensus 177 ~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~--~~~~~~~~~~~~~l~~~~~~ 254 (277)
..-++.|+++|.++.++++..+ +++ .++|+|++|||... ...+..+..+.+.|+++.++
T Consensus 14 ~e~~~~l~~~G~~v~~~s~~~~-----------------~~l--~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~ 74 (198)
T cd03130 14 PENLELLEAAGAELVPFSPLKD-----------------EEL--PDADGLYLGGGYPELFAEELSANQSMRESIRAFAES 74 (198)
T ss_pred HHHHHHHHHCCCEEEEECCCCC-----------------CCC--CCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHc
Confidence 4456888899999999886422 122 24899999999632 34566667899999999999
Q ss_pred CCcEEEEchhhHHhhhhC
Q 023800 255 NRPYGAICASPALVLEPH 272 (277)
Q Consensus 255 ~~~i~aiC~G~~~lLa~a 272 (277)
|++|.+||.|.+ +|++.
T Consensus 75 g~pilgICgG~q-lL~~~ 91 (198)
T cd03130 75 GGPIYAECGGLM-YLGES 91 (198)
T ss_pred CCCEEEEcccHH-HHHHH
Confidence 999999999999 89764
No 64
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.41 E-value=1.7e-06 Score=71.20 Aligned_cols=86 Identities=21% Similarity=0.235 Sum_probs=63.7
Q ss_pred CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchH-Hhhh
Q 023800 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA-QAFA 239 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~-~~~~ 239 (277)
++|+|+...|....- ++.|+.+|.++..++.. .+ .++||.|++|||.... +...
T Consensus 2 m~~~i~~~~g~~~~~----~~~l~~~g~~~~~~~~~-------------------~~--l~~~dgiii~GG~~~~~~~~~ 56 (189)
T PRK13525 2 MKIGVLALQGAVREH----LAALEALGAEAVEVRRP-------------------ED--LDEIDGLILPGGESTTMGKLL 56 (189)
T ss_pred CEEEEEEcccCHHHH----HHHHHHCCCEEEEeCCh-------------------hH--hccCCEEEECCCChHHHHHHH
Confidence 689999888644322 46688889888777531 12 2469999999996322 1233
Q ss_pred cCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 240 ~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
....+.++++++.+++++|.+||.|.. +|+++
T Consensus 57 ~~~~~~~~i~~~~~~g~PilGIC~G~Q-lL~~~ 88 (189)
T PRK13525 57 RDFGLLEPLREFIASGLPVFGTCAGMI-LLAKE 88 (189)
T ss_pred HhccHHHHHHHHHHCCCeEEEECHHHH-HHHhh
Confidence 455678999999999999999999999 89873
No 65
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=98.35 E-value=2.3e-06 Score=72.99 Aligned_cols=83 Identities=19% Similarity=0.163 Sum_probs=58.1
Q ss_pred hHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchhccc-----cChH-HHHHHHHHHhCCC
Q 023800 5 ITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLK-----ESEV-LESIVKKQASDGR 75 (277)
Q Consensus 5 ~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~~~~-----~~~~-~~~~l~~~~~~g~ 75 (277)
..++.|+++|+++.+++... .+.. ...+++++.. ||....+.++ .... +.++++++.++|+
T Consensus 14 ~~~~al~~aG~~v~~v~~~~--~~~~--------~~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~~g~ 83 (238)
T cd01740 14 DMAYAFELAGFEAEDVWHND--LLAG--------RKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAERGG 83 (238)
T ss_pred HHHHHHHHcCCCEEEEeccC--Cccc--------cCCHhhCCEEEECCCCCcccccccccccccChhHHHHHHHHHhCCC
Confidence 35788999999999998764 2222 1123333322 6632222222 1223 8899999999999
Q ss_pred EEEEEchhHHHHHHHcCCCCCCC
Q 023800 76 LYAAICVFLAVALGSWGLLKGLK 98 (277)
Q Consensus 76 ~i~aiC~g~~~~La~aGll~g~~ 98 (277)
+|.+||.|.. +|+++|+|.|+.
T Consensus 84 pvlGIC~G~Q-lL~~~gll~g~~ 105 (238)
T cd01740 84 LVLGICNGFQ-ILVELGLLPGAL 105 (238)
T ss_pred eEEEECcHHH-HHHHcCCCcccc
Confidence 9999999999 999999999865
No 66
>PRK08250 glutamine amidotransferase; Provisional
Probab=98.31 E-value=5e-06 Score=70.72 Aligned_cols=94 Identities=12% Similarity=0.193 Sum_probs=67.2
Q ss_pred CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh-hh
Q 023800 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA-FA 239 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~-~~ 239 (277)
+||.|+....++..+.. .++++.+|+++++.....+ -.+ + . +.++||+|||.||..+... ..
T Consensus 1 m~i~vi~h~~~e~~g~~--~~~~~~~g~~~~~~~~~~g--------~~~-p----~--~~~~~d~vii~GGp~~~~~~~~ 63 (235)
T PRK08250 1 MRVHFIIHESFEAPGAY--LKWAENRGYDISYSRVYAG--------EAL-P----E--NADGFDLLIVMGGPQSPRTTRE 63 (235)
T ss_pred CeEEEEecCCCCCchHH--HHHHHHCCCeEEEEEccCC--------CCC-C----C--CccccCEEEECCCCCChhhccc
Confidence 47889888888887764 5566889998888654332 111 1 1 1347999999999543221 11
Q ss_pred cC-----HHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 240 KS-----KKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 240 ~~-----~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
.. ....+||+++.+++++|.+||.|.. +||++
T Consensus 64 ~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q-lla~a 100 (235)
T PRK08250 64 ECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQ-LIGEA 100 (235)
T ss_pred cccccchHHHHHHHHHHHHcCCCEEEEChhHH-HHHHH
Confidence 12 4668999999999999999999999 89875
No 67
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=98.29 E-value=3.3e-06 Score=71.05 Aligned_cols=75 Identities=21% Similarity=0.210 Sum_probs=53.6
Q ss_pred HHHHH-hCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchh-----ccccChHHHHHHHHHHhCCCEE
Q 023800 7 IDVLR-RSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGAT-----NLKESEVLESIVKKQASDGRLY 77 (277)
Q Consensus 7 ~~~l~-~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~-----~~~~~~~~~~~l~~~~~~g~~i 77 (277)
+..|+ ..|+++..++.+. . .+++++.. ||....+ ....++.+.+||+++.++|+++
T Consensus 18 ~~a~~~~~G~~~~~v~~~~-~--------------~l~~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~~g~~i 82 (219)
T PRK03619 18 ARALRDLLGAEPEYVWHKE-T--------------DLDGVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGKPV 82 (219)
T ss_pred HHHHHhcCCCeEEEEecCc-C--------------CCCCCCEEEECCCCchhhhhccchhhhchHHHHHHHHHHHCCCEE
Confidence 56787 7899988887643 1 12222221 5532111 1234578999999999999999
Q ss_pred EEEchhHHHHHHHcCCCCCC
Q 023800 78 AAICVFLAVALGSWGLLKGL 97 (277)
Q Consensus 78 ~aiC~g~~~~La~aGll~g~ 97 (277)
++||+|++ +|+++|||+|+
T Consensus 83 lgIC~G~q-lLa~~GLL~g~ 101 (219)
T PRK03619 83 LGICNGFQ-ILTEAGLLPGA 101 (219)
T ss_pred EEECHHHH-HHHHcCCCCCe
Confidence 99999999 99999999863
No 68
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.26 E-value=7.4e-06 Score=67.99 Aligned_cols=87 Identities=26% Similarity=0.267 Sum_probs=64.9
Q ss_pred CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhc
Q 023800 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK 240 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~ 240 (277)
+||+|+=+.+-+. ....++|+.+|+++.+++. ..++ ++||+|++|||....+....
T Consensus 1 ~~~~v~~~~~~~~---~~~~~~l~~~G~~~~~~~~-------------------~~~~--~~~d~iii~G~~~~~~~~~~ 56 (200)
T PRK13143 1 MMIVIIDYGVGNL---RSVSKALERAGAEVVITSD-------------------PEEI--LDADGIVLPGVGAFGAAMEN 56 (200)
T ss_pred CeEEEEECCCccH---HHHHHHHHHCCCeEEEECC-------------------HHHH--ccCCEEEECCCCCHHHHHHH
Confidence 4678877665444 4567889999999888731 0122 46999999996322333455
Q ss_pred CHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 241 ~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
.+.+.++++++.++++++.+||.|.. +|+++
T Consensus 57 ~~~~~~~i~~~~~~~~PilgIC~G~q-~l~~~ 87 (200)
T PRK13143 57 LSPLRDVILEAARSGKPFLGICLGMQ-LLFES 87 (200)
T ss_pred HHHHHHHHHHHHHcCCCEEEECHHHH-HHhhh
Confidence 56789999999999999999999999 89975
No 69
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=98.26 E-value=5.6e-06 Score=68.40 Aligned_cols=87 Identities=22% Similarity=0.210 Sum_probs=61.8
Q ss_pred EEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhc--
Q 023800 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK-- 240 (277)
Q Consensus 163 V~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~-- 240 (277)
|+++.++...- +.....+++..|+++.++++..+ ++++|.|++|||......+..
T Consensus 1 ~~~~~y~~~gN--~~~l~~~~~~~G~~~~~~~~~~~---------------------~~~~d~lilpGg~~~~~~~~~~~ 57 (194)
T cd01750 1 IAVIRYPDISN--FTDLDPLAREPGVDVRYVEVPEG---------------------LGDADLIILPGSKDTIQDLAWLR 57 (194)
T ss_pred CEeecCCCccC--HHHHHHHHhcCCceEEEEeCCCC---------------------CCCCCEEEECCCcchHHHHHHHH
Confidence 35666764222 23445666778899988876431 246899999998643333333
Q ss_pred CHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCC
Q 023800 241 SKKLVNMLKKQKESNRPYGAICASPALVLEPHG 273 (277)
Q Consensus 241 ~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aG 273 (277)
+..+.+.|+++.+++++|.+||.|.. +|++.-
T Consensus 58 ~~~~~~~i~~~~~~g~pvlgiC~G~q-lL~~~~ 89 (194)
T cd01750 58 KRGLAEAIKNYARAGGPVLGICGGYQ-MLGKYI 89 (194)
T ss_pred HcCHHHHHHHHHHCCCcEEEECHHHH-Hhhhhc
Confidence 45688999999999999999999999 898753
No 70
>PRK07053 glutamine amidotransferase; Provisional
Probab=98.20 E-value=1.2e-05 Score=68.37 Aligned_cols=96 Identities=17% Similarity=0.180 Sum_probs=67.4
Q ss_pred CCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh-
Q 023800 159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA- 237 (277)
Q Consensus 159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~- 237 (277)
+|++|.|+-....+.. ..+.+.|+..|++++++....+ +....+ ..+||.|||+||..+...
T Consensus 1 ~m~~ilviqh~~~e~~--g~i~~~L~~~g~~~~v~~~~~~-------------~~~~~~--~~~~d~lii~Ggp~~~~d~ 63 (234)
T PRK07053 1 MMKTAVAIRHVAFEDL--GSFEQVLGARGYRVRYVDVGVD-------------DLETLD--ALEPDLLVVLGGPIGVYDD 63 (234)
T ss_pred CCceEEEEECCCCCCC--hHHHHHHHHCCCeEEEEecCCC-------------ccCCCC--ccCCCEEEECCCCCCCCCC
Confidence 4678888765544443 4578899999999988876433 110111 246999999998532221
Q ss_pred --hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 238 --FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 238 --~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
.....++.++|+++.+.++++.+||.|.. +||++
T Consensus 64 ~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Q-lla~a 99 (234)
T PRK07053 64 ELYPFLAPEIALLRQRLAAGLPTLGICLGAQ-LIARA 99 (234)
T ss_pred CcCCcHHHHHHHHHHHHHCCCCEEEECccHH-HHHHH
Confidence 12234788999999999999999999999 89875
No 71
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=98.16 E-value=1.1e-05 Score=68.68 Aligned_cols=87 Identities=24% Similarity=0.290 Sum_probs=64.2
Q ss_pred CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcch-HHhh
Q 023800 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG-AQAF 238 (277)
Q Consensus 160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~-~~~~ 238 (277)
++||+||.+.|-.. | ..++|++.|.++.+++.. +++ .++|.||+|||... ...+
T Consensus 1 ~m~igVLa~qG~~~-e---~~~aL~~lG~ev~~v~~~-------------------~~L--~~~DgLILPGGfs~~~~~L 55 (248)
T PLN02832 1 MMAIGVLALQGSFN-E---HIAALRRLGVEAVEVRKP-------------------EQL--EGVSGLIIPGGESTTMAKL 55 (248)
T ss_pred CcEEEEEeCCCchH-H---HHHHHHHCCCcEEEeCCH-------------------HHh--ccCCEEEeCCCHHHHHHHH
Confidence 36899999998433 2 258888888887666541 222 36899999998642 2233
Q ss_pred hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
.....+.+.|+++.++|+++.++|.|.. +|++.
T Consensus 56 ~~~~gl~~~I~~~v~~g~PvLGiC~Gmq-lLa~~ 88 (248)
T PLN02832 56 AERHNLFPALREFVKSGKPVWGTCAGLI-FLAER 88 (248)
T ss_pred HhhcchHHHHHHHHHcCCCEEEEChhHH-HHHHH
Confidence 3334688899999999999999999999 89875
No 72
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.12 E-value=2e-05 Score=73.54 Aligned_cols=90 Identities=20% Similarity=0.195 Sum_probs=67.8
Q ss_pred CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcch--HHhh
Q 023800 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG--AQAF 238 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~--~~~~ 238 (277)
.+|+|+-.+-|+. -+..=++.|+..|.++..+++-.. .++ +++|+|++|||... ...+
T Consensus 246 ~~iava~d~af~f-~y~e~~~~L~~~g~~~~~~~~~~~-----------------~~l--~~~D~lilpGG~~~~~~~~l 305 (451)
T PRK01077 246 VRIAVARDAAFNF-YYPENLELLRAAGAELVFFSPLAD-----------------EAL--PDCDGLYLGGGYPELFAAEL 305 (451)
T ss_pred ceEEEEecCcccc-cHHHHHHHHHHCCCEEEEeCCcCC-----------------CCC--CCCCEEEeCCCchhhHHHHH
Confidence 5899988774433 223345788888999988876322 112 36899999999743 3446
Q ss_pred hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800 239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (277)
Q Consensus 239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~ 271 (277)
..+..+.+.|+++.++|++|.++|.|.. +|++
T Consensus 306 ~~~~~~~~~i~~~~~~g~~i~aiCgG~~-~L~~ 337 (451)
T PRK01077 306 AANTSMRASIRAAAAAGKPIYAECGGLM-YLGE 337 (451)
T ss_pred hhCchhHHHHHHHHHcCCCEEEEcHHHH-HHHh
Confidence 6778899999999999999999999999 7876
No 73
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=98.08 E-value=1.4e-05 Score=65.42 Aligned_cols=84 Identities=19% Similarity=0.282 Sum_probs=61.7
Q ss_pred EEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHH-hhhcC
Q 023800 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ-AFAKS 241 (277)
Q Consensus 163 V~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~-~~~~~ 241 (277)
|+++..+|....-. +.|++.|.++..+++.. + ..++|.|++|||..... .....
T Consensus 1 igvl~~qg~~~e~~----~~l~~~g~~v~~v~~~~-------------------~--l~~~dgiii~Gg~~~~~~~~~~~ 55 (183)
T cd01749 1 IGVLALQGDFREHI----RALERLGVEVIEVRTPE-------------------D--LEGIDGLIIPGGESTTIGKLLRR 55 (183)
T ss_pred CEEEEecCCcHHHH----HHHHHCCCeEEEECCHH-------------------H--hccCCEEEECCchHHHHHHHHHh
Confidence 46777776554222 88999999998886521 1 24689999999863222 12234
Q ss_pred HHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 242 KKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 242 ~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
..+.++|+++.++++++.++|.|.. +|+++
T Consensus 56 ~~~~~~i~~~~~~g~PvlGiC~G~q-lL~~~ 85 (183)
T cd01749 56 TGLLDPLREFIRAGKPVFGTCAGLI-LLAKE 85 (183)
T ss_pred CCHHHHHHHHHHcCCeEEEECHHHH-HHHHH
Confidence 5678999999999999999999999 89874
No 74
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=98.03 E-value=2.9e-05 Score=63.71 Aligned_cols=92 Identities=24% Similarity=0.371 Sum_probs=62.7
Q ss_pred eEEEEecCCCchhhHHHHHHHHHhCC---CeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchH--H
Q 023800 162 QILVPIANGSEEMEAVIIIDILRRAK---ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA--Q 236 (277)
Q Consensus 162 kV~ill~~g~~~~e~~~~~~~l~~a~---~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~--~ 236 (277)
||+|+..+.... .....++++.++ ++++++-...+ . . ..+ .++||.|+++||.... .
T Consensus 1 ~i~il~~~~~~~--~~~~~~~l~~~g~~~~~~~~~~~~~~-~------------~-~~~--~~~~dgvil~Gg~~~~~~~ 62 (188)
T cd01741 1 RILILQHDTPEG--PGLFEDLLREAGAETIEIDVVDVYAG-E------------L-LPD--LDDYDGLVILGGPMSVDED 62 (188)
T ss_pred CEEEEECCCCCC--cchHHHHHHhcCCCCceEEEEecCCC-C------------C-CCC--cccCCEEEECCCCccCCcc
Confidence 466666654443 556667788877 57766655433 1 0 112 3579999999986433 1
Q ss_pred hhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 237 AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 237 ~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
.....+.+.++|+++.++++++.+||.|.. +|+.+
T Consensus 63 ~~~~~~~~~~~i~~~~~~~~pilgiC~G~q-~l~~~ 97 (188)
T cd01741 63 DYPWLKKLKELIRQALAAGKPVLGICLGHQ-LLARA 97 (188)
T ss_pred CChHHHHHHHHHHHHHHCCCCEEEECccHH-HHHHH
Confidence 112236789999999999999999999999 88763
No 75
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=97.99 E-value=4e-05 Score=78.32 Aligned_cols=105 Identities=17% Similarity=0.319 Sum_probs=74.3
Q ss_pred CCCeEEEEecCCCc-hhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhh--ccCCccEEEEcCCcchH
Q 023800 159 NSPQILVPIANGSE-EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEA--AKLSYDLIVLPGGLGGA 235 (277)
Q Consensus 159 ~~~kV~ill~~g~~-~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~--~~~~~D~livpGG~~~~ 235 (277)
..+||+|+.+||.+ +.|.. .+|.++|+++..+..+.- .... + ..++++. ...+||+|++|||+..-
T Consensus 976 ~kpkvaIl~~pGtNce~d~a---~Af~~aG~~~~~v~~~dl--~~~~----i--~~s~~~~~~~l~~~~~l~~pGGFSyG 1044 (1239)
T TIGR01857 976 EKPRVVIPVFPGTNSEYDSA---KAFEKEGAEVNLVIFRNL--NEEA----L--VESVETMVDEIDKSQILMLPGGFSAG 1044 (1239)
T ss_pred CCCeEEEEECCCCCCHHHHH---HHHHHcCCceEEEEEecC--cccc----c--ccchhhhhcccccCcEEEEcCccCcc
Confidence 35799999999975 55554 455569998888875431 0000 0 0111111 13579999999987532
Q ss_pred Hh----------hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCC
Q 023800 236 QA----------FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLL 275 (277)
Q Consensus 236 ~~----------~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL 275 (277)
+. ...++++.+-+++|+++++++.+||+|-. +|.++|||
T Consensus 1045 D~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ-~L~~lGLl 1093 (1239)
T TIGR01857 1045 DEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQ-ALVKSGLL 1093 (1239)
T ss_pred cccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHH-HHHHcCCC
Confidence 22 24467899999999999999999999999 89999998
No 76
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=97.92 E-value=5.5e-05 Score=64.06 Aligned_cols=75 Identities=23% Similarity=0.256 Sum_probs=53.2
Q ss_pred HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchh-----ccccChHHHHHHHHHHhCCCEE
Q 023800 6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGAT-----NLKESEVLESIVKKQASDGRLY 77 (277)
Q Consensus 6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~-----~~~~~~~~~~~l~~~~~~g~~i 77 (277)
.++.|++.|+++.++.... .. +++++.. ||....+ .+..+..+.++++++.++|++|
T Consensus 17 ~~~al~~~G~~~~~i~~~~-~~--------------l~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~pv 81 (227)
T TIGR01737 17 TVYALRLLGVDAEIVWYED-GS--------------LPDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVPV 81 (227)
T ss_pred HHHHHHHCCCeEEEEecCC-CC--------------CCCCCEEEECCCCcccccccccchhcchHHHHHHHHHHHcCCEE
Confidence 4678888999988886543 11 2222221 5531111 1233567889999999999999
Q ss_pred EEEchhHHHHHHHcCCCCC
Q 023800 78 AAICVFLAVALGSWGLLKG 96 (277)
Q Consensus 78 ~aiC~g~~~~La~aGll~g 96 (277)
.+||.|.+ +|+++|+|+|
T Consensus 82 lgIC~G~Q-lLa~~GlL~G 99 (227)
T TIGR01737 82 LGICNGFQ-ILVEAGLLPG 99 (227)
T ss_pred EEECHHHH-HHHHcCCCCC
Confidence 99999999 9999999985
No 77
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.91 E-value=5.8e-05 Score=62.85 Aligned_cols=85 Identities=25% Similarity=0.271 Sum_probs=59.4
Q ss_pred EEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhh--c
Q 023800 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA--K 240 (277)
Q Consensus 163 V~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~--~ 240 (277)
|.|+-+.+-+ ...+.+.|++.|.++.++.. ..++ .+||.|+|||+....+... .
T Consensus 2 i~~~d~~~~~---~~~i~~~l~~~G~~v~~~~~-------------------~~~l--~~~d~iiipG~~~~~~~~~~~~ 57 (205)
T PRK13141 2 IAIIDYGMGN---LRSVEKALERLGAEAVITSD-------------------PEEI--LAADGVILPGVGAFPDAMANLR 57 (205)
T ss_pred EEEEEcCCch---HHHHHHHHHHCCCeEEEECC-------------------HHHh--ccCCEEEECCCCchHHHHHHHH
Confidence 4455444333 36678899999998888631 1222 4699999999642222211 1
Q ss_pred CHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 241 ~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
.+.+.++|+++.++++++.+||.|.+ +|++.
T Consensus 58 ~~~~~~~i~~~~~~~~pvlGIC~G~Q-ll~~~ 88 (205)
T PRK13141 58 ERGLDEVIKEAVASGKPLLGICLGMQ-LLFES 88 (205)
T ss_pred HcChHHHHHHHHHCCCcEEEECHHHH-Hhhhc
Confidence 23578999999999999999999999 89985
No 78
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=97.91 E-value=7.9e-05 Score=76.74 Aligned_cols=99 Identities=14% Similarity=0.195 Sum_probs=73.0
Q ss_pred CCCeEEEEecCCCc-hhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchH--
Q 023800 159 NSPQILVPIANGSE-EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA-- 235 (277)
Q Consensus 159 ~~~kV~ill~~g~~-~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~-- 235 (277)
..+||+|+.+||.+ +.|. ..+|..+|+++..|..+. ...+ .. ...+|+.|++|||+..-
T Consensus 1036 ~~pkVaVl~~pGtN~~~e~---~~Af~~aGf~~~~V~~~d--l~~~--------~~-----~L~~~~glv~pGGFSyGD~ 1097 (1307)
T PLN03206 1036 SKPKVAIIREEGSNGDREM---AAAFYAAGFEPWDVTMSD--LLNG--------RI-----SLDDFRGIVFVGGFSYADV 1097 (1307)
T ss_pred CCCeEEEEECCCCCCHHHH---HHHHHHcCCceEEEEeee--cccc--------cc-----cccceeEEEEcCcCCCccc
Confidence 35799999999975 4444 456668999887776542 1111 11 13469999999997421
Q ss_pred --------HhhhcCHHHHHHHHHHH-HcCCcEEEEchhhHHhhhhCCCCC
Q 023800 236 --------QAFAKSKKLVNMLKKQK-ESNRPYGAICASPALVLEPHGLLK 276 (277)
Q Consensus 236 --------~~~~~~~~~~~~l~~~~-~~~~~i~aiC~G~~~lLa~aGlL~ 276 (277)
..+..++.+.+.+++|+ +.++.+.+||+|-. +|.+.|||-
T Consensus 1098 l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQ-iL~~lgllP 1146 (1307)
T PLN03206 1098 LDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQ-LMALLGWVP 1146 (1307)
T ss_pred cchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHHH-HHHHcCCCC
Confidence 23456788999999999 55999999999999 899999983
No 79
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=97.88 E-value=8.3e-05 Score=60.51 Aligned_cols=73 Identities=23% Similarity=0.290 Sum_probs=55.1
Q ss_pred HHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcE
Q 023800 179 IIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPY 258 (277)
Q Consensus 179 ~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i 258 (277)
..+.++.+|.++.++..+.. .++.+..+||.|+++||...+. ......++++++.+++++|
T Consensus 12 ~~~~l~~~G~~~~~~~~~~~----------------~~~~~~~~~dgiil~GG~~~~~---~~~~~~~~~~~~~~~~~Pv 72 (178)
T cd01744 12 ILRELLKRGCEVTVVPYNTD----------------AEEILKLDPDGIFLSNGPGDPA---LLDEAIKTVRKLLGKKIPI 72 (178)
T ss_pred HHHHHHHCCCeEEEEECCCC----------------HHHHhhcCCCEEEECCCCCChh---HhHHHHHHHHHHHhCCCCE
Confidence 47788888998888865432 2222234699999999853332 3467788999999999999
Q ss_pred EEEchhhHHhhhh
Q 023800 259 GAICASPALVLEP 271 (277)
Q Consensus 259 ~aiC~G~~~lLa~ 271 (277)
.+||.|.. +|+.
T Consensus 73 lGIC~G~Q-~l~~ 84 (178)
T cd01744 73 FGICLGHQ-LLAL 84 (178)
T ss_pred EEECHHHH-HHHH
Confidence 99999999 7876
No 80
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=97.88 E-value=7.3e-05 Score=77.35 Aligned_cols=99 Identities=12% Similarity=0.139 Sum_probs=73.0
Q ss_pred CCCeEEEEecCCCc-hhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchH--
Q 023800 159 NSPQILVPIANGSE-EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA-- 235 (277)
Q Consensus 159 ~~~kV~ill~~g~~-~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~-- 235 (277)
+.+||+|+.+||.+ +.|.. .+|..+|+++..|..+.- .-.....++|+.|++|||+..-
T Consensus 1054 ~~p~vail~~pG~N~~~e~~---~Af~~aGf~~~~v~~~dl---------------~~~~~~l~~~~~lv~~GGFSygD~ 1115 (1310)
T TIGR01735 1054 VRPKVAILREQGVNGDREMA---AAFDRAGFEAWDVHMSDL---------------LAGRVHLDEFRGLAACGGFSYGDV 1115 (1310)
T ss_pred CCceEEEEECCCCCCHHHHH---HHHHHhCCCcEEEEEecc---------------ccCCcchhheeEEEEcCCCCCccc
Confidence 45799999999976 44544 466689998888865421 0001123468999999986421
Q ss_pred --------HhhhcCHHHHHHHHHHH-HcCCcEEEEchhhHHhhh-hCCCCC
Q 023800 236 --------QAFAKSKKLVNMLKKQK-ESNRPYGAICASPALVLE-PHGLLK 276 (277)
Q Consensus 236 --------~~~~~~~~~~~~l~~~~-~~~~~i~aiC~G~~~lLa-~aGlL~ 276 (277)
..+..++++.+.+++|+ +.++.+.+||+|-. +|. ++|||-
T Consensus 1116 lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ-~L~~~~gllp 1165 (1310)
T TIGR01735 1116 LGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQ-MLSNLLEWIP 1165 (1310)
T ss_pred hhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHH-HHHHHhCcCC
Confidence 12455789999999999 88999999999999 898 899873
No 81
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=97.87 E-value=6e-05 Score=64.96 Aligned_cols=82 Identities=22% Similarity=0.333 Sum_probs=55.4
Q ss_pred hHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchhccccC--------hHHHHHHHHHHhC
Q 023800 5 ITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLKES--------EVLESIVKKQASD 73 (277)
Q Consensus 5 ~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~~~~~~--------~~~~~~l~~~~~~ 73 (277)
.+++.|+++|+++.+++... . . .....+++++.. ||....+.++.. +.+.+.|+++.++
T Consensus 19 e~~~Al~~aG~~v~~v~~~~-~-~--------~~~~~l~~~DgLvipGGfs~gD~l~~g~~~~~~l~~~l~~~Ik~f~~~ 88 (261)
T PRK01175 19 ETVKAFRRLGVEPEYVHIND-L-A--------AERKSVSDYDCLVIPGGFSAGDYIRAGAIFAARLKAVLRKDIEEFIDE 88 (261)
T ss_pred HHHHHHHHCCCcEEEEeecc-c-c--------ccccchhhCCEEEECCCCCcccccccchhhHHHHHHHHHHHHHHHHHC
Confidence 45789999999999998753 1 0 001123333332 653222222221 2345789999999
Q ss_pred CCEEEEEchhHHHHHHHcCCCCCC
Q 023800 74 GRLYAAICVFLAVALGSWGLLKGL 97 (277)
Q Consensus 74 g~~i~aiC~g~~~~La~aGll~g~ 97 (277)
|++|.+||.|.. +|+++|+|.|.
T Consensus 89 gkpVLGICnG~Q-lLa~~GlLpg~ 111 (261)
T PRK01175 89 GYPIIGICNGFQ-VLVELGLLPGF 111 (261)
T ss_pred CCeEEEECHHHH-HHHHCCCCCCC
Confidence 999999999999 99999999873
No 82
>PRK06490 glutamine amidotransferase; Provisional
Probab=97.84 E-value=0.00013 Score=62.28 Aligned_cols=96 Identities=14% Similarity=0.155 Sum_probs=67.1
Q ss_pred CCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh-
Q 023800 159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA- 237 (277)
Q Consensus 159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~- 237 (277)
.++||.++.--+++... ...+.|+..|.+++++.+..+.+ .| ++ .++||.++|.||..+..+
T Consensus 6 ~~~~vlvi~h~~~~~~g--~l~~~l~~~g~~~~v~~~~~~~~---------~p----~~--l~~~dgvii~Ggp~~~~d~ 68 (239)
T PRK06490 6 DKRPVLIVLHQERSTPG--RVGQLLQERGYPLDIRRPRLGDP---------LP----DT--LEDHAGAVIFGGPMSANDP 68 (239)
T ss_pred CCceEEEEecCCCCCCh--HHHHHHHHCCCceEEEeccCCCC---------CC----Cc--ccccCEEEEECCCCCCCCC
Confidence 35788888765555444 46788889999998886543300 01 12 246999999998543221
Q ss_pred hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 238 ~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
..-...+.+||+++.+.++++.+||-|.. +||++
T Consensus 69 ~~wi~~~~~~i~~~~~~~~PvLGIC~G~Q-lla~a 102 (239)
T PRK06490 69 DDFIRREIDWISVPLKENKPFLGICLGAQ-MLARH 102 (239)
T ss_pred chHHHHHHHHHHHHHHCCCCEEEECHhHH-HHHHH
Confidence 11124578999999999999999999999 89885
No 83
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=97.80 E-value=0.00014 Score=75.35 Aligned_cols=96 Identities=11% Similarity=0.188 Sum_probs=70.7
Q ss_pred CCCeEEEEecCCCc-hhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHH-
Q 023800 159 NSPQILVPIANGSE-EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ- 236 (277)
Q Consensus 159 ~~~kV~ill~~g~~-~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~- 236 (277)
..+||+|+.+||.+ +.|. ..+|..+|+++..+..+.- ..+ +. ...+|++|++|||+..-+
T Consensus 1034 ~~pkv~il~~pG~N~~~e~---~~Af~~aG~~~~~v~~~dl--~~~--------~~-----~l~~~~~l~~~GGFS~gD~ 1095 (1290)
T PRK05297 1034 ARPKVAILREQGVNSHVEM---AAAFDRAGFDAIDVHMSDL--LAG--------RV-----TLEDFKGLVACGGFSYGDV 1095 (1290)
T ss_pred CCCeEEEEECCCCCCHHHH---HHHHHHcCCCeEEEEeecC--cCC--------CC-----ChhhCcEEEECCccCCccc
Confidence 35799999999975 4444 4566689999888775431 011 01 135699999999864222
Q ss_pred ---------hhhcCHHHHHHHHHHH-HcCCcEEEEchhhHHhhhhCC
Q 023800 237 ---------AFAKSKKLVNMLKKQK-ESNRPYGAICASPALVLEPHG 273 (277)
Q Consensus 237 ---------~~~~~~~~~~~l~~~~-~~~~~i~aiC~G~~~lLa~aG 273 (277)
.+..|+.+.+.+++|+ ++++.+.+||+|-. +|.++|
T Consensus 1096 lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ-~L~~lg 1141 (1290)
T PRK05297 1096 LGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQ-MMSNLK 1141 (1290)
T ss_pred chHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHH-HHHHhC
Confidence 2345688999999977 78999999999999 899998
No 84
>PHA03366 FGAM-synthase; Provisional
Probab=97.80 E-value=0.00016 Score=74.85 Aligned_cols=98 Identities=10% Similarity=0.085 Sum_probs=73.2
Q ss_pred CCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHH--
Q 023800 159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ-- 236 (277)
Q Consensus 159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~-- 236 (277)
..+||+|+.+||.+-.. ....+|..+|+++..|..+.- ..... .++|+.|++|||+..-+
T Consensus 1027 ~~prVaIl~~pG~N~~~--e~~~Af~~aGf~~~~v~~~dL-----------~~~~~-----l~~f~glv~~GGFS~gD~l 1088 (1304)
T PHA03366 1027 KRHRVAVLLLPGCPGPH--ALLAAFTNAGFDPYPVSIEEL-----------KDGTF-----LDEFSGLVIGGSSGAEDSY 1088 (1304)
T ss_pred CCCeEEEEECCCCCCHH--HHHHHHHHcCCceEEEEeecC-----------CCCCc-----cccceEEEEcCCCCCcccc
Confidence 45799999999976332 334566679999888875431 00011 24689999999875322
Q ss_pred --------hhhcCHHHHHHHHHHH-HcCCcEEEEch-hhHHhhhhCCCC
Q 023800 237 --------AFAKSKKLVNMLKKQK-ESNRPYGAICA-SPALVLEPHGLL 275 (277)
Q Consensus 237 --------~~~~~~~~~~~l~~~~-~~~~~i~aiC~-G~~~lLa~aGlL 275 (277)
.+..|+.+.+.+++|+ ++++.+.+||+ |-. +|++.|+|
T Consensus 1089 ~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q-~L~~lgll 1136 (1304)
T PHA03366 1089 TGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQ-ILFALKAV 1136 (1304)
T ss_pred cHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHH-HHHHcCCc
Confidence 2356889999999999 56999999999 999 89999998
No 85
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=97.78 E-value=0.00014 Score=59.91 Aligned_cols=87 Identities=18% Similarity=0.339 Sum_probs=61.0
Q ss_pred CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhc
Q 023800 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK 240 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~ 240 (277)
+||+|+ |..+.... ...+.|++.|++++++..+.. ..+++ +.||.|+|.||...+. .
T Consensus 2 ~~ilii--d~~dsf~~-~i~~~l~~~g~~~~v~~~~~~---------------~~~~l--~~~d~iIi~gGp~~~~---~ 58 (190)
T PRK06895 2 TKLLII--NNHDSFTF-NLVDLIRKLGVPMQVVNVEDL---------------DLDEV--ENFSHILISPGPDVPR---A 58 (190)
T ss_pred cEEEEE--eCCCchHH-HHHHHHHHcCCcEEEEECCcc---------------ChhHh--ccCCEEEECCCCCChH---H
Confidence 455554 54444444 489999999999999876432 12222 3589999888754332 2
Q ss_pred CHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 241 ~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
.+.+.++|++ ++.++++.+||-|.. +|+.+
T Consensus 59 ~~~~~~~i~~-~~~~~PiLGIClG~Q-lla~~ 88 (190)
T PRK06895 59 YPQLFAMLER-YHQHKSILGVCLGHQ-TLCEF 88 (190)
T ss_pred hhHHHHHHHH-hcCCCCEEEEcHHHH-HHHHH
Confidence 4567788876 778999999999999 89874
No 86
>PRK05665 amidotransferase; Provisional
Probab=97.76 E-value=0.00025 Score=60.47 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=39.9
Q ss_pred CCccEEEEcCCcchHHh-hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 221 LSYDLIVLPGGLGGAQA-FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 221 ~~~D~livpGG~~~~~~-~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
++||.+||.||..+... ..--.++.+||++.+++++++.+||-|.. +||++
T Consensus 56 ~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQ-lla~A 107 (240)
T PRK05665 56 EKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQ-LLALL 107 (240)
T ss_pred ccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHH-HHHHH
Confidence 46999999998532211 11125788999999999999999999999 89874
No 87
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=97.75 E-value=0.00059 Score=61.96 Aligned_cols=143 Identities=17% Similarity=0.171 Sum_probs=91.1
Q ss_pred CeEcCCCCC---CHHHHHHHHHHHhcChhHHHHHhhcccccccCCCchhhcccCcccccc-CCCCeEEEEecCCCchhhH
Q 023800 101 KVVTTRGPG---TPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTF-DNSPQILVPIANGSEEMEA 176 (277)
Q Consensus 101 ~~iT~~g~~---~~~~~a~~li~~l~g~~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~kV~ill~~g~~~~e~ 176 (277)
.+|++.--. +.++-+-.++++...-+.-.++++.-. +.+. .+.+..... ....||+|.. |..-..=+
T Consensus 190 GLV~a~E~~~~~~~~~~~a~~v~~~vDld~l~~ia~~~~--~~~~------~~~~~~~~~~~~~~rIAVA~-D~AF~FyY 260 (451)
T COG1797 190 GLVPASERLELEAKLEALAEVVEKHVDLDALLEIASSAG--PLEP------DLSPEPERGNPLGVRIAVAR-DAAFNFYY 260 (451)
T ss_pred ccccchhhhhHHHHHHHHHHHHHhhCCHHHHHHHHhccC--CCCC------CccccccccCCcCceEEEEe-cchhcccc
Confidence 366665432 345555566666666555555553211 0000 001111111 1226888864 43333334
Q ss_pred HHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcch--HHhhhcCHHHHHHHHHHHHc
Q 023800 177 VIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG--AQAFAKSKKLVNMLKKQKES 254 (277)
Q Consensus 177 ~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~--~~~~~~~~~~~~~l~~~~~~ 254 (277)
-.-++.|+..|.++..+||-.+ +++ |++.|+|++|||++- ...+..++.+.++|+++.+.
T Consensus 261 ~~nl~~Lr~~GAelv~FSPL~D-----------------~~l-P~~~D~vYlgGGYPElfA~~L~~n~~~~~~i~~~~~~ 322 (451)
T COG1797 261 PENLELLREAGAELVFFSPLAD-----------------EEL-PPDVDAVYLGGGYPELFAEELSANESMRRAIKAFAAA 322 (451)
T ss_pred HHHHHHHHHCCCEEEEeCCcCC-----------------CCC-CCCCCEEEeCCCChHHHHHHHhhCHHHHHHHHHHHHc
Confidence 5567999999999999998654 222 235899999999852 33467889999999999999
Q ss_pred CCcEEEEchhhHHhhhh
Q 023800 255 NRPYGAICASPALVLEP 271 (277)
Q Consensus 255 ~~~i~aiC~G~~~lLa~ 271 (277)
|++|.+=|.|-. .|.+
T Consensus 323 G~piyaECGGlM-YL~~ 338 (451)
T COG1797 323 GKPIYAECGGLM-YLGE 338 (451)
T ss_pred CCceEEecccce-eehh
Confidence 999999999998 6765
No 88
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=97.72 E-value=0.00021 Score=59.69 Aligned_cols=86 Identities=17% Similarity=0.182 Sum_probs=60.8
Q ss_pred CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCC-cch--HHh
Q 023800 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGG-LGG--AQA 237 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG-~~~--~~~ 237 (277)
+||+|+-+..-+..+ ...+|+..|+++.+++.+ +++ .++|.||+||+ ... ...
T Consensus 2 ~~v~iid~~~GN~~s---l~~al~~~g~~v~vv~~~-------------------~~l--~~~d~iIlPG~g~~~~~~~~ 57 (210)
T CHL00188 2 MKIGIIDYSMGNLHS---VSRAIQQAGQQPCIINSE-------------------SEL--AQVHALVLPGVGSFDLAMKK 57 (210)
T ss_pred cEEEEEEcCCccHHH---HHHHHHHcCCcEEEEcCH-------------------HHh--hhCCEEEECCCCchHHHHHH
Confidence 689999888555544 467777889988877421 122 24799999994 311 111
Q ss_pred hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 238 ~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
+. ...+.+.|+++.++++++.+||-|.. +|++.
T Consensus 58 l~-~~gl~~~i~~~~~~~~pvlGIClG~Q-ll~~~ 90 (210)
T CHL00188 58 LE-KKGLITPIKKWIAEGNPFIGICLGLH-LLFET 90 (210)
T ss_pred HH-HCCHHHHHHHHHHcCCCEEEECHHHH-HHhhc
Confidence 22 23566788888899999999999999 89875
No 89
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=97.70 E-value=0.00028 Score=72.74 Aligned_cols=98 Identities=11% Similarity=0.114 Sum_probs=72.9
Q ss_pred CCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchH---
Q 023800 159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA--- 235 (277)
Q Consensus 159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~--- 235 (277)
..+||+|+.+||.+-.. ....+|..+|+++..|..+.- .. ...+ ++|+.|++|||+...
T Consensus 928 ~~p~VaIl~~pG~N~~~--e~~~Af~~aGf~~~~v~~~dl--~~---------~~~l-----~~f~glv~~Ggfsy~D~l 989 (1202)
T TIGR01739 928 PRHQVAVLLLPGQSVPH--GLLAALTNAGFDPRIVSITEL--KK---------TDFL-----DTFSGLIIGGASGTLDSE 989 (1202)
T ss_pred CCCeEEEEeCCCCCCHH--HHHHHHHHcCCceEEEEeccC--CC---------CCch-----hheEEEEEcCcCCCCccc
Confidence 35789999999976432 344667779999888876541 00 0111 368999999987522
Q ss_pred -------HhhhcCHHHHHHHHHHH-HcCCcEEEEch-hhHHhhhhCCCC
Q 023800 236 -------QAFAKSKKLVNMLKKQK-ESNRPYGAICA-SPALVLEPHGLL 275 (277)
Q Consensus 236 -------~~~~~~~~~~~~l~~~~-~~~~~i~aiC~-G~~~lLa~aGlL 275 (277)
..+..++.+.+.+++|+ +.++.+.+||+ |-. +|.+.|+|
T Consensus 990 gsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q-~L~~lg~l 1037 (1202)
T TIGR01739 990 VGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQ-LLLALNIV 1037 (1202)
T ss_pred hHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHH-HHHHcCCC
Confidence 22455789999999999 56999999999 999 89999997
No 90
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=97.69 E-value=6.3e-05 Score=60.03 Aligned_cols=51 Identities=24% Similarity=0.338 Sum_probs=42.8
Q ss_pred cCCccEEEEcCCcchHH--hhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800 220 KLSYDLIVLPGGLGGAQ--AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (277)
Q Consensus 220 ~~~~D~livpGG~~~~~--~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~ 271 (277)
++++|+|++|||.+... .+..+..+.+.|+++.++|.+|.++|.|-. +|.+
T Consensus 5 ~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~-~Lg~ 57 (158)
T PF07685_consen 5 PPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQ-YLGE 57 (158)
T ss_pred CCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHH-HHHH
Confidence 56899999999975333 245577899999999999999999999999 7876
No 91
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.66 E-value=0.00029 Score=58.91 Aligned_cols=88 Identities=24% Similarity=0.256 Sum_probs=56.4
Q ss_pred CCeEEEEecCCCchhhHHHHHHHHHhCCCeE--EEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh
Q 023800 160 SPQILVPIANGSEEMEAVIIIDILRRAKANV--VVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA 237 (277)
Q Consensus 160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v--~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~ 237 (277)
++||+|+=|..-+..++ ..+|++.|+++ .+++ ..+++ +++|.|||||+......
T Consensus 1 ~~~~~iid~g~gn~~s~---~~al~~~g~~~~v~~~~-------------------~~~~l--~~~d~lIlpG~~~~~~~ 56 (209)
T PRK13146 1 MMTVAIIDYGSGNLRSA---AKALERAGAGADVVVTA-------------------DPDAV--AAADRVVLPGVGAFADC 56 (209)
T ss_pred CCeEEEEECCCChHHHH---HHHHHHcCCCccEEEEC-------------------CHHHh--cCCCEEEECCCCcHHHH
Confidence 36899988776666554 57777888743 3321 11333 47899999996432221
Q ss_pred ---hhcCHHHHH-HHHHHHHcCCcEEEEchhhHHhhhhCC
Q 023800 238 ---FAKSKKLVN-MLKKQKESNRPYGAICASPALVLEPHG 273 (277)
Q Consensus 238 ---~~~~~~~~~-~l~~~~~~~~~i~aiC~G~~~lLa~aG 273 (277)
+... .+.. +++...+.++++.+||.|.. +|+++|
T Consensus 57 ~~~l~~~-~~~~~~~~~~~~~~~PvlGiC~G~q-~l~~~~ 94 (209)
T PRK13146 57 MRGLRAV-GLGEAVIEAVLAAGRPFLGICVGMQ-LLFERG 94 (209)
T ss_pred HHHHHHC-CcHHHHHHHHHhCCCcEEEECHHHH-HHhhcc
Confidence 1211 2333 44445578999999999999 899984
No 92
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=97.59 E-value=0.00036 Score=50.47 Aligned_cols=88 Identities=24% Similarity=0.324 Sum_probs=61.9
Q ss_pred chhhHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchhccccChHHHHHHHHHHhCCCEEE
Q 023800 2 EAVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLKESEVLESIVKKQASDGRLYA 78 (277)
Q Consensus 2 E~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~ 78 (277)
++..+.+.|+++++++.+++..+ ..... .....+.+.. ||.........++.++++++++.+++++++
T Consensus 13 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~~--------~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~ 83 (115)
T cd01653 13 ELASPLDALREAGAEVDVVSPDG-GPVES--------DVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPIL 83 (115)
T ss_pred hhHHHHHHHHHCCCeEEEEcCCC-Cceec--------cCChhccCEEEECCCCCchhhhccCHHHHHHHHHHHHcCCEEE
Confidence 45678999999999999999987 34433 1112222211 543222222247899999999999999999
Q ss_pred EEchhHHHHHHHcCCCCCCCCCCeEcCCCCCCHH
Q 023800 79 AICVFLAVALGSWGLLKGLKDGKVVTTRGPGTPM 112 (277)
Q Consensus 79 aiC~g~~~~La~aGll~g~~dg~~iT~~g~~~~~ 112 (277)
++|.|++ +| ++|.++..+..
T Consensus 84 ~~c~g~~-~l-------------~~~~~~~~~~~ 103 (115)
T cd01653 84 GICLGAQ-LL-------------VLGVQFHPEAI 103 (115)
T ss_pred EECchhH-hH-------------eeeccCChhhh
Confidence 9999999 77 77777766654
No 93
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=97.58 E-value=0.00048 Score=64.25 Aligned_cols=91 Identities=19% Similarity=0.189 Sum_probs=66.8
Q ss_pred CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcch--HHhh
Q 023800 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG--AQAF 238 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~--~~~~ 238 (277)
.+|+++-.+-|+..= ..=++.|+..|.++..+++-.+ +++ +++|+|++|||... ...+
T Consensus 245 ~~Iava~d~afnFy~-~~~~~~L~~~g~~~~~~~~~~d-----------------~~l--~~~d~l~ipGG~~~~~~~~l 304 (449)
T TIGR00379 245 VRIAVAQDQAFNFYY-QDNLDALTHNAAELVPFSPLED-----------------TEL--PDVDAVYIGGGFPELFAEEL 304 (449)
T ss_pred cEEEEEechhhceeH-HHHHHHHHHCCCEEEEECCccC-----------------CCC--CCCCEEEeCCcHHHHHHHHH
Confidence 589998776554311 3344677788999988887432 112 25899999999742 2234
Q ss_pred hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
..+..+.+.|+++.++|.+|.++|.|-. +|++.
T Consensus 305 ~~~~~~~~~i~~~~~~G~pv~g~CgG~~-~L~~~ 337 (449)
T TIGR00379 305 SQNQALRDSIKTFIHQGLPIYGECGGLM-YLSQS 337 (449)
T ss_pred HhhhHHHHHHHHHHHcCCCEEEEcHHHH-HHHhh
Confidence 5577899999999999999999999999 78763
No 94
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=97.57 E-value=0.00024 Score=58.75 Aligned_cols=75 Identities=28% Similarity=0.389 Sum_probs=54.6
Q ss_pred HHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh--hhcCHHHHHHHHHHHH
Q 023800 176 AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA--FAKSKKLVNMLKKQKE 253 (277)
Q Consensus 176 ~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~--~~~~~~~~~~l~~~~~ 253 (277)
+....+.|++.|+++.++... .++ +++|.|++||+...... ....+.+.++++++.+
T Consensus 11 ~~~~~~~l~~~g~~v~v~~~~-------------------~~l--~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~ 69 (198)
T cd01748 11 LRSVANALERLGAEVIITSDP-------------------EEI--LSADKLILPGVGAFGDAMANLRERGLIEALKEAIA 69 (198)
T ss_pred HHHHHHHHHHCCCeEEEEcCh-------------------HHh--ccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHH
Confidence 345568888899988887521 122 35899999996322221 1123457899999999
Q ss_pred cCCcEEEEchhhHHhhhhC
Q 023800 254 SNRPYGAICASPALVLEPH 272 (277)
Q Consensus 254 ~~~~i~aiC~G~~~lLa~a 272 (277)
++++|.+||.|.. +|+++
T Consensus 70 ~~~pilGiC~G~q-~l~~~ 87 (198)
T cd01748 70 SGKPFLGICLGMQ-LLFES 87 (198)
T ss_pred CCCcEEEECHHHH-Hhccc
Confidence 9999999999999 89987
No 95
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=97.52 E-value=0.00024 Score=58.80 Aligned_cols=73 Identities=23% Similarity=0.257 Sum_probs=53.1
Q ss_pred HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccc--hhccccChHHHHHHHHHHhCCCEEEEE
Q 023800 6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPG--ATNLKESEVLESIVKKQASDGRLYAAI 80 (277)
Q Consensus 6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~--~~~~~~~~~~~~~l~~~~~~g~~i~ai 80 (277)
-++.|++.|+++.++|+..+. .+.+++.. ||.+. +..++++..+.+.|+++.++|++|.+|
T Consensus 16 ~~~~l~~~G~~v~~~s~~~~~--------------~l~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgI 81 (198)
T cd03130 16 NLELLEAAGAELVPFSPLKDE--------------ELPDADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAE 81 (198)
T ss_pred HHHHHHHCCCEEEEECCCCCC--------------CCCCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEE
Confidence 467889999999999974211 11221111 66422 345667778999999999999999999
Q ss_pred chhHHHHHHHcCC
Q 023800 81 CVFLAVALGSWGL 93 (277)
Q Consensus 81 C~g~~~~La~aGl 93 (277)
|.|.+ +|++.-.
T Consensus 82 CgG~q-lL~~~~~ 93 (198)
T cd03130 82 CGGLM-YLGESLD 93 (198)
T ss_pred cccHH-HHHHHhh
Confidence 99999 8988654
No 96
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=97.51 E-value=0.00045 Score=56.69 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=53.8
Q ss_pred HHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcC
Q 023800 176 AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESN 255 (277)
Q Consensus 176 ~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~ 255 (277)
.....++|++.|++++++..+.. .+++..-++|.|++|||.... .+.....|++...+.+
T Consensus 11 ~~~l~~~l~~~g~~~~~~~~~~~----------------~~~~~~~~~~glii~Gg~~~~----~~~~~~~~i~~~~~~~ 70 (188)
T TIGR00888 11 TQLIARRLRELGVYSELVPNTTP----------------LEEIREKNPKGIILSGGPSSV----YAENAPRADEKIFELG 70 (188)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCC----------------HHHHhhcCCCEEEECCCCCCc----CcCCchHHHHHHHhCC
Confidence 44566888889998888765421 222221236799999985321 2234567889889999
Q ss_pred CcEEEEchhhHHhhhhC
Q 023800 256 RPYGAICASPALVLEPH 272 (277)
Q Consensus 256 ~~i~aiC~G~~~lLa~a 272 (277)
++|.+||.|.. +|+.+
T Consensus 71 ~PilGIC~G~Q-ll~~~ 86 (188)
T TIGR00888 71 VPVLGICYGMQ-LMAKQ 86 (188)
T ss_pred CCEEEECHHHH-HHHHh
Confidence 99999999999 89874
No 97
>PRK09065 glutamine amidotransferase; Provisional
Probab=97.49 E-value=0.00083 Score=57.25 Aligned_cols=96 Identities=15% Similarity=0.158 Sum_probs=60.2
Q ss_pred CCeEEEEecCCCch--h-hHHHHHHHHH----hCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCc
Q 023800 160 SPQILVPIANGSEE--M-EAVIIIDILR----RAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGL 232 (277)
Q Consensus 160 ~~kV~ill~~g~~~--~-e~~~~~~~l~----~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~ 232 (277)
|+|++||..+.-.+ . ......+.|. ..+.+++++.+..+ ..+.+ ..+||.|||.||.
T Consensus 1 ~~~i~iL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~p~--~~~~dgvvi~Gg~ 64 (237)
T PRK09065 1 VKPLLIIQTGTPPPSIRARYGDFPHWIRVALGLAEQPVVVVRVFAG--------------EPLPA--PDDFAGVIITGSW 64 (237)
T ss_pred CCcEEEEECCCCChhHHhhcCCHHHHHHHHhccCCceEEEEeccCC--------------CCCCC--hhhcCEEEEeCCC
Confidence 35688887654221 1 1222344443 45777777655433 11122 2469999999985
Q ss_pred chHHh-hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 233 GGAQA-FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 233 ~~~~~-~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
..... ..-...+.+||+++.+++++|.+||-|.. +|+.+
T Consensus 65 ~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Q-lla~a 104 (237)
T PRK09065 65 AMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQ-LLAHA 104 (237)
T ss_pred cccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHH-HHHHH
Confidence 32111 11125678999999999999999999999 89874
No 98
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=97.47 E-value=0.00079 Score=56.46 Aligned_cols=79 Identities=13% Similarity=0.226 Sum_probs=56.4
Q ss_pred HHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCC
Q 023800 177 VIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNR 256 (277)
Q Consensus 177 ~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~ 256 (277)
....+.++..|+++.++..+.. .. ....+. ...||.|||.||...+. +.....+|++++.++++
T Consensus 14 ~~~~~~l~~~G~~~~~~~~~~~-~~-----------~~~~~~-~~~~dgliisGGp~~~~---~~~~~~~~i~~~~~~~~ 77 (214)
T PRK07765 14 FNLVQYLGQLGVEAEVWRNDDP-RL-----------ADEAAV-AAQFDGVLLSPGPGTPE---RAGASIDMVRACAAAGT 77 (214)
T ss_pred HHHHHHHHHcCCcEEEEECCCc-CH-----------HHHHHh-hcCCCEEEECCCCCChh---hcchHHHHHHHHHhCCC
Confidence 3466888999999999876532 00 111211 24699999999864333 23455689999999999
Q ss_pred cEEEEchhhHHhhhhC
Q 023800 257 PYGAICASPALVLEPH 272 (277)
Q Consensus 257 ~i~aiC~G~~~lLa~a 272 (277)
+|.+||-|.. +|+.+
T Consensus 78 PiLGIC~G~Q-lla~a 92 (214)
T PRK07765 78 PLLGVCLGHQ-AIGVA 92 (214)
T ss_pred CEEEEccCHH-HHHHH
Confidence 9999999999 88763
No 99
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=97.42 E-value=0.00077 Score=54.09 Aligned_cols=85 Identities=24% Similarity=0.265 Sum_probs=59.9
Q ss_pred CeEEEEecCCCchhhHHHHHHHHHhCC-CeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcch-HHhh
Q 023800 161 PQILVPIANGSEEMEAVIIIDILRRAK-ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG-AQAF 238 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~~~~~~~l~~a~-~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~-~~~~ 238 (277)
+||+++.+.|--. .=++++++++ .++..+ ...+++ +..|.||||||... ...+
T Consensus 1 m~IGVLalQG~v~----EH~~~l~~~~~~e~~~V-------------------k~~~dL--~~~d~LIiPGGESTTi~rL 55 (194)
T COG0311 1 MKIGVLALQGAVE----EHLEALEKAGGAEVVEV-------------------KRPEDL--EGVDGLIIPGGESTTIGRL 55 (194)
T ss_pred CeEEEEEecccHH----HHHHHHHhhcCCceEEE-------------------cCHHHh--ccCcEEEecCccHHHHHHH
Confidence 5799999887432 3346667775 333222 122343 45799999999632 3334
Q ss_pred hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800 239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (277)
Q Consensus 239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~ 271 (277)
...-.+.+-|+++..+|+++.+.|.|.. +||+
T Consensus 56 ~~~~gl~e~l~~~~~~G~Pv~GTCAGlI-lLak 87 (194)
T COG0311 56 LKRYGLLEPLREFIADGLPVFGTCAGLI-LLAK 87 (194)
T ss_pred HHHcCcHHHHHHHHHcCCceEEechhhh-hhhh
Confidence 5556788899999999999999999999 8996
No 100
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=97.42 E-value=0.001 Score=54.36 Aligned_cols=88 Identities=24% Similarity=0.324 Sum_probs=61.7
Q ss_pred CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcC-Ccc--hHH
Q 023800 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPG-GLG--GAQ 236 (277)
Q Consensus 160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpG-G~~--~~~ 236 (277)
+++|+|+=|.--++ .....+|+++|+++.+.+. . +++ ...|.||+|| |.. .+.
T Consensus 1 m~~i~IIDyg~GNL---~Sv~~Aler~G~~~~vs~d-~------------------~~i--~~AD~liLPGVGaf~~am~ 56 (204)
T COG0118 1 MMMVAIIDYGSGNL---RSVKKALERLGAEVVVSRD-P------------------EEI--LKADKLILPGVGAFGAAMA 56 (204)
T ss_pred CCEEEEEEcCcchH---HHHHHHHHHcCCeeEEecC-H------------------HHH--hhCCEEEecCCCCHHHHHH
Confidence 36788887665554 4556777788877755432 1 222 3579999999 532 233
Q ss_pred hhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCC
Q 023800 237 AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHG 273 (277)
Q Consensus 237 ~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aG 273 (277)
.+... .+.+.|++..+.++++.+||-|.. +|.+-+
T Consensus 57 ~L~~~-gl~~~i~~~~~~~kP~LGIClGMQ-lLfe~S 91 (204)
T COG0118 57 NLRER-GLIEAIKEAVESGKPFLGICLGMQ-LLFERS 91 (204)
T ss_pred HHHhc-chHHHHHHHHhcCCCEEEEeHhHH-hhhhcc
Confidence 33333 789999999999999999999999 787654
No 101
>PRK00784 cobyric acid synthase; Provisional
Probab=97.39 E-value=0.0006 Score=64.28 Aligned_cols=87 Identities=17% Similarity=0.226 Sum_probs=63.4
Q ss_pred CeEEEEecCCCchhhHHHHHHHHHh-CCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh--
Q 023800 161 PQILVPIANGSEEMEAVIIIDILRR-AKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA-- 237 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~~~~~~~l~~-a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~-- 237 (277)
.||+|+-+|...-. .=++.|+. +|+++.++++.. ++ +++|.|++|||......
T Consensus 252 ~~i~v~~~~~a~~f---~nl~~l~~~~g~~v~~~s~~~-------------------~l--~~~d~lilpGg~~~~~~~~ 307 (488)
T PRK00784 252 LRIAVIRLPRISNF---TDFDPLRAEPGVDVRYVRPGE-------------------PL--PDADLVILPGSKNTIADLA 307 (488)
T ss_pred eEEEEEeCCCcCCc---cChHHHhhcCCCeEEEECCcc-------------------cc--ccCCEEEECCccchHHHHH
Confidence 58999987742222 44577776 888888887522 12 25799999998643222
Q ss_pred hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 238 ~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
+..+..+.+.|+++.++|++|.++|.|-. +|++.
T Consensus 308 ~~~~~~l~~~i~~~~~~g~pilg~C~G~~-~L~~~ 341 (488)
T PRK00784 308 WLRESGWDEAIRAHARRGGPVLGICGGYQ-MLGRR 341 (488)
T ss_pred HHHHcCHHHHHHHHHHcCCeEEEECHHHH-HHhhh
Confidence 23455688999999999999999999999 89874
No 102
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=97.38 E-value=0.00089 Score=54.94 Aligned_cols=87 Identities=10% Similarity=0.172 Sum_probs=59.8
Q ss_pred EEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHH
Q 023800 165 VPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKL 244 (277)
Q Consensus 165 ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~ 244 (277)
|++.|+++.... -..+.|++.|.++.++..+.. +++++...++|.||+-||...+.+ ....
