Query 023801
Match_columns 277
No_of_seqs 190 out of 1215
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 06:45:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023801.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023801hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02565 cysteine synthase 100.0 1.8E-61 3.9E-66 426.9 32.6 276 1-276 46-321 (322)
2 COG0031 CysK Cysteine synthase 100.0 1.9E-61 4.2E-66 412.6 31.1 256 1-259 42-299 (300)
3 PLN02556 cysteine synthase/L-3 100.0 4E-59 8.6E-64 417.7 31.2 276 1-276 90-365 (368)
4 PLN00011 cysteine synthase 100.0 2.3E-58 5E-63 408.3 34.0 276 1-276 48-323 (323)
5 PLN03013 cysteine synthase 100.0 5.7E-58 1.2E-62 412.2 29.6 261 1-261 154-415 (429)
6 TIGR01136 cysKM cysteine synth 100.0 3.1E-56 6.8E-61 391.6 32.3 262 1-263 38-299 (299)
7 TIGR01139 cysK cysteine syntha 100.0 5.4E-56 1.2E-60 390.0 32.0 261 1-263 37-298 (298)
8 KOG1252 Cystathionine beta-syn 100.0 2.3E-57 5E-62 385.5 19.6 273 1-273 83-360 (362)
9 PRK10717 cysteine synthase A; 100.0 4.2E-55 9.2E-60 389.2 32.1 269 1-271 44-325 (330)
10 PRK11761 cysM cysteine synthas 100.0 6.5E-55 1.4E-59 381.6 30.2 253 1-264 43-295 (296)
11 PLN02356 phosphateglycerate ki 100.0 2E-54 4.4E-59 389.1 30.3 269 1-271 84-410 (423)
12 TIGR01138 cysM cysteine syntha 100.0 6E-54 1.3E-58 374.7 30.0 252 1-263 39-290 (290)
13 cd01561 CBS_like CBS_like: Thi 100.0 1.4E-53 3E-58 373.6 31.6 256 1-259 33-291 (291)
14 TIGR01137 cysta_beta cystathio 100.0 3E-53 6.5E-58 393.2 31.0 270 1-271 42-319 (454)
15 COG1171 IlvA Threonine dehydra 100.0 1.9E-53 4.1E-58 369.7 24.1 258 1-269 56-326 (347)
16 PRK12483 threonine dehydratase 100.0 3.6E-51 7.8E-56 378.6 27.7 257 1-268 68-336 (521)
17 PLN02550 threonine dehydratase 100.0 8.1E-51 1.8E-55 378.3 27.7 255 1-266 140-406 (591)
18 cd06448 L-Ser-dehyd Serine deh 100.0 2.9E-50 6.4E-55 355.3 27.1 260 1-267 32-313 (316)
19 TIGR01124 ilvA_2Cterm threonin 100.0 4.2E-50 9.2E-55 371.7 27.2 256 1-267 48-315 (499)
20 PRK08526 threonine dehydratase 100.0 3.7E-50 8E-55 364.1 25.3 254 1-268 51-317 (403)
21 TIGR01127 ilvA_1Cterm threonin 100.0 2.9E-50 6.4E-55 364.8 24.5 255 1-269 31-297 (380)
22 PRK08813 threonine dehydratase 100.0 1.1E-49 2.5E-54 352.7 26.5 247 1-269 64-321 (349)
23 PRK08329 threonine synthase; V 100.0 1.5E-49 3.3E-54 355.1 27.0 247 1-258 88-347 (347)
24 PRK06382 threonine dehydratase 100.0 5.1E-50 1.1E-54 365.1 24.1 257 1-269 56-327 (406)
25 PRK09224 threonine dehydratase 100.0 1.6E-49 3.5E-54 369.3 27.7 258 1-269 51-320 (504)
26 PLN02970 serine racemase 100.0 8.9E-50 1.9E-54 354.2 24.7 249 1-259 58-320 (328)
27 PRK06352 threonine synthase; V 100.0 9.3E-50 2E-54 356.7 24.1 251 1-261 59-324 (351)
28 PRK07048 serine/threonine dehy 100.0 1.9E-49 4.2E-54 351.7 25.0 252 1-266 55-318 (321)
29 PRK08638 threonine dehydratase 100.0 3.8E-49 8.3E-54 349.9 26.1 254 1-267 58-324 (333)
30 PRK08639 threonine dehydratase 100.0 2.2E-49 4.7E-54 362.2 25.0 257 1-268 56-327 (420)
31 PRK07476 eutB threonine dehydr 100.0 4.3E-49 9.4E-54 349.3 25.8 256 1-270 50-319 (322)
32 PRK02991 D-serine dehydratase; 100.0 5.6E-49 1.2E-53 358.1 27.1 263 1-269 115-436 (441)
33 PRK08197 threonine synthase; V 100.0 5.6E-49 1.2E-53 357.1 27.1 251 1-260 111-386 (394)
34 TIGR02079 THD1 threonine dehyd 100.0 2.6E-49 5.6E-54 360.0 24.8 256 1-269 47-317 (409)
35 PRK08198 threonine dehydratase 100.0 3.1E-49 6.8E-54 360.6 25.0 247 1-259 53-311 (404)
36 PRK06110 hypothetical protein; 100.0 3.3E-49 7.1E-54 350.0 23.8 254 1-268 52-317 (322)
37 PRK06608 threonine dehydratase 100.0 4.5E-49 9.7E-54 350.2 23.9 255 1-267 54-324 (338)
38 PRK07591 threonine synthase; V 100.0 1E-48 2.2E-53 357.3 26.6 252 1-260 121-396 (421)
39 PRK07334 threonine dehydratase 100.0 6.5E-49 1.4E-53 357.7 24.6 254 1-268 54-317 (403)
40 PRK06721 threonine synthase; R 100.0 2.4E-48 5.3E-53 347.9 27.9 255 1-266 59-329 (352)
41 TIGR02991 ectoine_eutB ectoine 100.0 1.7E-48 3.6E-53 344.3 24.6 252 1-267 50-315 (317)
42 PRK06815 hypothetical protein; 100.0 2.2E-48 4.8E-53 344.1 24.7 244 1-256 51-307 (317)
43 PRK07409 threonine synthase; V 100.0 5.6E-48 1.2E-52 346.2 27.0 250 1-261 62-328 (353)
44 KOG1250 Threonine/serine dehyd 100.0 5.1E-48 1.1E-52 333.5 23.3 250 1-260 97-358 (457)
45 PRK08246 threonine dehydratase 100.0 6.4E-48 1.4E-52 339.8 23.6 244 1-260 53-308 (310)
46 cd01563 Thr-synth_1 Threonine 100.0 3.6E-47 7.8E-52 337.9 27.1 247 1-257 54-324 (324)
47 cd06447 D-Ser-dehyd D-Serine d 100.0 2.4E-47 5.2E-52 343.6 26.2 236 1-239 92-375 (404)
48 PRK06381 threonine synthase; V 100.0 3.6E-47 7.8E-52 337.1 26.7 245 1-255 47-318 (319)
49 cd01562 Thr-dehyd Threonine de 100.0 1.8E-47 4E-52 337.2 23.9 244 1-256 48-303 (304)
50 TIGR02035 D_Ser_am_lyase D-ser 100.0 6.2E-47 1.4E-51 343.4 27.5 251 1-255 110-420 (431)
51 PRK06450 threonine synthase; V 100.0 4.6E-47 1E-51 336.8 24.9 236 1-258 81-338 (338)
52 PRK06260 threonine synthase; V 100.0 8.3E-47 1.8E-51 343.3 26.1 250 1-261 99-374 (397)
53 PLN02569 threonine synthase 100.0 1.6E-46 3.4E-51 345.7 27.1 253 1-260 166-444 (484)
54 KOG1251 Serine racemase [Signa 100.0 8.2E-47 1.8E-51 307.2 20.9 248 1-260 56-315 (323)
55 PRK08206 diaminopropionate amm 100.0 2E-46 4.4E-51 339.8 25.8 260 1-267 77-393 (399)
56 PRK05638 threonine synthase; V 100.0 6.9E-46 1.5E-50 341.4 26.7 246 1-258 96-359 (442)
57 KOG1481 Cysteine synthase [Ami 100.0 1.2E-45 2.6E-50 305.7 21.7 271 1-273 80-378 (391)
58 cd00640 Trp-synth-beta_II Tryp 100.0 8.8E-45 1.9E-49 310.4 27.1 212 1-252 31-243 (244)
59 TIGR01747 diampropi_NH3ly diam 100.0 5.5E-45 1.2E-49 327.3 26.7 259 1-266 55-373 (376)
60 TIGR03844 cysteate_syn cysteat 100.0 6.1E-45 1.3E-49 329.0 24.1 250 1-259 101-384 (398)
61 TIGR00260 thrC threonine synth 100.0 1.7E-44 3.8E-49 321.2 26.2 249 1-259 55-328 (328)
62 cd06446 Trp-synth_B Tryptophan 100.0 3.7E-44 8E-49 322.4 27.1 253 1-260 66-364 (365)
63 cd06449 ACCD Aminocyclopropane 100.0 2E-44 4.3E-49 317.8 20.9 247 1-254 36-307 (307)
64 TIGR03528 2_3_DAP_am_ly diamin 100.0 8.1E-44 1.8E-48 321.8 25.3 260 1-266 74-392 (396)
65 PRK13028 tryptophan synthase s 100.0 7.7E-43 1.7E-47 314.2 27.6 255 1-261 94-393 (402)
66 TIGR00263 trpB tryptophan synt 100.0 5.9E-43 1.3E-47 316.1 26.5 255 1-261 82-381 (385)
67 TIGR01275 ACC_deam_rel pyridox 100.0 6.5E-44 1.4E-48 315.3 19.3 248 1-256 40-302 (311)
68 TIGR01415 trpB_rel pyridoxal-p 100.0 1.6E-42 3.5E-47 314.6 27.8 257 1-268 101-417 (419)
69 PRK12391 tryptophan synthase s 100.0 2.5E-42 5.4E-47 313.7 27.9 259 1-267 110-425 (427)
70 PRK12390 1-aminocyclopropane-1 100.0 7.6E-43 1.7E-47 311.3 21.5 249 1-255 51-325 (337)
71 PRK04346 tryptophan synthase s 100.0 6E-42 1.3E-46 307.9 26.3 255 1-261 90-389 (397)
72 TIGR01274 ACC_deam 1-aminocycl 100.0 1.2E-42 2.5E-47 310.0 21.2 250 1-257 50-326 (337)
73 PRK03910 D-cysteine desulfhydr 100.0 1.3E-42 2.9E-47 309.0 19.4 249 1-256 48-320 (331)
74 PLN02618 tryptophan synthase, 100.0 3.4E-41 7.4E-46 303.6 26.2 255 1-261 103-402 (410)
75 PRK13802 bifunctional indole-3 100.0 4.3E-41 9.2E-46 318.3 28.1 255 1-261 363-669 (695)
76 PF00291 PALP: Pyridoxal-phosp 100.0 2.9E-41 6.3E-46 297.8 16.7 239 1-251 40-305 (306)
77 PRK14045 1-aminocyclopropane-1 100.0 4.6E-40 1E-44 292.2 19.6 246 1-256 54-316 (329)
78 PRK13803 bifunctional phosphor 100.0 4.1E-39 8.9E-44 305.3 26.2 255 1-261 302-601 (610)
79 COG0498 ThrC Threonine synthas 100.0 7.4E-37 1.6E-41 273.9 23.1 250 1-260 110-378 (411)
80 COG2515 Acd 1-aminocyclopropan 100.0 2.2E-29 4.7E-34 212.3 17.1 249 3-258 50-316 (323)
81 PRK09225 threonine synthase; V 100.0 2.6E-28 5.6E-33 223.5 24.7 245 1-261 112-418 (462)
82 cd01560 Thr-synth_2 Threonine 100.0 2.4E-27 5.3E-32 217.2 23.6 248 1-260 111-421 (460)
83 COG0133 TrpB Tryptophan syntha 99.9 6.4E-26 1.4E-30 191.8 22.6 251 5-261 91-386 (396)
84 COG1350 Predicted alternative 99.9 2.3E-23 4.9E-28 176.8 21.5 261 3-269 113-428 (432)
85 KOG1395 Tryptophan synthase be 99.9 3.5E-21 7.5E-26 164.9 20.2 250 4-259 158-452 (477)
86 COG3048 DsdA D-serine dehydrat 99.9 2E-20 4.4E-25 157.6 15.1 210 24-236 162-398 (443)
87 PF03808 Glyco_tran_WecB: Glyc 93.3 0.69 1.5E-05 37.2 8.6 101 34-140 13-114 (172)
88 COG0604 Qor NADPH:quinone redu 91.8 2.1 4.5E-05 38.2 10.4 57 15-74 137-193 (326)
89 cd08230 glucose_DH Glucose deh 90.6 2.2 4.7E-05 38.2 9.4 53 18-71 170-222 (355)
90 cd06533 Glyco_transf_WecG_TagA 89.9 3.6 7.7E-05 33.0 9.2 119 34-160 11-131 (171)
91 TIGR03201 dearomat_had 6-hydro 89.5 5.7 0.00012 35.5 11.2 59 12-74 158-216 (349)
92 PF00107 ADH_zinc_N: Zinc-bind 89.1 3.8 8.3E-05 30.6 8.5 32 127-161 58-89 (130)
93 cd08294 leukotriene_B4_DH_like 88.7 6.8 0.00015 34.2 11.1 58 14-74 137-194 (329)
94 TIGR03366 HpnZ_proposed putati 88.7 4 8.6E-05 35.2 9.3 58 12-72 112-169 (280)
95 TIGR02819 fdhA_non_GSH formald 88.4 7.6 0.00017 35.5 11.4 57 12-71 177-233 (393)
96 PF05368 NmrA: NmrA-like famil 87.9 9.6 0.00021 31.7 11.0 98 25-132 2-99 (233)
97 PF02826 2-Hacid_dh_C: D-isome 87.9 3.2 7E-05 33.4 7.7 118 23-165 37-156 (178)
98 COG1064 AdhP Zn-dependent alco 87.7 4 8.6E-05 36.6 8.7 61 11-75 157-217 (339)
99 KOG0025 Zn2+-binding dehydroge 87.6 4.1 8.8E-05 35.6 8.3 69 4-76 147-217 (354)
100 cd01075 NAD_bind_Leu_Phe_Val_D 87.3 8.4 0.00018 31.7 10.0 49 3-51 7-57 (200)
101 TIGR00670 asp_carb_tr aspartat 86.4 5.1 0.00011 35.3 8.6 60 14-75 144-208 (301)
102 cd08274 MDR9 Medium chain dehy 86.3 8.2 0.00018 34.1 10.2 56 12-71 169-224 (350)
103 PRK03562 glutathione-regulated 85.8 22 0.00048 34.8 13.5 51 23-76 401-451 (621)
104 PRK14030 glutamate dehydrogena 85.6 6.2 0.00013 36.7 9.1 50 3-52 209-258 (445)
105 cd08233 butanediol_DH_like (2R 85.4 13 0.00029 32.9 11.1 58 13-73 165-222 (351)
106 KOG2616 Pyridoxalphosphate-dep 85.1 1.9 4.1E-05 35.9 4.8 52 198-250 148-199 (266)
107 TIGR03451 mycoS_dep_FDH mycoth 85.0 12 0.00025 33.5 10.6 57 13-72 169-225 (358)
108 cd08295 double_bond_reductase_ 84.9 13 0.00028 32.9 10.8 56 14-72 145-201 (338)
109 PF01041 DegT_DnrJ_EryC1: DegT 84.3 2.3 4.9E-05 38.4 5.6 54 23-76 41-94 (363)
110 PRK03659 glutathione-regulated 84.1 22 0.00047 34.6 12.5 97 23-161 401-498 (601)
111 cd08281 liver_ADH_like1 Zinc-d 83.9 14 0.0003 33.3 10.6 56 14-72 185-240 (371)
112 TIGR02822 adh_fam_2 zinc-bindi 83.5 6 0.00013 35.1 7.9 57 13-73 158-214 (329)
113 cd08256 Zn_ADH2 Alcohol dehydr 83.4 20 0.00043 31.8 11.3 57 13-72 167-223 (350)
114 TIGR02825 B4_12hDH leukotriene 83.2 8.3 0.00018 33.8 8.7 58 14-74 132-189 (325)
115 TIGR00696 wecB_tagA_cpsF bacte 83.2 12 0.00027 30.2 8.9 98 34-139 13-112 (177)
116 cd08285 NADP_ADH NADP(H)-depen 83.1 33 0.00071 30.4 14.4 55 13-70 159-213 (351)
117 PLN03154 putative allyl alcoho 82.7 22 0.00048 31.8 11.3 57 14-73 152-209 (348)
118 PF00670 AdoHcyase_NAD: S-aden 82.7 18 0.0004 28.7 9.4 94 17-138 19-112 (162)
119 TIGR01751 crot-CoA-red crotony 82.7 9.8 0.00021 34.6 9.2 57 15-74 184-240 (398)
120 COG0399 WecE Predicted pyridox 82.3 16 0.00034 33.3 10.1 54 23-76 50-103 (374)
121 cd08297 CAD3 Cinnamyl alcohol 82.0 18 0.00038 31.9 10.4 51 17-70 162-212 (341)
122 cd08293 PTGR2 Prostaglandin re 81.9 22 0.00049 31.3 11.1 58 14-74 146-207 (345)
123 cd08296 CAD_like Cinnamyl alco 81.3 21 0.00045 31.5 10.6 52 16-71 159-210 (333)
124 cd08239 THR_DH_like L-threonin 81.3 12 0.00026 33.0 9.1 59 12-73 155-213 (339)
125 KOG0023 Alcohol dehydrogenase, 81.2 12 0.00025 33.3 8.4 62 12-76 173-234 (360)
126 PRK10309 galactitol-1-phosphat 81.1 11 0.00025 33.4 8.8 57 13-72 153-209 (347)
127 cd08292 ETR_like_2 2-enoyl thi 80.8 19 0.00041 31.3 10.1 55 13-70 132-186 (324)
128 PRK09880 L-idonate 5-dehydroge 80.7 18 0.0004 32.1 10.1 59 12-73 161-219 (343)
129 KOG0024 Sorbitol dehydrogenase 80.7 8.6 0.00019 34.1 7.5 62 11-75 160-221 (354)
130 cd08287 FDH_like_ADH3 formalde 80.6 26 0.00056 30.9 11.0 54 14-70 162-215 (345)
131 PTZ00079 NADP-specific glutama 80.6 13 0.00029 34.7 9.1 50 3-52 218-267 (454)
132 cd08289 MDR_yhfp_like Yhfp put 80.5 14 0.00031 32.1 9.2 49 20-71 146-194 (326)
133 cd05313 NAD_bind_2_Glu_DH NAD( 80.2 17 0.00038 31.2 9.1 51 3-53 19-69 (254)
134 PF07279 DUF1442: Protein of u 79.9 12 0.00026 31.2 7.7 58 9-69 32-94 (218)
135 cd08242 MDR_like Medium chain 79.6 12 0.00026 32.6 8.4 56 12-71 147-202 (319)
136 TIGR02818 adh_III_F_hyde S-(hy 78.7 17 0.00037 32.7 9.3 57 14-73 179-235 (368)
137 PF00185 OTCace: Aspartate/orn 78.5 11 0.00024 29.7 7.0 45 31-75 13-65 (158)
138 cd08288 MDR_yhdh Yhdh putative 78.1 20 0.00043 31.2 9.4 51 20-73 146-196 (324)
139 cd08269 Zn_ADH9 Alcohol dehydr 77.6 42 0.00091 28.8 11.2 55 12-70 121-176 (312)
140 COG2130 Putative NADP-dependen 77.4 21 0.00045 31.6 8.7 61 12-75 142-203 (340)
141 TIGR01064 pyruv_kin pyruvate k 77.3 66 0.0014 30.4 12.9 124 36-165 261-407 (473)
142 cd08301 alcohol_DH_plants Plan 77.3 20 0.00044 32.1 9.4 58 13-73 180-237 (369)
143 cd08277 liver_alcohol_DH_like 77.2 19 0.0004 32.4 9.1 57 13-72 177-233 (365)
144 PLN02740 Alcohol dehydrogenase 77.2 17 0.00036 33.0 8.8 57 14-73 192-248 (381)
145 cd08300 alcohol_DH_class_III c 77.1 16 0.00035 32.8 8.6 57 14-73 180-236 (368)
146 cd00401 AdoHcyase S-adenosyl-L 76.6 13 0.00028 34.4 7.8 53 16-72 197-249 (413)
147 cd05211 NAD_bind_Glu_Leu_Phe_V 75.7 17 0.00037 30.4 7.7 52 3-54 4-55 (217)
148 cd08258 Zn_ADH4 Alcohol dehydr 75.5 43 0.00094 29.1 10.7 55 14-70 158-212 (306)
149 PRK10754 quinone oxidoreductas 75.4 48 0.001 28.9 11.1 55 14-71 134-188 (327)
150 cd08291 ETR_like_1 2-enoyl thi 75.3 33 0.00072 30.0 10.0 49 23-74 145-194 (324)
151 PRK09424 pntA NAD(P) transhydr 75.3 15 0.00032 35.0 8.0 53 19-75 163-215 (509)
152 PTZ00354 alcohol dehydrogenase 75.2 43 0.00093 29.1 10.7 56 15-73 135-190 (334)
153 cd08284 FDH_like_2 Glutathione 75.0 22 0.00047 31.3 8.8 53 16-71 163-215 (344)
154 PF01210 NAD_Gly3P_dh_N: NAD-d 74.8 7.4 0.00016 30.6 5.1 42 25-69 2-43 (157)
155 cd08246 crotonyl_coA_red croto 74.5 23 0.0005 32.1 9.0 56 16-74 189-244 (393)
156 PRK05396 tdh L-threonine 3-deh 74.5 23 0.0005 31.2 8.9 51 19-72 162-212 (341)
157 TIGR00561 pntA NAD(P) transhyd 74.2 56 0.0012 31.2 11.5 51 23-76 165-215 (511)
158 cd06324 PBP1_ABC_sugar_binding 74.1 58 0.0013 28.2 17.2 43 116-161 192-238 (305)
159 PRK15408 autoinducer 2-binding 73.8 66 0.0014 28.7 17.6 43 116-161 199-242 (336)
160 cd08298 CAD2 Cinnamyl alcohol 73.5 25 0.00054 30.7 8.7 54 13-70 160-213 (329)
161 TIGR00692 tdh L-threonine 3-de 73.4 31 0.00068 30.4 9.4 52 17-71 158-209 (340)
162 PRK12823 benD 1,6-dihydroxycyc 73.3 43 0.00093 28.1 9.9 72 23-94 10-82 (260)
163 COG1063 Tdh Threonine dehydrog 73.0 71 0.0015 28.7 14.5 51 24-76 171-222 (350)
164 cd08231 MDR_TM0436_like Hypoth 72.7 69 0.0015 28.4 12.3 53 15-71 172-225 (361)
165 PRK13656 trans-2-enoyl-CoA red 72.6 77 0.0017 29.2 11.5 48 4-52 23-73 (398)
166 cd08251 polyketide_synthase po 71.9 61 0.0013 27.5 10.8 55 13-70 113-167 (303)
167 COG0078 ArgF Ornithine carbamo 71.8 21 0.00045 31.4 7.4 61 15-76 148-214 (310)
168 KOG1201 Hydroxysteroid 17-beta 71.7 69 0.0015 28.2 10.6 75 20-95 37-113 (300)
169 cd08245 CAD Cinnamyl alcohol d 71.7 32 0.00069 30.0 9.0 56 14-73 156-211 (330)
170 PRK08703 short chain dehydroge 71.4 54 0.0012 27.1 10.0 31 22-52 7-37 (239)
171 cd08240 6_hydroxyhexanoate_dh_ 71.4 54 0.0012 29.0 10.5 52 16-70 171-222 (350)
172 PRK07550 hypothetical protein; 71.2 78 0.0017 28.5 11.6 53 23-76 91-143 (386)
173 PF13561 adh_short_C2: Enoyl-( 71.1 26 0.00056 29.2 7.9 64 29-93 4-69 (241)
174 cd08261 Zn_ADH7 Alcohol dehydr 70.9 65 0.0014 28.2 10.8 52 14-69 153-204 (337)
175 PRK08340 glucose-1-dehydrogena 70.7 63 0.0014 27.1 11.1 30 23-52 2-31 (259)
176 cd08250 Mgc45594_like Mgc45594 70.5 66 0.0014 27.9 10.8 53 15-70 134-186 (329)
177 PTZ00075 Adenosylhomocysteinas 70.4 90 0.0019 29.5 11.7 93 19-139 252-344 (476)
178 PRK10083 putative oxidoreducta 70.4 52 0.0011 28.8 10.1 59 12-73 152-211 (339)
179 PRK15438 erythronate-4-phospha 69.9 68 0.0015 29.3 10.7 112 14-150 109-223 (378)
180 PLN02702 L-idonate 5-dehydroge 69.9 32 0.00069 30.7 8.7 58 13-73 174-231 (364)
181 KOG2862 Alanine-glyoxylate ami 69.3 84 0.0018 28.0 10.5 86 23-108 69-156 (385)
182 TIGR02823 oxido_YhdH putative 69.2 40 0.00087 29.2 9.1 55 13-70 137-192 (323)
183 PRK06348 aspartate aminotransf 69.1 42 0.0009 30.3 9.4 51 24-75 91-141 (384)
184 cd08264 Zn_ADH_like2 Alcohol d 68.9 34 0.00074 29.8 8.6 39 13-51 155-193 (325)
185 cd05282 ETR_like 2-enoyl thioe 68.8 48 0.001 28.6 9.5 53 14-69 132-184 (323)
186 cd08278 benzyl_alcohol_DH Benz 68.7 64 0.0014 28.9 10.4 56 14-72 180-235 (365)
187 PRK09422 ethanol-active dehydr 68.7 57 0.0012 28.5 10.0 56 13-72 155-211 (338)
188 PLN02527 aspartate carbamoyltr 68.7 65 0.0014 28.5 10.1 60 14-75 145-210 (306)
189 PRK07062 short chain dehydroge 68.7 70 0.0015 26.9 10.4 32 22-53 9-40 (265)
190 PLN02918 pyridoxine (pyridoxam 68.6 30 0.00065 33.2 8.3 49 23-71 137-192 (544)
191 PF09837 DUF2064: Uncharacteri 68.5 48 0.001 24.9 9.6 97 37-139 2-99 (122)
192 PRK12809 putative oxidoreducta 68.4 20 0.00044 35.1 7.6 68 7-74 289-380 (639)
193 cd08282 PFDH_like Pseudomonas 68.1 41 0.00088 30.3 9.1 55 13-70 169-223 (375)
194 cd08243 quinone_oxidoreductase 68.1 46 0.001 28.6 9.2 55 15-72 137-191 (320)
195 PLN02827 Alcohol dehydrogenase 68.0 41 0.00088 30.5 9.0 56 14-72 187-242 (378)
196 PRK12779 putative bifunctional 67.9 57 0.0012 33.7 10.8 32 22-53 306-337 (944)
197 cd08259 Zn_ADH5 Alcohol dehydr 67.9 46 0.001 28.8 9.2 52 16-70 158-209 (332)
198 PRK13243 glyoxylate reductase; 67.7 49 0.0011 29.6 9.3 97 23-143 151-247 (333)
199 cd08244 MDR_enoyl_red Possible 67.6 59 0.0013 28.1 9.8 54 13-69 135-188 (324)
200 cd08299 alcohol_DH_class_I_II_ 67.6 40 0.00086 30.4 8.9 55 13-70 183-237 (373)
201 PRK12771 putative glutamate sy 67.5 15 0.00034 35.3 6.5 56 18-74 134-207 (564)
202 cd05288 PGDH Prostaglandin deh 67.5 75 0.0016 27.6 10.5 54 14-70 139-193 (329)
203 PRK12481 2-deoxy-D-gluconate 3 67.4 70 0.0015 26.8 9.9 70 22-93 9-80 (251)
204 PF04127 DFP: DNA / pantothena 67.4 42 0.00091 27.3 8.1 63 23-94 21-83 (185)
205 PRK14031 glutamate dehydrogena 67.3 28 0.00061 32.5 7.8 51 3-53 209-259 (444)
206 cd05285 sorbitol_DH Sorbitol d 67.0 56 0.0012 28.8 9.6 56 13-71 155-210 (343)
207 PRK02610 histidinol-phosphate 66.8 47 0.001 29.9 9.2 85 24-108 93-182 (374)
208 PRK05993 short chain dehydroge 66.7 81 0.0018 26.9 11.0 51 23-76 6-56 (277)
209 PRK06182 short chain dehydroge 66.6 80 0.0017 26.7 10.7 67 23-93 5-71 (273)
210 PRK08306 dipicolinate synthase 66.1 74 0.0016 27.9 10.0 61 8-72 138-199 (296)
211 PRK11706 TDP-4-oxo-6-deoxy-D-g 65.8 23 0.0005 32.0 7.0 54 23-76 47-100 (375)
212 COG1587 HemD Uroporphyrinogen- 65.8 83 0.0018 26.6 10.2 119 34-162 86-212 (248)
213 PF01262 AlaDh_PNT_C: Alanine 65.7 30 0.00064 27.4 6.8 50 24-76 22-71 (168)
214 cd05281 TDH Threonine dehydrog 65.7 47 0.001 29.3 8.9 50 18-70 161-210 (341)
215 cd08262 Zn_ADH8 Alcohol dehydr 65.7 60 0.0013 28.5 9.5 55 13-70 154-208 (341)
216 cd08267 MDR1 Medium chain dehy 65.6 50 0.0011 28.3 8.9 52 15-70 138-189 (319)
217 cd08260 Zn_ADH6 Alcohol dehydr 65.6 72 0.0016 28.1 10.0 52 14-69 159-210 (345)
218 cd05278 FDH_like Formaldehyde 65.5 55 0.0012 28.7 9.3 54 14-70 161-214 (347)
219 TIGR02853 spore_dpaA dipicolin 65.5 68 0.0015 28.0 9.5 45 23-70 152-196 (287)
220 TIGR02824 quinone_pig3 putativ 65.5 87 0.0019 26.8 11.0 55 13-70 132-186 (325)
221 PRK09414 glutamate dehydrogena 65.5 27 0.00058 32.7 7.3 51 3-53 213-263 (445)
222 PF00106 adh_short: short chai 65.4 58 0.0013 25.0 8.5 53 23-75 2-58 (167)
223 cd05286 QOR2 Quinone oxidoredu 65.4 85 0.0018 26.6 10.9 54 14-70 130-183 (320)
224 PRK12743 oxidoreductase; Provi 65.2 57 0.0012 27.4 9.0 71 23-93 4-77 (256)
225 PRK05854 short chain dehydroge 64.9 76 0.0016 27.8 9.9 32 22-53 15-46 (313)
226 PRK11891 aspartate carbamoyltr 64.7 45 0.00097 31.0 8.5 52 24-75 243-300 (429)
227 cd08286 FDH_like_ADH2 formalde 64.6 63 0.0014 28.4 9.5 53 14-70 160-213 (345)
228 COG2242 CobL Precorrin-6B meth 64.6 67 0.0014 26.2 8.5 131 18-167 32-166 (187)
229 PF00070 Pyr_redox: Pyridine n 64.5 41 0.00089 22.7 7.8 50 25-74 2-60 (80)
230 cd08249 enoyl_reductase_like e 64.5 54 0.0012 28.9 9.0 49 18-70 152-200 (339)
231 TIGR00936 ahcY adenosylhomocys 64.5 42 0.0009 31.0 8.3 97 16-140 190-286 (406)
232 cd08279 Zn_ADH_class_III Class 64.3 1E+02 0.0023 27.4 10.9 54 14-70 176-229 (363)
233 PLN02477 glutamate dehydrogena 64.3 58 0.0012 30.1 9.1 51 3-53 187-237 (410)
234 cd05279 Zn_ADH1 Liver alcohol 64.1 76 0.0017 28.4 10.0 54 14-70 177-230 (365)
235 PLN03050 pyridoxine (pyridoxam 64.0 52 0.0011 28.1 8.3 33 23-55 62-97 (246)
236 PRK00257 erythronate-4-phospha 64.0 1.1E+02 0.0023 28.1 10.8 107 12-143 107-214 (381)
237 PRK08628 short chain dehydroge 64.0 71 0.0015 26.7 9.3 53 23-75 9-61 (258)
238 PRK08589 short chain dehydroge 63.9 72 0.0016 27.1 9.4 72 21-93 6-79 (272)
239 cd05283 CAD1 Cinnamyl alcohol 63.8 56 0.0012 28.8 9.0 52 18-73 167-218 (337)
240 PRK11658 UDP-4-amino-4-deoxy-L 63.7 60 0.0013 29.4 9.3 53 24-76 50-102 (379)
241 TIGR02817 adh_fam_1 zinc-bindi 63.6 63 0.0014 28.2 9.2 48 21-71 149-197 (336)
242 PRK08192 aspartate carbamoyltr 63.5 42 0.00092 30.1 8.0 53 23-75 160-218 (338)
243 PRK12828 short chain dehydroge 63.5 79 0.0017 25.8 9.4 55 22-76 8-63 (239)
244 cd08255 2-desacetyl-2-hydroxye 63.3 59 0.0013 27.5 8.8 52 13-68 90-142 (277)
245 COG0800 Eda 2-keto-3-deoxy-6-p 63.1 88 0.0019 26.0 10.6 20 57-76 74-93 (211)
246 cd08235 iditol_2_DH_like L-idi 62.9 1.1E+02 0.0023 26.9 11.4 53 14-69 159-211 (343)
247 PRK13376 pyrB bifunctional asp 62.9 36 0.00078 32.5 7.7 53 23-75 175-233 (525)
248 PF03853 YjeF_N: YjeF-related 62.6 77 0.0017 25.2 8.7 30 23-52 27-59 (169)
249 PRK08261 fabG 3-ketoacyl-(acyl 62.4 99 0.0021 28.6 10.6 71 21-92 210-280 (450)
250 PRK03692 putative UDP-N-acetyl 62.1 64 0.0014 27.5 8.5 67 61-138 98-168 (243)
251 cd05280 MDR_yhdh_yhfp Yhdh and 62.0 67 0.0015 27.7 9.1 47 23-72 149-195 (325)
252 PRK06935 2-deoxy-D-gluconate 3 61.9 83 0.0018 26.3 9.4 73 22-94 16-89 (258)
253 PF00702 Hydrolase: haloacid d 61.7 20 0.00044 28.9 5.4 66 4-76 131-203 (215)
254 cd08253 zeta_crystallin Zeta-c 61.4 1E+02 0.0022 26.2 10.8 53 15-70 139-191 (325)
255 PRK07814 short chain dehydroge 61.4 99 0.0021 26.0 11.4 32 22-53 11-42 (263)
256 PRK10669 putative cation:proto 61.3 39 0.00085 32.5 7.9 96 23-160 418-514 (558)
257 cd05284 arabinose_DH_like D-ar 61.3 1.1E+02 0.0024 26.7 10.4 50 17-70 164-214 (340)
258 PRK08912 hypothetical protein; 61.3 88 0.0019 28.2 9.9 52 24-76 89-140 (387)
259 TIGR03538 DapC_gpp succinyldia 61.0 92 0.002 28.2 10.0 53 24-76 92-145 (393)
260 PRK08993 2-deoxy-D-gluconate 3 60.8 98 0.0021 25.8 10.1 53 22-75 11-63 (253)
261 cd05188 MDR Medium chain reduc 60.7 96 0.0021 25.7 9.9 53 15-71 129-181 (271)
262 PRK15409 bifunctional glyoxyla 60.6 69 0.0015 28.5 8.8 104 23-150 146-252 (323)
263 PF02310 B12-binding: B12 bind 60.6 50 0.0011 24.1 6.9 94 34-137 17-114 (121)
264 TIGR01316 gltA glutamate synth 60.6 42 0.00091 31.3 7.8 53 23-75 273-330 (449)
265 PRK04284 ornithine carbamoyltr 60.4 79 0.0017 28.3 9.1 58 16-75 151-216 (332)
266 PRK09147 succinyldiaminopimela 60.1 94 0.002 28.1 9.9 53 24-76 92-146 (396)
267 PRK08226 short chain dehydroge 59.8 78 0.0017 26.5 8.9 52 23-74 8-59 (263)
268 PLN02342 ornithine carbamoyltr 59.8 61 0.0013 29.3 8.3 60 14-75 188-251 (348)
269 cd08234 threonine_DH_like L-th 59.6 1E+02 0.0022 26.8 9.9 54 14-70 153-206 (334)
270 TIGR00730 conserved hypothetic 59.6 92 0.002 25.1 10.3 49 113-164 17-66 (178)
271 PRK07109 short chain dehydroge 59.4 68 0.0015 28.4 8.7 72 23-94 10-83 (334)
272 COG0075 Serine-pyruvate aminot 59.3 35 0.00076 31.2 6.7 54 23-76 57-111 (383)
273 PRK13581 D-3-phosphoglycerate 59.3 79 0.0017 30.2 9.5 104 23-150 141-246 (526)
274 KOG1176 Acyl-CoA synthetase [L 59.2 95 0.0021 29.8 10.0 59 18-76 69-127 (537)
275 COG0623 FabI Enoyl-[acyl-carri 58.9 56 0.0012 27.8 7.3 69 61-136 25-93 (259)
276 PRK06702 O-acetylhomoserine am 58.9 72 0.0016 29.7 8.9 79 24-107 78-160 (432)
277 COG1751 Uncharacterized conser 58.8 85 0.0018 24.8 7.7 69 2-75 13-90 (186)
278 KOG1197 Predicted quinone oxid 58.8 1.1E+02 0.0024 26.6 9.0 54 14-70 140-193 (336)
279 cd08241 QOR1 Quinone oxidoredu 58.5 1.1E+02 0.0024 26.0 9.8 52 15-69 134-185 (323)
280 PRK00779 ornithine carbamoyltr 58.5 45 0.00098 29.4 7.2 61 14-75 146-209 (304)
281 PRK05957 aspartate aminotransf 58.3 75 0.0016 28.8 8.9 53 23-76 90-142 (389)
282 PRK06197 short chain dehydroge 58.2 1.2E+02 0.0025 26.3 9.9 33 22-54 17-49 (306)
283 PLN00175 aminotransferase fami 58.1 1.5E+02 0.0033 27.1 11.6 84 24-108 117-201 (413)
284 cd06268 PBP1_ABC_transporter_L 58.1 1.1E+02 0.0024 25.5 15.4 149 6-165 56-227 (298)
285 PRK05826 pyruvate kinase; Prov 57.9 1.7E+02 0.0037 27.6 11.4 124 36-164 263-406 (465)
286 PRK13394 3-hydroxybutyrate deh 57.8 1.1E+02 0.0023 25.6 9.3 54 22-75 8-62 (262)
287 PRK02102 ornithine carbamoyltr 57.5 1.3E+02 0.0029 26.9 10.0 60 14-75 149-216 (331)
288 COG2185 Sbm Methylmalonyl-CoA 57.4 36 0.00078 26.5 5.6 83 60-152 32-115 (143)
289 cd08248 RTN4I1 Human Reticulon 57.4 73 0.0016 28.0 8.6 47 20-70 162-208 (350)
290 PRK07324 transaminase; Validat 57.3 81 0.0017 28.4 8.9 52 24-76 82-133 (373)
291 PRK12775 putative trifunctiona 57.3 2.2E+02 0.0048 29.7 12.9 32 23-54 431-462 (1006)
292 cd08254 hydroxyacyl_CoA_DH 6-h 57.2 1.3E+02 0.0028 26.1 10.8 56 14-73 159-214 (338)
293 PF00764 Arginosuc_synth: Argi 57.2 1E+02 0.0023 28.2 9.4 126 26-159 2-138 (388)
294 TIGR01832 kduD 2-deoxy-D-gluco 57.0 1.1E+02 0.0024 25.2 9.5 53 22-75 6-58 (248)
295 COG0836 {ManC} Mannose-1-phosp 57.0 46 0.001 29.6 6.8 55 24-94 80-138 (333)
296 PF00208 ELFV_dehydrog: Glutam 56.9 40 0.00087 28.7 6.4 51 3-53 12-63 (244)
297 TIGR00658 orni_carb_tr ornithi 56.9 80 0.0017 27.9 8.5 61 14-75 142-208 (304)
298 PLN02586 probable cinnamyl alc 56.9 64 0.0014 28.9 8.2 55 16-73 179-233 (360)
299 PLN02178 cinnamyl-alcohol dehy 56.8 42 0.0009 30.4 6.9 51 19-72 177-227 (375)
300 PRK04148 hypothetical protein; 56.5 65 0.0014 24.8 6.9 49 23-75 18-66 (134)
301 PRK02255 putrescine carbamoylt 56.4 84 0.0018 28.2 8.6 51 25-75 157-214 (338)
302 cd01076 NAD_bind_1_Glu_DH NAD( 56.4 1.2E+02 0.0026 25.5 9.2 51 3-53 12-62 (227)
303 TIGR02379 ECA_wecE TDP-4-keto- 56.3 39 0.00085 30.7 6.7 54 23-76 47-100 (376)
304 PRK06836 aspartate aminotransf 56.2 1.2E+02 0.0026 27.5 9.9 52 24-76 98-149 (394)
305 PRK07366 succinyldiaminopimela 56.0 88 0.0019 28.2 9.0 83 24-108 94-179 (388)
306 PRK12562 ornithine carbamoyltr 55.8 78 0.0017 28.4 8.3 53 23-75 157-217 (334)
307 cd08290 ETR 2-enoyl thioester 55.7 1E+02 0.0022 27.0 9.2 58 16-73 142-200 (341)
308 cd08270 MDR4 Medium chain dehy 55.6 1.2E+02 0.0026 25.8 9.5 49 20-71 132-180 (305)
309 PRK14804 ornithine carbamoyltr 55.4 71 0.0015 28.3 7.9 38 20-57 152-189 (311)
310 cd08276 MDR7 Medium chain dehy 55.3 1.4E+02 0.003 25.8 10.9 53 15-71 155-207 (336)
311 PRK06139 short chain dehydroge 55.3 77 0.0017 28.1 8.3 53 22-74 8-61 (330)
312 cd08272 MDR6 Medium chain dehy 54.8 82 0.0018 27.0 8.4 54 14-71 138-191 (326)
313 PRK05476 S-adenosyl-L-homocyst 54.6 87 0.0019 29.1 8.6 93 20-140 211-303 (425)
314 PRK07792 fabG 3-ketoacyl-(acyl 54.4 1.2E+02 0.0026 26.4 9.3 54 22-75 13-68 (306)
315 PRK09242 tropinone reductase; 54.1 1.3E+02 0.0028 25.1 10.9 32 22-53 10-41 (257)
316 PF02737 3HCDH_N: 3-hydroxyacy 54.0 47 0.001 26.7 6.2 161 25-219 2-172 (180)
317 PRK10490 sensor protein KdpD; 53.9 1.6E+02 0.0034 30.3 11.2 107 23-136 252-375 (895)
318 PRK14807 histidinol-phosphate 53.3 1E+02 0.0022 27.4 8.8 52 24-76 78-129 (351)
319 cd08238 sorbose_phosphate_red 53.3 57 0.0012 29.8 7.3 52 14-67 169-222 (410)
320 TIGR03552 F420_cofC 2-phospho- 53.2 1.2E+02 0.0025 24.3 11.3 70 63-138 60-129 (195)
321 PRK06436 glycerate dehydrogena 53.2 1.6E+02 0.0035 25.9 9.9 111 23-162 123-235 (303)
322 COG1611 Predicted Rossmann fol 53.1 1.3E+02 0.0028 24.9 9.7 49 113-164 32-80 (205)
323 PLN02306 hydroxypyruvate reduc 53.1 1.1E+02 0.0024 28.0 9.0 130 23-163 166-299 (386)
324 PF11760 CbiG_N: Cobalamin syn 53.0 33 0.00072 24.0 4.3 47 120-166 4-50 (84)
325 TIGR03540 DapC_direct LL-diami 53.0 1.1E+02 0.0024 27.5 9.1 52 24-76 93-144 (383)
326 PRK09257 aromatic amino acid a 52.9 1.4E+02 0.003 27.0 9.8 48 26-75 98-148 (396)
327 PRK15407 lipopolysaccharide bi 52.9 1.1E+02 0.0024 28.5 9.2 53 24-76 80-140 (438)
328 PRK04523 N-acetylornithine car 52.8 1.3E+02 0.0029 26.9 9.3 45 31-75 185-236 (335)
329 cd05289 MDR_like_2 alcohol deh 52.7 1.2E+02 0.0026 25.6 9.0 51 15-69 139-189 (309)
330 PRK08862 short chain dehydroge 52.6 1.3E+02 0.0029 24.8 9.1 52 23-74 7-59 (227)
331 PRK12414 putative aminotransfe 52.5 1.1E+02 0.0024 27.6 9.0 52 24-76 92-143 (384)
332 PRK05166 histidinol-phosphate 52.5 98 0.0021 27.8 8.7 83 24-107 90-172 (371)
333 PRK08410 2-hydroxyacid dehydro 52.5 1.7E+02 0.0036 25.9 12.1 113 23-165 146-260 (311)
334 PRK08303 short chain dehydroge 52.5 1.6E+02 0.0035 25.7 10.0 72 22-94 9-93 (305)
335 CHL00194 ycf39 Ycf39; Provisio 52.4 66 0.0014 28.1 7.4 50 23-75 2-51 (317)
336 PRK04870 histidinol-phosphate 52.3 1.2E+02 0.0025 27.0 9.1 84 24-108 83-167 (356)
337 PRK08063 enoyl-(acyl carrier p 52.0 1.3E+02 0.0029 24.7 9.6 54 22-75 5-60 (250)
338 PRK12749 quinate/shikimate deh 52.0 94 0.002 27.1 8.1 33 23-55 125-157 (288)
339 PRK07523 gluconate 5-dehydroge 52.0 1.2E+02 0.0027 25.2 8.8 54 22-75 11-65 (255)
340 COG2518 Pcm Protein-L-isoaspar 51.9 87 0.0019 26.1 7.4 110 7-138 59-172 (209)
341 cd08265 Zn_ADH3 Alcohol dehydr 51.8 80 0.0017 28.5 8.0 54 16-72 199-252 (384)
342 PRK12937 short chain dehydroge 51.7 1.3E+02 0.0029 24.6 9.4 53 23-75 7-61 (245)
343 cd05276 p53_inducible_oxidored 51.7 1.5E+02 0.0032 25.1 10.1 53 15-70 134-186 (323)
344 PRK07478 short chain dehydroge 51.6 1.4E+02 0.003 24.8 9.4 72 23-94 8-81 (254)
345 PRK01713 ornithine carbamoyltr 51.5 62 0.0013 29.0 7.0 52 24-75 158-217 (334)
346 PRK07097 gluconate 5-dehydroge 51.4 1.2E+02 0.0027 25.4 8.7 54 22-75 11-65 (265)
347 cd08263 Zn_ADH10 Alcohol dehyd 51.4 1.8E+02 0.0038 25.9 10.4 51 16-69 183-233 (367)
348 PRK12831 putative oxidoreducta 51.2 75 0.0016 29.8 7.8 53 23-75 282-339 (464)
349 PF08659 KR: KR domain; Inter 51.1 1E+02 0.0022 24.5 7.7 72 23-94 2-79 (181)
350 cd08283 FDH_like_1 Glutathione 51.0 1.2E+02 0.0026 27.4 9.0 54 14-70 178-232 (386)
351 PRK05557 fabG 3-ketoacyl-(acyl 50.8 1.4E+02 0.003 24.4 9.4 53 23-75 7-61 (248)
352 PRK09545 znuA high-affinity zi 50.8 1E+02 0.0022 27.3 8.2 85 36-124 212-306 (311)
353 PRK07392 threonine-phosphate d 50.8 1.1E+02 0.0024 27.2 8.7 51 24-76 76-126 (360)
354 PRK07831 short chain dehydroge 50.8 1.5E+02 0.0032 24.8 10.5 31 21-51 17-48 (262)
355 PRK13984 putative oxidoreducta 50.7 1.2E+02 0.0027 29.3 9.5 51 23-73 284-352 (604)
356 PRK06172 short chain dehydroge 50.7 1.4E+02 0.003 24.7 8.9 54 22-75 8-62 (253)
357 COG2894 MinD Septum formation 50.6 1.5E+02 0.0033 25.2 8.5 120 36-166 22-149 (272)
358 TIGR01470 cysG_Nterm siroheme 50.5 1.4E+02 0.0031 24.5 8.7 50 23-75 10-59 (205)
359 PRK08277 D-mannonate oxidoredu 50.4 1.4E+02 0.0031 25.2 9.0 54 22-75 11-65 (278)
360 PRK08068 transaminase; Reviewe 50.0 1.2E+02 0.0026 27.4 8.8 52 24-76 96-147 (389)
361 PRK07791 short chain dehydroge 50.0 1.7E+02 0.0036 25.2 9.8 74 21-94 6-90 (286)
362 PRK07201 short chain dehydroge 49.7 2.1E+02 0.0046 27.8 11.1 32 22-53 372-403 (657)
363 cd08185 Fe-ADH1 Iron-containin 49.6 1.3E+02 0.0029 27.3 9.0 90 46-141 3-96 (380)
364 COG0159 TrpA Tryptophan syntha 49.6 78 0.0017 27.4 6.9 82 5-90 81-169 (265)
365 cd06320 PBP1_allose_binding Pe 49.5 1.6E+02 0.0034 24.7 17.3 34 126-161 181-216 (275)
366 PRK12769 putative oxidoreducta 49.3 1.4E+02 0.0031 29.3 9.8 51 23-73 328-396 (654)
367 PF13460 NAD_binding_10: NADH( 49.2 46 0.001 26.1 5.4 47 25-76 2-48 (183)
368 PRK12384 sorbitol-6-phosphate 49.2 1.5E+02 0.0034 24.6 10.4 31 23-53 4-34 (259)
369 PLN02494 adenosylhomocysteinas 49.0 79 0.0017 29.8 7.4 93 19-139 252-344 (477)
370 PRK06505 enoyl-(acyl carrier p 48.9 1.7E+02 0.0036 24.9 9.6 71 23-94 9-83 (271)
371 cd00288 Pyruvate_Kinase Pyruva 48.7 1E+02 0.0022 29.2 8.2 39 37-76 367-406 (480)
372 COG0026 PurK Phosphoribosylami 48.5 1.1E+02 0.0023 27.9 7.8 34 24-57 3-36 (375)
373 PRK07066 3-hydroxybutyryl-CoA 48.5 2E+02 0.0043 25.6 11.2 32 23-54 8-39 (321)
374 TIGR03590 PseG pseudaminic aci 48.5 1.8E+02 0.0039 25.1 10.1 34 42-76 50-88 (279)
375 PRK05786 fabG 3-ketoacyl-(acyl 48.5 1.5E+02 0.0032 24.2 9.6 32 23-54 7-38 (238)
376 PRK03515 ornithine carbamoyltr 48.4 75 0.0016 28.5 7.0 52 24-75 158-217 (336)
377 PRK06079 enoyl-(acyl carrier p 48.3 1.4E+02 0.003 25.0 8.5 30 23-52 9-40 (252)
378 PLN02928 oxidoreductase family 48.1 1.5E+02 0.0032 26.7 8.9 126 23-162 160-288 (347)
379 PRK07832 short chain dehydroge 47.9 1.7E+02 0.0037 24.7 10.0 30 23-52 2-31 (272)
380 PRK14805 ornithine carbamoyltr 47.8 74 0.0016 28.1 6.8 60 14-75 141-207 (302)
381 PRK07200 aspartate/ornithine c 47.7 82 0.0018 29.0 7.2 44 32-75 205-254 (395)
382 TIGR01327 PGDH D-3-phosphoglyc 47.2 1.4E+02 0.0031 28.5 9.1 105 23-150 139-245 (525)
383 PRK06114 short chain dehydroge 47.2 1.7E+02 0.0036 24.4 10.0 54 22-75 9-64 (254)
384 TIGR01064 pyruv_kin pyruvate k 47.1 1.4E+02 0.003 28.3 8.8 22 33-54 361-382 (473)
385 cd00616 AHBA_syn 3-amino-5-hyd 47.1 1.5E+02 0.0034 25.9 9.0 53 24-76 35-87 (352)
386 PRK06108 aspartate aminotransf 46.8 1.6E+02 0.0034 26.4 9.1 52 24-76 86-137 (382)
387 cd08236 sugar_DH NAD(P)-depend 46.7 1.7E+02 0.0038 25.5 9.2 51 15-69 154-205 (343)
388 cd06306 PBP1_TorT-like TorT-li 46.6 1.7E+02 0.0038 24.4 16.3 32 126-160 183-216 (268)
389 TIGR01264 tyr_amTase_E tyrosin 46.5 2E+02 0.0043 26.1 9.8 51 24-75 97-147 (401)
390 PRK07777 aminotransferase; Val 46.1 1.8E+02 0.0038 26.2 9.3 51 24-75 87-137 (387)
391 PRK12810 gltD glutamate syntha 46.1 1.1E+02 0.0025 28.6 8.2 52 23-74 144-213 (471)
392 PRK15481 transcriptional regul 45.9 2.4E+02 0.0052 25.9 10.8 81 24-108 143-226 (431)
393 PTZ00433 tyrosine aminotransfe 45.9 1.4E+02 0.0031 27.2 8.8 52 24-76 106-157 (412)
394 PF04989 CmcI: Cephalosporin h 45.9 60 0.0013 26.9 5.5 47 116-164 23-70 (206)
395 PRK10565 putative carbohydrate 45.8 1E+02 0.0023 29.3 7.9 51 1-53 42-95 (508)
396 cd06287 PBP1_LacI_like_8 Ligan 45.8 1.8E+02 0.004 24.5 15.1 31 127-159 178-212 (269)
397 COG2242 CobL Precorrin-6B meth 45.7 1.7E+02 0.0036 23.9 8.2 130 121-256 27-166 (187)
398 TIGR03877 thermo_KaiC_1 KaiC d 45.5 89 0.0019 26.2 6.8 61 9-70 10-74 (237)
399 PRK06207 aspartate aminotransf 45.5 2.2E+02 0.0047 26.0 9.9 51 24-75 104-154 (405)
400 PRK08363 alanine aminotransfer 45.4 1.4E+02 0.0031 26.9 8.7 50 24-74 95-144 (398)
401 smart00460 TGc Transglutaminas 45.3 31 0.00067 22.2 3.2 26 28-53 7-32 (68)
402 PRK12935 acetoacetyl-CoA reduc 44.9 1.8E+02 0.0038 24.0 8.9 53 23-75 8-62 (247)
403 PRK15469 ghrA bifunctional gly 44.8 1.8E+02 0.0039 25.7 8.9 104 23-150 137-242 (312)
404 PRK12744 short chain dehydroge 44.8 1.8E+02 0.004 24.2 8.7 53 23-75 10-67 (257)
405 PLN03049 pyridoxine (pyridoxam 44.7 64 0.0014 30.3 6.2 54 2-55 40-96 (462)
406 PRK06128 oxidoreductase; Provi 44.6 2.1E+02 0.0045 24.7 10.0 54 22-75 56-112 (300)
407 PRK06290 aspartate aminotransf 44.6 1.9E+02 0.0041 26.5 9.3 52 24-76 108-159 (410)
408 PLN02514 cinnamyl-alcohol dehy 44.5 1.6E+02 0.0035 26.2 8.7 55 15-72 175-229 (357)
409 PRK15454 ethanol dehydrogenase 44.3 1.2E+02 0.0026 27.8 7.8 91 44-141 24-119 (395)
410 PRK08217 fabG 3-ketoacyl-(acyl 44.3 1.8E+02 0.0039 23.9 8.8 54 22-75 6-60 (253)
411 PRK12814 putative NADPH-depend 44.3 1.6E+02 0.0035 29.0 9.2 57 17-74 319-381 (652)
412 PF13380 CoA_binding_2: CoA bi 44.3 1E+02 0.0022 22.7 6.2 46 25-70 59-104 (116)
413 PF00731 AIRC: AIR carboxylase 44.2 1.5E+02 0.0031 23.3 7.2 44 118-165 45-89 (150)
414 PRK01688 histidinol-phosphate 44.2 2.3E+02 0.005 25.1 10.4 56 18-76 72-128 (351)
415 PRK06949 short chain dehydroge 44.0 1.6E+02 0.0035 24.3 8.3 32 22-53 10-41 (258)
416 TIGR01318 gltD_gamma_fam gluta 44.0 1.2E+02 0.0025 28.5 7.9 51 23-73 142-210 (467)
417 PRK06124 gluconate 5-dehydroge 44.0 1.9E+02 0.004 24.0 8.8 54 21-74 11-65 (256)
418 TIGR03772 anch_rpt_subst ancho 43.8 1.4E+02 0.003 28.3 8.2 94 23-124 372-474 (479)
419 PRK06567 putative bifunctional 43.7 2.3E+02 0.005 29.6 10.2 32 22-53 383-414 (1028)
420 PRK06841 short chain dehydroge 43.6 1.9E+02 0.0041 24.0 9.3 32 22-53 16-47 (255)
421 PRK08017 oxidoreductase; Provi 43.5 1.9E+02 0.0041 23.9 9.6 51 23-76 4-54 (256)
422 PRK12480 D-lactate dehydrogena 43.5 1.2E+02 0.0025 27.2 7.5 102 23-150 147-250 (330)
423 PRK14057 epimerase; Provisiona 43.3 2.1E+02 0.0046 24.6 8.6 33 43-75 189-221 (254)
424 PRK05693 short chain dehydroge 43.3 2E+02 0.0044 24.2 10.2 66 23-92 3-68 (274)
425 TIGR03206 benzo_BadH 2-hydroxy 43.2 1.9E+02 0.004 23.8 8.7 54 22-75 4-58 (250)
426 cd08247 AST1_like AST1 is a cy 43.2 1.7E+02 0.0036 25.8 8.6 52 17-71 148-200 (352)
427 COG4558 ChuT ABC-type hemin tr 43.2 49 0.0011 28.9 4.7 22 56-77 110-131 (300)
428 cd08176 LPO Lactadehyde:propan 43.2 1.3E+02 0.0029 27.2 8.0 112 45-164 4-137 (377)
429 PRK12939 short chain dehydroge 43.1 1.9E+02 0.004 23.8 8.8 54 22-75 8-62 (250)
430 cd08232 idonate-5-DH L-idonate 43.0 2.1E+02 0.0046 24.9 9.2 52 15-70 161-212 (339)
431 PRK12826 3-ketoacyl-(acyl-carr 43.0 1.9E+02 0.004 23.7 8.8 53 23-75 8-61 (251)
432 PRK07069 short chain dehydroge 43.0 1.9E+02 0.0041 23.8 9.4 30 24-53 2-31 (251)
433 TIGR03316 ygeW probable carbam 42.9 1.1E+02 0.0023 27.8 7.1 44 32-75 188-237 (357)
434 PF13478 XdhC_C: XdhC Rossmann 42.9 36 0.00079 26.1 3.7 31 25-55 1-31 (136)
435 PRK12549 shikimate 5-dehydroge 42.9 82 0.0018 27.4 6.3 32 23-54 128-159 (284)
436 PRK12938 acetyacetyl-CoA reduc 42.8 1.9E+02 0.0041 23.8 9.5 52 23-74 5-58 (246)
437 PLN03026 histidinol-phosphate 42.8 1.8E+02 0.0038 26.3 8.8 84 24-108 105-189 (380)
438 PRK09082 methionine aminotrans 42.7 2.4E+02 0.0052 25.4 9.7 52 24-76 93-144 (386)
439 cd05195 enoyl_red enoyl reduct 42.7 1.9E+02 0.0042 23.9 9.4 52 14-68 102-153 (293)
440 PRK02731 histidinol-phosphate 42.7 1.5E+02 0.0033 26.3 8.3 52 24-76 86-137 (367)
441 PRK09134 short chain dehydroge 42.6 2E+02 0.0043 24.0 9.8 54 22-75 10-65 (258)
442 PF02254 TrkA_N: TrkA-N domain 42.6 1.3E+02 0.0027 21.7 7.7 48 25-75 1-48 (116)
443 cd08550 GlyDH-like Glycerol_de 42.5 1.2E+02 0.0025 27.3 7.4 94 61-164 15-111 (349)
444 TIGR03588 PseC UDP-4-keto-6-de 42.5 80 0.0017 28.4 6.5 50 25-76 47-98 (380)
445 PRK07309 aromatic amino acid a 42.5 2E+02 0.0043 26.0 9.1 52 24-76 93-144 (391)
446 PRK07683 aminotransferase A; V 42.4 1.9E+02 0.0042 26.1 9.0 52 24-76 91-142 (387)
447 PRK10538 malonic semialdehyde 42.3 2E+02 0.0043 23.8 9.1 49 23-74 2-51 (248)
448 PRK12778 putative bifunctional 42.2 3.7E+02 0.008 27.0 12.0 32 23-54 432-463 (752)
449 cd06450 DOPA_deC_like DOPA dec 42.2 1.7E+02 0.0037 25.6 8.5 53 24-76 59-124 (345)
450 cd06310 PBP1_ABC_sugar_binding 42.1 2E+02 0.0044 23.9 17.6 35 126-162 182-218 (273)
451 PRK08643 acetoin reductase; Va 42.1 2E+02 0.0043 23.8 9.3 53 23-75 4-57 (256)
452 PRK05876 short chain dehydroge 41.8 2.2E+02 0.0048 24.2 9.1 72 22-93 7-80 (275)
453 PRK05852 acyl-CoA synthetase; 41.7 2.2E+02 0.0048 26.7 9.6 67 10-76 57-123 (534)
454 PRK05973 replicative DNA helic 41.7 1.2E+02 0.0025 25.8 6.9 54 16-69 59-116 (237)
455 PRK10624 L-1,2-propanediol oxi 41.7 1.5E+02 0.0032 27.0 8.0 31 45-75 6-37 (382)
456 TIGR01317 GOGAT_sm_gam glutama 41.6 1.1E+02 0.0025 28.7 7.5 51 23-73 144-212 (485)
457 PRK06181 short chain dehydroge 41.6 2.1E+02 0.0045 23.9 8.7 53 23-75 3-56 (263)
458 TIGR00511 ribulose_e2b2 ribose 41.5 86 0.0019 27.6 6.2 58 18-76 113-174 (301)
459 PRK07035 short chain dehydroge 41.4 2E+02 0.0044 23.7 8.9 52 23-74 10-62 (252)
460 TIGR03537 DapC succinyldiamino 41.3 2.5E+02 0.0054 24.8 9.4 84 24-108 62-150 (350)
461 PRK06487 glycerate dehydrogena 41.2 1.7E+02 0.0037 25.9 8.1 110 23-163 149-260 (317)
462 PRK07454 short chain dehydroge 41.2 2E+02 0.0043 23.6 8.8 71 23-93 8-80 (241)
463 PRK11749 dihydropyrimidine deh 41.2 1.3E+02 0.0028 28.0 7.8 52 23-74 274-331 (457)
464 TIGR01141 hisC histidinol-phos 41.1 2.5E+02 0.0054 24.6 10.1 52 24-76 73-124 (346)
465 PRK05866 short chain dehydroge 41.1 2.1E+02 0.0045 24.7 8.6 53 22-74 41-94 (293)
466 PRK06463 fabG 3-ketoacyl-(acyl 41.1 2.1E+02 0.0045 23.8 10.8 69 22-93 8-76 (255)
467 COG1922 WecG Teichoic acid bio 41.1 1.9E+02 0.0041 24.9 7.9 85 66-160 106-193 (253)
468 KOG1205 Predicted dehydrogenas 41.0 2.5E+02 0.0054 24.6 9.0 72 23-94 14-89 (282)
469 PRK06483 dihydromonapterin red 41.0 2E+02 0.0043 23.5 10.2 67 23-92 4-70 (236)
470 PRK07060 short chain dehydroge 40.9 1.6E+02 0.0034 24.2 7.7 52 22-76 10-62 (245)
471 cd00609 AAT_like Aspartate ami 40.8 2.4E+02 0.0052 24.4 9.4 53 23-76 60-112 (350)
472 cd01137 PsaA Metal binding pro 40.8 1.5E+02 0.0033 25.7 7.7 63 23-94 178-248 (287)
473 PRK05764 aspartate aminotransf 40.7 2.2E+02 0.0049 25.5 9.1 52 24-76 93-144 (393)
474 cd08273 MDR8 Medium chain dehy 40.5 2.4E+02 0.0052 24.3 9.6 53 15-71 134-186 (331)
475 PRK08213 gluconate 5-dehydroge 40.5 2.1E+02 0.0047 23.7 8.8 54 22-75 13-67 (259)
476 PTZ00377 alanine aminotransfer 40.5 3.1E+02 0.0068 25.6 11.1 53 23-75 139-191 (481)
477 PRK08335 translation initiatio 40.5 1.1E+02 0.0025 26.5 6.7 58 18-76 107-168 (275)
478 TIGR00197 yjeF_nterm yjeF N-te 40.3 1.4E+02 0.0031 24.5 7.1 49 1-51 27-78 (205)
479 PRK08361 aspartate aminotransf 40.1 2E+02 0.0044 25.9 8.8 51 24-75 95-145 (391)
480 PRK14012 cysteine desulfurase; 40.1 1.7E+02 0.0037 26.6 8.3 53 24-76 68-126 (404)
481 PRK07666 fabG 3-ketoacyl-(acyl 40.1 2.1E+02 0.0045 23.4 9.2 53 23-75 9-62 (239)
482 PF12000 Glyco_trans_4_3: Gkyc 40.1 55 0.0012 26.3 4.4 42 114-161 54-95 (171)
483 PRK12429 3-hydroxybutyrate deh 40.0 2.1E+02 0.0046 23.6 9.1 53 23-75 6-59 (258)
484 cd08187 BDH Butanol dehydrogen 39.9 1.8E+02 0.004 26.4 8.4 112 46-164 6-138 (382)
485 PRK15452 putative protease; Pr 39.9 3.2E+02 0.007 25.6 11.4 104 48-161 4-117 (443)
486 PRK08264 short chain dehydroge 39.8 1.6E+02 0.0034 24.1 7.5 31 23-53 8-39 (238)
487 PRK12778 putative bifunctional 39.8 1.3E+02 0.0027 30.3 7.8 52 23-74 571-628 (752)
488 PF12831 FAD_oxidored: FAD dep 39.8 46 0.001 30.8 4.5 31 25-55 2-32 (428)
489 PF06745 KaiC: KaiC; InterPro 39.8 51 0.0011 27.3 4.4 55 15-69 13-72 (226)
490 PRK08278 short chain dehydroge 39.6 2.3E+02 0.0051 23.9 9.7 53 23-75 8-68 (273)
491 cd08252 AL_MDR Arginate lyase 39.6 1.6E+02 0.0034 25.6 7.8 47 21-70 150-197 (336)
492 PRK08936 glucose-1-dehydrogena 39.5 2.2E+02 0.0049 23.7 9.6 53 22-74 8-62 (261)
493 PRK08013 oxidoreductase; Provi 39.4 90 0.002 28.4 6.3 30 24-53 5-34 (400)
494 PRK05653 fabG 3-ketoacyl-(acyl 39.3 2.1E+02 0.0045 23.3 9.4 53 23-75 7-60 (246)
495 PF00890 FAD_binding_2: FAD bi 39.3 45 0.00098 30.4 4.4 31 25-55 2-32 (417)
496 PRK09754 phenylpropionate diox 39.1 2.4E+02 0.0052 25.6 9.1 33 23-55 145-177 (396)
497 PRK09276 LL-diaminopimelate am 38.9 2.2E+02 0.0048 25.5 8.8 52 24-76 95-146 (385)
498 COG1454 EutG Alcohol dehydroge 38.8 2.5E+02 0.0055 25.7 8.9 98 46-150 6-107 (377)
499 cd06453 SufS_like Cysteine des 38.8 1.7E+02 0.0038 25.9 8.1 54 23-76 62-121 (373)
500 COG0300 DltE Short-chain dehyd 38.8 2.6E+02 0.0056 24.2 10.3 69 22-93 7-81 (265)
No 1
>PLN02565 cysteine synthase
Probab=100.00 E-value=1.8e-61 Score=426.91 Aligned_cols=276 Identities=88% Similarity=1.326 Sum_probs=256.6
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|+++|..++++|.+.||.+.||++||||||+|+|++|+.+|++|+||||+++++.|+++|+.|||+|+.+++..++
T Consensus 46 KdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~ 125 (322)
T PLN02565 46 KDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGM 125 (322)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCc
Confidence 89999999999999999999977899999999999999999999999999999999999999999999999999865456
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+++++++.+++++++||+||.|+..||+|+++||++|+++.||+||+|+|+||+++|++++||+.+|++|||+|
T Consensus 126 ~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~V 205 (322)
T PLN02565 126 KGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPEIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGV 205 (322)
T ss_pred HHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 78888999998876678999999999998889999999999999667999999999999999999999999999999999
Q ss_pred ecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCC
Q 023801 161 EPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 240 (277)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~ 240 (277)
||++++++..+++.++.++|++.+..|..+..+.+|+++.|+|+|++++++.|++++|+++||+||+++++++++++++.