T Consensus 2 il~idn~Dsft~-nl~~~l~~~g~~v~v~~~~~~---------------~~~~~~~~~~d~iils~GPg~p~~---~~~~ 62 (187)
T PRK08007 2 ILLIDNYDSFTW-NLYQYFCELGADVLVKRNDAL---------------TLADIDALKPQKIVISPGPCTPDE---AGIS 62 (187)
T ss_pred EEEEECCCccHH-HHHHHHHHCCCcEEEEeCCCC---------------CHHHHHhcCCCEEEEcCCCCChHH---CCcc
Confidence 455666655553 467788888999988865421 233333346899999998655543 2334
Q ss_pred HHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 245 VNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 245 ~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
..+++. ++.++||.+||-|.. +||.+
T Consensus 63 ~~~~~~-~~~~~PiLGIClG~Q-~la~a 88 (187)
T PRK08007 63 LDVIRH-YAGRLPILGVCLGHQ-AMAQA 88 (187)
T ss_pred HHHHHH-hcCCCCEEEECHHHH-HHHHH
Confidence 556665 568899999999999 89874
No 103
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=97.31 E-value=0.00038 Score=57.13 Aligned_cols=79 Identities=23% Similarity=0.329 Sum_probs=57.9
Q ss_pred HHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcC
Q 023800 176 AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESN 255 (277)
Q Consensus 176 ~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~ 255 (277)
.......+++.|.+++++..+.. .....+ +..+||.|+|+||..... +.+....+++++.+++
T Consensus 10 ~~~l~~~l~~~~~~~~v~~~~~~-------------~~~~~~-~~~~~d~iii~Gg~~~~~---d~~~~~~~i~~~~~~~ 72 (192)
T PF00117_consen 10 THSLVRALRELGIDVEVVRVDSD-------------FEEPLE-DLDDYDGIIISGGPGSPY---DIEGLIELIREARERK 72 (192)
T ss_dssp HHHHHHHHHHTTEEEEEEETTGG-------------HHHHHH-HTTTSSEEEEECESSSTT---SHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCeEEEEECCCc-------------hhhhhh-hhcCCCEEEECCcCCccc---cccccccccccccccc
Confidence 34567888888988888876532 001111 246799999999864332 2577888899999999
Q ss_pred CcEEEEchhhHHhhhhC
Q 023800 256 RPYGAICASPALVLEPH 272 (277)
Q Consensus 256 ~~i~aiC~G~~~lLa~a 272 (277)
+++.+||-|.. +||.+
T Consensus 73 ~PilGIC~G~Q-~la~~ 88 (192)
T PF00117_consen 73 IPILGICLGHQ-ILAHA 88 (192)
T ss_dssp SEEEEETHHHH-HHHHH
T ss_pred eEEEEEeehhh-hhHHh
Confidence 99999999999 88863
No 104
>PRK05670 anthranilate synthase component II; Provisional
Probab=97.27 E-value=0.0017 Score=53.33 Aligned_cols=86 Identities=17% Similarity=0.212 Sum_probs=56.7
Q ss_pred EecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHH
Q 023800 166 PIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLV 245 (277)
Q Consensus 166 ll~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~ 245 (277)
++.|.. ++=.....+.|++.|++++++..+.. . ...+++ .++|.||+.||..++.+ .....
T Consensus 3 liid~~-d~f~~~i~~~l~~~g~~~~v~~~~~~-~-----------~~~~~~---~~~dglIlsgGpg~~~d---~~~~~ 63 (189)
T PRK05670 3 LLIDNY-DSFTYNLVQYLGELGAEVVVYRNDEI-T-----------LEEIEA---LNPDAIVLSPGPGTPAE---AGISL 63 (189)
T ss_pred EEEECC-CchHHHHHHHHHHCCCcEEEEECCCC-C-----------HHHHHh---CCCCEEEEcCCCCChHH---cchHH
Confidence 344433 33345678889999999999877532 0 011222 34899999887644432 23455
Q ss_pred HHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 246 NMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 246 ~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
.++++ ...+++|.+||-|.. +|+.+
T Consensus 64 ~~l~~-~~~~~PvLGIClG~Q-lla~a 88 (189)
T PRK05670 64 ELIRE-FAGKVPILGVCLGHQ-AIGEA 88 (189)
T ss_pred HHHHH-hcCCCCEEEECHHHH-HHHHH
Confidence 67765 467799999999999 88864
No 105
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=97.27 E-value=0.0011 Score=54.54 Aligned_cols=81 Identities=20% Similarity=0.231 Sum_probs=53.9
Q ss_pred HHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh--------------hhcCH
Q 023800 177 VIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA--------------FAKSK 242 (277)
Q Consensus 177 ~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~--------------~~~~~ 242 (277)
......|+..|..+.++..... . ..+... ...+|.|++|||...... ...+.
T Consensus 22 ~~~~~~l~~~G~~~~iv~~~~~-~------------~~~~~~-l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~ 87 (189)
T cd01745 22 QYYVDAVRKAGGLPVLLPPVDD-E------------EDLEQY-LELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDA 87 (189)
T ss_pred HHHHHHHHHCCCEEEEeCCCCC-h------------HHHHHH-HhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHH
Confidence 4567788888988877755432 0 111111 246899999998532111 11122
Q ss_pred HHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 243 KLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 243 ~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
...++++++.+.+++|.+||.|.. +|+.+
T Consensus 88 ~~~~~~~~~~~~~~PilgiC~G~Q-~l~~~ 116 (189)
T cd01745 88 FELALLRAALERGKPILGICRGMQ-LLNVA 116 (189)
T ss_pred HHHHHHHHHHHCCCCEEEEcchHH-HHHHH
Confidence 447889999999999999999999 78763
No 106
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=97.26 E-value=0.0013 Score=54.34 Aligned_cols=75 Identities=24% Similarity=0.229 Sum_probs=50.0
Q ss_pred HHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHH--HHHHHHHHHH
Q 023800 176 AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKK--LVNMLKKQKE 253 (277)
Q Consensus 176 ~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~--~~~~l~~~~~ 253 (277)
+....+.|+..|.++.++..+ .++ +++|.|++||+....+.....+. ...+++++++
T Consensus 11 ~~~l~~~l~~~g~~v~v~~~~-------------------~~l--~~~d~lii~G~~~~~~~~~~l~~~~~~~l~~~~~~ 69 (196)
T TIGR01855 11 LGSVKRALKRVGAEPVVVKDS-------------------KEA--ELADKLILPGVGAFGAAMARLRENGLDLFVELVVR 69 (196)
T ss_pred HHHHHHHHHHCCCcEEEEcCH-------------------HHh--ccCCEEEECCCCCHHHHHHHHHHcCcHHHHHHHHh
Confidence 456677788888888777521 112 36899999995321221111111 3344477889
Q ss_pred cCCcEEEEchhhHHhhhhC
Q 023800 254 SNRPYGAICASPALVLEPH 272 (277)
Q Consensus 254 ~~~~i~aiC~G~~~lLa~a 272 (277)
.+++|.+||.|.. +|+++
T Consensus 70 ~~~pvlGiC~G~Q-ll~~~ 87 (196)
T TIGR01855 70 LGKPVLGICLGMQ-LLFER 87 (196)
T ss_pred CCCCEEEECHHHH-Hhhhc
Confidence 9999999999999 89997
No 107
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=97.24 E-value=0.00027 Score=57.10 Aligned_cols=50 Identities=22% Similarity=0.349 Sum_probs=37.7
Q ss_pred CCccEEEEcCCcch-HHhhhcCHHHHHHHHHHHHcC-CcEEEEchhhHHhhhh
Q 023800 221 LSYDLIVLPGGLGG-AQAFAKSKKLVNMLKKQKESN-RPYGAICASPALVLEP 271 (277)
Q Consensus 221 ~~~D~livpGG~~~-~~~~~~~~~~~~~l~~~~~~~-~~i~aiC~G~~~lLa~ 271 (277)
++.|.||+|||... ...+.....+.+-||++.+.| ++|.+.|.|.. +||+
T Consensus 32 ~~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlI-lLa~ 83 (188)
T PF01174_consen 32 EGLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLI-LLAK 83 (188)
T ss_dssp TT-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHH-HHEE
T ss_pred ccCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHH-Hhhh
Confidence 35799999999632 233455568999999999998 99999999999 8987
No 108
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=97.24 E-value=0.0018 Score=53.09 Aligned_cols=86 Identities=14% Similarity=0.177 Sum_probs=56.5
Q ss_pred EecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHH
Q 023800 166 PIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLV 245 (277)
Q Consensus 166 ll~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~ 245 (277)
++.|..+... ....+.|+..|+++.++..+.. .++++...++|.||+.||...+.+ .....
T Consensus 3 l~id~~dsft-~~~~~~l~~~g~~v~v~~~~~~---------------~~~~~~~~~~d~iilsgGpg~p~~---~~~~~ 63 (188)
T TIGR00566 3 LMIDNYDSFT-YNLVQYFCELGAEVVVKRNDSL---------------TLQEIEALLPLLIVISPGPCTPNE---AGISL 63 (188)
T ss_pred EEEECCcCHH-HHHHHHHHHcCCceEEEECCCC---------------CHHHHHhcCCCEEEEcCCCCChhh---cchhH
Confidence 4445443333 3466778888999887765431 123333235899999888654432 23346
Q ss_pred HHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 246 NMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 246 ~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
++++++ +++++|.+||.|-. +|+.+
T Consensus 64 ~~i~~~-~~~~PvLGIC~G~Q-ll~~~ 88 (188)
T TIGR00566 64 EAIRHF-AGKLPILGVCLGHQ-AMGQA 88 (188)
T ss_pred HHHHHh-ccCCCEEEECHHHH-HHHHH
Confidence 778776 67899999999999 88764
No 109
>PRK07567 glutamine amidotransferase; Provisional
Probab=97.23 E-value=0.0022 Score=54.84 Aligned_cols=96 Identities=15% Similarity=0.145 Sum_probs=54.9
Q ss_pred CeEEEEecCCCchhhHHHHHHHHHhCCCe---EEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh
Q 023800 161 PQILVPIANGSEEMEAVIIIDILRRAKAN---VVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA 237 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~---v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~ 237 (277)
++|+|+-....+........++|++.+.. ++++....+ +.... +.++||.|||.||..+...
T Consensus 2 ~~ililq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~--~~~~~dgvIi~Gg~~~~~d 66 (242)
T PRK07567 2 KPFLLLSPRPEDEAADAEYAAFLRYTGLDPAELRRIRLDRE-------------PLPDL--DLDDYSGVIVGGSPFNVSD 66 (242)
T ss_pred CcEEEEecCCCcccccchHHHHHHhcCCCccceEEEecccC-------------CCCCC--CHhhccEEEEcCCCCcCCC
Confidence 45666655433332235566777777654 444433222 00001 2356999999998532211
Q ss_pred h--hcCH-------HHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 238 F--AKSK-------KLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 238 ~--~~~~-------~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
. ...+ .+.++++...+++++|.+||-|.. +|+.+
T Consensus 67 ~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Q-lla~a 109 (242)
T PRK07567 67 PAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVG-TLGHH 109 (242)
T ss_pred CCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHH-HHHHH
Confidence 1 0111 233455555589999999999999 89875
No 110
>PLN02335 anthranilate synthase
Probab=97.22 E-value=0.0026 Score=53.62 Aligned_cols=91 Identities=10% Similarity=0.093 Sum_probs=59.1
Q ss_pred CCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh
Q 023800 159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF 238 (277)
Q Consensus 159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~ 238 (277)
+.++|+++ |..+ .-.....+.|++.|+++.++..+.. .++++...++|.|+|-||...+.+.
T Consensus 17 ~~~~ilvi--D~~d-sft~~i~~~L~~~g~~~~v~~~~~~---------------~~~~~~~~~~d~iVisgGPg~p~d~ 78 (222)
T PLN02335 17 QNGPIIVI--DNYD-SFTYNLCQYMGELGCHFEVYRNDEL---------------TVEELKRKNPRGVLISPGPGTPQDS 78 (222)
T ss_pred ccCcEEEE--ECCC-CHHHHHHHHHHHCCCcEEEEECCCC---------------CHHHHHhcCCCEEEEcCCCCChhhc
Confidence 34677776 4333 3334578889999999999965321 2232222358999999986544422
Q ss_pred hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
....+++++ ...++||.+||-|.. +|+.+
T Consensus 79 ---~~~~~~~~~-~~~~~PiLGIClG~Q-lLa~a 107 (222)
T PLN02335 79 ---GISLQTVLE-LGPLVPLFGVCMGLQ-CIGEA 107 (222)
T ss_pred ---cchHHHHHH-hCCCCCEEEecHHHH-HHHHH
Confidence 223455553 456799999999999 88863
No 111
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=97.21 E-value=0.0023 Score=52.63 Aligned_cols=87 Identities=9% Similarity=0.171 Sum_probs=58.2
Q ss_pred EEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHH
Q 023800 165 VPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKL 244 (277)
Q Consensus 165 ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~ 244 (277)
|++.|..+... .-..+.|++.|+++.++..+.. .++++...++|.||+-||...+.+ ....
T Consensus 2 il~id~~dsf~-~nl~~~l~~~~~~~~v~~~~~~---------------~~~~~~~~~~~~iilsgGP~~~~~---~~~~ 62 (191)
T PRK06774 2 LLLIDNYDSFT-YNLYQYFCELGTEVMVKRNDEL---------------QLTDIEQLAPSHLVISPGPCTPNE---AGIS 62 (191)
T ss_pred EEEEECCCchH-HHHHHHHHHCCCcEEEEeCCCC---------------CHHHHHhcCCCeEEEcCCCCChHh---CCCc
Confidence 34455544433 3467888889999998876531 233343346899999998654442 2234
Q ss_pred HHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 245 VNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 245 ~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
..+++. ++.+++|.+||-|.. +|+.+
T Consensus 63 ~~~i~~-~~~~~PiLGIC~G~Q-lla~~ 88 (191)
T PRK06774 63 LAVIRH-FADKLPILGVCLGHQ-ALGQA 88 (191)
T ss_pred hHHHHH-hcCCCCEEEECHHHH-HHHHH
Confidence 455554 577899999999999 89875
No 112
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.17 E-value=0.0028 Score=52.44 Aligned_cols=85 Identities=25% Similarity=0.264 Sum_probs=55.4
Q ss_pred EEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh--hc
Q 023800 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF--AK 240 (277)
Q Consensus 163 V~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~--~~ 240 (277)
|+|+=+..-+..++ ...|+..|+++.++.. .+++ .++|.||+||+....... ..
T Consensus 2 i~vid~g~gn~~~~---~~~l~~~g~~v~~~~~-------------------~~~l--~~~d~lilpG~g~~~~~~~~l~ 57 (199)
T PRK13181 2 IAIIDYGAGNLRSV---ANALKRLGVEAVVSSD-------------------PEEI--AGADKVILPGVGAFGQAMRSLR 57 (199)
T ss_pred EEEEeCCCChHHHH---HHHHHHCCCcEEEEcC-------------------hHHh--ccCCEEEECCCCCHHHHHHHHH
Confidence 34443333344333 4577888888877621 1222 358999999963222211 11
Q ss_pred CHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 241 ~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
...+.++|+++.+.+++|.+||.|.. +|+++
T Consensus 58 ~~~~~~~i~~~~~~~~PvlGiC~G~Q-ll~~~ 88 (199)
T PRK13181 58 ESGLDEALKEHVEKKQPVLGICLGMQ-LLFES 88 (199)
T ss_pred HCChHHHHHHHHHCCCCEEEECHhHH-Hhhhh
Confidence 23567899999999999999999999 89986
No 113
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=97.16 E-value=0.002 Score=58.17 Aligned_cols=87 Identities=21% Similarity=0.245 Sum_probs=62.1
Q ss_pred CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhc
Q 023800 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK 240 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~ 240 (277)
+||+++=+ |+. ...+..|.+.|.++.++..+. .++++...++|.|+++||...+..
T Consensus 178 ~~I~viD~-G~k----~nivr~L~~~G~~v~vvp~~~----------------~~~~i~~~~~DGIvLSgGPgdp~~--- 233 (360)
T PRK12564 178 YKVVAIDF-GVK----RNILRELAERGCRVTVVPATT----------------TAEEILALNPDGVFLSNGPGDPAA--- 233 (360)
T ss_pred CEEEEEeC-CcH----HHHHHHHHHCCCEEEEEeCCC----------------CHHHHHhcCCCEEEEeCCCCChHH---
Confidence 56776643 332 347788888999998886542 123332235899999998644432
Q ss_pred CHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 241 ~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
.+...++++++.++++||.+||.|.. +|+.+
T Consensus 234 ~~~~~~~i~~~~~~~~PilGIClG~Q-lLa~a 264 (360)
T PRK12564 234 LDYAIEMIRELLEKKIPIFGICLGHQ-LLALA 264 (360)
T ss_pred HHHHHHHHHHHHHcCCeEEEECHHHH-HHHHH
Confidence 36778899999988999999999999 78763
No 114
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=97.15 E-value=0.00073 Score=55.28 Aligned_cols=72 Identities=17% Similarity=0.135 Sum_probs=49.4
Q ss_pred hHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccCCCccch--hccccChHHHHHHHHHHhCCCEEEEEch
Q 023800 5 ITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACGMPGA--TNLKESEVLESIVKKQASDGRLYAAICV 82 (277)
Q Consensus 5 ~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~gG~~~~--~~~~~~~~~~~~l~~~~~~g~~i~aiC~ 82 (277)
...+.|++.|+++.+++... .+....++-+. ||. .. ..+..+..+.++|+++.++|+++.+||.
T Consensus 13 e~~~~l~~~g~~~~~v~~~~--~l~~~d~liip-----------GG~-~~~~~~l~~~~~l~~~i~~~~~~g~pilGIC~ 78 (184)
T TIGR03800 13 EHARALEALGVEGVEVKRPE--QLDEIDGLIIP-----------GGE-STTLSRLLDKYGMFEPLRNFILSGLPVFGTCA 78 (184)
T ss_pred HHHHHHHHCCCEEEEECChH--HhccCCEEEEC-----------CCC-HHHHHHHHHhccHHHHHHHHHHcCCcEEEECH
Confidence 35678888999888887632 11111111111 663 22 2334556788999999999999999999
Q ss_pred hHHHHHHHc
Q 023800 83 FLAVALGSW 91 (277)
Q Consensus 83 g~~~~La~a 91 (277)
|.. +|+++
T Consensus 79 G~q-lL~~~ 86 (184)
T TIGR03800 79 GLI-MLAKE 86 (184)
T ss_pred HHH-HHHhh
Confidence 999 89988
No 115
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.08 E-value=0.0024 Score=52.75 Aligned_cols=83 Identities=20% Similarity=0.337 Sum_probs=51.3
Q ss_pred CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcC-CcchHHhhh
Q 023800 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPG-GLGGAQAFA 239 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpG-G~~~~~~~~ 239 (277)
++|+|+=+-.-+... ...+|++.|.+++++... +++ .++|.||+|| |.. .....
T Consensus 1 m~i~iid~g~gn~~s---~~~~l~~~g~~~~~v~~~-------------------~~~--~~~d~iIlPG~G~~-~~~~~ 55 (196)
T PRK13170 1 MNVVIIDTGCANLSS---VKFAIERLGYEPVVSRDP-------------------DVI--LAADKLFLPGVGTA-QAAMD 55 (196)
T ss_pred CeEEEEeCCCchHHH---HHHHHHHCCCeEEEECCH-------------------HHh--CCCCEEEECCCCch-HHHHH
Confidence 356766554444444 344778888888777321 222 3578999999 542 22111
Q ss_pred c--CHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 240 K--SKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 240 ~--~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
. ...+.++++ +.+++|.+||.|.. +|+++
T Consensus 56 ~l~~~~l~~~i~---~~~~PilGIClG~Q-ll~~~ 86 (196)
T PRK13170 56 QLRERELIDLIK---ACTQPVLGICLGMQ-LLGER 86 (196)
T ss_pred HHHHcChHHHHH---HcCCCEEEECHHHH-HHhhh
Confidence 1 123444444 45899999999999 89976
No 116
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=97.07 E-value=0.0033 Score=51.78 Aligned_cols=87 Identities=11% Similarity=0.134 Sum_probs=57.8
Q ss_pred EEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHH
Q 023800 165 VPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKL 244 (277)
Q Consensus 165 ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~ 244 (277)
|++.|+++.... -..+.|++.|+++.++..+.. .+.++...++|.+++-||...+.+ +...
T Consensus 2 il~id~~dsft~-~~~~~l~~~g~~~~~~~~~~~---------------~~~~~~~~~~~~iilsgGp~~~~~---~~~~ 62 (193)
T PRK08857 2 LLMIDNYDSFTY-NLYQYFCELGAQVKVVRNDEI---------------DIDGIEALNPTHLVISPGPCTPNE---AGIS 62 (193)
T ss_pred EEEEECCCCcHH-HHHHHHHHCCCcEEEEECCCC---------------CHHHHhhCCCCEEEEeCCCCChHH---Ccch
Confidence 455565554443 477888999999999976532 111111234788999888644432 3334
Q ss_pred HHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 245 VNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 245 ~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
..+++. .+.+++|.+||-|.. +|+.+
T Consensus 63 ~~~i~~-~~~~~PiLGIClG~Q-lia~a 88 (193)
T PRK08857 63 LQAIEH-FAGKLPILGVCLGHQ-AIAQV 88 (193)
T ss_pred HHHHHH-hcCCCCEEEEcHHHH-HHHHH
Confidence 566765 578999999999999 88874
No 117
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=97.04 E-value=0.0025 Score=47.72 Aligned_cols=86 Identities=21% Similarity=0.259 Sum_probs=56.9
Q ss_pred eEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcch--HHhhh
Q 023800 162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG--AQAFA 239 (277)
Q Consensus 162 kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~--~~~~~ 239 (277)
+|+|.--+|.+..-+......|+..- +++.++.+- |. +..+. .++|.|++|||... +..+.
T Consensus 1 ~v~VY~g~g~~~~~~~~~~~~L~~~~-~v~~~~~~~-----------I~-~~~~~----~~ad~lVlPGGa~~~~~~~L~ 63 (114)
T cd03144 1 NVLVYNGPGASPGSLKHLAELLRLYL-AVSTVTADE-----------LA-VGPWE----SKTALLVVPGGADLPYCRALN 63 (114)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHhhcc-ceeeecHHH-----------Hh-cCchh----hCCCEEEECCCChHHHHHHHH
Confidence 36677777888888888888887754 444443321 00 11111 36899999998532 22222
Q ss_pred cCHHHHHHHHHHHHcCCcEEEEchhhH
Q 023800 240 KSKKLVNMLKKQKESNRPYGAICASPA 266 (277)
Q Consensus 240 ~~~~~~~~l~~~~~~~~~i~aiC~G~~ 266 (277)
... .+.|+++.++++++.+||.|+.
T Consensus 64 -~~g-~~~i~~~v~~g~p~LGIClGAy 88 (114)
T cd03144 64 -GKG-NRRIRNFVRNGGNYLGICAGAY 88 (114)
T ss_pred -hhC-cHHHHHHHHCCCcEEEEecCcc
Confidence 223 7888998999999999999998
No 118
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=97.03 E-value=0.0026 Score=51.73 Aligned_cols=75 Identities=15% Similarity=0.156 Sum_probs=49.4
Q ss_pred HHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCC
Q 023800 177 VIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNR 256 (277)
Q Consensus 177 ~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~ 256 (277)
....+.|+..|.++.++..+.. .++.+..++|.|++|||...... ...+.+ .+...+.++
T Consensus 12 ~~~~~~l~~~G~~~~~~~~~~~----------------~~~~~~~~~dgvIl~Gg~~~~~~-~~~~~~---~~~~~~~~~ 71 (181)
T cd01742 12 HLIARRVRELGVYSEILPNTTP----------------LEEIKLKNPKGIILSGGPSSVYE-EDAPRV---DPEIFELGV 71 (181)
T ss_pred HHHHHHHHhcCceEEEecCCCC----------------hhhhcccCCCEEEECCCcccccc-cccchh---hHHHHhcCC
Confidence 3467888889998888865431 11122357999999998532211 112233 344456699
Q ss_pred cEEEEchhhHHhhhhC
Q 023800 257 PYGAICASPALVLEPH 272 (277)
Q Consensus 257 ~i~aiC~G~~~lLa~a 272 (277)
++.+||.|.. +|+.+
T Consensus 72 PilGIC~G~Q-ll~~~ 86 (181)
T cd01742 72 PVLGICYGMQ-LIAKA 86 (181)
T ss_pred CEEEEcHHHH-HHHHh
Confidence 9999999999 89874
No 119
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=97.00 E-value=0.00095 Score=54.02 Aligned_cols=40 Identities=18% Similarity=0.099 Sum_probs=31.6
Q ss_pred CCccchh--ccccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800 49 CGMPGAT--NLKESEVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (277)
Q Consensus 49 gG~~~~~--~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (277)
|| .+.. .+.++..+.+.|+++.+ ++++.+||.|+. +|++.
T Consensus 47 GG-~~t~~~~ll~~~~l~~~Ik~~~~-~kpilGICaG~q-lL~~~ 88 (179)
T PRK13526 47 GG-ESTTLLNLLNKHQIFDKLYNFCS-SKPVFGTCAGSI-ILSKG 88 (179)
T ss_pred CC-hHHHHHHHhhhcCcHHHHHHHHc-CCcEEEEcHHHH-HHHcc
Confidence 77 3443 45556679999999885 789999999999 89983
No 120
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=97.00 E-value=0.0035 Score=51.18 Aligned_cols=75 Identities=20% Similarity=0.255 Sum_probs=51.1
Q ss_pred HHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCc
Q 023800 178 IIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRP 257 (277)
Q Consensus 178 ~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~ 257 (277)
...+.|++.|+++.++..+.. +....+ ...+|.||+.||..... .. .....+++...++++
T Consensus 13 ~~~~~l~~~G~~~~~~~~~~~-------------~~~~~~--~~~~dgvil~gG~~~~~---~~-~~~~~i~~~~~~~~P 73 (184)
T cd01743 13 NLVQYLRELGAEVVVVRNDEI-------------TLEELE--LLNPDAIVISPGPGHPE---DA-GISLEIIRALAGKVP 73 (184)
T ss_pred HHHHHHHHcCCceEEEeCCCC-------------CHHHHh--hcCCCEEEECCCCCCcc---cc-hhHHHHHHHHhcCCC
Confidence 456788889999999987643 111112 24699999977643221 12 245556666678899
Q ss_pred EEEEchhhHHhhhhC
Q 023800 258 YGAICASPALVLEPH 272 (277)
Q Consensus 258 i~aiC~G~~~lLa~a 272 (277)
|.+||-|.. +|+.+
T Consensus 74 vlGIC~G~Q-lla~~ 87 (184)
T cd01743 74 ILGVCLGHQ-AIAEA 87 (184)
T ss_pred EEEECHhHH-HHHHH
Confidence 999999999 89874
No 121
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.00 E-value=0.0069 Score=57.53 Aligned_cols=88 Identities=14% Similarity=0.234 Sum_probs=60.7
Q ss_pred CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh-
Q 023800 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF- 238 (277)
Q Consensus 160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~- 238 (277)
.++|+|+=|-.-+..++ ...|++.|+++.++.. .+++ ..+|.||+||+......+
T Consensus 6 ~~~i~iiDyG~GN~~sl---~~al~~~G~~v~~v~~-------------------~~~l--~~~D~lIlpG~gs~~~~m~ 61 (538)
T PLN02617 6 DSEVTLLDYGAGNVRSV---RNAIRHLGFTIKDVQT-------------------PEDI--LNADRLIFPGVGAFGSAMD 61 (538)
T ss_pred CCeEEEEECCCCCHHHH---HHHHHHCCCeEEEECC-------------------hhhh--ccCCEEEECCCCCHHHHHH
Confidence 46888876655555444 5777778888866631 0122 468999999964322211
Q ss_pred -hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 239 -AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 239 -~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
.....+.+.|+++.+.++++.+||.|.. +|+++
T Consensus 62 ~L~~~gl~~~i~~~i~~g~PvLGIC~G~Q-lLa~~ 95 (538)
T PLN02617 62 VLNNRGMAEALREYIQNDRPFLGICLGLQ-LLFES 95 (538)
T ss_pred HHHHcCHHHHHHHHHHcCCCEEEECHHHH-HHhhh
Confidence 1223477889999999999999999999 89975
No 122
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=96.99 E-value=0.0026 Score=43.71 Aligned_cols=74 Identities=24% Similarity=0.346 Sum_probs=49.8
Q ss_pred hhhHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchhccccChHHHHHHHHHHhCCCEEEE
Q 023800 3 AVITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLKESEVLESIVKKQASDGRLYAA 79 (277)
Q Consensus 3 ~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~a 79 (277)
+..+.+.+++.++++.+++.... .... .....+.+.. ||.........++.+.+|++++..+|+++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~--------~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 84 (92)
T cd03128 14 LASPLDALREAGAEVDVVSPDGG-PVES--------DVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLG 84 (92)
T ss_pred eecHHHHHHhCCCEEEEEeCCCC-cccc--------cCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEE
Confidence 45678899999999999998863 2222 1111222211 4422222222468999999999999999999
Q ss_pred EchhHH
Q 023800 80 ICVFLA 85 (277)
Q Consensus 80 iC~g~~ 85 (277)
+|.|++
T Consensus 85 ~~~g~~ 90 (92)
T cd03128 85 ICLGAQ 90 (92)
T ss_pred Eecccc
Confidence 999987
No 123
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=96.98 E-value=0.0039 Score=51.47 Aligned_cols=87 Identities=9% Similarity=0.217 Sum_probs=57.4
Q ss_pred EEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHH
Q 023800 165 VPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKL 244 (277)
Q Consensus 165 ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~ 244 (277)
|++.|..+... ....+.|++.|+++.++..+.. .++++...++|.||+-||...+.. ....
T Consensus 2 il~idn~dsft-~nl~~~l~~~g~~v~v~~~~~~---------------~~~~~~~~~~d~iIlsgGP~~p~~---~~~~ 62 (195)
T PRK07649 2 ILMIDNYDSFT-FNLVQFLGELGQELVVKRNDEV---------------TISDIENMKPDFLMISPGPCSPNE---AGIS 62 (195)
T ss_pred EEEEeCCCccH-HHHHHHHHHCCCcEEEEeCCCC---------------CHHHHhhCCCCEEEECCCCCChHh---CCCc
Confidence 34455544443 3478889999999988875421 123333346899999998654443 2234
Q ss_pred HHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 245 VNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 245 ~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
...++. ++.++|+.+||-|.. +|+.+
T Consensus 63 ~~~i~~-~~~~~PvLGIClG~Q-lla~~ 88 (195)
T PRK07649 63 MEVIRY-FAGKIPIFGVCLGHQ-SIAQV 88 (195)
T ss_pred hHHHHH-hcCCCCEEEEcHHHH-HHHHH
Confidence 455554 457899999999999 89874
No 124
>CHL00101 trpG anthranilate synthase component 2
Probab=96.97 E-value=0.0043 Score=50.96 Aligned_cols=76 Identities=12% Similarity=0.152 Sum_probs=51.7
Q ss_pred HHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCC
Q 023800 177 VIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNR 256 (277)
Q Consensus 177 ~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~ 256 (277)
....+.|+..|.++.++..+.. .+.++....+|.|+|-||...+.+. .+...+.+.++.++
T Consensus 13 ~~l~~~l~~~g~~~~v~~~~~~---------------~~~~~~~~~~dgiiisgGpg~~~~~----~~~~~i~~~~~~~~ 73 (190)
T CHL00101 13 YNLVQSLGELNSDVLVCRNDEI---------------DLSKIKNLNIRHIIISPGPGHPRDS----GISLDVISSYAPYI 73 (190)
T ss_pred HHHHHHHHhcCCCEEEEECCCC---------------CHHHHhhCCCCEEEECCCCCChHHC----cchHHHHHHhcCCC
Confidence 4577888888988877765421 2223322468999999986544322 23334445677899
Q ss_pred cEEEEchhhHHhhhhC
Q 023800 257 PYGAICASPALVLEPH 272 (277)
Q Consensus 257 ~i~aiC~G~~~lLa~a 272 (277)
++.+||-|.. +||.+
T Consensus 74 PiLGIClG~Q-lla~~ 88 (190)
T CHL00101 74 PILGVCLGHQ-SIGYL 88 (190)
T ss_pred cEEEEchhHH-HHHHH
Confidence 9999999999 89874
No 125
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=96.96 E-value=0.0065 Score=50.23 Aligned_cols=77 Identities=18% Similarity=0.179 Sum_probs=53.0
Q ss_pred HHHHHHHHhCCC-eEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhc--CHHHHHHHHHHHH
Q 023800 177 VIIIDILRRAKA-NVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK--SKKLVNMLKKQKE 253 (277)
Q Consensus 177 ~~~~~~l~~a~~-~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~--~~~~~~~l~~~~~ 253 (277)
-.+...++..|+ ...++..+.. ...++...+|.+||.||..+ ..... .+...+||++...
T Consensus 15 ~li~r~~re~g~v~~e~~~~~~~----------------~~~~~~~~~~giIlsGgp~s-v~~~~~w~~~~~~~i~~~~~ 77 (198)
T COG0518 15 GLIARRLRELGYVYSEIVPYTGD----------------AEELPLDSPDGIIISGGPMS-VYDEDPWLPREKDLIKDAGV 77 (198)
T ss_pred HHHHHHHHHcCCceEEEEeCCCC----------------cccccccCCCEEEEcCCCCC-CccccccchhHHHHHHHhCC
Confidence 345577788884 3444444332 22333345699999999632 22233 5788999999999
Q ss_pred cCCcEEEEchhhHHhhhh
Q 023800 254 SNRPYGAICASPALVLEP 271 (277)
Q Consensus 254 ~~~~i~aiC~G~~~lLa~ 271 (277)
.+++|.+||.|.. +||+
T Consensus 78 p~~pvLGIC~G~Q-l~A~ 94 (198)
T COG0518 78 PGKPVLGICLGHQ-LLAK 94 (198)
T ss_pred CCCCEEEEChhHH-HHHH
Confidence 9999999999999 8987
No 126
>PRK05637 anthranilate synthase component II; Provisional
Probab=96.95 E-value=0.0059 Score=50.95 Aligned_cols=74 Identities=20% Similarity=0.281 Sum_probs=50.5
Q ss_pred HHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCc
Q 023800 178 IIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRP 257 (277)
Q Consensus 178 ~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~ 257 (277)
...+.|++.|+++.++..+- .++++....+|.||+-||..++.+ .....++++++. .+++
T Consensus 16 nl~~~l~~~g~~~~v~~~~~----------------~~~~l~~~~~~~iIlsgGPg~~~d---~~~~~~li~~~~-~~~P 75 (208)
T PRK05637 16 NLVDAFAVAGYKCTVFRNTV----------------PVEEILAANPDLICLSPGPGHPRD---AGNMMALIDRTL-GQIP 75 (208)
T ss_pred HHHHHHHHCCCcEEEEeCCC----------------CHHHHHhcCCCEEEEeCCCCCHHH---hhHHHHHHHHHh-CCCC
Confidence 47788999999998886542 123332246899999777544432 223345665443 5799
Q ss_pred EEEEchhhHHhhhhC
Q 023800 258 YGAICASPALVLEPH 272 (277)
Q Consensus 258 i~aiC~G~~~lLa~a 272 (277)
|.+||-|.. +|+.+
T Consensus 76 iLGIClG~Q-lla~a 89 (208)
T PRK05637 76 LLGICLGFQ-ALLEH 89 (208)
T ss_pred EEEEcHHHH-HHHHH
Confidence 999999999 89875
No 127
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=96.87 E-value=0.012 Score=49.30 Aligned_cols=95 Identities=20% Similarity=0.208 Sum_probs=64.9
Q ss_pred CCeEEEEecCCCchhh-HHHHHHHHHhC-CCeEEEEeeCCCceEEcccCcEEEeCcc-hhhhccCCccEEEEcCCcchHH
Q 023800 160 SPQILVPIANGSEEME-AVIIIDILRRA-KANVVVASVADKLEILASCQVKLVADML-IDEAAKLSYDLIVLPGGLGGAQ 236 (277)
Q Consensus 160 ~~kV~ill~~g~~~~e-~~~~~~~l~~a-~~~v~~vs~~~~~~v~~~~g~~i~~~~~-~~~~~~~~~D~livpGG~~~~~ 236 (277)
.+||+++-.......+ +.....+|++. |+++..+.... +.. .+.+ ..+|+|++|||.. ..
T Consensus 31 ~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~--------------~~~~~~~l--~~ad~I~l~GG~~-~~ 93 (212)
T cd03146 31 RPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFD--------------TEDPLDAL--LEADVIYVGGGNT-FN 93 (212)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccC--------------cccHHHHH--hcCCEEEECCchH-HH
Confidence 3678888765544434 45677888888 88877664321 122 2333 4689999999853 22
Q ss_pred hhh--cCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 237 AFA--KSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 237 ~~~--~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
.+. ....+.+.|++.+++|++++++|.|+. ++.+.
T Consensus 94 ~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa~-i~~~~ 130 (212)
T cd03146 94 LLAQWREHGLDAILKAALERGVVYIGWSAGSN-CWFPS 130 (212)
T ss_pred HHHHHHHcCHHHHHHHHHHCCCEEEEECHhHH-hhCCC
Confidence 111 123578888988999999999999999 88874
No 128
>PRK05380 pyrG CTP synthetase; Validated
Probab=96.87 E-value=0.016 Score=54.49 Aligned_cols=149 Identities=19% Similarity=0.230 Sum_probs=84.9
Q ss_pred CCCeEcCCCCCCHHHHHHHHHHHhcChhHHHHHhhcccccccCCCchhhcccCcccccc---CCCCeEEEEecCCCchh-
Q 023800 99 DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTF---DNSPQILVPIANGSEEM- 174 (277)
Q Consensus 99 dg~~iT~~g~~~~~~~a~~li~~l~g~~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~kV~ill~~g~~~~- 174 (277)
..++|++....+..+.=+.+-++ ...+.+.+.+.++..... +.+-..+...+ ....+|+++= .-....
T Consensus 231 ~~~vi~~~d~~~iy~vPl~l~~q----~~~~~i~~~l~l~~~~~~---~~~w~~~~~~~~~~~~~v~IalVG-KY~~l~D 302 (533)
T PRK05380 231 EEAVISAPDVDSIYEVPLLLHEQ----GLDDIVLERLGLEAPEPD---LSEWEELVERLKNPKGEVTIALVG-KYVELPD 302 (533)
T ss_pred HHHEEEcCCCccHHhhhHHHHHC----CCHHHHHHHcCCCCCCCC---HHHHHHHHHHHhCCCCceEEEEEe-CccCCcH
Confidence 44677777776655554444443 355667777766531111 11111111111 2234566653 212222
Q ss_pred hHHHHHHHHHhCCC----eEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHH
Q 023800 175 EAVIIIDILRRAKA----NVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKK 250 (277)
Q Consensus 175 e~~~~~~~l~~a~~----~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~ 250 (277)
.+....++|+.+++ ++.+...+.. .+... ...+. ...+|.|++|||++. . ..+....+++.
T Consensus 303 aY~Sv~eAL~hag~~~~~~v~i~wIdse-~l~~~--------~~~~~--L~~~DGIIlpGGfG~-~---~~~g~i~~i~~ 367 (533)
T PRK05380 303 AYKSVIEALKHAGIANDVKVNIKWIDSE-DLEEE--------NVAEL--LKGVDGILVPGGFGE-R---GIEGKILAIRY 367 (533)
T ss_pred HHHHHHHHHHHHHHHcCCeeEEEEEChh-hccCc--------chhhH--hhcCCEEEecCCCCc-c---ccccHHHHHHH
Confidence 35677888888754 4555555443 22211 11122 246899999999742 2 23456788999
Q ss_pred HHHcCCcEEEEchhhHHhhhh
Q 023800 251 QKESNRPYGAICASPALVLEP 271 (277)
Q Consensus 251 ~~~~~~~i~aiC~G~~~lLa~ 271 (277)
+.++++|+.+||.|.. +++-
T Consensus 368 a~e~~iPiLGIClGmQ-ll~v 387 (533)
T PRK05380 368 ARENNIPFLGICLGMQ-LAVI 387 (533)
T ss_pred HHHCCCcEEEEchHHH-HHHH
Confidence 9999999999999998 6653
No 129
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=96.85 E-value=0.0068 Score=54.66 Aligned_cols=90 Identities=20% Similarity=0.262 Sum_probs=65.2
Q ss_pred CeEEEEecCCCchhhHHHHHHHHHhC---CCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh
Q 023800 161 PQILVPIANGSEEMEAVIIIDILRRA---KANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA 237 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~~~~~~~l~~a---~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~ 237 (277)
|+|+|.--+|.....+...++.|++. .|.|..++.+. +..+ .|. ..+|++++|||...+..
T Consensus 1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~~~~-----------l~~~-pw~----~~~~LlV~PGG~d~~y~ 64 (367)
T PF09825_consen 1 MNVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVTADE-----------LLNE-PWQ----SKCALLVMPGGADLPYC 64 (367)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeCHHH-----------hhcC-ccc----cCCcEEEECCCcchHHH
Confidence 57888888999999999999999863 46776664431 1111 122 35799999999632221
Q ss_pred hhcCHHHHHHHHHHHHcCCcEEEEchhhH
Q 023800 238 FAKSKKLVNMLKKQKESNRPYGAICASPA 266 (277)
Q Consensus 238 ~~~~~~~~~~l~~~~~~~~~i~aiC~G~~ 266 (277)
..-+..-.+.||++.++|..-.+||.|++
T Consensus 65 ~~l~~~g~~~Ir~fV~~GG~YlGiCAGaY 93 (367)
T PF09825_consen 65 RSLNGEGNRRIRQFVENGGGYLGICAGAY 93 (367)
T ss_pred HhhChHHHHHHHHHHHcCCcEEEECcchh
Confidence 12245668899999999999999999999
No 130
>PRK00758 GMP synthase subunit A; Validated
Probab=96.84 E-value=0.0059 Score=49.82 Aligned_cols=68 Identities=21% Similarity=0.351 Sum_probs=46.8
Q ss_pred HHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCc-cEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCc
Q 023800 179 IIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSY-DLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRP 257 (277)
Q Consensus 179 ~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~-D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~ 257 (277)
..+.|++.|.++.++..+.. .+++ ..+ |.|+++||. ... ....+.+|++ +.+++
T Consensus 15 i~~~l~~~g~~~~~~~~~~~----------------~~~l--~~~~dgivi~Gg~-~~~---~~~~~~~~l~---~~~~P 69 (184)
T PRK00758 15 IHRTLRYLGVDAKIIPNTTP----------------VEEI--KAFEDGLILSGGP-DIE---RAGNCPEYLK---ELDVP 69 (184)
T ss_pred HHHHHHHcCCcEEEEECCCC----------------HHHH--hhcCCEEEECCCC-Chh---hccccHHHHH---hCCCC
Confidence 46778888988877654321 2233 245 999999985 222 2234556766 45899
Q ss_pred EEEEchhhHHhhhhC
Q 023800 258 YGAICASPALVLEPH 272 (277)
Q Consensus 258 i~aiC~G~~~lLa~a 272 (277)
|.+||.|.. +|+++
T Consensus 70 ilGIC~G~Q-~L~~a 83 (184)
T PRK00758 70 ILGICLGHQ-LIAKA 83 (184)
T ss_pred EEEEeHHHH-HHHHh
Confidence 999999999 89875
No 131
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=96.83 E-value=0.01 Score=53.91 Aligned_cols=88 Identities=20% Similarity=0.227 Sum_probs=61.3
Q ss_pred CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhh
Q 023800 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA 239 (277)
Q Consensus 160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~ 239 (277)
.+||+++=+ |+. ......|++.|+++.++..+. +.+++...++|.|++.||...+.
T Consensus 192 ~~~I~viD~-g~k----~ni~~~L~~~G~~v~vvp~~~----------------~~~~i~~~~~dgIilSgGPg~p~--- 247 (382)
T CHL00197 192 QLKIIVIDF-GVK----YNILRRLKSFGCSITVVPATS----------------PYQDILSYQPDGILLSNGPGDPS--- 247 (382)
T ss_pred CCEEEEEEC-CcH----HHHHHHHHHCCCeEEEEcCCC----------------CHHHHhccCCCEEEEcCCCCChh---
Confidence 357777654 443 237888899999998884332 12333334689999999865443
Q ss_pred cCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 240 ~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
......+.++++.+.+.+|.+||-|-. +|+.+
T Consensus 248 ~~~~~i~~i~~~~~~~~PilGIClGhQ-lLa~a 279 (382)
T CHL00197 248 AIHYGIKTVKKLLKYNIPIFGICMGHQ-ILSLA 279 (382)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcHHHH-HHHHH
Confidence 234566777877777899999999999 88864
No 132
>PRK13566 anthranilate synthase; Provisional
Probab=96.81 E-value=0.0092 Score=58.69 Aligned_cols=90 Identities=16% Similarity=0.236 Sum_probs=64.7
Q ss_pred CCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh
Q 023800 159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF 238 (277)
Q Consensus 159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~ 238 (277)
..++|+++=+. +.-.....+.|++.|+++.++..+.. ...++ ..++|.||+.||...+.
T Consensus 525 ~g~~IlvID~~---dsf~~~l~~~Lr~~G~~v~vv~~~~~-------------~~~~~---~~~~DgVVLsgGpgsp~-- 583 (720)
T PRK13566 525 EGKRVLLVDHE---DSFVHTLANYFRQTGAEVTTVRYGFA-------------EEMLD---RVNPDLVVLSPGPGRPS-- 583 (720)
T ss_pred CCCEEEEEECC---CchHHHHHHHHHHCCCEEEEEECCCC-------------hhHhh---hcCCCEEEECCCCCChh--
Confidence 45788776544 23356788899999999999877532 11112 13589999876654333
Q ss_pred hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
+..+..+++...++++||.+||-|.. +|+++
T Consensus 584 --d~~~~~lI~~a~~~~iPILGIClG~Q-lLa~a 614 (720)
T PRK13566 584 --DFDCKATIDAALARNLPIFGVCLGLQ-AIVEA 614 (720)
T ss_pred --hCCcHHHHHHHHHCCCcEEEEehhHH-HHHHH
Confidence 23467899999999999999999999 88874
No 133
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=96.77 E-value=0.01 Score=53.52 Aligned_cols=86 Identities=22% Similarity=0.256 Sum_probs=59.8
Q ss_pred CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhc
Q 023800 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK 240 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~ 240 (277)
++|+++=+ |+. ...+..|++.|.++.++..+. +++++....+|.|+++||...+. .
T Consensus 174 ~~i~viD~-G~k----~ni~~~L~~~G~~v~vvp~~~----------------~~~~i~~~~pDGIiLSgGPgdp~---~ 229 (358)
T TIGR01368 174 KRVVVIDF-GVK----QNILRRLVKRGCEVTVVPYDT----------------DAEEIKKYNPDGIFLSNGPGDPA---A 229 (358)
T ss_pred cEEEEEeC-CcH----HHHHHHHHHCCCEEEEEcCCC----------------CHHHHHhhCCCEEEECCCCCCHH---H
Confidence 46666543 433 357788899999998874331 12333223469999999864443 3
Q ss_pred CHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 241 ~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
.+...++++++.+ ++||.+||-|.. +|+.+
T Consensus 230 ~~~~i~~i~~~~~-~~PILGIClG~Q-lLa~a 259 (358)
T TIGR01368 230 VEPAIETIRKLLE-KIPIFGICLGHQ-LLALA 259 (358)
T ss_pred HHHHHHHHHHHHc-CCCEEEECHHHH-HHHHH
Confidence 4567788888887 899999999999 88764
No 134
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=96.75 E-value=0.0046 Score=57.21 Aligned_cols=88 Identities=26% Similarity=0.304 Sum_probs=59.1
Q ss_pred CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchH--Hhh
Q 023800 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA--QAF 238 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~--~~~ 238 (277)
.||+|.- |..--.=+-.-++.|+.+ .++..+|+-.. +++ +++|+|++|||.... ..+
T Consensus 234 ~~iavA~-D~AF~FyY~enl~~L~~~-aelv~fSPl~~-----------------~~l--p~~D~l~lpGG~~e~~~~~L 292 (433)
T PRK13896 234 PTVAVAR-DAAFCFRYPATIERLRER-ADVVTFSPVAG-----------------DPL--PDCDGVYLPGGYPELHADAL 292 (433)
T ss_pred CeEEEEE-cCccceeCHHHHHHHHhc-CcEEEEcCCCC-----------------CCC--CCCCEEEeCCCchhhHHHHH
Confidence 4777764 422222223345777777 88888887432 112 257999999997421 223
Q ss_pred hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800 239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (277)
Q Consensus 239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~ 271 (277)
..+... +.|+++.++|++|.++|.|-. +|.+
T Consensus 293 ~~n~~~-~~i~~~~~~G~pi~aeCGG~q-~L~~ 323 (433)
T PRK13896 293 ADSPAL-DELADRAADGLPVLGECGGLM-ALAE 323 (433)
T ss_pred HhCCcH-HHHHHHHHCCCcEEEEehHHH-Hhhc
Confidence 334344 889999999999999999999 7876
No 135
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=96.70 E-value=0.011 Score=58.05 Aligned_cols=90 Identities=17% Similarity=0.210 Sum_probs=63.1
Q ss_pred CCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh
Q 023800 159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF 238 (277)
Q Consensus 159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~ 238 (277)
..++|+|+=+. +.-.....+.|++.|+++.++..... +..++ ...+|.|||.||...+.
T Consensus 515 ~~~~IlVID~g---ds~~~~l~~~L~~~G~~v~vv~~~~~-------------~~~~~---~~~~DgLILsgGPGsp~-- 573 (717)
T TIGR01815 515 EGRRILLVDHE---DSFVHTLANYLRQTGASVTTLRHSHA-------------EAAFD---ERRPDLVVLSPGPGRPA-- 573 (717)
T ss_pred CCCEEEEEECC---ChhHHHHHHHHHHCCCeEEEEECCCC-------------hhhhh---hcCCCEEEEcCCCCCch--
Confidence 45788887533 33356788999999999988865421 01111 13589999966643332
Q ss_pred hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 239 AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
+....++|++..+.+++|.+||-|.. +|+++
T Consensus 574 --d~~~~~~I~~~~~~~iPvLGICLG~Q-lLa~a 604 (717)
T TIGR01815 574 --DFDVAGTIDAALARGLPVFGVCLGLQ-GMVEA 604 (717)
T ss_pred --hcccHHHHHHHHHCCCCEEEECHHHH-HHhhh
Confidence 23457789998999999999999999 89875
No 136
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=96.68 E-value=0.0075 Score=54.34 Aligned_cols=86 Identities=22% Similarity=0.275 Sum_probs=59.5
Q ss_pred CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhc
Q 023800 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK 240 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~ 240 (277)
++|.++=+ |+ -....+.|++.|+++.++-.+.. .+++....+|.|+++||...+. .
T Consensus 168 ~~V~viD~-G~----k~ni~~~L~~~G~~v~vvp~~~~----------------~~~i~~~~~DGIiLsgGPgdp~---~ 223 (354)
T PRK12838 168 KHVALIDF-GY----KKSILRSLSKRGCKVTVLPYDTS----------------LEEIKNLNPDGIVLSNGPGDPK---E 223 (354)
T ss_pred CEEEEECC-CH----HHHHHHHHHHCCCeEEEEECCCC----------------HHHHhhcCCCEEEEcCCCCChH---H
Confidence 56666533 32 25577888889999988854321 2232223689999999864433 2
Q ss_pred CHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 241 ~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
.....++++++.++ +||.+||-|.. +|+.+
T Consensus 224 ~~~~~~~i~~~~~~-~PvlGIClG~Q-lLa~a 253 (354)
T PRK12838 224 LQPYLPEIKKLISS-YPILGICLGHQ-LIALA 253 (354)
T ss_pred hHHHHHHHHHHhcC-CCEEEECHHHH-HHHHH
Confidence 34567788888877 99999999999 88864
No 137
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=96.68 E-value=0.0074 Score=50.05 Aligned_cols=73 Identities=18% Similarity=0.234 Sum_probs=46.7
Q ss_pred HHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhc--CHHHHHHHHHH-HHc
Q 023800 178 IIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK--SKKLVNMLKKQ-KES 254 (277)
Q Consensus 178 ~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~--~~~~~~~l~~~-~~~ 254 (277)
...+.|++.|+++.++... +++ ..+|.||+||+....+.... ...+...|+++ .++
T Consensus 14 ~v~~~l~~~g~~~~~~~~~-------------------~~l--~~~d~lilPG~g~~~~~~~~l~~~~~~~~l~~~~~~~ 72 (201)
T PRK13152 14 SVAKAFEKIGAINFIAKNP-------------------KDL--QKADKLLLPGVGSFKEAMKNLKELGFIEALKEQVLVQ 72 (201)
T ss_pred HHHHHHHHCCCeEEEECCH-------------------HHH--cCCCEEEECCCCchHHHHHHHHHcCcHHHHHHHHHhC
Confidence 4456777777777665321 122 35899999997432221111 11344556554 588
Q ss_pred CCcEEEEchhhHHhhhhC
Q 023800 255 NRPYGAICASPALVLEPH 272 (277)
Q Consensus 255 ~~~i~aiC~G~~~lLa~a 272 (277)
+++|.+||.|.. +|+.+
T Consensus 73 ~~pvlGiC~G~Q-~l~~~ 89 (201)
T PRK13152 73 KKPILGICLGMQ-LFLER 89 (201)
T ss_pred CCcEEEECHhHH-HHhhc
Confidence 999999999999 89986
No 138
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=96.61 E-value=0.0057 Score=51.11 Aligned_cols=84 Identities=18% Similarity=0.196 Sum_probs=55.9
Q ss_pred EEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcc---hHHhhh
Q 023800 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLG---GAQAFA 239 (277)
Q Consensus 163 V~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~---~~~~~~ 239 (277)
|+|+=|-.-+ +......+++.++++.+++.. +++ .++|.||+||+.. ....+.
T Consensus 2 i~iidyg~gN---l~s~~~al~~~~~~~~~~~~~-------------------~~l--~~~d~iIlPG~g~~~~~~~~l~ 57 (210)
T PRK14004 2 IAILDYGMGN---IHSCLKAVSLYTKDFVFTSDP-------------------ETI--ENSKALILPGDGHFDKAMENLN 57 (210)
T ss_pred EEEEECCCch---HHHHHHHHHHcCCeEEEECCH-------------------HHh--ccCCEEEECCCCchHHHHHHHH
Confidence 4555444333 344556666677766655321 222 3589999999742 122232
Q ss_pred cCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 240 KSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 240 ~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
...+..+|+++.++++++.+||.|.. +|+++
T Consensus 58 -~~gl~~~i~~~~~~~~pilGiC~G~Q-~l~~~ 88 (210)
T PRK14004 58 -STGLRSTIDKHVESGKPLFGICIGFQ-ILFES 88 (210)
T ss_pred -HcCcHHHHHHHHHcCCCEEEECHhHH-HHHHh
Confidence 23688899999999999999999999 89885
No 139
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=96.57 E-value=0.012 Score=48.31 Aligned_cols=84 Identities=19% Similarity=0.198 Sum_probs=54.9
Q ss_pred EEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhh--c
Q 023800 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA--K 240 (277)
Q Consensus 163 V~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~--~ 240 (277)
|+|+=|..-+..++ ..+|++.|.++.++... +++ .++|.||+||+......+. .
T Consensus 2 i~iidyg~gN~~s~---~~al~~~g~~~~~v~~~-------------------~~l--~~~D~lIlPG~g~~~~~~~~L~ 57 (192)
T PRK13142 2 IVIVDYGLGNISNV---KRAIEHLGYEVVVSNTS-------------------KII--DQAETIILPGVGHFKDAMSEIK 57 (192)
T ss_pred EEEEEcCCccHHHH---HHHHHHcCCCEEEEeCH-------------------HHh--ccCCEEEECCCCCHHHHHHHHH
Confidence 67777776666554 55666678877766321 222 3589999999732122111 1
Q ss_pred CHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCC
Q 023800 241 SKKLVNMLKKQKESNRPYGAICASPALVLEPHG 273 (277)
Q Consensus 241 ~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aG 273 (277)
...+.+.|++ +.++++.+||.|-. +|++..
T Consensus 58 ~~gl~~~i~~--~~g~PvlGIClGmQ-lL~~~~ 87 (192)
T PRK13142 58 RLNLNAILAK--NTDKKMIGICLGMQ-LMYEHS 87 (192)
T ss_pred HCCcHHHHHH--hCCCeEEEECHHHH-HHhhhc
Confidence 2246777777 57899999999999 898753
No 140
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=96.51 E-value=0.0063 Score=56.86 Aligned_cols=70 Identities=26% Similarity=0.404 Sum_probs=48.7
Q ss_pred HHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccc--hhccccChHHHHHHHHHHhCCCEEEEEc
Q 023800 7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPG--ATNLKESEVLESIVKKQASDGRLYAAIC 81 (277)
Q Consensus 7 ~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~--~~~~~~~~~~~~~l~~~~~~g~~i~aiC 81 (277)
++.|++.|.++..+++-.+. .+.+++.. ||.+. ...+..+..+.+.|+++.++|++|.|||
T Consensus 264 ~~~L~~~g~~~~~~~~~~~~--------------~l~~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~g~~i~aiC 329 (451)
T PRK01077 264 LELLRAAGAELVFFSPLADE--------------ALPDCDGLYLGGGYPELFAAELAANTSMRASIRAAAAAGKPIYAEC 329 (451)
T ss_pred HHHHHHCCCEEEEeCCcCCC--------------CCCCCCEEEeCCCchhhHHHHHhhCchhHHHHHHHHHcCCCEEEEc
Confidence 46677777888777763211 12222211 67533 3446677889999999999999999999
Q ss_pred hhHHHHHHHc
Q 023800 82 VFLAVALGSW 91 (277)
Q Consensus 82 ~g~~~~La~a 91 (277)
.|.+ +|++.
T Consensus 330 gG~~-~L~~~ 338 (451)
T PRK01077 330 GGLM-YLGES 338 (451)
T ss_pred HHHH-HHHhh
Confidence 9998 78765
No 141
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=96.48 E-value=0.0063 Score=49.97 Aligned_cols=68 Identities=15% Similarity=0.092 Sum_probs=45.1
Q ss_pred HHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccc-hhccccChHHHHHHHHHHhCCCEEEEEch
Q 023800 7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPG-ATNLKESEVLESIVKKQASDGRLYAAICV 82 (277)
Q Consensus 7 ~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~-~~~~~~~~~~~~~l~~~~~~g~~i~aiC~ 82 (277)
++.|++.|+++..++... .+++++.. ||... .+.+..+..+.++++++.++|++|.+||.
T Consensus 17 ~~~l~~~g~~~~~~~~~~----------------~l~~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~ 80 (189)
T PRK13525 17 LAALEALGAEAVEVRRPE----------------DLDEIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGTCA 80 (189)
T ss_pred HHHHHHCCCEEEEeCChh----------------HhccCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEECH
Confidence 456777788777776321 12222221 65311 12234456678999999999999999999
Q ss_pred hHHHHHHHc
Q 023800 83 FLAVALGSW 91 (277)
Q Consensus 83 g~~~~La~a 91 (277)
|.. +|+.+
T Consensus 81 G~Q-lL~~~ 88 (189)
T PRK13525 81 GMI-LLAKE 88 (189)
T ss_pred HHH-HHHhh
Confidence 999 88874
No 142
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=96.42 E-value=0.0051 Score=51.00 Aligned_cols=72 Identities=18% Similarity=0.224 Sum_probs=48.5
Q ss_pred hhHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchhccccChHHHHHHHHHHhCCCEEEEE
Q 023800 4 VITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLKESEVLESIVKKQASDGRLYAAI 80 (277)
Q Consensus 4 ~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~ai 80 (277)
....+.|++.|+++.+++.. ..+++.+.. ||......+...+.+.++++++.++++++.+|
T Consensus 14 ~~~~~~l~~~G~~~~~~~~~----------------~~~~~~d~iii~G~~~~~~~~~~~~~~~~~i~~~~~~~~PilgI 77 (200)
T PRK13143 14 RSVSKALERAGAEVVITSDP----------------EEILDADGIVLPGVGAFGAAMENLSPLRDVILEAARSGKPFLGI 77 (200)
T ss_pred HHHHHHHHHCCCeEEEECCH----------------HHHccCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 34567888899998887521 111222221 42111222445567889999999999999999
Q ss_pred chhHHHHHHHcC
Q 023800 81 CVFLAVALGSWG 92 (277)
Q Consensus 81 C~g~~~~La~aG 92 (277)
|.|.. +|+++.
T Consensus 78 C~G~q-~l~~~~ 88 (200)
T PRK13143 78 CLGMQ-LLFESS 88 (200)
T ss_pred CHHHH-HHhhhh
Confidence 99999 999864
No 143
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=96.39 E-value=0.0091 Score=55.88 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=33.1
Q ss_pred CCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 221 ~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
.++|.||+|||.. ...-.-...+.++|+++ |++|.+||.|-. +|++.
T Consensus 35 ~~~D~lILPGG~~-~~~~~l~~~l~~~i~~~---g~pvlGICgG~Q-mLg~~ 81 (476)
T PRK06278 35 KDLDGLIIPGGSL-VESGSLTDELKKEILNF---DGYIIGICSGFQ-ILSEK 81 (476)
T ss_pred ccCCEEEECCCch-hhcchHHHHHHHHHHHc---CCeEEEEcHHHH-hcccc
Confidence 4689999999841 11100124566666655 899999999999 89876
No 144
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=96.37 E-value=0.0095 Score=49.12 Aligned_cols=74 Identities=19% Similarity=0.178 Sum_probs=47.4
Q ss_pred HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccCCCccchhcccc--ChHHHHHHHHHHhCCCEEEEEchh
Q 023800 6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACGMPGATNLKE--SEVLESIVKKQASDGRLYAAICVF 83 (277)
Q Consensus 6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~gG~~~~~~~~~--~~~~~~~l~~~~~~g~~i~aiC~g 83 (277)
....+++.|+++.++++..+ +....++-+. ||......+.. +..+.+.|+++.++|++|.+||.|
T Consensus 15 l~~~~~~~G~~~~~~~~~~~--~~~~d~lilp-----------Gg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvlgiC~G 81 (194)
T cd01750 15 LDPLAREPGVDVRYVEVPEG--LGDADLIILP-----------GSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGICGG 81 (194)
T ss_pred HHHHHhcCCceEEEEeCCCC--CCCCCEEEEC-----------CCcchHHHHHHHHHcCHHHHHHHHHHCCCcEEEECHH
Confidence 34556677899999987652 1111111111 44311222222 456889999999999999999999
Q ss_pred HHHHHHHcCC
Q 023800 84 LAVALGSWGL 93 (277)
Q Consensus 84 ~~~~La~aGl 93 (277)
.. +|++.-.
T Consensus 82 ~q-lL~~~~~ 90 (194)
T cd01750 82 YQ-MLGKYIV 90 (194)
T ss_pred HH-Hhhhhcc
Confidence 99 8987653
No 145
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=96.37 E-value=0.068 Score=50.39 Aligned_cols=147 Identities=18% Similarity=0.263 Sum_probs=81.5
Q ss_pred CCCeEcCCCCCCHHHHHHHHHHHhcChhHHHHHhhcccccccCCCchhhcccCcccccc---CCCCeEEEEe-cCCCchh
Q 023800 99 DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTF---DNSPQILVPI-ANGSEEM 174 (277)
Q Consensus 99 dg~~iT~~g~~~~~~~a~~li~~l~g~~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~kV~ill-~~g~~~~ 174 (277)
..++|.+....+..+.=+.+-++ ...+.+.+.+.++....+ +.+-..+...+ .+..+|+++- |.. ..-
T Consensus 232 ~~~vi~~~d~~~iY~vPl~l~~q----~~~~~i~~~l~l~~~~~~---~~~W~~~~~~~~~~~~~v~IalVGKY~~-~~d 303 (525)
T TIGR00337 232 EEAVINAHDVSSIYEVPLLLLKQ----GLDDYLCRRLNLNCDEAD---LSEWEELVEKFINPKHEVTIGIVGKYVE-LKD 303 (525)
T ss_pred HHHEEEcCCCccHhhhhHHHHHC----ChHHHHHHHhCCCCCCCc---HHHHHHHHHHhhCCCCCcEEEEEeCCcC-CHH
Confidence 44688887777644444443333 356667777766531111 11111111111 2346777765 222 222
Q ss_pred hHHHHHHHHHhCCC----eEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHH
Q 023800 175 EAVIIIDILRRAKA----NVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKK 250 (277)
Q Consensus 175 e~~~~~~~l~~a~~----~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~ 250 (277)
.+....+.|..++. .+.+...+.. .+.. . ..+. ..++|.|++|||.+.. ..+.....++.
T Consensus 304 aY~SI~eAL~~ag~~~~~~V~~~~i~se-~i~~--------~-~~~~--L~~~dGIiLpGG~G~~----~~~g~i~ai~~ 367 (525)
T TIGR00337 304 SYLSVIEALKHAGAKLDTKVNIKWIDSE-DLEE--------E-GAEF--LKGVDGILVPGGFGER----GVEGKILAIKY 367 (525)
T ss_pred HHHHHHHHHHhCccccCCEEEEEEecHH-Hhhh--------h-hhhh--hcCCCEEEeCCCCCCh----hhcChHHHHHH
Confidence 35788899999886 3333322221 1100 0 0011 2468999999997422 23445567787
Q ss_pred HHHcCCcEEEEchhhHHhhh
Q 023800 251 QKESNRPYGAICASPALVLE 270 (277)
Q Consensus 251 ~~~~~~~i~aiC~G~~~lLa 270 (277)
+.+++.|+.+||-|-. +++
T Consensus 368 a~e~~iP~LGIClG~Q-ll~ 386 (525)
T TIGR00337 368 ARENNIPFLGICLGMQ-LAV 386 (525)
T ss_pred HHHcCCCEEEEcHHHH-HHH
Confidence 8889999999999998 664
No 146
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=96.34 E-value=0.01 Score=49.09 Aligned_cols=71 Identities=20% Similarity=0.219 Sum_probs=46.4
Q ss_pred HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccc-hhccccChHHHHHHHHHHhCCCEEEEEc
Q 023800 6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPG-ATNLKESEVLESIVKKQASDGRLYAAIC 81 (277)
Q Consensus 6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~-~~~~~~~~~~~~~l~~~~~~g~~i~aiC 81 (277)
..+.|++.|+++++...... ..+.+.+.. ||... ...+..+..+.++|+++.++++++.+||
T Consensus 19 ~~~~l~~~g~~~~~~~~~~~--------------~~l~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC 84 (200)
T PRK13527 19 LKRALDELGIDGEVVEVRRP--------------GDLPDCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTC 84 (200)
T ss_pred HHHHHHhcCCCeEEEEeCCh--------------HHhccCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEEC
Confidence 34566777887777766421 112222221 65321 1123344568999999999999999999
Q ss_pred hhHHHHHHHc
Q 023800 82 VFLAVALGSW 91 (277)
Q Consensus 82 ~g~~~~La~a 91 (277)
.|.. +|+.+
T Consensus 85 ~G~Q-ll~~~ 93 (200)
T PRK13527 85 AGLI-LLAKE 93 (200)
T ss_pred HHHH-HHHhh
Confidence 9999 89987
No 147
>PLN02327 CTP synthase
Probab=96.17 E-value=0.099 Score=49.52 Aligned_cols=156 Identities=14% Similarity=0.168 Sum_probs=84.1
Q ss_pred CCCeEcCCCCCCHHHHHHHHHHHhcChhHHHHHhhcccccc-cCCCchhhcccCccccc---cCCCCeEEEEecCCCchh
Q 023800 99 DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRA-NHGDEFTIAEFNPVQWT---FDNSPQILVPIANGSEEM 174 (277)
Q Consensus 99 dg~~iT~~g~~~~~~~a~~li~~l~g~~~a~~v~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~kV~ill~~g~~~~ 174 (277)
-.++|.+....+..+.=+.+-++ ...+.+.+.+.++. ....+ +.+-..+... .....+|+++- .-....
T Consensus 238 ~~~Vi~~~d~~~iY~vPl~l~~q----~l~~~i~~~l~l~~~~~~~~--~~~W~~~~~~~~~~~~~v~IalVG-KY~~l~ 310 (557)
T PLN02327 238 AENILNLHDVSNIWHVPLLLRDQ----KAHEAILKVLNLLSVAREPD--LEEWTARAESCDNLTEPVRIAMVG-KYTGLS 310 (557)
T ss_pred HHHEEEcCCCchHhhhhHHHHHC----CcHHHHHHHcCCCCCCCCCC--hHHHHHHHHHHhCCCCceEEEEEe-cccCCc
Confidence 44688887776544444443333 45666777776652 11111 1222211111 22345666664 222222
Q ss_pred -hHHHHHHHHHhCC----CeEEEEeeCCCceEEcccCcEEEe---CcchhhhccCCccEEEEcCCcchHHhhhcCHHHHH
Q 023800 175 -EAVIIIDILRRAK----ANVVVASVADKLEILASCQVKLVA---DMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVN 246 (277)
Q Consensus 175 -e~~~~~~~l~~a~----~~v~~vs~~~~~~v~~~~g~~i~~---~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~ 246 (277)
.+....++|+.|+ .++.+...+.. .+... +..-.| +..++. ..++|.|++|||.+. +.....+.
T Consensus 311 DAY~Si~eAL~hA~~~~~~~v~i~wI~se-~l~~~-~~~~~~~~y~~~~~~--L~~~DGIvvpGGfG~----~~~~G~i~ 382 (557)
T PLN02327 311 DSYLSVLKALLHASVACSRKLVIDWVAAS-DLEDE-TAKETPDAYAAAWKL--LKGADGILVPGGFGD----RGVEGKIL 382 (557)
T ss_pred HhHHHHHHHHHHHHHHcCCeeEEEEEchh-hcCCc-ccccccchhhhhHHh--hccCCEEEeCCCCCC----cccccHHH
Confidence 2667888888775 45555544433 22111 100000 112232 357999999999642 12334466
Q ss_pred HHHHHHHcCCcEEEEchhhHHhhh
Q 023800 247 MLKKQKESNRPYGAICASPALVLE 270 (277)
Q Consensus 247 ~l~~~~~~~~~i~aiC~G~~~lLa 270 (277)
.++.+.++++|+.+||-|-. +++
T Consensus 383 ai~~are~~iP~LGIClGmQ-l~v 405 (557)
T PLN02327 383 AAKYARENKVPYLGICLGMQ-IAV 405 (557)
T ss_pred HHHHHHHcCCCEEEEcHHHH-HHH
Confidence 77878889999999999998 564
No 148
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=96.12 E-value=0.0086 Score=51.61 Aligned_cols=89 Identities=19% Similarity=0.253 Sum_probs=53.5
Q ss_pred HHHHHHhCCCeEEEEeeCC---C-ceeecCCCCEEecCccccccccCCCccchhccccChHHHHHHHHHHhC-CCEEEEE
Q 023800 6 TIDVLRRSGADVVVASVEK---Q-LRVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQASD-GRLYAAI 80 (277)
Q Consensus 6 ~~~~l~~~~~~v~~~s~~~---~-~~v~~~~g~~v~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~l~~~~~~-g~~i~ai 80 (277)
.+..|+.+|+++..+..+. + ..+....++.+.=-.+..|... +|..-+..+..++.+.+-|++|.++ |+++.+|
T Consensus 18 ~~~A~~~aG~~~~~v~~~dl~~~~~~l~~~~~lvipGGFS~gD~l~-sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGI 96 (259)
T PF13507_consen 18 TAAAFENAGFEPEIVHINDLLSGESDLDDFDGLVIPGGFSYGDYLR-SGAIAAARLLFNSPLMDAIREFLERPGGFVLGI 96 (259)
T ss_dssp HHHHHHCTT-EEEEEECCHHHTTS--GCC-SEEEE-EE-GGGGTTS-TTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEE
T ss_pred HHHHHHHcCCCceEEEEEecccccCchhhCcEEEECCccCccccch-HHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEE
Confidence 4677889999999987653 0 1111112222221111111111 2311122345567889999999999 9999999
Q ss_pred chhHHHHHHHcCCCCC
Q 023800 81 CVFLAVALGSWGLLKG 96 (277)
Q Consensus 81 C~g~~~~La~aGll~g 96 (277)
|.|-. +|.++|||.+
T Consensus 97 cNGfQ-iL~~~Gllp~ 111 (259)
T PF13507_consen 97 CNGFQ-ILVELGLLPG 111 (259)
T ss_dssp CHHHH-HHCCCCCSTT
T ss_pred chHhH-HHHHhCcCCC
Confidence 99999 9999999987
No 149
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=96.12 E-value=0.039 Score=47.51 Aligned_cols=51 Identities=24% Similarity=0.234 Sum_probs=37.2
Q ss_pred CCccEEEEcCCcchHHh-------------hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 221 LSYDLIVLPGGLGGAQA-------------FAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 221 ~~~D~livpGG~~~~~~-------------~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
+.+|.|+++||..+.+. ...+....++++.+.+++++|.+||-|.. +|+.+
T Consensus 60 ~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Q-llnva 123 (254)
T PRK11366 60 PKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQ-ELVVA 123 (254)
T ss_pred HhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHH-HHHHH
Confidence 35899999998422210 01123457899999999999999999999 78764
No 150
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=96.08 E-value=0.048 Score=46.25 Aligned_cols=95 Identities=13% Similarity=0.082 Sum_probs=62.2
Q ss_pred CCeEEEEecCC--Cchhh-HHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcch-H
Q 023800 160 SPQILVPIANG--SEEME-AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG-A 235 (277)
Q Consensus 160 ~~kV~ill~~g--~~~~e-~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~-~ 235 (277)
.+||+++-.-. -+..+ +....++|+..|++++.+-... ...+.+ ...|+|+|+||... .
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~---------------d~~~~l--~~ad~I~v~GGnt~~l 93 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVA---------------DPVAAI--ENAEAIFVGGGNTFQL 93 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccch---------------hhHHHH--hcCCEEEECCccHHHH
Confidence 36788876543 12223 3457788888899876663211 111222 46799999999631 1
Q ss_pred HhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 236 QAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
........+.+.|+++.++|+++++.|.|+. +++..
T Consensus 94 ~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAi-i~~~~ 129 (233)
T PRK05282 94 LKQLYERGLLAPIREAVKNGTPYIGWSAGAN-VAGPT 129 (233)
T ss_pred HHHHHHCCcHHHHHHHHHCCCEEEEECHHHH-hhhcc
Confidence 1122344678889999999999999999999 77764
No 151
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=96.01 E-value=0.035 Score=46.29 Aligned_cols=35 Identities=29% Similarity=0.377 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHhCCCEEEEEchhHHHHHHHcCCCCC
Q 023800 61 EVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKG 96 (277)
Q Consensus 61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g 96 (277)
..+.+-++++.++|+++.+||.|-. +|.++|||.|
T Consensus 68 ~~v~~~v~~~a~~g~~vLGICNGfQ-iL~e~gLlPG 102 (231)
T COG0047 68 APVMDEVREFAEKGKPVLGICNGFQ-ILSEAGLLPG 102 (231)
T ss_pred HHHHHHHHHHHHCCCeEEEEcchhH-HHHHcCcCCc
Confidence 7788889999999999999999999 9999999997
No 152
>PRK08250 glutamine amidotransferase; Provisional
Probab=96.00 E-value=0.026 Score=48.01 Aligned_cols=74 Identities=11% Similarity=0.170 Sum_probs=46.4
Q ss_pred HHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchhc-cccC-----hHHHHHHHHHHhCCCEE
Q 023800 7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATN-LKES-----EVLESIVKKQASDGRLY 77 (277)
Q Consensus 7 ~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~~-~~~~-----~~~~~~l~~~~~~g~~i 77 (277)
.+.+++.|+++.+.....+.++ ++ .+++++.. ||..+... ..+. ....+||+++.++++++
T Consensus 18 ~~~~~~~g~~~~~~~~~~g~~~---------p~-~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~Pv 87 (235)
T PRK08250 18 LKWAENRGYDISYSRVYAGEAL---------PE-NADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAV 87 (235)
T ss_pred HHHHHHCCCeEEEEEccCCCCC---------CC-CccccCEEEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCE
Confidence 4566788888888664432211 10 12233322 66322211 1112 46789999999999999
Q ss_pred EEEchhHHHHHHHc
Q 023800 78 AAICVFLAVALGSW 91 (277)
Q Consensus 78 ~aiC~g~~~~La~a 91 (277)
.+||.|.. +|+.+
T Consensus 88 lGIC~G~Q-lla~a 100 (235)
T PRK08250 88 IGVCLGAQ-LIGEA 100 (235)
T ss_pred EEEChhHH-HHHHH
Confidence 99999999 89886
No 153
>PLN02347 GMP synthetase
Probab=95.93 E-value=0.043 Score=52.31 Aligned_cols=90 Identities=16% Similarity=0.217 Sum_probs=54.8
Q ss_pred eEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcC
Q 023800 162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKS 241 (277)
Q Consensus 162 kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~ 241 (277)
+|+|+=+-.-. .......+++.|..+.++..+. ..+++...++|.||++||..... ....
T Consensus 12 ~IlIID~G~~~---t~~I~r~lrelgv~~~v~p~~~----------------~~~~i~~~~~dgIILsGGP~sv~-~~~~ 71 (536)
T PLN02347 12 VVLILDYGSQY---THLITRRVRELGVYSLLLSGTA----------------SLDRIASLNPRVVILSGGPHSVH-VEGA 71 (536)
T ss_pred EEEEEECCCcH---HHHHHHHHHHCCCeEEEEECCC----------------CHHHHhcCCCCEEEECCCCCccc-ccCC
Confidence 56665433222 2345677888898887775442 23333323689999999853222 1122
Q ss_pred HHHH-HHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 242 KKLV-NMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 242 ~~~~-~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
+.+. .+++...+.++||.+||-|.. +|+.+
T Consensus 72 p~~~~~i~~~~~~~~iPILGIClG~Q-lLa~a 102 (536)
T PLN02347 72 PTVPEGFFDYCRERGVPVLGICYGMQ-LIVQK 102 (536)
T ss_pred chhhHHHHHHHHhcCCcEEEECHHHH-HHHHH
Confidence 2222 233334457899999999999 89874
No 154
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=95.90 E-value=0.036 Score=50.77 Aligned_cols=75 Identities=20% Similarity=0.208 Sum_probs=54.3
Q ss_pred HHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCC
Q 023800 177 VIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNR 256 (277)
Q Consensus 177 ~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~ 256 (277)
..++..|++.|+++.++..+. ..+++...++|.|++.||...+. ..+...+.+++.. .++
T Consensus 252 ~nIlr~L~~~G~~v~VvP~~~----------------~~~ei~~~~pDGIiLSnGPGDP~---~~~~~ie~ik~l~-~~i 311 (415)
T PLN02771 252 HNILRRLASYGCKITVVPSTW----------------PASEALKMKPDGVLFSNGPGDPS---AVPYAVETVKELL-GKV 311 (415)
T ss_pred HHHHHHHHHcCCeEEEECCCC----------------CHHHHhhcCCCEEEEcCCCCChh---HhhHHHHHHHHHH-hCC
Confidence 667788899999998885542 12333234689999999864443 3455667777766 478
Q ss_pred cEEEEchhhHHhhhhC
Q 023800 257 PYGAICASPALVLEPH 272 (277)
Q Consensus 257 ~i~aiC~G~~~lLa~a 272 (277)
+|.+||-|.. +||.+
T Consensus 312 PIlGICLGhQ-lLa~A 326 (415)
T PLN02771 312 PVFGICMGHQ-LLGQA 326 (415)
T ss_pred CEEEEcHHHH-HHHHh
Confidence 9999999999 89875
No 155
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=95.87 E-value=0.013 Score=55.20 Aligned_cols=50 Identities=14% Similarity=0.224 Sum_probs=40.1
Q ss_pred CCccEEEEcCCcchHHhhh--cCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800 221 LSYDLIVLPGGLGGAQAFA--KSKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (277)
Q Consensus 221 ~~~D~livpGG~~~~~~~~--~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~ 271 (277)
+++|+|++|||......+. .+..+.+.|+++.++|++|.++|.|-. +|.+
T Consensus 283 ~~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG~q-~Lg~ 334 (475)
T TIGR00313 283 TGCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGICGGYQ-MLGK 334 (475)
T ss_pred ccCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCCcEEEEcHHHH-Hhhh
Confidence 3689999999974333322 345678899999999999999999999 7987
No 156
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=95.82 E-value=0.05 Score=51.83 Aligned_cols=89 Identities=20% Similarity=0.222 Sum_probs=57.0
Q ss_pred EecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHH
Q 023800 166 PIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLV 245 (277)
Q Consensus 166 ll~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~ 245 (277)
++.|.++... .-..+.|+..|+++.++..+- + .+..++++...++|.||+-||...+.+....
T Consensus 5 LiIDn~dsft-~nl~~~lr~~g~~v~V~~~~~--~----------~~~~~~~l~~~~~~~IIlSpGPg~p~d~~~~---- 67 (531)
T PRK09522 5 LLLDNIDSFT-YNLADQLRSNGHNVVIYRNHI--P----------AQTLIERLATMSNPVLMLSPGPGVPSEAGCM---- 67 (531)
T ss_pred EEEeCCChHH-HHHHHHHHHCCCCEEEEECCC--C----------CccCHHHHHhcCcCEEEEcCCCCChhhCCCC----
Confidence 3345544444 447788899999998887542 1 1223444433457899998886555433222
Q ss_pred HHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 246 NMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 246 ~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
.++.+..+.++||.+||-|.. +|+.+
T Consensus 68 ~~i~~~~~~~iPILGIClG~Q-lLa~a 93 (531)
T PRK09522 68 PELLTRLRGKLPIIGICLGHQ-AIVEA 93 (531)
T ss_pred HHHHHHHhcCCCEEEEcHHHH-HHHHh
Confidence 333333456899999999999 89874
No 157
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=95.74 E-value=0.28 Score=45.47 Aligned_cols=184 Identities=16% Similarity=0.217 Sum_probs=105.6
Q ss_pred cChHHHHHHHHHHh---CCCEEEEEchhHHHHHHHcCCCCCCC-------------------------------------
Q 023800 59 ESEVLESIVKKQAS---DGRLYAAICVFLAVALGSWGLLKGLK------------------------------------- 98 (277)
Q Consensus 59 ~~~~~~~~l~~~~~---~g~~i~aiC~g~~~~La~aGll~g~~------------------------------------- 98 (277)
++-.+++-+|++.. ....+..-|+-.- .++.+|=++.|.
T Consensus 148 EslpFlEAiRQ~~~e~g~~n~~fiH~tlvp-yi~~~gE~KTKPTQhSVkeLR~iGI~PDiii~Rs~~~l~~~~~~KIAlf 226 (533)
T COG0504 148 ESLPFLEAIRQLRLELGRENVLFIHVTLVP-YIAAAGELKTKPTQHSVKELRSIGIQPDILICRSERPLPEEERRKIALF 226 (533)
T ss_pred cccHHHHHHHHHHhhhCcccEEEEEEecce-eecccCccCCCCchHHHHHHHhcCCCcceEEEecCCCCCHHHHHHHHHh
Confidence 34456666666652 2447777788776 788899888887
Q ss_pred ----CCCeEcCCCCCCHHHHHHHHHHHhcChhHHHHHhhcccccccCCCchhhcccCccccccCCC---CeEEEEecCCC
Q 023800 99 ----DGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTFDNS---PQILVPIANGS 171 (277)
Q Consensus 99 ----dg~~iT~~g~~~~~~~a~~li~~l~g~~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kV~ill~~g~ 171 (277)
...+|++-...+..+.=+.+ ....+.+.+.+.+.++..+. ++.+-..+...+..+ .+|+++= --.
T Consensus 227 c~V~~~~Vi~~~Dv~siY~vPl~l----~~qgl~~~i~~~l~l~~~~~---dl~~W~~~v~~i~~~~~~v~IalVG-KYv 298 (533)
T COG0504 227 CNVPEEAVISAPDVESIYEVPLLL----EKQGLDDYILERLNLNAPEP---DLSEWKDLVDKIKNPKKEVTIALVG-KYV 298 (533)
T ss_pred cCCCHHHeEecccHHHHHHhHHHH----HHcchHHHHHHHhCCCCCCc---chHHHHHHHHHhcCCCCceEEEEEE-CCc
Confidence 33466665555433333333 33346666777777751111 111111111112111 3455543 223
Q ss_pred chhh-HHHHHHHHHhCCC----eEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHH
Q 023800 172 EEME-AVIIIDILRRAKA----NVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVN 246 (277)
Q Consensus 172 ~~~e-~~~~~~~l~~a~~----~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~ 246 (277)
+..| +....++|+.+|+ ++.+...+.. .+.... ...+.. .+|.|+||||++ .+--+.-+.
T Consensus 299 ~l~DaY~Sv~EAL~hag~~~~~~v~i~wIdse-~le~~~------~~~~~~----~~dgIlVPGGFG----~RG~eGkI~ 363 (533)
T COG0504 299 ELPDAYKSVIEALKHAGIALGVKVNIKWIDSE-DLEEEN------AAELEK----LVDGILVPGGFG----YRGVEGKIA 363 (533)
T ss_pred CchhHHHHHHHHHHhhhhhcCCceeeEEEccc-cccccc------hhhhhh----cCCEEEeCCCCC----cCchHHHHH
Confidence 3333 6778899998874 4555444433 111110 001111 289999999985 234566777
Q ss_pred HHHHHHHcCCcEEEEchhhH
Q 023800 247 MLKKQKESNRPYGAICASPA 266 (277)
Q Consensus 247 ~l~~~~~~~~~i~aiC~G~~ 266 (277)
.++.+.+++.|..+||-|-.
T Consensus 364 Ai~yAREn~iP~lGIClGmQ 383 (533)
T COG0504 364 AIRYARENNIPFLGICLGMQ 383 (533)
T ss_pred HHHHHHhcCCCEEEEchhHH
Confidence 88888899999999999988
No 158
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=95.70 E-value=0.086 Score=42.90 Aligned_cols=87 Identities=16% Similarity=0.304 Sum_probs=58.4
Q ss_pred EEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHH
Q 023800 165 VPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKL 244 (277)
Q Consensus 165 ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~ 244 (277)
|++.|+++... .-..+.|+..|.++.++-.+. .+...+...++|.|+|.-|.+.+. +....
T Consensus 4 IL~IDNyDSFt-yNLv~yl~~lg~~v~V~rnd~---------------~~~~~~~~~~pd~iviSPGPG~P~---d~G~~ 64 (191)
T COG0512 4 ILLIDNYDSFT-YNLVQYLRELGAEVTVVRNDD---------------ISLELIEALKPDAIVISPGPGTPK---DAGIS 64 (191)
T ss_pred EEEEECccchH-HHHHHHHHHcCCceEEEECCc---------------cCHHHHhhcCCCEEEEcCCCCChH---HcchH
Confidence 34456655444 457788899998888876552 112233335689999966644344 34456
Q ss_pred HHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 245 VNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 245 ~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
.+.|+++ ....+|.+||-|-. .++++
T Consensus 65 ~~~i~~~-~~~~PiLGVCLGHQ-ai~~~ 90 (191)
T COG0512 65 LELIRRF-AGRIPILGVCLGHQ-AIAEA 90 (191)
T ss_pred HHHHHHh-cCCCCEEEECccHH-HHHHH
Confidence 7788877 66789999999999 88764
No 159
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=95.65 E-value=0.018 Score=49.01 Aligned_cols=46 Identities=26% Similarity=0.411 Sum_probs=36.9
Q ss_pred CCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (277)
Q Consensus 221 ~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~ 271 (277)
.++|.|+++||.. . ...+....+++...+.++++.+||.|.. +|+.
T Consensus 54 ~~~dgivl~GG~~-~---~~~~~~~~~i~~~~~~~~PvlGIClG~Q-~l~~ 99 (235)
T cd01746 54 KGADGILVPGGFG-I---RGVEGKILAIKYARENNIPFLGICLGMQ-LAVI 99 (235)
T ss_pred ccCCEEEECCCCC-C---cchhhHHHHHHHHHHCCceEEEEEhHHH-HHHH
Confidence 4689999999863 2 2344667889999999999999999999 6753
No 160
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=95.55 E-value=0.016 Score=48.12 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=46.2
Q ss_pred hhHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchhcc--ccChHHHHHHHHHHhCCCEEE
Q 023800 4 VITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNL--KESEVLESIVKKQASDGRLYA 78 (277)
Q Consensus 4 ~~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~~~--~~~~~~~~~l~~~~~~g~~i~ 78 (277)
....+.|++.|.++.++.... .+++.+.. ||....... ...+.+.++|+++.++++++.
T Consensus 13 ~~i~~~l~~~G~~v~~~~~~~----------------~l~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pvl 76 (205)
T PRK13141 13 RSVEKALERLGAEAVITSDPE----------------EILAADGVILPGVGAFPDAMANLRERGLDEVIKEAVASGKPLL 76 (205)
T ss_pred HHHHHHHHHCCCeEEEECCHH----------------HhccCCEEEECCCCchHHHHHHHHHcChHHHHHHHHHCCCcEE
Confidence 456788888899888864221 11222111 431111111 122357899999999999999
Q ss_pred EEchhHHHHHHHc
Q 023800 79 AICVFLAVALGSW 91 (277)
Q Consensus 79 aiC~g~~~~La~a 91 (277)
+||.|.+ +|++.
T Consensus 77 GIC~G~Q-ll~~~ 88 (205)
T PRK13141 77 GICLGMQ-LLFES 88 (205)
T ss_pred EECHHHH-Hhhhc
Confidence 9999999 99986
No 161
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=95.43 E-value=0.05 Score=47.37 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=47.0
Q ss_pred HHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCH---HHHHHHHHHHHc
Q 023800 178 IIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSK---KLVNMLKKQKES 254 (277)
Q Consensus 178 ~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~---~~~~~l~~~~~~ 254 (277)
..++.+..+|.+|..+-.+.. ...+.+. .+.+|.|++|||....+.....+ .+.++..+..++
T Consensus 24 ~Yv~~l~~aG~~vvpi~~~~~-------------~~~l~~~-l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~ 89 (273)
T cd01747 24 SYVKFLESAGARVVPIWINES-------------EEYYDKL-FKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDA 89 (273)
T ss_pred HHHHHHHHCCCeEEEEEeCCc-------------HHHHHHH-HhhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhc
Confidence 456777888888766644311 1223331 24689999999853222111222 333444444444
Q ss_pred C--CcEEEEchhhHHhhhh
Q 023800 255 N--RPYGAICASPALVLEP 271 (277)
Q Consensus 255 ~--~~i~aiC~G~~~lLa~ 271 (277)
| .||.++|-|.. +|+.
T Consensus 90 g~~~Pv~GiClG~Q-lL~~ 107 (273)
T cd01747 90 GDYFPVWGTCLGFE-LLTY 107 (273)
T ss_pred CCCCcEEEEcHHHH-HHHH
Confidence 4 79999999999 7876
No 162
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=95.42 E-value=0.03 Score=45.65 Aligned_cols=70 Identities=17% Similarity=0.152 Sum_probs=47.8
Q ss_pred HHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccc-hhccccChHHHHHHHHHHhCCCEEEEEch
Q 023800 7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPG-ATNLKESEVLESIVKKQASDGRLYAAICV 82 (277)
Q Consensus 7 ~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~-~~~~~~~~~~~~~l~~~~~~g~~i~aiC~ 82 (277)
.+.|++.|+++..++... . +++++-. ||... ......+..+.++|+++.++|+++.+||.
T Consensus 14 ~~~l~~~g~~v~~v~~~~--~--------------l~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlGiC~ 77 (183)
T cd01749 14 IRALERLGVEVIEVRTPE--D--------------LEGIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGTCA 77 (183)
T ss_pred HHHHHHCCCeEEEECCHH--H--------------hccCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEEECH
Confidence 477888899988888742 1 2222221 55211 12223445678999999999999999999
Q ss_pred hHHHHHHHcCC
Q 023800 83 FLAVALGSWGL 93 (277)
Q Consensus 83 g~~~~La~aGl 93 (277)
|.. +|+++--
T Consensus 78 G~q-lL~~~~~ 87 (183)
T cd01749 78 GLI-LLAKEVE 87 (183)
T ss_pred HHH-HHHHHhc
Confidence 999 8987643
No 163
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=95.28 E-value=0.16 Score=41.66 Aligned_cols=97 Identities=19% Similarity=0.216 Sum_probs=59.9
Q ss_pred CCCeEEEEecCCCch---hhHHHHHHHHH----hCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCC
Q 023800 159 NSPQILVPIANGSEE---MEAVIIIDILR----RAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGG 231 (277)
Q Consensus 159 ~~~kV~ill~~g~~~---~e~~~~~~~l~----~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG 231 (277)
+.+|+++++.+--+. ..+.+..++|. .-|-+|.+.-.-.+ --|+ .+| .++||.++|.|.
T Consensus 3 ~~kr~Alf~at~dsefvk~~yGgy~nvfvsllg~ege~wd~frV~~g----------efP~--~~D--l~ky~gfvIsGS 68 (245)
T KOG3179|consen 3 EQKRIALFLATPDSEFVKKAYGGYFNVFVSLLGDEGEQWDLFRVIDG----------EFPQ--EED--LEKYDGFVISGS 68 (245)
T ss_pred cceeEEEEecCCchhhhhhhhcCHHHHHHHHhcccCceeEEEEEecC----------CCCC--hhh--hhhhceEEEeCC
Confidence 347899988753111 11233444443 34556665543222 0111 233 357999999997
Q ss_pred cchHHhhhcC---HHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 232 LGGAQAFAKS---KKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 232 ~~~~~~~~~~---~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
.. +...+. ..+++++++.....+.|.+||-|-. ++|++
T Consensus 69 ~~--dAf~d~dWI~KLcs~~kkld~mkkkvlGICFGHQ-iiara 109 (245)
T KOG3179|consen 69 KH--DAFSDADWIKKLCSFVKKLDFMKKKVLGICFGHQ-IIARA 109 (245)
T ss_pred cc--cccccchHHHHHHHHHHHHHhhccceEEEeccHH-HHHHh
Confidence 43 323332 3788899998888899999999999 88874
No 164
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=95.28 E-value=0.072 Score=50.90 Aligned_cols=87 Identities=14% Similarity=0.218 Sum_probs=57.2
Q ss_pred EEecCCCchhhHHHHHHHHHhCCCe-EEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHH
Q 023800 165 VPIANGSEEMEAVIIIDILRRAKAN-VVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKK 243 (277)
Q Consensus 165 ill~~g~~~~e~~~~~~~l~~a~~~-v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~ 243 (277)
|++.|.++.... ...+.|++.|.+ +.++-++.. .++++....+|.||+.||...+.+ ...
T Consensus 2 il~idn~dsft~-nl~~~l~~~g~~~v~~~~~~~~---------------~~~~~~~~~~d~vIlsgGP~~p~~---~~~ 62 (534)
T PRK14607 2 IILIDNYDSFTY-NIYQYIGELGPEEIEVVRNDEI---------------TIEEIEALNPSHIVISPGPGRPEE---AGI 62 (534)
T ss_pred EEEEECchhHHH-HHHHHHHHcCCCeEEEECCCCC---------------CHHHHHhcCCCEEEECCCCCChhh---CCc
Confidence 455565555443 477888888875 666544321 234443346899999998755443 223
Q ss_pred HHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 244 LVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 244 ~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
..++++. ...++||.+||-|.. +|+.+
T Consensus 63 ~~~li~~-~~~~~PvLGIClG~Q-lLa~a 89 (534)
T PRK14607 63 SVEVIRH-FSGKVPILGVCLGHQ-AIGYA 89 (534)
T ss_pred cHHHHHH-hhcCCCEEEEcHHHH-HHHHH
Confidence 4566765 467899999999999 88874
No 165
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=95.02 E-value=0.1 Score=46.37 Aligned_cols=75 Identities=21% Similarity=0.241 Sum_probs=57.2
Q ss_pred HHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCc
Q 023800 178 IIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRP 257 (277)
Q Consensus 178 ~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~ 257 (277)
.++..|...|.++.+|-.+- +.+++-..++|.|++.-|.+++. .-+..++.+++.....+|
T Consensus 192 nIlr~L~~rg~~vtVVP~~t----------------~~eeIl~~~pDGiflSNGPGDP~---~~~~~i~~ik~l~~~~iP 252 (368)
T COG0505 192 NILRELVKRGCRVTVVPADT----------------SAEEILALNPDGIFLSNGPGDPA---PLDYAIETIKELLGTKIP 252 (368)
T ss_pred HHHHHHHHCCCeEEEEcCCC----------------CHHHHHhhCCCEEEEeCCCCChh---HHHHHHHHHHHHhccCCC
Confidence 45667777888888875432 34554335789999998865453 456888999999999999
Q ss_pred EEEEchhhHHhhhhC
Q 023800 258 YGAICASPALVLEPH 272 (277)
Q Consensus 258 i~aiC~G~~~lLa~a 272 (277)
|.+||-|-. +||-|
T Consensus 253 ifGICLGHQ-llalA 266 (368)
T COG0505 253 IFGICLGHQ-LLALA 266 (368)
T ss_pred eEEEcHHHH-HHHHh
Confidence 999999999 88864
No 166
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=94.78 E-value=0.049 Score=44.95 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=46.4
Q ss_pred hHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchhc---cccChHHHHHHHHHHhCCCEEE
Q 023800 5 ITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATN---LKESEVLESIVKKQASDGRLYA 78 (277)
Q Consensus 5 ~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~~---~~~~~~~~~~l~~~~~~g~~i~ 78 (277)
...+.|++.|+++.+++... . +++.+.. || ..... ....+.+.++++++.+++++|.
T Consensus 13 ~~~~~l~~~g~~v~v~~~~~--~--------------l~~~d~iiipG~-~~~~~~~~~~~~~~~~~~i~~~~~~~~pil 75 (198)
T cd01748 13 SVANALERLGAEVIITSDPE--E--------------ILSADKLILPGV-GAFGDAMANLRERGLIEALKEAIASGKPFL 75 (198)
T ss_pred HHHHHHHHCCCeEEEEcChH--H--------------hccCCEEEECCC-CcHHHHHHHHHHcChHHHHHHHHHCCCcEE
Confidence 45678889999999887432 1 2222211 33 11111 1123457899999999999999
Q ss_pred EEchhHHHHHHHc
Q 023800 79 AICVFLAVALGSW 91 (277)
Q Consensus 79 aiC~g~~~~La~a 91 (277)
+||.|.. +|+.+
T Consensus 76 GiC~G~q-~l~~~ 87 (198)
T cd01748 76 GICLGMQ-LLFES 87 (198)
T ss_pred EECHHHH-Hhccc
Confidence 9999999 99998
No 167
>PRK06186 hypothetical protein; Validated
Probab=94.68 E-value=0.05 Score=45.89 Aligned_cols=86 Identities=15% Similarity=0.135 Sum_probs=56.4
Q ss_pred eEEEEecCCCchh-hHHHHHHHHHhCC----CeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHH
Q 023800 162 QILVPIANGSEEM-EAVIIIDILRRAK----ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ 236 (277)
Q Consensus 162 kV~ill~~g~~~~-e~~~~~~~l~~a~----~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~ 236 (277)
+|+++= .-.... .+....+.|+.++ .++.+...+.. .+.. + + ...++|.|+||||++
T Consensus 3 ~IalVG-KY~~~~daY~Sv~eal~ha~~~~~~~~~i~wi~s~-~l~~--------~---~--~l~~~dgilvpgGfg--- 64 (229)
T PRK06186 3 RIALVG-DYNPDVTAHQAIPLALDLAAAVLGLPVDYEWLPTP-EITD--------P---E--DLAGFDGIWCVPGSP--- 64 (229)
T ss_pred EEEEEE-CCcCCcHHHHHHHHHHHHHHHhcCCeeEEEEEchh-hcCC--------h---h--hHhhCCeeEeCCCCC---
Confidence 556442 222332 3566788888774 45555544433 2111 1 1 135689999999974
Q ss_pred hhhcCHHHHHHHHHHHHcCCcEEEEchhhH
Q 023800 237 AFAKSKKLVNMLKKQKESNRPYGAICASPA 266 (277)
Q Consensus 237 ~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~ 266 (277)
.+--+.-+..++.+.++++|+.+||-|..
T Consensus 65 -~rg~~Gki~ai~~Are~~iP~LGIClGmQ 93 (229)
T PRK06186 65 -YRNDDGALTAIRFARENGIPFLGTCGGFQ 93 (229)
T ss_pred -cccHhHHHHHHHHHHHcCCCeEeechhhH
Confidence 23456778899999999999999999988
No 168
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=94.58 E-value=0.12 Score=42.23 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=28.0
Q ss_pred ChHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800 60 SEVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (277)
Q Consensus 60 ~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (277)
.+.+.++++++.++++++.+||.|.. +|+.+
T Consensus 67 ~~~~~~~i~~~~~~~~pilgiC~G~q-~l~~~ 97 (188)
T cd01741 67 LKKLKELIRQALAAGKPVLGICLGHQ-LLARA 97 (188)
T ss_pred HHHHHHHHHHHHHCCCCEEEECccHH-HHHHH
Confidence 36789999999999999999999999 88886
No 169
>PRK07053 glutamine amidotransferase; Provisional
Probab=94.39 E-value=0.22 Score=42.30 Aligned_cols=76 Identities=13% Similarity=0.010 Sum_probs=47.8
Q ss_pred HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchhc---cccChHHHHHHHHHHhCCCEEEE
Q 023800 6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATN---LKESEVLESIVKKQASDGRLYAA 79 (277)
Q Consensus 6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~~---~~~~~~~~~~l~~~~~~g~~i~a 79 (277)
..+.|++.|++++++....+. .. .+ .+.+++.. ||..+... .+--..+.++++++.+.++++.+
T Consensus 19 i~~~L~~~g~~~~v~~~~~~~-~~-------~~--~~~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~~~~PvlG 88 (234)
T PRK07053 19 FEQVLGARGYRVRYVDVGVDD-LE-------TL--DALEPDLLVVLGGPIGVYDDELYPFLAPEIALLRQRLAAGLPTLG 88 (234)
T ss_pred HHHHHHHCCCeEEEEecCCCc-cC-------CC--CccCCCEEEECCCCCCCCCCCcCCcHHHHHHHHHHHHHCCCCEEE
Confidence 456778888888888764311 10 00 11122211 65322211 12235788999999999999999
Q ss_pred EchhHHHHHHHcC
Q 023800 80 ICVFLAVALGSWG 92 (277)
Q Consensus 80 iC~g~~~~La~aG 92 (277)
||.|.. +|+++-
T Consensus 89 IC~G~Q-lla~al 100 (234)
T PRK07053 89 ICLGAQ-LIARAL 100 (234)
T ss_pred ECccHH-HHHHHc
Confidence 999999 898873
No 170
>PF13587 DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family; PDB: 1U9C_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A.
Probab=94.29 E-value=0.092 Score=31.06 Aligned_cols=18 Identities=17% Similarity=-0.082 Sum_probs=15.2
Q ss_pred CCchhhHHHHHHHHHhCC
Q 023800 170 GSEEMEAVIIIDILRRAK 187 (277)
Q Consensus 170 g~~~~e~~~~~~~l~~a~ 187 (277)
|++..|++.|+++|..+|
T Consensus 21 G~wl~E~~hpy~~f~~aG 38 (38)
T PF13587_consen 21 GFWLSELAHPYYVFTDAG 38 (38)
T ss_dssp -B-HHHHHHHHHHHHHTT
T ss_pred eeccHHHhhHHHHHHHCc
Confidence 899999999999999986
No 171
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=94.25 E-value=0.17 Score=41.96 Aligned_cols=50 Identities=34% Similarity=0.387 Sum_probs=37.9
Q ss_pred CCccEEEEcCCcchHHhhhc-C-HHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800 221 LSYDLIVLPGGLGGAQAFAK-S-KKLVNMLKKQKESNRPYGAICASPALVLEP 271 (277)
Q Consensus 221 ~~~D~livpGG~~~~~~~~~-~-~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~ 271 (277)
+.+|++++-||....+.+.. + ..-..-|++..+.++++.+||.|.. +|.+
T Consensus 51 ~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~Q-lLG~ 102 (250)
T COG3442 51 DSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQ-LLGQ 102 (250)
T ss_pred ccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchh-hccc
Confidence 47999999888643444322 2 3456678999999999999999999 8854
No 172
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=94.20 E-value=0.22 Score=40.29 Aligned_cols=71 Identities=17% Similarity=0.126 Sum_probs=45.6
Q ss_pred HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchhccccChHHHHHHHHHHhCCCEEEEEch
Q 023800 6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLKESEVLESIVKKQASDGRLYAAICV 82 (277)
Q Consensus 6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~ 82 (277)
.++.|++.|+++.++..+.. ... + ...+.+.. ||.... .......++++++.++++++.+||.
T Consensus 12 ~~~~l~~~G~~~~~~~~~~~--~~~-----~----~~~~~dgiil~GG~~~~---~~~~~~~~~~~~~~~~~~PvlGIC~ 77 (178)
T cd01744 12 ILRELLKRGCEVTVVPYNTD--AEE-----I----LKLDPDGIFLSNGPGDP---ALLDEAIKTVRKLLGKKIPIFGICL 77 (178)
T ss_pred HHHHHHHCCCeEEEEECCCC--HHH-----H----hhcCCCEEEECCCCCCh---hHhHHHHHHHHHHHhCCCCEEEECH
Confidence 35667778888888876531 110 0 00111111 663222 2346788999999999999999999
Q ss_pred hHHHHHHHc
Q 023800 83 FLAVALGSW 91 (277)
Q Consensus 83 g~~~~La~a 91 (277)
|.. +|+.+
T Consensus 78 G~Q-~l~~~ 85 (178)
T cd01744 78 GHQ-LLALA 85 (178)
T ss_pred HHH-HHHHH
Confidence 999 78774
No 173
>PRK00074 guaA GMP synthase; Reviewed
Probab=94.11 E-value=0.28 Score=46.69 Aligned_cols=88 Identities=17% Similarity=0.171 Sum_probs=55.0
Q ss_pred CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhc
Q 023800 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK 240 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~ 240 (277)
.+|+|+=+ |..- .......+++.|....++..+.. .+++...++|.||+|||..+... ..
T Consensus 4 ~~i~vlD~-Gsq~--~~li~r~lrelg~~~~v~p~~~~----------------~~~l~~~~~dgIIlsGGp~sv~~-~~ 63 (511)
T PRK00074 4 DKILILDF-GSQY--TQLIARRVRELGVYSEIVPYDIS----------------AEEIRAFNPKGIILSGGPASVYE-EG 63 (511)
T ss_pred CEEEEEEC-CCCc--HHHHHHHHHHCCCeEEEEECCCC----------------HHHHhccCCCEEEECCCCccccc-CC
Confidence 46777655 2221 23466888889988888754421 22332224699999999642221 11
Q ss_pred CHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 241 SKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 241 ~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
.+.+ .+...+.+++|.+||-|.. +|+.+
T Consensus 64 ~p~~---~~~i~~~~~PvLGIC~G~Q-lLa~~ 91 (511)
T PRK00074 64 APRA---DPEIFELGVPVLGICYGMQ-LMAHQ 91 (511)
T ss_pred Cccc---cHHHHhCCCCEEEECHHHH-HHHHH
Confidence 2222 2445678999999999999 88873
No 174
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=94.05 E-value=0.091 Score=44.92 Aligned_cols=73 Identities=22% Similarity=0.293 Sum_probs=48.0
Q ss_pred HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccCCCcc-chhccccChHHHHHHHHHHhCCCEEEEEchhH
Q 023800 6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACGMP-GATNLKESEVLESIVKKQASDGRLYAAICVFL 84 (277)
Q Consensus 6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~gG~~-~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~ 84 (277)
..+.|++.|.++.+++... .+....|+-+. ||.. .+..+.....+.+.|+++.++|+++.+||.|.
T Consensus 16 ~~~aL~~lG~ev~~v~~~~--~L~~~DgLILP-----------GGfs~~~~~L~~~~gl~~~I~~~v~~g~PvLGiC~Gm 82 (248)
T PLN02832 16 HIAALRRLGVEAVEVRKPE--QLEGVSGLIIP-----------GGESTTMAKLAERHNLFPALREFVKSGKPVWGTCAGL 82 (248)
T ss_pred HHHHHHHCCCcEEEeCCHH--HhccCCEEEeC-----------CCHHHHHHHHHhhcchHHHHHHHHHcCCCEEEEChhH
Confidence 3566777777777766532 22222222222 6542 23334444468888999989999999999999
Q ss_pred HHHHHHcC
Q 023800 85 AVALGSWG 92 (277)
Q Consensus 85 ~~~La~aG 92 (277)
. +|++..
T Consensus 83 q-lLa~~~ 89 (248)
T PLN02832 83 I-FLAERA 89 (248)
T ss_pred H-HHHHHh
Confidence 9 899875
No 175
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=93.71 E-value=0.78 Score=38.14 Aligned_cols=98 Identities=18% Similarity=0.178 Sum_probs=60.9
Q ss_pred CeEEEEecCCCchhh-HHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh-
Q 023800 161 PQILVPIANGSEEME-AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF- 238 (277)
Q Consensus 161 ~kV~ill~~g~~~~e-~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~- 238 (277)
.||+++-.......+ .....+.|++.|.++..+-.-. . ..+..+.+ .....|+|+++||.. ..-+
T Consensus 30 ~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~------~-----~~~~~~~~-~l~~ad~I~~~GG~~-~~~~~ 96 (210)
T cd03129 30 ARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLID------T-----ANDPDVVA-RLLEADGIFVGGGNQ-LRLLS 96 (210)
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccC------C-----CCCHHHHH-HHhhCCEEEEcCCcH-HHHHH
Confidence 578888665544333 3456678888887665553211 0 11122222 124689999999963 2211
Q ss_pred -hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 239 -AKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 239 -~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
.....+.+.|++.+++|.++++.|.|+. ++.+.
T Consensus 97 ~l~~t~~~~~i~~~~~~G~v~~G~SAGA~-~~~~~ 130 (210)
T cd03129 97 VLRETPLLDAILKRVARGVVIGGTSAGAA-VMGET 130 (210)
T ss_pred HHHhCChHHHHHHHHHcCCeEEEcCHHHH-Hhhhc
Confidence 1222466667777779999999999999 88874
No 176
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=93.68 E-value=0.12 Score=40.89 Aligned_cols=81 Identities=16% Similarity=0.150 Sum_probs=52.7
Q ss_pred HHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh--hhcCHHHHHHHHHHHHcC
Q 023800 178 IIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA--FAKSKKLVNMLKKQKESN 255 (277)
Q Consensus 178 ~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~--~~~~~~~~~~l~~~~~~~ 255 (277)
...++|++.|++++.+..... . .+...+.+ ...|+|++.||.. ..- ......+.+.|++.+++|
T Consensus 4 ~~~~~f~~~g~~v~~l~~~~~-~----------~~~~~~~i--~~ad~I~~~GG~~-~~l~~~l~~t~l~~~i~~~~~~G 69 (154)
T PF03575_consen 4 KFRKAFRKLGFEVDQLDLSDR-N----------DADILEAI--READAIFLGGGDT-FRLLRQLKETGLDEAIREAYRKG 69 (154)
T ss_dssp HHHHHHHHCT-EEEECCCTSC-G----------HHHHHHHH--HHSSEEEE--S-H-HHHHHHHHHTTHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCEEEEEeccCC-C----------hHHHHHHH--HhCCEEEECCCCH-HHHHHHHHhCCHHHHHHHHHHCC
Confidence 456889999998877765542 0 00112222 3589999999963 221 123456899999999999
Q ss_pred CcEEEEchhhHHhhhhCC
Q 023800 256 RPYGAICASPALVLEPHG 273 (277)
Q Consensus 256 ~~i~aiC~G~~~lLa~aG 273 (277)
+++++...|+. ++...+
T Consensus 70 ~vi~G~SAGA~-i~~~~~ 86 (154)
T PF03575_consen 70 GVIIGTSAGAM-ILGPSI 86 (154)
T ss_dssp SEEEEETHHHH-CTSSBS
T ss_pred CEEEEEChHHh-hccCce
Confidence 99999999999 776544
No 177
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=93.66 E-value=0.17 Score=47.36 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=30.5
Q ss_pred ccccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800 56 NLKESEVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (277)
Q Consensus 56 ~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (277)
.+..+..+.+.|+++.++|.+|.++|.|-. +|++.
T Consensus 303 ~l~~~~~~~~~i~~~~~~G~pv~g~CgG~~-~L~~~ 337 (449)
T TIGR00379 303 ELSQNQALRDSIKTFIHQGLPIYGECGGLM-YLSQS 337 (449)
T ss_pred HHHhhhHHHHHHHHHHHcCCCEEEEcHHHH-HHHhh
Confidence 345677889999999999999999999998 88875
No 178
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=93.54 E-value=0.15 Score=40.42 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=40.1
Q ss_pred cchhhhccCCccEEEEcCCcchHHh-hhcCHHHHHHHHHHHHcC-CcEEEEchhhHHhhhh
Q 023800 213 MLIDEAAKLSYDLIVLPGGLGGAQA-FAKSKKLVNMLKKQKESN-RPYGAICASPALVLEP 271 (277)
Q Consensus 213 ~~~~~~~~~~~D~livpGG~~~~~~-~~~~~~~~~~l~~~~~~~-~~i~aiC~G~~~lLa~ 271 (277)
.+-.|+ ...|++|||||...... +.+-..+.+-|-++..++ +++-+.|.|.. +|.+
T Consensus 49 KT~~D~--aq~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k~~WGTCAGmI-~LS~ 106 (226)
T KOG3210|consen 49 KTKNDL--AQCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSKVTWGTCAGMI-YLSQ 106 (226)
T ss_pred cCHHHH--hhCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCCccceeechhhh-hhhh
Confidence 333444 46899999999643222 334446888888888777 99999999998 7754
No 179
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=93.32 E-value=0.18 Score=42.28 Aligned_cols=50 Identities=18% Similarity=0.330 Sum_probs=28.3
Q ss_pred CCccEEEEcCCcchHHh-h--------------hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800 221 LSYDLIVLPGGLGGAQA-F--------------AKSKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (277)
Q Consensus 221 ~~~D~livpGG~~~~~~-~--------------~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~ 271 (277)
+..|.|++|||..+.+. + ..+.--..+++.+.+++++|.+||-|.. +|.-
T Consensus 57 ~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~~PilGICrG~Q-~lnv 121 (217)
T PF07722_consen 57 DRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRGKPILGICRGMQ-LLNV 121 (217)
T ss_dssp HCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT--EEEETHHHH-HHHH
T ss_pred hhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcCCCEEEEcHHHH-HHHH
Confidence 46899999999621210 0 1111234466677789999999999999 7743
No 180
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=93.23 E-value=0.16 Score=42.41 Aligned_cols=69 Identities=17% Similarity=0.248 Sum_probs=44.3
Q ss_pred hHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---C-Ccc--chhccccChHHHHHHHHHHhCCCEEE
Q 023800 5 ITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---C-GMP--GATNLKESEVLESIVKKQASDGRLYA 78 (277)
Q Consensus 5 ~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---g-G~~--~~~~~~~~~~~~~~l~~~~~~g~~i~ 78 (277)
...+.|++.|+++.+++... .+ ++++.. | |.. .+..+++ ..+...++++.++++++.
T Consensus 16 sl~~al~~~g~~v~vv~~~~--~l--------------~~~d~iIlPG~g~~~~~~~~l~~-~gl~~~i~~~~~~~~pvl 78 (210)
T CHL00188 16 SVSRAIQQAGQQPCIINSES--EL--------------AQVHALVLPGVGSFDLAMKKLEK-KGLITPIKKWIAEGNPFI 78 (210)
T ss_pred HHHHHHHHcCCcEEEEcCHH--Hh--------------hhCCEEEECCCCchHHHHHHHHH-CCHHHHHHHHHHcCCCEE
Confidence 56788888999988886431 11 111111 3 321 1222222 245677888888999999
Q ss_pred EEchhHHHHHHHc
Q 023800 79 AICVFLAVALGSW 91 (277)
Q Consensus 79 aiC~g~~~~La~a 91 (277)
+||-|-. +|++.
T Consensus 79 GIClG~Q-ll~~~ 90 (210)
T CHL00188 79 GICLGLH-LLFET 90 (210)
T ss_pred EECHHHH-HHhhc
Confidence 9999999 89886
No 181
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=93.16 E-value=0.18 Score=42.59 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=36.2
Q ss_pred CCccEEEEcCCcchHHhh--------------hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhh
Q 023800 221 LSYDLIVLPGGLGGAQAF--------------AKSKKLVNMLKKQKESNRPYGAICASPALVLE 270 (277)
Q Consensus 221 ~~~D~livpGG~~~~~~~--------------~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa 270 (277)
+..|.|+++||......+ .++.--+.+||++.++++||.+||-|.. +|.
T Consensus 59 ~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~Q-llN 121 (243)
T COG2071 59 DLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQ-LLN 121 (243)
T ss_pred hhccEEEecCCCcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchH-HHH
Confidence 468999999993211111 1233457789999999999999999999 775
No 182
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.09 E-value=0.19 Score=39.65 Aligned_cols=87 Identities=26% Similarity=0.360 Sum_probs=57.2
Q ss_pred chhhHHHHHHhCCCeEEEEeeCCCceeecCC---C--------C----------EEec--CccccccccC---CCccchh
Q 023800 2 EAVITIDVLRRSGADVVVASVEKQLRVDACH---G--------V----------KIVA--DALVSNCRDA---CGMPGAT 55 (277)
Q Consensus 2 E~~~~~~~l~~~~~~v~~~s~~~~~~v~~~~---g--------~----------~v~~--d~~~~~~~~~---gG~~~~~ 55 (277)
|.+..+-.+.+.|.+++.+.++. .+.---+ | + .+++ ....++.+.. ||++.+.
T Consensus 21 EsVltllai~r~GA~~~cFAP~~-~Q~hViNHlTGE~m~EtRNVLvEsARIaRG~i~~l~~a~~e~~DALivPGGFGAAK 99 (217)
T COG3155 21 ESVLTLLAISRSGAQAVCFAPDK-QQVHVINHLTGEAMPETRNVLVESARIARGEIRPLAQADAEELDALIVPGGFGAAK 99 (217)
T ss_pred HHHHHHHHHHhcCceeEEecCCc-hhhhhhhhccccccchhhhHHHHHHHHhhccccchhhcCHHhcceeeccCccchhh
Confidence 55667778889999999999986 3211111 1 0 1111 1111111111 7765444
Q ss_pred cc----------ccChHHHHHHHHHHhCCCEEEEEchhHHHHHHH
Q 023800 56 NL----------KESEVLESIVKKQASDGRLYAAICVFLAVALGS 90 (277)
Q Consensus 56 ~~----------~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~ 90 (277)
++ +-++++.++.+.|++.||+++=||-+|. +|.+
T Consensus 100 NLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~-m~pk 143 (217)
T COG3155 100 NLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPA-MLPK 143 (217)
T ss_pred hhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHH-HHHH
Confidence 43 4579999999999999999999999998 7776
No 183
>PRK06490 glutamine amidotransferase; Provisional
Probab=92.86 E-value=0.42 Score=40.71 Aligned_cols=75 Identities=12% Similarity=0.073 Sum_probs=46.2
Q ss_pred HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchh-ccccChHHHHHHHHHHhCCCEEEEEc
Q 023800 6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGAT-NLKESEVLESIVKKQASDGRLYAAIC 81 (277)
Q Consensus 6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~-~~~~~~~~~~~l~~~~~~g~~i~aiC 81 (277)
..+.|++.|+++.++.+..+.+. |+ .+++++.. ||..... ...-...+.+||++..+.++++.+||
T Consensus 24 l~~~l~~~g~~~~v~~~~~~~~~---------p~-~l~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~~~PvLGIC 93 (239)
T PRK06490 24 VGQLLQERGYPLDIRRPRLGDPL---------PD-TLEDHAGAVIFGGPMSANDPDDFIRREIDWISVPLKENKPFLGIC 93 (239)
T ss_pred HHHHHHHCCCceEEEeccCCCCC---------CC-cccccCEEEEECCCCCCCCCchHHHHHHHHHHHHHHCCCCEEEEC
Confidence 34566777888887765432111 11 12233222 6532211 11112457789999999999999999
Q ss_pred hhHHHHHHHc
Q 023800 82 VFLAVALGSW 91 (277)
Q Consensus 82 ~g~~~~La~a 91 (277)
-|.. +|+.+
T Consensus 94 ~G~Q-lla~a 102 (239)
T PRK06490 94 LGAQ-MLARH 102 (239)
T ss_pred HhHH-HHHHH
Confidence 9999 89997
No 184
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=92.81 E-value=1.2 Score=41.58 Aligned_cols=135 Identities=14% Similarity=0.094 Sum_probs=76.4
Q ss_pred CCCCCHHHHHHHHHHHhcChhHHHHHhhcccccccCCCchhhccc----Ccccccc-CCCCeEEEEecCCCchhhHHHHH
Q 023800 106 RGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEF----NPVQWTF-DNSPQILVPIANGSEEMEAVIII 180 (277)
Q Consensus 106 ~g~~~~~~~a~~li~~l~g~~~a~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~kV~ill~~g~~~~e~~~~~ 180 (277)
+|-.+..+=++..+|++.|.. .+..-+.-...+...+- ..+...- ++..+|+++-+|..+-..-..|+
T Consensus 199 RGd~~ll~~gik~Le~~tg~~-------vlGv~P~~~~~~~p~EDS~~~~~~~~~~~~~~i~Iav~~lp~isNFtD~dpL 271 (486)
T COG1492 199 RGDESLLDPGLKWLEELTGVP-------VLGVLPYLKDALRPAEDSLSLEQPKAGGNKRAIRIAVIRLPRISNFTDFDPL 271 (486)
T ss_pred CCCHHHHhhHHHHHHHhhCCe-------eEeeccccccccCccccccCchhhcccCCCCceEEEEecCCCccccccchhh
Confidence 566677888888888887763 22222222221111111 1111111 23458999988854433333333
Q ss_pred HHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhc--CHHHHHHHHHHHHcCCcE
Q 023800 181 DILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK--SKKLVNMLKKQKESNRPY 258 (277)
Q Consensus 181 ~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~--~~~~~~~l~~~~~~~~~i 258 (277)
... .+.++.++.+... + .+.|++|+||-.....++.. ..-+-.-+++..+++.+|
T Consensus 272 ~~~--~~v~v~~v~~~~~----------------l-----~~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~~~~~~v 328 (486)
T COG1492 272 RAE--PDVRVRFVKPGSD----------------L-----RDADLVILPGSKNTIADLKILREGGMDEKILEYARKGGDV 328 (486)
T ss_pred hcC--CCeEEEEeccCCC----------------C-----CCCCEEEeCCCcccHHHHHHHHHcCHHHHHHHHHhCCCCE
Confidence 332 4778888866543 2 23699999997543333321 223334556667779999
Q ss_pred EEEchhhHHhhhh
Q 023800 259 GAICASPALVLEP 271 (277)
Q Consensus 259 ~aiC~G~~~lLa~ 271 (277)
.+||.|-. +|.+
T Consensus 329 iGICGG~Q-mLG~ 340 (486)
T COG1492 329 IGICGGYQ-MLGR 340 (486)
T ss_pred EEEcchHH-hhhh
Confidence 99999999 6854
No 185
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=92.58 E-value=0.22 Score=45.63 Aligned_cols=72 Identities=26% Similarity=0.361 Sum_probs=53.7
Q ss_pred HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccc--hhccccChHHHHHHHHHHhCCCEEEEE
Q 023800 6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPG--ATNLKESEVLESIVKKQASDGRLYAAI 80 (277)
Q Consensus 6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~--~~~~~~~~~~~~~l~~~~~~g~~i~ai 80 (277)
-++.|++.|.++.++||-.++.+-. +++.. ||+|= +..+.+++.+.+.|++++++|++|-|=
T Consensus 263 nl~~Lr~~GAelv~FSPL~D~~lP~-------------~~D~vYlgGGYPElfA~~L~~n~~~~~~i~~~~~~G~piyaE 329 (451)
T COG1797 263 NLELLREAGAELVFFSPLADEELPP-------------DVDAVYLGGGYPELFAEELSANESMRRAIKAFAAAGKPIYAE 329 (451)
T ss_pred HHHHHHHCCCEEEEeCCcCCCCCCC-------------CCCEEEeCCCChHHHHHHHhhCHHHHHHHHHHHHcCCceEEe
Confidence 3577889999999999865322211 22221 67632 345788999999999999999999999
Q ss_pred chhHHHHHHHc
Q 023800 81 CVFLAVALGSW 91 (277)
Q Consensus 81 C~g~~~~La~a 91 (277)
|.|-+ .|.+.
T Consensus 330 CGGlM-YL~~~ 339 (451)
T COG1797 330 CGGLM-YLGES 339 (451)
T ss_pred cccce-eehhh
Confidence 99998 78764
No 186
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=92.28 E-value=0.53 Score=49.09 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=35.5
Q ss_pred cccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHcCCCCC
Q 023800 57 LKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKG 96 (277)
Q Consensus 57 ~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g 96 (277)
+..++.+.+-+++|.++++++.+||.|-. +|.+.|||-+
T Consensus 1057 ~~~n~~~~~~~~~f~~~d~~~LGICNGfQ-~L~~lGLlP~ 1095 (1239)
T TIGR01857 1057 ILRNPKVRVAIDSFLARDGLILGICNGFQ-ALVKSGLLPY 1095 (1239)
T ss_pred HhhChHHHHHHHHHHhCCCcEEEechHHH-HHHHcCCCcC
Confidence 45678899999999999999999999999 9999999985
No 187
>PRK00784 cobyric acid synthase; Provisional
Probab=92.23 E-value=0.28 Score=46.38 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=29.1
Q ss_pred cChHHHHHHHHHHhCCCEEEEEchhHHHHHHHcC
Q 023800 59 ESEVLESIVKKQASDGRLYAAICVFLAVALGSWG 92 (277)
Q Consensus 59 ~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aG 92 (277)
++..+.+.|+++.++|+++.++|.|-. +|++.-
T Consensus 310 ~~~~l~~~i~~~~~~g~pilg~C~G~~-~L~~~~ 342 (488)
T PRK00784 310 RESGWDEAIRAHARRGGPVLGICGGYQ-MLGRRI 342 (488)
T ss_pred HHcCHHHHHHHHHHcCCeEEEECHHHH-HHhhhc
Confidence 455688899999999999999999999 898864
No 188
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=92.12 E-value=0.28 Score=43.24 Aligned_cols=107 Identities=12% Similarity=0.130 Sum_probs=59.4
Q ss_pred CCCeEEEEe-cCCCchhhHHHHHHHHHhC--CCeEEEEeeCCCceEE-cccCcEEEeCcchhhhccCCccEEEEcCCcch
Q 023800 159 NSPQILVPI-ANGSEEMEAVIIIDILRRA--KANVVVASVADKLEIL-ASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG 234 (277)
Q Consensus 159 ~~~kV~ill-~~g~~~~e~~~~~~~l~~a--~~~v~~vs~~~~~~v~-~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~ 234 (277)
++.||+||= .|.-..+|. -++..|... .++++++....- .-+ ++....-.--.+++++....||++||.|....