T Consensus 206 ep~~s~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~v~V~d~ea~~a~~~l~~~~gi~vg~ssga~laaa~~~a~~~~ 285 (322)
T PLN02565 206 EPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVDLLDEVVQVSSDEAIETAKLLALKEGLLVGISSGAAAAAAIKIAKRPE 285 (322)
T ss_pred ecCCCccccCCCCCCccCCCCCCCCCCCcCCHhHCCEEEEECHHHHHHHHHHHHHHhCcEEeccHHHHHHHHHHHHHhcC
Confidence 99999888777777777889988766777777889999999999999999999999999999999999999999988765
Q ss_pred CCCCeEEEEecCCCCCCcchhccHHHHHhhhccccC
Q 023801 241 NAGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 276 (277)
Q Consensus 241 ~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~~~~~ 276 (277)
.++++||+|+||+|.||+|+.+|+.+.....+|+||
T Consensus 286 ~~~~~vV~v~~d~G~ky~~~~~~~~~~~~~~~~~~~ 321 (322)
T PLN02565 286 NAGKLIVVIFPSFGERYLSSVLFESVKKEAENMVFE 321 (322)
T ss_pred CCCCeEEEEECCCccccCCchhhHHHHHHHhcCccC
Confidence 568899999999999999999999999999999997
No 2
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-61 Score=412.63 Aligned_cols=256 Identities=60% Similarity=0.991 Sum_probs=243.0
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC-
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG- 79 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~- 79 (277)
|||.|++|+.+|+++|.|+||. +||++||||+|+++|++|+.+|+++++|||++++.+|+++|++|||+|+.++...+
T Consensus 42 KDR~A~~mI~~Ae~~G~l~pG~-tIVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~ 120 (300)
T COG0031 42 KDRIALYMIEDAEKRGLLKPGG-TIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGN 120 (300)
T ss_pred hHHHHHHHHHHHHHcCCCCCCC-EEEEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCc
Confidence 8999999999999999999994 79999999999999999999999999999999999999999999999999997444
Q ss_pred hHHHHHHHHHHHHhCCC-eEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEE
Q 023801 80 MKGAVQKAEEILAKTPN-AYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLY 158 (277)
Q Consensus 80 ~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vi 158 (277)
+..+.+.+++++++.|+ .++.+||+||.||..||.+++.||++|+++.+|++|+++|||||++|++++||+.+|+++++
T Consensus 121 ~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~EI~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv 200 (300)
T COG0031 121 MKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPEIWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIV 200 (300)
T ss_pred hHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHHHHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEE
Confidence 78899999999999988 67778999999999999999999999998889999999999999999999999999999999
Q ss_pred EEecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhc
Q 023801 159 GIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKR 238 (277)
Q Consensus 159 gV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~ 238 (277)
+|||++++.+..+. +++.++||+.+++|..++.+.+|+++.|+|+++++++++|+++||+++++|||++++++++++++
T Consensus 201 ~vdP~~S~~~~~G~-g~~~i~GIG~~~ip~~~~~~~iD~v~~V~d~~A~~~~r~La~~eGilvG~SsGA~~~aa~~~a~~ 279 (300)
T COG0031 201 AVDPEGSVLLSGGE-GPHKIEGIGAGFVPENLDLDLIDEVIRVSDEEAIATARRLAREEGLLVGISSGAALAAALKLAKE 279 (300)
T ss_pred EECCCCCcccCCCC-CCcccCCCCCCcCCcccccccCceEEEECHHHHHHHHHHHHHHhCeeecccHHHHHHHHHHHHHh
Confidence 99999998876655 78899999999999888899999999999999999999999999999999999999999999988
Q ss_pred CCCCCCeEEEEecCCCCCCcc
Q 023801 239 PENAGKLIVVIFPSFGERYLS 259 (277)
Q Consensus 239 ~~~~~~~vv~i~~~gG~~~~~ 259 (277)
.. ++++||+|+||+|+||+|
T Consensus 280 ~~-~g~~IVti~pD~G~RYls 299 (300)
T COG0031 280 LP-AGKTIVTILPDSGERYLS 299 (300)
T ss_pred cC-CCCeEEEEECCCcccccC
Confidence 64 689999999999999998
No 3
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=4e-59 Score=417.68 Aligned_cols=276 Identities=62% Similarity=1.040 Sum_probs=252.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.++|.+++++|.+.||.++||++|+||||+|+|++|+++|++|+||||+.++..|+++|+.|||+|+.++...++
T Consensus 90 KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~~ 169 (368)
T PLN02556 90 KDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGM 169 (368)
T ss_pred HHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCc
Confidence 89999999999999999999988899999999999999999999999999999999999999999999999999864445
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
...++.+.+++++.++++|++||+||.++..||.++++||++|+.+.||+||+|+|||||++|+++++|+.+|++|||+|
T Consensus 170 ~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~EI~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigV 249 (368)
T PLN02556 170 GGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPEIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGV 249 (368)
T ss_pred cHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEE
Confidence 57788888888887788999999999995579999999999998668999999999999999999999999999999999
Q ss_pred ecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCC
Q 023801 161 EPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 240 (277)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~ 240 (277)
||++++.+..+++..+.++|++.+..|+.++..++|+++.|+|+|++++++.|++++|+++||+||++++++++++++..
T Consensus 250 ep~~~~~~~~g~~~~~~i~g~g~~~~p~~~~~~~~d~~v~Vsd~ea~~a~r~l~~~eGi~vg~ssgA~~~aal~~a~~~~ 329 (368)
T PLN02556 250 EPAESNVLNGGKPGPHHITGNGVGFKPDILDMDVMEKVLEVSSEDAVNMARELALKEGLMVGISSGANTVAALRLAKMPE 329 (368)
T ss_pred eeCCCccccCCCCCCeeeeeccCCCCccccchhhCCeEEEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhcc
Confidence 99999877777666667778877766777778899999999999999999999999999999999999999999887654
Q ss_pred CCCCeEEEEecCCCCCCcchhccHHHHHhhhccccC
Q 023801 241 NAGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 276 (277)
Q Consensus 241 ~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~~~~~ 276 (277)
.++++||+|++|+|.||+|+.+|++|..+...|+.+
T Consensus 330 ~~~~~IV~v~~d~g~kY~~~~~~~~~~~~~~~~~~~ 365 (368)
T PLN02556 330 NKGKLIVTVHPSFGERYLSSVLFQELRKEAENMQPV 365 (368)
T ss_pred CCcCEEEEEECCCCcccCChhhhHHHHHHHHhcCCc
Confidence 468899999999999999999999999999988765
No 4
>PLN00011 cysteine synthase
Probab=100.00 E-value=2.3e-58 Score=408.33 Aligned_cols=276 Identities=69% Similarity=1.084 Sum_probs=250.7
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.++|.+++++|.+.||.++||++|+||||+|+|++|+.+|++|+||||+.+++.|+++++.|||+|+.++...+.
T Consensus 48 K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~ 127 (323)
T PLN00011 48 KDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIGLACIGAARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIGL 127 (323)
T ss_pred chHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcCh
Confidence 89999999999999999999877899999999999999999999999999999999999999999999999999864444
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
++.++.+++++++.+++++++||+|+.++..||.++++||++|+.++||+||+|+|+|||++|+++++|+.+|++|||||
T Consensus 128 ~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~~t~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigV 207 (323)
T PLN00011 128 KGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVV 207 (323)
T ss_pred HHHHHHHHHHHHhCCCeEEeccccCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEE
Confidence 56677888888876678999999999987779999999999999668999999999999999999999999999999999
Q ss_pred ecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCC
Q 023801 161 EPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 240 (277)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~ 240 (277)
||++++++..+++..+.++|++.+..|..+....+|+++.|+|+|++++++.|++++|+++||+||++++++++++++..
T Consensus 208 e~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~Gi~~~~ssga~laaa~~~~~~~~ 287 (323)
T PLN00011 208 EPVESAVLSGGQPGPHLIQGIGSGIIPFNLDLTIVDEIIQVTGEEAIETAKLLALKEGLLVGISSGAAAAAALKVAKRPE 287 (323)
T ss_pred ecCCCcccCCCCCCCCCCCCCCCCCCCcccChhhCCeEEEECHHHHHHHHHHHHHhcCCeEcccHHHHHHHHHHHHHhcc
Confidence 99999888777777777888887766666677789999999999999999999999999999999999999999887654
Q ss_pred CCCCeEEEEecCCCCCCcchhccHHHHHhhhccccC
Q 023801 241 NAGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 276 (277)
Q Consensus 241 ~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~~~~~ 276 (277)
.++++||+|++|+|+||+|+.+|+.|..++.+++.|
T Consensus 288 ~~~~~vv~i~~d~G~ky~~~~~~~~~~~~~~~~~~~ 323 (323)
T PLN00011 288 NAGKLIVVIFPSGGERYLSTKLFESVRYEAENLPIE 323 (323)
T ss_pred CCCCeEEEEECCCccccCChhhhHHHHHhhhcCCCC
Confidence 467899999999999999999999988877777654
No 5
>PLN03013 cysteine synthase
Probab=100.00 E-value=5.7e-58 Score=412.22 Aligned_cols=261 Identities=73% Similarity=1.162 Sum_probs=240.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.++|.+++++|.++||+++||++||||||+|+|++|+.+|++++||||+++++.|+++|+.|||+|+.+++..++
T Consensus 154 KdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~ 233 (429)
T PLN03013 154 KDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGM 233 (429)
T ss_pred HHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCCh
Confidence 89999999999999999999977899999999999999999999999999999999999999999999999999875556
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
.++++.+++++++.++++|++||+||.|+..||+|+|+||++|++++||+||+|+|+||+++|+++++|+.+|+++||+|
T Consensus 234 ~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigV 313 (429)
T PLN03013 234 TGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGV 313 (429)
T ss_pred HHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEE
Confidence 78889999998887688999999999997679999999999999768999999999999999999999999999999999
Q ss_pred ecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCC
Q 023801 161 EPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 240 (277)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~ 240 (277)
||++++.+..+++.++.++|++.+.+|+.++..++|+++.|+|+|++++++.|++++|+++||+||++++++++++++..
T Consensus 314 ep~gs~~l~~g~~~~~~i~Glg~~~ip~~~~~~~vD~vv~VsD~ea~~a~r~La~~eGi~vG~SSGAalaAalkla~~~~ 393 (429)
T PLN03013 314 EPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPE 393 (429)
T ss_pred EeCCCchhhCCCCCCcccCcccCCcCCHhHHHHhccEEEEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhcc
Confidence 99999888777777778899998887888888899999999999999999999999999999999999999999887654
Q ss_pred CCCCeE-EEEecCCCCCCcchh
Q 023801 241 NAGKLI-VVIFPSFGERYLSSV 261 (277)
Q Consensus 241 ~~~~~v-v~i~~~gG~~~~~~~ 261 (277)
.++++| ++|++++|++|.++.
T Consensus 394 ~~g~~IVv~i~~d~g~~Y~~~~ 415 (429)
T PLN03013 394 NAGKLIAVSLFASGRDIYTPRC 415 (429)
T ss_pred CCCCEEEEEEcCCCchhchhhh
Confidence 456664 777788999999984
No 6
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=3.1e-56 Score=391.56 Aligned_cols=262 Identities=65% Similarity=1.058 Sum_probs=238.6
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.+++.+++++|.+.|| ++|+++|+||||+|+|++|+++|++|+||||+++++.|+++|+.+||+|+.+++..++
T Consensus 38 K~R~a~~~~~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~ 116 (299)
T TIGR01136 38 KDRIALSMIEDAEKRGLLKPG-DTIIEATSGNTGIALAMVAAAKGYKLILTMPETMSLERRKLLRAYGAELILTPAEEGM 116 (299)
T ss_pred cHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCCh
Confidence 899999999999999998888 5699999999999999999999999999999999999999999999999999975457
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+++++++.+++++++||+|+.++..||+++++||++|+++.||+||+|+|+||+++|++.+|++.+|.+||++|
T Consensus 117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~V 196 (299)
T TIGR01136 117 KGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDTDGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAV 196 (299)
T ss_pred HHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhcCCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEE
Confidence 88889999998876578899999999987889999999999999667999999999999999999999999999999999
Q ss_pred ecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCC
Q 023801 161 EPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 240 (277)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~ 240 (277)
||++++++...++....+.+++.+..|+.+...++|+.+.|+|+|++++++.|++.+|+++||+||+++++++++.++..
T Consensus 197 e~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~e~ssaa~~a~~~~~~~~~~ 276 (299)
T TIGR01136 197 EPAESPVLSGGEPGPHKIQGIGAGFIPKILDLSLIDEVITVSDEDAIETARRLAREEGILVGISSGAAVAAALKLAKRLE 276 (299)
T ss_pred ecCCCccccCCCCCCccCCCCCCCCCCccCChhhCCEEEEECHHHHHHHHHHHHHHhCceEcchHHHHHHHHHHHHHhcC
Confidence 99999888765555556677777667777778889999999999999999999999999999999999999999887754
Q ss_pred CCCCeEEEEecCCCCCCcchhcc
Q 023801 241 NAGKLIVVIFPSFGERYLSSVLF 263 (277)
Q Consensus 241 ~~~~~vv~i~~~gG~~~~~~~~~ 263 (277)
.++++||+|+|+.|.||+|+..|
T Consensus 277 ~~~~~vv~i~~d~g~ky~~~~~~ 299 (299)
T TIGR01136 277 NADKVIVAILPDTGERYLSTGLF 299 (299)
T ss_pred CCCCEEEEEECCCCccccCcccC
Confidence 56899999999999999997554
No 7
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=5.4e-56 Score=390.02 Aligned_cols=261 Identities=66% Similarity=1.073 Sum_probs=236.1
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.+++.+++++|.+.+| ++||++|+||||+|+|++|+++|++|+||+|+++++.|+++|+.+||+|+.+++..++
T Consensus 37 K~R~a~~~l~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~ 115 (298)
T TIGR01139 37 KDRIALNMIWDAEKRGLLKPG-KTIVEPTSGNTGIALAMVAAARGYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGM 115 (298)
T ss_pred hHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChhHHHHHHHHHHcCCeEEEEeCCccCHHHHHHHHHcCCEEEEECCCCCH
Confidence 899999999999999998888 5699999999999999999999999999999999999999999999999999975445
Q ss_pred HHHHHHHHHHHHhCCC-eEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEE
Q 023801 81 KGAVQKAEEILAKTPN-AYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 159 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vig 159 (277)
.++.+.+++++++.++ +++++||+||.+++.||+++++||++|+++.||+||+|+|+||+++|++.+|++..+++|||+
T Consensus 116 ~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~ 195 (298)
T TIGR01139 116 KGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRDTDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVA 195 (298)
T ss_pred HHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHHhCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEE
Confidence 6778888888887743 568999999998788999999999999965799999999999999999999999999999999
Q ss_pred EecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcC
Q 023801 160 IEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 239 (277)
Q Consensus 160 V~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~ 239 (277)
|||.+++++...++..+.+++++.+..+..+....+|+++.|+|+|++++++.|++++|+++||+||+++++++++.++.
T Consensus 196 Ve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~~pssga~laa~~~~~~~~ 275 (298)
T TIGR01139 196 VEPAESPVLSGGKPGPHKIQGIGAGFIPKNLNRSVIDEVITVSDEEAIETARRLAAEEGILVGISSGAAVAAALKLAKRP 275 (298)
T ss_pred EecCCCcccCCCCCCCCCCCCCCCCCCCCccChhhCCEEEEECHHHHHHHHHHHHHhcCceEcccHHHHHHHHHHHHHhc
Confidence 99999987776666666777888776677777788999999999999999999999999999999999999999987764
Q ss_pred CCCCCeEEEEecCCCCCCcchhcc
Q 023801 240 ENAGKLIVVIFPSFGERYLSSVLF 263 (277)
Q Consensus 240 ~~~~~~vv~i~~~gG~~~~~~~~~ 263 (277)
. ++++||+|+|++|.||+|+..|
T Consensus 276 ~-~~~~vv~v~~d~G~ky~~~~~~ 298 (298)
T TIGR01139 276 E-PDKLIVVILPSTGERYLSTPLF 298 (298)
T ss_pred C-CCCEEEEEECCCCccccCcccC
Confidence 3 6789999999999999997544
No 8
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-57 Score=385.45 Aligned_cols=273 Identities=68% Similarity=1.109 Sum_probs=256.6
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||.|+.||.+|+.+|.+.||.++|+++||||+|.++|++|+..|++|+++||+.++.+|+..|++||++|++++....+
T Consensus 83 KdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~ 162 (362)
T KOG1252|consen 83 KDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGLAYMAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGM 162 (362)
T ss_pred HHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHHHHHHHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999976555
Q ss_pred HH---HHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEE
Q 023801 81 KG---AVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKL 157 (277)
Q Consensus 81 ~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~v 157 (277)
.. +...+.++..+.|+.+.+.||.||.|+..||.+++.|||+|+.+++|.+|.++|||||++|+.+++|+.+|+++|
T Consensus 163 ~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~ttg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kV 242 (362)
T KOG1252|consen 163 KGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYETTGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKV 242 (362)
T ss_pred CChHHHHHHHHHHHHhCCChHHHHHhcCCCCcccccccccHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEE
Confidence 55 788999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred EEEecCCCCccCCCCCCC--cccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHH
Q 023801 158 YGIEPTESPVLSGGKPGP--HKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEI 235 (277)
Q Consensus 158 igV~~~~~~~~~~~~~~~--~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~ 235 (277)
++|+|..+..+...++++ +.++|+|.++.|..++...+|+.+.+.++|++.+.++|+.+||+.++.|||+++++++++
T Consensus 243 v~vdp~~S~~~~~~~~g~~~~~I~GIGyg~~p~~ld~~~vd~~~~~~~d~A~~~Ar~La~eeGll~G~SSGan~~aAl~~ 322 (362)
T KOG1252|consen 243 VGVDPQESIVLSGGKPGPTFHKIQGIGYGFIPTTLDTKLVDEVLKVSSDEAIEMARRLALEEGLLVGISSGANVAAALKL 322 (362)
T ss_pred EEeCCCcceeccCCCCCCCccceeccccCcCccccchHHHHHHHHhCCHHHHHHHHHHHHhhCeeecccchHHHHHHHHH
Confidence 999999998887777776 789999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCeEEEEecCCCCCCcchhccHHHHHhhhcc
Q 023801 236 AKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEAESM 273 (277)
Q Consensus 236 ~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~~ 273 (277)
+++.+..++-+|++++|+|.+|+++++|++|..+..++
T Consensus 323 a~~~en~~kliV~~~pd~ge~Y~st~L~d~w~~e~~~~ 360 (362)
T KOG1252|consen 323 AKRPENAGKLIVVTFPDFGERYLSTFLFDEWREEAEKL 360 (362)
T ss_pred HhccccCCcEEEEECCCcchhhhhhhhHHHHHHHHhhh
Confidence 99877555555555489999999999999999987765
No 9
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=4.2e-55 Score=389.24 Aligned_cols=269 Identities=43% Similarity=0.687 Sum_probs=232.4
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC--
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK-- 78 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~-- 78 (277)
|||++.++|.+++++|.++|| ++||++|+||||+|+|++|+++|++|+||||+.+++.|+++++.|||+|+.+++..
T Consensus 44 K~Rga~~~v~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~ 122 (330)
T PRK10717 44 KDRAALNIIWDAEKRGLLKPG-GTIVEGTAGNTGIGLALVAAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYA 122 (330)
T ss_pred hHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCcccc
Confidence 899999999999999998888 56999999999999999999999999999999999999999999999999998631
Q ss_pred ----ChHHHHHHHHHHHHhC-CCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCC
Q 023801 79 ----GMKGAVQKAEEILAKT-PNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNP 153 (277)
Q Consensus 79 ----~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~ 153 (277)
..+.+.+.++++.++. .+++|++||+||.++..||.++++||++|++..||+||+|+|+||+++|++++|++..|
T Consensus 123 ~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~ 202 (330)
T PRK10717 123 NPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAHYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNP 202 (330)
T ss_pred cccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHHHHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCC
Confidence 1122344455554443 27899999999998678999999999999966799999999999999999999999999
Q ss_pred CcEEEEEecCCCCccCC---CC---CCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHH
Q 023801 154 NIKLYGIEPTESPVLSG---GK---PGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 227 (277)
Q Consensus 154 ~~~vigV~~~~~~~~~~---~~---~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~ 227 (277)
++||++|||++++.... ++ ...+.+++++.+..++.+....+|+++.|+|+|++++++.|++++|+++||+||+
T Consensus 203 ~~~vi~Vep~~~~~~~~~~~g~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~vepssga 282 (330)
T PRK10717 203 KVKIVLADPTGSALYSYYKTGELKAEGSSITEGIGQGRITANLEGAPIDDAIRIPDEEALSTAYRLLEEEGLCLGGSSGI 282 (330)
T ss_pred CCEEEEEcCCCCccccccccCCcCCCCCcccCcCCCCcCCcccChhhCCEEEEECHHHHHHHHHHHHHhcCCeEeecHHH
Confidence 99999999999853321 21 2345678888776666666667899999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHHHhhh
Q 023801 228 AAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEAE 271 (277)
Q Consensus 228 alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~ 271 (277)
+++++++++++. .++++||+|+|++|+||+++++.++|+..+.
T Consensus 283 ~laa~~~l~~~~-~~~~~Vv~v~~g~g~ky~~~~~~d~~~~~~~ 325 (330)
T PRK10717 283 NVAAALRLAREL-GPGHTIVTILCDSGERYQSKLFNPDFLREKG 325 (330)
T ss_pred HHHHHHHHHHhc-CCCCEEEEEECCCchhhcccccCHHHHHhcC
Confidence 999999987764 4678999999999999999988889988654
No 10
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=6.5e-55 Score=381.63 Aligned_cols=253 Identities=47% Similarity=0.776 Sum_probs=224.4
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.+++.+++++|.+.|| ++||++|+||||+|+|++|+.+|++|+||||+.+++.|+++|+.|||+|+.++...++
T Consensus 43 K~R~a~~~~~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~ 121 (296)
T PRK11761 43 KDRPALSMIVQAEKRGEIKPG-DTLIEATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGM 121 (296)
T ss_pred hhHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCCh
Confidence 899999999999999998888 5699999999999999999999999999999999999999999999999999964467
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+++++++. +++|++||+|+.++..||+|+++||++|+++.+|+||+|+|+||+++|++++||+.+|++|||+|
T Consensus 122 ~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~~~~t~~~Ei~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigV 200 (296)
T PRK11761 122 EGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGPEIWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGL 200 (296)
T ss_pred HHHHHHHHHHHhcc-CCEecCCCCChhhHHHHhhchHHHHHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEE
Confidence 88888888888776 78999999999987788999999999999667999999999999999999999999999999999
Q ss_pred ecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCC
Q 023801 161 EPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 240 (277)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~ 240 (277)
||++++.+.+ +.+......+..++...+|+++.|+|+|++++++.|++++|+++||+||+++++++++.++
T Consensus 201 ep~~~~~i~g-------~~~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~gi~ve~ssga~laaa~~~~~~-- 271 (296)
T PRK11761 201 QPEEGSSIPG-------IRRWPEEYLPKIFDASRVDRVLDVSQQEAENTMRRLAREEGIFCGVSSGGAVAAALRIARE-- 271 (296)
T ss_pred ecCCCCcCcC-------CCCCCCCcCCcccChhhCCEEEEECHHHHHHHHHHHHHHhCceEchhHHHHHHHHHHHHHH--
Confidence 9998876532 1111112223444567789999999999999999999999999999999999999998765
Q ss_pred CCCCeEEEEecCCCCCCcchhccH
Q 023801 241 NAGKLIVVIFPSFGERYLSSVLFE 264 (277)
Q Consensus 241 ~~~~~vv~i~~~gG~~~~~~~~~~ 264 (277)
.++++||+|+||+|.||+|+..|+
T Consensus 272 ~~~~~vV~v~~d~g~ky~~~~~~~ 295 (296)
T PRK11761 272 NPNAVIVAIICDRGDRYLSTGVFP 295 (296)
T ss_pred CCCCeEEEEECCCCcccCChhccc
Confidence 367899999999999999986654
No 11
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=2e-54 Score=389.14 Aligned_cols=269 Identities=33% Similarity=0.523 Sum_probs=229.6
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC----
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP---- 76 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~---- 76 (277)
|||+|+++|.+|+++|.++|+. +|+++||||||+|+|++|+++|++|+||||+++++.|+++|+.|||+|+.+++
T Consensus 84 KdR~A~~~i~~a~~~g~~~~~g-~VveaSSGN~g~alA~~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~~ 162 (423)
T PLN02356 84 KDRVAVKIIEEALESGQLFPGG-VVTEGSAGSTAISLATVAPAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSIT 162 (423)
T ss_pred HHHHHHHHHHHHHhCCccCCCC-EEEEeCCHHHHHHHHHHHHHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEECCccCC
Confidence 8999999999999999988884 58889999999999999999999999999999999999999999999999963
Q ss_pred -CCChH-HHH---HHHHHHHHh--------------------------------CCCeEecCCCCCCcchhhhhhchHHH
Q 023801 77 -AKGMK-GAV---QKAEEILAK--------------------------------TPNAYMLQQFENPANPKIHYETTGPE 119 (277)
Q Consensus 77 -~~~~~-~~~---~~a~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~g~~t~~~E 119 (277)
..++. .+. ..+.+++++ .++.+|++||+|+.++..|+..+|+|
T Consensus 163 ~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~E 242 (423)
T PLN02356 163 HKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGCISEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPE 242 (423)
T ss_pred CcchhHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCCcEecCccCCcchHHHHHhhHHHH
Confidence 12221 111 223444433 14678999999999977766667999
Q ss_pred HHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEEecCCCCccC-------------CCC----CCCcccCccC
Q 023801 120 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS-------------GGK----PGPHKIQGIG 182 (277)
Q Consensus 120 i~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~-------------~~~----~~~~~~~gl~ 182 (277)
|++|++++||+||+|+||||+++|+++++|+.+|++||++|||.+++.+. .++ +.++.++|++
T Consensus 243 I~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkVigVep~~s~~~~~~~~~~~~~~s~~~G~~~~~~~~tia~Gig 322 (423)
T PLN02356 243 IWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCFLIDPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGIG 322 (423)
T ss_pred HHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccccccchhhhhhhhcCCccCCCCCeecCcCc
Confidence 99999768999999999999999999999999999999999999876331 121 1246788998
Q ss_pred CCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhc
Q 023801 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVL 262 (277)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~ 262 (277)
.+..|+.+....+|+++.|+|+|+++++++|++++|+++||+||++++++++++++. .++++||+|+|+.|.||+++++
T Consensus 323 ~~~~~~~~~~~~vD~~v~Vsd~ea~~a~r~L~~~~Gl~vg~Ssaa~laaa~~la~~~-~~g~~VV~Il~d~G~kyl~~~~ 401 (423)
T PLN02356 323 INRLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFVGSSSAMNCVGAVRVAQSL-GPGHTIVTILCDSGMRHLSKFH 401 (423)
T ss_pred CCCCChhHhHHhCCcEEEECHHHHHHHHHHHHHHCCeeEeECHHHHHHHHHHHHHHh-CCCCeEEEEECCCCcchhhhhc
Confidence 887777788888999999999999999999999999999999999999999987653 3688999999999999999988
Q ss_pred cHHHHHhhh
Q 023801 263 FESVRKEAE 271 (277)
Q Consensus 263 ~~~~~~~~~ 271 (277)
.++|+.++.
T Consensus 402 ~~~w~~~~~ 410 (423)
T PLN02356 402 DPQYLSQHG 410 (423)
T ss_pred CHHHHHhcC
Confidence 888887654
No 12
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=6e-54 Score=374.74 Aligned_cols=252 Identities=45% Similarity=0.795 Sum_probs=223.3
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.++|.+++++|.+.|| ++||++|+||||+|+|++|+++|++|+||||+.+++.|+++|+.|||+|+.+++..++
T Consensus 39 K~R~a~~~v~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~ 117 (290)
T TIGR01138 39 KDRPALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGM 117 (290)
T ss_pred HHHHHHHHHHHHHHcCCCCCC-CEEEEECCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCCh
Confidence 899999999999999999888 5699999999999999999999999999999999999999999999999999865457
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+++++++.+ .+|++||+|+.++..||.++++||++|++.+||+||+|+|+||+++|++.++|+.+|++|||+|
T Consensus 118 ~~~~~~a~~l~~~~~-~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~V 196 (290)
T TIGR01138 118 EGARDLALELANRGE-GKLLDQFNNPDNPYAHYTSTGPEIWQQTGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGL 196 (290)
T ss_pred HHHHHHHHHHHHhCC-CCCCCccCCcccHHHHhHhHHHHHHHHcCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 888889999988874 4689999999997778999999999999667999999999999999999999999999999999
Q ss_pred ecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCC
Q 023801 161 EPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 240 (277)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~ 240 (277)
||.+++.+.+ +.+++.+..+..+....+|+++.|+|+|++++++.|++++|+++||+||++++++++++++
T Consensus 197 ep~~~~~~~g-------~~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~~g~ssga~laa~~~~~~~-- 267 (290)
T TIGR01138 197 QPEEGSSIPG-------IRRWPTEYLPGIFDASLVDRVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAAALRLARE-- 267 (290)
T ss_pred eCCCCCCccC-------CCCCCCCcCCcccChhhCcEEEEECHHHHHHHHHHHHHHhCceEcHhHHHHHHHHHHHHHH--
Confidence 9999865432 1223333334445566789999999999999999999999999999999999999998775
Q ss_pred CCCCeEEEEecCCCCCCcchhcc
Q 023801 241 NAGKLIVVIFPSFGERYLSSVLF 263 (277)
Q Consensus 241 ~~~~~vv~i~~~gG~~~~~~~~~ 263 (277)
.++++||+|+||+|.||+|+.+|
T Consensus 268 ~~~~~vv~v~~d~g~ky~~~~~~ 290 (290)
T TIGR01138 268 LPDAVVVAIICDRGDRYLSTGVF 290 (290)
T ss_pred CCCCeEEEEECCCCccccCcccC
Confidence 36789999999999999998543
No 13
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=1.4e-53 Score=373.64 Aligned_cols=256 Identities=60% Similarity=0.966 Sum_probs=230.3
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC--
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK-- 78 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~-- 78 (277)
|||++.++|.+++++|.+++| ++|+++|+||||+|+|++|+++|++|+||||.++++.|+++++.+||+|+.++...
T Consensus 33 K~R~a~~~l~~a~~~g~~~~~-~~vv~~SsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~ 111 (291)
T cd01561 33 KDRIALYMIEDAEKRGLLKPG-TTIIEPTSGNTGIGLAMVAAAKGYRFIIVMPETMSEEKRKLLRALGAEVILTPEAEAD 111 (291)
T ss_pred hHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCcC
Confidence 899999999999999988777 56999999999999999999999999999999999999999999999999999642
Q ss_pred ChHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhh-hchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEE
Q 023801 79 GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHY-ETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKL 157 (277)
Q Consensus 79 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~-~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~v 157 (277)
+.+++.+.+++++++.++++|++||+||.+ +.|+ +|+++||++|++..||+||+|+|+||+++|++.+|++..|.++|
T Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~g~~~t~~~Ei~~ql~~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~v 190 (291)
T cd01561 112 GMKGAIAKARELAAETPNAFWLNQFENPAN-PEAHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVARYLKEKNPNVRI 190 (291)
T ss_pred CHHHHHHHHHHHHhhCCCcEEecCCCCchH-HHHHHHHHHHHHHHHcCCCCCEEEEeCChHHHHHHHHHHHHHhCCCCEE
Confidence 237788888888887667999999999999 4555 59999999999667999999999999999999999999999999
Q ss_pred EEEecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHh
Q 023801 158 YGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAK 237 (277)
Q Consensus 158 igV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~ 237 (277)
|+|||++++++.......+.++|++.+..++.+...++++++.|+|+|++++++.|++++|+++||++|+++++++++++
T Consensus 191 i~Ve~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~epssa~a~a~~~~~~~ 270 (291)
T cd01561 191 VGVDPVGSVLFSGGPPGPHKIEGIGAGFIPENLDRSLIDEVVRVSDEEAFAMARRLAREEGLLVGGSSGAAVAAALKLAK 270 (291)
T ss_pred EEEecCCCcccCCCCCCCCcCCCCCCCCCCCccCchhCceeEEECHHHHHHHHHHHHHHhCeeEcccHHHHHHHHHHHHH
Confidence 99999999877444445567788887766777777789999999999999999999999999999999999999999887
Q ss_pred cCCCCCCeEEEEecCCCCCCcc
Q 023801 238 RPENAGKLIVVIFPSFGERYLS 259 (277)
Q Consensus 238 ~~~~~~~~vv~i~~~gG~~~~~ 259 (277)
+.. ++++||+|+|++|.||+|
T Consensus 271 ~~~-~~~~vv~v~~~~g~ky~~ 291 (291)
T cd01561 271 RLG-PGKTIVTILPDSGERYLS 291 (291)
T ss_pred hcC-CCCeEEEEECCCccccCC
Confidence 653 678999999999999986
No 14
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=3e-53 Score=393.19 Aligned_cols=270 Identities=41% Similarity=0.682 Sum_probs=234.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.+++.+++++|.+.+| ++||++||||||+|+|++|+++|++|++|||+++++.|+.+++.|||+|+.+++...+
T Consensus 42 K~R~a~~~l~~a~~~g~~~~g-~~vv~~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~ 120 (454)
T TIGR01137 42 KDRIALRMIEDAEASGRLKPG-DTIIEPTSGNTGIGLALVAAIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAF 120 (454)
T ss_pred HHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHHHHHHcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCC
Confidence 899999999999999999988 6799999999999999999999999999999999999999999999999999863223
Q ss_pred H---HHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEE
Q 023801 81 K---GAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKL 157 (277)
Q Consensus 81 ~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~v 157 (277)
+ ...+.+.+++++.++.+|++||+|+.++..||.++|+||++|+++.||+||+|+|||||++|++.++++.+|.+||
T Consensus 121 ~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~v 200 (454)
T TIGR01137 121 DSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGPEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRI 200 (454)
T ss_pred CchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhHHHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEE
Confidence 2 2356677787775567889999999997789999999999999767999999999999999999999999999999
Q ss_pred EEEecCCCCccCCC-----CCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHH
Q 023801 158 YGIEPTESPVLSGG-----KPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAA 232 (277)
Q Consensus 158 igV~~~~~~~~~~~-----~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~ 232 (277)
++|||++++..... ....+.++|++.+..|+.+...++|+++.|+|+|++++++.|++++|+++||+||++++++
T Consensus 201 i~ve~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~~V~~~e~~~a~~~l~~~~gi~~~~ssg~~~aa~ 280 (454)
T TIGR01137 201 VGADPEGSILAQPENLNKTGRTPYKVEGIGYDFIPTVLDRKVVDEWIKTDDKESFKMARRLIKEEGLLVGGSSGSAVVAA 280 (454)
T ss_pred EEEecCCCcccCCCcccCCCCCCccCCCCCCCCCCCcCCchhCCeEEEECHHHHHHHHHHHHHHhCccCcHHHHHHHHHH
Confidence 99999988633221 1113456777766556667778899999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHHHhhh
Q 023801 233 IEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEAE 271 (277)
Q Consensus 233 ~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~ 271 (277)
++++++...++++||+++|++|.||+|+.++++|.....
T Consensus 281 ~~~~~~~~~~~~~vv~~~~d~g~~y~~~~~~~~w~~~~~ 319 (454)
T TIGR01137 281 LKAAEDELTEDQVIVVLLPDSIRNYMTKFLNDEWMKDNG 319 (454)
T ss_pred HHHHHhhcCCCCEEEEEECCCCccccCcccChHHHHhcC
Confidence 998874224678999999999999999999999877643
No 15
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-53 Score=369.72 Aligned_cols=258 Identities=24% Similarity=0.310 Sum_probs=227.4
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|-|+|++.+.++.+++..+. .||++|+||||+++|++|+++|+|++||||.++|..|++.++.|||+|++++. +|
T Consensus 56 K~RGA~n~i~~Ls~e~~~~~---gViaaSaGNHaQGvA~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~g~--~~ 130 (347)
T COG1171 56 KIRGAYNKLSSLSEEEERAA---GVIAASAGNHAQGVAYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGD--NF 130 (347)
T ss_pred hhhhHHHHHHhcChhhhhcC---ceEEecCCcHHHHHHHHHHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEECC--CH
Confidence 78999999999775544343 49999999999999999999999999999999999999999999999999995 78
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+.++++++ ++.|++|||+|.. ++||+|++.||++|++..||+||||+|+||+++|++.+++...|.+|||||
T Consensus 131 dda~~~a~~~a~~~-G~~~i~pfD~p~v-iAGQGTi~lEileq~~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGV 208 (347)
T COG1171 131 DDAYAAAEELAEEE-GLTFVPPFDDPDV-IAGQGTIALEILEQLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVIGV 208 (347)
T ss_pred HHHHHHHHHHHHHc-CCEEeCCCCCcce-eecccHHHHHHHHhccccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEE
Confidence 99999999999998 8999999999998 899999999999999555799999999999999999999999999999999
Q ss_pred ecCCCCccC----CC-CC-----CCcccCccCCCC---CccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHH
Q 023801 161 EPTESPVLS----GG-KP-----GPHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 227 (277)
Q Consensus 161 ~~~~~~~~~----~~-~~-----~~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~ 227 (277)
||++++++. .+ ++ ..+.++|++... .++.+.++++|+++.|+|+|+.++|+.+++.+++++||++++
T Consensus 209 Ep~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~~~g~~tf~i~~~~vd~~v~V~e~ei~~am~~l~~~~~iI~EpaGAl 288 (347)
T COG1171 209 EPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRPGDLTFEILRELVDDIVLVDEDEICAAMRDLFERTKIIAEPAGAL 288 (347)
T ss_pred eeCCChHHHHHHHcCCceeecCCCCccccccccCCCCHHHHHHHHHcCCcEEEECHHHHHHHHHHHHhcCCeeccccHHH
Confidence 999998764 33 22 234567887643 467788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHHHh
Q 023801 228 AAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 269 (277)
Q Consensus 228 alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 269 (277)
+++++++...+. .+++++++|+ +|||.+++ .|.+.++.
T Consensus 289 alAal~~~~~~~-~~g~~v~~il-SGgN~d~~--~~~~v~~~ 326 (347)
T COG1171 289 ALAALLAGKIEP-LQGKTVVVIL-SGGNIDFE--RLAEVLER 326 (347)
T ss_pred HHHHHHhhhhhh-cCCCeEEEEe-cCCCCCHH--HHHHHHhc
Confidence 999999876664 5777889998 99995555 55554443
No 16
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=3.6e-51 Score=378.59 Aligned_cols=257 Identities=25% Similarity=0.312 Sum_probs=223.0
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.++|..+.+... + +.||++|+||||+++|++|+++|++|+||||..+|+.|+..++.|||+|+.+++ +|
T Consensus 68 K~RGA~n~i~~l~~~~~-~---~GVV~aSaGNha~gvA~aA~~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~--~~ 141 (521)
T PRK12483 68 KIRGAYNKMARLPAEQL-A---RGVITASAGNHAQGVALAAARLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGE--SF 141 (521)
T ss_pred HHHHHHHHHHHhHHHHh-c---CcEEEECCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CH
Confidence 79999999998875432 3 349999999999999999999999999999999999999999999999999985 78
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+.+++++. +++|++||+||.+ ++||+|+++||++|+++.||+||+|+|+||+++|++.++|..+|++|||||
T Consensus 142 d~a~~~A~~la~e~-g~~~v~pfdd~~v-iaGqgTig~EI~eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGV 219 (521)
T PRK12483 142 PDALAHALKLAEEE-GLTFVPPFDDPDV-IAGQGTVAMEILRQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGV 219 (521)
T ss_pred HHHHHHHHHHHHhc-CCeeeCCCCChHH-HHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEE
Confidence 99999999999887 7899999999998 899999999999999656999999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCC-----CCcccCccCCCC---CccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHH
Q 023801 161 EPTESPVLS----GGKP-----GPHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228 (277)
Q Consensus 161 ~~~~~~~~~----~~~~-----~~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 228 (277)
||++++++. .+++ ..+.++|++... .++.+..+++|+++.|+|+|+.++++.|++++|+++||++|++
T Consensus 220 ep~~a~~~~~sl~~g~~~~~~~~~t~adGiav~~~g~~~~~~~~~~vd~vv~Vse~ei~~ai~~l~~~~~i~vEpagAaa 299 (521)
T PRK12483 220 EPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIGEHTFELCRHYVDEVVTVSTDELCAAIKDIYDDTRSITEPAGALA 299 (521)
T ss_pred EeCCCchhhHHHhcCCcccCCCCCceeceeccCCCCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhCCcEEeHHHHHH
Confidence 999998764 2322 224456776433 2345567899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHHH
Q 023801 229 AAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRK 268 (277)
Q Consensus 229 laa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~ 268 (277)
+++++++.++...++++||+|+ ||||-+++ .+.++++
T Consensus 300 lAal~~~~~~~~~~g~~VV~Il-sGgNid~~--~l~~i~~ 336 (521)
T PRK12483 300 VAGIKKYAEREGIEGQTLVAID-SGANVNFD--RLRHVAE 336 (521)
T ss_pred HHHHHHHHHhcCCCCCEEEEEe-CCCCCCHH--HHHHHHH
Confidence 9999998776655788999999 99995554 5555543
No 17
>PLN02550 threonine dehydratase
Probab=100.00 E-value=8.1e-51 Score=378.26 Aligned_cols=255 Identities=22% Similarity=0.277 Sum_probs=221.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.++|.++.+. .+++| ||++|+||||+++|++|+++|++|+||||++++..|++.++.|||+|++++. +|
T Consensus 140 K~RGA~n~I~~L~~e-~~~~G---VV~aSaGNhAqgvA~aA~~lGika~IvmP~~tp~~Kv~~~r~~GAeVvl~g~--~~ 213 (591)
T PLN02550 140 KLRGAYNMMAKLPKE-QLDKG---VICSSAGNHAQGVALSAQRLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGD--SY 213 (591)
T ss_pred HHHHHHHHHHHHHHh-cCCCC---EEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CH
Confidence 799999999998654 34444 9999999999999999999999999999999999999999999999999985 68
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+.+++++. +++|++||+||.+ ++||+|+|+||++|+++.+|+||+|+|+||+++|++.++|..+|++|||||
T Consensus 214 dea~~~A~~la~e~-g~~fi~pfddp~v-iaGqgTig~EI~eQl~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGV 291 (591)
T PLN02550 214 DEAQAYAKQRALEE-GRTFIPPFDHPDV-IAGQGTVGMEIVRQHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGV 291 (591)
T ss_pred HHHHHHHHHHHHhc-CCEEECCCCChHH-HHHHHHHHHHHHHHcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 99999999998886 7799999999998 899999999999999656999999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCCC-----CcccCccCCCC---CccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHH
Q 023801 161 EPTESPVLS----GGKPG-----PHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228 (277)
Q Consensus 161 ~~~~~~~~~----~~~~~-----~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 228 (277)
||++++++. .+++. .+.++|++... .++.+..+++|+++.|+|+|+.++++.+++++|+++||++|++
T Consensus 292 Ep~~a~~~~~s~~~G~~v~~~~~~tiAdGiav~~~G~~t~~i~~~~vD~vV~Vsd~eI~~Ai~~l~e~~givvEpAGA~a 371 (591)
T PLN02550 292 EPSDANAMALSLHHGERVMLDQVGGFADGVAVKEVGEETFRLCRELVDGVVLVSRDAICASIKDMFEEKRSILEPAGALA 371 (591)
T ss_pred EECCChHHHHHHhcCCccccCCCCCccceeecCCCCHHHHHHHHhhCCEEEEECHHHHHHHHHHHHHHCCCEEeHHHHHH
Confidence 999998763 33331 24456666432 2344567899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHH
Q 023801 229 AAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESV 266 (277)
Q Consensus 229 laa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~ 266 (277)
++|++++.++...++++||+|+ ||||-+++ .+++.
T Consensus 372 lAall~~~~~~~~~g~~Vv~vl-sGgNid~~--~l~~v 406 (591)
T PLN02550 372 LAGAEAYCKYYGLKDENVVAIT-SGANMNFD--RLRIV 406 (591)
T ss_pred HHHHHHHHHhcCCCCCeEEEEe-cCCCCCHH--HHHHH
Confidence 9999998776556888999999 99996555 44444
No 18
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=2.9e-50 Score=355.31 Aligned_cols=260 Identities=20% Similarity=0.207 Sum_probs=217.4
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.++|.+++++|. .|+ ++||++|+||||+|+|++|+.+|++|+||+|..+++.|+++|+.|||+|+.+++. .+
T Consensus 32 K~R~a~~~l~~a~~~g~-~~~-~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~l~~~GA~v~~~~~~-~~ 108 (316)
T cd06448 32 KIRGIGHLCQKSAKQGL-NEC-VHVVCSSGGNAGLAAAYAARKLGVPCTIVVPESTKPRVVEKLRDEGATVVVHGKV-WW 108 (316)
T ss_pred HHHHHHHHHHHHHHhhc-ccC-CeEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCc-hH
Confidence 89999999999999986 333 6799999999999999999999999999999999999999999999999999863 26
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCC--CCCEEEEecCCchhHHHHHHHHhhcC-CCcEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG--RIDALVSGIGTGGTITGAGKFLKEKN-PNIKL 157 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~--~~d~iv~pvG~Gg~~aGi~~~~~~~~-~~~~v 157 (277)
+++.+.+++++++.++++|++||+||.+ ++||.++++||++|+++ .||+||+|+|+||+++|++++|++.+ ++++|
T Consensus 109 ~~~~~~~~~l~~~~~~~~~~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~~~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~i 187 (316)
T cd06448 109 EADNYLREELAENDPGPVYVHPFDDPLI-WEGHSSMVDEIAQQLQSQEKVDAIVCSVGGGGLLNGIVQGLERNGWGDIPV 187 (316)
T ss_pred HHHHHHHHHHHhccCCcEEeCCCCCchh-hccccHHHHHHHHHccccCCCCEEEEEeCchHHHHHHHHHHHhcCCCCCEE
Confidence 6777778888777557899999999998 78999999999999965 59999999999999999999999996 99999
Q ss_pred EEEecCCCCccC----CCCC-----CCcccCccCCCCCcc---CccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccH
Q 023801 158 YGIEPTESPVLS----GGKP-----GPHKIQGIGAGFVPG---VLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISS 225 (277)
Q Consensus 158 igV~~~~~~~~~----~~~~-----~~~~~~gl~~~~~~~---~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~s 225 (277)
|+|||++++++. .+++ ..+.++|++.+..+. .......|+++.|+|+|+++++++|++++||++||+|
T Consensus 188 i~Vep~g~~~~~~~~~~g~~~~~~~~~t~a~glg~~~~~~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~~gi~~~~ss 267 (316)
T cd06448 188 VAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAKTVSSQALEYAQEHNIKSEVVSDRDAVQACLRFADDERILVEPAC 267 (316)
T ss_pred EEEeeCCChHHHHHHHcCCcEecCCCCchhhccCCCCcCHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceechhH
Confidence 999999997663 2222 234556787665432 2334568899999999999999999999999999999
Q ss_pred HHHHHHHHHH-----HhcCC-CCCCeEEEEecCCCCC-CcchhccHHHH
Q 023801 226 GGAAAAAIEI-----AKRPE-NAGKLIVVIFPSFGER-YLSSVLFESVR 267 (277)
Q Consensus 226 g~alaa~~~~-----~~~~~-~~~~~vv~i~~~gG~~-~~~~~~~~~~~ 267 (277)
|++++++++. .+++. .++++||+|+ ||||. +++ -|+++.
T Consensus 268 aa~laa~~~~~~~~~~~~~~~~~~~~Vv~il-tg~n~~~~~--~~~~~~ 313 (316)
T cd06448 268 GAALAVVYSGKILDLQLEVLLTPLDNVVVVV-CGGSNITLE--QLKEYK 313 (316)
T ss_pred HHHHHHHHhCcchhhhcccccCCCCeEEEEE-CCCCCCCHH--HHHHHH
Confidence 9999999853 22222 4788999999 77773 443 444443
No 19
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=4.2e-50 Score=371.74 Aligned_cols=256 Identities=23% Similarity=0.308 Sum_probs=221.6
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.+++.++.+... . +.||++|+||||+++|++|+++|++|+||||.++|..|++.++.|||+|+.++. ++
T Consensus 48 K~RgA~n~i~~l~~~~~-~---~gVV~aSaGNha~~vA~aa~~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~--~~ 121 (499)
T TIGR01124 48 KLRGAYNKMAQLSPEQK-A---RGVIAASAGNHAQGVAFSAARLGLKALIVMPETTPDIKVDAVRGFGGEVVLHGA--NF 121 (499)
T ss_pred HHHHHHHHHHHhhHHhc-C---CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEeCc--CH
Confidence 89999999998754322 2 459999999999999999999999999999999999999999999999999984 78
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+.+++++. +++|++||+||.+ ++||+|+|+||++|++.+||+||+|+|+|||++|++.++|..+|++|||||
T Consensus 122 d~a~~~a~~la~~~-g~~~i~p~~~~~~-i~G~gtig~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgV 199 (499)
T TIGR01124 122 DDAKAKAIELSQEK-GLTFIHPFDDPLV-IAGQGTLALEILRQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGV 199 (499)
T ss_pred HHHHHHHHHHHHhc-CCEeeCCCCChHH-HHhhHHHHHHHHHhCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEE
Confidence 89999999998886 7899999999998 899999999999999657999999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCC-----CCcccCccCCCC---CccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHH
Q 023801 161 EPTESPVLS----GGKP-----GPHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228 (277)
Q Consensus 161 ~~~~~~~~~----~~~~-----~~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 228 (277)
||++++++. .+++ ..+.++|++... .++.+.++++|+++.|+|+|+.++++.|++++|+++||++|++
T Consensus 200 ep~~~~~~~~s~~~g~~~~~~~~~t~adgiav~~~g~~~~~~~~~~vd~vv~V~d~ei~~ai~~l~~~~gii~EpagA~~ 279 (499)
T TIGR01124 200 EPTDSDCMKQALDAGEPVDLDQVGLFADGVAVKRVGDETFRLCQQYLDDIVTVDTDEVCAAIKDLFEDTRAVAEPAGALA 279 (499)
T ss_pred EECCChHHHHHHhcCCceeCCCCCCccCcccCCCccHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEEechHHHH
Confidence 999998663 2332 123456776543 2445667899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHH
Q 023801 229 AAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVR 267 (277)
Q Consensus 229 laa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~ 267 (277)
+++++++.++...+++++|+|+ +|||-+++ .++.+.
T Consensus 280 lAal~~~~~~~~~~~~~vv~i~-sG~n~~~~--~l~~~~ 315 (499)
T TIGR01124 280 LAGLKKYVALHGIRGQTLVAIL-SGANMNFH--RLRYVS 315 (499)
T ss_pred HHHHHHhhhhcCCCCCeEEEEE-CCCCCCHH--HHHHHH
Confidence 9999998877655788999999 88996655 444443
No 20
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=3.7e-50 Score=364.12 Aligned_cols=254 Identities=24% Similarity=0.314 Sum_probs=217.7
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.++|.++.+.+. . +.||++|+||||+++|++|+++|++|+||||++++..|++.++.|||+|+++++ ++
T Consensus 51 K~RgA~n~i~~l~~~~~-~---~gVV~aSaGNhg~avA~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g~--~~ 124 (403)
T PRK08526 51 KIRGAYNKIANLSEEQK-Q---HGVIAASAGNHAQGVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGD--NY 124 (403)
T ss_pred HHHHHHHHHHhccHhhc-C---CEEEEECccHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEEECC--CH
Confidence 79999999999987654 2 459999999999999999999999999999999999999999999999999985 78
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++++.+.+++++. +++|++||+||.+ ++||+|+++||++|+ +.||+||+|+|+||+++|++.++|..+|++|||||
T Consensus 125 ~~a~~~a~~~a~~~-g~~~v~p~~~~~~-i~G~gtia~EI~eq~-~~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigV 201 (403)
T PRK08526 125 DEAYAFALEYAKEN-NLTFIHPFEDEEV-MAGQGTIALEMLDEI-SDLDMVVVPVGGGGLISGIASAAKQINPNIKIIGV 201 (403)
T ss_pred HHHHHHHHHHHHhc-CCEeeCCCCCHHH-HhhhHHHHHHHHHhc-CCCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 99999999998886 7899999999987 899999999999999 57999999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCC-----CCcccCccCCCC---CccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHH
Q 023801 161 EPTESPVLS----GGKP-----GPHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228 (277)
Q Consensus 161 ~~~~~~~~~----~~~~-----~~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 228 (277)
||++++++. .+++ ..+.++|++... .++.+..+++|+++.|+|+|+.++++.|++++|+++||+++++
T Consensus 202 ep~~~~~~~~s~~~g~~~~~~~~~tiadgiav~~~~~~~~~~~~~~vd~~v~V~d~ei~~A~~~l~~~~gi~ve~aga~~ 281 (403)
T PRK08526 202 GAKGAPAMYESFHAKKIINSKSVRTIADGIAVRDASPINLAIILECVDDFVQVDDEEIANAILFLLEKQKIVVEGAGAAS 281 (403)
T ss_pred EECCCChHHHHHHcCCcccCCCCCceeccccCCCCCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEeeHHHHHH
Confidence 999998763 2332 234556776532 1223345789999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-CCCCeEEEEecCCCCCCcchhccHHHHH
Q 023801 229 AAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSSVLFESVRK 268 (277)
Q Consensus 229 laa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~~~~~~~~~ 268 (277)
+++++.. +.. .++++||+|+ ||||.+++ .+.+++.