T Consensus 34 rpl~i~ilNlMp~k~~TE~-q~~rll~~~~~qv~v~~~~~~~h-~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITGAp~e 111 (302)
T PRK05368 34 RPLKILILNLMPKKIETET-QFLRLLGNTPLQVDIHLLRIDSH-ESKNTPAEHLENFYCTFEDIKDEKFDGLIITGAPVE 111 (302)
T ss_pred CCccEEEEeCCCCCchHHH-HHHHHhcCCCceEEEEEEecCCc-CCCCCCHHHHHHhccCHHHhccCCCCEEEEcCCCCC
Confidence 357888885 465556664 334444333 245666655432 111 11111011124567776678999999997421
Q ss_pred HHhhhc------CHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800 235 AQAFAK------SKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (277)
Q Consensus 235 ~~~~~~------~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~ 271 (277)
.....+ ..++.+|++ ++.+.+..||-|.. +++.
T Consensus 112 ~~~fedv~YW~El~~i~~w~~---~~~~s~LgICwGaQ-a~a~ 150 (302)
T PRK05368 112 QLPFEDVDYWDELKEILDWAK---THVTSTLFICWAAQ-AALY 150 (302)
T ss_pred CccCCCCchHHHHHHHHHHHH---HcCCCEEEEcHHHH-HHHH
Confidence 101111 234555555 56899999999999 6664
No 189
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=91.88 E-value=0.58 Score=38.30 Aligned_cols=70 Identities=19% Similarity=0.259 Sum_probs=45.9
Q ss_pred hHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchhccccChHHHHHHHHHHhCCCEEEEEc
Q 023800 5 ITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLKESEVLESIVKKQASDGRLYAAIC 81 (277)
Q Consensus 5 ~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC 81 (277)
...+.|++.|+++.++..+... ++ .+++.+.. ||. +.. ...+.+.+++++ .+.++++.+||
T Consensus 16 ~i~~~l~~~g~~~~v~~~~~~~-----------~~-~l~~~d~iIi~gGp-~~~--~~~~~~~~~i~~-~~~~~PiLGIC 79 (190)
T PRK06895 16 NLVDLIRKLGVPMQVVNVEDLD-----------LD-EVENFSHILISPGP-DVP--RAYPQLFAMLER-YHQHKSILGVC 79 (190)
T ss_pred HHHHHHHHcCCcEEEEECCccC-----------hh-HhccCCEEEECCCC-CCh--HHhhHHHHHHHH-hcCCCCEEEEc
Confidence 3567888889999998865310 00 11222211 663 321 123567888886 67899999999
Q ss_pred hhHHHHHHHc
Q 023800 82 VFLAVALGSW 91 (277)
Q Consensus 82 ~g~~~~La~a 91 (277)
-|.. +|+.+
T Consensus 80 lG~Q-lla~~ 88 (190)
T PRK06895 80 LGHQ-TLCEF 88 (190)
T ss_pred HHHH-HHHHH
Confidence 9999 89988
No 190
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=91.80 E-value=0.54 Score=49.35 Aligned_cols=90 Identities=13% Similarity=0.188 Sum_probs=55.5
Q ss_pred HHHHHHhCCCeEEEEeeCC---C-ceeecCCCCEEecCccccccccCCCccc-hhccccChHHHHHHHHHH-hCCCEEEE
Q 023800 6 TIDVLRRSGADVVVASVEK---Q-LRVDACHGVKIVADALVSNCRDACGMPG-ATNLKESEVLESIVKKQA-SDGRLYAA 79 (277)
Q Consensus 6 ~~~~l~~~~~~v~~~s~~~---~-~~v~~~~g~~v~~d~~~~~~~~~gG~~~-~~~~~~~~~~~~~l~~~~-~~g~~i~a 79 (277)
....|.++||++..+..+. + .......|+.+.=-.+..|... .| .+ ...+..++.+.+-+++|. +.++++.+
T Consensus 1054 ~~~Af~~aGf~~~~V~~~dl~~~~~~L~~~~glv~pGGFSyGD~l~-sg-~~wa~~i~~n~~~~~~~~~f~~~~d~~~LG 1131 (1307)
T PLN03206 1054 MAAAFYAAGFEPWDVTMSDLLNGRISLDDFRGIVFVGGFSYADVLD-SA-KGWAGSIRFNEPLLQQFQEFYNRPDTFSLG 1131 (1307)
T ss_pred HHHHHHHcCCceEEEEeeecccccccccceeEEEEcCcCCCccccc-hH-HHHHHHHHhChHHHHHHHHHHhCCCceEEE
Confidence 3567778898887777653 0 0011112222221111111111 11 11 224567889999999999 55999999
Q ss_pred EchhHHHHHHHcCCCCCCC
Q 023800 80 ICVFLAVALGSWGLLKGLK 98 (277)
Q Consensus 80 iC~g~~~~La~aGll~g~~ 98 (277)
||.|-. +|.+.|||.|-.
T Consensus 1132 ICNGfQ-iL~~lgllPg~~ 1149 (1307)
T PLN03206 1132 VCNGCQ-LMALLGWVPGPQ 1149 (1307)
T ss_pred EcHHHH-HHHHcCCCCCCc
Confidence 999999 999999998754
No 191
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=91.57 E-value=0.31 Score=40.17 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=24.4
Q ss_pred HHHHHHHHHhCCCEEEEEchhHHHHHHHcC
Q 023800 63 LESIVKKQASDGRLYAAICVFLAVALGSWG 92 (277)
Q Consensus 63 ~~~~l~~~~~~g~~i~aiC~g~~~~La~aG 92 (277)
+..+++++.+.+++|.+||.|.. +|+++.
T Consensus 60 ~~~l~~~~~~~~~pvlGiC~G~Q-ll~~~~ 88 (196)
T TIGR01855 60 LDLFVELVVRLGKPVLGICLGMQ-LLFERS 88 (196)
T ss_pred cHHHHHHHHhCCCCEEEECHHHH-Hhhhcc
Confidence 34455878889999999999999 999984
No 192
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=91.56 E-value=0.39 Score=47.92 Aligned_cols=70 Identities=29% Similarity=0.338 Sum_probs=50.4
Q ss_pred HHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEE
Q 023800 180 IDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYG 259 (277)
Q Consensus 180 ~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~ 259 (277)
+..|...|.++.++-.+ ..+++ .+||.|++..|.+++. .-+.+.+-+++....++||.
T Consensus 187 IRcL~~RGa~vtVvPw~----------------~~i~~---~~yDGlflSNGPGdPe---~~~~~v~~vr~lL~~~~Pvf 244 (1435)
T KOG0370|consen 187 IRCLVKRGAEVTVVPWD----------------YPIAK---EEYDGLFLSNGPGDPE---LCPLLVQNVRELLESNVPVF 244 (1435)
T ss_pred HHHHHHhCceEEEecCC----------------ccccc---cccceEEEeCCCCCch---hhHHHHHHHHHHHhCCCCeE
Confidence 44555567777666433 33444 3699999999865444 34567777788777789999
Q ss_pred EEchhhHHhhhhC
Q 023800 260 AICASPALVLEPH 272 (277)
Q Consensus 260 aiC~G~~~lLa~a 272 (277)
+||.|-. +||.+
T Consensus 245 GIClGHQ-llA~A 256 (1435)
T KOG0370|consen 245 GICLGHQ-LLALA 256 (1435)
T ss_pred EEehhhH-HHHHh
Confidence 9999999 89874
No 193
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=91.47 E-value=0.96 Score=45.05 Aligned_cols=89 Identities=17% Similarity=0.209 Sum_probs=50.4
Q ss_pred EEEecCCCchhhHHHHHHHHHhC---CCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhc
Q 023800 164 LVPIANGSEEMEAVIIIDILRRA---KANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK 240 (277)
Q Consensus 164 ~ill~~g~~~~e~~~~~~~l~~a---~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~ 240 (277)
-|++.|.++.... -.++.|++. +.++.++..+.. . ...+.+ ...||.|||.||.+.+.
T Consensus 7 ~iL~ID~~DSft~-nl~~~l~~~~g~~~~v~vv~~d~~-----------~-~~~~~~--l~~~D~VVIspGPG~p~---- 67 (742)
T TIGR01823 7 HVLFIDSYDSFTY-NVVRLLEQQTDISVHVTTVHSDTF-----------Q-DQLLEL--LPLFDAIVVGPGPGNPN---- 67 (742)
T ss_pred eEEEEeCCcchHH-HHHHHHHHhcCCCcEEEEEeCCCC-----------c-hhhhhh--hcCCCEEEECCCCCCcc----
Confidence 3444565544432 344556654 356666654421 0 001112 24689999988764332
Q ss_pred CHHHHHHHHHHHHc----CCcEEEEchhhHHhhhhC
Q 023800 241 SKKLVNMLKKQKES----NRPYGAICASPALVLEPH 272 (277)
Q Consensus 241 ~~~~~~~l~~~~~~----~~~i~aiC~G~~~lLa~a 272 (277)
++.-..++++..+. ++||.+||.|.. +|+.+
T Consensus 68 ~~~~~~i~~~i~~~~~~~~iPvLGIClG~Q-lLa~a 102 (742)
T TIGR01823 68 NAQDMGIISELWELANLDEVPVLGICLGFQ-SLCLA 102 (742)
T ss_pred chhhhHHHHHHHHhcccCCCcEEEEchhhH-HHHhh
Confidence 22334455555543 499999999999 88875
No 194
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=91.37 E-value=1.9 Score=36.17 Aligned_cols=100 Identities=23% Similarity=0.205 Sum_probs=62.5
Q ss_pred CeEEEEecCCCchhhH-HHHHHHHHhCCC-eEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcch-HHh
Q 023800 161 PQILVPIANGSEEMEA-VIIIDILRRAKA-NVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG-AQA 237 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~-~~~~~~l~~a~~-~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~-~~~ 237 (277)
.||+++-.......+. -...+.|++.|. +++++..... . -..+..+.+. ....|+|++.||... ...
T Consensus 30 ~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~-~--------~a~~~~~~~~-l~~ad~I~~~GG~~~~~~~ 99 (217)
T cd03145 30 ARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSR-E--------AANDPEVVAR-LRDADGIFFTGGDQLRITS 99 (217)
T ss_pred CcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCCh-H--------HcCCHHHHHH-HHhCCEEEEeCCcHHHHHH
Confidence 5788887665444333 335667777786 4565544321 1 0011111111 246899999999631 111
Q ss_pred hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800 238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (277)
Q Consensus 238 ~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~ 271 (277)
......+.+.|++.+++|.++++...|+. ++.+
T Consensus 100 ~l~~t~l~~~l~~~~~~G~v~~G~SAGA~-i~~~ 132 (217)
T cd03145 100 ALGGTPLLDALRKVYRGGVVIGGTSAGAA-VMSD 132 (217)
T ss_pred HHcCChHHHHHHHHHHcCCEEEEccHHHH-hhhh
Confidence 22345788899999999999999999999 7765
No 195
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=90.96 E-value=1.1 Score=45.32 Aligned_cols=91 Identities=16% Similarity=0.168 Sum_probs=56.7
Q ss_pred EEEEecCCCchhhHHHHHHHHHhC-CCeEEEEeeCCCceEEcccCcEEEeCcchhhhc-----cCCccEEEEcCCcchHH
Q 023800 163 ILVPIANGSEEMEAVIIIDILRRA-KANVVVASVADKLEILASCQVKLVADMLIDEAA-----KLSYDLIVLPGGLGGAQ 236 (277)
Q Consensus 163 V~ill~~g~~~~e~~~~~~~l~~a-~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~-----~~~~D~livpGG~~~~~ 236 (277)
+-||+.|+++-.... .++.|+.. |.++.++-.+. .+++++. ...||.|||-+|.+.+.
T Consensus 82 ~~iLlIDnyDSfTyN-L~~~L~~~~g~~~~Vv~nd~---------------~~~~~~~~~~~~~~~~d~IVlSPGPG~P~ 145 (918)
T PLN02889 82 VRTLLIDNYDSYTYN-IYQELSIVNGVPPVVVRNDE---------------WTWEEVYHYLYEEKAFDNIVISPGPGSPT 145 (918)
T ss_pred ceEEEEeCCCchHHH-HHHHHHHhcCCCEEEEeCCC---------------CCHHHHHhhhhcccCCCEEEECCCCCCcc
Confidence 346667887776654 56667766 77877775542 1233321 13689999988865443
Q ss_pred hhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 237 AFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 237 ~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
...+.....+.|++. .+.+|.+||-|-. +|+.+
T Consensus 146 ~~~d~Gi~~~~i~~~--~~iPILGICLGhQ-~i~~~ 178 (918)
T PLN02889 146 CPADIGICLRLLLEC--RDIPILGVCLGHQ-ALGYV 178 (918)
T ss_pred chHHHHHHHHHHHHh--CCCcEEEEcHHHH-HHHHh
Confidence 211112234555543 4799999999999 78764
No 196
>PHA03366 FGAM-synthase; Provisional
Probab=90.91 E-value=0.68 Score=48.84 Aligned_cols=88 Identities=10% Similarity=0.038 Sum_probs=54.9
Q ss_pred HHHHHHhCCCeEEEEeeCC---CceeecCCCCEEecCccccccccCCCccchhccccChHHHHHHHHHH-hCCCEEEEEc
Q 023800 6 TIDVLRRSGADVVVASVEK---QLRVDACHGVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQA-SDGRLYAAIC 81 (277)
Q Consensus 6 ~~~~l~~~~~~v~~~s~~~---~~~v~~~~g~~v~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~l~~~~-~~g~~i~aiC 81 (277)
....|.++||++..+..+. +..+..-.|+.+.=-.+..|... +|..-+..+..|+.+.+.+++|+ +.++.+.+||
T Consensus 1045 ~~~Af~~aGf~~~~v~~~dL~~~~~l~~f~glv~~GGFS~gD~l~-~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiC 1123 (1304)
T PHA03366 1045 LLAAFTNAGFDPYPVSIEELKDGTFLDEFSGLVIGGSSGAEDSYT-GARAAVAALLSNPAVRDALLRFLNRPDTFSLGCG 1123 (1304)
T ss_pred HHHHHHHcCCceEEEEeecCCCCCccccceEEEEcCCCCCccccc-HHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeC
Confidence 4567788999988888764 11111111222211111111111 22111234567899999999999 5699999999
Q ss_pred h-hHHHHHHHcCCCC
Q 023800 82 V-FLAVALGSWGLLK 95 (277)
Q Consensus 82 ~-g~~~~La~aGll~ 95 (277)
. |-. +|++.|++.
T Consensus 1124 N~G~Q-~L~~lgll~ 1137 (1304)
T PHA03366 1124 ELGCQ-ILFALKAVG 1137 (1304)
T ss_pred cHHHH-HHHHcCCcc
Confidence 9 999 999999994
No 197
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=90.71 E-value=2.3 Score=36.47 Aligned_cols=100 Identities=20% Similarity=0.201 Sum_probs=62.7
Q ss_pred CeEEEEecCCCchhh-HHHHHHHHHhCCC-eEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcch-HHh
Q 023800 161 PQILVPIANGSEEME-AVIIIDILRRAKA-NVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG-AQA 237 (277)
Q Consensus 161 ~kV~ill~~g~~~~e-~~~~~~~l~~a~~-~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~-~~~ 237 (277)
.||+|+-.-.....+ .....+.|+..|. +++++..... . . ..+..+.+. ....|+|++.||... ...
T Consensus 29 ~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r-~--~------a~~~~~~~~-l~~ad~I~~~GGnq~~l~~ 98 (250)
T TIGR02069 29 AIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVRER-E--D------ASDENAIAL-LSNATGIFFTGGDQLRITS 98 (250)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCCh-H--H------ccCHHHHHH-HhhCCEEEEeCCCHHHHHH
Confidence 578887654434333 3346678888887 4666654321 0 0 011111111 246899999999631 111
Q ss_pred hhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800 238 FAKSKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (277)
Q Consensus 238 ~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~ 271 (277)
......+.+.|++.+++|.++++...|+. ++.+
T Consensus 99 ~l~~t~l~~~l~~~~~~G~vi~G~SAGA~-i~~~ 131 (250)
T TIGR02069 99 LLGDTPLLDRLRKRVHEGIILGGTSAGAA-VMSD 131 (250)
T ss_pred HHcCCcHHHHHHHHHHcCCeEEEccHHHH-hccc
Confidence 23455788899999999999999999998 7753
No 198
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=89.80 E-value=0.65 Score=38.20 Aligned_cols=75 Identities=21% Similarity=0.283 Sum_probs=47.8
Q ss_pred HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccCCCc-cchhccccChHHHHHHHHHHhCCCEEEEEchhH
Q 023800 6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACGM-PGATNLKESEVLESIVKKQASDGRLYAAICVFL 84 (277)
Q Consensus 6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~gG~-~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~ 84 (277)
....|++.|+++.+.+... .+....++-+.=- |-+ ..+..+++. .+.+.|++....++++.+||-|.
T Consensus 17 v~~Aler~G~~~~vs~d~~--~i~~AD~liLPGV---------Gaf~~am~~L~~~-gl~~~i~~~~~~~kP~LGIClGM 84 (204)
T COG0118 17 VKKALERLGAEVVVSRDPE--EILKADKLILPGV---------GAFGAAMANLRER-GLIEAIKEAVESGKPFLGICLGM 84 (204)
T ss_pred HHHHHHHcCCeeEEecCHH--HHhhCCEEEecCC---------CCHHHHHHHHHhc-chHHHHHHHHhcCCCEEEEeHhH
Confidence 4556777777776655332 2333333333211 211 124445544 88999999999999999999999
Q ss_pred HHHHHHcCC
Q 023800 85 AVALGSWGL 93 (277)
Q Consensus 85 ~~~La~aGl 93 (277)
. +|.+.+.
T Consensus 85 Q-lLfe~Se 92 (204)
T COG0118 85 Q-LLFERSE 92 (204)
T ss_pred H-hhhhccc
Confidence 9 8887664
No 199
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=89.58 E-value=1.1 Score=47.11 Aligned_cols=88 Identities=13% Similarity=0.079 Sum_probs=55.2
Q ss_pred HHHHHHhCCCeEEEEeeCC---CceeecCCCCEEecCccccccccCCCccc-hhccccChHHHHHHHHHH-hCCCEEEEE
Q 023800 6 TIDVLRRSGADVVVASVEK---QLRVDACHGVKIVADALVSNCRDACGMPG-ATNLKESEVLESIVKKQA-SDGRLYAAI 80 (277)
Q Consensus 6 ~~~~l~~~~~~v~~~s~~~---~~~v~~~~g~~v~~d~~~~~~~~~gG~~~-~~~~~~~~~~~~~l~~~~-~~g~~i~ai 80 (277)
....|.++||++..+..+. +.....-.|+.+ -.-+.--+..|+-.+ ...+..++.+.+.+++|+ +.++.+.+|
T Consensus 946 ~~~Af~~aGf~~~~v~~~dl~~~~~l~~f~glv~--~Ggfsy~D~lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGi 1023 (1202)
T TIGR01739 946 LLAALTNAGFDPRIVSITELKKTDFLDTFSGLII--GGASGTLDSEVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGF 1023 (1202)
T ss_pred HHHHHHHcCCceEEEEeccCCCCCchhheEEEEE--cCcCCCCccchHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEe
Confidence 4567888999998888764 011111112211 111111111121122 334567899999999999 569999999
Q ss_pred ch-hHHHHHHHcCCCCC
Q 023800 81 CV-FLAVALGSWGLLKG 96 (277)
Q Consensus 81 C~-g~~~~La~aGll~g 96 (277)
|. |-. +|++.|++..
T Consensus 1024 CN~G~Q-~L~~lg~l~~ 1039 (1202)
T TIGR01739 1024 GELGCQ-LLLALNIVGY 1039 (1202)
T ss_pred CcHHHH-HHHHcCCCcC
Confidence 99 999 9999999964
No 200
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=89.49 E-value=0.91 Score=43.40 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800 61 EVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (277)
Q Consensus 61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (277)
..+.+.|+++.+.|+++.+||.|.. +|+++
T Consensus 66 ~gl~~~i~~~i~~g~PvLGIC~G~Q-lLa~~ 95 (538)
T PLN02617 66 RGMAEALREYIQNDRPFLGICLGLQ-LLFES 95 (538)
T ss_pred cCHHHHHHHHHHcCCCEEEECHHHH-HHhhh
Confidence 3477788999999999999999999 99975
No 201
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=89.31 E-value=0.67 Score=38.60 Aligned_cols=30 Identities=30% Similarity=0.467 Sum_probs=23.7
Q ss_pred HHHHHHHHHhCCCEEEEEchhHHHHHHHcCC
Q 023800 63 LESIVKKQASDGRLYAAICVFLAVALGSWGL 93 (277)
Q Consensus 63 ~~~~l~~~~~~g~~i~aiC~g~~~~La~aGl 93 (277)
...+++...++++++.+||.|.. +|++++.
T Consensus 66 ~~~~~~~~~~~~~PvlGiC~G~q-~l~~~~~ 95 (209)
T PRK13146 66 GEAVIEAVLAAGRPFLGICVGMQ-LLFERGL 95 (209)
T ss_pred HHHHHHHHHhCCCcEEEECHHHH-HHhhccc
Confidence 34455555678999999999999 9999854
No 202
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=89.20 E-value=1 Score=36.83 Aligned_cols=69 Identities=16% Similarity=0.196 Sum_probs=42.1
Q ss_pred HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC-----CCccchhccccChHHHHHHHHHHhCCCEEEEE
Q 023800 6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA-----CGMPGATNLKESEVLESIVKKQASDGRLYAAI 80 (277)
Q Consensus 6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~-----gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~ai 80 (277)
.++.|++.|+++.++..+. ..+.. +.+...+ ||...+. +.....++++++ +++++|.+|
T Consensus 15 ~~~~l~~~g~~v~v~~~~~-~~~~~-----------~~~~~~d~iilsgGpg~p~---~~~~~~~~i~~~-~~~~PvLGI 78 (188)
T TIGR00566 15 LVQYFCELGAEVVVKRNDS-LTLQE-----------IEALLPLLIVISPGPCTPN---EAGISLEAIRHF-AGKLPILGV 78 (188)
T ss_pred HHHHHHHcCCceEEEECCC-CCHHH-----------HHhcCCCEEEEcCCCCChh---hcchhHHHHHHh-ccCCCEEEE
Confidence 3556777788888777553 11111 1111111 6632222 223347888887 678999999
Q ss_pred chhHHHHHHHc
Q 023800 81 CVFLAVALGSW 91 (277)
Q Consensus 81 C~g~~~~La~a 91 (277)
|.|-. +|+.+
T Consensus 79 C~G~Q-ll~~~ 88 (188)
T TIGR00566 79 CLGHQ-AMGQA 88 (188)
T ss_pred CHHHH-HHHHH
Confidence 99999 88876
No 203
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=89.13 E-value=1.1 Score=36.47 Aligned_cols=70 Identities=14% Similarity=0.082 Sum_probs=43.7
Q ss_pred HHHHHHhCCCeEEEEeeCCC-ceeecCC--CCEEecCccccccccCCCccchhccccChHHHHHHHHHHhCCCEEEEEch
Q 023800 6 TIDVLRRSGADVVVASVEKQ-LRVDACH--GVKIVADALVSNCRDACGMPGATNLKESEVLESIVKKQASDGRLYAAICV 82 (277)
Q Consensus 6 ~~~~l~~~~~~v~~~s~~~~-~~v~~~~--g~~v~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~ 82 (277)
..+.|++.|+++.++..+.. ..+.... |+-+. ||. .. ..+.....|+++..+.++++.+||.
T Consensus 14 l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~glii~-----------Gg~-~~---~~~~~~~~~i~~~~~~~~PilGIC~ 78 (188)
T TIGR00888 14 IARRLRELGVYSELVPNTTPLEEIREKNPKGIILS-----------GGP-SS---VYAENAPRADEKIFELGVPVLGICY 78 (188)
T ss_pred HHHHHHHcCCEEEEEeCCCCHHHHhhcCCCEEEEC-----------CCC-CC---cCcCCchHHHHHHHhCCCCEEEECH
Confidence 45678888998888765421 0111100 11111 552 22 1223456788888999999999999
Q ss_pred hHHHHHHHc
Q 023800 83 FLAVALGSW 91 (277)
Q Consensus 83 g~~~~La~a 91 (277)
|.. +|+.+
T Consensus 79 G~Q-ll~~~ 86 (188)
T TIGR00888 79 GMQ-LMAKQ 86 (188)
T ss_pred HHH-HHHHh
Confidence 999 89876
No 204
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=88.61 E-value=3.5 Score=32.70 Aligned_cols=85 Identities=20% Similarity=0.252 Sum_probs=56.0
Q ss_pred eEEEEec--CCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhh
Q 023800 162 QILVPIA--NGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA 239 (277)
Q Consensus 162 kV~ill~--~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~ 239 (277)
|++|+-. +|-.--=.......|++.|++|++.-...- ...++++||.|+|... .....
T Consensus 2 k~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~-----------------~~~~l~~ydavVIgAs---I~~~h 61 (175)
T COG4635 2 KTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAV-----------------EEPALEDYDAVVIGAS---IRYGH 61 (175)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhhh-----------------hccChhhCceEEEecc---hhhhh
Confidence 4444433 333333334566677778888887755432 2234568999999653 34455
Q ss_pred cCHHHHHHHHHHHH--cCCcEEEEchhhH
Q 023800 240 KSKKLVNMLKKQKE--SNRPYGAICASPA 266 (277)
Q Consensus 240 ~~~~~~~~l~~~~~--~~~~i~aiC~G~~ 266 (277)
.++.+.+|+++..+ ..+|.+.+|.+..
T Consensus 62 ~~~~~~~Fv~k~~e~L~~kP~A~f~vnl~ 90 (175)
T COG4635 62 FHEAVQSFVKKHAEALSTKPSAFFSVNLT 90 (175)
T ss_pred hHHHHHHHHHHHHHHHhcCCceEEEeehh
Confidence 68899999998776 5899999998765
No 205
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=88.32 E-value=1 Score=41.83 Aligned_cols=68 Identities=32% Similarity=0.372 Sum_probs=43.2
Q ss_pred HHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccc--hhccccChHHHHHHHHHHhCCCEEEEEc
Q 023800 7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPG--ATNLKESEVLESIVKKQASDGRLYAAIC 81 (277)
Q Consensus 7 ~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~--~~~~~~~~~~~~~l~~~~~~g~~i~aiC 81 (277)
++.|++. .++..+|+-.+.. +.+++.. ||.+- ...++.+... +-|+++.++|++|.|+|
T Consensus 252 l~~L~~~-aelv~fSPl~~~~--------------lp~~D~l~lpGG~~e~~~~~L~~n~~~-~~i~~~~~~G~pi~aeC 315 (433)
T PRK13896 252 IERLRER-ADVVTFSPVAGDP--------------LPDCDGVYLPGGYPELHADALADSPAL-DELADRAADGLPVLGEC 315 (433)
T ss_pred HHHHHhc-CcEEEEcCCCCCC--------------CCCCCEEEeCCCchhhHHHHHHhCCcH-HHHHHHHHCCCcEEEEe
Confidence 4567777 7888888743221 2222211 55421 1224455455 78899999999999999
Q ss_pred hhHHHHHHHc
Q 023800 82 VFLAVALGSW 91 (277)
Q Consensus 82 ~g~~~~La~a 91 (277)
.|-+ +|.+.
T Consensus 316 GG~q-~L~~~ 324 (433)
T PRK13896 316 GGLM-ALAES 324 (433)
T ss_pred hHHH-Hhhcc
Confidence 9998 88773
No 206
>PRK05665 amidotransferase; Provisional
Probab=88.24 E-value=0.62 Score=39.73 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800 61 EVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (277)
Q Consensus 61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (277)
..+.+||++..++++++.+||-|-. +||.+
T Consensus 78 ~~l~~~i~~~~~~~~PilGIC~GhQ-lla~A 107 (240)
T PRK05665 78 QTLKTYLLKLYERGDKLLGVCFGHQ-LLALL 107 (240)
T ss_pred HHHHHHHHHHHhcCCCEEEEeHHHH-HHHHH
Confidence 5678999999999999999999999 89886
No 207
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=88.00 E-value=1.4 Score=46.67 Aligned_cols=39 Identities=5% Similarity=0.048 Sum_probs=33.5
Q ss_pred ccccChHHHHHHHHHH-hCCCEEEEEchhHHHHHHHcC-CCC
Q 023800 56 NLKESEVLESIVKKQA-SDGRLYAAICVFLAVALGSWG-LLK 95 (277)
Q Consensus 56 ~~~~~~~~~~~l~~~~-~~g~~i~aiC~g~~~~La~aG-ll~ 95 (277)
.+..|+.+.+-+++|+ ++++++.+||.|-. +|.+.| |+.
T Consensus 1105 ~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ-~L~~lg~l~p 1145 (1290)
T PRK05297 1105 SILFNPRLRDQFEAFFARPDTFALGVCNGCQ-MMSNLKEIIP 1145 (1290)
T ss_pred HhhccHHHHHHHHHHHhCCCceEEEEcHHHH-HHHHhCCccC
Confidence 3456889999999987 78999999999999 999998 543
No 208
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=87.95 E-value=0.49 Score=37.51 Aligned_cols=35 Identities=23% Similarity=0.191 Sum_probs=30.6
Q ss_pred cccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHcC
Q 023800 57 LKESEVLESIVKKQASDGRLYAAICVFLAVALGSWG 92 (277)
Q Consensus 57 ~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aG 92 (277)
+.++..+.+.|+++.++|++|.|+|.|-. +|.+.=
T Consensus 25 l~~~~~~~~~I~~~~~~G~pi~aeCGG~~-~Lg~~i 59 (158)
T PF07685_consen 25 LSRNRGLKEAIREAAEAGGPIYAECGGYQ-YLGESI 59 (158)
T ss_pred HHHHhCHHHHHHHHHHcCCcEEEEchHHH-HHHHHH
Confidence 45677899999999999999999999998 888753
No 209
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=87.88 E-value=0.75 Score=37.87 Aligned_cols=69 Identities=22% Similarity=0.261 Sum_probs=38.7
Q ss_pred HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccCC-Cccch--hccccChHHHHHHHHHHhCCCEEEEEch
Q 023800 6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDAC-GMPGA--TNLKESEVLESIVKKQASDGRLYAAICV 82 (277)
Q Consensus 6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~g-G~~~~--~~~~~~~~~~~~l~~~~~~g~~i~aiC~ 82 (277)
....|++.|+++.++.... .+....++-+ | | |.... ..+++ ..+.++++ +.+++|.+||.
T Consensus 16 ~~~~l~~~g~~~~~v~~~~--~~~~~d~iIl-P----------G~G~~~~~~~~l~~-~~l~~~i~---~~~~PilGICl 78 (196)
T PRK13170 16 VKFAIERLGYEPVVSRDPD--VILAADKLFL-P----------GVGTAQAAMDQLRE-RELIDLIK---ACTQPVLGICL 78 (196)
T ss_pred HHHHHHHCCCeEEEECCHH--HhCCCCEEEE-C----------CCCchHHHHHHHHH-cChHHHHH---HcCCCEEEECH
Confidence 4567888888888886331 2222222222 1 4 32111 11111 23444444 45899999999
Q ss_pred hHHHHHHHcC
Q 023800 83 FLAVALGSWG 92 (277)
Q Consensus 83 g~~~~La~aG 92 (277)
|.. +|+.+.
T Consensus 79 G~Q-ll~~~~ 87 (196)
T PRK13170 79 GMQ-LLGERS 87 (196)
T ss_pred HHH-HHhhhc
Confidence 999 899874
No 210
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=87.58 E-value=1.5 Score=38.86 Aligned_cols=74 Identities=24% Similarity=0.361 Sum_probs=51.5
Q ss_pred HHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcC-Cc-chHHhhhcCHHHHHHHHHHHH
Q 023800 176 AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPG-GL-GGAQAFAKSKKLVNMLKKQKE 253 (277)
Q Consensus 176 ~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpG-G~-~~~~~~~~~~~~~~~l~~~~~ 253 (277)
+-.+..+++.-||+++.+-.. .|+ ...|-+|+|| |. ....+......+.+-|++..+
T Consensus 14 ~~si~nal~hlg~~i~~v~~P-------------------~DI--~~a~rLIfPGVGnfg~~~D~L~~~Gf~eplr~Yie 72 (541)
T KOG0623|consen 14 VRSIRNALRHLGFSIKDVQTP-------------------GDI--LNADRLIFPGVGNFGPAMDVLNRTGFAEPLRKYIE 72 (541)
T ss_pred HHHHHHHHHhcCceeeeccCc-------------------hhh--ccCceEeecCcccchHHHHHHhhhhhHHHHHHHHh
Confidence 345556667777777666332 222 3468899998 32 222334556788899999999
Q ss_pred cCCcEEEEchhhHHhhhh
Q 023800 254 SNRPYGAICASPALVLEP 271 (277)
Q Consensus 254 ~~~~i~aiC~G~~~lLa~ 271 (277)
.||++.+||.|-. +|-+
T Consensus 73 sgkPfmgicvGlQ-aLF~ 89 (541)
T KOG0623|consen 73 SGKPFMGICVGLQ-ALFD 89 (541)
T ss_pred cCCCeEeehhhHH-HHhc
Confidence 9999999999999 6744
No 211
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=86.59 E-value=6.4 Score=32.85 Aligned_cols=89 Identities=19% Similarity=0.148 Sum_probs=59.2
Q ss_pred CeEEEEecCCCchhhHHHHHHHHHhCC---CeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh
Q 023800 161 PQILVPIANGSEEMEAVIIIDILRRAK---ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA 237 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~~~~~~~l~~a~---~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~ 237 (277)
++|.|.--+|.+...+-..++.|+.-- +.+..|.. + .+. +..|.+ .--+|++|||.. ..-
T Consensus 1 m~VlVYn~~GvSp~~lkhtv~sLr~~~~p~y~v~~V~~--~---------~Li-~EpW~~----~T~lLV~pGGaD-lpY 63 (253)
T COG4285 1 MNVLVYNGLGVSPYSLKHTVRSLRLFAPPYYAVDRVDA--Q---------FLI-KEPWEE----TTLLLVFPGGAD-LPY 63 (253)
T ss_pred CceEEeCCCCCChHHHHHHHHHHHhhccchheEEEeee--h---------eee-cCcchh----ceEEEEecCCCC-chH
Confidence 468888888999999999998888642 35555532 2 122 222443 345899999953 221
Q ss_pred h-hcCHHHHHHHHHHHHcCCcEEEEchhhH
Q 023800 238 F-AKSKKLVNMLKKQKESNRPYGAICASPA 266 (277)
Q Consensus 238 ~-~~~~~~~~~l~~~~~~~~~i~aiC~G~~ 266 (277)
. .-++--.+-|....++|..-.+||.|..
T Consensus 64 ~~~l~g~g~a~i~~yvk~GG~fLGiCAG~Y 93 (253)
T COG4285 64 VQVLQGLGTARIKNYVKEGGNFLGICAGGY 93 (253)
T ss_pred HHHhcchhhhhHHHHHhcCCeEEEEecccc
Confidence 1 2234445667778899999999999986
No 212
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=86.56 E-value=2.1 Score=35.02 Aligned_cols=69 Identities=16% Similarity=0.244 Sum_probs=42.4
Q ss_pred HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC-----CCccchhccccChHHHHHHHHHHhCCCEEEEE
Q 023800 6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA-----CGMPGATNLKESEVLESIVKKQASDGRLYAAI 80 (277)
Q Consensus 6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~-----gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~ai 80 (277)
.++.|++.|+++.++..+. .+... +.+...+ ||...+. +......+++. .+++++|.+|
T Consensus 15 l~~~l~~~~~~~~v~~~~~-~~~~~-----------~~~~~~~~iilsgGP~~~~---~~~~~~~~i~~-~~~~~PiLGI 78 (191)
T PRK06774 15 LYQYFCELGTEVMVKRNDE-LQLTD-----------IEQLAPSHLVISPGPCTPN---EAGISLAVIRH-FADKLPILGV 78 (191)
T ss_pred HHHHHHHCCCcEEEEeCCC-CCHHH-----------HHhcCCCeEEEcCCCCChH---hCCCchHHHHH-hcCCCCEEEE
Confidence 4677888899998888653 11110 1111111 6632332 22334566665 4678999999
Q ss_pred chhHHHHHHHc
Q 023800 81 CVFLAVALGSW 91 (277)
Q Consensus 81 C~g~~~~La~a 91 (277)
|-|.. +|+.+
T Consensus 79 C~G~Q-lla~~ 88 (191)
T PRK06774 79 CLGHQ-ALGQA 88 (191)
T ss_pred CHHHH-HHHHH
Confidence 99999 89887
No 213
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=86.49 E-value=0.48 Score=38.33 Aligned_cols=94 Identities=10% Similarity=0.088 Sum_probs=50.6
Q ss_pred CCCchhhHHHHHHHHHhCC--CeEEEEeeCCCceEEc-ccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcC----
Q 023800 169 NGSEEMEAVIIIDILRRAK--ANVVVASVADKLEILA-SCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKS---- 241 (277)
Q Consensus 169 ~g~~~~e~~~~~~~l~~a~--~~v~~vs~~~~~~v~~-~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~---- 241 (277)
|.-..+|. .....|.... .+++++-+... ..+. .....-.--.+++++....||.+||.|.. ...+...
T Consensus 8 p~k~~TE~-qf~rlL~~~~~qv~v~~~~~~~h-~~~~~~~~~l~~~Y~~~~~i~~~~yDGlIITGAp--ve~~~fe~v~Y 83 (175)
T cd03131 8 PDKIQTER-QFLRLLGNTPLQVEITFIRPSSH-SSKNTPPEHVNRFYETFDDIRDAKFDGLIVTGAP--VEHLPFEQVDY 83 (175)
T ss_pred CCcHHHHH-HHHHHHhcCCccceEEEEecCCC-CCCCCCHHHHHHhccCHHHccccCCCEEEEeCCC--cccCCccccch
Confidence 43345553 3445554443 45666655543 1111 00000001135666666789999999974 2222222
Q ss_pred -HHHHHHHHHHHHcCCcEEEEchhhH
Q 023800 242 -KKLVNMLKKQKESNRPYGAICASPA 266 (277)
Q Consensus 242 -~~~~~~l~~~~~~~~~i~aiC~G~~ 266 (277)
+++.+.+...-++......+|-|+.
T Consensus 84 w~El~~i~dwa~~~v~stl~iCWgaq 109 (175)
T cd03131 84 WEELTEILDWAKTHVTSTLFSCWAAM 109 (175)
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 2444444444477899999999998
No 214
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=86.20 E-value=3.1 Score=33.63 Aligned_cols=70 Identities=17% Similarity=0.187 Sum_probs=41.1
Q ss_pred HHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchhccccChHHHHHHHHHHhCCCEEEEEchh
Q 023800 7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLKESEVLESIVKKQASDGRLYAAICVF 83 (277)
Q Consensus 7 ~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g 83 (277)
...|++.|+++.++..+...... + .+.+++.. ||. +.. .++ .....+++...+++++.+||-|
T Consensus 15 ~~~l~~~G~~~~~~~~~~~~~~~--------~--~~~~~dgvil~gG~-~~~--~~~-~~~~~i~~~~~~~~PvlGIC~G 80 (184)
T cd01743 15 VQYLRELGAEVVVVRNDEITLEE--------L--ELLNPDAIVISPGP-GHP--EDA-GISLEIIRALAGKVPILGVCLG 80 (184)
T ss_pred HHHHHHcCCceEEEeCCCCCHHH--------H--hhcCCCEEEECCCC-CCc--ccc-hhHHHHHHHHhcCCCEEEECHh
Confidence 45667789999888876421000 0 11222221 552 221 112 2444555556788999999999
Q ss_pred HHHHHHHc
Q 023800 84 LAVALGSW 91 (277)
Q Consensus 84 ~~~~La~a 91 (277)
.. +|+.+
T Consensus 81 ~Q-lla~~ 87 (184)
T cd01743 81 HQ-AIAEA 87 (184)
T ss_pred HH-HHHHH
Confidence 99 89987
No 215
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=86.09 E-value=1.7 Score=45.89 Aligned_cols=39 Identities=10% Similarity=0.059 Sum_probs=35.2
Q ss_pred cccChHHHHHHHHHH-hCCCEEEEEchhHHHHHH-HcCCCCC
Q 023800 57 LKESEVLESIVKKQA-SDGRLYAAICVFLAVALG-SWGLLKG 96 (277)
Q Consensus 57 ~~~~~~~~~~l~~~~-~~g~~i~aiC~g~~~~La-~aGll~g 96 (277)
+..++.+.+-+++|+ ++++++.+||.|-. +|. ..||+.|
T Consensus 1126 i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ-~L~~~~gllp~ 1166 (1310)
T TIGR01735 1126 ILFNPRLRDQFQAFFKRPDTFSLGVCNGCQ-MLSNLLEWIPG 1166 (1310)
T ss_pred HHhChHHHHHHHHHHhCCCceEEEecHHHH-HHHHHhCcCCC
Confidence 567889999999999 88999999999999 899 9999975
No 216
>PRK05670 anthranilate synthase component II; Provisional
Probab=86.00 E-value=2.2 Score=34.82 Aligned_cols=68 Identities=16% Similarity=0.224 Sum_probs=41.7
Q ss_pred HHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC-----CCccchhccccChHHHHHHHHHHhCCCEEEEEc
Q 023800 7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA-----CGMPGATNLKESEVLESIVKKQASDGRLYAAIC 81 (277)
Q Consensus 7 ~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~-----gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC 81 (277)
.+.|++.|+++.++..+... .. .++....+ ||...+. +.....++++++ .++++|.+||
T Consensus 16 ~~~l~~~g~~~~v~~~~~~~-~~-----------~~~~~~~dglIlsgGpg~~~---d~~~~~~~l~~~-~~~~PvLGIC 79 (189)
T PRK05670 16 VQYLGELGAEVVVYRNDEIT-LE-----------EIEALNPDAIVLSPGPGTPA---EAGISLELIREF-AGKVPILGVC 79 (189)
T ss_pred HHHHHHCCCcEEEEECCCCC-HH-----------HHHhCCCCEEEEcCCCCChH---HcchHHHHHHHh-cCCCCEEEEC
Confidence 45677789999888875311 00 00111111 6632232 223466788764 5779999999
Q ss_pred hhHHHHHHHc
Q 023800 82 VFLAVALGSW 91 (277)
Q Consensus 82 ~g~~~~La~a 91 (277)
-|.. +|+.+
T Consensus 80 lG~Q-lla~a 88 (189)
T PRK05670 80 LGHQ-AIGEA 88 (189)
T ss_pred HHHH-HHHHH
Confidence 9999 88887
No 217
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=85.47 E-value=1 Score=37.17 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=28.2
Q ss_pred ChHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800 60 SEVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (277)
Q Consensus 60 ~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (277)
.+...+||++....+++|.+||.|.. +||.+
T Consensus 65 ~~~~~~~i~~~~~p~~pvLGIC~G~Q-l~A~~ 95 (198)
T COG0518 65 LPREKDLIKDAGVPGKPVLGICLGHQ-LLAKA 95 (198)
T ss_pred chhHHHHHHHhCCCCCCEEEEChhHH-HHHHH
Confidence 67889999999999999999999999 88875
No 218
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=85.30 E-value=2.5 Score=34.83 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=22.4
Q ss_pred HHHHHHH-HhCCCEEEEEchhHHHHHHHcC
Q 023800 64 ESIVKKQ-ASDGRLYAAICVFLAVALGSWG 92 (277)
Q Consensus 64 ~~~l~~~-~~~g~~i~aiC~g~~~~La~aG 92 (277)
...|+++ .+.+++|.+||.|.. +|+.++
T Consensus 62 ~~~l~~~~~~~~~pvlGiC~G~Q-~l~~~~ 90 (201)
T PRK13152 62 IEALKEQVLVQKKPILGICLGMQ-LFLERG 90 (201)
T ss_pred HHHHHHHHHhCCCcEEEECHhHH-HHhhcc
Confidence 4445554 588999999999999 899884
No 219
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=85.24 E-value=1 Score=36.86 Aligned_cols=30 Identities=13% Similarity=0.181 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800 61 EVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (277)
Q Consensus 61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (277)
....++++++.+.+++|.+||.|.. +|+.+
T Consensus 87 ~~~~~~~~~~~~~~~PilgiC~G~Q-~l~~~ 116 (189)
T cd01745 87 AFELALLRAALERGKPILGICRGMQ-LLNVA 116 (189)
T ss_pred HHHHHHHHHHHHCCCCEEEEcchHH-HHHHH
Confidence 3457899999999999999999999 77775
No 220
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=85.24 E-value=1.2 Score=36.31 Aligned_cols=42 Identities=17% Similarity=0.064 Sum_probs=31.2
Q ss_pred CCc-cchhccccChHHHHHHHHHHhCC-CEEEEEchhHHHHHHHc
Q 023800 49 CGM-PGATNLKESEVLESIVKKQASDG-RLYAAICVFLAVALGSW 91 (277)
Q Consensus 49 gG~-~~~~~~~~~~~~~~~l~~~~~~g-~~i~aiC~g~~~~La~a 91 (277)
||. ..+..+.....+.+-|+++.++| ++|-+-|+|.. +||+.
T Consensus 41 GGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlI-lLa~~ 84 (188)
T PF01174_consen 41 GGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLI-LLAKE 84 (188)
T ss_dssp SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHH-HHEEE
T ss_pred CCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHH-Hhhhh
Confidence 663 22334555668899999999998 99999999998 77764
No 221
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=84.79 E-value=2.3 Score=35.52 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHhCCCEEEEEchhHHHHHHHcC
Q 023800 61 EVLESIVKKQASDGRLYAAICVFLAVALGSWG 92 (277)
Q Consensus 61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aG 92 (277)
..+.++|+++.++++++.+||.|.. +|+++.
T Consensus 59 ~gl~~~i~~~~~~~~pilGiC~G~Q-~l~~~~ 89 (210)
T PRK14004 59 TGLRSTIDKHVESGKPLFGICIGFQ-ILFESS 89 (210)
T ss_pred cCcHHHHHHHHHcCCCEEEECHhHH-HHHHhc
Confidence 3588889999999999999999999 899864
No 222
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=84.70 E-value=1.3 Score=36.05 Aligned_cols=73 Identities=18% Similarity=0.193 Sum_probs=46.3
Q ss_pred HHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchhccccChHHHHHHHHHHhCCCEEEEEchh
Q 023800 7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLKESEVLESIVKKQASDGRLYAAICVF 83 (277)
Q Consensus 7 ~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g 83 (277)
...|++.|.++.++..+...... .+ .+.+.+.. ||..... +.+....++++..+.++++.+||-|
T Consensus 14 ~~~l~~~~~~~~v~~~~~~~~~~--------~~-~~~~~d~iii~Gg~~~~~---d~~~~~~~i~~~~~~~~PilGIC~G 81 (192)
T PF00117_consen 14 VRALRELGIDVEVVRVDSDFEEP--------LE-DLDDYDGIIISGGPGSPY---DIEGLIELIREARERKIPILGICLG 81 (192)
T ss_dssp HHHHHHTTEEEEEEETTGGHHHH--------HH-HTTTSSEEEEECESSSTT---SHHHHHHHHHHHHHTTSEEEEETHH
T ss_pred HHHHHHCCCeEEEEECCCchhhh--------hh-hhcCCCEEEECCcCCccc---cccccccccccccccceEEEEEeeh
Confidence 45677778888888765311000 00 11222211 6632221 1578889999999999999999999
Q ss_pred HHHHHHHcC
Q 023800 84 LAVALGSWG 92 (277)
Q Consensus 84 ~~~~La~aG 92 (277)
-. +||.+-
T Consensus 82 ~Q-~la~~~ 89 (192)
T PF00117_consen 82 HQ-ILAHAL 89 (192)
T ss_dssp HH-HHHHHT
T ss_pred hh-hhHHhc
Confidence 99 888863
No 223
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=84.54 E-value=3.7 Score=33.03 Aligned_cols=70 Identities=10% Similarity=0.081 Sum_probs=39.2
Q ss_pred HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccchhccccChHHHHHHHHHHhCCCEEEEEch
Q 023800 6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGATNLKESEVLESIVKKQASDGRLYAAICV 82 (277)
Q Consensus 6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~ 82 (277)
..+.|++.|+++.++..+.+ .. +..+.+++.. ||. ........+. +.+...+.++++.+||.
T Consensus 14 ~~~~l~~~G~~~~~~~~~~~--~~---------~~~~~~~dgvIl~Gg~-~~~~~~~~~~---~~~~~~~~~~PilGIC~ 78 (181)
T cd01742 14 IARRVRELGVYSEILPNTTP--LE---------EIKLKNPKGIILSGGP-SSVYEEDAPR---VDPEIFELGVPVLGICY 78 (181)
T ss_pred HHHHHHhcCceEEEecCCCC--hh---------hhcccCCCEEEECCCc-ccccccccch---hhHHHHhcCCCEEEEcH
Confidence 45677788888877775421 00 1122222222 552 2211111122 33444556999999999
Q ss_pred hHHHHHHHc
Q 023800 83 FLAVALGSW 91 (277)
Q Consensus 83 g~~~~La~a 91 (277)
|.. +|+.+
T Consensus 79 G~Q-ll~~~ 86 (181)
T cd01742 79 GMQ-LIAKA 86 (181)
T ss_pred HHH-HHHHh
Confidence 999 89985
No 224
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=84.48 E-value=1.6 Score=39.59 Aligned_cols=31 Identities=10% Similarity=0.029 Sum_probs=27.0
Q ss_pred ChHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800 60 SEVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (277)
Q Consensus 60 ~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (277)
.+...++++++.+++++|.+||.|.. +|+.+
T Consensus 234 ~~~~~~~i~~~~~~~~PilGIClG~Q-lLa~a 264 (360)
T PRK12564 234 LDYAIEMIRELLEKKIPIFGICLGHQ-LLALA 264 (360)
T ss_pred HHHHHHHHHHHHHcCCeEEEECHHHH-HHHHH
Confidence 36778899999988999999999999 77775
No 225
>PRK09065 glutamine amidotransferase; Provisional
Probab=84.19 E-value=1.3 Score=37.58 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800 61 EVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (277)
Q Consensus 61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (277)
..+.+||++..+.+++|.+||-|.. +|+.+
T Consensus 75 ~~~~~~i~~~~~~~~PvlGIC~G~Q-lla~a 104 (237)
T PRK09065 75 ERTADWLRQAAAAGMPLLGICYGHQ-LLAHA 104 (237)
T ss_pred HHHHHHHHHHHHCCCCEEEEChhHH-HHHHH
Confidence 5678999999999999999999999 88886
No 226
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=82.96 E-value=1.1 Score=36.93 Aligned_cols=29 Identities=17% Similarity=0.191 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800 62 VLESIVKKQASDGRLYAAICVFLAVALGSW 91 (277)
Q Consensus 62 ~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (277)
.+.++++++.+++++|.+||.|.. +|+.+
T Consensus 60 ~~~~~i~~~~~~~~PvlGiC~G~Q-ll~~~ 88 (199)
T PRK13181 60 GLDEALKEHVEKKQPVLGICLGMQ-LLFES 88 (199)
T ss_pred ChHHHHHHHHHCCCCEEEECHhHH-Hhhhh
Confidence 467889999999999999999999 89997
No 227
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=82.93 E-value=2.3 Score=34.97 Aligned_cols=71 Identities=17% Similarity=0.225 Sum_probs=42.9
Q ss_pred hHHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccCCC-ccc--hhccccChHHHHHHHHHHhCCCEEEEEc
Q 023800 5 ITIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDACG-MPG--ATNLKESEVLESIVKKQASDGRLYAAIC 81 (277)
Q Consensus 5 ~~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~gG-~~~--~~~~~~~~~~~~~l~~~~~~g~~i~aiC 81 (277)
...+.|++.|+++.++... ..+....++ |-| |+ ... +..+++ ..+.+.|++ ..|+++.+||
T Consensus 14 s~~~al~~~g~~~~~v~~~--~~l~~~D~l-IlP----------G~g~~~~~~~~L~~-~gl~~~i~~--~~g~PvlGIC 77 (192)
T PRK13142 14 NVKRAIEHLGYEVVVSNTS--KIIDQAETI-ILP----------GVGHFKDAMSEIKR-LNLNAILAK--NTDKKMIGIC 77 (192)
T ss_pred HHHHHHHHcCCCEEEEeCH--HHhccCCEE-EEC----------CCCCHHHHHHHHHH-CCcHHHHHH--hCCCeEEEEC
Confidence 4567788888888877533 233332222 222 33 211 112222 235677776 5689999999
Q ss_pred hhHHHHHHHcC
Q 023800 82 VFLAVALGSWG 92 (277)
Q Consensus 82 ~g~~~~La~aG 92 (277)
.|-. +|++..
T Consensus 78 lGmQ-lL~~~~ 87 (192)
T PRK13142 78 LGMQ-LMYEHS 87 (192)
T ss_pred HHHH-HHhhhc
Confidence 9999 898876
No 228
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=82.69 E-value=1.5 Score=36.68 Aligned_cols=71 Identities=17% Similarity=0.197 Sum_probs=44.8
Q ss_pred HHHHHhCCCeEEEEeeCCCceeecCCCCEEecCc--cccccccC---CCccchhccccChHHHHHHHHHHhCCCEEEEEc
Q 023800 7 IDVLRRSGADVVVASVEKQLRVDACHGVKIVADA--LVSNCRDA---CGMPGATNLKESEVLESIVKKQASDGRLYAAIC 81 (277)
Q Consensus 7 ~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~--~~~~~~~~---gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC 81 (277)
.+.|++.|+++.++..+. +.. ++. .+++.+.. ||...+ .+.....+|+++..+++++|.+||
T Consensus 17 ~~~l~~~G~~~~~~~~~~--~~~--------~~~~~~~~~~dgliisGGp~~~---~~~~~~~~~i~~~~~~~~PiLGIC 83 (214)
T PRK07765 17 VQYLGQLGVEAEVWRNDD--PRL--------ADEAAVAAQFDGVLLSPGPGTP---ERAGASIDMVRACAAAGTPLLGVC 83 (214)
T ss_pred HHHHHHcCCcEEEEECCC--cCH--------HHHHHhhcCCCEEEECCCCCCh---hhcchHHHHHHHHHhCCCCEEEEc
Confidence 356777888888887653 110 010 01122211 663222 223456789999999999999999
Q ss_pred hhHHHHHHHc
Q 023800 82 VFLAVALGSW 91 (277)
Q Consensus 82 ~g~~~~La~a 91 (277)
-|.. +|+.+
T Consensus 84 ~G~Q-lla~a 92 (214)
T PRK07765 84 LGHQ-AIGVA 92 (214)
T ss_pred cCHH-HHHHH
Confidence 9999 78775
No 229
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=82.30 E-value=3.6 Score=40.86 Aligned_cols=31 Identities=10% Similarity=0.096 Sum_probs=27.1
Q ss_pred ChHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800 60 SEVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (277)
Q Consensus 60 ~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (277)
+....+++++..+.++++.+||-|.. +|+.+
T Consensus 574 d~~~~~~I~~~~~~~iPvLGICLG~Q-lLa~a 604 (717)
T TIGR01815 574 DFDVAGTIDAALARGLPVFGVCLGLQ-GMVEA 604 (717)
T ss_pred hcccHHHHHHHHHCCCCEEEECHHHH-HHhhh
Confidence 34567889999999999999999999 89887
No 230
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=81.73 E-value=11 Score=31.40 Aligned_cols=97 Identities=14% Similarity=0.206 Sum_probs=61.8
Q ss_pred CCeEEEEecCCCchhh---HHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHH
Q 023800 160 SPQILVPIANGSEEME---AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ 236 (277)
Q Consensus 160 ~~kV~ill~~g~~~~e---~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~ 236 (277)
.++|+++=+-+..... .--..++|+..|.+++-++.... + ...+++. ..+-|+|+|.||.. ..
T Consensus 32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~-~-----------~~~Ie~~-l~~~d~IyVgGGNT-F~ 97 (224)
T COG3340 32 RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKP-P-----------LAAIENK-LMKADIIYVGGGNT-FN 97 (224)
T ss_pred CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCC-C-----------HHHHHHh-hhhccEEEECCchH-HH
Confidence 3578887654433222 23467788888888777665432 1 1222221 23579999999953 22
Q ss_pred hh--hcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800 237 AF--AKSKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (277)
Q Consensus 237 ~~--~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~ 271 (277)
-+ ...-.+.+.|++..++|++.++...|+. +-..
T Consensus 98 LL~~lke~gld~iIr~~vk~G~~YiG~SAGA~-ia~p 133 (224)
T COG3340 98 LLQELKETGLDDIIRERVKAGTPYIGWSAGAN-IAGP 133 (224)
T ss_pred HHHHHHHhCcHHHHHHHHHcCCceEEeccCce-eecC
Confidence 12 2344688899999999999999998887 4433
No 231
>PRK00758 GMP synthase subunit A; Validated
Probab=81.07 E-value=3.9 Score=33.13 Aligned_cols=27 Identities=11% Similarity=-0.014 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800 61 EVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (277)
Q Consensus 61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (277)
..+.+|++ +.+++|.+||.|.. +|+.+
T Consensus 57 ~~~~~~l~---~~~~PilGIC~G~Q-~L~~a 83 (184)
T PRK00758 57 GNCPEYLK---ELDVPILGICLGHQ-LIAKA 83 (184)
T ss_pred cccHHHHH---hCCCCEEEEeHHHH-HHHHh
Confidence 34566666 45899999999999 89987
No 232
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=80.37 E-value=16 Score=32.25 Aligned_cols=87 Identities=16% Similarity=0.229 Sum_probs=53.4
Q ss_pred CCeEEEEecCCCch--hhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh
Q 023800 160 SPQILVPIANGSEE--MEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA 237 (277)
Q Consensus 160 ~~kV~ill~~g~~~--~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~ 237 (277)
++||+++.-++-.. ..+....+.|++.|+++.+...... . .+... .... ....+|++++.||.+
T Consensus 3 ~kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~-~----~~~~~----~~~~-~~~~~d~vi~~GGDG---- 68 (305)
T PRK02645 3 LKQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPK-D----NPYPV----FLAS-ASELIDLAIVLGGDG---- 68 (305)
T ss_pred cCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchh-h----ccccc----hhhc-cccCcCEEEEECCcH----
Confidence 46799998876433 2245567778889999877543321 1 01110 0111 123589999999964
Q ss_pred hhcCHHHHHHHHHHHHcCCcEEEEch-hh
Q 023800 238 FAKSKKLVNMLKKQKESNRPYGAICA-SP 265 (277)
Q Consensus 238 ~~~~~~~~~~l~~~~~~~~~i~aiC~-G~ 265 (277)
-+.+.++.+...++++.+|-. |.
T Consensus 69 -----T~l~~~~~~~~~~~pv~gin~~G~ 92 (305)
T PRK02645 69 -----TVLAAARHLAPHDIPILSVNVGGH 92 (305)
T ss_pred -----HHHHHHHHhccCCCCEEEEecCCc
Confidence 234555555567899999987 54
No 233
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=79.62 E-value=4.9 Score=31.34 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=59.4
Q ss_pred CCCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCC----ceEEcccCcEEEeCcchhhhccCCccEEEEcCCcc
Q 023800 158 DNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADK----LEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLG 233 (277)
Q Consensus 158 ~~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~----~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~ 233 (277)
....+|.++=.+|+...=.-......|..+.+..++-...- +...+..|+++. + +..++ +.|+|++-||..
T Consensus 17 ~~~~kIvf~Gs~GvCtPFaeL~~Y~iR~~~~~~~FiP~~d~e~a~~l~~~~~Gmq~~-~---~~~~~-~~D~vVlmGGLA 91 (147)
T PF09897_consen 17 KDGEKIVFIGSPGVCTPFAELFAYAIRDKVKEQYFIPDADLEKARKLEVTDIGMQVL-G---EKKDP-HPDVVVLMGGLA 91 (147)
T ss_dssp TT-SEEEEEE-TTTTHHHHHHHHHHTTTS--EEEEEETT-GGG-EEEEEETTEEE-E-E---EE--S--EEEEEEEGGGG
T ss_pred cCCCeEEEeCCCcccccHHHHHHHHHhhhccceeecCCCChhhhheeeccCcccccc-c---ccCCC-CCCEEEEEcccc
Confidence 35579999999998754333333334444446655543211 123455666641 1 11223 389999999974
Q ss_pred hHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCCC
Q 023800 234 GAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGLL 275 (277)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGlL 275 (277)
-+..-...+++.+.+.+..... |.+||-=+. +.++|..
T Consensus 92 MP~~~v~~e~v~~li~ki~~~~--iiGiCFms~--F~kagW~ 129 (147)
T PF09897_consen 92 MPKSGVTPEDVNELIKKISPKK--IIGICFMSM--FEKAGWD 129 (147)
T ss_dssp STTTS--HHHHHHHHHHHEEEE--EEEEEETTH--HHHTTHH
T ss_pred cCCCCCCHHHHHHHHHHhCcCC--EEEEehHHH--HHHcCCc
Confidence 2332234457777777766554 999998776 6777753
No 234
>PRK13566 anthranilate synthase; Provisional
Probab=79.50 E-value=4.9 Score=39.97 Aligned_cols=31 Identities=10% Similarity=0.039 Sum_probs=27.5
Q ss_pred ChHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800 60 SEVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (277)
Q Consensus 60 ~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (277)
+..+.+++++..+++++|.+||-|.. +|+.+
T Consensus 584 d~~~~~lI~~a~~~~iPILGIClG~Q-lLa~a 614 (720)
T PRK13566 584 DFDCKATIDAALARNLPIFGVCLGLQ-AIVEA 614 (720)
T ss_pred hCCcHHHHHHHHHCCCcEEEEehhHH-HHHHH
Confidence 34578999999999999999999999 88887
No 235
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=79.27 E-value=2.8 Score=34.97 Aligned_cols=30 Identities=17% Similarity=0.096 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800 61 EVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (277)
Q Consensus 61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (277)
..+.+.|++..++|++++++|.|+. ++.+.