T Consensus 282 lAall~~--~~~~~~~~~Vv~il-sGGnid~~--~~~~i~~ 317 (403)
T PRK08526 282 VAALLHQ--KIDLKKGKKIGVVL-SGGNIDVQ--MLNIIIE 317 (403)
T ss_pred HHHHHhC--ccccccCCeEEEEE-CCCCCCHH--HHHHHHH
Confidence 9998752 222 3578999999 99996555 5555544
No 21
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=2.9e-50 Score=364.76 Aligned_cols=255 Identities=22% Similarity=0.321 Sum_probs=219.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.+++.++.+++.. ++||++|+||||+++|++|+++|++|+||||+.+++.|+++++.|||+|++++. ++
T Consensus 31 K~R~a~~~i~~~~~~~~~----~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~ 104 (380)
T TIGR01127 31 KIRGALNKIANLSEDQRQ----RGVVAASAGNHAQGVAYAAKKFGIKAVIVMPESAPPSKVKATKSYGAEVILHGD--DY 104 (380)
T ss_pred HHHHHHHHHHhcchhccC----CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCcHHHHHHHHHCCCEEEEECC--CH
Confidence 799999999999988863 359999999999999999999999999999999999999999999999999985 68
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++++.+.+++++. +++|++||+||.+ ++||+|+++||++|+ +.||+||+|+|+||+++|++.++|+.+|++|||||
T Consensus 105 ~~a~~~a~~~~~~~-~~~~~~~~~~~~~-~~g~~t~~~Ei~~q~-~~~D~vv~~vG~Gg~~aGi~~~~k~~~p~~kvigV 181 (380)
T TIGR01127 105 DEAYAFATSLAEEE-GRVFVHPFDDEFV-MAGQGTIGLEIMEDI-PDVDTVIVPVGGGGLISGVASAAKQINPNVKVIGV 181 (380)
T ss_pred HHHHHHHHHHHHhc-CCEecCCCCChhh-hhhhHHHHHHHHHhC-CCCCEEEEEeChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 99999999998886 7899999999998 799999999999999 57999999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCC-----CCcccCccCCCC---CccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHH
Q 023801 161 EPTESPVLS----GGKP-----GPHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228 (277)
Q Consensus 161 ~~~~~~~~~----~~~~-----~~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 228 (277)
||++++++. .+++ ..+.++|++... .++.+..+++|+++.|+|+|+.++++.|++++|+++||++|++
T Consensus 182 e~~~~~~~~~~~~~g~~~~~~~~~~~a~g~~~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~gi~~e~s~a~~ 261 (380)
T TIGR01127 182 EAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNIIKEYVDDVVTVDEEEIANAIYLLLERHKILAEGAGAAG 261 (380)
T ss_pred EECCChHHHHHHHcCCceecCCCCCeecchhCCCccHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEechHHHHH
Confidence 999997653 2332 234456666432 2334556889999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHHHh
Q 023801 229 AAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 269 (277)
Q Consensus 229 laa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 269 (277)
++++++.... .++++||+|+ +||+.+.| +|+.++..
T Consensus 262 laa~~~~~~~--~~~~~vv~i~-sGGn~d~d--~l~~vi~~ 297 (380)
T TIGR01127 262 VAALLEQKVD--VKGKKIAVVL-SGGNIDLN--LLNKIIEK 297 (380)
T ss_pred HHHHHhCccc--cCCCeEEEEe-CCCCCCHH--HHHHHHHH
Confidence 9999864321 3678999999 78995544 66665443
No 22
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=1.1e-49 Score=352.67 Aligned_cols=247 Identities=23% Similarity=0.268 Sum_probs=214.0
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.++|.++.++|.. +.||++|+||||+|+|++|+++|++|+||||+++++.|+.+++.|||+|+.+++ +|
T Consensus 64 K~RgA~~~l~~a~~~~~~----~~VV~aSsGN~G~alA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~--~~ 137 (349)
T PRK08813 64 KVRGALNALLAGLERGDE----RPVICASAGNHAQGVAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQHGN--SY 137 (349)
T ss_pred HHHHHHHHHHHHHHcCCC----CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CH
Confidence 899999999999999874 249999999999999999999999999999999999999999999999999985 78
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+++++++. +++|++||+||.+ ++||+|+++||++|. ||+||+|+|+||+++|++.++|+ +.+|||||
T Consensus 138 ~~a~~~a~~la~~~-g~~~v~~~~np~~-i~G~~Tig~EI~e~~---pD~VvvpvGgGGliaGia~~lk~--~~~rVigV 210 (349)
T PRK08813 138 DEAYAFARELADQN-GYRFLSAFDDPDV-IAGQGTVGIELAAHA---PDVVIVPIGGGGLASGVALALKS--QGVRVVGA 210 (349)
T ss_pred HHHHHHHHHHHHhc-CCEEcCccCChHH-HHHHHHHHHHHHcCC---CCEEEEEeCccHHHHHHHHHHhc--CCCEEEEE
Confidence 99999999999886 8899999999998 899999999999874 79999999999999999999996 46899999
Q ss_pred ecCCCCccC---CCC-----CCCcccCccCCC---CCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHH
Q 023801 161 EPTESPVLS---GGK-----PGPHKIQGIGAG---FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAA 229 (277)
Q Consensus 161 ~~~~~~~~~---~~~-----~~~~~~~gl~~~---~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~al 229 (277)
||++++++. .++ +..+.++|++.. ..++.+..+++|+++.|+|+|+.++++.|++++|+++||++|+++
T Consensus 211 qpega~~~~~s~~g~~~~~~~~~tiadgl~~~~p~~~~~~i~~~~vd~vv~Vsd~ei~~a~~~l~~~~gl~vE~aga~al 290 (349)
T PRK08813 211 QVEGVDSMARAIRGDLREIAPVATLADGVKVKIPGFLTRRLCSSLLDDVVIVREAELRETLVRLALEEHVIAEGAGALAL 290 (349)
T ss_pred EECCCchHHHHHcCCCcccCCCCceecccccCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEEEcHHHHH
Confidence 999987642 122 123556777643 234455678899999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHHHh
Q 023801 230 AAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 269 (277)
Q Consensus 230 aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 269 (277)
++++++ ++++|++|+ +|||.+++ .+.+++..
T Consensus 291 Aa~~~~------~~~~v~~vl-sGgN~d~~--~~~~~~~~ 321 (349)
T PRK08813 291 AAGRRV------SGKRKCAVV-SGGNIDAT--VLATLLSE 321 (349)
T ss_pred HHHHHh------CCCCEEEEE-CCCCCCHH--HHHHHHHh
Confidence 998753 457899999 99995544 66666553
No 23
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=1.5e-49 Score=355.05 Aligned_cols=247 Identities=19% Similarity=0.208 Sum_probs=215.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++..+|.+++++|. ++||++|+||||+|+|++|+++|++|+||||+++++.|+.+++.|||+|+.+++ ++
T Consensus 88 KdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~v~~--~~ 160 (347)
T PRK08329 88 KDRGTYVTVAKLKEEGI-----NEVVIDSSGNAALSLALYSLSEGIKVHVFVSYNASKEKISLLSRLGAELHFVEG--DR 160 (347)
T ss_pred HHHHHHHHHHHHHHcCC-----CEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECC--CH
Confidence 89999999999999987 679999999999999999999999999999999999999999999999999986 46
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcC------CC
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN------PN 154 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~------~~ 154 (277)
+++.+.+.+++++. +++|++++.||.+ ++||+|+++||++|++ .||+||+|+|+||+++|++++|+++. +.
T Consensus 161 ~~~~~~a~~l~~~~-~~~~~~~~~np~~-~eG~~t~~~Ei~eql~-~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~ 237 (347)
T PRK08329 161 MEVHEEAVKFSKRN-NIPYVSHWLNPYF-LEGTKTIAYEIYEQIG-VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKM 237 (347)
T ss_pred HHHHHHHHHHHHhc-CCeeccCCCCchh-hccchhHHHHHHHHcC-CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCC
Confidence 77778888888775 6788999999998 8999999999999995 89999999999999999999999863 56
Q ss_pred cEEEEEecCCCCccCC-CCCCCcccCccCCCCCcc-----CccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHH
Q 023801 155 IKLYGIEPTESPVLSG-GKPGPHKIQGIGAGFVPG-----VLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228 (277)
Q Consensus 155 ~~vigV~~~~~~~~~~-~~~~~~~~~gl~~~~~~~-----~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 228 (277)
+||++||+++++++.. .+...+.+++++.+..+. .+.+++.+.++.|+|+|++++++.|++ +||++||+||++
T Consensus 238 p~ii~Vq~~g~~~~~~~~~~~~t~a~gi~i~~~~~~~~~~~~l~~~~g~~~~V~d~e~~~a~~~l~~-~Gi~vepssa~a 316 (347)
T PRK08329 238 PKLVAVQAEGYESLCKRSKSENKLADGIAIPEPPRKEEMLRALEESNGFCISVGEEETRAALHWLRR-MGFLVEPTSAVA 316 (347)
T ss_pred CEEEEEecCCCchHHhccCCCCceeeeEEeCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHh-cCceECccHHHH
Confidence 8999999999876643 223445667777654332 233566778999999999999999986 799999999999
Q ss_pred HHHHHHHHhcCC-CCCCeEEEEecCCCCCCc
Q 023801 229 AAAAIEIAKRPE-NAGKLIVVIFPSFGERYL 258 (277)
Q Consensus 229 laa~~~~~~~~~-~~~~~vv~i~~~gG~~~~ 258 (277)
+++++++.+++. .++++||+++|++|.|++
T Consensus 317 ~Aa~~~l~~~g~i~~~~~Vv~~~TG~glK~~ 347 (347)
T PRK08329 317 LAAYWKLLEEGLIEGGSKVLLPLSGSGLKNL 347 (347)
T ss_pred HHHHHHHHHhCCCCCCCeEEEEeCCCCccCC
Confidence 999999999876 478899999988888875
No 24
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=5.1e-50 Score=365.11 Aligned_cols=257 Identities=24% Similarity=0.318 Sum_probs=217.2
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.+++..+.+.+. .+ .||++|+||||+|+|++|+++|++|+||||+.+++.|+++++.|||+|+++++ ++
T Consensus 56 K~Rga~~~i~~~~~~~~-~~---gvv~aSsGN~g~a~A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~--~~ 129 (406)
T PRK06382 56 KSRGAVFKFSKLSEDEL-RN---GVITASAGNHAQGVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGR--DY 129 (406)
T ss_pred HHHHHHHHHHhcchhcc-CC---eEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECC--CH
Confidence 79999999999887653 33 49999999999999999999999999999999999999999999999999985 68
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+++++++. +++|++||+||.+ ++||+|+++||++|+ +.||+||+|+|+||+++|+++++|+.+|++|||||
T Consensus 130 ~~a~~~a~~la~~~-~~~~v~~~~~~~~-i~g~~t~~~Ei~eq~-~~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigV 206 (406)
T PRK06382 130 DEAHRYADKIAMDE-NRTFIEAFNDRWV-ISGQGTIGLEIMEDL-PDLDQIIVPVGGGGLISGIALAAKHINPNVKIIGI 206 (406)
T ss_pred HHHHHHHHHHHHhc-CCEecCccCChHH-HHHHHHHHHHHHHhc-CCCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 89999999998886 7899999999988 889999999999999 57999999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCC-----CCcccCccCCCC---CccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHH
Q 023801 161 EPTESPVLS----GGKP-----GPHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228 (277)
Q Consensus 161 ~~~~~~~~~----~~~~-----~~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 228 (277)
||++++++. .+++ ..+.++|++.+. .++.+..+++|+++.|+|+|++++++.|++++|+++||++|++
T Consensus 207 e~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~ei~~a~~~l~~~~gi~~epsga~~ 286 (406)
T PRK06382 207 ESELSDSMKASLREGKIVAHTSGVSICDGISVKYPGDLTFDIAKNYVDDIVTVTEESVSKAIYKLFEREKIVAEPSGAVG 286 (406)
T ss_pred EECCChHHHHHHHcCCceecCCCCCccccccCCCccHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHHcCceechHHHHH
Confidence 999998752 3332 234567777643 2334556889999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEecCCCCCCc---chhccHHHHHh
Q 023801 229 AAAAIEIAKRPENAGKLIVVIFPSFGERYL---SSVLFESVRKE 269 (277)
Q Consensus 229 laa~~~~~~~~~~~~~~vv~i~~~gG~~~~---~~~~~~~~~~~ 269 (277)
+++++.. +. ..++++||+|+ +||+.++ +..+.+.|...
T Consensus 287 laal~~~-~~-~~~~~~Vv~i~-sGGn~d~~~~~~~~~~~~~~~ 327 (406)
T PRK06382 287 LAAIMEG-KV-DVKGKKVAIVV-SGGNINPLLMSKIIYKELENL 327 (406)
T ss_pred HHHHHhc-cc-cCCCCEEEEEe-CCCCCCHHHHHHHHHHHHHhc
Confidence 9877542 21 13577899999 8999543 33444444333
No 25
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=1.6e-49 Score=369.25 Aligned_cols=258 Identities=23% Similarity=0.307 Sum_probs=221.9
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.+++.++.+... + +.||++|+||||+++|++|+++|++|+||||+++|..|++.++.|||+|+.+++ +|
T Consensus 51 K~RgA~n~i~~l~~~~~-~---~gvV~aSaGNha~avA~aa~~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~~g~--~~ 124 (504)
T PRK09224 51 KLRGAYNKMAQLTEEQL-A---RGVITASAGNHAQGVALSAARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGD--SF 124 (504)
T ss_pred hHHHHHHHHHhhhHHhc-C---CEEEEECcCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CH
Confidence 89999999998764321 2 469999999999999999999999999999999999999999999999999985 78
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+.+++++. +++|++||+||.+ ++||+|+++||++|++..||+||+|+|||||++|++.++|...|++|||||
T Consensus 125 ~~a~~~a~~l~~~~-g~~~v~~f~~~~~-i~G~gTi~~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigV 202 (504)
T PRK09224 125 DEAYAHAIELAEEE-GLTFIHPFDDPDV-IAGQGTIAMEILQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGV 202 (504)
T ss_pred HHHHHHHHHHHHhc-CCEEeCCCCCcHH-HHhHHHHHHHHHHhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 99999999998885 7899999999998 899999999999999655999999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCCC-----CcccCccCCCC---CccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHH
Q 023801 161 EPTESPVLS----GGKPG-----PHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228 (277)
Q Consensus 161 ~~~~~~~~~----~~~~~-----~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 228 (277)
||++++++. .+++. .+.++|++... .++.+..+++|+++.|+|+|+.++++.|++++|+++||++|++
T Consensus 203 e~~~~~~~~~s~~~g~~~~~~~~~~~adg~av~~~g~~~~~~~~~~vd~~v~Vsd~ei~~a~~~l~~~~~~~~epagA~~ 282 (504)
T PRK09224 203 EPEDSACLKAALEAGERVDLPQVGLFADGVAVKRIGEETFRLCQEYVDDVITVDTDEICAAIKDVFEDTRSIAEPAGALA 282 (504)
T ss_pred EECCChHHHHHHhcCCCccCCCCCcccCcccCCCccHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCeEEcHHHHHH
Confidence 999998763 23321 23346665433 2344567899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHHHh
Q 023801 229 AAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 269 (277)
Q Consensus 229 laa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 269 (277)
+++++++.++...++++||+|+ +|||-+++ .++++.+.
T Consensus 283 lAal~~~~~~~~~~g~~vv~i~-sG~n~~~~--~l~~~~~r 320 (504)
T PRK09224 283 LAGLKKYVAQHGIEGETLVAIL-SGANMNFD--RLRYVAER 320 (504)
T ss_pred HHHHHHhhhhcCCCCCeEEEEE-CCCCCCHH--HHHHHHHH
Confidence 9999998877655688999999 88995555 55554443
No 26
>PLN02970 serine racemase
Probab=100.00 E-value=8.9e-50 Score=354.16 Aligned_cols=249 Identities=20% Similarity=0.232 Sum_probs=210.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.++|.++.+++. .++||++|+||||+|+|++|+++|++|+||||+++++.|+.+|+.|||+|+.+++ ++
T Consensus 58 KdRga~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~--~~ 131 (328)
T PLN02970 58 KFRGACNAIFSLSDDQA----EKGVVTHSSGNHAAALALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEP--TV 131 (328)
T ss_pred HHHHHHHHHHHhhHhhc----CCeEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCC--CH
Confidence 89999999999986554 1469999999999999999999999999999999999999999999999999995 67
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+.+.+.+++++++. +++|++||+||.+ ++||+|+++||++|++ .||+||+|+|+||+++|++++||+.+|++|||+|
T Consensus 132 ~~~~~~a~~la~~~-g~~~~~~~~n~~~-~~g~~t~g~Ei~~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~V 208 (328)
T PLN02970 132 ESREAVAARVQQET-GAVLIHPYNDGRV-ISGQGTIALEFLEQVP-ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAA 208 (328)
T ss_pred HHHHHHHHHHHHhc-CCEEeCCCCCcch-hhehHHHHHHHHHhcc-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEE
Confidence 88888898888774 8899999999988 7899999999999994 7999999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCC-----CCcccCccCCC--CCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHH
Q 023801 161 EPTESPVLS----GGKP-----GPHKIQGIGAG--FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAA 229 (277)
Q Consensus 161 ~~~~~~~~~----~~~~-----~~~~~~gl~~~--~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~al 229 (277)
||++++++. .+++ ..+..++++.+ ..++....+.+|+++.|+|+|++++++.|++++|+++||++|+++
T Consensus 209 ep~~~~~~~~s~~~g~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~la~~~gi~ve~s~aa~l 288 (328)
T PLN02970 209 EPKGADDAAQSKAAGEIITLPVTNTIADGLRASLGDLTWPVVRDLVDDVITVDDKEIIEAMKLCYERLKVVVEPSGAIGL 288 (328)
T ss_pred EECCCcHHHHHHHcCCceeCCCCCCccccccCCcCHHHHHHHHhhCCEEEEECHHHHHHHHHHHHHhcCcEEeHHHHHHH
Confidence 999997653 2221 22344555432 112334467789999999999999999999999999999999999
Q ss_pred HHHHHHHhc-CC-CC-CCeEEEEecCCCCCCcc
Q 023801 230 AAAIEIAKR-PE-NA-GKLIVVIFPSFGERYLS 259 (277)
Q Consensus 230 aa~~~~~~~-~~-~~-~~~vv~i~~~gG~~~~~ 259 (277)
+++++...+ +. .+ +++||+++ ||||.+++
T Consensus 289 aaa~~~~~~~~~~~~~~~~vv~v~-~Ggn~~~~ 320 (328)
T PLN02970 289 AAALSDSFRSNPAWKGCKNVGIVL-SGGNVDLG 320 (328)
T ss_pred HHHHhCcccccccccCCCeEEEEE-CCCCCCHH
Confidence 998764332 22 23 47888888 88996655
No 27
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=9.3e-50 Score=356.71 Aligned_cols=251 Identities=21% Similarity=0.264 Sum_probs=211.5
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKG 79 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~ 79 (277)
|||+|.++|.+++++|. ++||++|+||||+|+|++|+++|++|+||||++ .++.|+.+++.|||+|+.+++ +
T Consensus 59 KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~AlA~~aa~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~--~ 131 (351)
T PRK06352 59 KDRGMVMAVAKAKEEGA-----EAVICASTGNTSAAAAAYATRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQG--N 131 (351)
T ss_pred HHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEECC--C
Confidence 89999999999999886 579999999999999999999999999999997 589999999999999999985 6
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCC-----
Q 023801 80 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPN----- 154 (277)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~----- 154 (277)
++++.+.+++++++. ++++++ +.||.+ ++||+|+++||++|++..||+||+|+|+||+++|++++|+++++.
T Consensus 132 ~~~~~~~a~~~~~~~-~~~~~~-~~n~~~-~~G~~t~~~EI~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~ 208 (351)
T PRK06352 132 FDEALKSVRELAETE-AVTLVN-SVNPYR-LEGQKTAAFEICEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGL 208 (351)
T ss_pred HHHHHHHHHHHHHhc-Cccccc-CCCccc-eeeHHHHHHHHHHHcCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCC
Confidence 788888999988875 666665 458888 789999999999999767999999999999999999999998776
Q ss_pred cEEEEEecCCCCccCCCCCCC---cccCccCCCC-CccCccccc----cCeEEEeCHHHHHHHHHHHHHHcCCeeeccHH
Q 023801 155 IKLYGIEPTESPVLSGGKPGP---HKIQGIGAGF-VPGVLEVNI----IDEVVQVSSDEAIETAKLLALKEGLFVGISSG 226 (277)
Q Consensus 155 ~~vigV~~~~~~~~~~~~~~~---~~~~gl~~~~-~~~~~~~~~----~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg 226 (277)
+|||+|||++++++..+++.. +..+++..+. ..+.+.... .+.++.|+|+|++++++.|++++||++||+||
T Consensus 209 ~~vi~Vep~g~~~~~~g~~~~~~~~ia~~l~~~~~~~~~~~~~~~d~~~g~~~~V~d~e~~~a~r~la~~eGi~vepssa 288 (351)
T PRK06352 209 PRMHGFEAEGAAAIVQGKPIDNPETIATAIRIGNPASWGLAEAARDESGGYIHSVTDDEIVNAYKKIAAQDGVFIEPGSA 288 (351)
T ss_pred CEEEEEeeCCCCHHHhCCCcCCCCcceeEEEeCCCCcHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhcCceEchhHH
Confidence 899999999997665544421 2223433221 111122222 33589999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC-CCCCeEEEEecCCCCCCcchh
Q 023801 227 GAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSSV 261 (277)
Q Consensus 227 ~alaa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~~ 261 (277)
+++++++++++++. .++++||+++|++|+||+++.
T Consensus 289 aalAa~~~~~~~~~~~~~~~Vv~v~tg~G~~~~~~~ 324 (351)
T PRK06352 289 ASLAGVIQHVANGTIKKGETVVCVFTGNGLKDPDTA 324 (351)
T ss_pred HHHHHHHHHHHcCCCCCCCcEEEEeCCCCcCChHHH
Confidence 99999999887644 467899999988899999875
No 28
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=1.9e-49 Score=351.68 Aligned_cols=252 Identities=22% Similarity=0.295 Sum_probs=213.0
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.+++.++.+++. .++||++|+||||+|+|++|+.+|++|++|||+++++.|+.+++.|||+|+.+++ ++
T Consensus 55 K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~--~~ 128 (321)
T PRK07048 55 KFRGAYNALSQFSPEQR----RAGVVTFSSGNHAQAIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDR--YT 128 (321)
T ss_pred eHHHHHHHHHhhhHhhc----CCcEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CH
Confidence 89999999999886443 1459999999999999999999999999999999999999999999999999995 56
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+++++++. +++|++||+|+.+ ++||+|+++||++|+ +.||+||+|+|+||+++|++.++|+.+|+++||+|
T Consensus 129 ~~~~~~a~~l~~~~-g~~~~~~~~~~~~-~~g~~t~~~EI~~q~-~~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigv 205 (321)
T PRK07048 129 EDREEIGRRLAEER-GLTLIPPYDHPHV-IAGQGTAAKELFEEV-GPLDALFVCLGGGGLLSGCALAARALSPGCKVYGV 205 (321)
T ss_pred HHHHHHHHHHHHhc-CCEEECCCCCcch-hhccchHHHHHHhhc-CCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 77888888888886 7899999999988 799999999999999 48999999999999999999999999999999999
Q ss_pred ecCCCCcc----CCCCC-----CCcccCccCCCC---CccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHH
Q 023801 161 EPTESPVL----SGGKP-----GPHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228 (277)
Q Consensus 161 ~~~~~~~~----~~~~~-----~~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 228 (277)
||++++++ ..++. ..+..+++.... ..+.+..+++|+++.|+|+|++++++.|++++|+++||+++++
T Consensus 206 ep~~~~~~~~s~~~g~~~~~~~~~tia~g~~~~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~eps~a~~ 285 (321)
T PRK07048 206 EPEAGNDGQQSFRSGEIVHIDTPRTIADGAQTQHLGNYTFPIIRRLVDDIVTVSDAELVDAMRFFAERMKIVVEPTGCLG 285 (321)
T ss_pred eeCCChhHHHHHHcCCcccCCCCCCcccccccCCccHHHHHHHHHhCCceEEECHHHHHHHHHHHHHhCCceeccHHHHH
Confidence 99998753 22322 122334443211 1223345789999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHH
Q 023801 229 AAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESV 266 (277)
Q Consensus 229 laa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~ 266 (277)
+++++++.++ .++++||+|+ |||+.+++ .|.++
T Consensus 286 laa~~~~~~~--~~~~~vv~i~-tGGn~~~~--~~~~~ 318 (321)
T PRK07048 286 AAAALRGKVP--LKGKRVGVII-SGGNVDLA--RFAAL 318 (321)
T ss_pred HHHHHhCchh--cCCCeEEEEe-CCCCCCHH--HHHHH
Confidence 9999986554 3678999999 78997655 44443
No 29
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=3.8e-49 Score=349.94 Aligned_cols=254 Identities=23% Similarity=0.299 Sum_probs=212.6
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.+++.++.+.... ++||++|+||||+|+|++|+.+|++|+||||++.++.|+.+++.|||+|+.+++ ++
T Consensus 58 KdR~a~~~i~~~~~~~~~----~~vv~~SsGN~g~alA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~ 131 (333)
T PRK08638 58 KIRGAFNKLSSLTDAEKR----KGVVACSAGNHAQGVALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGD--NF 131 (333)
T ss_pred HHHHHHHHHHhccHHhcC----CeEEEeCCcHHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEECc--CH
Confidence 899999999998764331 469999999999999999999999999999999999999999999999999984 67
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+++++++. +++|++||+||.+ ++||+++++||++|+ ++||+||+|+|+||+++|++.+||+.+|++|||+|
T Consensus 132 ~~~~~~a~~~a~~~-g~~~~~~~~~~~~-~~g~~t~a~Ei~~q~-~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigV 208 (333)
T PRK08638 132 NDTIAKVEEIVEEE-GRTFIPPYDDPKV-IAGQGTIGLEILEDL-WDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGV 208 (333)
T ss_pred HHHHHHHHHHHHhc-CCEEcCcCCCcch-hccccHHHHHHHhhc-CCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 88889999998886 7899999999998 799999999999999 57999999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCCCC-----cccCccCCCCCccCc----cccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHH
Q 023801 161 EPTESPVLS----GGKPGP-----HKIQGIGAGFVPGVL----EVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 227 (277)
Q Consensus 161 ~~~~~~~~~----~~~~~~-----~~~~gl~~~~~~~~~----~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~ 227 (277)
||++++++. .+++.. +..++++.. .|..+ ..+++|+++.|+|+|+++++++|++++|+++||++|+
T Consensus 209 ep~g~~~~~~s~~~g~~~~~~~~~ti~~gl~~~-~p~~~~~~~~~~~~d~~v~Vsd~ea~~a~~~l~~~~gi~~e~sgA~ 287 (333)
T PRK08638 209 QSENVHGMAASFYAGEITTHRTTGTLADGCDVS-RPGNLTYEIVRELVDDIVLVSEDEIRNAMKDLIQRNKVVTEGAGAL 287 (333)
T ss_pred EECCCchHHHHHHCCCcccCCCCCCeeccccCC-CccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeechhHHH
Confidence 999987543 333322 223444332 23322 2478999999999999999999999999999999888
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHH
Q 023801 228 AAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVR 267 (277)
Q Consensus 228 alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~ 267 (277)
+++++.........++++||+|+ +|||.+++ .|.+++
T Consensus 288 ~~Aa~~~~~~~~~~~~~~vv~v~-~Ggn~~~~--~~~~~~ 324 (333)
T PRK08638 288 ATAALLSGKLDQYIQNKKVVAII-SGGNVDLS--RVSQIT 324 (333)
T ss_pred HHHHHHhCCcccccCCCcEEEEE-CCCCCCHH--HHHHHH
Confidence 88776643222224678899999 78998877 555554
No 30
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=2.2e-49 Score=362.21 Aligned_cols=257 Identities=23% Similarity=0.321 Sum_probs=216.5
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC-CCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD-PAKG 79 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~-~~~~ 79 (277)
|||+|.++|.++.+ +... +.||++|+||||+++|++|+++|++|+||||+.+++.|+..++.|||+|+.+. ...+
T Consensus 56 K~RgA~~~i~~l~~-~~~~---~~Vv~aSsGN~g~alA~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~vv~v~~~g~~ 131 (420)
T PRK08639 56 KLRGAYNAISQLSD-EELA---AGVVCASAGNHAQGVAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGDT 131 (420)
T ss_pred HHHHHHHHHHhCCH-HhhC---CEEEEECccHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHcCCCeeEEEEeCcC
Confidence 89999999998532 3322 46999999999999999999999999999999999999999999999754332 1147
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCC--CCEEEEecCCchhHHHHHHHHhhcCCCcEE
Q 023801 80 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGR--IDALVSGIGTGGTITGAGKFLKEKNPNIKL 157 (277)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~--~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~v 157 (277)
++++++.+.+++++. +++|++||+||.+ ++||+|+|+||++|+++. ||+||+|+|+||+++|++.++|+.+|++||
T Consensus 132 ~~~a~~~a~~~a~~~-g~~~~~~~~~~~~-~~G~~tig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~v 209 (420)
T PRK08639 132 FDDSAAAAQEYAEET-GATFIPPFDDPDV-IAGQGTVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKI 209 (420)
T ss_pred HHHHHHHHHHHHHhc-CCcccCCCCChhH-hcchhHHHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEE
Confidence 899999999998886 7899999999988 799999999999999655 999999999999999999999999999999
Q ss_pred EEEecCCCCccC----CCCC-----CCcccCccCCCCC---ccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccH
Q 023801 158 YGIEPTESPVLS----GGKP-----GPHKIQGIGAGFV---PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISS 225 (277)
Q Consensus 158 igV~~~~~~~~~----~~~~-----~~~~~~gl~~~~~---~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~s 225 (277)
|||||++++++. .+++ ..+.++|++.... ++.+..+++|+++.|+|+|+.++++.|++++|+++||++
T Consensus 210 igVep~~~~~~~~s~~~g~~~~~~~~~t~a~gi~v~~~g~~~~~~~~~~vd~~v~V~d~ei~~a~~~l~~~~gi~~e~sg 289 (420)
T PRK08639 210 IGVEPAGAASMKAALEAGKPVTLEKIDKFVDGAAVARVGDLTFEILKDVVDDVVLVPEGAVCTTILELYNKEGIVAEPAG 289 (420)
T ss_pred EEEEECCCCcHHHHHhCCCceeCCCCCCeecccccCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceecchH
Confidence 999999998763 2332 2345677765433 334557789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHHH
Q 023801 226 GGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRK 268 (277)
Q Consensus 226 g~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~ 268 (277)
|+++++++++.+. .++++||+|+ |||+.+++ .+.+++.
T Consensus 290 a~~lAal~~~~~~--~~~~~vv~v~-sGgn~d~~--~~~~~~~ 327 (420)
T PRK08639 290 ALSIAALELYKDE--IKGKTVVCVI-SGGNNDIE--RMPEIKE 327 (420)
T ss_pred HHHHHHHHhhhhh--cCCCeEEEEe-CCCCCCHH--HHHHHHH
Confidence 9999999886543 4788999999 89996655 5555543
No 31
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=4.3e-49 Score=349.28 Aligned_cols=256 Identities=20% Similarity=0.262 Sum_probs=215.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.++|.+++++|.. +.||++|+||||+|+|++|+++|++|+||||+.+++.|+.+|+.|||+|+.+++ ++
T Consensus 50 K~R~a~~~i~~a~~~~~~----~gvv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~--~~ 123 (322)
T PRK07476 50 KLRGATNALLSLSAQERA----RGVVTASTGNHGRALAYAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGR--SQ 123 (322)
T ss_pred hHHHHHHHHHhhhhhhhC----CeEEEECCChHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECC--CH
Confidence 899999999999998872 349999999999999999999999999999999999999999999999999985 57
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+.+++++. +++|++||+||.+ ++||+|+++||++|+ +++|+||+|+|+||+++|++++||..+|++|||+|
T Consensus 124 ~~~~~~a~~~~~~~-g~~~~~~~~n~~~-~~g~~t~~~Ei~~Q~-~~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigV 200 (322)
T PRK07476 124 DDAQAEVERLVREE-GLTMVPPFDDPRI-IAGQGTIGLEILEAL-PDVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGV 200 (322)
T ss_pred HHHHHHHHHHHHhc-CCEEeCCCCCcce-eechhHHHHHHHHhC-cCCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 88888899988876 7799999999998 799999999999999 47999999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCC-----CCcccCccCCC-----CCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHH
Q 023801 161 EPTESPVLS----GGKP-----GPHKIQGIGAG-----FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSG 226 (277)
Q Consensus 161 ~~~~~~~~~----~~~~-----~~~~~~gl~~~-----~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg 226 (277)
||++++++. .+++ ..+..++++.+ ..+..+....+|+++.|+|+|++++++.|++++|+++||+++
T Consensus 201 e~~~~~~~~~s~~~g~~~~~~~~~t~a~~l~~~~~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~ve~a~a 280 (322)
T PRK07476 201 SMERGAAMHASLAAGRPVQVEEVPTLADSLGGGIGLDNRYTFAMCRALLDDVVLLDEAEIAAGIRHAYREERLVVEGAGA 280 (322)
T ss_pred EECCchHHHHHHHcCCceeCCCCCCccccccccccCCcHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCceEeChhH
Confidence 999887543 2222 22334554322 123345567889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHHHhh
Q 023801 227 GAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEA 270 (277)
Q Consensus 227 ~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~ 270 (277)
++++++++. .....+++||+++ |||+- |...|++++.+.
T Consensus 281 ~~laal~~~--~~~~~~~~Vvvi~-tGg~~--~~~~~~~~~~~~ 319 (322)
T PRK07476 281 VGIAALLAG--KIAARDGPIVVVV-SGANI--DMELHRRIINGE 319 (322)
T ss_pred HHHHHHHhC--CcccCCCcEEEEE-CCCCC--CHHHHHHHHhhh
Confidence 999998832 1112347899999 78884 555777776654
No 32
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=5.6e-49 Score=358.15 Aligned_cols=263 Identities=21% Similarity=0.235 Sum_probs=218.2
Q ss_pred CChhHHHHHHH-----HHHcCCCCCCC----------------cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHH
Q 023801 1 MCRIGYSMISD-----AEAKGLITPGE----------------SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE 59 (277)
Q Consensus 1 ~dR~a~~~v~~-----a~~~g~l~~g~----------------~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~ 59 (277)
|||+|+++|.. ++++|.+.|+. ++||++||||||+|+|++|+.+|++|+||||+++++.
T Consensus 115 K~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~~~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~ 194 (441)
T PRK02991 115 KARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEFRQFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQW 194 (441)
T ss_pred HHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhhhhhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHH
Confidence 79999999986 56889888774 3699999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCC--------CCCEE
Q 023801 60 RRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG--------RIDAL 131 (277)
Q Consensus 60 ~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~--------~~d~i 131 (277)
|+++++.|||+|+.+++ +|+++.+.+++++++.++++|++++++|.+ ++||+|+++||++|+++ .||+|
T Consensus 195 K~~~ir~~GAeVi~~~~--~~~~a~~~A~~la~~~~~~~~~~~~~~~~~-iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~V 271 (441)
T PRK02991 195 KKDKLRSHGVTVVEYEG--DYGVAVEEGRKAAESDPNCYFIDDENSRTL-FLGYAVAGLRLKAQLAEQGIVVDADHPLFV 271 (441)
T ss_pred HHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhcCCeEeCCCCCchhH-HHhHHHHHHHHHHHhhhccCccccCCCCEE
Confidence 99999999999999995 789999999999888766899999987776 89999999999999952 26799
Q ss_pred EEecCCchhHHHHHHHHhhc-CCCcEEEEEecCCCCccC----CCCC-----------CCcccCccCCCCC---ccCccc
Q 023801 132 VSGIGTGGTITGAGKFLKEK-NPNIKLYGIEPTESPVLS----GGKP-----------GPHKIQGIGAGFV---PGVLEV 192 (277)
Q Consensus 132 v~pvG~Gg~~aGi~~~~~~~-~~~~~vigV~~~~~~~~~----~~~~-----------~~~~~~gl~~~~~---~~~~~~ 192 (277)
|+|+|+||+++|++.+||+. .+.+|||+|||++++++. .+++ ..+.++|++.+.. ++.+..
T Consensus 272 vvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga~~~~~s~~~G~~~~~~~~~~g~~~~Tiadgl~~~~~~~~~~~~~~ 351 (441)
T PRK02991 272 YLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGLMTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAME 351 (441)
T ss_pred EEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCChHHHHHHhcCCCcceeccccCCCCcchhhhhcCCCcchhHHHHHH
Confidence 99999999999999999997 688999999999987652 2221 1245677766532 234456
Q ss_pred cccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCC-------C---CCCeEEEEecCCCC-CCcchh
Q 023801 193 NIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE-------N---AGKLIVVIFPSFGE-RYLSSV 261 (277)
Q Consensus 193 ~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~-------~---~~~~vv~i~~~gG~-~~~~~~ 261 (277)
+++|+++.|+|+|++++++.|++++|+++||++|+++++++++.+... . ++++||++. |||+ ++.+
T Consensus 352 ~~vd~~v~VsD~ei~~a~~~L~~~~gi~vEpS~AaalAa~~~l~~~~~~~~~~~l~~~~~~~~vv~~~-~gg~~~~~~-- 428 (441)
T PRK02991 352 RLLDGVYTVSDETLYRLLGLLADTEGIRLEPSALAGMAGPVRVCASVAYLQRHGLSEQLKNATHLVWA-TGGSMVPEE-- 428 (441)
T ss_pred HhCCeEEEECHHHHHHHHHHHHHhcCceeeHHHHHHHHHHHHHHhCHHHHHHcCCccccCCCEEEEEE-CCCCCCCHH--
Confidence 789999999999999999999999999999999999999987654321 1 467888888 5554 3333
Q ss_pred ccHHHHHh
Q 023801 262 LFESVRKE 269 (277)
Q Consensus 262 ~~~~~~~~ 269 (277)
..+.+...
T Consensus 429 ~~~~~~~~ 436 (441)
T PRK02991 429 EMEQYLAK 436 (441)
T ss_pred HHHHHHHh
Confidence 44444443
No 33
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=5.6e-49 Score=357.14 Aligned_cols=251 Identities=24% Similarity=0.230 Sum_probs=216.0
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.++|.+|+++|. ++||++||||||+|+|++|+++|++|+||||+++++.|+.+++.|||+|+.+++ ++
T Consensus 111 KdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~--~~ 183 (394)
T PRK08197 111 KARGLAVGVSRAKELGV-----KHLAMPTNGNAGAAWAAYAARAGIRATIFMPADAPEITRLECALAGAELYLVDG--LI 183 (394)
T ss_pred HHhHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CH
Confidence 89999999999999887 679999999999999999999999999999999999999999999999999996 67
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCC-CCCEEEEecCCchhHHHHHHHHhhc-------C
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG-RIDALVSGIGTGGTITGAGKFLKEK-------N 152 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~-~~d~iv~pvG~Gg~~aGi~~~~~~~-------~ 152 (277)
+++.+.+.+++++. ++++++++.||.+ ++|++|+++||++|++. .||+||+|+|+||+++|++++|+++ .
T Consensus 184 ~~~~~~a~~~~~~~-g~~~~~~~~np~~-ieG~~t~a~Ei~eQl~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~ 261 (394)
T PRK08197 184 SDAGKIVAEAVAEY-GWFDVSTLKEPYR-IEGKKTMGLELAEQLGWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGG 261 (394)
T ss_pred HHHHHHHHHHHHhc-CcccccCCCCccc-hhcHHHHHHHHHHHcCCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCC
Confidence 88888888888776 7899999999998 89999999999999965 4999999999999999999999986 3
Q ss_pred CCcEEEEEecCCCCccC----CCCC-------CCcccCccCCCCCcc--C---ccccccCeEEEeCHHHHHHHHHHHHHH
Q 023801 153 PNIKLYGIEPTESPVLS----GGKP-------GPHKIQGIGAGFVPG--V---LEVNIIDEVVQVSSDEAIETAKLLALK 216 (277)
Q Consensus 153 ~~~~vigV~~~~~~~~~----~~~~-------~~~~~~gl~~~~~~~--~---~~~~~~~~~~~v~d~e~~~a~~~l~~~ 216 (277)
+.+||++||+++++++. .++. ..+..+++..+.... . ...++.+.++.|+|+|++++++.|+++
T Consensus 262 ~~p~ii~Vq~~g~~~l~~~~~~g~~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~~~g~~v~V~d~e~~~a~~~la~~ 341 (394)
T PRK08197 262 KRPRLVAVQAEGCAPIVKAWEEGKEESEFWEDAHTVAFGIRVPKALGDFLVLDAVRETGGCAIAVSDDAILAAQRELARE 341 (394)
T ss_pred CCCeEEEEEeCCCCHHHHHHHcCCCccccCCCCCceehhhhCCCCCCHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHHhc
Confidence 88999999999997653 1211 112234443322111 1 123566789999999999999999999
Q ss_pred cCCeeeccHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCCCCcch
Q 023801 217 EGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSS 260 (277)
Q Consensus 217 ~gi~~~p~sg~alaa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~ 260 (277)
+||++||+||+++++++++.+++. .++++||+++|++|.||+++
T Consensus 342 eGi~vepssaaala~~~~l~~~~~~~~~~~Vv~v~tG~g~k~~~~ 386 (394)
T PRK08197 342 EGLFACPEGAATFAAARQLRESGWLKGDERVVLFNTGSGLKYPDT 386 (394)
T ss_pred CCceECchHHHHHHHHHHHHHcCCcCCCCcEEEEeCCCCcCchhh
Confidence 999999999999999999988765 36789999999999999874
No 34
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=2.6e-49 Score=360.05 Aligned_cols=256 Identities=21% Similarity=0.294 Sum_probs=216.3
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEE---EEeCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL---VLTDPA 77 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v---~~~~~~ 77 (277)
|||+|.++|.++.+ +..+ +.||++|+||||+++|++|+++|++|+||||+.+++.|+.+++.|||++ +..+
T Consensus 47 K~RgA~~~i~~l~~-~~~~---~gvv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~vv~v~~~g-- 120 (409)
T TIGR02079 47 KIRGAYNFLKQLSD-AQLA---KGVVCASAGNHAQGFAYACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVG-- 120 (409)
T ss_pred HHHHHHHHHHhCCH-HhhC---CEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCCeeEEEEeC--
Confidence 79999999987543 2333 3599999999999999999999999999999999999999999999974 3444
Q ss_pred CChHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEE
Q 023801 78 KGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKL 157 (277)
Q Consensus 78 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~v 157 (277)
.+|+++++.+.+++++. +++|++||+||.+ ++||+|+++||++|+++.||+||+|+|+||+++|++.++|+.+|++||
T Consensus 121 ~~~~~a~~~a~~~~~~~-g~~~~~~~~~~~~-~~g~~ti~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~v 198 (409)
T TIGR02079 121 DTFDQCAAAAREHVEDH-GGTFIPPFDDPRI-IEGQGTVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKI 198 (409)
T ss_pred CCHHHHHHHHHHHHHhc-CCEEeCCCCCHhH-hhhhHHHHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEE
Confidence 47899999999998886 7899999999988 889999999999999656999999999999999999999999999999
Q ss_pred EEEecCCCCccC----CCCC-----CCcccCccCCCCCc---cCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccH
Q 023801 158 YGIEPTESPVLS----GGKP-----GPHKIQGIGAGFVP---GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISS 225 (277)
Q Consensus 158 igV~~~~~~~~~----~~~~-----~~~~~~gl~~~~~~---~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~s 225 (277)
|||||++++++. .+++ ..+.++|++....+ +.+...++|+++.|+|+|+.++++.|++++|+++||++
T Consensus 199 igVep~~~~~~~~s~~~g~~~~~~~~~t~a~g~~v~~~g~~~~~~~~~~vd~vv~V~d~e~~~a~~~l~~~~gi~ve~ag 278 (409)
T TIGR02079 199 IGVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAVKRVGDLNFKALKDVPDEVTLVPEGAVCTTILDLYNLEGIVAEPAG 278 (409)
T ss_pred EEEEeCCCCcHHHHHHCCCceecCCCCCeeccccCCCCcHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHhcCceecchH
Confidence 999999998764 2332 13456677654432 23456789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHHHh
Q 023801 226 GGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 269 (277)
Q Consensus 226 g~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 269 (277)
|+++++++++.++ .++++||+|+ +|||.+++ .+.+++..
T Consensus 279 aa~lAa~~~~~~~--~~~~~Vv~il-sGgn~d~~--~~~~~~~~ 317 (409)
T TIGR02079 279 ALSIAALERLGEE--IKGKTVVCVV-SGGNNDIE--RTEEIRER 317 (409)
T ss_pred HHHHHHHHhhhhh--cCCCeEEEEE-CCCCCCHH--HHHHHHHH
Confidence 9999999886543 4688999999 89996554 55555443
No 35
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=3.1e-49 Score=360.61 Aligned_cols=247 Identities=25% Similarity=0.372 Sum_probs=215.3
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.+++.++.+++. .++||++|+||||+++|++|+++|++|+||||++++..|+++++.|||+|+.++. ++
T Consensus 53 K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~~--~~ 126 (404)
T PRK08198 53 KIRGAYNKIASLSEEER----ARGVVAASAGNHAQGVAYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHGD--VY 126 (404)
T ss_pred HHHHHHHHHHhccHhhc----CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CH
Confidence 89999999999986654 2579999999999999999999999999999999999999999999999999984 78
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++++.+.+++++. +++|++||+||.+ ++||+|+|+||++|+ +++|+||+|+|+||+++|++.+||+.+|++|||||
T Consensus 127 ~~~~~~a~~~~~~~-g~~~~~~~~~~~~-~~g~~t~a~EI~~q~-~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigV 203 (404)
T PRK08198 127 DEALAKAQELAEET-GATFVHPFDDPDV-IAGQGTIGLEILEDL-PDVDTVVVPIGGGGLISGVATAVKALRPEVRVIGV 203 (404)
T ss_pred HHHHHHHHHHHHhc-CCEecCCCCCccH-HHHHHHHHHHHHHhC-CCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEE
Confidence 99999999998886 7899999999988 799999999999999 57999999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCC-----CCcccCccCCCC---CccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHH
Q 023801 161 EPTESPVLS----GGKP-----GPHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228 (277)
Q Consensus 161 ~~~~~~~~~----~~~~-----~~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 228 (277)
||++++++. .+++ ..+..+|++... .++.+..+++|+++.|+|+|+.++++.|++++|+++||++|++
T Consensus 204 e~~~~~~~~~~~~~g~~~~~~~~~t~a~g~~v~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~g~~~e~sga~~ 283 (404)
T PRK08198 204 QAEGAPAMPESLAAGRPVELESVDTIADGIAVKRPGDLTFEIIRELVDDVVTVSDEEIARAILLLLERAKLVVEGAGAVS 283 (404)
T ss_pred EeCCChHHHHHHHcCCCEecCCCCccccccccCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEehHHHHH
Confidence 999998763 2332 123345554322 2344556889999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEecCCCCCCcc
Q 023801 229 AAAAIEIAKRPENAGKLIVVIFPSFGERYLS 259 (277)
Q Consensus 229 laa~~~~~~~~~~~~~~vv~i~~~gG~~~~~ 259 (277)
+++++++.+. .++++||+|+ +||+.+++
T Consensus 284 lAal~~~~~~--~~~~~vv~vl-~ggn~~~~ 311 (404)
T PRK08198 284 VAALLSGKLD--VKGKKVVAVL-SGGNIDVL 311 (404)
T ss_pred HHHHHhchhh--cCCCeEEEEE-CCCCCCHH
Confidence 9999876532 4678999999 78997665
No 36
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=3.3e-49 Score=350.03 Aligned_cols=254 Identities=23% Similarity=0.288 Sum_probs=216.3
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.++|.++++++...+ .||++|+||||+|+|++|+++|++|+||||+++++.|+++++.|||+|+.+++ ++
T Consensus 52 K~Rga~~~l~~a~~~~~~~~---~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~--~~ 126 (322)
T PRK06110 52 KVRGGLVYFDRLARRGPRVR---GVISATRGNHGQSVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAELIEHGE--DF 126 (322)
T ss_pred HHHHHHHHHHHhhhhcCCCc---eEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CH
Confidence 89999999999998876554 49999999999999999999999999999999999999999999999999974 68
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+.++++++ +++|++|| ||.+ +.||+|+++||++|++ .+|+||+|+|+||+++|++.++++.+|++|||+|
T Consensus 127 ~~~~~~a~~~~~~~-~~~~~~~~-~~~~-~~G~~t~~~Ei~~q~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~V 202 (322)
T PRK06110 127 QAAREEAARLAAER-GLHMVPSF-HPDL-VRGVATYALELFRAVP-DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGV 202 (322)
T ss_pred HHHHHHHHHHHHhc-CCEEcCCC-CChH-HhccchHHHHHHhhCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 88888999988886 78999999 5666 7899999999999994 7999999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCCC-----CcccCccCCCCC-c--cCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHH
Q 023801 161 EPTESPVLS----GGKPG-----PHKIQGIGAGFV-P--GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228 (277)
Q Consensus 161 ~~~~~~~~~----~~~~~-----~~~~~gl~~~~~-~--~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 228 (277)
||++++++. .+++. .+..++++.... + +.+..+++|+++.|+|+|++++++.|++++|+++||+++++
T Consensus 203 ep~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~e~ssaa~ 282 (322)
T PRK06110 203 VSAHAPAYALSFEAGRVVTTPVATTLADGMACRTPDPEALEVIRAGADRIVRVTDDEVAAAMRAYFTDTHNVAEGAGAAA 282 (322)
T ss_pred eeCCChHHHHHHHcCCcccCCCCCCcccccCCCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEehHHHHH
Confidence 999987653 23221 234455543321 1 22335789999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHHH
Q 023801 229 AAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRK 268 (277)
Q Consensus 229 laa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~ 268 (277)
+++++++.+. .++++||+|+ |||+.+++ .|.+++.
T Consensus 283 laa~~~~~~~--~~~~~Vv~i~-tGgn~d~~--~~~~~~~ 317 (322)
T PRK06110 283 LAAALQERER--LAGKRVGLVL-SGGNIDRA--VFARVLA 317 (322)
T ss_pred HHHHHhChhh--hCCCcEEEEE-CCCCCCHH--HHHHHHh
Confidence 9999986554 3678899999 88996655 6666654
No 37
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=4.5e-49 Score=350.18 Aligned_cols=255 Identities=19% Similarity=0.168 Sum_probs=212.4
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.++|.+++++|.+. ++||++|+||||+|+|++|+++|++|+||||+++++.|+++++.|||+|+.++. .
T Consensus 54 K~R~a~~~v~~a~~~g~~~---~~vv~~SsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~---~ 127 (338)
T PRK06608 54 KVRGVLNHLLELKEQGKLP---DKIVAYSTGNHGQAVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNT---R 127 (338)
T ss_pred HHHHHHHHHHHhhhhcCcC---CeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC---H
Confidence 8999999999999999864 469999999999999999999999999999999999999999999999999974 3
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+++ +++ +++||++||+|+.+ ++||++++.||++|++.+||+||+|+|+||+++|++.+++..++.++||+|
T Consensus 128 ~~~~~~a~~-~~~-~~~~~~~~~~~~~~-~~g~~t~a~Ei~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigV 204 (338)
T PRK06608 128 QEAEEKAKE-DEE-QGFYYIHPSDSDST-IAGAGTLCYEALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGS 204 (338)
T ss_pred HHHHHHHHH-HHh-CCCEEcCCCCCHHH-hccHHHHHHHHHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEE
Confidence 566677766 444 47899999999988 789999999999999658999999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCC------CCcccCccCCCCCc---cCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHH
Q 023801 161 EPTESPVLS----GGKP------GPHKIQGIGAGFVP---GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 227 (277)
Q Consensus 161 ~~~~~~~~~----~~~~------~~~~~~gl~~~~~~---~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~ 227 (277)
||.+++++. .+++ ..+..+|++.+... +.+. +.+|+++.|+|+|++++++.|++++|+++||+||+
T Consensus 205 ep~~~~~~~~s~~~g~~~~~~~~~~t~~~gl~~~~~~~~~~~~~-~~~d~~v~Vsd~e~~~a~~~l~~~~gi~vepssaa 283 (338)
T PRK06608 205 EPLNANDAYLSLKNNKIYRLNYSPNTIADGLKTLSVSARTFEYL-KKLDDFYLVEEYEIYYWTAWLTHLLKVICEPSSAI 283 (338)
T ss_pred eeCCChHHHHHHHcCCeEeCCCCCCCeecccCCCCCCHHHHHHH-HhCCCEEEECHHHHHHHHHHHHHHcCcEEchHHHH
Confidence 999987542 2321 13445677653321 2222 34789999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCCC---CcchhccHHHH
Q 023801 228 AAAAAIEIAKRPENAGKLIVVIFPSFGER---YLSSVLFESVR 267 (277)
Q Consensus 228 alaa~~~~~~~~~~~~~~vv~i~~~gG~~---~~~~~~~~~~~ 267 (277)
+++++++++++. .++++||+|+ +||++ |+++.+.++|+
T Consensus 284 ~laa~~~~~~~~-~~~~~Vv~v~-tgg~~d~~~~~~~~~~~~~ 324 (338)
T PRK06608 284 NMVAVVNWLKTQ-SKPQKLLVIL-SGGNIDPILYNELWKEDYL 324 (338)
T ss_pred HHHHHHhhchhh-cCCCeEEEEe-CCCccCHHHHHHHHHHhhh
Confidence 999999886653 3678999999 56764 44444444443
No 38
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=1e-48 Score=357.35 Aligned_cols=252 Identities=19% Similarity=0.229 Sum_probs=217.1
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.++|.+|+++|. ++|+++|+||||+|+|++|+++|++|+||||+++++.|+.+++.|||+|+.+++ +|
T Consensus 121 KdRga~~~v~~A~~~g~-----~~vv~aSsGN~g~alA~~aa~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g--~~ 193 (421)
T PRK07591 121 KDRVVSVALTAARELGF-----TTVACASTGNLANSVAAHAARAGLDSCVFIPADLEAGKIVGTLVYGPTLVAVDG--NY 193 (421)
T ss_pred HHHHHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CH
Confidence 89999999999999987 679999999999999999999999999999999999999999999999999996 68
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCC-CCEEEEecCCchhHHHHHHHHhhc-------C
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGR-IDALVSGIGTGGTITGAGKFLKEK-------N 152 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~-~d~iv~pvG~Gg~~aGi~~~~~~~-------~ 152 (277)
+++.+.+.+++++.+++++++++.||.. ++||+|+++||++|++.. ||+||+|+|+||+++|++++|+++ .
T Consensus 194 d~a~~~a~~~~~~~~~~~~~n~~~~p~~-ieG~~Tia~Ei~eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~ 272 (421)
T PRK07591 194 DDVNRLCSELANEHEGWGFVNINLRPYY-AEGSKTLGYEVAEQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVED 272 (421)
T ss_pred HHHHHHHHHHHHhcCCEEEecCCCCccc-ccchHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccC
Confidence 8899999998887767899999888888 799999999999999654 999999999999999999999997 5
Q ss_pred CCcEEEEEecCCCCccC----CCCC------CCcccCccCCCCCc-----cCccccccCeEEEeCHHHHHHHHHHHHHHc
Q 023801 153 PNIKLYGIEPTESPVLS----GGKP------GPHKIQGIGAGFVP-----GVLEVNIIDEVVQVSSDEAIETAKLLALKE 217 (277)
Q Consensus 153 ~~~~vigV~~~~~~~~~----~~~~------~~~~~~gl~~~~~~-----~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~ 217 (277)
+.+||++|||++++++. .+.. ..+..+++..+... ....+++.+.++.|+|+|++++++.|++.+
T Consensus 273 ~~prii~Vq~~g~~~~~~~~~~g~~~~~~~~~~tia~~l~~~~p~~~~~~~~~i~~~~g~~v~Vsd~ei~~a~~~la~~e 352 (421)
T PRK07591 273 KPVRVFGAQAEGCSPIAQAFKEGRDVVKPVKPNTIAKSLAIGNPADGPYALDIARRTGGAIEDVTDEEIIEGIKLLARTE 352 (421)
T ss_pred CCceEEEEecCCCCHHHHHHHcCCCcccCCCCCchhhheecCCCCCcHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcC
Confidence 78999999999986653 2221 12233444332211 112346677899999999999999999999
Q ss_pred CCeeeccHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCCCCcch
Q 023801 218 GLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSS 260 (277)
Q Consensus 218 gi~~~p~sg~alaa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~ 260 (277)
||++||++|+++++++++.+++. .++++||+++|++|+||++.
T Consensus 353 Gi~~epssaaalAal~~l~~~g~i~~~~~VV~i~tG~G~kd~~~ 396 (421)
T PRK07591 353 GIFTETAGGVTVAVLKKLVEAGKIDPDEETVVYITGNGLKTLEA 396 (421)
T ss_pred CeeecchHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCccCCHHH
Confidence 99999999999999999988776 47889999996679999874
No 39
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=6.5e-49 Score=357.74 Aligned_cols=254 Identities=22% Similarity=0.289 Sum_probs=218.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.+++.++.++.. . +.||++|+||||+|+|++|+++|++|+||||..+++.|+.+++.|||+|+.+++ ++
T Consensus 54 KdR~a~~~i~~~~~~~~-~---~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~--~~ 127 (403)
T PRK07334 54 KERGALNKLLLLTEEER-A---RGVIAMSAGNHAQGVAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGE--TL 127 (403)
T ss_pred hHHHHHHHHHhcCHHHh-C---CcEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECc--CH
Confidence 89999999999875432 1 359999999999999999999999999999999999999999999999999984 68
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++++.+.+++++. +++|++||+||.+ ++||+|+++||++|+ +.||+||+|+|+||+++|+++++|+.+|++||++|
T Consensus 128 ~~~~~~a~~l~~~~-~~~~~~~~~~~~~-~~g~~t~~~Ei~~q~-~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~v 204 (403)
T PRK07334 128 DEARAHARELAEEE-GLTFVHPYDDPAV-IAGQGTVALEMLEDA-PDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGV 204 (403)
T ss_pred HHHHHHHHHHHHhc-CCEecCCCCCHHH-HHhHHHHHHHHHhcC-CCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 88999999998875 7899999999998 799999999999999 57999999999999999999999999999999999
Q ss_pred ecCCCCccCC---CC----CCCcccCccCCC---CCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHH
Q 023801 161 EPTESPVLSG---GK----PGPHKIQGIGAG---FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAA 230 (277)
Q Consensus 161 ~~~~~~~~~~---~~----~~~~~~~gl~~~---~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~ala 230 (277)
||++++++.. +. ...+.++|++.+ ..++.++..++|+++.|+|+|++++++.|++++|+++||++|++++
T Consensus 205 e~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~v~~s~a~~~a 284 (403)
T PRK07334 205 QTELYPSMYAAIKGVALPCGGSTIAEGIAVKQPGQLTLEIVRRLVDDILLVSEADIEQAVSLLLEIEKTVVEGAGAAGLA 284 (403)
T ss_pred EECCCchHHHHHhCCCccCCCCCccceecCCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCEEechHHHHHH
Confidence 9999877631 11 123566787743 3455667788999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHHH
Q 023801 231 AAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRK 268 (277)
Q Consensus 231 a~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~ 268 (277)
+++++.++ .++++||+|+ +||+.+.+ ++.+++.
T Consensus 285 a~~~~~~~--~~~~~vv~i~-~ggn~d~~--~l~~il~ 317 (403)
T PRK07334 285 ALLAYPER--FRGRKVGLVL-SGGNIDTR--LLANVLL 317 (403)
T ss_pred HHHhCchh--cCCCeEEEEE-CCCCCCHH--HHHHHHH
Confidence 99876553 3678999999 66885444 5555543
No 40
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=2.4e-48 Score=347.91 Aligned_cols=255 Identities=22% Similarity=0.247 Sum_probs=214.3
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEeCCCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPAKG 79 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~-~~~~~~~~~~~Ga~v~~~~~~~~ 79 (277)
|||+|.+++.++.++|. ++||++||||||+|+|++|+++|++|+||||+.. ++.|+++++.+||+|+.+++ +
T Consensus 59 KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~alA~~aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~--~ 131 (352)
T PRK06721 59 KDRGMVMAVAKAKEEGS-----EAIICASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEG--N 131 (352)
T ss_pred HHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECC--C
Confidence 89999999999999986 6799999999999999999999999999999975 78999999999999999985 6
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHH----HhhcC-CC
Q 023801 80 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKF----LKEKN-PN 154 (277)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~----~~~~~-~~ 154 (277)
++++.+.+++++++. ++++++ +.||.+ ++||.|+++||++|+++.||+||+|+|+||+++|++.+ +|+.+ |.