T Consensus 101 ~~l~~~l~~~~~~g~~i~G~SAGa~-i~~~~ 130 (212)
T cd03146 101 HGLDAILKAALERGVVYIGWSAGSN-CWFPS 130 (212)
T ss_pred cCHHHHHHHHHHCCCEEEEECHhHH-hhCCC
Confidence 3678888988899999999999998 88775
No 236
>PRK06455 riboflavin synthase; Provisional
Probab=78.68 E-value=5.3 Score=31.50 Aligned_cols=92 Identities=17% Similarity=0.252 Sum_probs=52.6
Q ss_pred CCeEEEEecCCCchhh-HHHHHHHHHhCC--CeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcC--Ccch
Q 023800 160 SPQILVPIANGSEEME-AVIIIDILRRAK--ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPG--GLGG 234 (277)
Q Consensus 160 ~~kV~ill~~g~~~~e-~~~~~~~l~~a~--~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpG--G~~~ 234 (277)
++||+|+... |+... +.+..+.|++.+ .++.++..-|. .-+++.+...+.. ..||++|.-| |...
T Consensus 1 ~~kigIV~s~-fn~~~L~~gAi~~L~~~g~~~~I~v~~VPGa------~ELP~aakkL~~~---~~yDaVIaLG~VG~t~ 70 (155)
T PRK06455 1 MMKIGIADTT-FARVDMGSAAIDELRKLDPSAKIIRYTVPGI------KDLPVAAKKLIEE---EGCDIVMALGMPGPTE 70 (155)
T ss_pred CcEEEEEEEe-cchHHHHHHHHHHHHhcCCCCceEEEECCCH------HHHHHHHHHHHhc---CCCCEEEEecceeccC
Confidence 3688988754 33323 578999999944 66666655442 2233333333322 4699999877 3222
Q ss_pred HHhhhcCHHHHHHHHHHHHcCCcEEEE
Q 023800 235 AQAFAKSKKLVNMLKKQKESNRPYGAI 261 (277)
Q Consensus 235 ~~~~~~~~~~~~~l~~~~~~~~~i~ai 261 (277)
...+..+.-.....+-..+.+++|+-+
T Consensus 71 h~d~Va~~vS~GL~~lsL~t~~PVi~v 97 (155)
T PRK06455 71 KDKYCAHEASIGLIMAQLMTNKHIIEV 97 (155)
T ss_pred cchhHHHHHHHHHHHHHhhhCCCEEEE
Confidence 222333344444555566777777654
No 237
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=78.48 E-value=3.8 Score=37.80 Aligned_cols=42 Identities=29% Similarity=0.400 Sum_probs=33.6
Q ss_pred CCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhH
Q 023800 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPA 266 (277)
Q Consensus 221 ~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~ 266 (277)
...|.|+||||++ .+--+..+...+.+.+++.|..+||-|-.
T Consensus 362 ~~adGilvPGGFG----~RGveG~i~Aak~ARen~iP~LGiCLGmQ 403 (585)
T KOG2387|consen 362 KSADGILVPGGFG----DRGVEGKILAAKWARENKIPFLGICLGMQ 403 (585)
T ss_pred ccCCeEEeCCccc----ccchhHHHHHHHHHHhcCCCeEeeehhhh
Confidence 4689999999985 22345666777778889999999999988
No 238
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=78.11 E-value=17 Score=31.67 Aligned_cols=89 Identities=17% Similarity=0.228 Sum_probs=52.2
Q ss_pred CeEEEEecCCC-chhh-HHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh
Q 023800 161 PQILVPIANGS-EEME-AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF 238 (277)
Q Consensus 161 ~kV~ill~~g~-~~~e-~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~ 238 (277)
+||+|+.-++- ...+ +....++|+..|+++.+...... .. +. .. .....+....++|.+++.||.+
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~-~~----~~-~~-~~~~~~~~~~~~d~vi~iGGDG----- 68 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYE-HL----PE-FS-EEDVLPLEEMDVDFIIAIGGDG----- 68 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hc----Cc-cc-ccccccccccCCCEEEEEeCcH-----
Confidence 57899877664 3333 44566778899999888643221 10 00 00 0011111123689999999964
Q ss_pred hcCHHHHHHHHHHHHcCCcEEEEchhhH
Q 023800 239 AKSKKLVNMLKKQKESNRPYGAICASPA 266 (277)
Q Consensus 239 ~~~~~~~~~l~~~~~~~~~i~aiC~G~~ 266 (277)
-+++.++ ....+.+|.+|-.|..
T Consensus 69 ----TlL~a~~-~~~~~~pi~gIn~G~l 91 (277)
T PRK03708 69 ----TILRIEH-KTKKDIPILGINMGTL 91 (277)
T ss_pred ----HHHHHHH-hcCCCCeEEEEeCCCC
Confidence 2234455 5566889998888873
No 239
>PRK09271 flavodoxin; Provisional
Probab=77.87 E-value=20 Score=28.20 Aligned_cols=91 Identities=16% Similarity=0.051 Sum_probs=47.7
Q ss_pred CeEEEEecCCC--chhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh
Q 023800 161 PQILVPIANGS--EEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF 238 (277)
Q Consensus 161 ~kV~ill~~g~--~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~ 238 (277)
+||.|+..... ...=.-.+.+.|+..|.++++...... .+ ..... +..++|+|+|..........
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~-~~----------~~~~~--~~~~~d~vilgt~T~~~G~~ 67 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQ-TL----------AEYPL--DPEDYDLYLLGTWTDNAGRT 67 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEecccc-cc----------ccccc--CcccCCEEEEECcccCCCcC
Confidence 36777765433 222234456888888988876654321 10 00011 12468999887521100111
Q ss_pred h-cCHHHHHHHHHHHHcCCcEEEEchh
Q 023800 239 A-KSKKLVNMLKKQKESNRPYGAICAS 264 (277)
Q Consensus 239 ~-~~~~~~~~l~~~~~~~~~i~aiC~G 264 (277)
+ .-..+.++|+....++|.++.+++|
T Consensus 68 p~~~~~f~~~l~~~~~~~k~~avfgsg 94 (160)
T PRK09271 68 PPEMKRFIAELAETIGKPPNVAVFGTG 94 (160)
T ss_pred CHHHHHHHHHHHHHhccCCeEEEEecC
Confidence 1 1234444555444478889988887
No 240
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=76.94 E-value=32 Score=34.91 Aligned_cols=97 Identities=13% Similarity=0.193 Sum_probs=64.8
Q ss_pred CCeEEEEecCCCc-hhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh-
Q 023800 160 SPQILVPIANGSE-EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA- 237 (277)
Q Consensus 160 ~~kV~ill~~g~~-~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~- 237 (277)
.+||+|+--.|.+ +.|. ...|..|||+..=|.-+.- +.-+.++ ++|-.|+.|||+...+.
T Consensus 1058 ~PkVAilREeGvNg~rEM---a~af~~AgF~~~DVtmtDl----------L~G~~~l-----d~frGlaf~GGFSYaDvL 1119 (1320)
T KOG1907|consen 1058 APKVAILREEGVNGDREM---AAAFYAAGFETVDVTMTDL----------LAGRHHL-----DDFRGLAFCGGFSYADVL 1119 (1320)
T ss_pred CCceEEeeccccccHHHH---HHHHHHcCCceeeeeeehh----------hcCceeH-----hHhcceeeecCcchHhhh
Confidence 4699999998876 3444 4567779998765554321 1112222 45778888888753332
Q ss_pred ---------hhcCHHHHHHHHHHHH-cCCcEEEEchhhHHhhhhCCCC
Q 023800 238 ---------FAKSKKLVNMLKKQKE-SNRPYGAICASPALVLEPHGLL 275 (277)
Q Consensus 238 ---------~~~~~~~~~~l~~~~~-~~~~i~aiC~G~~~lLa~aGlL 275 (277)
...++.+.....+|++ +...=.+||+|-. +++..|-+
T Consensus 1120 gSakGWAasil~ne~v~~QF~~F~~R~DtFslGiCNGCQ-lms~Lg~i 1166 (1320)
T KOG1907|consen 1120 GSAKGWAASILFNESVRSQFEAFFNRQDTFSLGICNGCQ-LMSRLGWI 1166 (1320)
T ss_pred ccccchhhheeeChhHHHHHHHHhcCCCceeeecccHhH-HHHHhccc
Confidence 3456777777777765 4556789999999 89998854
No 241
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=75.49 E-value=19 Score=28.03 Aligned_cols=62 Identities=23% Similarity=0.141 Sum_probs=45.6
Q ss_pred chhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHH
Q 023800 172 EEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQ 251 (277)
Q Consensus 172 ~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~ 251 (277)
...++......|.+.|+.+++++++.. .++|++||+|.-. ...++..+.|+++
T Consensus 24 y~~~~~~~~~~l~~~gi~~d~v~~~~~---------------------l~~y~~vi~P~~~------~~~~~~~~~l~~~ 76 (154)
T cd03143 24 YLDLALALYRALRELGIPVDVVPPDAD---------------------LSGYKLVVLPDLY------LLSDATAAALRAY 76 (154)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCC---------------------cccCCEEEECchh------cCCHHHHHHHHHH
Confidence 345678889999999999999974321 1369999999753 1346888899999
Q ss_pred HHcCCcEEE
Q 023800 252 KESNRPYGA 260 (277)
Q Consensus 252 ~~~~~~i~a 260 (277)
.++|..+.+
T Consensus 77 v~~GG~li~ 85 (154)
T cd03143 77 VENGGTLVA 85 (154)
T ss_pred HHCCCEEEE
Confidence 888765544
No 242
>PRK07567 glutamine amidotransferase; Provisional
Probab=75.30 E-value=3.9 Score=34.87 Aligned_cols=27 Identities=11% Similarity=0.276 Sum_probs=22.3
Q ss_pred HHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800 64 ESIVKKQASDGRLYAAICVFLAVALGSW 91 (277)
Q Consensus 64 ~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (277)
.++++...+++++|.+||-|.. +|+.+
T Consensus 83 ~~~i~~~~~~~~PvLGIC~G~Q-lla~a 109 (242)
T PRK07567 83 SGLLDEVVARDFPFLGACYGVG-TLGHH 109 (242)
T ss_pred HHHHHHHHhcCCCEEEEchhHH-HHHHH
Confidence 4455555589999999999999 89987
No 243
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=75.23 E-value=20 Score=28.91 Aligned_cols=83 Identities=14% Similarity=0.141 Sum_probs=48.4
Q ss_pred eEEEEecCCCchh-h-HHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhh
Q 023800 162 QILVPIANGSEEM-E-AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA 239 (277)
Q Consensus 162 kV~ill~~g~~~~-e-~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~ 239 (277)
|+.|+.+...--+ + .-.+.+.|.. |.+++++..... ... +..+||.||+.++. ..-.
T Consensus 2 kilIvY~S~~G~T~~iA~~Ia~~l~~-g~~v~~~~~~~~---------------~~~--~l~~yD~vIlGspi---~~G~ 60 (177)
T PRK11104 2 KTLILYSSRDGQTRKIASYIASELKE-GIQCDVVNLHRI---------------EEP--DLSDYDRVVIGASI---RYGH 60 (177)
T ss_pred cEEEEEECCCChHHHHHHHHHHHhCC-CCeEEEEEhhhc---------------Ccc--CHHHCCEEEEECcc---ccCC
Confidence 5666655432222 2 2334566666 777777754321 001 23469998886643 1123
Q ss_pred cCHHHHHHHHHHHH--cCCcEEEEchhh
Q 023800 240 KSKKLVNMLKKQKE--SNRPYGAICASP 265 (277)
Q Consensus 240 ~~~~~~~~l~~~~~--~~~~i~aiC~G~ 265 (277)
..+.+.+|+++... ++|+++.+|.|.
T Consensus 61 ~~~~~~~fl~~~~~~l~~K~v~~F~v~l 88 (177)
T PRK11104 61 FHSALYKFVKKHATQLNQMPSAFFSVNL 88 (177)
T ss_pred cCHHHHHHHHHHHHHhCCCeEEEEEech
Confidence 45788888877543 688999998774
No 244
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=72.65 E-value=18 Score=27.10 Aligned_cols=68 Identities=16% Similarity=0.248 Sum_probs=41.9
Q ss_pred CCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHH
Q 023800 170 GSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLK 249 (277)
Q Consensus 170 g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~ 249 (277)
.............|+.+||++...+..-. ++.....+...+.|+|.+.+-. ......-+++++.|+
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~vp------------~e~~~~~a~~~~~d~V~iS~~~--~~~~~~~~~~~~~L~ 75 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQT------------PEEIVEAAIQEDVDVIGLSSLS--GGHMTLFPEVIELLR 75 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCCCC------------HHHHHHHHHHcCCCEEEEcccc--hhhHHHHHHHHHHHH
Confidence 35666677788899999999988866431 2223333334678999998753 222223345555555
Q ss_pred HH
Q 023800 250 KQ 251 (277)
Q Consensus 250 ~~ 251 (277)
+.
T Consensus 76 ~~ 77 (122)
T cd02071 76 EL 77 (122)
T ss_pred hc
Confidence 54
No 245
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=72.30 E-value=4.4 Score=34.81 Aligned_cols=30 Identities=17% Similarity=0.032 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800 61 EVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (277)
Q Consensus 61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (277)
....++++...+++++|.+||-|.. +|+.+
T Consensus 94 ~~e~~li~~a~~~~~PILGICrG~Q-llnva 123 (254)
T PRK11366 94 LLSMALINAALERRIPIFAICRGLQ-ELVVA 123 (254)
T ss_pred HHHHHHHHHHHHCCCCEEEECHhHH-HHHHH
Confidence 4567899999999999999999999 78776
No 246
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=72.13 E-value=6.7 Score=37.01 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=27.6
Q ss_pred cChHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800 59 ESEVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (277)
Q Consensus 59 ~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (277)
.+..+.+.|+++.++|++|.+||.|-. +|.+.
T Consensus 304 ~~~~~~~~i~~~~~~G~pvlgiCgG~q-~Lg~~ 335 (475)
T TIGR00313 304 KQSGFAEEILDFAKEGGIVIGICGGYQ-MLGKE 335 (475)
T ss_pred HhcChHHHHHHHHHcCCcEEEEcHHHH-Hhhhh
Confidence 455578889999999999999999999 88874
No 247
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=71.00 E-value=16 Score=30.14 Aligned_cols=66 Identities=21% Similarity=0.137 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHH
Q 023800 173 EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQK 252 (277)
Q Consensus 173 ~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~ 252 (277)
.-++...+..|++.|+.+++++++. + .+.|.+|++|.-. .-+++..+.|+++.
T Consensus 29 ~~~~~~~y~al~~~gi~vDvv~~~~-------------------d--L~~Ykllv~P~~~------~l~~~~~~~L~~yV 81 (207)
T PF08532_consen 29 RDQVRGWYRALRELGIPVDVVSPDD-------------------D--LSGYKLLVLPSLY------ILSPEFAERLRAYV 81 (207)
T ss_dssp HHHHHHHHHHHHTTT--EEEE-TTS-----------------------TT-SEEEES--S------C--HHH---HHHHH
T ss_pred HHHHHHHHHHHHHcCCceEEecCcC-------------------C--cccCcEEEEeeEE------EEChHHHHHHHHHH
Confidence 3446788889999999999998642 1 2469999999743 24678888999999
Q ss_pred HcCCcE-EEEchhh
Q 023800 253 ESNRPY-GAICASP 265 (277)
Q Consensus 253 ~~~~~i-~aiC~G~ 265 (277)
++|..+ +.-++|.
T Consensus 82 ~~GG~li~~~~tg~ 95 (207)
T PF08532_consen 82 ENGGTLILTPRTGV 95 (207)
T ss_dssp T-SS-EEE-TTTT-
T ss_pred HCCCEEEEEcccCC
Confidence 886554 4444443
No 248
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=70.96 E-value=24 Score=29.30 Aligned_cols=106 Identities=18% Similarity=0.247 Sum_probs=65.6
Q ss_pred CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEccc--------Cc--EEEeCcchhhhccCCccEEEEc-
Q 023800 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASC--------QV--KLVADMLIDEAAKLSYDLIVLP- 229 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~--------g~--~i~~~~~~~~~~~~~~D~livp- 229 (277)
.+|.|++-+|-+--|-......|...|++|++.-....++..+.. +. .+... ...+ .+.++|+||=.
T Consensus 50 ~~v~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~~~~l~~~~~v~~~-~~~~-~~~~~dvIVDal 127 (203)
T COG0062 50 RRVLVLCGPGNNGGDGLVAARHLKAAGYAVTVLLLGDPKKLKTEAARANLKSLGIGGVVKIK-ELED-EPESADVIVDAL 127 (203)
T ss_pred CEEEEEECCCCccHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHhhcCCcceeec-cccc-ccccCCEEEEec
Confidence 589999999999999999999999999999888765442333221 11 11111 1111 23456655422
Q ss_pred -C-CcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCC
Q 023800 230 -G-GLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHG 273 (277)
Q Consensus 230 -G-G~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aG 273 (277)
| |.. -.-.+++...+....+++++|.|+-.=+= +-+.+|
T Consensus 128 fG~G~~----g~lrep~a~~Ie~iN~~~~pivAVDiPSG-l~~dtG 168 (203)
T COG0062 128 FGTGLS----GPLREPFASLIEAINASGKPIVAVDIPSG-LDADTG 168 (203)
T ss_pred eecCCC----CCCccHHHHHHHHHHhcCCceEEEeCCCC-cCCCCC
Confidence 2 221 11245667777878899999999865444 334333
No 249
>CHL00101 trpG anthranilate synthase component 2
Probab=70.58 E-value=4.1 Score=33.24 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=19.9
Q ss_pred HHHHHhCCCEEEEEchhHHHHHHHc
Q 023800 67 VKKQASDGRLYAAICVFLAVALGSW 91 (277)
Q Consensus 67 l~~~~~~g~~i~aiC~g~~~~La~a 91 (277)
+.+..+.++++.+||-|.. +|+.+
T Consensus 65 i~~~~~~~~PiLGIClG~Q-lla~~ 88 (190)
T CHL00101 65 VISSYAPYIPILGVCLGHQ-SIGYL 88 (190)
T ss_pred HHHHhcCCCcEEEEchhHH-HHHHH
Confidence 3345678999999999999 89885
No 250
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=70.19 E-value=48 Score=26.38 Aligned_cols=102 Identities=20% Similarity=0.232 Sum_probs=57.8
Q ss_pred CCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCce----------EEcccCcEEEeCcchhhhc--cCCccEE
Q 023800 159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLE----------ILASCQVKLVADMLIDEAA--KLSYDLI 226 (277)
Q Consensus 159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~----------v~~~~g~~i~~~~~~~~~~--~~~~D~l 226 (277)
+.++|.|++-+|-+--+-......|...|++|.++....... .....|..+.......+.. .+.+|+|
T Consensus 24 ~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~dlI 103 (169)
T PF03853_consen 24 KGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDSDEDLSEALEPADLI 103 (169)
T ss_dssp TT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCCGSGGGHHGSCESEE
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccccchhhcccccccEE
Confidence 447899999999999999999999999999998854432101 1122456665443333221 1246665
Q ss_pred EEc--C-CcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchh
Q 023800 227 VLP--G-GLGGAQAFAKSKKLVNMLKKQKESNRPYGAICAS 264 (277)
Q Consensus 227 ivp--G-G~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G 264 (277)
|=. | |.. . .-.+.+.++++...+...++.||-.=
T Consensus 104 IDal~G~G~~--~--~l~~~~~~~i~~iN~~~~~viAiDiP 140 (169)
T PF03853_consen 104 IDALFGTGFS--G--PLRGPIAELIDWINASRAPVIAIDIP 140 (169)
T ss_dssp EEES-STTGG--S--CGSTCHHHHHHHHHHHCSEEEEESS-
T ss_pred EEecccCCCC--C--CcCHHHHHHHHHHhccCCcEEEecCC
Confidence 433 2 221 1 11223444444444447888888543
No 251
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=69.19 E-value=19 Score=29.63 Aligned_cols=77 Identities=10% Similarity=0.218 Sum_probs=46.4
Q ss_pred CeEEEEecCC-CchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhh
Q 023800 161 PQILVPIANG-SEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA 239 (277)
Q Consensus 161 ~kV~ill~~g-~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~ 239 (277)
.||.+...+| ............|+..||++...+.+- .++.-.+.+...++|+|.+..-.. ....
T Consensus 83 ~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~------------p~~~l~~~~~~~~~d~v~lS~~~~--~~~~ 148 (201)
T cd02070 83 GKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDV------------PPEEFVEAVKEHKPDILGLSALMT--TTMG 148 (201)
T ss_pred CeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCC------------CHHHHHHHHHHcCCCEEEEecccc--ccHH
Confidence 5777776664 556667888999999999997776432 223333334445788887765321 2223
Q ss_pred cCHHHHHHHHHH
Q 023800 240 KSKKLVNMLKKQ 251 (277)
Q Consensus 240 ~~~~~~~~l~~~ 251 (277)
.-.++++.||+.
T Consensus 149 ~~~~~i~~lr~~ 160 (201)
T cd02070 149 GMKEVIEALKEA 160 (201)
T ss_pred HHHHHHHHHHHC
Confidence 334455555544
No 252
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=68.23 E-value=11 Score=31.10 Aligned_cols=64 Identities=20% Similarity=0.298 Sum_probs=53.0
Q ss_pred chhccccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHcCCCCCCC------CCCeEcCCCCCCHHHHHHHHHHHhcC
Q 023800 53 GATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK------DGKVVTTRGPGTPMEFVVALVEQLYG 124 (277)
Q Consensus 53 ~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~------dg~~iT~~g~~~~~~~a~~li~~l~g 124 (277)
+++++.-.+.++.||......||..-=--.||. ||+.||+ .|.+++.. |. .+++...-++.+.|
T Consensus 96 PM~Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~------GLl~gKKv~~l~srGG~y~~~-p~-~~~~~~~YLr~ilg 165 (202)
T COG1182 96 PMYNFNIPAQLKAYIDHIAVAGKTFKYTENGPV------GLLTGKKVLILTSRGGIYSEG-PA-SMDHGEPYLRTILG 165 (202)
T ss_pred cccccCCCHHHHHHHHHHhcCCceEEeccCCcc------cccCCceEEEEECCCCcCCCC-cc-chhhhHHHHHHHhh
Confidence 588888899999999999999999998888997 9999988 66777665 65 47888777777655
No 253
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=68.20 E-value=5 Score=32.69 Aligned_cols=69 Identities=14% Similarity=0.173 Sum_probs=41.8
Q ss_pred HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC-----CCccchhccccChHHHHHHHHHHhCCCEEEEE
Q 023800 6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA-----CGMPGATNLKESEVLESIVKKQASDGRLYAAI 80 (277)
Q Consensus 6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~-----gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~ai 80 (277)
.++.|++.|+++.++..+. .+.. .+.....+ ||...+. +.....++++. .+.+++|.+|
T Consensus 15 l~~~l~~~g~~v~v~~~~~-~~~~-----------~~~~~~~d~iils~GPg~p~---~~~~~~~~~~~-~~~~~PiLGI 78 (187)
T PRK08007 15 LYQYFCELGADVLVKRNDA-LTLA-----------DIDALKPQKIVISPGPCTPD---EAGISLDVIRH-YAGRLPILGV 78 (187)
T ss_pred HHHHHHHCCCcEEEEeCCC-CCHH-----------HHHhcCCCEEEEcCCCCChH---HCCccHHHHHH-hcCCCCEEEE
Confidence 4567788888888877642 1110 01111111 5632232 23445667776 5678999999
Q ss_pred chhHHHHHHHc
Q 023800 81 CVFLAVALGSW 91 (277)
Q Consensus 81 C~g~~~~La~a 91 (277)
|-|.. +|+.+
T Consensus 79 ClG~Q-~la~a 88 (187)
T PRK08007 79 CLGHQ-AMAQA 88 (187)
T ss_pred CHHHH-HHHHH
Confidence 99999 88886
No 254
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=67.94 E-value=5.5 Score=32.57 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=42.5
Q ss_pred HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC-----CCccchhccccChHHHHHHHHHHhCCCEEEEE
Q 023800 6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA-----CGMPGATNLKESEVLESIVKKQASDGRLYAAI 80 (277)
Q Consensus 6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~-----gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~ai 80 (277)
..+.|++.|+++.++..+... ... +.+.+.+ ||...+. ++.....+++. .+.+++|.+|
T Consensus 15 ~~~~l~~~g~~~~~~~~~~~~-~~~-----------~~~~~~~~iilsgGp~~~~---~~~~~~~~i~~-~~~~~PiLGI 78 (193)
T PRK08857 15 LYQYFCELGAQVKVVRNDEID-IDG-----------IEALNPTHLVISPGPCTPN---EAGISLQAIEH-FAGKLPILGV 78 (193)
T ss_pred HHHHHHHCCCcEEEEECCCCC-HHH-----------HhhCCCCEEEEeCCCCChH---HCcchHHHHHH-hcCCCCEEEE
Confidence 456788889999988866211 100 1111111 5532222 23334677766 5789999999
Q ss_pred chhHHHHHHHc
Q 023800 81 CVFLAVALGSW 91 (277)
Q Consensus 81 C~g~~~~La~a 91 (277)
|-|.. +|+.+
T Consensus 79 ClG~Q-lia~a 88 (193)
T PRK08857 79 CLGHQ-AIAQV 88 (193)
T ss_pred cHHHH-HHHHH
Confidence 99999 88875
No 255
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=67.86 E-value=60 Score=28.76 Aligned_cols=97 Identities=18% Similarity=0.173 Sum_probs=55.6
Q ss_pred CCCeEEEEecCCC-chhhH-HHHHHHHHhCCCeEEEEeeCCCceEEccc-----CcEEEeCcchhhhccCCccEEEEcCC
Q 023800 159 NSPQILVPIANGS-EEMEA-VIIIDILRRAKANVVVASVADKLEILASC-----QVKLVADMLIDEAAKLSYDLIVLPGG 231 (277)
Q Consensus 159 ~~~kV~ill~~g~-~~~e~-~~~~~~l~~a~~~v~~vs~~~~~~v~~~~-----g~~i~~~~~~~~~~~~~~D~livpGG 231 (277)
++++|+|+.-++- ...++ ....++|...|+++.+...... ...... |..+.......+. ....|++++-||
T Consensus 4 ~~~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi~lGG 81 (306)
T PRK03372 4 ASRRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAV-DLGATHPAPDDFRAMEVVDADPDA-ADGCELVLVLGG 81 (306)
T ss_pred CccEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhh-hhcccccccccccccccccchhhc-ccCCCEEEEEcC
Confidence 4578999977654 33333 4456678888998877654321 110000 1111000001121 135799999999
Q ss_pred cchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhH
Q 023800 232 LGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPA 266 (277)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~ 266 (277)
.+ -++...+.+...+.||.+|-.|..
T Consensus 82 DG---------T~L~aar~~~~~~~PilGIN~G~l 107 (306)
T PRK03372 82 DG---------TILRAAELARAADVPVLGVNLGHV 107 (306)
T ss_pred CH---------HHHHHHHHhccCCCcEEEEecCCC
Confidence 64 334566666677889999988865
No 256
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=67.73 E-value=3.7 Score=33.33 Aligned_cols=42 Identities=19% Similarity=0.090 Sum_probs=33.0
Q ss_pred CCc-cchhccccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800 49 CGM-PGATNLKESEVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (277)
Q Consensus 49 gG~-~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (277)
||. .....+.+...+.+-|+++..+|+++.+-|+|.. +||+-
T Consensus 46 GGESTTi~rL~~~~gl~e~l~~~~~~G~Pv~GTCAGlI-lLake 88 (194)
T COG0311 46 GGESTTIGRLLKRYGLLEPLREFIADGLPVFGTCAGLI-LLAKE 88 (194)
T ss_pred CccHHHHHHHHHHcCcHHHHHHHHHcCCceEEechhhh-hhhhh
Confidence 763 1234455677788899999999999999999998 88864
No 257
>PRK05568 flavodoxin; Provisional
Probab=67.18 E-value=53 Score=24.91 Aligned_cols=86 Identities=13% Similarity=0.159 Sum_probs=49.4
Q ss_pred CeEEEEecCCCchhh--HHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh
Q 023800 161 PQILVPIANGSEEME--AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF 238 (277)
Q Consensus 161 ~kV~ill~~g~~~~e--~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~ 238 (277)
+++.|+.+...--++ .-.+.+.++..|.+++++..... . ..++ .++|.|++..... ....
T Consensus 2 ~~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~-~--------------~~~~--~~~d~iilgsp~y-~~~~ 63 (142)
T PRK05568 2 KKINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEA-S--------------VDDV--KGADVVALGSPAM-GDEV 63 (142)
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCC-C--------------HHHH--HhCCEEEEECCcc-Cccc
Confidence 467777665443333 34456777788888888865432 1 1233 4689988865421 1111
Q ss_pred hcCHHHHHHHHHHH--HcCCcEEEEchh
Q 023800 239 AKSKKLVNMLKKQK--ESNRPYGAICAS 264 (277)
Q Consensus 239 ~~~~~~~~~l~~~~--~~~~~i~aiC~G 264 (277)
.....+..|+.+.. .++|.++.+|+.
T Consensus 64 ~~~~~~~~f~~~~~~~~~~k~~~~f~t~ 91 (142)
T PRK05568 64 LEEGEMEPFVESISSLVKGKKLVLFGSY 91 (142)
T ss_pred ccchhHHHHHHHhhhhhCCCEEEEEEcc
Confidence 11234566666543 368888888873
No 258
>PRK05637 anthranilate synthase component II; Provisional
Probab=66.26 E-value=6.8 Score=32.60 Aligned_cols=68 Identities=13% Similarity=0.175 Sum_probs=40.0
Q ss_pred HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC-----CCccchhccccChHHHHHHHHHHhCCCEEEEE
Q 023800 6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA-----CGMPGATNLKESEVLESIVKKQASDGRLYAAI 80 (277)
Q Consensus 6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~-----gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~ai 80 (277)
.++.|++.|+++.++..+. +... +.....+ ||.... .+.....++++... .+++|.+|
T Consensus 17 l~~~l~~~g~~~~v~~~~~--~~~~-----------l~~~~~~~iIlsgGPg~~---~d~~~~~~li~~~~-~~~PiLGI 79 (208)
T PRK05637 17 LVDAFAVAGYKCTVFRNTV--PVEE-----------ILAANPDLICLSPGPGHP---RDAGNMMALIDRTL-GQIPLLGI 79 (208)
T ss_pred HHHHHHHCCCcEEEEeCCC--CHHH-----------HHhcCCCEEEEeCCCCCH---HHhhHHHHHHHHHh-CCCCEEEE
Confidence 4567778888887777542 1100 0011111 663222 22233456676544 57999999
Q ss_pred chhHHHHHHHc
Q 023800 81 CVFLAVALGSW 91 (277)
Q Consensus 81 C~g~~~~La~a 91 (277)
|-|.. +|+.+
T Consensus 80 ClG~Q-lla~a 89 (208)
T PRK05637 80 CLGFQ-ALLEH 89 (208)
T ss_pred cHHHH-HHHHH
Confidence 99999 89987
No 259
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=65.88 E-value=44 Score=25.53 Aligned_cols=42 Identities=10% Similarity=0.059 Sum_probs=28.2
Q ss_pred CCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchh
Q 023800 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICAS 264 (277)
Q Consensus 221 ~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G 264 (277)
.+||.|++..... ..-..++.+..|+++...++|.++.+++|
T Consensus 49 ~~~d~iilgs~t~--~~g~~p~~~~~fl~~l~~~~k~~avfgtg 90 (140)
T TIGR01754 49 ENYDLVFLGTWTW--ERGRTPDEMKDFIAELGYKPSNVAIFGTG 90 (140)
T ss_pred hhCCEEEEEcCee--CCCcCCHHHHHHHHHhcccCCEEEEEEcC
Confidence 4689988876421 11123446777887766688999999887
No 260
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=64.61 E-value=7.1 Score=35.41 Aligned_cols=30 Identities=17% Similarity=0.027 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800 60 SEVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (277)
Q Consensus 60 ~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (277)
.+...++++++.+ +++|.+||-|.. +|+.+
T Consensus 230 ~~~~i~~i~~~~~-~~PILGIClG~Q-lLa~a 259 (358)
T TIGR01368 230 VEPAIETIRKLLE-KIPIFGICLGHQ-LLALA 259 (358)
T ss_pred HHHHHHHHHHHHc-CCCEEEECHHHH-HHHHH
Confidence 4667888998887 899999999999 78775
No 261
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=64.48 E-value=75 Score=27.92 Aligned_cols=92 Identities=15% Similarity=0.120 Sum_probs=52.9
Q ss_pred CCeEEEEecCCC-chhh-HHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh
Q 023800 160 SPQILVPIANGS-EEME-AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA 237 (277)
Q Consensus 160 ~~kV~ill~~g~-~~~e-~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~ 237 (277)
+++|+|+.-++- ...+ +....++|+..|+++.+...... .. ...... .....+.. +.+|++++.||.+
T Consensus 5 ~~~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~-~~-~~~~~~---~~~~~~~~-~~~d~vi~~GGDG---- 74 (291)
T PRK02155 5 FKTVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTAR-NI-GLTGYP---ALTPEEIG-ARADLAVVLGGDG---- 74 (291)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hc-Cccccc---ccChhHhc-cCCCEEEEECCcH----
Confidence 467999877655 3333 44566678888888766432221 11 000000 01122221 3689999999964
Q ss_pred hhcCHHHHHHHHHHHHcCCcEEEEchhhH
Q 023800 238 FAKSKKLVNMLKKQKESNRPYGAICASPA 266 (277)
Q Consensus 238 ~~~~~~~~~~l~~~~~~~~~i~aiC~G~~ 266 (277)
-+++.++.+...+.++.+|-.|..
T Consensus 75 -----t~l~~~~~~~~~~~pilGIn~G~l 98 (291)
T PRK02155 75 -----TMLGIGRQLAPYGVPLIGINHGRL 98 (291)
T ss_pred -----HHHHHHHHhcCCCCCEEEEcCCCc
Confidence 234555655567888888888763
No 262
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=64.43 E-value=44 Score=27.76 Aligned_cols=30 Identities=23% Similarity=0.119 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800 61 EVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (277)
Q Consensus 61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (277)
..+.+++++.....+.|.+||-|=. ++|++
T Consensus 80 ~KLcs~~kkld~mkkkvlGICFGHQ-iiara 109 (245)
T KOG3179|consen 80 KKLCSFVKKLDFMKKKVLGICFGHQ-IIARA 109 (245)
T ss_pred HHHHHHHHHHHhhccceEEEeccHH-HHHHh
Confidence 3577888888888899999999999 88886
No 263
>COG2379 GckA Putative glycerate kinase [Carbohydrate transport and metabolism]
Probab=64.18 E-value=31 Score=31.53 Aligned_cols=151 Identities=20% Similarity=0.161 Sum_probs=91.6
Q ss_pred CCCEEecCccccccccC----CCccchh--ccccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHc---CC-CCCCC---
Q 023800 32 HGVKIVADALVSNCRDA----CGMPGAT--NLKESEVLESIVKKQASDGRLYAAICVFLAVALGSW---GL-LKGLK--- 98 (277)
Q Consensus 32 ~g~~v~~d~~~~~~~~~----gG~~~~~--~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a---Gl-l~g~~--- 98 (277)
.|+-|.+...-..++.. ++||-++ .+...++++++++..-++..+++-||.|.- .|.+. |+ |++.+
T Consensus 65 ~GvVVt~~g~~~~~~~ieViea~HPvPDe~s~~asrrlL~~v~~l~e~D~Vi~LISGGGS-aL~e~P~eGitL~d~~avn 143 (422)
T COG2379 65 AGVVVTPYGYGGPCPRIEVIEAGHPVPDEASLKASRRLLELVSGLTEDDLVIVLISGGGS-ALLELPAEGITLEDLIAVN 143 (422)
T ss_pred CceEeccCccCCCCCceeEEeCCCCCCCchhHHHHHHHHHHhcCCCCCcEEEEEEeCCch-hhccCCccCCCHHHHHHHH
Confidence 46667766655544432 7765443 355678888999888888999999999887 66654 33 33322
Q ss_pred -----------------------------------------------CCCeEcCCCCC----CHHHHHHHHHHHhcChhH
Q 023800 99 -----------------------------------------------DGKVVTTRGPG----TPMEFVVALVEQLYGKGK 127 (277)
Q Consensus 99 -----------------------------------------------dg~~iT~~g~~----~~~~~a~~li~~l~g~~~ 127 (277)
|.--+-++||+ ++.+-++++++++. -+.
T Consensus 144 ~~LL~sGA~I~emNtVRkhLS~VKGGrLA~a~~pA~VvsliiSDVpGDd~~~IASGPTv~D~tt~~DAlavl~ry~-i~~ 222 (422)
T COG2379 144 RALLKSGAPISEMNTVRKHLSRVKGGRLAAAAKPAKVVSLIISDVPGDDPSVIASGPTVPDPTTREDALAVLERYG-IAL 222 (422)
T ss_pred HHHHHcCCChHHHHHHHHHHhhccchHHHHhcCCCeEEEEEEccCCCCCHhhcccCCCCCCCCchHHHHHHHHHhc-ccc
Confidence 55444566654 35788999999965 447
Q ss_pred HHHHhhcccccccCCCchhhcccCccccccCCCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEee
Q 023800 128 ADEVSGARVMRANHGDEFTIAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASV 195 (277)
Q Consensus 128 a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~ 195 (277)
-+.+.+++.-++.++.+..... | ...++-++..+. ..+-.....++..|++..+.+.
T Consensus 223 p~~v~~~l~~~~~~t~~~~d~~-------~-~~v~~~iIasn~---~sleaaa~~~~~~G~~a~Il~d 279 (422)
T COG2379 223 PESVRAHLESERAETPKPGDER-------F-ANVENRIIASNR---LSLEAAASEARALGFKAVILGD 279 (422)
T ss_pred cHHHHHHHhhhcccCCCCCccc-------c-ccceeEEEechH---HHHHHHHHHHHhcCCeeEEeec
Confidence 7778777775443333211111 1 112455555443 2333455666677777777654
No 264
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=63.78 E-value=9.7 Score=32.33 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=27.1
Q ss_pred ccChHHHHHHHHHHhCCCEEEEEchhHHHHHHH
Q 023800 58 KESEVLESIVKKQASDGRLYAAICVFLAVALGS 90 (277)
Q Consensus 58 ~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~ 90 (277)
.+|.--+.++|...++|++|.+||=|.. +|.-
T Consensus 91 ~RD~~E~aLi~~ALe~~iPILgICRG~Q-llNV 122 (243)
T COG2071 91 ERDAFELALIRAALERGIPILGICRGLQ-LLNV 122 (243)
T ss_pred cccHHHHHHHHHHHHcCCCEEEEccchH-HHHH
Confidence 3456678899999999999999999999 6654
No 265
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=63.28 E-value=39 Score=29.92 Aligned_cols=143 Identities=15% Similarity=0.091 Sum_probs=72.8
Q ss_pred HHHHHhhcccccc--cCCCchhhcccC-ccccccCCCCeEEEEec----C-CCchhhHHHHHHHHHhCCC-eEEEEeeCC
Q 023800 127 KADEVSGARVMRA--NHGDEFTIAEFN-PVQWTFDNSPQILVPIA----N-GSEEMEAVIIIDILRRAKA-NVVVASVAD 197 (277)
Q Consensus 127 ~a~~v~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~kV~ill~----~-g~~~~e~~~~~~~l~~a~~-~v~~vs~~~ 197 (277)
.|+++++.+..+. ....+|+..|.. +...++ ..+.|.|+.. | +-..+|+....++++++|. ++.++-|=-
T Consensus 12 la~~ia~~lg~~~~~~~~~~FpdGE~~v~i~~~v-~g~~v~iv~~s~~~~~~~~l~el~~~~~a~r~~ga~~i~~v~PYl 90 (308)
T TIGR01251 12 LAQKVAKNLGLPLGDVEVKRFPDGELYVRINESV-RGKDVFIIQQSTSAPVNDNLMELLIMIDALKRASAKSITAVIPYY 90 (308)
T ss_pred HHHHHHHHhCCeeeeeEEEECCCCCEEEEECCCC-CCCeEEEEeCCCCCCccHHHHHHHHHHHHHHHcCCCeEEEEEEec
Confidence 4444444443332 223334444443 233333 3467777721 1 4457899999999999996 466665421
Q ss_pred Cc---eEEcccCcEEEeCcchhhhccCCccEEEEcCCcc---------hHHhhhcCHHHHHHHHHHHHcCCcEEEEchhh
Q 023800 198 KL---EILASCQVKLVADMLIDEAAKLSYDLIVLPGGLG---------GAQAFAKSKKLVNMLKKQKESNRPYGAICASP 265 (277)
Q Consensus 198 ~~---~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~---------~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~ 265 (277)
.. --....|-.+.....-.-+..-.+|-++.-.-+. +.+.+...+.+.+|+++...+...|.+.-.|+
T Consensus 91 ~Y~RqDr~~~~ge~is~~~~a~ll~~~g~d~vit~DlHs~~~~~~f~ip~~~l~a~~~l~~~i~~~~~~~~viv~pd~g~ 170 (308)
T TIGR01251 91 GYARQDKKFKSREPISAKLVANLLETAGADRVLTVDLHSPQIQGFFDVPVDNLYASPVLAEYLKKKILDNPVVVSPDAGG 170 (308)
T ss_pred ccchhccccCCCCCchHHHHHHHHHHcCCCEEEEecCChHHhcCcCCCceecccCHHHHHHHHHhhCCCCCEEEEECCch
Confidence 10 0011122222211111111112355555543221 12223445788899987644566899999999
Q ss_pred HHhhhh
Q 023800 266 ALVLEP 271 (277)
Q Consensus 266 ~~lLa~ 271 (277)
. .+|+
T Consensus 171 ~-~~A~ 175 (308)
T TIGR01251 171 V-ERAK 175 (308)
T ss_pred H-HHHH
Confidence 8 6764
No 266
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=62.91 E-value=2.7 Score=33.30 Aligned_cols=42 Identities=17% Similarity=0.125 Sum_probs=29.0
Q ss_pred ccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEch
Q 023800 219 AKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICA 263 (277)
Q Consensus 219 ~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~ 263 (277)
+.++||.|+|.. + .+.....+.+..||++..-+||.|+-.|+
T Consensus 70 d~~~YD~I~lG~--P-vW~~~~~~pv~tFL~~~~~~gK~v~~F~T 111 (156)
T PF12682_consen 70 DLSDYDTIFLGT--P-VWWGTPPPPVRTFLEQYDFSGKTVIPFCT 111 (156)
T ss_dssp -GGG-SEEEEEE--E-EETTEE-CHHHHHHHCTTTTTSEEEEEEE
T ss_pred CcccCCEEEEec--h-HHcCCCCHHHHHHHHhcCCCCCcEEEEEe
Confidence 346899999953 2 33344567889999987778999998876
No 267
>PRK11914 diacylglycerol kinase; Reviewed
Probab=62.65 E-value=31 Score=30.32 Aligned_cols=37 Identities=19% Similarity=0.003 Sum_probs=23.5
Q ss_pred CCeEEEEecCCC---c-hhhHHHHHHHHHhCCCeEEEEeeC
Q 023800 160 SPQILVPIANGS---E-EMEAVIIIDILRRAKANVVVASVA 196 (277)
Q Consensus 160 ~~kV~ill~~g~---~-~~e~~~~~~~l~~a~~~v~~vs~~ 196 (277)
++|+.+++-|.- . .-.+....+.|+..|+++.++..+
T Consensus 8 ~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~ 48 (306)
T PRK11914 8 IGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGT 48 (306)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeC
Confidence 378888776531 2 222335677888899988766544
No 268
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=62.35 E-value=11 Score=31.94 Aligned_cols=30 Identities=13% Similarity=0.055 Sum_probs=25.1
Q ss_pred ChHHHHHHHHHHhCCCEEEEEchhHHHHHHH
Q 023800 60 SEVLESIVKKQASDGRLYAAICVFLAVALGS 90 (277)
Q Consensus 60 ~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~ 90 (277)
.+....+++...+.++++.+||.|.. +|+.
T Consensus 70 ~~~~~~~i~~~~~~~~PvlGIClG~Q-~l~~ 99 (235)
T cd01746 70 VEGKILAIKYARENNIPFLGICLGMQ-LAVI 99 (235)
T ss_pred hhhHHHHHHHHHHCCceEEEEEhHHH-HHHH
Confidence 45667889999999999999999998 6654
No 269
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=61.64 E-value=25 Score=28.92 Aligned_cols=77 Identities=14% Similarity=0.181 Sum_probs=48.1
Q ss_pred CeEEEEecCC-CchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhh
Q 023800 161 PQILVPIANG-SEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA 239 (277)
Q Consensus 161 ~kV~ill~~g-~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~ 239 (277)
.+|.+...+| ............|+.+||++...+.+-. ++.-.+.+...++|+|.+..-.. .
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp------------~e~~v~~~~~~~pd~v~lS~~~~--~--- 147 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVP------------IDTVVEKVKKEKPLMLTGSALMT--T--- 147 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCC------------HHHHHHHHHHcCCCEEEEccccc--c---
Confidence 4676666654 6778888899999999999998876532 22333334445788888875421 1
Q ss_pred cCHHHHHHHHHHHHc
Q 023800 240 KSKKLVNMLKKQKES 254 (277)
Q Consensus 240 ~~~~~~~~l~~~~~~ 254 (277)
..+.+.++++...+.
T Consensus 148 ~~~~~~~~i~~l~~~ 162 (197)
T TIGR02370 148 TMYGQKDINDKLKEE 162 (197)
T ss_pred CHHHHHHHHHHHHHc
Confidence 223344455544444
No 270
>PRK05569 flavodoxin; Provisional
Probab=60.98 E-value=45 Score=25.31 Aligned_cols=88 Identities=17% Similarity=0.159 Sum_probs=49.3
Q ss_pred CeEEEEecCCCchhh--HHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh
Q 023800 161 PQILVPIANGSEEME--AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF 238 (277)
Q Consensus 161 ~kV~ill~~g~~~~e--~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~ 238 (277)
.||.|+.+.+.--++ .-.+.+-++..|.++++...... ...++ .++|.|++...... ...
T Consensus 2 ~ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~---------------~~~~~--~~~d~iilgsPty~-~~~ 63 (141)
T PRK05569 2 KKVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADA---------------KVEDV--LEADAVAFGSPSMD-NNN 63 (141)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcC---------------CHHHH--hhCCEEEEECCCcC-CCc
Confidence 467777765443333 23355667777888877765432 11233 46899988653211 101
Q ss_pred hcCHHHHHHHHHHH---HcCCcEEEEchhhH
Q 023800 239 AKSKKLVNMLKKQK---ESNRPYGAICASPA 266 (277)
Q Consensus 239 ~~~~~~~~~l~~~~---~~~~~i~aiC~G~~ 266 (277)
...+.+..|+.+.. -++|.++.++++.+
T Consensus 64 ~~~~~~~~~~~~l~~~~~~~K~v~~f~t~g~ 94 (141)
T PRK05569 64 IEQEEMAPFLDQFKLTPNENKKCILFGSYGW 94 (141)
T ss_pred CChHHHHHHHHHhhccCcCCCEEEEEeCCCC
Confidence 11234556665543 36888888887654
No 271
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=60.88 E-value=15 Score=26.97 Aligned_cols=36 Identities=11% Similarity=0.189 Sum_probs=27.6
Q ss_pred eEEEEecC-CCchhhHHHHHHHHHhCCCeEEEEeeCC
Q 023800 162 QILVPIAN-GSEEMEAVIIIDILRRAKANVVVASVAD 197 (277)
Q Consensus 162 kV~ill~~-g~~~~e~~~~~~~l~~a~~~v~~vs~~~ 197 (277)
|+.+...+ ......+......|+++|+++.++...-
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~ 38 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANV 38 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCC
Confidence 44455544 3568889999999999999999996654
No 272
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=60.87 E-value=11 Score=34.45 Aligned_cols=39 Identities=10% Similarity=0.145 Sum_probs=26.5
Q ss_pred CCCeEEEEecCC-----CchhhHHHHHHHHHhCCCeEEEEeeCC
Q 023800 159 NSPQILVPIANG-----SEEMEAVIIIDILRRAKANVVVASVAD 197 (277)
Q Consensus 159 ~~~kV~ill~~g-----~~~~e~~~~~~~l~~a~~~v~~vs~~~ 197 (277)
+++||.+++-|- +...=.-...-+|..+|++|+++-.+.
T Consensus 59 ~~Kkv~V~~Np~ank~~~r~~f~kna~P~lHLaG~~V~Ivktd~ 102 (535)
T KOG4435|consen 59 RPKKVFVLVNPEANKRGCRDQFNKNALPLLHLAGVQVDIVKTDN 102 (535)
T ss_pred ccceEEEEechhhccchhhhhhhcccchheeeccceEEEEecCc
Confidence 458999988762 222223455566778899999997664
No 273
>PRK06703 flavodoxin; Provisional
Probab=60.73 E-value=30 Score=26.77 Aligned_cols=89 Identities=21% Similarity=0.215 Sum_probs=46.5
Q ss_pred CeEEEEecCCCchhh--HHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh
Q 023800 161 PQILVPIANGSEEME--AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF 238 (277)
Q Consensus 161 ~kV~ill~~g~~~~e--~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~ 238 (277)
+|+.|+.+...--++ .-.+.+.++..|+++++...+.. ...++ .++|.|++..........
T Consensus 2 mkv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~---------------~~~~l--~~~d~viigspt~~~g~~ 64 (151)
T PRK06703 2 AKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGM---------------DAEEL--LAYDGIILGSYTWGDGDL 64 (151)
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhC---------------CHHHH--hcCCcEEEEECCCCCCcC
Confidence 577777765443333 23455677888888887755321 11122 467888885311100111
Q ss_pred h-cCHHHHHHHHHHHHcCCcEEEEchhhH
Q 023800 239 A-KSKKLVNMLKKQKESNRPYGAICASPA 266 (277)
Q Consensus 239 ~-~~~~~~~~l~~~~~~~~~i~aiC~G~~ 266 (277)
+ .-..+.+++++..-+++.++.+++|.+
T Consensus 65 p~~~~~f~~~l~~~~l~~k~~~vfg~g~~ 93 (151)
T PRK06703 65 PYEAEDFHEDLENIDLSGKKVAVFGSGDT 93 (151)
T ss_pred cHHHHHHHHHHhcCCCCCCEEEEEccCCC
Confidence 1 122344444433345788888877643
No 274
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=60.57 E-value=67 Score=23.81 Aligned_cols=62 Identities=23% Similarity=0.101 Sum_probs=33.3
Q ss_pred eEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcC
Q 023800 162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPG 230 (277)
Q Consensus 162 kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpG 230 (277)
+|+++=...-...=-...+..|.+.|+++..+.++.+ .+. |... -.++.+. +...|+++|.-
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~-~i~---G~~~--y~sl~e~-p~~iDlavv~~ 63 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGG-EIL---GIKC--YPSLAEI-PEPIDLAVVCV 63 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCS-EET---TEE---BSSGGGC-SST-SEEEE-S
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCce-EEC---cEEe--eccccCC-CCCCCEEEEEc
Confidence 5666654321111123466777779999999998876 443 3333 3445553 46788888764
No 275
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=60.23 E-value=23 Score=27.60 Aligned_cols=91 Identities=18% Similarity=0.201 Sum_probs=53.3
Q ss_pred CCeEEEEecCCCc-hhh--HHHHHHHHHhCCC---eEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcC---
Q 023800 160 SPQILVPIANGSE-EME--AVIIIDILRRAKA---NVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPG--- 230 (277)
Q Consensus 160 ~~kV~ill~~g~~-~~e--~~~~~~~l~~a~~---~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpG--- 230 (277)
..||+|+...-.. ..+ +.+..+.|...|. +++++...|. .-+++.....+.. .+||+++.-|
T Consensus 3 ~~ri~IV~s~~n~~i~~~ll~~a~~~l~~~g~~~~~i~~~~VPGa------~ElP~a~~~l~~~---~~~Davi~lG~VI 73 (144)
T PF00885_consen 3 GLRIAIVVSRFNEEITDRLLEGALEELKRHGVAEENIEVIRVPGA------FELPLAAKRLAES---GRYDAVIALGCVI 73 (144)
T ss_dssp TEEEEEEEESTTHHHHHHHHHHHHHHHHHTTTTGGCEEEEEESSG------GGHHHHHHHHHHC---STESEEEEEEEEE
T ss_pred CCEEEEEEEeccHHHHHHHHHHHHHHHHHcCCCccceEEEEcCCH------HHHHHHHHHHhcc---cCccEEEEecccc
Confidence 3689999865322 122 4568888999987 7888865543 3344444444432 4699998877
Q ss_pred -CcchHHhhhcCHHHHHHHHHHHHcCCcEE
Q 023800 231 -GLGGAQAFAKSKKLVNMLKKQKESNRPYG 259 (277)
Q Consensus 231 -G~~~~~~~~~~~~~~~~l~~~~~~~~~i~ 259 (277)
|......+-.+.-...+++-..+.++||+
T Consensus 74 ~G~T~H~~~v~~~v~~gl~~lsl~~~~PV~ 103 (144)
T PF00885_consen 74 RGETDHFEYVANAVSRGLMDLSLEYGIPVI 103 (144)
T ss_dssp --SSTHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred CCCchHHHHHHHHHHHHHHHHhccCCccEE
Confidence 33222333334444444454577788765
No 276
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=60.00 E-value=3.3 Score=32.49 Aligned_cols=79 Identities=10% Similarity=-0.003 Sum_probs=46.5
Q ss_pred HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC---CCccch-hccccChHHHHHHHHHHhCCCEEEEEc
Q 023800 6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA---CGMPGA-TNLKESEVLESIVKKQASDGRLYAAIC 81 (277)
Q Consensus 6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~---gG~~~~-~~~~~~~~~~~~l~~~~~~g~~i~aiC 81 (277)
..+.|++.|++++.+.... .... .....+.+.+.. ||.... ....++..+.+.|++..++|+++++..
T Consensus 5 ~~~~f~~~g~~v~~l~~~~-~~~~-------~~~~~i~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~S 76 (154)
T PF03575_consen 5 FRKAFRKLGFEVDQLDLSD-RNDA-------DILEAIREADAIFLGGGDTFRLLRQLKETGLDEAIREAYRKGGVIIGTS 76 (154)
T ss_dssp HHHHHHHCT-EEEECCCTS-CGHH-------HHHHHHHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTTSEEEEET
T ss_pred HHHHHHHCCCEEEEEeccC-CChH-------HHHHHHHhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCEEEEEC
Confidence 4578888898887777654 1100 111122222221 664211 112345668899999999999999999
Q ss_pred hhHHHHHHHcCC
Q 023800 82 VFLAVALGSWGL 93 (277)
Q Consensus 82 ~g~~~~La~aGl 93 (277)
.|+. ++...+.
T Consensus 77 AGA~-i~~~~~~ 87 (154)
T PF03575_consen 77 AGAM-ILGPSIE 87 (154)
T ss_dssp HHHH-CTSSBSC
T ss_pred hHHh-hccCcee
Confidence 9998 7544433
No 277
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=59.73 E-value=7.7 Score=29.01 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=20.3
Q ss_pred HHHHHHHHhCCCEEEEEchhHH
Q 023800 64 ESIVKKQASDGRLYAAICVFLA 85 (277)
Q Consensus 64 ~~~l~~~~~~g~~i~aiC~g~~ 85 (277)
.+.|+++.++|+++.+||.|+.
T Consensus 67 ~~~i~~~v~~g~p~LGIClGAy 88 (114)
T cd03144 67 NRRIRNFVRNGGNYLGICAGAY 88 (114)
T ss_pred cHHHHHHHHCCCcEEEEecCcc
Confidence 7788888899999999999998
No 278
>PRK12361 hypothetical protein; Provisional
Probab=59.15 E-value=1.7e+02 Score=28.08 Aligned_cols=25 Identities=8% Similarity=0.133 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHhCCCEEEEEchhHH
Q 023800 61 EVLESIVKKQASDGRLYAAICVFLA 85 (277)
Q Consensus 61 ~~~~~~l~~~~~~g~~i~aiC~g~~ 85 (277)
++..+||.+..++|+.|.--|.+..
T Consensus 162 ~~a~~~i~~~~~~~~~VlVHC~~G~ 186 (547)
T PRK12361 162 NQAINWIHRQVRANKSVVVHCALGR 186 (547)
T ss_pred HHHHHHHHHHHHCCCeEEEECCCCC
Confidence 5678899998889999999998654
No 279
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=59.06 E-value=6.9 Score=32.74 Aligned_cols=29 Identities=24% Similarity=0.259 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHhCCCEEEEEchhHHHHHHH
Q 023800 61 EVLESIVKKQASDGRLYAAICVFLAVALGS 90 (277)
Q Consensus 61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~ 90 (277)
.....-|+...++|+++.+||.|.. +|..
T Consensus 74 ~~k~~~l~~~i~~g~p~laiCgg~Q-lLG~ 102 (250)
T COG3442 74 LTKKEGLKDAIENGKPVLAICGGYQ-LLGQ 102 (250)
T ss_pred ccccHHHHHHHhcCCcEEEEccchh-hccc
Confidence 4456678999999999999999999 7855
No 280
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=58.95 E-value=32 Score=29.89 Aligned_cols=28 Identities=11% Similarity=0.165 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhCC--CEEEEEchhHHHHHHH
Q 023800 62 VLESIVKKQASDG--RLYAAICVFLAVALGS 90 (277)
Q Consensus 62 ~~~~~l~~~~~~g--~~i~aiC~g~~~~La~ 90 (277)
.+.++..+..++| .+|.++|-|.. +|+.
T Consensus 78 ~l~~~a~~~~~~g~~~Pv~GiClG~Q-lL~~ 107 (273)
T cd01747 78 IIYNLALERNDAGDYFPVWGTCLGFE-LLTY 107 (273)
T ss_pred HHHHHHHHhhhcCCCCcEEEEcHHHH-HHHH
Confidence 3334444444445 79999999998 7776
No 281
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=58.82 E-value=80 Score=27.78 Aligned_cols=92 Identities=18% Similarity=0.144 Sum_probs=52.2
Q ss_pred CCeEEEEecCCC-chhh-HHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh
Q 023800 160 SPQILVPIANGS-EEME-AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA 237 (277)
Q Consensus 160 ~~kV~ill~~g~-~~~e-~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~ 237 (277)
+++|+|+.-++- ...+ +....+.|+..|+++.+...... .. ........ ...+. ...+|.+++.||.+
T Consensus 4 ~~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~-~~-~~~~~~~~---~~~~~-~~~~d~vi~~GGDG---- 73 (295)
T PRK01231 4 FRNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAE-VL-PGHGLQTV---SRKLL-GEVCDLVIVVGGDG---- 73 (295)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hc-Cccccccc---chhhc-ccCCCEEEEEeCcH----
Confidence 467999977665 3333 33556678888988877543221 11 00011110 11112 13589999999964
Q ss_pred hhcCHHHHHHHHHHHHcCCcEEEEchhhH
Q 023800 238 FAKSKKLVNMLKKQKESNRPYGAICASPA 266 (277)
Q Consensus 238 ~~~~~~~~~~l~~~~~~~~~i~aiC~G~~ 266 (277)
-++...+.+...+.+|.+|-.|..
T Consensus 74 -----t~l~~~~~~~~~~~Pvlgin~G~l 97 (295)
T PRK01231 74 -----SLLGAARALARHNVPVLGINRGRL 97 (295)
T ss_pred -----HHHHHHHHhcCCCCCEEEEeCCcc
Confidence 223344555567888988888764
No 282
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=58.20 E-value=1.1e+02 Score=26.96 Aligned_cols=91 Identities=16% Similarity=0.128 Sum_probs=52.3
Q ss_pred CCeEEEEecCCC-chhhH-HHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh
Q 023800 160 SPQILVPIANGS-EEMEA-VIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA 237 (277)
Q Consensus 160 ~~kV~ill~~g~-~~~e~-~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~ 237 (277)
+++|+|+.-++- ...++ ....++|...|+++.+-..... .. +........+.+. ..+.|.+++.||.+
T Consensus 5 ~~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~-~~----~~~~~~~~~~~~~-~~~~d~vi~lGGDG---- 74 (292)
T PRK03378 5 FKCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAH-EL----QLKNVKTGTLAEI-GQQADLAIVVGGDG---- 74 (292)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hc----Ccccccccchhhc-CCCCCEEEEECCcH----
Confidence 467999876654 33333 3466678888988866432211 11 1000001111222 13579999999964
Q ss_pred hhcCHHHHHHHHHHHHcCCcEEEEchhh
Q 023800 238 FAKSKKLVNMLKKQKESNRPYGAICASP 265 (277)
Q Consensus 238 ~~~~~~~~~~l~~~~~~~~~i~aiC~G~ 265 (277)
-+++..+.+...+.+|.+|-.|.
T Consensus 75 -----T~L~aa~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 75 -----NMLGAARVLARYDIKVIGINRGN 97 (292)
T ss_pred -----HHHHHHHHhcCCCCeEEEEECCC
Confidence 23455555556678999998887
No 283
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=57.93 E-value=96 Score=27.26 Aligned_cols=95 Identities=17% Similarity=0.057 Sum_probs=52.8
Q ss_pred CeEEEEecCCCc-hhhH-HHHHHHHHhCCCeEEEEeeCCCceEEcccCc--EEEeCcchhhhccCCccEEEEcCCcchHH
Q 023800 161 PQILVPIANGSE-EMEA-VIIIDILRRAKANVVVASVADKLEILASCQV--KLVADMLIDEAAKLSYDLIVLPGGLGGAQ 236 (277)
Q Consensus 161 ~kV~ill~~g~~-~~e~-~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~--~i~~~~~~~~~~~~~~D~livpGG~~~~~ 236 (277)
|+|+|+.-++-. ..++ ....++|+..|.++.+-..... ........ .........+.. ..+|.+++-||.+
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~dlvi~lGGDG--- 75 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLD-FLKQDLKFHPSYDTFSDNEELD-GSADMVISIGGDG--- 75 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hhccccccccccccccchhhcc-cCCCEEEEECCcH---
Confidence 468888766542 3333 3456678888988877543221 11000000 000000112221 3579999999964
Q ss_pred hhhcCHHHHHHHHHHHHcCCcEEEEchhhH
Q 023800 237 AFAKSKKLVNMLKKQKESNRPYGAICASPA 266 (277)
Q Consensus 237 ~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~ 266 (277)
-++...+.+...+.||.+|-.|..