T Consensus 132 ~~~~~~~a~~~~~~~-~~~~~~-~~n~~~-~~G~~t~~~Ei~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~ 208 (352)
T PRK06721 132 FDDALKAVRNIAAEE-PITLVN-SVNPYR-IEGQKTAAFEICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKK 208 (352)
T ss_pred HHHHHHHHHHHHHhC-Cceecc-CCCchh-hhhhhhHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCC
Confidence 888888999998886 566665 558887 78999999999999966799999999999999986544 45554 88
Q ss_pred cEEEEEecCCCCccCCCCCC---CcccCccCCCCCccC------ccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccH
Q 023801 155 IKLYGIEPTESPVLSGGKPG---PHKIQGIGAGFVPGV------LEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISS 225 (277)
Q Consensus 155 ~~vigV~~~~~~~~~~~~~~---~~~~~gl~~~~~~~~------~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~s 225 (277)
++||+|||++++++..++.. .+..++++.+. |.. ....++|+++.|+|+|++++++.|+++||+++||++
T Consensus 209 ~~vigVep~~~~~~~~g~~~~~~~tia~~l~~~~-~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~eGi~vepss 287 (352)
T PRK06721 209 PRIHGFEAEGAAAIVKGHVIDEPETIATAIRIGN-PASWSYAVEAAEQSHGEIDMVSDEEILHAYRLLAKSEGVFAEPGS 287 (352)
T ss_pred CeEEEEecCCCChHhhCCcCCCCCceeeccccCC-CCCHHHHHHHHHhcCCEEEEECHHHHHHHHHHHHHhcCcccCchH
Confidence 99999999999877554321 23345554432 211 124578899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-CCCCeEEEEecCCCCCCcchhccHHH
Q 023801 226 GGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSSVLFESV 266 (277)
Q Consensus 226 g~alaa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~~~~~~~ 266 (277)
|+++++++++.+++. .++++||+|+|++|.||++....+.|
T Consensus 288 gaalaa~~~~~~~~~~~~~~~Vv~v~~g~g~k~~~~~~~~~~ 329 (352)
T PRK06721 288 NASLAGVMKHVQSGKIKKGETVVAVLTGNGLKDPDIAISSNT 329 (352)
T ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEeCCCCcCchHHHhhhcc
Confidence 999999999887654 46789999999999999987654433
No 41
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=1.7e-48 Score=344.31 Aligned_cols=252 Identities=20% Similarity=0.236 Sum_probs=211.9
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.++|.++.+... . .+||++|+||||+|+|++|+++|++|+||||+.+++.|+++++.|||+|+.++. ++
T Consensus 50 K~R~a~~~i~~~~~~~~-~---~~vv~aSsGN~g~alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~--~~ 123 (317)
T TIGR02991 50 KLRGATNAVLSLSDTQR-A---AGVVAASTGNHGRALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGR--SQ 123 (317)
T ss_pred HHHHHHHHHHhhhHhcc-C---CeEEEECCCHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCC--CH
Confidence 89999999998875322 1 469999999999999999999999999999999999999999999999999995 67
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+++++++. +++|++||+||.+ ++||+|+++||++|+ +++|+||+|+|+||+++|++++||+.+|.+|||+|
T Consensus 124 ~~~~~~a~~~~~~~-g~~~~~~~~n~~~-~~g~~t~a~Ei~~q~-~~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigv 200 (317)
T TIGR02991 124 DDAQEEVERLVADR-GLTMLPPFDHPDI-VAGQGTLGLEVVEQM-PDLATVLVPLSGGGLASGVAMAVKAARPDTRVIGV 200 (317)
T ss_pred HHHHHHHHHHHHhc-CCEeeCCCCChHH-HhhHHHHHHHHHHhC-CCCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 88888888888876 7899999999998 799999999999999 46899999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCC-----CCcccCccC----C-CCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHH
Q 023801 161 EPTESPVLS----GGKP-----GPHKIQGIG----A-GFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSG 226 (277)
Q Consensus 161 ~~~~~~~~~----~~~~-----~~~~~~gl~----~-~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg 226 (277)
||++++++. .+++ .++.+++++ . +..++.+..+++|+++.|+|+|++++++.|++++|+++||+++
T Consensus 201 ep~~~~~~~~s~~~g~~~~~~~~~tia~~l~~g~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~g~~ve~s~a 280 (317)
T TIGR02991 201 SMERGAAMKASLQAGRPVLVAELPTLADSLGGGIGLDNRVTFAMCKALLDEIVLVSEAEIAAGIRHAYAEEREIVEGAGA 280 (317)
T ss_pred EECCchHHHHHHHcCCcccCCCCCChhhhhhhccCCCCHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCcEEcchHH
Confidence 999887653 2322 233455442 1 1234556678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHH
Q 023801 227 GAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVR 267 (277)
Q Consensus 227 ~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~ 267 (277)
++++++++... .++++||+|+ |||+.+ ...+.+++
T Consensus 281 ~~~Aal~~~~~---~~~~~vvvvl-tG~n~~--~~~~~~~~ 315 (317)
T TIGR02991 281 VGIAALLAGKI---KNPGPCAVIV-SGRNID--MDLHKRII 315 (317)
T ss_pred HHHHHHHcCcc---ccCCcEEEEe-CCCCCC--HHHHHHHH
Confidence 99999874211 2467888888 888844 44555543
No 42
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=2.2e-48 Score=344.06 Aligned_cols=244 Identities=26% Similarity=0.341 Sum_probs=208.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.+++.++.++.. . +.||++|+||||+|+|++|+++|++|+||||..+++.|+.+++.+||+|+.+++ ++
T Consensus 51 KdR~a~~~~~~l~~~~~-~---~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~--~~ 124 (317)
T PRK06815 51 KFRGASNKLRLLNEAQR-Q---QGVITASSGNHGQGVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGG--DA 124 (317)
T ss_pred HHHHHHHHHHhcchhhc-C---ceEEEECCChHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CH
Confidence 89999999997654321 2 459999999999999999999999999999999999999999999999999996 57
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+.+++++. +++|++||+||.+ +.||+++++||++|++ .||+||+|+|+||+++|++.++++.+|++|||||
T Consensus 125 ~~~~~~a~~~~~~~-~~~~~~~~~~~~~-~~g~~t~a~Ei~~q~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigV 201 (317)
T PRK06815 125 LNAELAARRAAEQQ-GKVYISPYNDPQV-IAGQGTIGMELVEQQP-DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGC 201 (317)
T ss_pred HHHHHHHHHHHHhc-CCEEecCCCChhh-hcchhHHHHHHHHhcC-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 88888888888775 7889999999987 7899999999999994 6999999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCC-----CCcccCccCCCCCc----cCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHH
Q 023801 161 EPTESPVLS----GGKP-----GPHKIQGIGAGFVP----GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 227 (277)
Q Consensus 161 ~~~~~~~~~----~~~~-----~~~~~~gl~~~~~~----~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~ 227 (277)
||++++++. .+++ ..+.+++++.+..+ +.+..+++|+++.|+|+|++++++.|++++||++||++|+
T Consensus 202 ep~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~~gi~vepssg~ 281 (317)
T PRK06815 202 WPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGGVEPGAITFPLCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIEGAAGV 281 (317)
T ss_pred EeCCCCcHHHHHHCCCcccCCCCCChhhhhccCCcccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCeEecHHHH
Confidence 999998663 2222 12345565433222 2345678999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCCC
Q 023801 228 AAAAAIEIAKRPENAGKLIVVIFPSFGER 256 (277)
Q Consensus 228 alaa~~~~~~~~~~~~~~vv~i~~~gG~~ 256 (277)
++++++++.++ .++++||+|+ +||+.
T Consensus 282 alaa~~~~~~~--~~~~~vv~i~-tG~~~ 307 (317)
T PRK06815 282 ALAAALKLAPR--YQGKKVAVVL-CGKNI 307 (317)
T ss_pred HHHHHHhCchh--cCCCcEEEEE-CCCCC
Confidence 99999987665 3678999999 55663
No 43
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=5.6e-48 Score=346.23 Aligned_cols=250 Identities=21% Similarity=0.264 Sum_probs=212.7
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKG 79 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~ 79 (277)
|||+|.+++.+++++|. ++||++||||||+++|++|+.+|++|+||||++ .++.|+++++.|||+|+.+++ +
T Consensus 62 KdR~a~~~l~~a~~~g~-----~~iv~aSsGN~g~alA~~a~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~--~ 134 (353)
T PRK07409 62 KDRGMTMAVTKAKEEGA-----KAVICASTGNTSASAAAYAARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDG--N 134 (353)
T ss_pred HHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECC--C
Confidence 89999999999999886 579999999999999999999999999999998 588999999999999999996 6
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCC------
Q 023801 80 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNP------ 153 (277)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~------ 153 (277)
++++.+.++++++++ +++++++ .||.+ +.||.|+++||++|++..||+||+|+|+||+++|++.+|++..+
T Consensus 135 ~~~~~~~a~~l~~~~-~~~~~~~-~n~~~-~~g~~t~~~EI~~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~ 211 (353)
T PRK07409 135 FDDALEIVRELAEKY-PVTLVNS-VNPYR-IEGQKTAAFEIVDALGDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTK 211 (353)
T ss_pred HHHHHHHHHHHHHhc-CceecCC-CCchh-hhhHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccC
Confidence 888989999988877 4677765 58888 78999999999999966799999999999999999999998643
Q ss_pred CcEEEEEecCCCCccCCCCCC---CcccCccCCCCCccCc------cccccCeEEEeCHHHHHHHHHHHHHHcCCeeecc
Q 023801 154 NIKLYGIEPTESPVLSGGKPG---PHKIQGIGAGFVPGVL------EVNIIDEVVQVSSDEAIETAKLLALKEGLFVGIS 224 (277)
Q Consensus 154 ~~~vigV~~~~~~~~~~~~~~---~~~~~gl~~~~~~~~~------~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~ 224 (277)
.+|||+|||.+++++..+++. .+..++++.+. |..+ ..++.++++.|+|+|++++++.|++++|+++||+
T Consensus 212 ~~kvigVep~g~~~~~~g~~~~~~~ti~~~l~~~~-~~~~~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~egi~v~ps 290 (353)
T PRK07409 212 LPRMMGFQAAGAAPIVRGEPVKNPETIATAIRIGN-PASWDKAVAARDESGGLIDAVTDEEILEAYRLLARKEGVFCEPA 290 (353)
T ss_pred CCeEEEEecCCCChHhhCCcCCCCcceeeeeecCC-CCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhCCceeCch
Confidence 489999999998777544432 22334554332 2221 2345568999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC-CCCCeEEEEecCCCCCCcchh
Q 023801 225 SGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSSV 261 (277)
Q Consensus 225 sg~alaa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~~ 261 (277)
+|+++++++++.+++. .++++||+|+|++|+||+++.
T Consensus 291 sa~alaa~~~~~~~~~~~~~~~VV~i~tg~g~k~~~~~ 328 (353)
T PRK07409 291 SAASVAGLLKAIRAGKIPEGSTVVCTLTGNGLKDPDTA 328 (353)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcEEEEecCccccchHHH
Confidence 9999999999887653 467899999977899999864
No 44
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=5.1e-48 Score=333.54 Aligned_cols=250 Identities=24% Similarity=0.269 Sum_probs=222.4
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|.|+|.+++.+.-++++ + ..|+++|.||||+|+|++|+++|+|++||||..+|..|++.++.+||+|++.+. ++
T Consensus 97 K~RGa~~~~~kla~~~~-~---~gViasSaGNha~a~Ayaa~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vil~G~--~~ 170 (457)
T KOG1250|consen 97 KIRGAGNALQKLAKQQK-K---AGVIASSAGNHAQAAAYAARKLGIPATIVMPVATPLMKIQRCRNLGATVILSGE--DW 170 (457)
T ss_pred ehhhHHHHHHHHHHhhh-c---CceEEecCccHHHHHHHHHHhcCCceEEEecCCChHHHHHHHhccCCEEEEecc--cH
Confidence 67999999999888775 3 459999999999999999999999999999999999999999999999999984 89
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++...|.++++++ ++.|++|||+|+. ++|++|++.||.+|+...+++|+||||+||+++||+.+++...|+++||||
T Consensus 171 deAk~~a~~lAke~-gl~yI~pfDhP~I-~aGqgTig~EIl~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGV 248 (457)
T KOG1250|consen 171 DEAKAFAKRLAKEN-GLTYIPPFDHPDI-WAGQGTIGLEILEQLKEPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGV 248 (457)
T ss_pred HHHHHHHHHHHHhc-CceecCCCCCchh-hcCcchHHHHHHHhhcCCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEE
Confidence 99999999999998 8999999999999 899999999999999666679999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCCC-----CcccCccCCCCC---ccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHH
Q 023801 161 EPTESPVLS----GGKPG-----PHKIQGIGAGFV---PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228 (277)
Q Consensus 161 ~~~~~~~~~----~~~~~-----~~~~~gl~~~~~---~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 228 (277)
|+++|.++. .+++. .+.++|++...+ ++.+.+.++|+++.|+|+|+..++.++.++|..++||++|++
T Consensus 249 Et~~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~vvvV~~~ei~aaI~~l~edek~vvEpAgaaa 328 (457)
T KOG1250|consen 249 ETEGAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKLVDRVVVVEDDEIAAAILRLFEDEKMVVEPAGAAA 328 (457)
T ss_pred eecCcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHhcCceEEEeccHHHHHHHHHHHHhhhheeccchHHH
Confidence 999998664 34432 245677776543 445668899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEecCCCCCCcch
Q 023801 229 AAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 260 (277)
Q Consensus 229 laa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 260 (277)
++++... +....+++++|.++ +|++-.+|.
T Consensus 329 Laai~~~-~~~~lk~~~vv~il-sG~n~~~~~ 358 (457)
T KOG1250|consen 329 LAAIYSG-KLNHLKGKKVVSIL-SGGNIDFDS 358 (457)
T ss_pred HHHHHhc-cccccCCceEEeec-ccCCCCccc
Confidence 9999887 44457899999999 888855553
No 45
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=6.4e-48 Score=339.79 Aligned_cols=244 Identities=23% Similarity=0.315 Sum_probs=206.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.+++.++.+ + + ++||++|+||||+|+|++|+++|++|+||||+.+++.|+.+++.|||+|+.+++ ++
T Consensus 53 K~R~a~~~~~~~~~-~----~-~~vv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~ 124 (310)
T PRK08246 53 KARGAFNRLLAAPV-P----A-AGVVAASGGNAGLAVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGA--EY 124 (310)
T ss_pred HHHHHHHHHHhhcc-c----C-CeEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCC--CH
Confidence 89999999998765 2 2 579999999999999999999999999999999999999999999999999985 57
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++++.+.+++++. +++|++||+||.+ +.||+|+++||++|+ +.||+||+|+|+||+++|++.+|+. .+||++|
T Consensus 125 ~~~~~~a~~~~~~~-g~~~~~~~~n~~~-i~g~~t~~~Ei~eq~-~~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~v 198 (310)
T PRK08246 125 ADALEAAQAFAAET-GALLCHAYDQPEV-LAGAGTLGLEIEEQA-PGVDTVLVAVGGGGLIAGIAAWFEG---RARVVAV 198 (310)
T ss_pred HHHHHHHHHHHHhc-CCEeCCCCCChhh-hcchHHHHHHHHHhc-CCCCEEEEecCccHHHHHHHHHhcC---CCEEEEE
Confidence 88888888888876 7899999999998 789999999999999 5799999999999999999999975 4899999
Q ss_pred ecCCCCccC----CCCCCCcc-----cCccCCCCC---ccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHH
Q 023801 161 EPTESPVLS----GGKPGPHK-----IQGIGAGFV---PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228 (277)
Q Consensus 161 ~~~~~~~~~----~~~~~~~~-----~~gl~~~~~---~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 228 (277)
||++++++. .+++.... .++++.+.. ++.+.++++|+++.|+|+|++++++.|++++|+++||++|++
T Consensus 199 e~~~~~~~~~s~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~egi~~e~s~aa~ 278 (310)
T PRK08246 199 EPEGAPTLHAALAAGEPVDVPVSGIAADSLGARRVGEIAFALARAHVVTSVLVSDEAIIAARRALWEELRLAVEPGAATA 278 (310)
T ss_pred eeCCChHHHHHHHcCCcccCCCCCceeccccCCCccHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceeehHHHHH
Confidence 999998653 23433222 233443332 334667789999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEecCCCCCCcch
Q 023801 229 AAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 260 (277)
Q Consensus 229 laa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 260 (277)
++++++..++ ..++++||+|+ +||+.++++
T Consensus 279 lAa~~~~~~~-~~~~~~vv~i~-~g~n~d~~~ 308 (310)
T PRK08246 279 LAALLSGAYV-PAPGERVAVVL-CGANTDPAT 308 (310)
T ss_pred HHHHHhCCcc-ccCCCeEEEEE-CCCCCChhh
Confidence 9998754322 13677899999 888876653
No 46
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=3.6e-47 Score=337.94 Aligned_cols=247 Identities=24% Similarity=0.274 Sum_probs=212.3
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.+++.+++++|. ++||++|+||||+|+|++|+.+|++|++|||+++++.|+++|+.+||+|+.++. ++
T Consensus 54 K~R~a~~~l~~a~~~g~-----~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~--~~ 126 (324)
T cd01563 54 KDRGMTVAVSKAKELGV-----KAVACASTGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEG--NF 126 (324)
T ss_pred HHhhHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEEECC--cH
Confidence 89999999999999885 679999999999999999999999999999999999999999999999999986 67
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCC-CCCEEEEecCCchhHHHHHHHHhhcC------C
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG-RIDALVSGIGTGGTITGAGKFLKEKN------P 153 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~-~~d~iv~pvG~Gg~~aGi~~~~~~~~------~ 153 (277)
+++.+.+.+++++. ++|++||+||.+ +.||.++++||++|+++ .||+||+|+|+||+++|++.+++... +
T Consensus 127 ~~~~~~a~~~~~~~--~~~~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~ 203 (324)
T cd01563 127 DDALRLVRELAEEN--WIYLSNSLNPYR-LEGQKTIAFEIAEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDR 203 (324)
T ss_pred HHHHHHHHHHHHhc--CeeccCCCCcce-ecchhhhHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCcccc
Confidence 88888888888775 789999999998 78999999999999963 69999999999999999999999875 5
Q ss_pred CcEEEEEecCCCCccC----CCCC-------CCcccCccCCCCCc-c----CccccccCeEEEeCHHHHHHHHHHHHHHc
Q 023801 154 NIKLYGIEPTESPVLS----GGKP-------GPHKIQGIGAGFVP-G----VLEVNIIDEVVQVSSDEAIETAKLLALKE 217 (277)
Q Consensus 154 ~~~vigV~~~~~~~~~----~~~~-------~~~~~~gl~~~~~~-~----~~~~~~~~~~~~v~d~e~~~a~~~l~~~~ 217 (277)
+++||+|||.+++++. .++. ..+.+++++.+..+ + .+..++.++++.|+|+|++++++.|++++
T Consensus 204 ~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~ 283 (324)
T cd01563 204 LPRMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIATAIRIGNPASGPKALRAVRESGGTAVAVSDEEILEAQKLLARTE 283 (324)
T ss_pred CCeEEEEecCCCCHHHHHHHcCCCccCcCCCCCceeeeeecCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcC
Confidence 7999999999986552 1211 12334566543211 1 12345678999999999999999999999
Q ss_pred CCeeeccHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCCCC
Q 023801 218 GLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERY 257 (277)
Q Consensus 218 gi~~~p~sg~alaa~~~~~~~~~-~~~~~vv~i~~~gG~~~ 257 (277)
|+++||+||+++++++++.+++. .++++||+++|++|.|+
T Consensus 284 gi~~~pssa~alaa~~~l~~~~~~~~~~~Vv~v~tg~g~~~ 324 (324)
T cd01563 284 GIFVEPASAASLAGLKKLREEGIIDKGERVVVVLTGHGLKD 324 (324)
T ss_pred CceeCchHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCccCC
Confidence 99999999999999999887754 36789999999999864
No 47
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=2.4e-47 Score=343.58 Aligned_cols=236 Identities=21% Similarity=0.261 Sum_probs=204.2
Q ss_pred CChhHHHHHHH-----HHHcCCCCCCC----------------cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHH
Q 023801 1 MCRIGYSMISD-----AEAKGLITPGE----------------SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE 59 (277)
Q Consensus 1 ~dR~a~~~v~~-----a~~~g~l~~g~----------------~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~ 59 (277)
|||+|.++|.. ++++|.|+||. ++||++||||||+|+|++|+.+|++|+||||.++++.
T Consensus 92 KdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~ 171 (404)
T cd06447 92 KARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFRKLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQW 171 (404)
T ss_pred HHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhhhcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHH
Confidence 89999999974 88999999985 4799999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCC---C-----CCEE
Q 023801 60 RRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG---R-----IDAL 131 (277)
Q Consensus 60 ~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~---~-----~d~i 131 (277)
|+++|+.|||+|+.+++ +++++.+.++++++++++++|++|++++.. ++||+|+++||++|+++ + ||+|
T Consensus 172 K~~~ira~GAeVv~v~~--~~~~a~~~a~~la~~~~~~~~v~~~n~~~~-iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~V 248 (404)
T cd06447 172 KKDKLRSKGVTVVEYET--DYSKAVEEGRKQAAADPMCYFVDDENSRDL-FLGYAVAASRLKAQLAELGIKVDAEHPLFV 248 (404)
T ss_pred HHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHHCCCeEeCCCCCchhH-HhhHHHHHHHHHHHhhhccCccccCCCCEE
Confidence 99999999999999985 788999999999988767789999766655 89999999999999952 3 5589
Q ss_pred EEecCCchhHHHHHHHHhhc-CCCcEEEEEecCCCCccC----CCCC-----------CCcccCccCCCCC---ccCccc
Q 023801 132 VSGIGTGGTITGAGKFLKEK-NPNIKLYGIEPTESPVLS----GGKP-----------GPHKIQGIGAGFV---PGVLEV 192 (277)
Q Consensus 132 v~pvG~Gg~~aGi~~~~~~~-~~~~~vigV~~~~~~~~~----~~~~-----------~~~~~~gl~~~~~---~~~~~~ 192 (277)
|+|+|+||+++|++++||+. .|+++||+|||++++.+. .+.+ ..+.++||+.+.. ++.+..
T Consensus 249 vvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap~~~~s~~ag~~~~~~~~~~g~~~~TiadGl~~~~p~~~~~~~~~ 328 (404)
T cd06447 249 YLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSPCMLLGMATGLHDKISVQDIGIDNRTAADGLAVGRPSGLVGKLME 328 (404)
T ss_pred EEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCChHHHHHHHcCCCccccccccCCCccchhhhhcCCCcchhHHHHHH
Confidence 99999999999999999997 788999999999987552 2211 2345667766532 233446
Q ss_pred cccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcC
Q 023801 193 NIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 239 (277)
Q Consensus 193 ~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~ 239 (277)
..+|+++.|+|+|++++++.|++++|+++||+||+++++++++.++.
T Consensus 329 ~~vd~~v~Vsd~ei~~a~r~La~~~gi~vepSgAa~lAAl~~~~~~~ 375 (404)
T cd06447 329 PLLSGIYTVEDDELYRLLAMLKDSENIEVEPSAAAGFTGPAQVLSEA 375 (404)
T ss_pred HhCCcEEEECHHHHHHHHHHHHHHcCcEEeHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999999999999999999999987753
No 48
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=3.6e-47 Score=337.07 Aligned_cols=245 Identities=21% Similarity=0.243 Sum_probs=205.3
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.++|.+++++|. ++||++|+||||+|+|++|+.+|++|+||||...++.|+++++.|||+|+.+++ ++
T Consensus 47 K~R~a~~~l~~a~~~g~-----~~lv~aSsGN~g~alA~~aa~~G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~--~~ 119 (319)
T PRK06381 47 KDRIAEAHVRRAMRLGY-----SGITVGTCGNYGASIAYFARLYGLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDG--KY 119 (319)
T ss_pred HHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEcCC--CH
Confidence 89999999999999987 679999999999999999999999999999999999999999999999999996 57
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCC-CCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhc------CC
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFE-NPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEK------NP 153 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~------~~ 153 (277)
+++.+.+++++++. ++|++++++ ||...++||+++++||++|++..||+||+|+|+||+++|++++|++. .|
T Consensus 120 ~~~~~~a~~~~~~~-~~~~~~~~~~n~~~~~~G~~t~a~Ei~~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~ 198 (319)
T PRK06381 120 EEAVERSRKFAKEN-GIYDANPGSVNSVVDIEAYSAIAYEIYEALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSR 198 (319)
T ss_pred HHHHHHHHHHHHHc-CcEecCCCCCCcchHhhhHHHHHHHHHHHhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCC
Confidence 88888898888775 788888986 76322789999999999999657999999999999999999999998 78
Q ss_pred CcEEEEEecCCCCccC----CCCCC------CcccC-ccCCCCC---------ccCccccccCeEEEeCHHHHHHHHHHH
Q 023801 154 NIKLYGIEPTESPVLS----GGKPG------PHKIQ-GIGAGFV---------PGVLEVNIIDEVVQVSSDEAIETAKLL 213 (277)
Q Consensus 154 ~~~vigV~~~~~~~~~----~~~~~------~~~~~-gl~~~~~---------~~~~~~~~~~~~~~v~d~e~~~a~~~l 213 (277)
.++|++||+.+++++. .+... .+..+ .++.+.. ...+..++.++.+.|+|+|++++++.|
T Consensus 199 ~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~d~e~~~a~~~l 278 (319)
T PRK06381 199 MPRMIGVSTSGGNQIVESFKRGSSEVVDLEVDEIRETAVNEPLVSYRSFDGDNALEAIYDSHGYAFGFSDDEMVKYAELL 278 (319)
T ss_pred CCEEEEEeeCCCCHHHHHHHcCCCcccCCCcchhhhcccCCCcccccCCCHHHHHHHHHHcCCEEEEECHHHHHHHHHHH
Confidence 9999999999986542 11111 01111 1111110 011234567799999999999999999
Q ss_pred HHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 023801 214 ALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGE 255 (277)
Q Consensus 214 ~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~ 255 (277)
++++||++||++|+++++++++.+++.. +++||+++ |||.
T Consensus 279 a~~egi~~epssa~alaa~~~~~~~~~~-~~~vv~i~-tGg~ 318 (319)
T PRK06381 279 RRMEGLNALPASASALAALVKYLKKNGV-NDNVVAVI-TGRR 318 (319)
T ss_pred HHhCCcccCchHHHHHHHHHHHHHcCCC-CCcEEEEe-cCCC
Confidence 9999999999999999999999887653 47899999 8875
No 49
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=1.8e-47 Score=337.17 Aligned_cols=244 Identities=27% Similarity=0.360 Sum_probs=212.2
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||.+.++|.+++++|. + ++||++|+||||+|+|++|+++|++|++|+|.+.++.|+++|+.+||+|+.+++ ++
T Consensus 48 Kdr~a~~~l~~~~~~~~---~-~~iv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~--~~ 121 (304)
T cd01562 48 KIRGAYNKLLSLSEEER---A-KGVVAASAGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGE--DF 121 (304)
T ss_pred HHHhHHHHHHhcCHhhc---C-CcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CH
Confidence 89999999999998772 1 459999999999999999999999999999999999999999999999999996 58
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+++++++. +++|++||+||.+ +.||+++++||++|+. .||+||+|+|+|||++|++++|++.++.+|||+|
T Consensus 122 ~~~~~~a~~la~~~-~~~~~~~~~n~~~-~~g~~~~~~Ei~~q~~-~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv 198 (304)
T cd01562 122 DEAEAKARELAEEE-GLTFIHPFDDPDV-IAGQGTIGLEILEQVP-DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGV 198 (304)
T ss_pred HHHHHHHHHHHHhc-CCEEeCCCCCcch-hccHHHHHHHHHHhcC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 88999999998886 7899999999988 7899999999999995 5999999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCC-----CCcccCccCCCCC---ccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHH
Q 023801 161 EPTESPVLS----GGKP-----GPHKIQGIGAGFV---PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228 (277)
Q Consensus 161 ~~~~~~~~~----~~~~-----~~~~~~gl~~~~~---~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 228 (277)
+|.+++++. .++. ..+...+++.... ++.+..++++.++.|+|+|++++++.|+++||+++||+||++
T Consensus 199 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~a 278 (304)
T cd01562 199 EPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKRPGELTFEIIRKLVDDVVTVSEDEIAAAMLLLFEREKLVAEPAGALA 278 (304)
T ss_pred EECCCchHHHHHHcCCcccCCCCCcccccccCCCchHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCceEchhHHHH
Confidence 999987653 1221 1233445543321 233456789999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEecCCCCC
Q 023801 229 AAAAIEIAKRPENAGKLIVVIFPSFGER 256 (277)
Q Consensus 229 laa~~~~~~~~~~~~~~vv~i~~~gG~~ 256 (277)
+++++++.++. ++++||+|+ +||+.
T Consensus 279 ~a~~~~~~~~~--~~~~vv~i~-tGG~~ 303 (304)
T cd01562 279 LAALLSGKLDL--KGKKVVVVL-SGGNI 303 (304)
T ss_pred HHHHHhCcccc--CCCeEEEEe-cCCCC
Confidence 99999987764 678999999 88773
No 50
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=6.2e-47 Score=343.45 Aligned_cols=251 Identities=21% Similarity=0.243 Sum_probs=212.7
Q ss_pred CChhHHHHHHH-----HHHcCCCCCCC----------------cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHH
Q 023801 1 MCRIGYSMISD-----AEAKGLITPGE----------------SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE 59 (277)
Q Consensus 1 ~dR~a~~~v~~-----a~~~g~l~~g~----------------~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~ 59 (277)
|||+|.++|.. +++.|.++|+. ++||++||||||+|+|++|+.+|++|+||||+++++.
T Consensus 110 KdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~ 189 (431)
T TIGR02035 110 KARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKFKDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQW 189 (431)
T ss_pred HHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhhhhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHH
Confidence 89999999975 78899998874 4799999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCC--------CCCEE
Q 023801 60 RRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG--------RIDAL 131 (277)
Q Consensus 60 ~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~--------~~d~i 131 (277)
|+++++.|||+|+.+++ +|+++.+.+++++++.++++|++++ |+.+.++||+|+++||++|+++ .||+|
T Consensus 190 K~~~ir~~GAeVv~~~~--~~~~a~~~A~~la~~~~~~~~~d~~-n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V 266 (431)
T TIGR02035 190 KKDKLRSKGVTVVEYES--DYGVAVEEGRKNADADPMCYFVDDE-NSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFV 266 (431)
T ss_pred HHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCCeEECCCC-CcccHHhhHHHHHHHHHHhhhccccccccCCCCEE
Confidence 99999999999999996 7899999999999887677888874 4455589999999999999952 47799
Q ss_pred EEecCCchhHHHHHHHHhhc-CCCcEEEEEecCCCCccC----CCC-----------CCCcccCccCCCCCc---cCccc
Q 023801 132 VSGIGTGGTITGAGKFLKEK-NPNIKLYGIEPTESPVLS----GGK-----------PGPHKIQGIGAGFVP---GVLEV 192 (277)
Q Consensus 132 v~pvG~Gg~~aGi~~~~~~~-~~~~~vigV~~~~~~~~~----~~~-----------~~~~~~~gl~~~~~~---~~~~~ 192 (277)
++|+|+||+++||++++|+. +|++|||+|||++++++. .++ ...+.++||+.+..+ +.+..
T Consensus 267 ~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s~~~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p~~~~~~~~~ 346 (431)
T TIGR02035 267 YLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPCMLLGVYTGLHEKISVQDIGIDNITAADGLAVGRPSGFVGRLME 346 (431)
T ss_pred EEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCCHHHHHHHhcCCCccccccccCCCCCceeccccCCCcchhHHHHHH
Confidence 99999999999999999997 889999999999997642 222 124567788776432 23345
Q ss_pred cccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcC-----------CC-CCCeEEEEecCCCC
Q 023801 193 NIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP-----------EN-AGKLIVVIFPSFGE 255 (277)
Q Consensus 193 ~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~-----------~~-~~~~vv~i~~~gG~ 255 (277)
.++|+++.|+|+|++++++.|++++|+++||+||++++++.++.+.. +. ++.+.++.. |||.