T Consensus 76 ------T~L~aa~~~~~~~~PilGIN~G~l 99 (292)
T PRK01911 76 ------TFLRTATYVGNSNIPILGINTGRL 99 (292)
T ss_pred ------HHHHHHHHhcCCCCCEEEEecCCC
Confidence 334566666667889999988873
No 284
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=57.87 E-value=91 Score=26.74 Aligned_cols=80 Identities=14% Similarity=0.164 Sum_probs=51.5
Q ss_pred CCeEEEEecCCCc---------hhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcC
Q 023800 160 SPQILVPIANGSE---------EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPG 230 (277)
Q Consensus 160 ~~kV~ill~~g~~---------~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpG 230 (277)
.++|+++..+|-. ...+....+.|+.. |+|..+.... .++ ++++|+|+|+|
T Consensus 146 ~~~V~~l~ghge~~~~~~~~~~~~~~~~l~~~L~~~-y~V~~~~l~~------------------~~I-P~~~d~Lvi~~ 205 (271)
T PF09822_consen 146 KPKVYFLTGHGERGGGSMPNSQSTSYSSLKSLLEKN-YDVEELNLAN------------------EEI-PDDADVLVIAG 205 (271)
T ss_pred CceEEEEccccccccccccccCcchHHHHHHHHHhc-CceeecCCcc------------------ccc-CCCCCEEEEEC
Confidence 4678888766544 46778888888888 8887775542 223 35789999998
Q ss_pred CcchHHhhhcCHHHHHHHHHHHHcC-CcEEEEchh
Q 023800 231 GLGGAQAFAKSKKLVNMLKKQKESN-RPYGAICAS 264 (277)
Q Consensus 231 G~~~~~~~~~~~~~~~~l~~~~~~~-~~i~aiC~G 264 (277)
... .-.+.-...|.++..+| +.+..+-..
T Consensus 206 P~~-----~ls~~e~~~l~~yl~~GG~ll~~~d~~ 235 (271)
T PF09822_consen 206 PKT-----DLSEEELYALDQYLMNGGKLLILLDPF 235 (271)
T ss_pred CCC-----CCCHHHHHHHHHHHHcCCeEEEEECCc
Confidence 532 13445556677766665 444444443
No 285
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=57.65 E-value=25 Score=33.72 Aligned_cols=20 Identities=15% Similarity=0.012 Sum_probs=17.4
Q ss_pred HhCCCEEEEEchhHHHHHHHc
Q 023800 71 ASDGRLYAAICVFLAVALGSW 91 (277)
Q Consensus 71 ~~~g~~i~aiC~g~~~~La~a 91 (277)
...+++|.+||-|.. +|+.+
T Consensus 74 ~~~~iPILGIClG~Q-lLa~a 93 (531)
T PRK09522 74 LRGKLPIIGICLGHQ-AIVEA 93 (531)
T ss_pred HhcCCCEEEEcHHHH-HHHHh
Confidence 456899999999999 88886
No 286
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=57.41 E-value=36 Score=27.88 Aligned_cols=31 Identities=6% Similarity=0.170 Sum_probs=25.4
Q ss_pred cChHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800 59 ESEVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (277)
Q Consensus 59 ~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (277)
+.....+.|+++ ....+|.+||-|=. .++.+
T Consensus 60 d~G~~~~~i~~~-~~~~PiLGVCLGHQ-ai~~~ 90 (191)
T COG0512 60 DAGISLELIRRF-AGRIPILGVCLGHQ-AIAEA 90 (191)
T ss_pred HcchHHHHHHHh-cCCCCEEEECccHH-HHHHH
Confidence 345578888888 66789999999999 88875
No 287
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.90 E-value=1.2e+02 Score=26.67 Aligned_cols=94 Identities=17% Similarity=0.177 Sum_probs=53.3
Q ss_pred CCCeEEEEecCCC-chhh-HHHHHHHHHhCCCeEEEEeeCCC-ceEEc--ccCcEEEeCcchhhhccCCccEEEEcCCcc
Q 023800 159 NSPQILVPIANGS-EEME-AVIIIDILRRAKANVVVASVADK-LEILA--SCQVKLVADMLIDEAAKLSYDLIVLPGGLG 233 (277)
Q Consensus 159 ~~~kV~ill~~g~-~~~e-~~~~~~~l~~a~~~v~~vs~~~~-~~v~~--~~g~~i~~~~~~~~~~~~~~D~livpGG~~ 233 (277)
+++||+|+.-++- ...+ +....++|...|+++.+-..... ..... ..+... ....+.. ...|.+++-||.+
T Consensus 4 ~~~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~D~vi~lGGDG 79 (296)
T PRK04539 4 PFHNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHI---VNKTELG-QYCDLVAVLGGDG 79 (296)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccc---cchhhcC-cCCCEEEEECCcH
Confidence 3467999977654 3333 34456678888988876432110 00100 011111 0112221 2579999999964
Q ss_pred hHHhhhcCHHHHHHHHHHHHcCCcEEEEchhh
Q 023800 234 GAQAFAKSKKLVNMLKKQKESNRPYGAICASP 265 (277)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~ 265 (277)
-++...+.+...+.||.+|-.|.
T Consensus 80 ---------T~L~aa~~~~~~~~PilGIN~G~ 102 (296)
T PRK04539 80 ---------TFLSVAREIAPRAVPIIGINQGH 102 (296)
T ss_pred ---------HHHHHHHHhcccCCCEEEEecCC
Confidence 23455555666788999998887
No 288
>PRK13054 lipid kinase; Reviewed
Probab=56.71 E-value=91 Score=27.27 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=22.2
Q ss_pred CCeEEEEecCCCc-hhhHHHHHHHHHhCCCeEEEEee
Q 023800 160 SPQILVPIANGSE-EMEAVIIIDILRRAKANVVVASV 195 (277)
Q Consensus 160 ~~kV~ill~~g~~-~~e~~~~~~~l~~a~~~v~~vs~ 195 (277)
++|+.+++-+... .-.+......|+++++++++...
T Consensus 3 ~~~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t 39 (300)
T PRK13054 3 FPKSLLILNGKSAGNEELREAVGLLREEGHTLHVRVT 39 (300)
T ss_pred CceEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEe
Confidence 4677766654432 23345566778888988776543
No 289
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.09 E-value=1e+02 Score=26.99 Aligned_cols=90 Identities=18% Similarity=0.156 Sum_probs=54.4
Q ss_pred CCCeEEEEecCCCchhhHH-HHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh
Q 023800 159 NSPQILVPIANGSEEMEAV-IIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA 237 (277)
Q Consensus 159 ~~~kV~ill~~g~~~~e~~-~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~ 237 (277)
++++|+|+.-++-...++. ...++|...|.++.+-..... .. ...+. ...+.. .++|.+++-||.+
T Consensus 9 ~~~~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~-~~-~~~~~------~~~~~~-~~~Dlvi~iGGDG---- 75 (287)
T PRK14077 9 NIKKIGLVTRPNVSLDKEILKLQKILSIYKVEILLEKESAE-IL-DLPGY------GLDELF-KISDFLISLGGDG---- 75 (287)
T ss_pred cCCEEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecchhh-hh-ccccc------chhhcc-cCCCEEEEECCCH----
Confidence 3567999987664444443 345567778888766532221 11 11111 112221 3579999999964
Q ss_pred hhcCHHHHHHHHHHHHcCCcEEEEchhhH
Q 023800 238 FAKSKKLVNMLKKQKESNRPYGAICASPA 266 (277)
Q Consensus 238 ~~~~~~~~~~l~~~~~~~~~i~aiC~G~~ 266 (277)
-+++..+.+...++||.+|-.|..
T Consensus 76 -----T~L~aa~~~~~~~~PilGIN~G~l 99 (287)
T PRK14077 76 -----TLISLCRKAAEYDKFVLGIHAGHL 99 (287)
T ss_pred -----HHHHHHHHhcCCCCcEEEEeCCCc
Confidence 334566666677899999988873
No 290
>PRK06756 flavodoxin; Provisional
Probab=55.84 E-value=65 Score=24.72 Aligned_cols=87 Identities=14% Similarity=0.135 Sum_probs=49.9
Q ss_pred CeEEEEecCCCchhh--HHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh
Q 023800 161 PQILVPIANGSEEME--AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF 238 (277)
Q Consensus 161 ~kV~ill~~g~~~~e--~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~ 238 (277)
+||.|+-+...--++ .-.+.+.++..|.++++...... + ...++ .++|.|++..... ..-
T Consensus 2 mkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~-~-------------~~~~~--~~~d~vi~gspt~--~~g 63 (148)
T PRK06756 2 SKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDS-P-------------EASIL--EQYDGIILGAYTW--GDG 63 (148)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhcc-C-------------CHHHH--hcCCeEEEEeCCC--CCC
Confidence 578888766443333 23455778888888877755321 1 11222 4689988864211 001
Q ss_pred hcCHHHHHHHHHHH---HcCCcEEEEchhh
Q 023800 239 AKSKKLVNMLKKQK---ESNRPYGAICASP 265 (277)
Q Consensus 239 ~~~~~~~~~l~~~~---~~~~~i~aiC~G~ 265 (277)
..++.+..|+.+.. -++++++.+++|.
T Consensus 64 ~~p~~~~~fl~~l~~~~l~~k~~~~fgt~~ 93 (148)
T PRK06756 64 DLPDDFLDFYDAMDSIDLTGKKAAVFGSCD 93 (148)
T ss_pred CCcHHHHHHHHHHhcCCCCCCEEEEEeCCC
Confidence 12334677776543 3688998887743
No 291
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=55.69 E-value=13 Score=33.74 Aligned_cols=30 Identities=17% Similarity=0.040 Sum_probs=24.8
Q ss_pred ChHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800 60 SEVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (277)
Q Consensus 60 ~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (277)
.....++++++.++ +++.+||-|.. +|+.+
T Consensus 224 ~~~~~~~i~~~~~~-~PvlGIClG~Q-lLa~a 253 (354)
T PRK12838 224 LQPYLPEIKKLISS-YPILGICLGHQ-LIALA 253 (354)
T ss_pred hHHHHHHHHHHhcC-CCEEEECHHHH-HHHHH
Confidence 34567788888877 99999999999 88865
No 292
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.45 E-value=1.3e+02 Score=26.67 Aligned_cols=95 Identities=17% Similarity=0.170 Sum_probs=54.2
Q ss_pred CCeEEEEecCCCc-hhhH-HHHHHHHHhCCCeEEEEeeCCCceEEcccCc--EE---EeC-cchhhhccCCccEEEEcCC
Q 023800 160 SPQILVPIANGSE-EMEA-VIIIDILRRAKANVVVASVADKLEILASCQV--KL---VAD-MLIDEAAKLSYDLIVLPGG 231 (277)
Q Consensus 160 ~~kV~ill~~g~~-~~e~-~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~--~i---~~~-~~~~~~~~~~~D~livpGG 231 (277)
|++|+|+.-++-. ..++ ....+.|...|+++.+-..... .. ..... .+ ..+ ....+.. .+.|++++.||
T Consensus 1 m~~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~Dlvi~iGG 77 (305)
T PRK02649 1 MPKAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGG-IL-GYANPDQPVCHTGIDQLVPPGFD-SSMKFAIVLGG 77 (305)
T ss_pred CCEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hc-CccccccccccccccccChhhcc-cCcCEEEEEeC
Confidence 3578998766542 3333 4566678889998877543221 11 00000 00 000 0112221 35799999999
Q ss_pred cchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhH
Q 023800 232 LGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPA 266 (277)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~ 266 (277)
.+ -++...+.+...+++|.+|-.|..
T Consensus 78 DG---------TlL~aar~~~~~~iPilGIN~G~l 103 (305)
T PRK02649 78 DG---------TVLSAARQLAPCGIPLLTINTGHL 103 (305)
T ss_pred cH---------HHHHHHHHhcCCCCcEEEEeCCCC
Confidence 64 344566666677889999988865
No 293
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=54.72 E-value=35 Score=23.98 Aligned_cols=62 Identities=19% Similarity=0.123 Sum_probs=36.9
Q ss_pred HHHHHHHHhCCCEEEEEchhHHHHHHHcCCCCCCC----------CCCeE---cCCCCCCHHHHHHHHHHHhcCh
Q 023800 64 ESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK----------DGKVV---TTRGPGTPMEFVVALVEQLYGK 125 (277)
Q Consensus 64 ~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~----------dg~~i---T~~g~~~~~~~a~~li~~l~g~ 125 (277)
.+++++.+++...+..||+-..++=.-+.+|++|. +|+.+ .++--+.+.+++.++-+.+.+.
T Consensus 2 ~~~~~~~~~~~d~~I~i~A~GivvR~iap~l~dK~~DPaVvvvde~g~~vIplL~GH~GGan~lA~~iA~~lga~ 76 (84)
T PF11760_consen 2 KDLLRELFRRYDAIIFIMAAGIVVRAIAPLLKDKDTDPAVVVVDEDGRFVIPLLGGHRGGANELARQIAELLGAQ 76 (84)
T ss_dssp ---HHHHCCC-SEEEEES-HHHHHHHHHHH---TTT--EEEEE-TT--EEEEEE-TTTT-HHHHHHHHHHHTT-E
T ss_pred hhHHHHHHcCCCeEEEEeCcHHHHHHhChhhcccCCCCCEEEEeCCCCEEEEeccCCcchHHHHHHHHHHHhCCE
Confidence 56889999998988888876654667788999988 56533 4444555788888888877654
No 294
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=54.42 E-value=44 Score=25.72 Aligned_cols=59 Identities=17% Similarity=0.241 Sum_probs=37.0
Q ss_pred CCeEEEEecCC-CchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcC
Q 023800 160 SPQILVPIANG-SEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPG 230 (277)
Q Consensus 160 ~~kV~ill~~g-~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpG 230 (277)
.++|.+...+| ..+.........|+.+||++...+.+-. ++.-...+...+.|+|.+..
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp------------~e~i~~~a~~~~~d~V~lS~ 62 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTS------------QEEFIDAAIETDADAILVSS 62 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCC------------HHHHHHHHHHcCCCEEEEcC
Confidence 35665555443 5667777888899999999998876532 22223333334566666654
No 295
>PRK06934 flavodoxin; Provisional
Probab=53.95 E-value=10 Score=31.91 Aligned_cols=42 Identities=10% Similarity=0.114 Sum_probs=32.1
Q ss_pred cCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchh
Q 023800 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICAS 264 (277)
Q Consensus 220 ~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G 264 (277)
.++||.|+|. .+ .+.-...+.+..||.+..-.||.|+-+|+-
T Consensus 127 l~~YD~I~IG--~P-IWwg~~P~~V~tFLe~~d~~GK~I~pF~T~ 168 (221)
T PRK06934 127 LADYDQIFIG--YP-IWWYKMPMVMYSFFEQHDFSGKTLIPFTTH 168 (221)
T ss_pred HHhCCEEEEE--cc-hhhccccHHHHHHHHhcCCCCCEEEEEEec
Confidence 4679999994 33 333456778999999887789999999973
No 296
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=53.50 E-value=35 Score=26.95 Aligned_cols=93 Identities=19% Similarity=0.220 Sum_probs=52.7
Q ss_pred CCCeEEEEecCCCch---hhHHHHHHHHHhCC---CeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcC--
Q 023800 159 NSPQILVPIANGSEE---MEAVIIIDILRRAK---ANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPG-- 230 (277)
Q Consensus 159 ~~~kV~ill~~g~~~---~e~~~~~~~l~~a~---~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpG-- 230 (277)
...||+|+...=... .=+.+..+.|...| .+++++..-|. .-+++....... ..+||+++.-|
T Consensus 11 ~~~riaIV~s~~n~~i~~~l~~ga~~~l~~~gv~~~~i~v~~VPGa------~EiP~a~~~l~~---~~~~DavIalG~V 81 (154)
T PRK00061 11 KGLRIGIVVARFNDFITDALLEGALDALKRHGVSEENIDVVRVPGA------FEIPLAAKKLAE---SGKYDAVIALGAV 81 (154)
T ss_pred CCCEEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCCH------HHHHHHHHHHHH---cCCCCEEEEEeeE
Confidence 346999998753222 34678889999988 56777765443 223333333222 24699998876
Q ss_pred --CcchHHhhhcCHHHHHHHHHHHHcCCcEEE
Q 023800 231 --GLGGAQAFAKSKKLVNMLKKQKESNRPYGA 260 (277)
Q Consensus 231 --G~~~~~~~~~~~~~~~~l~~~~~~~~~i~a 260 (277)
|.......-.+.-...+.+-..+.++||+.
T Consensus 82 IrG~T~H~e~V~~~v~~gl~~v~l~~~~PV~~ 113 (154)
T PRK00061 82 IRGETPHFDYVANEVAKGLADVSLETGVPVGF 113 (154)
T ss_pred EcCCCchHHHHHHHHHHHHHHHHhccCCCEEE
Confidence 322222222233333344445677888753
No 297
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=52.76 E-value=87 Score=24.26 Aligned_cols=65 Identities=17% Similarity=0.193 Sum_probs=45.0
Q ss_pred cCCCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEee--CCCceEEcccCcEEEeCcchhhhccCCccEEEE
Q 023800 157 FDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASV--ADKLEILASCQVKLVADMLIDEAAKLSYDLIVL 228 (277)
Q Consensus 157 ~~~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~--~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~liv 228 (277)
+.+.++|+++-...--.-.-......|.+.||++.-|.| .++ .+.+ ... -.++.+++ ...|+|-|
T Consensus 13 L~~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~-eiLG---~k~--y~sL~dIp-e~IDiVdv 79 (140)
T COG1832 13 LKSAKTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGE-EILG---EKV--YPSLADIP-EPIDIVDV 79 (140)
T ss_pred HHhCceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCcccchH-HhcC---chh--hhcHHhCC-CCCcEEEE
Confidence 345689999988766666667788899999999999988 443 3332 222 24566664 56787766
No 298
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=52.59 E-value=2.1e+02 Score=29.73 Aligned_cols=72 Identities=14% Similarity=0.126 Sum_probs=46.7
Q ss_pred CCCeEEEEecCCCc-------hhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcE-------EEeCcchhhhccCCcc
Q 023800 159 NSPQILVPIANGSE-------EMEAVIIIDILRRAKANVVVASVADKLEILASCQVK-------LVADMLIDEAAKLSYD 224 (277)
Q Consensus 159 ~~~kV~ill~~g~~-------~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~-------i~~~~~~~~~~~~~~D 224 (277)
+.+||.|+-.-|.+ +..-+-.+.++++.|....++.|+-. .++++.|+. +.++..-.-+..+.+|
T Consensus 376 ~~~kVlvlGSGGLsIGQAGEFDYSGsQAiKAlkEe~i~TiLiNPNIA-tvQts~~lAD~vyflpvT~~~vt~vi~~erPd 454 (1435)
T KOG0370|consen 376 EVKKVLVLGSGGLSIGQAGEFDYSGSQAIKALKEENIFTILINPNIA-TVQTSKGLADKVYFLPVTPEYVTKVIKAERPD 454 (1435)
T ss_pred cccEEEEEccCCccccccceeeeeHHHHHHhhhhcccEEEEECCccc-ccccccccceEEEEeecCHHHHHHHHHhhCCC
Confidence 45788888766544 23335678889999998889988876 788888753 2222211112235678
Q ss_pred EEEEcCC
Q 023800 225 LIVLPGG 231 (277)
Q Consensus 225 ~livpGG 231 (277)
.+++.-|
T Consensus 455 ~il~tfg 461 (1435)
T KOG0370|consen 455 GILLTFG 461 (1435)
T ss_pred eEEEecC
Confidence 8888643
No 299
>PF01799 Fer2_2: [2Fe-2S] binding domain; InterPro: IPR002888 The [2Fe-2S] binding domain is found in a range of enzymes including dehydrogenases, oxidases and oxidoreductases. The aldehyde oxido-reductase (Mop) from the sulphate reducing anaerobic Gram-negative bacterium Desulfovibrio gigas is a homodimer of 907 amino acid residues subunits and is a member of the xanthine oxidase family. The protein contains a molybdopterin cofactor (Mo-co) and two different [2Fe-2S] centres. It is folded into four domains of which the first two bind the iron sulphur centres and the last two are involved in Mo-co binding. Mo-co is a molybdenum molybdopterin cytosine dinucleotide. Molybdopterin forms a tricyclic system with the pterin bicycle annealed to a pyran ring. The molybdopterin dinucleotide is deeply buried in the protein. The cis-dithiolene group of the pyran ring binds the molybdenum, which is coordinated by three more (oxygen) ligands [].; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 2E3T_A 1WYG_A 3AN1_B 2E1Q_C 2CKJ_A 3B9J_I 3NVY_J 1FO4_B 3NRZ_J 3AM9_A ....
Probab=51.35 E-value=3.7 Score=28.23 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=39.0
Q ss_pred cccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHcCCCCCCC-----------CCCeEcCCCCCC
Q 023800 57 LKESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKGLK-----------DGKVVTTRGPGT 110 (277)
Q Consensus 57 ~~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g~~-----------dg~~iT~~g~~~ 110 (277)
+..++.+..+.+.|.+.+..-++.|+-.+ +++...||+... +||+--|.|...
T Consensus 5 l~~~~~~~~iq~af~~~~a~QCGfCtpG~-im~~~~ll~~~~~p~~~ei~~al~gnlCRCTgY~~ 68 (75)
T PF01799_consen 5 LASDGELHPIQQAFVEHGAVQCGFCTPGM-IMAAYALLRRNPDPTEEEIREALSGNLCRCTGYRP 68 (75)
T ss_dssp SSBTTB--HHHHHHHHTT--SSSSSHHHH-HHHHHHHHHHSSS-CHHHHHHHTTTS--SSSTSHH
T ss_pred CCCCCCcCHHHHHHHHhCCCcCCcchHHH-HHHHHHHhhcccchhhHHHHHHHHcCccCCCCcHH
Confidence 45577888888999999999999999999 999999998654 888887777654
No 300
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=50.74 E-value=19 Score=30.53 Aligned_cols=33 Identities=12% Similarity=0.050 Sum_probs=27.2
Q ss_pred cChHHHHHHHHHHhCCCEEEEEchhHHHHHHHcC
Q 023800 59 ESEVLESIVKKQASDGRLYAAICVFLAVALGSWG 92 (277)
Q Consensus 59 ~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aG 92 (277)
+...+.+.|++..++|+++++.|.|+. +++...
T Consensus 98 ~~~gl~~~l~~~~~~G~~~~G~SAGAi-i~~~~i 130 (233)
T PRK05282 98 YERGLLAPIREAVKNGTPYIGWSAGAN-VAGPTI 130 (233)
T ss_pred HHCCcHHHHHHHHHCCCEEEEECHHHH-hhhccc
Confidence 345677889999999999999999998 766644
No 301
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=49.49 E-value=20 Score=32.77 Aligned_cols=30 Identities=20% Similarity=-0.032 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800 61 EVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (277)
Q Consensus 61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (277)
....+.++++.+.+.+|.+||-|-. +|+.+
T Consensus 250 ~~~i~~i~~~~~~~~PilGIClGhQ-lLa~a 279 (382)
T CHL00197 250 HYGIKTVKKLLKYNIPIFGICMGHQ-ILSLA 279 (382)
T ss_pred HHHHHHHHHHHhCCCCEEEEcHHHH-HHHHH
Confidence 4566777877777899999999999 78775
No 302
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=49.44 E-value=75 Score=23.31 Aligned_cols=68 Identities=22% Similarity=0.273 Sum_probs=39.1
Q ss_pred CCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHH
Q 023800 170 GSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLK 249 (277)
Q Consensus 170 g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~ 249 (277)
......+......|+..||++...+..- .+....+.+...++|+|.+..-. ......-+++.+.+|
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~------------~~~~l~~~~~~~~pdvV~iS~~~--~~~~~~~~~~i~~l~ 75 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDV------------PPEEIVEAAKEEDADAIGLSGLL--TTHMTLMKEVIEELK 75 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCC------------CHHHHHHHHHHcCCCEEEEeccc--cccHHHHHHHHHHHH
Confidence 3566777888899999999996665331 12222333334567888887642 122222344445555
Q ss_pred HH
Q 023800 250 KQ 251 (277)
Q Consensus 250 ~~ 251 (277)
+.
T Consensus 76 ~~ 77 (119)
T cd02067 76 EA 77 (119)
T ss_pred Hc
Confidence 44
No 303
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=49.26 E-value=31 Score=27.42 Aligned_cols=93 Identities=15% Similarity=0.112 Sum_probs=51.1
Q ss_pred CCCeEEEEecCC---CchhhHHHHHHHHHhCCC---eEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcC--
Q 023800 159 NSPQILVPIANG---SEEMEAVIIIDILRRAKA---NVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPG-- 230 (277)
Q Consensus 159 ~~~kV~ill~~g---~~~~e~~~~~~~l~~a~~---~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpG-- 230 (277)
...||+|+...= ..+.=+.+..+.|.+.|. ++.++..-|. .-+++....... ..+||++|.-|
T Consensus 9 ~~~riaIV~srfn~~It~~Ll~gA~~~l~~~G~~~~~i~v~~VPGA------~EiP~~a~~l~~---~~~yDaiIaLG~V 79 (158)
T PRK12419 9 TPQRIAFIQARWHADIVDQARKGFVAEIAARGGAASQVDIFDVPGA------FEIPLHAQTLAK---TGRYAAIVAAALV 79 (158)
T ss_pred CCCEEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcH------HHHHHHHHHHHh---cCCCCEEEEEEEE
Confidence 346999998652 223336788899999884 4666654442 333333332222 24699998876
Q ss_pred --CcchHHhhhcCHHHHHHHHHHHHcCCcEEE
Q 023800 231 --GLGGAQAFAKSKKLVNMLKKQKESNRPYGA 260 (277)
Q Consensus 231 --G~~~~~~~~~~~~~~~~l~~~~~~~~~i~a 260 (277)
|...-...-.+.-.....+-..+.++||+.
T Consensus 80 IrGeT~H~e~V~~~v~~gl~~vsl~~~~PV~f 111 (158)
T PRK12419 80 VDGGIYRHEFVAQAVIDGLMRVQLDTEVPVFS 111 (158)
T ss_pred EcCCCchhHHHHHHHHHHHHHHHhccCCCEEE
Confidence 432221222233333344445567777653
No 304
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=48.79 E-value=16 Score=29.90 Aligned_cols=69 Identities=10% Similarity=0.194 Sum_probs=40.9
Q ss_pred HHHHHHhCCCeEEEEeeCCCceeecCCCCEEecCccccccccC-----CCccchhccccChHHHHHHHHHHhCCCEEEEE
Q 023800 6 TIDVLRRSGADVVVASVEKQLRVDACHGVKIVADALVSNCRDA-----CGMPGATNLKESEVLESIVKKQASDGRLYAAI 80 (277)
Q Consensus 6 ~~~~l~~~~~~v~~~s~~~~~~v~~~~g~~v~~d~~~~~~~~~-----gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~ai 80 (277)
..+.|++.|+++.++..+. .... .+++.+.+ ||...+.. .......++.+ +.++++.+|
T Consensus 15 l~~~l~~~g~~v~v~~~~~-~~~~-----------~~~~~~~d~iIlsgGP~~p~~---~~~~~~~i~~~-~~~~PvLGI 78 (195)
T PRK07649 15 LVQFLGELGQELVVKRNDE-VTIS-----------DIENMKPDFLMISPGPCSPNE---AGISMEVIRYF-AGKIPIFGV 78 (195)
T ss_pred HHHHHHHCCCcEEEEeCCC-CCHH-----------HHhhCCCCEEEECCCCCChHh---CCCchHHHHHh-cCCCCEEEE
Confidence 4567888889888888552 1110 01111111 66322322 22345566643 578999999
Q ss_pred chhHHHHHHHc
Q 023800 81 CVFLAVALGSW 91 (277)
Q Consensus 81 C~g~~~~La~a 91 (277)
|-|.. +|+.+
T Consensus 79 ClG~Q-lla~~ 88 (195)
T PRK07649 79 CLGHQ-SIAQV 88 (195)
T ss_pred cHHHH-HHHHH
Confidence 99999 89885
No 305
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=48.08 E-value=77 Score=30.33 Aligned_cols=93 Identities=16% Similarity=0.180 Sum_probs=50.1
Q ss_pred CeEEEEecCCCchhhHHHHHHHHHhCC-Ce-EEEEeeCCCceEEcccCcEEEeCcchhhhc-cCCccEEEEcCCcchHHh
Q 023800 161 PQILVPIANGSEEMEAVIIIDILRRAK-AN-VVVASVADKLEILASCQVKLVADMLIDEAA-KLSYDLIVLPGGLGGAQA 237 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~~~~~~~l~~a~-~~-v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~-~~~~D~livpGG~~~~~~ 237 (277)
.++-+++.|.++...+. .++.+..++ .. |.++..+. +.+| .+..+. ...||+|+|.-|.+.+
T Consensus 13 ~rl~~LlID~YDSyTfN-iy~ll~~~~~vp~V~~vh~~~-----------~~~d-~~~~l~q~~~FDaIVVgPGPG~P-- 77 (767)
T KOG1224|consen 13 PRLRTLLIDNYDSYTFN-IYQLLSTINGVPPVVIVHDEW-----------TWED-AYHYLYQDVAFDAIVVGPGPGSP-- 77 (767)
T ss_pred hheeEEEEecccchhhh-HHHHHHHhcCCCcEEEEeccc-----------cCHH-HHHHHhhccccceEEecCCCCCC--
Confidence 45777777877766653 455555543 32 22222111 1112 222221 1359999996554433
Q ss_pred hhcCHHHHHHHHHHHHc--CCcEEEEchhhHHhhhh
Q 023800 238 FAKSKKLVNMLKKQKES--NRPYGAICASPALVLEP 271 (277)
Q Consensus 238 ~~~~~~~~~~l~~~~~~--~~~i~aiC~G~~~lLa~ 271 (277)
.-++-+..+.+.... ..+|.+||-|-. .|+-
T Consensus 78 --~~a~d~gI~~rl~~~~~~iPilGICLGfQ-al~l 110 (767)
T KOG1224|consen 78 --MCAADIGICLRLLLECRDIPILGICLGFQ-ALGL 110 (767)
T ss_pred --CcHHHHHHHHHHHHhcCCCceeeeehhhH-hHhh
Confidence 123334444444443 589999999988 6753
No 306
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=47.54 E-value=1.4e+02 Score=25.78 Aligned_cols=37 Identities=14% Similarity=0.147 Sum_probs=24.0
Q ss_pred CeEEEEecC--CCc-hh-hHHHHHHHHHhCCCeEEEEeeCC
Q 023800 161 PQILVPIAN--GSE-EM-EAVIIIDILRRAKANVVVASVAD 197 (277)
Q Consensus 161 ~kV~ill~~--g~~-~~-e~~~~~~~l~~a~~~v~~vs~~~ 197 (277)
+|+.+++-| |.. .. .+......|...++++.+...+.
T Consensus 2 ~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~ 42 (293)
T TIGR00147 2 AEAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWE 42 (293)
T ss_pred ceEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecC
Confidence 578888777 432 12 23446677888898887776543
No 307
>PF01058 Oxidored_q6: NADH ubiquinone oxidoreductase, 20 Kd subunit; InterPro: IPR006137 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 20 kDa (in mammals) [], which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 4Fe-4S iron-sulphur cluster. The 20 kDa subunit has been found to be nuclear encoded, as a precursor form with a transit peptide in mammals, and in Neurospora crassa. It is and chloroplast encoded in various higher plants (gene ndhK or psbG).; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0048038 quinone binding, 0051539 4 iron, 4 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 3MYR_E 3RGW_S 2FUG_F 3IAS_6 3I9V_F 3IAM_F 2YBB_6 3M9S_F 2FRV_G 1YQ9_B ....
Probab=44.52 E-value=25 Score=26.80 Aligned_cols=41 Identities=12% Similarity=0.251 Sum_probs=32.6
Q ss_pred CCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhH
Q 023800 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPA 266 (277)
Q Consensus 221 ~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~ 266 (277)
.+.|+++|-|... ..+.+..++++++.++.+.|.|+++=+.
T Consensus 44 ~~~diliVeG~v~-----~~~~~~~e~~~~~~~~a~~vIAvGtCA~ 84 (131)
T PF01058_consen 44 EEADILIVEGSVP-----RNMEEALEWLKELRPKAKAVIAVGTCAS 84 (131)
T ss_dssp TTTEEEEEESBEE-----TGGEEHHHHHHHHHGCSSEEEEEHHHHH
T ss_pred cCceEEEEEeecc-----CCchHHHHHHHHHccCCceeEcCCCccc
Confidence 4789999999752 1346788999999999999999976443
No 308
>PRK13055 putative lipid kinase; Reviewed
Probab=44.46 E-value=1.6e+02 Score=26.24 Aligned_cols=36 Identities=17% Similarity=0.088 Sum_probs=22.6
Q ss_pred CCeEEEEecCCC---c-hhhHHHHHHHHHhCCCeEEEEee
Q 023800 160 SPQILVPIANGS---E-EMEAVIIIDILRRAKANVVVASV 195 (277)
Q Consensus 160 ~~kV~ill~~g~---~-~~e~~~~~~~l~~a~~~v~~vs~ 195 (277)
++|+.|++-|.- . .-.+......|+.+|+++.+.-.
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t 41 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQT 41 (334)
T ss_pred CceEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEe
Confidence 467888776631 1 22344567788888988776543
No 309
>PLN02727 NAD kinase
Probab=43.90 E-value=1.5e+02 Score=30.62 Aligned_cols=97 Identities=15% Similarity=0.120 Sum_probs=54.5
Q ss_pred CCCeEEEEecCCCchhhH-HHHHHHHHhC-CCeEEEEeeCCCceEEcccCc---EEEeCcchhhhccCCccEEEEcCCcc
Q 023800 159 NSPQILVPIANGSEEMEA-VIIIDILRRA-KANVVVASVADKLEILASCQV---KLVADMLIDEAAKLSYDLIVLPGGLG 233 (277)
Q Consensus 159 ~~~kV~ill~~g~~~~e~-~~~~~~l~~a-~~~v~~vs~~~~~~v~~~~g~---~i~~~~~~~~~~~~~~D~livpGG~~ 233 (277)
++++|+|+--++-...+. ....++|... |+++.+-....+ ......+. .........+.. ...|++|+-||.+
T Consensus 677 p~rtVgIV~K~~~ea~~~~~eL~~~L~~~~gi~V~VE~~~a~-~l~~~~~~~~~~~~~~~~~~el~-~~~DLVIvLGGDG 754 (986)
T PLN02727 677 TPKTVLLLKKLGQELMEEAKEVASFLYHQEKMNVLVEPDVHD-IFARIPGFGFVQTFYSQDTSDLH-ERVDFVACLGGDG 754 (986)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHHHHhCCCeEEEEecchHH-Hhhccccccccceecccchhhcc-cCCCEEEEECCcH
Confidence 468999998776544432 3456777776 777644322111 11011111 010011122222 3589999999964
Q ss_pred hHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhH
Q 023800 234 GAQAFAKSKKLVNMLKKQKESNRPYGAICASPA 266 (277)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~ 266 (277)
-++...+.+...+.+|.+|-.|..
T Consensus 755 ---------TlLrAar~~~~~~iPILGINlGrL 778 (986)
T PLN02727 755 ---------VILHASNLFRGAVPPVVSFNLGSL 778 (986)
T ss_pred ---------HHHHHHHHhcCCCCCEEEEeCCCc
Confidence 334566666677889999988865
No 310
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=43.65 E-value=32 Score=26.44 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=27.7
Q ss_pred cCCccEEEEcCCcchHHhhhcCHHHHHHHHHHH--HcCCcEEEEchhh
Q 023800 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQK--ESNRPYGAICASP 265 (277)
Q Consensus 220 ~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~--~~~~~i~aiC~G~ 265 (277)
..+||.||+.++.. .-.-.+.+.+|+++.. -++++++.+++|.
T Consensus 41 ~~~yD~vi~gspiy---~g~~~~~~~~fi~~~~~~l~~k~v~~f~~~~ 85 (143)
T PF12724_consen 41 LSDYDAVIFGSPIY---AGRIPGEMREFIKKNKDNLKNKKVALFSVGG 85 (143)
T ss_pred cccCCEEEEEEEEE---CCcCCHHHHHHHHHHHHHHcCCcEEEEEEeC
Confidence 46799999976532 1234567888888643 3567776666553
No 311
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=43.61 E-value=34 Score=26.24 Aligned_cols=82 Identities=17% Similarity=0.178 Sum_probs=46.0
Q ss_pred HHHHHHhCCCeEEEEeeCCC--------ceEEcccCc-EEEeCcchhh--hccCCccEEEEcCCcchHHhhhcCHHHHHH
Q 023800 179 IIDILRRAKANVVVASVADK--------LEILASCQV-KLVADMLIDE--AAKLSYDLIVLPGGLGGAQAFAKSKKLVNM 247 (277)
Q Consensus 179 ~~~~l~~a~~~v~~vs~~~~--------~~v~~~~g~-~i~~~~~~~~--~~~~~~D~livpGG~~~~~~~~~~~~~~~~ 247 (277)
....|.++|++|.+++.... ..++...|- .+.+...... .....+|.|||+-=. ...++.++.
T Consensus 13 ~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa------~~~~~~l~~ 86 (151)
T PF02558_consen 13 YAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA------YQLEQALQS 86 (151)
T ss_dssp HHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG------GGHHHHHHH
T ss_pred HHHHHHHCCCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc------cchHHHHHH
Confidence 34556679999999987651 012222211 1222222211 123679999998521 123456677
Q ss_pred HHHHHHcCCcEEEEchhhH
Q 023800 248 LKKQKESNRPYGAICASPA 266 (277)
Q Consensus 248 l~~~~~~~~~i~aiC~G~~ 266 (277)
|+.....+..|..+.+|.-
T Consensus 87 l~~~~~~~t~iv~~qNG~g 105 (151)
T PF02558_consen 87 LKPYLDPNTTIVSLQNGMG 105 (151)
T ss_dssp HCTGEETTEEEEEESSSSS
T ss_pred HhhccCCCcEEEEEeCCCC
Confidence 7777777778888877743
No 312
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=43.60 E-value=66 Score=25.42 Aligned_cols=37 Identities=24% Similarity=0.223 Sum_probs=31.4
Q ss_pred CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeC
Q 023800 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVA 196 (277)
Q Consensus 160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~ 196 (277)
.+|+.|++.||...-++..+...++.+|.++-.++..
T Consensus 106 ~~kv~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~~ 142 (165)
T cd01481 106 VPQFLVLITGGKSQDDVERPAVALKRAGIVPFAIGAR 142 (165)
T ss_pred CCeEEEEEeCCCCcchHHHHHHHHHHCCcEEEEEeCC
Confidence 3689999999998888889999999999887777653
No 313
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=43.05 E-value=30 Score=30.48 Aligned_cols=104 Identities=15% Similarity=0.146 Sum_probs=50.3
Q ss_pred CCCeEEEEe-cCCCchhhHHHHHHHHHhCC--CeEEEEeeCCCceEEcccCcEE-EeCcchhhhccCCccEEEEcCCcch
Q 023800 159 NSPQILVPI-ANGSEEMEAVIIIDILRRAK--ANVVVASVADKLEILASCQVKL-VADMLIDEAAKLSYDLIVLPGGLGG 234 (277)
Q Consensus 159 ~~~kV~ill-~~g~~~~e~~~~~~~l~~a~--~~v~~vs~~~~~~v~~~~g~~i-~~~~~~~~~~~~~~D~livpGG~~~ 234 (277)
++.||+||- .|.-..+|. -++..|+... .+++++-+..- .-+....-.+ .--.+++++....||++||.|..
T Consensus 33 rpL~I~IlNLMP~K~~TE~-Q~lrlL~~tplqv~v~f~~~~sh-~~k~t~~~~l~~~Y~~~~~i~~~~~DglIITGAP-- 108 (298)
T PF04204_consen 33 RPLKIGILNLMPDKEETER-QFLRLLSNTPLQVEVTFLYPASH-KSKNTSPEHLEKFYKTFDEIKDRKFDGLIITGAP-- 108 (298)
T ss_dssp --EEEEEE---SSHHHHHH-HHHHHCCSSSS-EEEEEE--S------SS-HHHHHHHEE-HHHCTTS-EEEEEE---T--
T ss_pred cceEEEEEecccchHHHHH-HHHHHhcCCCCceEEEEEEeccc-cCCCCCHHHHHHhhhCHHHHhhCCCCEEEEeCCC--
Confidence 456899885 354445553 3344444443 45666654432 1111110001 11145777766789999999963
Q ss_pred HHhh-----hcCHHHHHHHHHHHHcCCcEEEEchhhH
Q 023800 235 AQAF-----AKSKKLVNMLKKQKESNRPYGAICASPA 266 (277)
Q Consensus 235 ~~~~-----~~~~~~~~~l~~~~~~~~~i~aiC~G~~ 266 (277)
...+ ..-+++.+.+...-++.....-+|=|+.
T Consensus 109 vE~l~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAq 145 (298)
T PF04204_consen 109 VEQLPFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQ 145 (298)
T ss_dssp TTTS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHH
T ss_pred cCCCCcccCCcHHHHHHHHHHHHHcCCcchhhhHHHH
Confidence 2222 2225666666666666777899999988
No 314
>PRK13337 putative lipid kinase; Reviewed
Probab=42.95 E-value=1.7e+02 Score=25.62 Aligned_cols=36 Identities=8% Similarity=0.033 Sum_probs=21.4
Q ss_pred CeEEEEecCC--Cc--hhhHHHHHHHHHhCCCeEEEEeeC
Q 023800 161 PQILVPIANG--SE--EMEAVIIIDILRRAKANVVVASVA 196 (277)
Q Consensus 161 ~kV~ill~~g--~~--~~e~~~~~~~l~~a~~~v~~vs~~ 196 (277)
+|+.+++-|. .. .-.+......|+.+++++++...+
T Consensus 2 ~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~~~~~~~~t~ 41 (304)
T PRK13337 2 KRARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHATT 41 (304)
T ss_pred ceEEEEECCcccchhHHHHHHHHHHHHHHcCCEEEEEEec
Confidence 5677776653 21 122334566788888887766544
No 315
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=42.85 E-value=56 Score=25.74 Aligned_cols=93 Identities=19% Similarity=0.227 Sum_probs=53.4
Q ss_pred CCCeEEEEecC--C-CchhhHHHHHHHHHhCCCeE---EEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcC--
Q 023800 159 NSPQILVPIAN--G-SEEMEAVIIIDILRRAKANV---VVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPG-- 230 (277)
Q Consensus 159 ~~~kV~ill~~--g-~~~~e~~~~~~~l~~a~~~v---~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpG-- 230 (277)
++.|++|+..- . ..+.=+.+..+.+.+.|.+. .++..-|. .-+++.... +.. ..+||+|+-.|
T Consensus 11 ~~~riaIV~arfn~~I~d~ll~gA~~~l~~~G~~~~~i~vv~VPGa------~EiPl~a~~-La~--~~~yDAvv~lG~V 81 (152)
T COG0054 11 KGLRIAIVVARFNDDITDALLEGAVDALKRHGADVDNIDVVRVPGA------FEIPLAAKK-LAR--TGKYDAVVALGAV 81 (152)
T ss_pred CCceEEEEEeehhHHHHHHHHHHHHHHHHHcCCCcccceEEEeCCc------chhHHHHHH-HHh--cCCcceEEEEeeE
Confidence 45699999853 2 22333578889999988644 45544432 333322222 222 24699998776
Q ss_pred --CcchHHhhhcCHHHHHHHHHHHHcCCcEEE
Q 023800 231 --GLGGAQAFAKSKKLVNMLKKQKESNRPYGA 260 (277)
Q Consensus 231 --G~~~~~~~~~~~~~~~~l~~~~~~~~~i~a 260 (277)
|...-..+-.++......+-..+.++||..
T Consensus 82 IrG~T~Hfd~Va~~~~~gl~~vsl~~~~PV~~ 113 (152)
T COG0054 82 IRGETYHFDYVANEVARGLMDVSLETGVPVTF 113 (152)
T ss_pred EeCCCccHHHHHHHHHHHHHHHHHhhCCCeEe
Confidence 332233344455555555666778888764
No 316
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=42.38 E-value=68 Score=27.64 Aligned_cols=75 Identities=16% Similarity=0.283 Sum_probs=46.7
Q ss_pred CchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh-------------
Q 023800 171 SEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA------------- 237 (277)
Q Consensus 171 ~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~------------- 237 (277)
..+.-.....+.|...|+++..+..=++.+ -.|. ..+.... +.+|+||+.||.++.++
T Consensus 18 ivdtNa~~la~~L~~~G~~v~~~~~VgD~~------~~I~--~~l~~a~-~r~D~vI~tGGLGPT~DDiT~e~vAka~g~ 88 (255)
T COG1058 18 IVDTNAAFLADELTELGVDLARITTVGDNP------DRIV--EALREAS-ERADVVITTGGLGPTHDDLTAEAVAKALGR 88 (255)
T ss_pred eecchHHHHHHHHHhcCceEEEEEecCCCH------HHHH--HHHHHHH-hCCCEEEECCCcCCCccHhHHHHHHHHhCC
Confidence 445666778899999998877766544410 0010 1122222 45999999998764222
Q ss_pred -hhcCHHHHHHHHHHHHc
Q 023800 238 -FAKSKKLVNMLKKQKES 254 (277)
Q Consensus 238 -~~~~~~~~~~l~~~~~~ 254 (277)
+..+++.+++|++++.+
T Consensus 89 ~lv~~~~al~~i~~~~~~ 106 (255)
T COG1058 89 PLVLDEEALAMIEEKYAK 106 (255)
T ss_pred CcccCHHHHHHHHHHHHh
Confidence 23468889999987764
No 317
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=42.38 E-value=1.7e+02 Score=27.79 Aligned_cols=65 Identities=17% Similarity=0.247 Sum_probs=37.0
Q ss_pred CCCeEEEEecC--C-CchhhH-H-HHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcc
Q 023800 159 NSPQILVPIAN--G-SEEMEA-V-IIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLG 233 (277)
Q Consensus 159 ~~~kV~ill~~--g-~~~~e~-~-~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~ 233 (277)
+++|+.|++-| | -..... . .....|+.++++++++-.... |-. .....++....||.|++.||.+
T Consensus 110 ~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~~~-------ghA---~~la~~~~~~~~D~VV~vGGDG 179 (481)
T PLN02958 110 RPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETKYQ-------LHA---KEVVRTMDLSKYDGIVCVSGDG 179 (481)
T ss_pred CCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEeccCc-------cHH---HHHHHHhhhcCCCEEEEEcCCC
Confidence 45788888766 2 122232 2 244588999998877644331 000 0111122235699999999975
No 318
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=41.74 E-value=22 Score=33.54 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800 61 EVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (277)
Q Consensus 61 ~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (277)
..+.+.++++ |++|.+||.|-. +|++.
T Consensus 55 ~~l~~~i~~~---g~pvlGICgG~Q-mLg~~ 81 (476)
T PRK06278 55 DELKKEILNF---DGYIIGICSGFQ-ILSEK 81 (476)
T ss_pred HHHHHHHHHc---CCeEEEEcHHHH-hcccc
Confidence 3455666555 999999999999 89987
No 319
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=41.36 E-value=28 Score=29.06 Aligned_cols=28 Identities=14% Similarity=0.268 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhCCCEEEEEchhHHHHHHH
Q 023800 62 VLESIVKKQASDGRLYAAICVFLAVALGS 90 (277)
Q Consensus 62 ~~~~~l~~~~~~g~~i~aiC~g~~~~La~ 90 (277)
--+++++...+++++|.+||-|.. +|..
T Consensus 94 ~e~~l~~~a~~~~~PilGICrG~Q-~lnv 121 (217)
T PF07722_consen 94 FELALIRNALGRGKPILGICRGMQ-LLNV 121 (217)
T ss_dssp HHHHHHHHHCCTT--EEEETHHHH-HHHH
T ss_pred HHHHHHHHHHhcCCCEEEEcHHHH-HHHH
Confidence 346678888899999999999999 6654
No 320
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=40.89 E-value=2e+02 Score=25.06 Aligned_cols=87 Identities=18% Similarity=0.146 Sum_probs=49.5
Q ss_pred eEEEEecCCCch-hh-HHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhh
Q 023800 162 QILVPIANGSEE-ME-AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA 239 (277)
Q Consensus 162 kV~ill~~g~~~-~e-~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~ 239 (277)
+++|+.-+.... .+ .......+...++++.+...... ..... ....+.+.+.+|++++-||.+
T Consensus 2 ~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~l~~~--------~~~~~~~~~~~d~ivvlGGDG------ 66 (281)
T COG0061 2 KVGIVGRPDKPEALKIAKRLYEFLKFKGVTVEVDQELAE-ELKDF--------ADYVDDDEEKADLIVVLGGDG------ 66 (281)
T ss_pred eEEEEecCCcHHHHHHHHHHHHHHHhcCceEEEechhhh-hcccc--------cccccccccCceEEEEeCCcH------
Confidence 566666555432 22 23344445555666655543332 11111 122222235689999988853
Q ss_pred cCHHHHHHHHHHHHcCCcEEEEchhhH
Q 023800 240 KSKKLVNMLKKQKESNRPYGAICASPA 266 (277)
Q Consensus 240 ~~~~~~~~l~~~~~~~~~i~aiC~G~~ 266 (277)
-++...+.+.+.+.+|.+|-.|..
T Consensus 67 ---tlL~~~~~~~~~~~pilgin~G~l 90 (281)
T COG0061 67 ---TLLRAARLLARLDIPVLGINLGHL 90 (281)
T ss_pred ---HHHHHHHHhccCCCCEEEEeCCCc
Confidence 345677777788889999988854
No 321
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=40.76 E-value=1.4e+02 Score=21.83 Aligned_cols=78 Identities=17% Similarity=0.172 Sum_probs=47.5
Q ss_pred cCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHH
Q 023800 168 ANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNM 247 (277)
Q Consensus 168 ~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~ 247 (277)
.-|.+..-.......|.+.|..+...... . .+ . ...... ..-|.+|+.+-. ...+++.++
T Consensus 7 G~G~S~~~a~~~~~~l~~~g~~~~~~~~~-~-~~--------~--~~~~~~--~~~d~vi~iS~s------G~t~~~~~~ 66 (128)
T cd05014 7 GVGKSGHIARKIAATLSSTGTPAFFLHPT-E-AL--------H--GDLGMV--TPGDVVIAISNS------GETDELLNL 66 (128)
T ss_pred eCcHhHHHHHHHHHHhhcCCCceEEcccc-h-hh--------c--cccCcC--CCCCEEEEEeCC------CCCHHHHHH
Confidence 34444444445556666667777665321 1 10 0 011222 234788887642 257789999
Q ss_pred HHHHHHcCCcEEEEchhh
Q 023800 248 LKKQKESNRPYGAICASP 265 (277)
Q Consensus 248 l~~~~~~~~~i~aiC~G~ 265 (277)
++.+.++|.++.+|+...
T Consensus 67 ~~~a~~~g~~vi~iT~~~ 84 (128)
T cd05014 67 LPHLKRRGAPIIAITGNP 84 (128)
T ss_pred HHHHHHCCCeEEEEeCCC
Confidence 999999999999998853
No 322
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=40.69 E-value=60 Score=29.61 Aligned_cols=30 Identities=17% Similarity=0.157 Sum_probs=24.5
Q ss_pred ChHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800 60 SEVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (277)
Q Consensus 60 ~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (277)
+..-.+.||+|.++|.--.+||.|++ +|..
T Consensus 68 ~~~g~~~Ir~fV~~GG~YlGiCAGaY--~as~ 97 (367)
T PF09825_consen 68 NGEGNRRIRQFVENGGGYLGICAGAY--YASS 97 (367)
T ss_pred ChHHHHHHHHHHHcCCcEEEECcchh--hhcc
Confidence 45557789999999999999999998 5554
No 323
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=40.61 E-value=72 Score=26.04 Aligned_cols=101 Identities=17% Similarity=0.142 Sum_probs=53.6
Q ss_pred CeEEEEecCCCchhh--HHHHHHHHHh-CCCeEEEEeeCCCce--EEcccCcEEE---eCcchhhhccCCccEEEEcCCc
Q 023800 161 PQILVPIANGSEEME--AVIIIDILRR-AKANVVVASVADKLE--ILASCQVKLV---ADMLIDEAAKLSYDLIVLPGGL 232 (277)
Q Consensus 161 ~kV~ill~~g~~~~e--~~~~~~~l~~-a~~~v~~vs~~~~~~--v~~~~g~~i~---~~~~~~~~~~~~~D~livpGG~ 232 (277)
+||+|+-+...--++ .-...+.+.. .|.+++++......+ +....+.... +...++++ ..+|.|++....
T Consensus 2 ~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~aD~ii~gsPt 79 (200)
T PRK03767 2 AKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDEL--ADYDAIIFGTPT 79 (200)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHH--HhCCEEEEEecc
Confidence 578888876443222 3446666776 888998887642201 1000110000 11124443 478998886532
Q ss_pred chHHhhhcCHHHHHHHHHHH-------HcCCcEEEEchhhH
Q 023800 233 GGAQAFAKSKKLVNMLKKQK-------ESNRPYGAICASPA 266 (277)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~~-------~~~~~i~aiC~G~~ 266 (277)
..-...+.+..|+.+.. -.+|+.+.++++.+
T Consensus 80 ---y~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~ 117 (200)
T PRK03767 80 ---RFGNMAGQMRNFLDQTGGLWAKGALVGKVGSVFTSTGT 117 (200)
T ss_pred ---cCCCchHHHHHHHHHhccccccCCccCCEEEEEEeCCC
Confidence 11223456666666543 13788888887644
No 324
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=40.31 E-value=46 Score=25.87 Aligned_cols=91 Identities=18% Similarity=0.126 Sum_probs=49.8
Q ss_pred CCeEEEEecCCC---chhhHHHHHHHHHhCCCe---EEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcC---
Q 023800 160 SPQILVPIANGS---EEMEAVIIIDILRRAKAN---VVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPG--- 230 (277)
Q Consensus 160 ~~kV~ill~~g~---~~~e~~~~~~~l~~a~~~---v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpG--- 230 (277)
..||+|+...=. ...=+.+..+.|.+.|.+ ++++..-|. .-+++....... ..+||+++.-|
T Consensus 7 ~~ri~IV~s~fn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGa------~EiP~a~~~l~~---s~~~DavIaLG~VI 77 (141)
T PLN02404 7 GLRFGVVVARFNEIITKNLLEGALETFKRYSVKEENIDVVWVPGS------FEIPVVAQRLAK---SGKYDAILCIGAVI 77 (141)
T ss_pred CCEEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEEcCcH------HHHHHHHHHHHh---cCCCCEEEEEEEEE
Confidence 479999986522 223356788899999864 666655443 333333322222 24699998876
Q ss_pred -CcchHHhhhcCHHHHHHHHHHHHcCCcEE
Q 023800 231 -GLGGAQAFAKSKKLVNMLKKQKESNRPYG 259 (277)
Q Consensus 231 -G~~~~~~~~~~~~~~~~l~~~~~~~~~i~ 259 (277)
|...-...-.+.-.....+-..+.++||+
T Consensus 78 rGeT~H~e~V~~~v~~gl~~vsl~~~~PV~ 107 (141)
T PLN02404 78 RGDTTHYDAVANSAASGVLSAGLNSGVPCI 107 (141)
T ss_pred eCCCchhHHHHHHHHHHHHHHHhccCCCEE
Confidence 43222122223333333344566777765
No 325
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=40.17 E-value=1.8e+02 Score=23.31 Aligned_cols=86 Identities=10% Similarity=0.145 Sum_probs=44.8
Q ss_pred EEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHH
Q 023800 165 VPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKL 244 (277)
Q Consensus 165 ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~ 244 (277)
|++.|+++...........-+.++.+.+.-.+. + +.+++....++.+++.-|.+.+. +..--
T Consensus 21 iv~IDNYDSFT~Nv~qYL~~e~g~~~~VyRNDe-----------i----TV~El~~~NP~~LliSPGPG~P~---DsGIs 82 (223)
T KOG0026|consen 21 IIVIDNYDSFTYNLCQYLMGELGCHFEVYRNDE-----------L----TVEELKRKNPRGLLISPGPGTPQ---DSGIS 82 (223)
T ss_pred EEEEecccchhHHHHHHhhhccCccEEEEecCc-----------c----cHHHHhhcCCCeEEecCCCCCCc---cccch
Confidence 455576665554443333355677777665442 2 22333333456665543332222 22222
Q ss_pred HHHHHHHHHcCCcEEEEchhhHHhhh
Q 023800 245 VNMLKKQKESNRPYGAICASPALVLE 270 (277)
Q Consensus 245 ~~~l~~~~~~~~~i~aiC~G~~~lLa 270 (277)
.+-+++ +....++.++|.|-. -.-
T Consensus 83 ~~~i~~-f~~~iP~fGvCMGlQ-Ci~ 106 (223)
T KOG0026|consen 83 LQTVLE-LGPLVPLFGVCMGLQ-CIG 106 (223)
T ss_pred HHHHHH-hCCCCceeeeehhhh-hhh
Confidence 334443 445679999999987 543
No 326
>PRK06242 flavodoxin; Provisional
Probab=39.41 E-value=41 Score=25.78 Aligned_cols=43 Identities=23% Similarity=0.185 Sum_probs=28.9
Q ss_pred CCccEEEEcCCcchHHhhhcCHHHHHHHHHHHH-cCCcEEEEchhhH
Q 023800 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKE-SNRPYGAICASPA 266 (277)
Q Consensus 221 ~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~-~~~~i~aiC~G~~ 266 (277)
.++|.|++... .......+.+.+||.+... ++|+++.+|++.+
T Consensus 42 ~~~d~ii~g~p---vy~~~~~~~~~~fl~~~~~~~~k~~~~f~t~g~ 85 (150)
T PRK06242 42 SEYDLIGFGSG---IYFGKFHKSLLKLIEKLPPVSGKKAFIFSTSGL 85 (150)
T ss_pred hHCCEEEEeCc---hhcCCcCHHHHHHHHhhhhhcCCeEEEEECCCC
Confidence 46898888653 1222346678888877544 6888888887654
No 327
>PLN02204 diacylglycerol kinase
Probab=39.03 E-value=58 Score=31.70 Aligned_cols=68 Identities=22% Similarity=0.162 Sum_probs=38.2
Q ss_pred CCCeEEEEecCC----CchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcc
Q 023800 159 NSPQILVPIANG----SEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLG 233 (277)
Q Consensus 159 ~~~kV~ill~~g----~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~ 233 (277)
+++++.|++-|- -..-.+-.....|+++++++.++-.... |-....-..+.+.....||.|++.||.+
T Consensus 158 r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~~v~~T~~a-------ghA~d~~~~~~~~~l~~~D~VVaVGGDG 229 (601)
T PLN02204 158 RPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTERA-------GHAFDVMASISNKELKSYDGVIAVGGDG 229 (601)
T ss_pred CCceEEEEECCCCCCcchHHHHHHHHHHHHHcCCeEEEEEecCc-------chHHHHHHHHhhhhccCCCEEEEEcCcc
Confidence 357888887762 1112223567788999998776644332 1111101111222245799999999975
No 328
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=38.48 E-value=42 Score=30.33 Aligned_cols=31 Identities=13% Similarity=-0.002 Sum_probs=27.5
Q ss_pred ChHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800 60 SEVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (277)
Q Consensus 60 ~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (277)
-+..+..+|++....+++.+||-|=. +||-|
T Consensus 236 ~~~~i~~ik~l~~~~iPifGICLGHQ-llalA 266 (368)
T COG0505 236 LDYAIETIKELLGTKIPIFGICLGHQ-LLALA 266 (368)
T ss_pred HHHHHHHHHHHhccCCCeEEEcHHHH-HHHHh
Confidence 46788899999999999999999999 88876
No 329
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=37.95 E-value=56 Score=26.87 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=31.2
Q ss_pred CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCC
Q 023800 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADK 198 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~ 198 (277)
|||++--=||+...-+....+.|+..|++|.+|+|..+
T Consensus 1 M~ILlTNDDGi~a~Gi~aL~~~L~~~g~~V~VvAP~~~ 38 (196)
T PF01975_consen 1 MRILLTNDDGIDAPGIRALAKALSALGHDVVVVAPDSE 38 (196)
T ss_dssp SEEEEE-SS-TTSHHHHHHHHHHTTTSSEEEEEEESSS
T ss_pred CeEEEEcCCCCCCHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 46777666899999999999999888899999999865
No 330
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=37.80 E-value=1.1e+02 Score=27.03 Aligned_cols=126 Identities=16% Similarity=0.139 Sum_probs=65.3
Q ss_pred chhhcccC-ccccccCCCCeEEEEec---C-CCchhhHHHHHHHHHhCCC-eEEEEeeCCCc---eEEcccCcEEEeCcc
Q 023800 144 EFTIAEFN-PVQWTFDNSPQILVPIA---N-GSEEMEAVIIIDILRRAKA-NVVVASVADKL---EILASCQVKLVADML 214 (277)
Q Consensus 144 ~~~~~~~~-~~~~~~~~~~kV~ill~---~-g~~~~e~~~~~~~l~~a~~-~v~~vs~~~~~---~v~~~~g~~i~~~~~ 214 (277)
+|+..|.. +...++ ..+.|.|+-. | +-..+|+....++++++|. ++.++-|=-.. --....|-.+.....
T Consensus 31 ~FpdGE~~vri~~~v-~g~~V~ii~s~~~~~nd~l~eLll~~~alr~~ga~~i~lViPYl~YsRQDr~~~~ge~isak~~ 109 (309)
T PRK01259 31 RFSDGEISVEINENV-RGKDVFIIQSTCAPTNDNLMELLIMIDALKRASAGRITAVIPYFGYARQDRKARSRVPITAKLV 109 (309)
T ss_pred ECCCCCEEEEeCCCC-CCCEEEEECCCCCCCcHHHHHHHHHHHHHHHcCCceEEEEeeccccchhhhhhccCCCchHHHH
Confidence 34444443 232233 3467777754 2 3468899999999999986 46666552110 000111222221111
Q ss_pred hhhhccCCccEEEEcCCcc---------hHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800 215 IDEAAKLSYDLIVLPGGLG---------GAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (277)
Q Consensus 215 ~~~~~~~~~D~livpGG~~---------~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~ 271 (277)
-.-+....+|-|+..--+. +.+.+...+.+.+|+++..-+...|.++-.|++ .+|+
T Consensus 110 a~lL~~~g~d~vitvD~H~~~~~~~f~~p~~~l~~~~~l~~~i~~~~~~~~vvv~pd~Gg~-~~A~ 174 (309)
T PRK01259 110 ANLLETAGADRVLTMDLHADQIQGFFDIPVDNLYGSPILLEDIKQKNLENLVVVSPDVGGV-VRAR 174 (309)
T ss_pred HHHHhhcCCCEEEEEcCChHHHcCcCCCCceeeeecHHHHHHHHhcCCCCcEEEEECCCcH-HHHH
Confidence 0111112356665543221 112233446778888654224557999999999 7875
No 331
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=37.67 E-value=53 Score=25.42 Aligned_cols=91 Identities=19% Similarity=0.196 Sum_probs=49.1
Q ss_pred CeEEEEecCCC---chhhHHHHHHHHHhCCCe---EEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcC----
Q 023800 161 PQILVPIANGS---EEMEAVIIIDILRRAKAN---VVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPG---- 230 (277)
Q Consensus 161 ~kV~ill~~g~---~~~e~~~~~~~l~~a~~~---v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpG---- 230 (277)
.||+|+...=. ...=+.+..+.|.+.|.+ +.++..-| +.-+++....... ..+||+++.-|
T Consensus 1 ~ri~IV~s~~n~~i~~~L~~ga~~~l~~~g~~~~~i~v~~VPG------a~EiP~a~~~l~~---~~~~DavI~LG~VIr 71 (138)
T TIGR00114 1 VRVGIVIARFNRDITDMLLKGAIDALKRLGAEVDNIDVIWVPG------AFELPLAVKKLAE---TGKYDAVIALGCVIR 71 (138)
T ss_pred CEEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCc------HHHHHHHHHHHHh---cCCCCEEEEEeeEEe
Confidence 37888876522 223356788899998864 45654433 2333333333322 24699998876
Q ss_pred CcchHHhhhcCHHHHHHHHHHHHcCCcEEE
Q 023800 231 GLGGAQAFAKSKKLVNMLKKQKESNRPYGA 260 (277)
Q Consensus 231 G~~~~~~~~~~~~~~~~l~~~~~~~~~i~a 260 (277)
|...-...-.+.-.....+-..+.++||+.
T Consensus 72 G~T~H~e~v~~~v~~gl~~~sl~~~~PV~~ 101 (138)
T TIGR00114 72 GGTPHFEYVADEAAKGIADLALDYDKPVIF 101 (138)
T ss_pred CCCchhHHHHHHHHHHHHHHHhhhCCCEEE
Confidence 332222222233333344445667888753
No 332
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=37.51 E-value=1.6e+02 Score=24.48 Aligned_cols=59 Identities=19% Similarity=0.254 Sum_probs=40.0
Q ss_pred CeEEEEecCC-CchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCC
Q 023800 161 PQILVPIANG-SEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGG 231 (277)
Q Consensus 161 ~kV~ill~~g-~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG 231 (277)
.||.+...+| ..+.........|+.+||++...+.+-. ++.-.+.+...+.|+|.+..-
T Consensus 89 ~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp------------~e~~v~~~~~~~~~~V~lS~~ 148 (213)
T cd02069 89 GKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVP------------IEKILEAAKEHKADIIGLSGL 148 (213)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCC------------HHHHHHHHHHcCCCEEEEccc
Confidence 5777776664 6677788899999999999999876532 222233333356777777653
No 333
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=37.51 E-value=92 Score=21.67 Aligned_cols=20 Identities=20% Similarity=0.107 Sum_probs=15.1
Q ss_pred hHHHHHHHHHhCCCeEEEEe
Q 023800 175 EAVIIIDILRRAKANVVVAS 194 (277)
Q Consensus 175 e~~~~~~~l~~a~~~v~~vs 194 (277)
.+....+.|+..||+|.-..
T Consensus 9 ~Ls~v~~~L~~~GyeVv~l~ 28 (80)
T PF03698_consen 9 GLSNVKEALREKGYEVVDLE 28 (80)
T ss_pred CchHHHHHHHHCCCEEEecC
Confidence 34566799999999986654
No 334
>PLN02335 anthranilate synthase
Probab=37.32 E-value=36 Score=28.53 Aligned_cols=27 Identities=15% Similarity=0.082 Sum_probs=20.5
Q ss_pred HHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800 63 LESIVKKQASDGRLYAAICVFLAVALGSW 91 (277)
Q Consensus 63 ~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (277)
..+++++ ...+++|.+||-|.. +|+.+
T Consensus 81 ~~~~~~~-~~~~~PiLGIClG~Q-lLa~a 107 (222)
T PLN02335 81 SLQTVLE-LGPLVPLFGVCMGLQ-CIGEA 107 (222)
T ss_pred hHHHHHH-hCCCCCEEEecHHHH-HHHHH
Confidence 4555654 356799999999999 88874
No 335
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=37.26 E-value=40 Score=29.65 Aligned_cols=150 Identities=13% Similarity=0.096 Sum_probs=89.9
Q ss_pred EecCccccccccC--CCccchhccccC-hHHHHHHHHHHhCCCEEEEEchhHHHHHHHcCCCCC-----C---C-----C
Q 023800 36 IVADALVSNCRDA--CGMPGATNLKES-EVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKG-----L---K-----D 99 (277)
Q Consensus 36 v~~d~~~~~~~~~--gG~~~~~~~~~~-~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g-----~---~-----d 99 (277)
++++..++..... ||.......+.+ +++.++++.....+.++--+..|+. +|-.-+-.+| . . +
T Consensus 3 ~~~~~~L~~~ttfriGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSN-lLv~d~g~~gvvi~~~~~~~~~~~~~ 81 (291)
T COG0812 3 IKTNVPLKRYTTFRIGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSN-LLVRDGGIGGVVIKLGKLNFIEIEGD 81 (291)
T ss_pred cccCCccccceeEecCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCce-EEEecCCCceEEEEcccccceeeecc
Confidence 3444555555444 774222223444 8899999999989999999999999 6666551221 1 1 3
Q ss_pred CCeEcCCCCCCHHHHHHHHHHHh------------------------cChhHHHHHhhcccccccCCC-chhhccc--Cc
Q 023800 100 GKVVTTRGPGTPMEFVVALVEQL------------------------YGKGKADEVSGARVMRANHGD-EFTIAEF--NP 152 (277)
Q Consensus 100 g~~iT~~g~~~~~~~a~~li~~l------------------------~g~~~a~~v~~~~~~~~~~~~-~~~~~~~--~~ 152 (277)
+..|++.+...+.+++...+++= +|.++.+-+.+.-.+++...- .++.++. ..
T Consensus 82 ~~~i~a~aG~~~~~l~~~~~~~gl~GlE~l~gIPGsvGgav~mNaGAyG~Ei~d~~~~v~~ld~~G~~~~l~~~el~f~Y 161 (291)
T COG0812 82 DGLIEAGAGAPWHDLVRFALENGLSGLEFLAGIPGSVGGAVIMNAGAYGVEISDVLVSVEVLDRDGEVRWLSAEELGFGY 161 (291)
T ss_pred CCeEEEccCCcHHHHHHHHHHcCCcchhhhcCCCcccchhhhccCcccccchheeEEEEEEEcCCCCEEEEEHHHhCccc
Confidence 33999998888999999888762 344455555444445542211 1122211 12
Q ss_pred cccccCCC----CeEEEEecCCCchhhHHHHHHHHHhCC
Q 023800 153 VQWTFDNS----PQILVPIANGSEEMEAVIIIDILRRAK 187 (277)
Q Consensus 153 ~~~~~~~~----~kV~ill~~g~~~~e~~~~~~~l~~a~ 187 (277)
..+.|.+. .++.+=+.++ +..++..-++.+++..
T Consensus 162 R~S~f~~~~~vvl~v~f~L~~~-~~~~I~~~~~~ir~~R 199 (291)
T COG0812 162 RTSPFKKEYLVVLSVEFKLTKG-DPEDILAAMCAIRRRR 199 (291)
T ss_pred ccCcCCCCCEEEEEEEEEeCCC-CHHHHHHHHHHHHHhh
Confidence 22234332 3455666677 7778888888887664
No 336
>PLN02347 GMP synthetase
Probab=37.06 E-value=52 Score=31.65 Aligned_cols=25 Identities=12% Similarity=0.052 Sum_probs=19.8
Q ss_pred HHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800 66 IVKKQASDGRLYAAICVFLAVALGSW 91 (277)
Q Consensus 66 ~l~~~~~~g~~i~aiC~g~~~~La~a 91 (277)
+++...+.+++|.+||-|.. +|+.+
T Consensus 78 i~~~~~~~~iPILGIClG~Q-lLa~a 102 (536)
T PLN02347 78 FFDYCRERGVPVLGICYGMQ-LIVQK 102 (536)
T ss_pred HHHHHHhcCCcEEEECHHHH-HHHHH
Confidence 34444457899999999999 88886
No 337
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=36.98 E-value=2.2e+02 Score=27.17 Aligned_cols=97 Identities=18% Similarity=0.162 Sum_probs=52.4
Q ss_pred CCCeEEEEecCCC-chhhH-HHHHHHHH-hCCCeEEEEeeCCCceEEcc---cCcE-E-EeCcchhhhccCCccEEEEcC
Q 023800 159 NSPQILVPIANGS-EEMEA-VIIIDILR-RAKANVVVASVADKLEILAS---CQVK-L-VADMLIDEAAKLSYDLIVLPG 230 (277)
Q Consensus 159 ~~~kV~ill~~g~-~~~e~-~~~~~~l~-~a~~~v~~vs~~~~~~v~~~---~g~~-i-~~~~~~~~~~~~~~D~livpG 230 (277)
++++|+|+.-++- ...++ ....++|+ ..|+++.+-..... ..... .+.. . .+...+.+.. ..+|++|+.|
T Consensus 193 ~p~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~-~l~~~~~~~~~~~~~~~~~~~~~l~-~~~DlVIsiG 270 (508)
T PLN02935 193 DPQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKK-ELLSESSYFNFVQTWEDEKEILLLH-TKVDLVITLG 270 (508)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhh-hhccccccccccccccccchhhhcc-cCCCEEEEEC
Confidence 4689999987654 33333 34555676 46777766432211 11110 0100 0 0111111121 3589999999
Q ss_pred CcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhH
Q 023800 231 GLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPA 266 (277)
Q Consensus 231 G~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~ 266 (277)
|.+ -++...+.+.....||.+|-.|..
T Consensus 271 GDG---------TlL~Aar~~~~~~iPILGIN~G~L 297 (508)
T PLN02935 271 GDG---------TVLWAASMFKGPVPPVVPFSMGSL 297 (508)
T ss_pred CcH---------HHHHHHHHhccCCCcEEEEeCCCc
Confidence 964 234455556667789999988865
No 338
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=36.97 E-value=56 Score=29.33 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=27.2
Q ss_pred cChHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800 59 ESEVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (277)
Q Consensus 59 ~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (277)
...-+.+-|++...+||++.+||-|-. +|-+-
T Consensus 59 ~~~Gf~eplr~YiesgkPfmgicvGlQ-aLF~g 90 (541)
T KOG0623|consen 59 NRTGFAEPLRKYIESGKPFMGICVGLQ-ALFDG 90 (541)
T ss_pred hhhhhHHHHHHHHhcCCCeEeehhhHH-HHhcc
Confidence 456778889999999999999999999 67653
No 339
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=36.58 E-value=2.2e+02 Score=22.81 Aligned_cols=91 Identities=19% Similarity=0.109 Sum_probs=56.9
Q ss_pred EEEEecCCCc--hhhHHHHHHHHHhCCCeEEEEeeCCC-----ceEEcccCcEEEeC----cchhh---hccCCccEEEE
Q 023800 163 ILVPIANGSE--EMEAVIIIDILRRAKANVVVASVADK-----LEILASCQVKLVAD----MLIDE---AAKLSYDLIVL 228 (277)
Q Consensus 163 V~ill~~g~~--~~e~~~~~~~l~~a~~~v~~vs~~~~-----~~v~~~~g~~i~~~----~~~~~---~~~~~~D~liv 228 (277)
+-++..|-++ -.++..-...++.+|..+.++-+... ..|.|..|....+. ..+.+ ....++|+|+|
T Consensus 3 l~~i~GpM~sGKS~eLi~~~~~~~~~~~~v~~~kp~~D~R~~~~~I~s~~g~~~~~~~~~~~~~~~~~~~~~~~~dvI~I 82 (176)
T PF00265_consen 3 LEFITGPMFSGKSTELIRRIHRYEIAGKKVLVFKPAIDTRYGEDKIVSHDGISLEAIVDPIDNLFEIIDILENDYDVIGI 82 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEEESTSCCCCSSEEEHTTSCEEEEESSEESSGGGGGGGCCTTCSEEEE
T ss_pred EEEEECCcCChhHHHHHHHHHHHHhCCCeEEEEEecccCcCCCCeEEecCCCcccccccchhhHHHHHHHhccCCCEEEE
Confidence 4455555554 45666667778889999999987532 14778888877654 11111 11234898888
Q ss_pred cCCcchHHhhhcCHHHHHHHHHHHHcCCcEE
Q 023800 229 PGGLGGAQAFAKSKKLVNMLKKQKESNRPYG 259 (277)
Q Consensus 229 pGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~ 259 (277)
==+ + +.. +++.++++....+|++|.
T Consensus 83 DEa----Q-Ff~-~~i~~l~~~~~~~g~~Vi 107 (176)
T PF00265_consen 83 DEA----Q-FFD-EQIVQLVEILANKGIPVI 107 (176)
T ss_dssp SSG----G-GST-TTHHHHHHHHHHTT-EEE
T ss_pred ech----H-hhH-HHHHHHHHHHHhCCCeEE
Confidence 422 2 223 688888888888888773
No 340
>PRK05380 pyrG CTP synthetase; Validated
Probab=36.54 E-value=49 Score=31.72 Aligned_cols=30 Identities=10% Similarity=0.040 Sum_probs=25.0
Q ss_pred ChHHHHHHHHHHhCCCEEEEEchhHHHHHHH
Q 023800 60 SEVLESIVKKQASDGRLYAAICVFLAVALGS 90 (277)
Q Consensus 60 ~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~ 90 (277)
.+....+++...++++|+.+||-|.. +++-
T Consensus 358 ~~g~i~~i~~a~e~~iPiLGIClGmQ-ll~v 387 (533)
T PRK05380 358 IEGKILAIRYARENNIPFLGICLGMQ-LAVI 387 (533)
T ss_pred cccHHHHHHHHHHCCCcEEEEchHHH-HHHH
Confidence 34567889999999999999999998 5654
No 341
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=36.39 E-value=1.2e+02 Score=25.42 Aligned_cols=35 Identities=9% Similarity=-0.094 Sum_probs=22.6
Q ss_pred eEEEEec---CCCchhhHHHHHHHHHhCCCeEEEEeeC
Q 023800 162 QILVPIA---NGSEEMEAVIIIDILRRAKANVVVASVA 196 (277)
Q Consensus 162 kV~ill~---~g~~~~e~~~~~~~l~~a~~~v~~vs~~ 196 (277)
+|++++. +.|...-+.+..+.+++.|+++.++...
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~ 38 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEALGGDLRVYDAG 38 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHHcCCEEEEECCC
Confidence 4677765 2333334566777888889998887543
No 342
>TIGR02922 conserved hypothetical protein TIGR02922. Two members of this family are found in Colwellia psychrerythraea 34H and one each in various other species of Colwellia and Shewanella. One member from C. psychrerythraea is of special interest because it is preceded by the same cis-regulatory site as a number of genes that have the PEP-CTERM domain described by TIGR02595.
Probab=36.29 E-value=22 Score=23.26 Aligned_cols=24 Identities=13% Similarity=0.277 Sum_probs=17.4
Q ss_pred HHHHHcCCcEEEEchhhHHhhhhC
Q 023800 249 KKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 249 ~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
-+-+++||.|.++|.|-..+|...
T Consensus 38 PqeFkrGKsIiAV~EGe~~ilNsv 61 (67)
T TIGR02922 38 PQEFKRGKSIIAVCEGEITILNSV 61 (67)
T ss_pred chHHcCCCeEEEEEecceeehhhh
Confidence 345789999999999976444433
No 343
>PRK07308 flavodoxin; Validated
Probab=35.38 E-value=1.5e+02 Score=22.61 Aligned_cols=84 Identities=18% Similarity=0.181 Sum_probs=42.2
Q ss_pred eEEEEecCCC-chhh-HHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhh
Q 023800 162 QILVPIANGS-EEME-AVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA 239 (277)
Q Consensus 162 kV~ill~~g~-~~~e-~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~ 239 (277)
++.|+.+... +-.. ...+.+.++..|.++++...+.. ...++ .++|.|++........ .
T Consensus 3 ~~~IvY~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~---------------~~~~l--~~~d~vi~g~~t~g~G--~ 63 (146)
T PRK07308 3 LAKIVYASMTGNTEEIADIVADKLRELGHDVDVDECTTV---------------DASDF--EDADIAIVATYTYGDG--E 63 (146)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHhCCCceEEEecccC---------------CHhHh--ccCCEEEEEeCccCCC--C
Confidence 5666655422 2222 33456777778887776544321 11222 3578888853211101 1
Q ss_pred cCHHHHHHHHHH---HHcCCcEEEEchh
Q 023800 240 KSKKLVNMLKKQ---KESNRPYGAICAS 264 (277)
Q Consensus 240 ~~~~~~~~l~~~---~~~~~~i~aiC~G 264 (277)
.++.+.+|+... .-+++.++.+..|
T Consensus 64 ~p~~~~~fl~~l~~~~l~~k~~~vfG~G 91 (146)
T PRK07308 64 LPDEIVDFYEDLADLDLSGKIYGVVGSG 91 (146)
T ss_pred CCHHHHHHHHHHhcCCCCCCEEEEEeeC
Confidence 223455555443 2357777777664
No 344
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=35.31 E-value=44 Score=30.96 Aligned_cols=30 Identities=20% Similarity=0.074 Sum_probs=23.7
Q ss_pred ChHHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800 60 SEVLESIVKKQASDGRLYAAICVFLAVALGSW 91 (277)
Q Consensus 60 ~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (277)
.+...+.+++.. .+++|.+||-|-. +|+.+
T Consensus 297 ~~~~ie~ik~l~-~~iPIlGICLGhQ-lLa~A 326 (415)
T PLN02771 297 VPYAVETVKELL-GKVPVFGICMGHQ-LLGQA 326 (415)
T ss_pred hhHHHHHHHHHH-hCCCEEEEcHHHH-HHHHh
Confidence 355667777765 4789999999999 88886
No 345
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=35.17 E-value=31 Score=30.34 Aligned_cols=104 Identities=12% Similarity=0.144 Sum_probs=58.0
Q ss_pred CCCeEEEEe-cCCCchhhHHHHHHHHHhCC--CeEEEEeeCCCceEE-cccCcEEEeCcchhhhccCCccEEEEcCCcch
Q 023800 159 NSPQILVPI-ANGSEEMEAVIIIDILRRAK--ANVVVASVADKLEIL-ASCQVKLVADMLIDEAAKLSYDLIVLPGGLGG 234 (277)
Q Consensus 159 ~~~kV~ill-~~g~~~~e~~~~~~~l~~a~--~~v~~vs~~~~~~v~-~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~ 234 (277)
++.||+|+- .|.-..+|. -++..|.... .+++++.+..- .-+ ++....-.--.+++++....||++||.|..
T Consensus 34 rpL~I~ILNLMP~K~~TE~-Q~lRlL~ntplqv~i~~~~~~sh-~~k~t~~~hl~~fY~~f~~ik~~~fDGlIITGAP-- 109 (300)
T TIGR01001 34 RPLEILILNLMPKKIETEN-QFLRLLSNSPLQVNITLLRTDSR-KSKNTPIEHLNKFYTTFEAVKDRKFDGLIITGAP-- 109 (300)
T ss_pred cceeEEEEecCCccHHHHH-HHHHHhcCCCCceEEEEEEeccc-cCCCCCHHHHHHHhhCHHHHhcCCCCEEEEcCCC--
Confidence 357888885 355556663 4455554443 35666665432 111 110000011245777766899999999964
Q ss_pred HHhhh-----cCHHHHHHHHHHHHcCCcEEEEchhhH
Q 023800 235 AQAFA-----KSKKLVNMLKKQKESNRPYGAICASPA 266 (277)
Q Consensus 235 ~~~~~-----~~~~~~~~l~~~~~~~~~i~aiC~G~~ 266 (277)
...+. .-+++.+.+...-++-.-..-+|=|+.
T Consensus 110 vE~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAq 146 (300)
T TIGR01001 110 VELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQ 146 (300)
T ss_pred cCCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 22221 124555555555556666888898887
No 346
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.97 E-value=81 Score=24.18 Aligned_cols=102 Identities=19% Similarity=0.118 Sum_probs=55.8
Q ss_pred CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCC-----ceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchH
Q 023800 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADK-----LEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGA 235 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~-----~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~ 235 (277)
-||+++-.+|+...=.-...-++| . .=.+..++.. +...+..|+++. .+.+ .+..|+|++-||..-+
T Consensus 27 eki~fvG~~GvCtPFAeL~~favR--D-ke~~fipd~d~ek~rkl~~~d~G~ql~---e~e~--~n~aDvvVLlGGLaMP 98 (154)
T COG4090 27 EKIVFVGCPGVCTPFAELLAFAVR--D-KEQYFIPDLDFEKARKLELTDHGYQLG---EREE--LNSADVVVLLGGLAMP 98 (154)
T ss_pred ceEEEecCCcccccHHHHHHHHhh--c-hheeecCCcChhHhheeeeeccceecC---Cccc--cccccEEEEEcccccC
Confidence 578888888865321111111222 1 1223344432 123455677662 2233 2458999999997423
Q ss_pred HhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCC
Q 023800 236 QAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEPHGL 274 (277)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGl 274 (277)
..-....+..+++.+. .++.+.++|-=.. ++++|.
T Consensus 99 ~~gv~~d~~kel~ee~--~~kkliGvCfm~m--F~ragW 133 (154)
T COG4090 99 KIGVTPDDAKELLEEL--GNKKLIGVCFMNM--FERAGW 133 (154)
T ss_pred cCCCCHHHHHHHHHhc--CCCceEEeeHHHH--HHHcCc
Confidence 3223445666666633 3568999998766 677774
No 347
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=34.93 E-value=2.7e+02 Score=24.81 Aligned_cols=127 Identities=16% Similarity=0.108 Sum_probs=65.4
Q ss_pred CchhhcccC-ccccccCCCCeEEEEec---C-CCchhhHHHHHHHHHhCCC-eEEEEeeCCC----ceEEcccCcEEEeC
Q 023800 143 DEFTIAEFN-PVQWTFDNSPQILVPIA---N-GSEEMEAVIIIDILRRAKA-NVVVASVADK----LEILASCQVKLVAD 212 (277)
Q Consensus 143 ~~~~~~~~~-~~~~~~~~~~kV~ill~---~-g~~~~e~~~~~~~l~~a~~-~v~~vs~~~~----~~v~~~~g~~i~~~ 212 (277)
.+|+..|.. +...++ ..+.|.|+-. | +-..+|+....+++++++. ++.++-|=-. .......+..+...
T Consensus 36 ~~FpdGE~~v~i~~~v-~g~~V~iiqs~~~p~nd~lmeLl~~~~alr~~~a~~i~~ViPYl~YaRQDr~~~~~~~~isak 114 (319)
T PRK04923 36 TRFSDGEVQVEIEESV-RRQEVFVIQPTCAPSAENLMELLVLIDALKRASAASVTAVIPYFGYSRQDRRMRSSRVPITAK 114 (319)
T ss_pred EECCCCCEEEEECCCc-CCCeEEEEecCCCCCchHHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccCCCCCccHH
Confidence 344545544 233333 3467877742 3 4568999999999999986 5666655211 00110112122211
Q ss_pred cchhhhccCCccEEEEcCCcc---------hHHhhhcCHHHHHHHHHHHH-cCCcEEEEchhhHHhhhh
Q 023800 213 MLIDEAAKLSYDLIVLPGGLG---------GAQAFAKSKKLVNMLKKQKE-SNRPYGAICASPALVLEP 271 (277)
Q Consensus 213 ~~~~~~~~~~~D~livpGG~~---------~~~~~~~~~~~~~~l~~~~~-~~~~i~aiC~G~~~lLa~ 271 (277)
..-.-+....+|-|+.---+. +.+++...+.+.+|+.+.++ +...|.+.-.|+. -.|+
T Consensus 115 ~va~ll~~~g~d~vitvD~H~~~~~~~f~~p~~~l~~~~~l~~~i~~~~~~~~~vVVsPD~Ga~-~rA~ 182 (319)
T PRK04923 115 VAAKMISAMGADRVLTVDLHADQIQGFFDVPVDNVYASPLLLADIWRAYGTDNLIVVSPDVGGV-VRAR 182 (319)
T ss_pred HHHHHHHhcCCCEEEEEeCChHHHHhhcCCCceeeeChHHHHHHHHHhcCCCCCEEEEECCchH-HHHH
Confidence 111111112456665543211 11233445677888865432 4567888888887 5654
No 348
>PRK00861 putative lipid kinase; Reviewed
Probab=34.17 E-value=2.4e+02 Score=24.54 Aligned_cols=10 Identities=0% Similarity=-0.081 Sum_probs=6.0
Q ss_pred CCeEEEEecC
Q 023800 160 SPQILVPIAN 169 (277)
Q Consensus 160 ~~kV~ill~~ 169 (277)
++++.|++-|
T Consensus 2 ~~~~~iI~NP 11 (300)
T PRK00861 2 TRSACLIFNP 11 (300)
T ss_pred CceEEEEECC
Confidence 3567766655
No 349
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=34.15 E-value=64 Score=27.61 Aligned_cols=39 Identities=23% Similarity=0.304 Sum_probs=29.2
Q ss_pred ccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhH
Q 023800 219 AKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPA 266 (277)
Q Consensus 219 ~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~ 266 (277)
+++++|++++.||.+ -+++..+.+...+++|.+|-.|..
T Consensus 22 ~~~~~Dlvi~iGGDG---------TlL~a~~~~~~~~~PvlGIN~G~l 60 (246)
T PRK04761 22 PIEEADVIVALGGDG---------FMLQTLHRYMNSGKPVYGMNRGSV 60 (246)
T ss_pred CcccCCEEEEECCCH---------HHHHHHHHhcCCCCeEEEEeCCCC
Confidence 345689999999964 345666776777889999888864
No 350
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.71 E-value=79 Score=20.29 Aligned_cols=29 Identities=21% Similarity=0.222 Sum_probs=24.2
Q ss_pred EEecCCCchhhHHHHHHHHHhCCCeEEEE
Q 023800 165 VPIANGSEEMEAVIIIDILRRAKANVVVA 193 (277)
Q Consensus 165 ill~~g~~~~e~~~~~~~l~~a~~~v~~v 193 (277)
++++.|+...++...++.+++.|..+.+-
T Consensus 3 ~ll~~g~~~~el~~~l~~~r~~~~~~~~k 31 (58)
T PF12646_consen 3 FLLFSGFSGEELDKFLDALRKAGIPIPLK 31 (58)
T ss_pred EEEECCCCHHHHHHHHHHHHHcCCCcceE
Confidence 46789999999999999999998754443
No 351
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.64 E-value=2.9e+02 Score=26.77 Aligned_cols=93 Identities=16% Similarity=0.150 Sum_probs=53.1
Q ss_pred CCCeEEEEecCCC-chhhH-HHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHH
Q 023800 159 NSPQILVPIANGS-EEMEA-VIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ 236 (277)
Q Consensus 159 ~~~kV~ill~~g~-~~~e~-~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~ 236 (277)
+++||+|+.-++- ...++ ....+.|...|.++.+-..... .+... ..-..+ ...+ ..+.|.+++-||.+
T Consensus 289 ~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~-~~~~~--~~~~~~-~~~~--~~~~dlvi~lGGDG--- 359 (569)
T PRK14076 289 KPTKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYN-KLKNR--LNEECN-LIDD--IEEISHIISIGGDG--- 359 (569)
T ss_pred CCcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhh-hhccc--cccccc-cccc--ccCCCEEEEECCcH---
Confidence 4678999876654 33333 3456678888888766533221 11100 000000 0111 12579999999964
Q ss_pred hhhcCHHHHHHHHHHHHcCCcEEEEchhhH
Q 023800 237 AFAKSKKLVNMLKKQKESNRPYGAICASPA 266 (277)
Q Consensus 237 ~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~ 266 (277)
-++...+.+...+.||.+|-.|..
T Consensus 360 ------T~L~aa~~~~~~~~PilGin~G~l 383 (569)
T PRK14076 360 ------TVLRASKLVNGEEIPIICINMGTV 383 (569)
T ss_pred ------HHHHHHHHhcCCCCCEEEEcCCCC
Confidence 334555666667889999988874
No 352
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=33.15 E-value=1.8e+02 Score=25.67 Aligned_cols=142 Identities=16% Similarity=0.105 Sum_probs=73.8
Q ss_pred HHHHhhcccccc--cCCCchhhcccC-ccccccCCCCeEEEEec---C-CCchhhHHHHHHHHHhCCC-eEEEEeeCCCc
Q 023800 128 ADEVSGARVMRA--NHGDEFTIAEFN-PVQWTFDNSPQILVPIA---N-GSEEMEAVIIIDILRRAKA-NVVVASVADKL 199 (277)
Q Consensus 128 a~~v~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~kV~ill~---~-g~~~~e~~~~~~~l~~a~~-~v~~vs~~~~~ 199 (277)
|+++++.+.++- ....+|+..|.. +...++ +.+.|.|+-. | +-..+|+....++++++|. ++..+-|=-+.
T Consensus 2 a~~ia~~l~~~l~~~~~~~F~DGE~~vri~~~v-~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~~a~~i~~ViPYl~Y 80 (304)
T PRK03092 2 AEEVAKELGVEVTPTTAYDFANGEIYVRFEESV-RGCDAFVLQSHTAPINKWLMEQLIMIDALKRASAKRITVVLPFYPY 80 (304)
T ss_pred HHHHHHHhCCceeeeEEEECCCCCEEEEECCCC-CCCEEEEEeCCCCCCcHHHHHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 455566655442 234445555544 333334 4467877765 2 3457899999999999986 46666542110
Q ss_pred ---eEEcccCcEEEeCcchhhhccCCccEEEEcCCcc---------hHHhhhcCHHHHHHHHHHHH-cCCcEEEEchhhH
Q 023800 200 ---EILASCQVKLVADMLIDEAAKLSYDLIVLPGGLG---------GAQAFAKSKKLVNMLKKQKE-SNRPYGAICASPA 266 (277)
Q Consensus 200 ---~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~---------~~~~~~~~~~~~~~l~~~~~-~~~~i~aiC~G~~ 266 (277)
.-....|-.+.....-.-+....+|-|+..--+. +.+++...+.+.+|+++.++ ++..+.+.-.|+.
T Consensus 81 aRQDr~~~~~e~isak~va~lL~~~g~d~vitvD~H~~~~~~~f~~p~~~l~~~~~la~~i~~~~~~~~~vvVspd~Ga~ 160 (304)
T PRK03092 81 ARQDKKHRGREPISARLVADLFKTAGADRIMTVDLHTAQIQGFFDGPVDHLFAMPLLADYVRDKYDLDNVTVVSPDAGRV 160 (304)
T ss_pred cccccccCCCCCccHHHHHHHHHhcCCCeEEEEecChHHHHhhcCCCeeeEechHHHHHHHHHhcCCCCcEEEEecCchH
Confidence 0011122222221111111112356565543221 11223345677888876543 4567899999987
Q ss_pred Hhhhh
Q 023800 267 LVLEP 271 (277)
Q Consensus 267 ~lLa~ 271 (277)
-+|+
T Consensus 161 -~~a~ 164 (304)
T PRK03092 161 -RVAE 164 (304)
T ss_pred -HHHH
Confidence 5654
No 353
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=33.04 E-value=74 Score=28.95 Aligned_cols=89 Identities=16% Similarity=0.138 Sum_probs=61.9
Q ss_pred CCCEEecCccccccccC--CCccchhcc-ccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHcC----C-C----CCCC-
Q 023800 32 HGVKIVADALVSNCRDA--CGMPGATNL-KESEVLESIVKKQASDGRLYAAICVFLAVALGSWG----L-L----KGLK- 98 (277)
Q Consensus 32 ~g~~v~~d~~~~~~~~~--gG~~~~~~~-~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aG----l-l----~g~~- 98 (277)
.|+.+..+..++..... ||.+..... ...+++.+.++...+++.++.-++.|+. +|..-+ + + ++.+
T Consensus 11 ~~~~~~~~~~L~~~tt~~iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSN-lLv~D~g~~GvVI~l~~~~i~i 89 (363)
T PRK13903 11 AGAEVAEDVPLAPLTTLRVGGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSN-LVIADDGFDGTVVRVATRGVTV 89 (363)
T ss_pred cCcEeeCCCCcccccEeecCccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCee-EeECCCCccEEEEEeCCCcEEE
Confidence 46667777777666655 774222111 3457788888888888999999999999 665543 1 1 1111
Q ss_pred C--CCeEcCCCCCCHHHHHHHHHHH
Q 023800 99 D--GKVVTTRGPGTPMEFVVALVEQ 121 (277)
Q Consensus 99 d--g~~iT~~g~~~~~~~a~~li~~ 121 (277)
+ ++.+++.+...+.+++.+..++
T Consensus 90 ~~~~~~v~vgAG~~~~~l~~~a~~~ 114 (363)
T PRK13903 90 DCGGGLVRAEAGAVWDDVVARTVEA 114 (363)
T ss_pred eCCCCEEEEEcCCCHHHHHHHHHHc
Confidence 4 7889998888889998888876
No 354
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=32.43 E-value=1.3e+02 Score=23.41 Aligned_cols=37 Identities=22% Similarity=0.425 Sum_probs=30.1
Q ss_pred CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeC
Q 023800 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVA 196 (277)
Q Consensus 160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~ 196 (277)
.+|+.|++.||....++....+.++..|.++..++..
T Consensus 103 ~~k~iillTDG~~~~~~~~~a~~lk~~gi~i~~ig~g 139 (164)
T cd01482 103 VPKVVILITDGKSQDDVELPARVLRNLGVNVFAVGVK 139 (164)
T ss_pred CCEEEEEEcCCCCCchHHHHHHHHHHCCCEEEEEecC
Confidence 3689999999987666767788889999998888764
No 355
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=32.36 E-value=3.4e+02 Score=23.85 Aligned_cols=24 Identities=13% Similarity=0.083 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHhCCCeEEEEeeC
Q 023800 173 EMEAVIIIDILRRAKANVVVASVA 196 (277)
Q Consensus 173 ~~e~~~~~~~l~~a~~~v~~vs~~ 196 (277)
.-.+-...+.|+.+|++.+..-..
T Consensus 19 ~~~~~~~~~~l~~~g~~~~~~~t~ 42 (301)
T COG1597 19 KKLLREVEELLEEAGHELSVRVTE 42 (301)
T ss_pred hhHHHHHHHHHHhcCCeEEEEEee
Confidence 344566777888888876666443
No 356
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=32.20 E-value=1.8e+02 Score=25.16 Aligned_cols=61 Identities=15% Similarity=0.044 Sum_probs=33.3
Q ss_pred HHHHHhhcccccccCCCchhhcccCccccccCCCCeEEEEecC---CCchhhHHHHHHHHHhCCCeEEEEeeC
Q 023800 127 KADEVSGARVMRANHGDEFTIAEFNPVQWTFDNSPQILVPIAN---GSEEMEAVIIIDILRRAKANVVVASVA 196 (277)
Q Consensus 127 ~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kV~ill~~---g~~~~e~~~~~~~l~~a~~~v~~vs~~ 196 (277)
...++++.|.|.++...+ .+. -.++..|++++.+ .|...=+.+..+.++..||++.+....
T Consensus 37 rV~~~a~elgY~pn~~a~-------~l~--~~~~~~Igvv~~~~~~~~~~~l~~gi~~~~~~~g~~~~~~~~~ 100 (328)
T PRK11303 37 KVMAVVREHNYHPNAVAA-------GLR--AGRTRSIGLIIPDLENTSYARIAKYLERQARQRGYQLLIACSD 100 (328)
T ss_pred HHHHHHHHhCCCCCHHHH-------Hhh--cCCCceEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 334456667776544221 011 1234678888743 122222345666777889998887543
No 357
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=31.97 E-value=97 Score=25.15 Aligned_cols=37 Identities=16% Similarity=0.332 Sum_probs=30.5
Q ss_pred CeEEEEecCCCchh----hHHHHHHHHHhCCCeEEEEeeCC
Q 023800 161 PQILVPIANGSEEM----EAVIIIDILRRAKANVVVASVAD 197 (277)
Q Consensus 161 ~kV~ill~~g~~~~----e~~~~~~~l~~a~~~v~~vs~~~ 197 (277)
+||+|++.||.+.. .+..+.+.++..|.++..++...
T Consensus 109 ~kv~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG~ 149 (192)
T cd01473 109 PKVTMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVGA 149 (192)
T ss_pred CeEEEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEecc
Confidence 68999999998753 46677888999999999998753
No 358
>COG5441 Uncharacterized conserved protein [Function unknown]
Probab=31.96 E-value=2e+02 Score=25.50 Aligned_cols=65 Identities=15% Similarity=0.131 Sum_probs=43.0
Q ss_pred CCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhh---hccCCccEEEEc
Q 023800 159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDE---AAKLSYDLIVLP 229 (277)
Q Consensus 159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~---~~~~~~D~livp 229 (277)
++++|.++-.-.....|+....|..+.+|-.+..+-.. +.+.-...+|..-++ ..+...++++--
T Consensus 1 ~~krIyVvgT~DTKg~EL~ylad~I~~aG~~~v~vDvs------~~~~~~~~~dis~~~VA~~hp~~~qAv~~~ 68 (401)
T COG5441 1 NMKRIYVVGTADTKGEELAYLADLIEAAGGSPVLVDVS------TLRNPTSEVDISAEDVAGAHPGGRQAVLDG 68 (401)
T ss_pred CCceEEEEecCCCcchhHHHHHHHHHHcCCCeEEEEee------ccCCCCCCcccCHHHHhhhCCCcceeEecc
Confidence 35788888888888999999999999999887777432 223334444544333 334455555543
No 359
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=31.65 E-value=1.2e+02 Score=25.20 Aligned_cols=36 Identities=11% Similarity=0.238 Sum_probs=30.3
Q ss_pred CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeC
Q 023800 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVA 196 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~ 196 (277)
+|+.|++.||....++..+...++..|.++..++..
T Consensus 109 ~kvvillTDG~s~~~~~~~a~~lk~~gv~i~~VgvG 144 (224)
T cd01475 109 PRVGIVVTDGRPQDDVSEVAAKARALGIEMFAVGVG 144 (224)
T ss_pred CeEEEEEcCCCCcccHHHHHHHHHHCCcEEEEEeCC
Confidence 689999999987667777888899999888888764
No 360
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=31.47 E-value=1.9e+02 Score=23.76 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=27.2
Q ss_pred cCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhh
Q 023800 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASP 265 (277)
Q Consensus 220 ~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~ 265 (277)
..+||+||+..... . .-+++-.+-|+++.++|+.+.++..++
T Consensus 50 L~~~Dvvv~~~~~~--~--~l~~~~~~al~~~v~~Ggglv~lH~~~ 91 (217)
T PF06283_consen 50 LKGYDVVVFYNTGG--D--ELTDEQRAALRDYVENGGGLVGLHGAA 91 (217)
T ss_dssp HCT-SEEEEE-SSC--C--GS-HHHHHHHHHHHHTT-EEEEEGGGG
T ss_pred hcCCCEEEEECCCC--C--cCCHHHHHHHHHHHHcCCCEEEEcccc
Confidence 35799999986431 1 135567778888889999999998443
No 361
>PF09558 DUF2375: Protein of unknown function (DUF2375); InterPro: IPR014271 Two members of this family are found in Colwellia psychrerythraea (strain 34H / ATCC BAA-681) and one each in various other species of Colwellia and Shewanella. One member from C. psychrerythraea is of special interest because it is preceded by the same cis-regulatory site as a number of genes that have the PEP-CTERM domain described by IPR013424 from INTERPRO.
Probab=31.36 E-value=26 Score=23.33 Aligned_cols=25 Identities=8% Similarity=0.106 Sum_probs=18.1
Q ss_pred HHHHHHcCCcEEEEchhhHHhhhhC
Q 023800 248 LKKQKESNRPYGAICASPALVLEPH 272 (277)
Q Consensus 248 l~~~~~~~~~i~aiC~G~~~lLa~a 272 (277)
|-+-+++||.|.++|.|-..+|...
T Consensus 39 iP~~Fr~GKsIiAVleGe~~iLnsv 63 (71)
T PF09558_consen 39 IPQSFRRGKSIIAVLEGECKILNSV 63 (71)
T ss_pred ChHHHcCCceEEEEEcCceehhhhh
Confidence 3456789999999999976444443
No 362
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=31.17 E-value=1.4e+02 Score=25.73 Aligned_cols=38 Identities=24% Similarity=0.340 Sum_probs=31.9
Q ss_pred CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCC
Q 023800 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADK 198 (277)
Q Consensus 160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~ 198 (277)
.+||++--=||.....+....+.|+..| +|.+|+|..+
T Consensus 5 ~M~ILltNDDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~ 42 (257)
T PRK13932 5 KPHILVCNDDGIEGEGIHVLAASMKKIG-RVTVVAPAEP 42 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHhCC-CEEEEcCCCC
Confidence 4577666668999999999999999887 8999999875
No 363
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=30.99 E-value=44 Score=32.09 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800 62 VLESIVKKQASDGRLYAAICVFLAVALGSW 91 (277)
Q Consensus 62 ~~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (277)
...++++.+ ..+++|.+||-|.. +|+.+
T Consensus 62 ~~~~li~~~-~~~~PvLGIClG~Q-lLa~a 89 (534)
T PRK14607 62 ISVEVIRHF-SGKVPILGVCLGHQ-AIGYA 89 (534)
T ss_pred ccHHHHHHh-hcCCCEEEEcHHHH-HHHHH
Confidence 346677764 67899999999999 88886
No 364
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=30.80 E-value=3.1e+02 Score=24.41 Aligned_cols=112 Identities=10% Similarity=0.094 Sum_probs=58.2
Q ss_pred CCCeEEEEec---C-CCchhhHHHHHHHHHhCCC-eEEEEeeCCCc---eEEcccCcEEEeCcchhhhccCCccEEEEcC
Q 023800 159 NSPQILVPIA---N-GSEEMEAVIIIDILRRAKA-NVVVASVADKL---EILASCQVKLVADMLIDEAAKLSYDLIVLPG 230 (277)
Q Consensus 159 ~~~kV~ill~---~-g~~~~e~~~~~~~l~~a~~-~v~~vs~~~~~---~v~~~~g~~i~~~~~~~~~~~~~~D~livpG 230 (277)
..+.|.|+-. | +-..+|+....+++++++. ++.++-|=-.. --....|-.+.....-.-+....+|-|+.-.
T Consensus 51 rg~dV~iv~s~~~~~nd~lmelll~~~alr~~~a~~i~~V~PYl~YaRQDr~~~~~e~isak~~a~ll~~~g~d~vit~D 130 (320)
T PRK02269 51 RGHHVFILQSTSSPVNDNLMEILIMVDALKRASAESINVVMPYYGYARQDRKARSREPITSKLVANMLEVAGVDRLLTVD 130 (320)
T ss_pred CCCEEEEEecCCCCccchHHHHHHHHHHHHHhCCCeEEEEEeccccchhhcccCCCCCchHHHHHHHHhhcCCCEEEEEC
Confidence 3467777654 2 3467999999999999986 56666552110 0011122222211111111112355555543
Q ss_pred Ccc---------hHHhhhcCHHHHHHHHHH-H-HcCCcEEEEchhhHHhhhh
Q 023800 231 GLG---------GAQAFAKSKKLVNMLKKQ-K-ESNRPYGAICASPALVLEP 271 (277)
Q Consensus 231 G~~---------~~~~~~~~~~~~~~l~~~-~-~~~~~i~aiC~G~~~lLa~ 271 (277)
-+. +.+.+...+.+.+|+++. + ...-.|.+.-.|+. .+|+
T Consensus 131 ~H~~~~~~~f~~p~~~l~~~p~l~~~i~~~~~~~~~~vvVsPd~G~~-~~A~ 181 (320)
T PRK02269 131 LHAAQIQGFFDIPVDHLMGAPLIADYFDRRGLVGDDVVVVSPDHGGV-TRAR 181 (320)
T ss_pred CChHHHhccccCCchhhhhHHHHHHHHHHhCCCCCCcEEEEECccHH-HHHH
Confidence 221 112233345666777654 2 23457899999988 6765
No 365
>PRK03670 competence damage-inducible protein A; Provisional
Probab=30.71 E-value=2.9e+02 Score=23.68 Aligned_cols=74 Identities=15% Similarity=0.181 Sum_probs=42.3
Q ss_pred hhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHH-h-------------h
Q 023800 173 EMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ-A-------------F 238 (277)
Q Consensus 173 ~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~-~-------------~ 238 (277)
+.-...+...|...|+++..+..-++.+ -.|. ..+...-...+|+||+.||.+... + +
T Consensus 19 dtN~~~la~~L~~~G~~v~~~~iV~Dd~------~~I~--~~l~~a~~~~~DlVIttGGlGpt~dD~T~eava~a~g~~l 90 (252)
T PRK03670 19 DSNSAFIAQKLTEKGYWVRRITTVGDDV------EEIK--SVVLEILSRKPEVLVISGGLGPTHDDVTMLAVAEALGREL 90 (252)
T ss_pred ehhHHHHHHHHHHCCCEEEEEEEcCCCH------HHHH--HHHHHHhhCCCCEEEECCCccCCCCCchHHHHHHHhCCCC
Confidence 4445567777888998876654433200 0000 112222112479999999864211 1 2
Q ss_pred hcCHHHHHHHHHHHHc
Q 023800 239 AKSKKLVNMLKKQKES 254 (277)
Q Consensus 239 ~~~~~~~~~l~~~~~~ 254 (277)
..+++..+.|++++++
T Consensus 91 ~~~~e~~~~i~~~~~~ 106 (252)
T PRK03670 91 VLCEDCLERIKEFYEE 106 (252)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4478889999987754
No 366
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=30.70 E-value=2e+02 Score=22.88 Aligned_cols=89 Identities=10% Similarity=0.074 Sum_probs=49.6
Q ss_pred CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhh
Q 023800 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA 239 (277)
Q Consensus 160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~ 239 (277)
.++|.++ |-....+....+.+++.--.+.+++...+ +..... .+..++.++....|+|+|.=|.+ .
T Consensus 46 ~~~v~ll---G~~~~~~~~~~~~l~~~yp~l~i~g~~~g-~~~~~~-----~~~i~~~I~~~~pdiv~vglG~P--k--- 111 (171)
T cd06533 46 GLRVFLL---GAKPEVLEKAAERLRARYPGLKIVGYHHG-YFGPEE-----EEEIIERINASGADILFVGLGAP--K--- 111 (171)
T ss_pred CCeEEEE---CCCHHHHHHHHHHHHHHCCCcEEEEecCC-CCChhh-----HHHHHHHHHHcCCCEEEEECCCC--H---
Confidence 3567766 56666667777788887667777773322 211100 01134556667899999976642 2
Q ss_pred cCHHHHHHHHHHHHcCCcEEEEchhhH
Q 023800 240 KSKKLVNMLKKQKESNRPYGAICASPA 266 (277)
Q Consensus 240 ~~~~~~~~l~~~~~~~~~i~aiC~G~~ 266 (277)
.+ .|+.+..++...-..+|.|.+
T Consensus 112 -QE---~~~~~~~~~l~~~v~~~vG~~ 134 (171)
T cd06533 112 -QE---LWIARHKDRLPVPVAIGVGGS 134 (171)
T ss_pred -HH---HHHHHHHHHCCCCEEEEecee
Confidence 12 466655555433444444443
No 367
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=30.37 E-value=3.4e+02 Score=22.95 Aligned_cols=40 Identities=13% Similarity=0.175 Sum_probs=30.4
Q ss_pred cCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (277)
Q Consensus 220 ~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~ 271 (277)
.+.+|+++|..- .+ +..+.+|+.+ ++++.+||..+. ..|.
T Consensus 67 ~~GvdaiiIaCf--------~D-Pgl~~~Re~~--~~PviGi~eAsv-~~A~ 106 (230)
T COG4126 67 EQGVDAIIIACF--------SD-PGLAAARERA--AIPVIGICEASV-LAAL 106 (230)
T ss_pred ccCCcEEEEEec--------CC-hHHHHHHHHh--CCCceehhHHHH-HHHH
Confidence 456999999753 23 6677888877 779999999998 6653
No 368
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.97 E-value=1.4e+02 Score=25.01 Aligned_cols=84 Identities=6% Similarity=-0.053 Sum_probs=44.7
Q ss_pred eEEEEecC---CCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh
Q 023800 162 QILVPIAN---GSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF 238 (277)
Q Consensus 162 kV~ill~~---g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~ 238 (277)
||++++.+ .|...-+.+..+.+++.|+++.+....+. + .-+ ...++.......|+|++.+..
T Consensus 1 ~igv~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~~~~~~~-~-------~~~-~~~i~~~~~~~~Dgiii~~~~------ 65 (282)
T cd06318 1 KIGFSQYTLNSPFFAALTEAAKAHAKALGYELISTDAQGD-L-------TKQ-IADVEDLLTRGVNVLIINPVD------ 65 (282)
T ss_pred CeeEEeccccCHHHHHHHHHHHHHHHHcCCEEEEEcCCCC-H-------HHH-HHHHHHHHHcCCCEEEEecCC------
Confidence 46777643 34444456777888888999877654332 1 000 012222333468888886431
Q ss_pred hcCHHHHHHHHHHHHcCCcEEEEc
Q 023800 239 AKSKKLVNMLKKQKESNRPYGAIC 262 (277)
Q Consensus 239 ~~~~~~~~~l~~~~~~~~~i~aiC 262 (277)
.+.+.+.+++..+.+.++..+-
T Consensus 66 --~~~~~~~i~~~~~~~iPvV~~~ 87 (282)
T cd06318 66 --PEGLVPAVAAAKAAGVPVVVVD 87 (282)
T ss_pred --ccchHHHHHHHHHCCCCEEEec
Confidence 1112234555556666666553
No 369
>PRK13059 putative lipid kinase; Reviewed
Probab=29.96 E-value=3.7e+02 Score=23.38 Aligned_cols=36 Identities=14% Similarity=-0.017 Sum_probs=21.2
Q ss_pred CeEEEEecCC--C-c-hhhHHHHHHHHHhCCCeEEEEeeC
Q 023800 161 PQILVPIANG--S-E-EMEAVIIIDILRRAKANVVVASVA 196 (277)
Q Consensus 161 ~kV~ill~~g--~-~-~~e~~~~~~~l~~a~~~v~~vs~~ 196 (277)
+|+.+++-|. - . .-++....+.|+++|+++.+...+
T Consensus 2 ~~~~~I~NP~aG~g~~~~~~~~i~~~l~~~g~~~~~~~~~ 41 (295)
T PRK13059 2 KKVKFIYNPYSGENAIISELDKVIRIHQEKGYLVVPYRIS 41 (295)
T ss_pred cEEEEEECCcccchhHHHHHHHHHHHHHHCCcEEEEEEcc
Confidence 4666666552 1 1 233445667788888887665443
No 370
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=29.71 E-value=1.9e+02 Score=25.86 Aligned_cols=96 Identities=15% Similarity=0.046 Sum_probs=50.5
Q ss_pred CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhc
Q 023800 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK 240 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~ 240 (277)
+|+.|+.-++....-.....+.|..+|+++.++...++++-.+...+.-.. ..+.+...+..|.|+-.||- ...
T Consensus 25 ~~~livtd~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~-~~~~~~~~~r~d~IIaiGGG-sv~---- 98 (345)
T cd08195 25 SKILIVTDENVAPLYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLY-DALLEAGLDRKSLIIALGGG-VVG---- 98 (345)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHH-HHHHHcCCCCCCeEEEECCh-HHH----
Confidence 577777765665533344667788888877766554331111110000000 00111111234888888874 233
Q ss_pred CHHHHHHHHHHHHcCCcEEEEchh
Q 023800 241 SKKLVNMLKKQKESNRPYGAICAS 264 (277)
Q Consensus 241 ~~~~~~~l~~~~~~~~~i~aiC~G 264 (277)
++..++...+.+|.++.+|.|-
T Consensus 99 --D~ak~vA~~~~rgip~i~VPTT 120 (345)
T cd08195 99 --DLAGFVAATYMRGIDFIQIPTT 120 (345)
T ss_pred --hHHHHHHHHHhcCCCeEEcchh
Confidence 2335665567788999888874
No 371
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=29.37 E-value=1.6e+02 Score=22.73 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=28.8
Q ss_pred CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeC
Q 023800 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVA 196 (277)
Q Consensus 160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~ 196 (277)
..++.|++.||....+.......++..|.++..++..
T Consensus 103 ~~~~iiliTDG~~~~~~~~~~~~l~~~gv~i~~ig~g 139 (164)
T cd01472 103 VPKVLVVITDGKSQDDVEEPAVELKQAGIEVFAVGVK 139 (164)
T ss_pred CCEEEEEEcCCCCCchHHHHHHHHHHCCCEEEEEECC
Confidence 3689999999987666666777788888888877664
No 372
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=28.72 E-value=2e+02 Score=22.87 Aligned_cols=95 Identities=12% Similarity=0.026 Sum_probs=53.5
Q ss_pred CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhc
Q 023800 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK 240 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~ 240 (277)
.+|.++- -.+..+....+.|++..-.+.+++...+ +. -.-..+..++.++....|+|+|.=|.+ .
T Consensus 49 ~~ifllG---~~~~~~~~~~~~l~~~yP~l~ivg~~~g-~f-----~~~~~~~i~~~I~~~~pdiv~vglG~P--k---- 113 (172)
T PF03808_consen 49 KRIFLLG---GSEEVLEKAAANLRRRYPGLRIVGYHHG-YF-----DEEEEEAIINRINASGPDIVFVGLGAP--K---- 113 (172)
T ss_pred CeEEEEe---CCHHHHHHHHHHHHHHCCCeEEEEecCC-CC-----ChhhHHHHHHHHHHcCCCEEEEECCCC--H----
Confidence 4565553 3445555667777776557777765543 22 011122334555567889999976642 2
Q ss_pred CHHHHHHHHHHHHcCCcEEEEchhhHHhhhhCCC
Q 023800 241 SKKLVNMLKKQKESNRPYGAICASPALVLEPHGL 274 (277)
Q Consensus 241 ~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~aGl 274 (277)
. ..|+.+..++...-..+|.|.+ +=--+|-
T Consensus 114 Q---E~~~~~~~~~l~~~v~i~vG~~-~d~~aG~ 143 (172)
T PF03808_consen 114 Q---ERWIARHRQRLPAGVIIGVGGA-FDFLAGK 143 (172)
T ss_pred H---HHHHHHHHHHCCCCEEEEECch-hhhhccC
Confidence 1 1466665555444477777777 5544554
No 373
>PRK06186 hypothetical protein; Validated
Probab=28.63 E-value=82 Score=26.67 Aligned_cols=33 Identities=9% Similarity=0.134 Sum_probs=27.2
Q ss_pred CCccchhccccChHHHHHHHHHHhCCCEEEEEchhHH
Q 023800 49 CGMPGATNLKESEVLESIVKKQASDGRLYAAICVFLA 85 (277)
Q Consensus 49 gG~~~~~~~~~~~~~~~~l~~~~~~g~~i~aiC~g~~ 85 (277)
||+ |. +.-+--+..++...++++|+.+||-|..
T Consensus 61 gGf-g~---rg~~Gki~ai~~Are~~iP~LGIClGmQ 93 (229)
T PRK06186 61 PGS-PY---RNDDGALTAIRFARENGIPFLGTCGGFQ 93 (229)
T ss_pred CCC-Cc---ccHhHHHHHHHHHHHcCCCeEeechhhH
Confidence 665 32 4556778889999999999999999988
No 374
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=28.44 E-value=2.7e+02 Score=21.93 Aligned_cols=81 Identities=22% Similarity=0.198 Sum_probs=50.3
Q ss_pred cCCCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHH
Q 023800 157 FDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ 236 (277)
Q Consensus 157 ~~~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~ 236 (277)
+.+.++|.++- -|.+..-.......|...|..+...... ..... ..-|++|+....
T Consensus 27 l~~a~~I~i~G-~G~S~~~A~~~~~~l~~~g~~~~~~~~~-----------------~~~~~--~~~Dv~I~iS~s---- 82 (179)
T TIGR03127 27 IIKAKRIFVAG-AGRSGLVGKAFAMRLMHLGFNVYVVGET-----------------TTPSI--KKGDLLIAISGS---- 82 (179)
T ss_pred HHhCCEEEEEe-cCHHHHHHHHHHHHHHhCCCeEEEeCCc-----------------ccCCC--CCCCEEEEEeCC----
Confidence 33456666554 4455444445555666667766655321 01122 235788877632
Q ss_pred hhhcCHHHHHHHHHHHHcCCcEEEEch
Q 023800 237 AFAKSKKLVNMLKKQKESNRPYGAICA 263 (277)
Q Consensus 237 ~~~~~~~~~~~l~~~~~~~~~i~aiC~ 263 (277)
...+++.+.++.+.++|.++.+|+.
T Consensus 83 --G~t~~~i~~~~~ak~~g~~ii~IT~ 107 (179)
T TIGR03127 83 --GETESLVTVAKKAKEIGATVAAITT 107 (179)
T ss_pred --CCcHHHHHHHHHHHHCCCeEEEEEC
Confidence 2567889999999999999999986
No 375
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=28.23 E-value=88 Score=24.79 Aligned_cols=40 Identities=25% Similarity=0.241 Sum_probs=27.9
Q ss_pred cCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchh
Q 023800 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICAS 264 (277)
Q Consensus 220 ~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G 264 (277)
.++||+|++..+. +.-..++.+.+||++.. +|.|+-++|.
T Consensus 37 ~~~yD~i~lG~w~---d~G~~d~~~~~fl~~l~--~KkV~lF~T~ 76 (160)
T PF12641_consen 37 LEDYDLIFLGFWI---DKGTPDKDMKEFLKKLK--GKKVALFGTA 76 (160)
T ss_pred CCCCCEEEEEcCc---cCCCCCHHHHHHHHHcc--CCeEEEEEec
Confidence 3679999996542 33456889999999864 5666666554
No 376
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=28.04 E-value=51 Score=25.96 Aligned_cols=50 Identities=28% Similarity=0.280 Sum_probs=31.1
Q ss_pred CCCEEEEEchh---HHHHHHHcCCC-----CCCC------CCCeEcCCCCCCHHHHHHHHHHHhcChhH
Q 023800 73 DGRLYAAICVF---LAVALGSWGLL-----KGLK------DGKVVTTRGPGTPMEFVVALVEQLYGKGK 127 (277)
Q Consensus 73 ~g~~i~aiC~g---~~~~La~aGll-----~g~~------dg~~iT~~g~~~~~~~a~~li~~l~g~~~ 127 (277)
+.+.|++++-| +. +|+-+.|+ +.|+ ||++||+--..- |..+ -..|.|++.
T Consensus 47 nknIVIGvVVGVGg~i-ll~il~lvf~~c~r~kktdfidSdGkvvtay~~n~---~~~~-w~~l~Gk~~ 110 (154)
T PF04478_consen 47 NKNIVIGVVVGVGGPI-LLGILALVFIFCIRRKKTDFIDSDGKVVTAYRSNK---LTKW-WYSLLGKKI 110 (154)
T ss_pred CccEEEEEEecccHHH-HHHHHHhheeEEEecccCccccCCCcEEEEEcCch---HHHH-HHHHhCCcc
Confidence 34578888876 54 56666654 3444 999999976652 3333 344566653
No 377
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=27.93 E-value=1.8e+02 Score=24.80 Aligned_cols=83 Identities=14% Similarity=0.094 Sum_probs=47.4
Q ss_pred EEEEecC---CCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhh
Q 023800 163 ILVPIAN---GSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFA 239 (277)
Q Consensus 163 V~ill~~---g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~ 239 (277)
|++++.+ .|+..-+.+..+.++..|+++.+...... +-. ....+.......+|.+++.+.. ..
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~--------~~~~i~~~~~~~vdgiii~~~~--~~--- 67 (288)
T cd01538 2 IGLSLPTKTEERWIRDRPNFEAALKELGAEVIVQNANGD-PAK--------QISQIENMIAKGVDVLVIAPVD--GE--- 67 (288)
T ss_pred eEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCC-HHH--------HHHHHHHHHHcCCCEEEEecCC--hh---
Confidence 6777653 34455556777888888999988765433 100 0112222223468988886532 11
Q ss_pred cCHHHHHHHHHHHHcCCcEEEEc
Q 023800 240 KSKKLVNMLKKQKESNRPYGAIC 262 (277)
Q Consensus 240 ~~~~~~~~l~~~~~~~~~i~aiC 262 (277)
...+++++..+.+.++..+-
T Consensus 68 ---~~~~~l~~l~~~~ipvV~~~ 87 (288)
T cd01538 68 ---ALASAVEKAADAGIPVIAYD 87 (288)
T ss_pred ---hHHHHHHHHHHCCCCEEEEC
Confidence 12345666666777777663
No 378
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=27.79 E-value=3.2e+02 Score=23.43 Aligned_cols=90 Identities=16% Similarity=0.131 Sum_probs=45.7
Q ss_pred CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEE-eCcchhhhccCCccEEEEcCCcchHHhhh
Q 023800 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLV-ADMLIDEAAKLSYDLIVLPGGLGGAQAFA 239 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~-~~~~~~~~~~~~~D~livpGG~~~~~~~~ 239 (277)
+++.++.-++....--....+.|+.+|+++.++......+ ... .......+...++|.++-.||-. ..
T Consensus 20 ~~~lvv~d~~t~~~~g~~v~~~l~~~g~~v~~~~~~~~~~-------~~~~~~~~~~~~~~~~~d~ii~vGgG~-i~--- 88 (250)
T PF13685_consen 20 KKVLVVTDENTYKAAGEKVEESLKSAGIEVAVIEEFVGDA-------DEDEVEKLVEALRPKDADLIIGVGGGT-II--- 88 (250)
T ss_dssp SEEEEEEETTHHHHHHHHHHHHHHTTT-EEEEEE-EE----------BHHHHHHHHTTS--TT--EEEEEESHH-HH---
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHHHcCCeEEEEecCCCCC-------CHHHHHHHHHHhcccCCCEEEEeCCcH-HH---
Confidence 5788887776655555667888999999998764221101 000 01112222235788888888742 22
Q ss_pred cCHHHHHHHHHHHHcCCcEEEEchhhH
Q 023800 240 KSKKLVNMLKKQKESNRPYGAICASPA 266 (277)
Q Consensus 240 ~~~~~~~~l~~~~~~~~~i~aiC~G~~ 266 (277)
++.+++ .++.+++..+++|.+.
T Consensus 89 ---D~~K~~--A~~~~~p~isVPTa~S 110 (250)
T PF13685_consen 89 ---DIAKYA--AFELGIPFISVPTAAS 110 (250)
T ss_dssp ---HHHHHH--HHHHT--EEEEES--S
T ss_pred ---HHHHHH--HHhcCCCEEEeccccc
Confidence 122233 3566899999998764
No 379
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=27.58 E-value=3.7e+02 Score=22.49 Aligned_cols=69 Identities=10% Similarity=0.070 Sum_probs=40.3
Q ss_pred HHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEc--CCcchHHhhhcCHHHHHHHHHHHHcC
Q 023800 178 IIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLP--GGLGGAQAFAKSKKLVNMLKKQKESN 255 (277)
Q Consensus 178 ~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livp--GG~~~~~~~~~~~~~~~~l~~~~~~~ 255 (277)
.+.+.|+..|++|++.+.+.. +..+++.....||+|+.= .+. .. -+++..+-++++.++|
T Consensus 27 ~~~~~L~~~gf~V~~~~~~d~-------------~~~~~~~~L~~~D~lV~~~~~~~---~~--l~~eq~~~l~~~V~~G 88 (215)
T cd03142 27 TIAAALAEYGFDVQTATLDEP-------------EHGLTEEVLAETDVLLWWGHIAH---DE--VKDEIVERVHRRVLDG 88 (215)
T ss_pred HHHHHHHhcCcEEEEEeccCc-------------cccCCHhHHhcCCEEEEeCCCCc---Cc--CCHHHHHHHHHHHHcC
Confidence 455678889999986654421 222333334679999872 221 11 2344555666677777
Q ss_pred CcEEEEchh
Q 023800 256 RPYGAICAS 264 (277)
Q Consensus 256 ~~i~aiC~G 264 (277)
.=++++=.|
T Consensus 89 gGlv~lHsg 97 (215)
T cd03142 89 MGLIVLHSG 97 (215)
T ss_pred CCEEEECCC
Confidence 766666544
No 380
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.57 E-value=1.8e+02 Score=24.30 Aligned_cols=34 Identities=6% Similarity=-0.126 Sum_probs=22.7
Q ss_pred eEEEEecC---CCchhhHHHHHHHHHhCCCeEEEEee
Q 023800 162 QILVPIAN---GSEEMEAVIIIDILRRAKANVVVASV 195 (277)
Q Consensus 162 kV~ill~~---g~~~~e~~~~~~~l~~a~~~v~~vs~ 195 (277)
||++++.+ .|...-..+..+.++..|+++.+...
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 37 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKELGVKVTFQGP 37 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 57888743 23333356667778888999888753
No 381
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=27.32 E-value=3.7e+02 Score=22.65 Aligned_cols=63 Identities=19% Similarity=0.178 Sum_probs=37.4
Q ss_pred CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCc
Q 023800 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGL 232 (277)
Q Consensus 160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~ 232 (277)
.++|.++..++-. -...+.|...|++++.+-.=. ..-................+|+|++..+.
T Consensus 123 ~~~vl~~~~~~~r----~~l~~~L~~~G~~v~~~~~Y~------~~~~~~~~~~~~~~~~~~~~d~v~ftS~~ 185 (248)
T COG1587 123 GKRVLILRGNGGR----EVLEEKLEERGAEVREVEVYR------TEPPPLDEATLIELLKLGEVDAVVFTSSS 185 (248)
T ss_pred CCeEEEEcCCCch----HHHHHHHHhCCCEEEEEeeee------ecCCCccHHHHHHHHHhCCCCEEEEeCHH
Confidence 4799999988766 355678888898877763211 11011111111222334679999998764
No 382
>cd00587 HCP_like The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-beta rossman fold domain. HCP, formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. Acetyl-CoA synthase (ACS), is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide and CoA.
Probab=26.36 E-value=4.3e+02 Score=22.86 Aligned_cols=38 Identities=26% Similarity=0.273 Sum_probs=33.0
Q ss_pred ccChHHHHHHHHHHhCCCEEEEEchhHHHHHHHcCCCCC
Q 023800 58 KESEVLESIVKKQASDGRLYAAICVFLAVALGSWGLLKG 96 (277)
Q Consensus 58 ~~~~~~~~~l~~~~~~g~~i~aiC~g~~~~La~aGll~g 96 (277)
..++...++.+++.+++.+|.+...+.+ -|+++|+.++
T Consensus 108 ~~~~~~~~iakeL~k~d~LVlt~GC~a~-~l~k~gl~~~ 145 (258)
T cd00587 108 KQDKAYADIAKELMKRGVMVLATGCAAE-ALLKLGLEDG 145 (258)
T ss_pred ccchHHHHHHHHHHhCCEEEEecchHHH-HHHhcCCccc
Confidence 4567889999999999999999977888 8999998876
No 383
>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Probab=26.03 E-value=43 Score=21.92 Aligned_cols=14 Identities=43% Similarity=0.695 Sum_probs=11.7
Q ss_pred hCCCEEEEEchhHH
Q 023800 72 SDGRLYAAICVFLA 85 (277)
Q Consensus 72 ~~g~~i~aiC~g~~ 85 (277)
++++.++++|.|-.
T Consensus 8 ~~~~~i~GVcaGlA 21 (61)
T PF04024_consen 8 RDDRVIAGVCAGLA 21 (61)
T ss_pred CCCCEEeeeHHHHH
Confidence 45899999999965
No 384
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=25.95 E-value=1.7e+02 Score=21.93 Aligned_cols=106 Identities=15% Similarity=0.130 Sum_probs=58.5
Q ss_pred CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcc---cCcEEEeC-------cchhhhc-cCCccEEEEc
Q 023800 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILAS---CQVKLVAD-------MLIDEAA-KLSYDLIVLP 229 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~---~g~~i~~~-------~~~~~~~-~~~~D~livp 229 (277)
|||.+.+.-..........+..|++.|+++.++-.+....+.+. .+-.+..+ .....+. ...+|+++|+
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~D~~vVa 80 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRAGWEVRVVLSPSAERFVTPEGLTGEPVYTDWDTWDRGDPAEHIELSRWADAMVVA 80 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTTTSEEEEEESHHHHHHSHHHGHCCSCEECTHCTCSTTTTTCHHHHHHTESEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhCCCEEEEEECCcHHHHhhhhccccchhhhccccCCCCCCcCcccccccCCEEEEc
Confidence 57888888777788888999999999999987643322122221 12333333 1111111 1458999886
Q ss_pred CCcch-HHhh---hcCHHHHHHHHHHHHcCCc-EEEEchhhH
Q 023800 230 GGLGG-AQAF---AKSKKLVNMLKKQKESNRP-YGAICASPA 266 (277)
Q Consensus 230 GG~~~-~~~~---~~~~~~~~~l~~~~~~~~~-i~aiC~G~~ 266 (277)
--..+ .-.+ ..+.-+...+......+++ |.+.+.-+.
T Consensus 81 PaT~NtlaKiA~GiaD~l~~~~~~~~l~~~~pvvi~P~mn~~ 122 (129)
T PF02441_consen 81 PATANTLAKIANGIADNLLTRVALAALKEGKPVVIAPAMNPA 122 (129)
T ss_dssp EEEHHHHHHHHTT--SSHHHHHHHHHHHTTCGEEEEEEESHH
T ss_pred ccCHHHHHHHHhCCcchHHHHHHHHHccCCCCeEEEEeCCHH
Confidence 42111 1111 2244666677777776666 666665554
No 385
>PRK14817 NADH dehydrogenase subunit B; Provisional
Probab=25.80 E-value=1e+02 Score=25.03 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=28.7
Q ss_pred cCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEch
Q 023800 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICA 263 (277)
Q Consensus 220 ~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~ 263 (277)
+.++|+++|-|... ....+.++.+.++..+-|.|.|+++
T Consensus 73 PR~ADillVeG~VT-----~~m~~~l~~~~e~~p~pK~VIAvGa 111 (181)
T PRK14817 73 PRQADLLMVVGTVN-----CKQAPILQRVYEQMADPKWVMAFGV 111 (181)
T ss_pred CcceeEEEEEecCC-----ccchHHHHHHHHHcccCCEEEEecc
Confidence 45689999998642 2345667788888888899988843
No 386
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=25.38 E-value=1.6e+02 Score=26.22 Aligned_cols=90 Identities=14% Similarity=0.228 Sum_probs=50.8
Q ss_pred EEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHH-----h
Q 023800 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ-----A 237 (277)
Q Consensus 163 V~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~-----~ 237 (277)
+.|+..|.+.+.-++.++.-+-.| .+. +.+ .+ +......+++-.-..|.|+|.||..+.. .
T Consensus 30 ~VIlvsDn~aD~~lA~~iaellNA--~Vl-ttp-wg----------~ynes~~~eI~~lnpd~VLIIGGp~AVs~~yE~~ 95 (337)
T COG2247 30 VVILVSDNEADLLLALPIAELLNA--PVL-TTP-WG----------IYNESVLDEIIELNPDLVLIIGGPIAVSPNYENA 95 (337)
T ss_pred EEEEecchHHHHHHhhHHHHHhCC--eeE-ecC-cc----------cccHHHHHHHHhhCCceEEEECCCCcCChhHHHH
Confidence 888888888887777776655443 333 322 12 1112222333233568888888854211 0
Q ss_pred h----------------hcCHHHHHHHHHHHHcCC--cEEEEchhhH
Q 023800 238 F----------------AKSKKLVNMLKKQKESNR--PYGAICASPA 266 (277)
Q Consensus 238 ~----------------~~~~~~~~~l~~~~~~~~--~i~aiC~G~~ 266 (277)
+ .....+..++++.|+++- ....+|+|=-
T Consensus 96 Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~GwD 142 (337)
T COG2247 96 LKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVYGWD 142 (337)
T ss_pred HHhCCcEEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEeccc
Confidence 1 113466777776666533 4788888854
No 387
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=25.31 E-value=87 Score=25.73 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=22.2
Q ss_pred HHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800 63 LESIVKKQASDGRLYAAICVFLAVALGSW 91 (277)
Q Consensus 63 ~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (277)
+.+.|++.+++|.++++.|.|+. ++...
T Consensus 103 ~~~~i~~~~~~G~v~~G~SAGA~-~~~~~ 130 (210)
T cd03129 103 LLDAILKRVARGVVIGGTSAGAA-VMGET 130 (210)
T ss_pred hHHHHHHHHHcCCeEEEcCHHHH-Hhhhc
Confidence 44445555669999999999998 88876
No 388
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=25.20 E-value=4.3e+02 Score=22.56 Aligned_cols=88 Identities=13% Similarity=0.211 Sum_probs=47.5
Q ss_pred EEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCH
Q 023800 163 ILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSK 242 (277)
Q Consensus 163 V~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~ 242 (277)
.=||+++.-....+...++.|+..|.+-. ++.... .. ....+.+... .+--+-+|.|.. +. ...-.
T Consensus 92 ~rfLi~~~P~~~~~~~yl~eLk~~gV~~l-VrlcE~-~Y---------d~~~~~~~GI-~~~~lpipDg~a-Ps-~~~i~ 157 (241)
T PTZ00393 92 IKILILDAPTNDLLPLYIKEMKNYNVTDL-VRTCER-TY---------NDGEITSAGI-NVHELIFPDGDA-PT-VDIVS 157 (241)
T ss_pred eeEEEeCCCCHHHHHHHHHHHHHcCCCEE-EECCCC-CC---------CHHHHHHcCC-eEEEeecCCCCC-CC-HHHHH
Confidence 34555665566566677789999987542 222211 00 0011121111 112245555532 21 22335
Q ss_pred HHHHHHHHHHHcCCcEEEEchh
Q 023800 243 KLVNMLKKQKESNRPYGAICAS 264 (277)
Q Consensus 243 ~~~~~l~~~~~~~~~i~aiC~G 264 (277)
+..+++.+..++|+.|+-.|.+
T Consensus 158 ~~l~~i~~~l~~g~~VaVHC~A 179 (241)
T PTZ00393 158 NWLTIVNNVIKNNRAVAVHCVA 179 (241)
T ss_pred HHHHHHHHHHhcCCeEEEECCC
Confidence 6777777777899999999976
No 389
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=24.97 E-value=1.1e+02 Score=25.01 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=26.9
Q ss_pred cCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEch
Q 023800 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICA 263 (277)
Q Consensus 220 ~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~ 263 (277)
+.++|+++|-|... ....+.+..+.++..+-|.|.|+++
T Consensus 72 Pr~aDvllV~G~vt-----~~~~~~l~~~~e~mp~pk~VIA~Ga 110 (183)
T PRK06411 72 PRQADLMIVAGTLT-----NKMAPALRRLYDQMPEPKWVISMGS 110 (183)
T ss_pred CCceeEEEEEeCCC-----ccchHHHHHHHHHcCcCCeEEEEec
Confidence 45689999999752 1245566666667777888888743
No 390
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=24.89 E-value=2e+02 Score=24.85 Aligned_cols=39 Identities=10% Similarity=0.065 Sum_probs=28.6
Q ss_pred CCCeEEEEecC-----CCchhhHHHHHHHHHhCCCeEEEEeeCC
Q 023800 159 NSPQILVPIAN-----GSEEMEAVIIIDILRRAKANVVVASVAD 197 (277)
Q Consensus 159 ~~~kV~ill~~-----g~~~~e~~~~~~~l~~a~~~v~~vs~~~ 197 (277)
++++|+++.-. ..+..+.....++|++.|+++.++..+.
T Consensus 3 ~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~ 46 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGE 46 (304)
T ss_pred CCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCc
Confidence 45789977732 2344455788999999999999996553
No 391
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=24.79 E-value=2e+02 Score=23.44 Aligned_cols=38 Identities=8% Similarity=0.194 Sum_probs=29.5
Q ss_pred CCeEEEEecCCCch---hhHHHHHHHHHhCCCeEEEEeeCC
Q 023800 160 SPQILVPIANGSEE---MEAVIIIDILRRAKANVVVASVAD 197 (277)
Q Consensus 160 ~~kV~ill~~g~~~---~e~~~~~~~l~~a~~~v~~vs~~~ 197 (277)
.+||.|++.||... .+...+...++..|..+..++...
T Consensus 131 v~kvvIllTDg~~~~~~~~~~~~a~~l~~~GI~i~tVGiG~ 171 (193)
T cd01477 131 YKKVVIVFASDYNDEGSNDPRPIAARLKSTGIAIITVAFTQ 171 (193)
T ss_pred CCeEEEEEecCccCCCCCCHHHHHHHHHHCCCEEEEEEeCC
Confidence 36899999986432 346677888999999999998754
No 392
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=24.77 E-value=2.5e+02 Score=25.01 Aligned_cols=69 Identities=20% Similarity=0.287 Sum_probs=42.1
Q ss_pred hhHHHHHhhccccccc--CCCchhhcccC-ccccccCCCCeEEEEecCCC-----chhhHHHHHHHHHhCCC-eEEEEee
Q 023800 125 KGKADEVSGARVMRAN--HGDEFTIAEFN-PVQWTFDNSPQILVPIANGS-----EEMEAVIIIDILRRAKA-NVVVASV 195 (277)
Q Consensus 125 ~~~a~~v~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~kV~ill~~g~-----~~~e~~~~~~~l~~a~~-~v~~vs~ 195 (277)
++.++++++.+..+-. ...+|+..|.. +...++ ....|.| +.++. +.+|+....+++++++. ++..+-|
T Consensus 14 ~~La~~ia~~l~~~l~~~~~~rF~DGE~~V~i~EsV-rg~dVfI-~qs~~~pvnd~lmELLi~idA~k~asA~~It~ViP 91 (314)
T COG0462 14 PELAEKIAKRLGIPLGKVEVKRFPDGEIYVRIEESV-RGKDVFI-IQSTSPPVNDNLMELLIMIDALKRASAKRITAVIP 91 (314)
T ss_pred HHHHHHHHHHhCCCcccceeEEcCCCcEEEEecccc-cCCeEEE-EeCCCCCcCHHHHHHHHHHHHHHhcCCceEEEEee
Confidence 4567777776666543 34445555554 343333 3467774 44433 38999999999999975 4555443
No 393
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=24.54 E-value=3e+02 Score=24.27 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=29.7
Q ss_pred CCCeEEEEecC---CCchhhHHHHHHHHHhCCCeEEEEeeCC
Q 023800 159 NSPQILVPIAN---GSEEMEAVIIIDILRRAKANVVVASVAD 197 (277)
Q Consensus 159 ~~~kV~ill~~---g~~~~e~~~~~~~l~~a~~~v~~vs~~~ 197 (277)
+..+|++++.+ .|+..-+.+..+.++..||++.++....
T Consensus 24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g~~l~i~~~~~ 65 (330)
T PRK10355 24 KEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANG 65 (330)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHHHHHHcCCEEEEECCCC
Confidence 35789999863 4666667788888899999999886654
No 394
>COG2238 RPS19A Ribosomal protein S19E (S16A) [Translation, ribosomal structure and biogenesis]
Probab=24.26 E-value=93 Score=24.12 Aligned_cols=37 Identities=24% Similarity=0.348 Sum_probs=29.8
Q ss_pred HHHcCCCCCCCCCCeEcCCCCCCHHHHHHHHHHHhcC
Q 023800 88 LGSWGLLKGLKDGKVVTTRGPGTPMEFVVALVEQLYG 124 (277)
Q Consensus 88 La~aGll~g~~dg~~iT~~g~~~~~~~a~~li~~l~g 124 (277)
|-++|+++-...|+.+|..|-+-.-..|..+++.+..
T Consensus 105 LE~~G~V~k~~~GR~ltp~GrsllD~~a~ei~eel~~ 141 (147)
T COG2238 105 LEKAGLVEKTPKGRVLTPKGRSLLDRIATEIKEELEE 141 (147)
T ss_pred HHHCCceeecCCCceeCccchhHHHHHHHHHHHHhcc
Confidence 6778988877789999999988766777777777654
No 395
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=24.00 E-value=5.5e+02 Score=23.31 Aligned_cols=95 Identities=12% Similarity=0.044 Sum_probs=53.9
Q ss_pred CeEEEEecCCCchhhHHHHHHHHHhCCCe-EEEEeeCCCceEE-cccCcEEEeCcchhhhccCCccEEEEcCCcchHHhh
Q 023800 161 PQILVPIANGSEEMEAVIIIDILRRAKAN-VVVASVADKLEIL-ASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAF 238 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~-v~~vs~~~~~~v~-~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~ 238 (277)
.+++++..+.....|.......++..|.. +..-......... ...+. -....+++++ ++.|.+++.|... .
T Consensus 88 ~~i~~i~g~~~t~E~~~~lkkl~~~lgs~n~d~~~~~~~~~~~~~~~~~-~~~~~sl~di--e~ad~illiG~n~--~-- 160 (366)
T cd02774 88 SKLNFIIGSKIDLETLFYYKKLLNKLGSLNTNSNNFLENNNYFNLDLEN-YLFNNSLKNL--DKSDLCLLIGSNL--R-- 160 (366)
T ss_pred ccEEEEECCCCCHHHHHHHHHHHHHhCCCceeccccccccccccccccC-CccCCCHHHH--hhCCEEEEEcCCc--c--
Confidence 36899999987777777777776654432 1111000000000 00011 1123467776 4689999998642 2
Q ss_pred hcCHHHHHHHHHHHHc-CCcEEEEc
Q 023800 239 AKSKKLVNMLKKQKES-NRPYGAIC 262 (277)
Q Consensus 239 ~~~~~~~~~l~~~~~~-~~~i~aiC 262 (277)
.+.|-+-..||+..++ +..|..|.
T Consensus 161 ~e~Pvl~~rlrka~~~~~~ki~vi~ 185 (366)
T cd02774 161 VESPILNIRLRNRYNKGNKKIFVIG 185 (366)
T ss_pred hhhHHHHHHHHHHHHcCCCEEEEeC
Confidence 3567778888887755 56676664
No 396
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=23.93 E-value=1.6e+02 Score=21.57 Aligned_cols=37 Identities=16% Similarity=0.127 Sum_probs=28.3
Q ss_pred CccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchh
Q 023800 222 SYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICAS 264 (277)
Q Consensus 222 ~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G 264 (277)
+-|++|+..-. ...+++.+.++.+.++|.++.+|+..
T Consensus 46 ~~d~~I~iS~s------G~t~e~~~~~~~a~~~g~~vi~iT~~ 82 (126)
T cd05008 46 EDTLVIAISQS------GETADTLAALRLAKEKGAKTVAITNV 82 (126)
T ss_pred CCcEEEEEeCC------cCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 34777776532 24668899999999999999999874
No 397
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=23.78 E-value=2.8e+02 Score=24.77 Aligned_cols=96 Identities=15% Similarity=0.090 Sum_probs=46.7
Q ss_pred CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhc
Q 023800 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAK 240 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~ 240 (277)
+|+.|+.-++....-.-...+.|+..|.++.++-..++++-.+...+.-. -..+.+...+..|.|+-.||-. ..
T Consensus 21 ~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~-~~~~~~~~~~r~d~IIavGGGs-v~---- 94 (344)
T TIGR01357 21 SKLVIITDETVADLYADKLLEALQALGYNVLKLTVPDGEESKSLETVQRL-YDQLLEAGLDRSSTIIALGGGV-VG---- 94 (344)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHHHH-HHHHHHcCCCCCCEEEEEcChH-HH----
Confidence 57777765555444333455677888877654333332111110000000 0001111123358888777742 22
Q ss_pred CHHHHHHHHHHHHcCCcEEEEchh
Q 023800 241 SKKLVNMLKKQKESNRPYGAICAS 264 (277)
Q Consensus 241 ~~~~~~~l~~~~~~~~~i~aiC~G 264 (277)
++..++...+.++.++.+|.|-
T Consensus 95 --D~aK~iA~~~~~~~p~i~VPTT 116 (344)
T TIGR01357 95 --DLAGFVAATYMRGIRFIQVPTT 116 (344)
T ss_pred --HHHHHHHHHHccCCCEEEecCc
Confidence 2224444445678899988873
No 398
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=23.34 E-value=4.5e+02 Score=24.94 Aligned_cols=93 Identities=15% Similarity=0.120 Sum_probs=61.8
Q ss_pred EcCCCCCCHHHHHHHHHHHhcChhHHHHHhhcccccccCCCchhhcccCc--cc--------cccCCCCeEEEEecCCCc
Q 023800 103 VTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNP--VQ--------WTFDNSPQILVPIANGSE 172 (277)
Q Consensus 103 iT~~g~~~~~~~a~~li~~l~g~~~a~~v~~~~~~~~~~~~~~~~~~~~~--~~--------~~~~~~~kV~ill~~g~~ 172 (277)
+|-++-.....-+++.-...+|+..-+++...+.---.+...+....... .. .++ ..+||.+.+.-+..
T Consensus 4 ~~ir~~~~~~~~~l~~~a~~~g~s~e~e~r~il~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l-~~k~IllgVtGsIA 82 (475)
T PRK13982 4 LTIRKLDDAIKAELRQRAAQNGRSMEEEVRVILRDATTPRHGPAASSAAPVSAAAPPAAREQASL-ASKRVTLIIGGGIA 82 (475)
T ss_pred eeeCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCCCccccCcccccCCCccccccc-CCCEEEEEEccHHH
Confidence 45556666677788888888999888888776655422221111111111 00 011 25789999888888
Q ss_pred hhhHHHHHHHHHhCCCeEEEEeeC
Q 023800 173 EMEAVIIIDILRRAKANVVVASVA 196 (277)
Q Consensus 173 ~~e~~~~~~~l~~a~~~v~~vs~~ 196 (277)
.......+..|++.|++|+++-..
T Consensus 83 ayka~~lvr~L~k~G~~V~VvmT~ 106 (475)
T PRK13982 83 AYKALDLIRRLKERGAHVRCVLTK 106 (475)
T ss_pred HHHHHHHHHHHHhCcCEEEEEECc
Confidence 889999999999999999887554
No 399
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=23.31 E-value=2.4e+02 Score=22.94 Aligned_cols=100 Identities=17% Similarity=0.149 Sum_probs=50.4
Q ss_pred eEEEEecCCCchhh--HHHHHHHHHhC-CCeEEEEeeCCCc--eEEcc-cCc--EEEeCcchhhhccCCccEEEEcCCcc
Q 023800 162 QILVPIANGSEEME--AVIIIDILRRA-KANVVVASVADKL--EILAS-CQV--KLVADMLIDEAAKLSYDLIVLPGGLG 233 (277)
Q Consensus 162 kV~ill~~g~~~~e--~~~~~~~l~~a-~~~v~~vs~~~~~--~v~~~-~g~--~i~~~~~~~~~~~~~~D~livpGG~~ 233 (277)
||+|+.+...--++ .-.+.+-++.. |.+++++...... .+... ... ...+..+..++ .++|.|++.....
T Consensus 2 kilIiY~S~~G~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~aD~ii~GSPty 79 (197)
T TIGR01755 2 KVLVLYYSMYGHIETMARAVAEGAREVDGAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQEL--ADYDAIIFGTPTR 79 (197)
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHHHhcCCCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHH--HHCCEEEEEeccc
Confidence 67787776433333 23345566664 8888887653210 01000 000 00111122332 4689999865321
Q ss_pred hHHhhhcCHHHHHHHHHHH-------HcCCcEEEEchhhH
Q 023800 234 GAQAFAKSKKLVNMLKKQK-------ESNRPYGAICASPA 266 (277)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~~-------~~~~~i~aiC~G~~ 266 (277)
.-...+.+..|+.+.. -.+|+.+.++++.+
T Consensus 80 ---~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~ 116 (197)
T TIGR01755 80 ---FGNMASQMRNFLDQTGGLWASGALVGKVGSVFTSTGT 116 (197)
T ss_pred ---ccCccHHHHHHHHhccccccccccCCCEEEEEEECCC
Confidence 1123345566665542 13799888888654
No 400
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=22.96 E-value=1.8e+02 Score=26.62 Aligned_cols=106 Identities=8% Similarity=-0.012 Sum_probs=58.4
Q ss_pred HHHHHHHHhcChhHHHHHhhcccccccCCCchhhcccCccccccCCCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEE
Q 023800 114 FVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDILRRAKANVVVA 193 (277)
Q Consensus 114 ~a~~li~~l~g~~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~v 193 (277)
++.+++.++.|...++-+ ....+...-|+.... ..++ ...+.||+++--||.=..=......+|...++++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~-~~~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~ 74 (372)
T PLN00118 1 MAAQLLRRLLGNRLAQIL----GASSSSSGAFSSSAR-AFSS-SSTPITATLFPGDGIGPEIAESVKQVFTAAGVPIEWE 74 (372)
T ss_pred ChHHHHHHHhcccchhhh----ccccccCCCCcHHHH-hhcc-CCCCeEEEEECCCcccHHHHHHHHHHHHhcCCCeEEE
Confidence 356788888887666544 332222222221110 1111 1234689999888865555667778887777655554
Q ss_pred eeC-CCceEEcccCcEEEeCcchhhhccCCccEEEEc
Q 023800 194 SVA-DKLEILASCQVKLVADMLIDEAAKLSYDLIVLP 229 (277)
Q Consensus 194 s~~-~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livp 229 (277)
... |. ......|-. .|+.+++.+ ..+|+++..
T Consensus 75 ~~~~G~-~~~~~~G~~-lp~~~l~~~--~~~da~L~G 107 (372)
T PLN00118 75 EHYVGT-TVDPRTGSF-LTWESLESV--RRNKVGLKG 107 (372)
T ss_pred EEeCcH-HHHHhcCCc-CCHHHHHHH--HHCCEEEEC
Confidence 443 33 333344533 356666665 367888773
No 401
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=22.81 E-value=4.2e+02 Score=23.96 Aligned_cols=198 Identities=13% Similarity=0.104 Sum_probs=112.0
Q ss_pred cChHHHHHHHHHHhCCCEEEE--------E-chhHHHHHHHcCCCCCCC--------------------CCCeE---cCC
Q 023800 59 ESEVLESIVKKQASDGRLYAA--------I-CVFLAVALGSWGLLKGLK--------------------DGKVV---TTR 106 (277)
Q Consensus 59 ~~~~~~~~l~~~~~~g~~i~a--------i-C~g~~~~La~aGll~g~~--------------------dg~~i---T~~ 106 (277)
+|.--.+++....++|++.=+ - -+|. .||-.+-++|.+ -+.+| ++.
T Consensus 83 KdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGi--gLA~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~ 160 (362)
T KOG1252|consen 83 KDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGI--GLAYMAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAA 160 (362)
T ss_pred HHHHHHHHHHHHHHcCCccCCceEEEecCCCchHH--HHHHHHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChHH
Confidence 345556677777777765433 1 2344 488888899988 44444 455
Q ss_pred CCCC---HHHHHHHHHHHhcChhHHHHHhhcccccccCCCchhhcccCccccccCCCCeEEEEecCCCchhhHHHHHHHH
Q 023800 107 GPGT---PMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFNPVQWTFDNSPQILVPIANGSEEMEAVIIIDIL 183 (277)
Q Consensus 107 g~~~---~~~~a~~li~~l~g~~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kV~ill~~g~~~~e~~~~~~~l 183 (277)
|... +++-+..++.+.-+.-+.+|-.+ +.+..-||+.. ....=+. ...+|-++++.--..-.+++.-..+
T Consensus 161 ~~~~~e~ai~~a~~l~~~~pna~~l~Qf~n----p~Np~~hy~tt-g~EI~~q--~~g~vDi~V~gaGTGGTitgvGRyl 233 (362)
T KOG1252|consen 161 GMKGPESAIGKAEELLNKTPNAYILDQFHN----PGNPLAHYETT-GPEIWRQ--LDGKVDIFVAGAGTGGTITGVGRYL 233 (362)
T ss_pred ccCChHHHHHHHHHHHHhCCChHHHHHhcC----CCCcccccccc-cHHHHHH--hcCCCCEEEeccCCCceeechhHHH
Confidence 5554 77777777777766655555432 22222222211 1110000 1367888887755556667777888
Q ss_pred HhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcc--h--HHhhhcCHHHHHHHHHHHHcCCcEE
Q 023800 184 RRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLG--G--AQAFAKSKKLVNMLKKQKESNRPYG 259 (277)
Q Consensus 184 ~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~--~--~~~~~~~~~~~~~l~~~~~~~~~i~ 259 (277)
++.|-.++++..+....+.-+.+..=...+.+.. -.|| ++|+-.. . .+..-.+++....-|+...+-..++
T Consensus 234 ke~~~~~kVv~vdp~~S~~~~~~~~g~~~~~I~G---IGyg--~~p~~ld~~~vd~~~~~~~d~A~~~Ar~La~eeGll~ 308 (362)
T KOG1252|consen 234 KEQNPNIKVVGVDPQESIVLSGGKPGPTFHKIQG---IGYG--FIPTTLDTKLVDEVLKVSSDEAIEMARRLALEEGLLV 308 (362)
T ss_pred HHhCCCCEEEEeCCCcceeccCCCCCCCccceec---cccC--cCccccchHHHHHHHHhCCHHHHHHHHHHHHhhCeee
Confidence 8888888888777542222221111001122222 3455 6665321 0 1111335567777788888888899
Q ss_pred EEchhhHHhhhh
Q 023800 260 AICASPALVLEP 271 (277)
Q Consensus 260 aiC~G~~~lLa~ 271 (277)
++.+|+. ++|.
T Consensus 309 G~SSGan-~~aA 319 (362)
T KOG1252|consen 309 GISSGAN-VAAA 319 (362)
T ss_pred cccchHH-HHHH
Confidence 9999998 7775
No 402
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.77 E-value=1.3e+02 Score=26.01 Aligned_cols=37 Identities=16% Similarity=0.097 Sum_probs=27.1
Q ss_pred CCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEchhhH
Q 023800 221 LSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICASPA 266 (277)
Q Consensus 221 ~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~ 266 (277)
+++|++++-||.+ -+++.++.+...+.+|.+|-.|..
T Consensus 32 ~~~D~vi~iGGDG---------T~L~a~~~~~~~~iPilGIN~G~l 68 (259)
T PRK00561 32 DGADYLFVLGGDG---------FFVSTAANYNCAGCKVVGINTGHL 68 (259)
T ss_pred CCCCEEEEECCcH---------HHHHHHHHhcCCCCcEEEEecCCC
Confidence 3579999999964 334566666677889999888764
No 403
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=22.77 E-value=4.6e+02 Score=23.70 Aligned_cols=92 Identities=21% Similarity=0.174 Sum_probs=46.8
Q ss_pred CeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCcc---EEEEcCCcchHHh
Q 023800 161 PQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYD---LIVLPGGLGGAQA 237 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D---~livpGG~~~~~~ 237 (277)
+|+.++.-++....-.-...+.|+.+|+++.++...++++-.+...+ +..++.....++| .|+-.||-. ..
T Consensus 24 ~rvlvVtd~~v~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v----~~~~~~~~~~~~dr~~~IIAvGGGs-v~- 97 (355)
T cd08197 24 DKYLLVTDSNVEDLYGHRLLEYLREAGAPVELLSVPSGEEHKTLSTL----SDLVERALALGATRRSVIVALGGGV-VG- 97 (355)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHH----HHHHHHHHHcCCCCCcEEEEECCcH-HH-
Confidence 46776665555544334567888888887765544332111110000 0111111112344 777666632 22
Q ss_pred hhcCHHHHHHHHHHHHcCCcEEEEch
Q 023800 238 FAKSKKLVNMLKKQKESNRPYGAICA 263 (277)
Q Consensus 238 ~~~~~~~~~~l~~~~~~~~~i~aiC~ 263 (277)
++..++...+.++.++..|.|
T Consensus 98 -----D~ak~~A~~~~rgip~I~IPT 118 (355)
T cd08197 98 -----NIAGLLAALLFRGIRLVHIPT 118 (355)
T ss_pred -----HHHHHHHHHhccCCCEEEecC
Confidence 223444445567889999988
No 404
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=22.67 E-value=2.7e+02 Score=22.10 Aligned_cols=38 Identities=18% Similarity=0.138 Sum_probs=28.4
Q ss_pred CeEEEEecCCCchhhHHHHHHHHHhCC--CeEEEEeeCCC
Q 023800 161 PQILVPIANGSEEMEAVIIIDILRRAK--ANVVVASVADK 198 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~~~~~~~l~~a~--~~v~~vs~~~~ 198 (277)
.+|+|++-...+..-.....+.|...| |+++++|....
T Consensus 3 ~~V~IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRT 42 (162)
T COG0041 3 PKVGIIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRT 42 (162)
T ss_pred ceEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEEeccCC
Confidence 379999877655555677888888887 68888887764
No 405
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.35 E-value=2.9e+02 Score=23.01 Aligned_cols=85 Identities=15% Similarity=0.002 Sum_probs=46.8
Q ss_pred eEEEEecC----CCchhhHHHHHHHHHhCCCeEEEEeeCC-CceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHH
Q 023800 162 QILVPIAN----GSEEMEAVIIIDILRRAKANVVVASVAD-KLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQ 236 (277)
Q Consensus 162 kV~ill~~----g~~~~e~~~~~~~l~~a~~~v~~vs~~~-~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~ 236 (277)
||++++.+ .|...-..+..+.++..|+++.+...+. . + .. . ...++.......|++++.+..
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~~g~~v~~~~~~~~~-~-~~------~-~~~i~~l~~~~vdgiii~~~~---- 67 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKDLGVDVEYRGPETFD-V-AD------M-ARLIEAAIAAKPDGIVVTIPD---- 67 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHHhCCEEEEECCCCCC-H-HH------H-HHHHHHHHHhCCCEEEEeCCC----
Confidence 46666643 2333444567777788899998876544 2 1 00 0 011222222468988886532
Q ss_pred hhhcCHHHHHHHHHHHHcCCcEEEEch
Q 023800 237 AFAKSKKLVNMLKKQKESNRPYGAICA 263 (277)
Q Consensus 237 ~~~~~~~~~~~l~~~~~~~~~i~aiC~ 263 (277)
...+.+.++...+++.++..+..
T Consensus 68 ----~~~~~~~l~~~~~~~ipvV~~~~ 90 (271)
T cd06312 68 ----PDALDPAIKRAVAAGIPVISFNA 90 (271)
T ss_pred ----hHHhHHHHHHHHHCCCeEEEeCC
Confidence 11223456666667778877753
No 406
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=22.28 E-value=4.3e+02 Score=22.92 Aligned_cols=58 Identities=9% Similarity=-0.070 Sum_probs=32.7
Q ss_pred HHHhhcccccccCCCchhhcccCccccccCCCCeEEEEecC---CCchhhHHHHHHHHHhCCCeEEEEee
Q 023800 129 DEVSGARVMRANHGDEFTIAEFNPVQWTFDNSPQILVPIAN---GSEEMEAVIIIDILRRAKANVVVASV 195 (277)
Q Consensus 129 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kV~ill~~---g~~~~e~~~~~~~l~~a~~~v~~vs~ 195 (277)
.++++.+.|.++...+ .+ .-.+++.|++++.+ .|...=+.+..+.+...|+.+.++..
T Consensus 42 ~~~a~elgY~p~~~a~-------~l--~~~~~~~Igvv~~~~~~~~~~~i~~gi~~~a~~~g~~~~~~~~ 102 (342)
T PRK10014 42 NQAIEELGFVRNRQAS-------AL--RGGQSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLLQG 102 (342)
T ss_pred HHHHHHhCCCcCHHHH-------hh--ccCCCCEEEEEeCCCccchHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 3446667776554321 01 11244678888753 23333345667778888998877644
No 407
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=22.24 E-value=3.3e+02 Score=20.10 Aligned_cols=72 Identities=21% Similarity=0.251 Sum_probs=39.4
Q ss_pred HHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHhhhcCHHHHHHHHHHH---H
Q 023800 177 VIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQK---E 253 (277)
Q Consensus 177 ~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~---~ 253 (277)
-...+.+...|.++++...+.- ...++ .++|.|++..........+ .+.+..|+.+.. -
T Consensus 17 ~~i~~~~~~~g~~v~~~~~~~~---------------~~~~l--~~~d~iilgspty~~g~~p-~~~~~~f~~~l~~~~~ 78 (140)
T TIGR01753 17 NIIAEGLKEAGAEVDLLEVADA---------------DAEDL--LSYDAVLLGCSTWGDEDLE-QDDFEPFFEELEDIDL 78 (140)
T ss_pred HHHHHHHHhcCCeEEEEEcccC---------------CHHHH--hcCCEEEEEcCCCCCCCCC-cchHHHHHHHhhhCCC
Confidence 3455667777888877765421 12232 3588888865321111111 134555555443 3
Q ss_pred cCCcEEEEchhhH
Q 023800 254 SNRPYGAICASPA 266 (277)
Q Consensus 254 ~~~~i~aiC~G~~ 266 (277)
+++.++.+++|.+
T Consensus 79 ~gk~~~vfgt~g~ 91 (140)
T TIGR01753 79 GGKKVALFGSGDW 91 (140)
T ss_pred CCCEEEEEecCCC
Confidence 6888888888654
No 408
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=22.16 E-value=86 Score=31.53 Aligned_cols=27 Identities=15% Similarity=0.030 Sum_probs=20.0
Q ss_pred HHHHHHHHhC----CCEEEEEchhHHHHHHHc
Q 023800 64 ESIVKKQASD----GRLYAAICVFLAVALGSW 91 (277)
Q Consensus 64 ~~~l~~~~~~----g~~i~aiC~g~~~~La~a 91 (277)
..++++..+. +++|.+||.|.. +|+.+
T Consensus 72 ~~i~~~i~~~~~~~~iPvLGIClG~Q-lLa~a 102 (742)
T TIGR01823 72 MGIISELWELANLDEVPVLGICLGFQ-SLCLA 102 (742)
T ss_pred hHHHHHHHHhcccCCCcEEEEchhhH-HHHhh
Confidence 4445555543 599999999999 88886
No 409
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=22.03 E-value=3.5e+02 Score=24.27 Aligned_cols=163 Identities=12% Similarity=0.067 Sum_probs=78.7
Q ss_pred CCCCCCCCCeEcCCCCCCHHHHHHHHHHHhcChhHHHHHhhcccccccCCCchhhcccC-ccccccCCCCeEEEEec---
Q 023800 93 LLKGLKDGKVVTTRGPGTPMEFVVALVEQLYGKGKADEVSGARVMRANHGDEFTIAEFN-PVQWTFDNSPQILVPIA--- 168 (277)
Q Consensus 93 ll~g~~dg~~iT~~g~~~~~~~a~~li~~l~g~~~a~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~kV~ill~--- 168 (277)
||.++++=.++++ .+ ..+++..+.+.+. .+..+ ....+|+..|.. +...++ ..+.|.|+-.
T Consensus 15 ~~~~~~~~~i~~g--~~-~~~la~~ia~~lg-~~l~~----------~~~~~FpDGE~~v~i~~~v-rg~~V~ivqs~~~ 79 (330)
T PRK02812 15 LLSDNNRLRLFSG--SS-NPALAQEVARYLG-MDLGP----------MIRKRFADGELYVQIQESI-RGCDVYLIQPTCA 79 (330)
T ss_pred cccCCCCEEEEEC--CC-CHHHHHHHHHHhC-CCcee----------eEEEECCCCCEEEEeCCCC-CCCEEEEECCCCC
Confidence 4444433334443 33 4677777777653 22111 112234444433 233333 3467777665
Q ss_pred C-CCchhhHHHHHHHHHhCCC-eEEEEeeCCCc---eEEcccCcEEEeCcchhhhccCCccEEEEcCCcc---------h
Q 023800 169 N-GSEEMEAVIIIDILRRAKA-NVVVASVADKL---EILASCQVKLVADMLIDEAAKLSYDLIVLPGGLG---------G 234 (277)
Q Consensus 169 ~-g~~~~e~~~~~~~l~~a~~-~v~~vs~~~~~---~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~---------~ 234 (277)
| +-..+|+....+++++++. ++.+|-|=-.. --....|-.+.....-.-+....+|-|+.---+. +
T Consensus 80 p~nd~l~eLll~~~alr~~ga~ri~~ViPYl~YaRQDr~~~~~e~isak~vA~lL~~~g~d~vitvDlH~~~~~~fF~ip 159 (330)
T PRK02812 80 PVNDHLMELLIMVDACRRASARQITAVIPYYGYARADRKTAGRESITAKLVANLITKAGADRVLAMDLHSAQIQGYFDIP 159 (330)
T ss_pred CccHHHHHHHHHHHHHHHhCCceEEEEEecccccccccccCCCCCchHHHHHHHHHhcCCCEEEEEECCchHHcCccCCC
Confidence 1 3357899999999999986 46666552110 0011112222211110001111345444431110 1
Q ss_pred HHhhhcCHHHHHHHHHHHHcCCcEEEEchhhHHhhhh
Q 023800 235 AQAFAKSKKLVNMLKKQKESNRPYGAICASPALVLEP 271 (277)
Q Consensus 235 ~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~lLa~ 271 (277)
.+.+...+.+.+|+++..-.+-.|.+.-.|.. -+|+
T Consensus 160 v~nl~~~~~l~~~i~~~~~~~~vvVsPD~gg~-~ra~ 195 (330)
T PRK02812 160 CDHVYGSPVLLDYLASKNLEDIVVVSPDVGGV-ARAR 195 (330)
T ss_pred ceeeeChHHHHHHHHhcCCCCeEEEEECCccH-HHHH
Confidence 22344557788888664224567888888877 5543
No 410
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=21.84 E-value=5.9e+02 Score=22.87 Aligned_cols=89 Identities=8% Similarity=-0.061 Sum_probs=48.5
Q ss_pred CCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCC--CceEEcc-cCcEEEeCcchhhhccCCccEEEEcCCcchH
Q 023800 159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVAD--KLEILAS-CQVKLVADMLIDEAAKLSYDLIVLPGGLGGA 235 (277)
Q Consensus 159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~--~~~v~~~-~g~~i~~~~~~~~~~~~~~D~livpGG~~~~ 235 (277)
+.+||+|+=..|+--.|+.-.++--.....++..++-+. ++++.-. ..+.++ .+++.+..+.|++|.+.+..
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~---~~~~~~~~~~Dvvf~a~p~~-- 77 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ---DAAEFDWSQAQLAFFVAGRE-- 77 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE---eCchhhccCCCEEEECCCHH--
Confidence 457999999999998887655443212445666664431 2244311 123333 22332224689999977542
Q ss_pred HhhhcCHHHHHHHHHHHHcCCcEE
Q 023800 236 QAFAKSKKLVNMLKKQKESNRPYG 259 (277)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~~~~~i~ 259 (277)
...+|..++.++|..|.
T Consensus 78 -------~s~~~~~~~~~~g~~VI 94 (336)
T PRK08040 78 -------ASAAYAEEATNAGCLVI 94 (336)
T ss_pred -------HHHHHHHHHHHCCCEEE
Confidence 22345555555555444
No 411
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=21.68 E-value=3.5e+02 Score=23.21 Aligned_cols=88 Identities=14% Similarity=0.095 Sum_probs=43.4
Q ss_pred CeEEEEecCCCchhhHHHHHHHHHh-CCCeEEEEeeCCCce--EEcc--cCcEEEeCcchhhhccCCccEEEEcCCcchH
Q 023800 161 PQILVPIANGSEEMEAVIIIDILRR-AKANVVVASVADKLE--ILAS--CQVKLVADMLIDEAAKLSYDLIVLPGGLGGA 235 (277)
Q Consensus 161 ~kV~ill~~g~~~~e~~~~~~~l~~-a~~~v~~vs~~~~~~--v~~~--~g~~i~~~~~~~~~~~~~~D~livpGG~~~~ 235 (277)
+||+|+=+ |.-...+. ..+.. .+.++..+....... .... .+..+ ...++++ ..+.|+++++.+..
T Consensus 2 ~rVgIiG~-G~iG~~~~---~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~--~~d~~~l-~~~~DvVve~t~~~-- 72 (265)
T PRK13303 2 MKVAMIGF-GAIGAAVL---ELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRV--VSSVDAL-PQRPDLVVECAGHA-- 72 (265)
T ss_pred cEEEEECC-CHHHHHHH---HHHhhCCCceEEEEEEcCCCHHHHhhhhccCCee--eCCHHHh-ccCCCEEEECCCHH--
Confidence 57888766 54444333 33333 355665554321100 1111 13233 2335555 35689999997642
Q ss_pred HhhhcCHHHHHHHHHHHHcCCcEEEEchh
Q 023800 236 QAFAKSKKLVNMLKKQKESNRPYGAICAS 264 (277)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~~~~~i~aiC~G 264 (277)
...++.....++|+.+...-.|
T Consensus 73 -------~~~e~~~~aL~aGk~Vvi~s~~ 94 (265)
T PRK13303 73 -------ALKEHVVPILKAGIDCAVISVG 94 (265)
T ss_pred -------HHHHHHHHHHHcCCCEEEeChH
Confidence 1234555555666666654444
No 412
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=21.33 E-value=7.5e+02 Score=23.87 Aligned_cols=84 Identities=14% Similarity=0.135 Sum_probs=48.2
Q ss_pred CCCeEEEEecCCC-chhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh
Q 023800 159 NSPQILVPIANGS-EEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA 237 (277)
Q Consensus 159 ~~~kV~ill~~g~-~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~ 237 (277)
..++|+|+-.+|- ...++....+.|+ .+|++.-+..+.. . ..+....+++ +++|+++|.+-..
T Consensus 182 ~~~~V~~l~ghGE~~~~~~~~l~~~L~-~~y~v~~l~l~~~-~--------~~~~~ip~~l--~d~d~LvI~~P~~---- 245 (552)
T TIGR03521 182 REKRIAVLKGNGELADLQIADLVSTLK-EYYFIAPFTLDSV-A--------ANPAKTLADL--KKFDLIVIAKPTE---- 245 (552)
T ss_pred cCceEEEEeCCCCCChHHHHHHHHHHH-hcCceeeecchhc-c--------cCcccccccc--cCcCEEEEeCCCc----
Confidence 3478999987763 2334566777777 7888876665421 0 0011111221 3689999987421
Q ss_pred hhcCHHHHHHHHHHHHcCCcEE
Q 023800 238 FAKSKKLVNMLKKQKESNRPYG 259 (277)
Q Consensus 238 ~~~~~~~~~~l~~~~~~~~~i~ 259 (277)
.-.+.-...|.++..+|..+.
T Consensus 246 -~ls~~e~~~Ldqfl~~GG~ll 266 (552)
T TIGR03521 246 -AFSEREKYILDQYIMNGGKAL 266 (552)
T ss_pred -cCCHHHHHHHHHHHHcCCeEE
Confidence 124455667777776665443
No 413
>PRK01215 competence damage-inducible protein A; Provisional
Probab=21.27 E-value=5.4e+02 Score=22.20 Aligned_cols=86 Identities=20% Similarity=0.135 Sum_probs=47.3
Q ss_pred CCeEEEEec-C----C-CchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcc
Q 023800 160 SPQILVPIA-N----G-SEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLG 233 (277)
Q Consensus 160 ~~kV~ill~-~----g-~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~ 233 (277)
++|++|+.. + | ..+.-.......+...|+++.....-++.+ -.| ...+.... ..+|+||+.||.+
T Consensus 3 ~~~v~Ii~~GdEll~G~i~dtn~~~l~~~L~~~G~~v~~~~~v~Dd~------~~I--~~~l~~a~-~~~DlVIttGG~g 73 (264)
T PRK01215 3 KWFAWIITIGNELLIGRTVNTNASWIARRLTYLGYTVRRITVVMDDI------EEI--VSAFREAI-DRADVVVSTGGLG 73 (264)
T ss_pred CCEEEEEEEChhccCCeEEEhhHHHHHHHHHHCCCeEEEEEEeCCCH------HHH--HHHHHHHh-cCCCEEEEeCCCc
Confidence 357777754 2 2 123334566777888898876654332200 000 01222221 3579999999864
Q ss_pred h-HHh-------------hhcCHHHHHHHHHHHHc
Q 023800 234 G-AQA-------------FAKSKKLVNMLKKQKES 254 (277)
Q Consensus 234 ~-~~~-------------~~~~~~~~~~l~~~~~~ 254 (277)
. .++ +..+++..+++++++++
T Consensus 74 ~t~dD~t~eaia~~~g~~l~~~~e~~~~l~~~~~~ 108 (264)
T PRK01215 74 PTYDDKTNEGFAKALGVELELNEDALRMILEKYEK 108 (264)
T ss_pred CChhhhHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Confidence 2 111 23467888899877753
No 414
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=21.26 E-value=1.4e+02 Score=23.39 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=22.6
Q ss_pred cCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEch
Q 023800 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICA 263 (277)
Q Consensus 220 ~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~ 263 (277)
+.+.|+++|.|... .. ..+.+.-+.++..+-|.|.|+++
T Consensus 55 Pr~aDvllVtG~vt-~~----~~~~l~~~~e~~p~pk~VIA~Gs 93 (145)
T TIGR01957 55 PRQADVMIVAGTVT-KK----MAPALRRLYDQMPEPKWVISMGA 93 (145)
T ss_pred CCcceEEEEecCCc-HH----HHHHHHHHHHhccCCceEEEecc
Confidence 34689999999752 11 22333333334445788887743
No 415
>PRK10333 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional
Probab=21.17 E-value=2.8e+02 Score=22.32 Aligned_cols=106 Identities=9% Similarity=0.037 Sum_probs=50.1
Q ss_pred CCCeEEEEecCCCchhhHHHHHHHHHhCCCeEEE-------------EeeCCC-ceEEcccCcEEEeCcchh-hhccCCc
Q 023800 159 NSPQILVPIANGSEEMEAVIIIDILRRAKANVVV-------------ASVADK-LEILASCQVKLVADMLID-EAAKLSY 223 (277)
Q Consensus 159 ~~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~-------------vs~~~~-~~v~~~~g~~i~~~~~~~-~~~~~~~ 223 (277)
+.++|++.+.-+ .+.+....++.+...|.+|-+ +..+.. .-..+..|+. +|..... ..+..+.
T Consensus 33 ~a~~I~~Y~~~~-~Evdt~~li~~~~~~gk~v~lP~v~~~~~~~m~f~~~~~~~~l~~~~~gI~-EP~~~~~~~~~~~~i 110 (182)
T PRK10333 33 MAHTVAVFLSFD-GELDTQPLIEQLWRAGKRVYLPVLHPFSAGNLLFLNYHPQSELVMNRLKIH-EPKLDVRDVLPLSRL 110 (182)
T ss_pred cCCEEEEEcCCC-CCcCHHHHHHHHHHCCCEEEEeEEecCCCCEEEEEECCCCCccccCCCCCC-CCCccccccCCcccC
Confidence 346788887654 466666777777777653322 211111 0123445553 3332211 1234567
Q ss_pred cEEEEcCCcchHH--hhhcCH-HHHHHHHHHHHcCCcEEEEchhhH
Q 023800 224 DLIVLPGGLGGAQ--AFAKSK-KLVNMLKKQKESNRPYGAICASPA 266 (277)
Q Consensus 224 D~livpGG~~~~~--~~~~~~-~~~~~l~~~~~~~~~i~aiC~G~~ 266 (277)
|+++|||---+.. ++-.-. -.=++|.+....+....++|.-..
T Consensus 111 DlviVP~laFD~~G~RLG~GgGyYDR~L~~~~~~~~~~igla~~~Q 156 (182)
T PRK10333 111 DVLITPLVAFDEYGQRLGMGGGFYDRTLQNWQHYKTQPVGYAHDCQ 156 (182)
T ss_pred CEEEeCceEECCCCCcccCCcchHHHHHHHhcccCCcEEEEeeeeE
Confidence 9999997211111 111111 122344433222345788887665
No 416
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=21.17 E-value=3.3e+02 Score=19.66 Aligned_cols=52 Identities=15% Similarity=0.175 Sum_probs=33.4
Q ss_pred cCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCC
Q 023800 168 ANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGG 231 (277)
Q Consensus 168 ~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG 231 (277)
..+............++.+|+++.....+.. .+...+.+...++|+|.+...
T Consensus 8 ~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~------------~~~~~~~i~~~~pdiV~iS~~ 59 (125)
T cd02065 8 GGDVHDIGKNIVAIALRDNGFEVIDLGVDVP------------PEEIVEAAKEEDADVVGLSAL 59 (125)
T ss_pred CCchhhHHHHHHHHHHHHCCCEEEEcCCCCC------------HHHHHHHHHHcCCCEEEEecc
Confidence 3345566677777889999999988865432 122223333357898888764
No 417
>TIGR02336 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase. Members of this family are found in phylogenetically diverse bacteria, including Clostridium perfringens (in the Firmicutes), Bifidobacterium longum and Propionibacterium acnes (in the Actinobacteria), and Vibrio vulnificus (in the Proteobacteria), most of which occur as mammalian pathogens or commensals. The nominal activity, 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC 2.4.1.211), varies somewhat from instance to instance in relative rates for closely related substrates.
Probab=21.13 E-value=2.4e+02 Score=27.95 Aligned_cols=76 Identities=16% Similarity=0.167 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhccCCccEEEEcCCcchHHh---hhcCHHHHHHH
Q 023800 172 EEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAKLSYDLIVLPGGLGGAQA---FAKSKKLVNML 248 (277)
Q Consensus 172 ~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~---~~~~~~~~~~l 248 (277)
...++.+.+|.|+-+-++|+++|-+.- ..+--+++.|+||=.|......+ .-.++.+...|
T Consensus 466 q~ysy~GvlE~LSG~p~dV~FisFdDi----------------~~~gi~~didViIN~G~a~ta~SGG~~W~d~~~~~aL 529 (719)
T TIGR02336 466 QTYSYYGILECLSGMPVEVEFISFDDI----------------LEHGIDSDIDVIINGGDADTAWSGGDVWTNPKLVETV 529 (719)
T ss_pred hhhhHHHHHHHhcCCCeeEEEecHHHH----------------hhcCCCcCCcEEEecCcccccccCccccCCHHHHHHH
Q ss_pred HHHHHcCCcEEEEch
Q 023800 249 KKQKESNRPYGAICA 263 (277)
Q Consensus 249 ~~~~~~~~~i~aiC~ 263 (277)
+++.++|..+.+++.
T Consensus 530 r~fV~~GGglIGVgD 544 (719)
T TIGR02336 530 RAWVRGGGGFVGVGE 544 (719)
T ss_pred HHHHHcCCeEEEEEC
No 418
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=21.12 E-value=2.8e+02 Score=24.04 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=29.9
Q ss_pred eEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCC
Q 023800 162 QILVPIANGSEEMEAVIIIDILRRAKANVVVASVADK 198 (277)
Q Consensus 162 kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~ 198 (277)
||++--=||.....+....++|+..+ +|.+|+|..+
T Consensus 2 ~ILlTNDDGi~apGi~aL~~al~~~g-~V~VvAP~~e 37 (266)
T PRK13934 2 KILVTNDDGVHSPGLRLLYEFVSPLG-EVDVVAPETP 37 (266)
T ss_pred eEEEEcCCCCCCHHHHHHHHHHHhCC-cEEEEccCCC
Confidence 55555557999999999999998877 8999999876
No 419
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=20.97 E-value=2.6e+02 Score=23.31 Aligned_cols=34 Identities=6% Similarity=-0.134 Sum_probs=20.8
Q ss_pred eEEEEecC---CCchhhHHHHHHHHHhCCCeEEEEee
Q 023800 162 QILVPIAN---GSEEMEAVIIIDILRRAKANVVVASV 195 (277)
Q Consensus 162 kV~ill~~---g~~~~e~~~~~~~l~~a~~~v~~vs~ 195 (277)
||++++.+ .+...-+.+..+.++..|+++.+...
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~ 37 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKKLGVSVDIQAA 37 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHHHhCCeEEEEcc
Confidence 46777753 12222234566777778998887653
No 420
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=20.95 E-value=3.4e+02 Score=24.47 Aligned_cols=97 Identities=10% Similarity=0.103 Sum_probs=49.0
Q ss_pred CCeEEEEecCCCchhhHHHHHHHHHhCCCeEEEEeeCCCceEEcccCcEEEeCcchhhhcc-CCccEEEEcCCcchHHhh
Q 023800 160 SPQILVPIANGSEEMEAVIIIDILRRAKANVVVASVADKLEILASCQVKLVADMLIDEAAK-LSYDLIVLPGGLGGAQAF 238 (277)
Q Consensus 160 ~~kV~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~i~~~~~~~~~~~-~~~D~livpGG~~~~~~~ 238 (277)
.+|+.|+.-++....-.....+.|..+|+++..+-..++++-.+...+.-..+. +.+... .++|.|+-.||-. ..
T Consensus 26 ~~~~lvVtd~~v~~~~~~~v~~~l~~~g~~~~~~v~~~~e~~~s~~~v~~~~~~-l~~~~~~r~~d~IVaiGGG~-v~-- 101 (354)
T cd08199 26 SGRRFVVVDQNVDKLYGKKLREYFAHHNIPLTILVLRAGEAAKTMDTVLKIVDA-LDAFGISRRREPVLAIGGGV-LT-- 101 (354)
T ss_pred CCeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHH-HHHcCCCCCCCEEEEECCcH-HH--
Confidence 357777764444433234566788888888775533332121111111000000 111111 1238888676632 22
Q ss_pred hcCHHHHHHHHHHHHcCCcEEEEchh
Q 023800 239 AKSKKLVNMLKKQKESNRPYGAICAS 264 (277)
Q Consensus 239 ~~~~~~~~~l~~~~~~~~~i~aiC~G 264 (277)
++..++...+.+|.++..|.|-
T Consensus 102 ----D~ak~~A~~~~rg~p~i~VPTT 123 (354)
T cd08199 102 ----DVAGLAASLYRRGTPYVRIPTT 123 (354)
T ss_pred ----HHHHHHHHHhcCCCCEEEEcCc
Confidence 3345666567789998888873
No 421
>PRK14820 NADH dehydrogenase subunit B; Provisional
Probab=20.85 E-value=1.5e+02 Score=24.12 Aligned_cols=39 Identities=18% Similarity=0.160 Sum_probs=28.1
Q ss_pred cCCccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEch
Q 023800 220 KLSYDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAICA 263 (277)
Q Consensus 220 ~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~ 263 (277)
+..+|+++|-|... .+..+.+..++++..+-|.|.|+++
T Consensus 71 PR~aDillVeG~VT-----~~m~~~l~~~~e~~p~pk~VIAvGa 109 (180)
T PRK14820 71 PRQADMLMVMGTIA-----KKMAPVLKQVYLQMAEPRWVVAVGA 109 (180)
T ss_pred CccceEEEEEecCC-----cccHHHHHHHHHhcCCCCeEEEEec
Confidence 45689999998642 2346677777777778899888743
No 422
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=20.60 E-value=1.4e+02 Score=26.43 Aligned_cols=28 Identities=18% Similarity=0.024 Sum_probs=20.1
Q ss_pred HHHHHHHHHhCCCEEEEEchhHHHHHHHc
Q 023800 63 LESIVKKQASDGRLYAAICVFLAVALGSW 91 (277)
Q Consensus 63 ~~~~l~~~~~~g~~i~aiC~g~~~~La~a 91 (277)
+.++++...+.++.+..||-|.. +++.+
T Consensus 124 l~~i~~w~~~~~~s~LgICwGaQ-a~a~a 151 (302)
T PRK05368 124 LKEILDWAKTHVTSTLFICWAAQ-AALYH 151 (302)
T ss_pred HHHHHHHHHHcCCCEEEEcHHHH-HHHHH
Confidence 44555544556899999999999 66543
No 423
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=20.47 E-value=2.2e+02 Score=18.90 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=25.4
Q ss_pred ccEEEEcCCcchHHhhhcCHHHHHHHHHHHHcCCcEEEEc
Q 023800 223 YDLIVLPGGLGGAQAFAKSKKLVNMLKKQKESNRPYGAIC 262 (277)
Q Consensus 223 ~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC 262 (277)
-|++++..-. ...+++.+.++...++|.++.+++
T Consensus 48 ~d~~i~iS~s------g~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 48 GDVVIALSYS------GRTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCEEEEEECC------CCCHHHHHHHHHHHHcCCeEEEEe
Confidence 4777776532 135678888998889999999988
Done!