T Consensus 347 ~~vd~vv~VsD~ei~~a~~~L~~~egi~vEpSsaa~laa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-tg~~ 420 (431)
T TIGR02035 347 PLLSGIYTVDDYTLYDLLRILAESEGKRLEPSALAGMEGPVRLLKYEDSYRYIEGRIGKNLNNATHVVWA-TGGG 420 (431)
T ss_pred HhCCeEEEECHHHHHHHHHHHHHHcCCeEcHHHHHHHHHHHHHHhhhhhHHHHcCccccccCCCeEEEEe-cCCC
Confidence 68999999999999999999999999999999999999999887652 01 355677777 6665
No 51
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=4.6e-47 Score=336.78 Aligned_cols=236 Identities=22% Similarity=0.195 Sum_probs=196.9
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.++|.+++++|. ++|+++||||||.|+|++|+++|++|+||||+++++.|+.+|+.|||+|+.+++ ++
T Consensus 81 KDRga~~~i~~a~~~g~-----~~vv~aSsGN~g~slA~~aa~~G~~~~i~vP~~~~~~k~~~i~~~GA~vi~v~~--~~ 153 (338)
T PRK06450 81 KDRGSVTLISYLAEKGI-----KQISEDSSGNAGASIAAYGAAAGIEVKIFVPETASGGKLKQIESYGAEVVRVRG--SR 153 (338)
T ss_pred HHHHHHHHHHHHHHcCC-----CEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CH
Confidence 89999999999999876 679999999999999999999999999999999999999999999999999996 56
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCC-CCCEEEEecCCchhHHHHHHHHhhcCC------
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG-RIDALVSGIGTGGTITGAGKFLKEKNP------ 153 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~-~~d~iv~pvG~Gg~~aGi~~~~~~~~~------ 153 (277)
+++.+. +++. +.+|+++++||.+ ++||+|+++||++|++. .||+||+|+|+||+++|++++|+++.+
T Consensus 154 ~~~~~~----a~~~-g~~~~~~~~np~~-ieG~kTia~EI~eql~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~ 227 (338)
T PRK06450 154 EDVAKA----AENS-GYYYASHVLQPQF-RDGIRTLAYEIAKDLDWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISE 227 (338)
T ss_pred HHHHHH----HHhc-CeEeccCCCCccH-HHHHHHHHHHHHHHcCCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccC
Confidence 655443 4444 6788999999998 89999999999999963 599999999999999999999998754
Q ss_pred CcEEEEEecCCCCccC----CCCC-----CCcccCccCCCCCccCc------cccccCeEEEeCHHHHHHHHHHHHHHcC
Q 023801 154 NIKLYGIEPTESPVLS----GGKP-----GPHKIQGIGAGFVPGVL------EVNIIDEVVQVSSDEAIETAKLLALKEG 218 (277)
Q Consensus 154 ~~~vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~~~~~~~------~~~~~~~~~~v~d~e~~~a~~~l~~~~g 218 (277)
.+|||+|||++++++. +..+ ..+..++|..+. |... ..+. +..+.|+|+|+++++++|++ +|
T Consensus 228 ~prii~Vq~~g~~p~~~a~~~~~~~~~~~~~tia~~l~~~~-p~~~~~~~~~i~~~-g~~v~V~d~ei~~a~~~La~-~G 304 (338)
T PRK06450 228 MPKIVAVQTEQVSPLCAKFKGISYTPPDKVTSIADALVSTR-PFLLDYMVKALSEY-GECIVVSDNEIVEAWKELAK-KG 304 (338)
T ss_pred CCeEEEEeeCCCCHHHHHhcCCCCCCCCCCCcceeeeecCC-CCCHHHHHHHHHhc-CcEEEECHHHHHHHHHHHHH-cC
Confidence 4899999999987653 2111 122334544322 2211 1234 78999999999999999987 69
Q ss_pred CeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCc
Q 023801 219 LFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYL 258 (277)
Q Consensus 219 i~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~ 258 (277)
+++||+||+++++++++ ++++||+++|++|.|.+
T Consensus 305 i~vepssaaalAa~~~l------~~~~vv~vltG~glK~~ 338 (338)
T PRK06450 305 LLVEYSSATVYAAYKKY------SVNDSVLVLTGSGLKVL 338 (338)
T ss_pred CEEChhHHHHHHHHHHC------CCCCEEEEeCCCCccCC
Confidence 99999999999999875 34689999989998864
No 52
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=8.3e-47 Score=343.26 Aligned_cols=250 Identities=23% Similarity=0.227 Sum_probs=212.9
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKG 79 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~ 79 (277)
|||++..+|.+++++|. ++||++||||||+|+|++|+++|++|+||+|++ +++.|+.+++.|||+|+.+++ +
T Consensus 99 KdRga~~~v~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~~G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~--~ 171 (397)
T PRK06260 99 KDRGMTVGVTKALELGV-----KTVACASTGNTSASLAAYAARAGLKCYVLLPAGKVALGKLAQALLHGAKVLEVDG--N 171 (397)
T ss_pred HHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHHHHcCCcEEEEEeCCCccHHHHHHHHhcCCEEEEECC--c
Confidence 89999999999999986 679999999999999999999999999999997 789999999999999999986 6
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCC-CCCEEEEecCCchhHHHHHHHHhhcC------
Q 023801 80 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG-RIDALVSGIGTGGTITGAGKFLKEKN------ 152 (277)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~-~~d~iv~pvG~Gg~~aGi~~~~~~~~------ 152 (277)
++++.+.+++++++. ++|+++++ ||.+ ++||+|+++||++|++. .||+||+|+|+||+++|++++|+++.
T Consensus 172 ~~~~~~~a~~~~~~~-g~y~~~~~-np~~-~~G~~t~a~Ei~eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~ 248 (397)
T PRK06260 172 FDDALDMVVELAKEG-KIYLLNSI-NPFR-LEGQKTIGFEIADQLGWEVPDRVVLPVGNAGNISAIWKGFKELVELGIID 248 (397)
T ss_pred HHHHHHHHHHHHhhC-CEEeecCC-Cchh-hcchhhHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcC
Confidence 888889999988876 78888887 8888 88999999999999965 69999999999999999999999875
Q ss_pred CCcEEEEEecCCCCccC----CCCC-------CCcccCccCCCCCcc------CccccccCeEEEeCHHHHHHHHHHHHH
Q 023801 153 PNIKLYGIEPTESPVLS----GGKP-------GPHKIQGIGAGFVPG------VLEVNIIDEVVQVSSDEAIETAKLLAL 215 (277)
Q Consensus 153 ~~~~vigV~~~~~~~~~----~~~~-------~~~~~~gl~~~~~~~------~~~~~~~~~~~~v~d~e~~~a~~~l~~ 215 (277)
+.+|||+||+++++++. .+.. ..+..+++..+. |. ....+..+.++.|+|+|++++++.|++
T Consensus 249 ~~prii~Vq~~g~~~~~~a~~~g~~~~~~~~~~~tia~~i~i~~-p~~~~~~~~~l~~~~g~~v~V~d~e~~~a~~~la~ 327 (397)
T PRK06260 249 KLPKMTGIQAEGAAPIVEAIKKGKDEIEPVENPETVATAIRIGN-PVNAPKALRAIRESGGTAEAVSDEEILDAQKLLAR 327 (397)
T ss_pred CCCeEEEEecCCCcHHHHHHHcCCCcccccCCCCceeeeeEeCC-CCCHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHH
Confidence 34799999999987653 2221 112233433221 21 123445678999999999999999999
Q ss_pred HcCCeeeccHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCCCCcchh
Q 023801 216 KEGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSSV 261 (277)
Q Consensus 216 ~~gi~~~p~sg~alaa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~~ 261 (277)
++|+++||+||+++++++++.+++. .++++||+++|++|.|+.+..
T Consensus 328 ~eGi~vepssaaalAa~~~l~~~g~i~~~~~VV~i~tG~glK~~~~~ 374 (397)
T PRK06260 328 KEGIGVEPASAASVAGLIKLVEEGVIDKDERVVCITTGHLLKDPDAA 374 (397)
T ss_pred hCCCeeCchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccCchHHH
Confidence 9999999999999999999988765 468899999988899887643
No 53
>PLN02569 threonine synthase
Probab=100.00 E-value=1.6e-46 Score=345.74 Aligned_cols=253 Identities=19% Similarity=0.159 Sum_probs=214.5
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKG 79 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~ 79 (277)
|||++..++..+.+.|........|+++||||||+|+|++|+.+|++|+||+|++ .+..|+.+++.|||+|+.+++ +
T Consensus 166 KDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAayaa~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g--~ 243 (484)
T PLN02569 166 KDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAYCAAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDT--D 243 (484)
T ss_pred HHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECC--C
Confidence 8999999999999987633222569999999999999999999999999999996 788999999999999999996 7
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCC-CCEEEEecCCchhHHHHHHHHhhcC------
Q 023801 80 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGR-IDALVSGIGTGGTITGAGKFLKEKN------ 152 (277)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~-~d~iv~pvG~Gg~~aGi~~~~~~~~------ 152 (277)
|+++++.+++++++. ++|+++++ ||.+ ++||+|+++||++|++++ ||+||+|+|+||+++|++++|+++.
T Consensus 244 ~d~a~~~a~e~~~~~-~~~~~n~~-Np~~-ieG~kT~a~EI~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~ 320 (484)
T PLN02569 244 FDGCMRLIREVTAEL-PIYLANSL-NSLR-LEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVD 320 (484)
T ss_pred HHHHHHHHHHHHHHc-CCEecCCC-Ccch-hHhHHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCC
Confidence 899999999988876 68889988 8888 799999999999999754 9999999999999999999999863
Q ss_pred CCcEEEEEecCCCCccC----CCC-------CCCcccCccCCCCCccCcc------ccccCeEEEeCHHHHHHHHHHHHH
Q 023801 153 PNIKLYGIEPTESPVLS----GGK-------PGPHKIQGIGAGFVPGVLE------VNIIDEVVQVSSDEAIETAKLLAL 215 (277)
Q Consensus 153 ~~~~vigV~~~~~~~~~----~~~-------~~~~~~~gl~~~~~~~~~~------~~~~~~~~~v~d~e~~~a~~~l~~ 215 (277)
+.+||++||+++++++. .+. ..++.+++++.+. |..+. .+.-+.++.|+|+|++++++. ++
T Consensus 321 ~~Priv~Vqa~g~~pl~~a~~~G~~~~~~~~~~~T~A~gi~i~~-P~~~~~~l~al~~s~g~~v~VsDeEi~~a~~~-a~ 398 (484)
T PLN02569 321 RLPRLVCAQAANANPLYRAYKSGWEEFKPVKANPTFASAIQIGD-PVSIDRAVYALKESNGIVEEATEEELMDAQAE-AD 398 (484)
T ss_pred CCCeEEEEeeCCCcHHHHHHHcCCCccccCCCCCccchhhccCC-CccHHHHHHHHHHhCCEEEEECHHHHHHHHHH-HH
Confidence 46799999999997664 221 1234556665442 33221 223445799999999999999 88
Q ss_pred HcCCeeeccHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCCCCcch
Q 023801 216 KEGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSS 260 (277)
Q Consensus 216 ~~gi~~~p~sg~alaa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~ 260 (277)
++|+++||+||+++++++++.+++. .++++||+++|+.|.||.+.
T Consensus 399 ~~Gi~vepssAaalAal~kl~~~g~i~~~~~VV~i~Tg~GlK~~~~ 444 (484)
T PLN02569 399 KTGMFLCPHTGVALAALKKLRASGVIGPTDRTVVVSTAHGLKFTQS 444 (484)
T ss_pred HCCcEECchHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCcccChhH
Confidence 8999999999999999999988765 46789999999999999874
No 54
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=8.2e-47 Score=307.24 Aligned_cols=248 Identities=24% Similarity=0.314 Sum_probs=214.9
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|.|+|.+.+..+.++.. . +.|++.||||||+|+|++|+.+|+|++||||.++|..|+..++.||++|+++++ ..
T Consensus 56 KfRGAlNav~~l~~ek~-~---kgvithSSGNHaqAlalaAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~--~~ 129 (323)
T KOG1251|consen 56 KFRGALNAVSSLKAEKR-A---KGVITHSSGNHAQALALAAKILGIPATIVVPKDAPICKVAATRGYGANIIFCEP--TV 129 (323)
T ss_pred ehhhhHHHHHHhhHhhh-c---CceEeecCCcHHHHHHHHHHhcCCCeEEEecCCChHHHHHHHHhcCceEEEecC--cc
Confidence 68999999999984433 1 459999999999999999999999999999999999999999999999999997 34
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+.++.++. +++.++||++|.. +.|++|+++|+++|. +.+|++|+|+|+||+++|++...+.+.|+++|++|
T Consensus 130 ~sRE~va~~ltee~-g~~~i~Py~~p~v-IaGqgTiA~ElleqV-g~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~v 206 (323)
T KOG1251|consen 130 ESRESVAKDLTEET-GYYLIHPYNHPSV-IAGQGTIALELLEQV-GEIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAV 206 (323)
T ss_pred chHHHHHHHHHHhc-CcEEeCCCCCcce-eeccchHHHHHHHhh-CccceEEEeecCcchhhHHHHHHhccCCCcEEEEe
Confidence 67788899999998 7899999999998 899999999999999 58999999999999999999999999999999999
Q ss_pred ecCCCCcc----CCCCC-----CCcccCccCCC---CCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHH
Q 023801 161 EPTESPVL----SGGKP-----GPHKIQGIGAG---FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228 (277)
Q Consensus 161 ~~~~~~~~----~~~~~-----~~~~~~gl~~~---~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 228 (277)
||+..+.- ..++. .++..+|.... ..+|.+.++++|+.++|+|+|+.++++.++++..+.+||+++.+
T Consensus 207 eP~~a~d~~qsf~~g~I~~l~tp~TIADG~r~~~lG~~t~pIir~~vddi~Tv~e~Ei~~~lk~~~ermK~~vEPTa~lg 286 (323)
T KOG1251|consen 207 EPEAADDGQQSFLKGKIVHLDTPKTIADGVRTSHLGPLTWPIIRDLVDDILTVSEDEIKEALKLIWERMKVVVEPTAALG 286 (323)
T ss_pred cCcccchHHHHHhcCCeEecCCchhhhhhhhhccccccchHHHHHHhhhheeecHHHHHHHHHHHHHHHheeeccchhHH
Confidence 99887532 12221 23445555432 35778888999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEecCCCCCCcch
Q 023801 229 AAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 260 (277)
Q Consensus 229 laa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 260 (277)
+++++..-.+ ...+++.+|+ +|||.++..
T Consensus 287 fAavl~~k~~--~~~K~igIiL-sGGNVD~~~ 315 (323)
T KOG1251|consen 287 FAAVLSHKFA--LNIKRIGIIL-SGGNVDLNS 315 (323)
T ss_pred HHHHHhhhHH--hccCceEEEE-eCCcccccc
Confidence 9998854333 4578999999 999977763
No 55
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=2e-46 Score=339.81 Aligned_cols=260 Identities=21% Similarity=0.251 Sum_probs=212.4
Q ss_pred CChhHHHHHHHHHHc--CC--------------C---CCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHH
Q 023801 1 MCRIGYSMISDAEAK--GL--------------I---TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~--g~--------------l---~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~ 61 (277)
|||++.+.|.++..+ +. + .++ .+|+++|+||||+|+|++|+.+|++|+||||+++++.|+
T Consensus 77 K~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~ 155 (399)
T PRK08206 77 KALGGAYAVARLLAEKLGLDISELSFEELTSGEVREKLGD-ITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERV 155 (399)
T ss_pred HHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhHHHHhccC-CEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHH
Confidence 799999999888732 21 0 022 359999999999999999999999999999999999999
Q ss_pred HHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecC-----CCCC-CcchhhhhhchHHHHHhhhCC---CCCEEE
Q 023801 62 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQ-----QFEN-PANPKIHYETTGPELWKGSGG---RIDALV 132 (277)
Q Consensus 62 ~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~-~~~~~~g~~t~~~Ei~~Q~~~---~~d~iv 132 (277)
.+|+.|||+|+.+++ +++++.+.+.+++++. +++|++ ||+| |.+.++||+|+++||++|+++ .||+||
T Consensus 156 ~~i~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~-g~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vv 232 (399)
T PRK08206 156 DAIRALGAECIITDG--NYDDSVRLAAQEAQEN-GWVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVF 232 (399)
T ss_pred HHHHHcCCEEEEeCC--CHHHHHHHHHHHHHHc-CCEEecCccccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEE
Confidence 999999999999995 6888999999988876 778886 6775 556689999999999999965 599999
Q ss_pred EecCCchhHHHHHHHHhhcC--CCcEEEEEecCCCCccC----CCCC----C--CcccCccCCCC---CccCccccccCe
Q 023801 133 SGIGTGGTITGAGKFLKEKN--PNIKLYGIEPTESPVLS----GGKP----G--PHKIQGIGAGF---VPGVLEVNIIDE 197 (277)
Q Consensus 133 ~pvG~Gg~~aGi~~~~~~~~--~~~~vigV~~~~~~~~~----~~~~----~--~~~~~gl~~~~---~~~~~~~~~~~~ 197 (277)
+|+|+||+++|++.++++++ +.+|||+|||++++++. .+++ . .+..+|+..+. .++.+..+.+|+
T Consensus 233 vpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~gs~~l~~s~~~g~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~d~ 312 (399)
T PRK08206 233 LQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPDQADCLYQSAVDGKPVAVTGDMDTIMAGLACGEPNPLAWEILRNCADA 312 (399)
T ss_pred EcCCccHHHHHHHHHHHHHcCCCCCEEEEECCCCCchHHHHHHcCCcEEeCCCCCceeccCCCCCcCHHHHHHHHHhCCE
Confidence 99999999999999999884 47999999999997653 2222 1 23456665432 234455678999
Q ss_pred EEEeCHHHHHHHHHHHHH----HcCCeeeccHHHHHHHHHHHHhc---------CC-CCCCeEEEEecCCCCCCcchhcc
Q 023801 198 VVQVSSDEAIETAKLLAL----KEGLFVGISSGGAAAAAIEIAKR---------PE-NAGKLIVVIFPSFGERYLSSVLF 263 (277)
Q Consensus 198 ~~~v~d~e~~~a~~~l~~----~~gi~~~p~sg~alaa~~~~~~~---------~~-~~~~~vv~i~~~gG~~~~~~~~~ 263 (277)
++.|+|+|++++++.|++ ++|+++||++|+++++++++.+. +. .++++||+|+ |+|+++.+ .|
T Consensus 313 ~v~VsD~ei~~a~r~La~~~~~~~gi~vepsgAa~lAa~~~~~~~~~~~~~~~~~~i~~~~~Vv~il-tgG~~d~~--~~ 389 (399)
T PRK08206 313 FISCPDEVAALGMRILANPLGGDPPIVSGESGAVGLGALAALMTDPDYQELREKLGLDEDSRVLLIS-TEGDTDPD--RY 389 (399)
T ss_pred EEEECHHHHHHHHHHHhcccCCCCCeeecchHHHHHHHHHHHHhcchhhHHHHhcCCCCCCEEEEEE-CCCCCCHH--HH
Confidence 999999999999999996 78999999999999999976532 22 3578999999 69997766 44
Q ss_pred HHHH
Q 023801 264 ESVR 267 (277)
Q Consensus 264 ~~~~ 267 (277)
.+++
T Consensus 390 ~~~~ 393 (399)
T PRK08206 390 REIV 393 (399)
T ss_pred HHHh
Confidence 4444
No 56
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=6.9e-46 Score=341.41 Aligned_cols=246 Identities=20% Similarity=0.222 Sum_probs=208.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.++|.+|++.|. ++||++||||||+|+|++|+++|++|+||||+++++.|+.+++.|||+|+.+++ ++
T Consensus 96 KdR~a~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v~~--~~ 168 (442)
T PRK05638 96 RDRLATVAVSYGLPYAA-----NGFIVASDGNAAASVAAYSARAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGE--SV 168 (442)
T ss_pred HHHHHHHHHHHHHHcCC-----CEEEEeCCChHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHhcCcEEEEECC--CH
Confidence 89999999999999876 679999999999999999999999999999999999999999999999999985 78
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCC------C
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNP------N 154 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~------~ 154 (277)
+++.+.+++++++. ++|++++++||.+ ++||+|+++||++|++ ||+||+|+|+||+++|++++|+++.+ .
T Consensus 169 ~~~~~~a~~~~~~~-~~~~~~~~~np~~-~eG~~t~a~Ei~eq~~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~ 244 (442)
T PRK05638 169 DEAIEYAEELARLN-GLYNVTPEYNIIG-LEGQKTIAFELWEEIN--PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEI 244 (442)
T ss_pred HHHHHHHHHHHHhC-CeEecCCCCChhH-hhhHHHHHHHHHHHHC--cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCC
Confidence 89999999988775 7999999999998 8999999999999994 99999999999999999999999764 4
Q ss_pred cEEEEEecCCCCccC----CCCC--CCcccCccCCCCCc-----cCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeec
Q 023801 155 IKLYGIEPTESPVLS----GGKP--GPHKIQGIGAGFVP-----GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGI 223 (277)
Q Consensus 155 ~~vigV~~~~~~~~~----~~~~--~~~~~~gl~~~~~~-----~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p 223 (277)
+||++||+++++++. .+.. ..+...++..+... .....++.+.++.|+|+++.++++.+++ +||++||
T Consensus 245 prii~Vq~~~~~p~~~~~~~~~~~~~~t~a~gl~~~~p~~~~~~~~~i~~~~g~~~~v~d~~i~~a~~~l~~-eGi~~ep 323 (442)
T PRK05638 245 PKLIAVQTERCNPIASEILGNKTKCNETKALGLYVKNPVMKEYVSEAIKESGGTAVVVNEEEIMAGEKLLAK-EGIFAEL 323 (442)
T ss_pred CeEEEEecCCCCHHHHHHhcCCCCCCCceeeeEeeCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHh-cCceecc
Confidence 799999999987653 2211 12233444322111 0122344567899999999998887765 7999999
Q ss_pred cHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCCCCc
Q 023801 224 SSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYL 258 (277)
Q Consensus 224 ~sg~alaa~~~~~~~~~-~~~~~vv~i~~~gG~~~~ 258 (277)
+||+++++++++.+++. .++++||+++|++|.|+.
T Consensus 324 ssaaa~Aa~~~~~~~g~i~~~~~Vv~i~tG~g~k~~ 359 (442)
T PRK05638 324 SSAVVMPALLKLGEEGYIEKGDKVVLVVTGSGLKGY 359 (442)
T ss_pred hHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCC
Confidence 99999999999988865 468899999999999884
No 57
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-45 Score=305.65 Aligned_cols=271 Identities=37% Similarity=0.561 Sum_probs=232.6
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC--
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK-- 78 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~-- 78 (277)
|||.|.++++.|+|.|+|-||+ .|++.|+||+|+++|..|+.+|.+|+|+||.+.+.+|.+.++.+||+|+.+++..
T Consensus 80 KDRvAl~iir~Aee~GkL~~gg-~v~EGtaGsTgIslA~v~~a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~ 158 (391)
T KOG1481|consen 80 KDRVALYIIRTAEEKGKLVRGG-TVVEGTAGSTGISLAHVARALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIV 158 (391)
T ss_pred hhhhHHHHHHHHHHcCCcccCc-eEEecCCCccchhHHHhhhhcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCcc
Confidence 8999999999999999999995 6999999999999999999999999999999999999999999999999998532
Q ss_pred ChHHHHHHHHHHHHhCC------CeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcC
Q 023801 79 GMKGAVQKAEEILAKTP------NAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 152 (277)
Q Consensus 79 ~~~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~ 152 (277)
+-.+....|++.+++.+ ..+|.+||+|+.||..||.++|+|||.|..+.+|++++.+|+|||++|+.+++|+..
T Consensus 159 dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aHyetTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~ 238 (391)
T KOG1481|consen 159 DPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLAHYETTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKS 238 (391)
T ss_pred ChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHHHhcCcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcC
Confidence 22333344444443332 236789999999999999999999999999999999999999999999999999988
Q ss_pred CC-cEEEEEecCCCCccC-------------CC----CCCCcccCccCCCCCccCc--cccccCeEEEeCHHHHHHHHHH
Q 023801 153 PN-IKLYGIEPTESPVLS-------------GG----KPGPHKIQGIGAGFVPGVL--EVNIIDEVVQVSSDEAIETAKL 212 (277)
Q Consensus 153 ~~-~~vigV~~~~~~~~~-------------~~----~~~~~~~~gl~~~~~~~~~--~~~~~~~~~~v~d~e~~~a~~~ 212 (277)
+. ++++-.+|.++-.+. .+ .+..+..+|++...++.++ ..+.+|+.+.|+|++++++.+.
T Consensus 239 ~~~v~~~laDPpGSGlYnkV~~GVmy~~~e~eG~r~r~q~dti~EGIGinRiT~Nf~m~~~liD~a~rv~Deqai~Msr~ 318 (391)
T KOG1481|consen 239 DGRVAVFLADPPGSGLYNKVNYGVMYDHIETEGTRRRNQVDTITEGIGINRITGNFQMAEDLIDDAMRVTDEQAINMSRY 318 (391)
T ss_pred CCceEEEEeCCCCCchhhhhhhhhhhhhhhhcCcccCCCcchhhhcccccccccccccchhhhhhheecChHHHHHHHHH
Confidence 75 899999999984332 11 1234567888877666554 4667999999999999999999
Q ss_pred HHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHHHhhhcc
Q 023801 213 LALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEAESM 273 (277)
Q Consensus 213 l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~~ 273 (277)
|..++|++++.+|+.+..+++++++.. .++++||+|+||.|.||++.++.+.+++..+-.
T Consensus 319 Ll~~dGLFvGsSsa~N~VaAv~vAk~L-gpG~~iVtilCDsG~rh~sk~~~~~~l~~~~l~ 378 (391)
T KOG1481|consen 319 LLDNDGLFVGSSSALNCVAAVRVAKTL-GPGHTIVTILCDSGSRHLSKLFSESFLESKKLS 378 (391)
T ss_pred hhhcCceEecchhhHHHHHHHHHHHhc-CCCceEEEEEeCCcchHHHHhcCHHHHhhcCCC
Confidence 999999999999999999999998876 499999999999999999998888877765443
No 58
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=8.8e-45 Score=310.44 Aligned_cols=212 Identities=43% Similarity=0.622 Sum_probs=197.2
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.+++.+++++|.+ |+ .+||++|+||||+|+|++|+++|++|++|+|.+.++.|+++++.+|++|+.+++ ++
T Consensus 31 K~R~a~~~l~~a~~~g~~-~~-~~vv~~ssGN~g~alA~~a~~~g~~~~v~~p~~~~~~~~~~~~~~Ga~v~~~~~--~~ 106 (244)
T cd00640 31 KDRGALNLILLAEEEGKL-PK-GVIIESTGGNTGIALAAAAARLGLKCTIVMPEGASPEKVAQMRALGAEVVLVPG--DF 106 (244)
T ss_pred HHHHHHHHHHHHHHcCCC-CC-CEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CH
Confidence 899999999999999976 44 579999999999999999999999999999999999999999999999999996 47
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCC-CCCEEEEecCCchhHHHHHHHHhhcCCCcEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG-RIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 159 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~-~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vig 159 (277)
+++.+.+++++++.++++|+++|.|+.+ +.||.++++||++|++. .||+||+|+|+||+++|++.+|+..+|.+||++
T Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~n~~~-~~g~~~~~~Ei~~q~~~~~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~ 185 (244)
T cd00640 107 DDAIALAKELAEEDPGAYYVNQFDNPAN-IAGQGTIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALKELLPNVKVIG 185 (244)
T ss_pred HHHHHHHHHHHHhCCCCEecCCCCCHHH-HHHHHHHHHHHHHHcCCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEE
Confidence 8889999999988568999999999988 78999999999999966 599999999999999999999999999999999
Q ss_pred EecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcC
Q 023801 160 IEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 239 (277)
Q Consensus 160 V~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~ 239 (277)
|++ +++.|+|+|++++++.|++++|+++||++|++++++.++.++.
T Consensus 186 v~~----------------------------------~~~~v~d~~~~~a~~~l~~~~gi~~~pssa~~~aa~~~~~~~~ 231 (244)
T cd00640 186 VEP----------------------------------EVVTVSDEEALEAIRLLAREEGILVEPSSAAALAAALKLAKKL 231 (244)
T ss_pred Eee----------------------------------eEEEECHHHHHHHHHHHHHHcCceECHhHHHHHHHHHHHHHhc
Confidence 997 7899999999999999999999999999999999999988775
Q ss_pred CCCCCeEEEEecC
Q 023801 240 ENAGKLIVVIFPS 252 (277)
Q Consensus 240 ~~~~~~vv~i~~~ 252 (277)
.++++||+++|+
T Consensus 232 -~~~~~vv~v~tg 243 (244)
T cd00640 232 -GKGKTVVVILTG 243 (244)
T ss_pred -CCCCEEEEEeCC
Confidence 367889999843
No 59
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=5.5e-45 Score=327.29 Aligned_cols=259 Identities=18% Similarity=0.216 Sum_probs=211.0
Q ss_pred CChhHHHHHHHHHHc----------------CCCCC--CCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHH
Q 023801 1 MCRIGYSMISDAEAK----------------GLITP--GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~----------------g~l~~--g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~ 62 (277)
|||++.+.|.+++++ +.+.+ +.++||++|+||||+|+|++|+.+|++|+||||+++++.|+.
T Consensus 55 K~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~ 134 (376)
T TIGR01747 55 KMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGEKMGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVE 134 (376)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHhhcCCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHH
Confidence 799999999998763 22221 236799999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecC-----CCCC--CcchhhhhhchHHHHHhhhCC----CCCEE
Q 023801 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQ-----QFEN--PANPKIHYETTGPELWKGSGG----RIDAL 131 (277)
Q Consensus 63 ~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~--~~~~~~g~~t~~~Ei~~Q~~~----~~d~i 131 (277)
+|+.|||+|+++++ +|+++.+.+.+++++. ++++++ +|+| |.. ++||+|+++||++|+++ .||+|
T Consensus 135 ~i~~~GAeVi~v~~--~~~~a~~~a~~~~~~~-g~~~~~~~~~~~~~~~~~~i-i~G~~Tia~Ei~eQl~~~~~~~pD~v 210 (376)
T TIGR01747 135 NILNLGAECTITDM--NYDDTVRLAMQMAQQH-GWVVVQDTAWEGYEKIPTWI-MQGYATLADEAVEQLREMGSVTPTHV 210 (376)
T ss_pred HHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CcEEeccccccccccCCchH-HHHHHHHHHHHHHHhhccCCCCCCEE
Confidence 99999999999985 6888888999888876 678876 4655 443 78999999999999952 69999
Q ss_pred EEecCCchhHHHHHHHHhhcCC--CcEEEEEecCCCCccC----C--CCC------CCcccCccCCCC---CccCccccc
Q 023801 132 VSGIGTGGTITGAGKFLKEKNP--NIKLYGIEPTESPVLS----G--GKP------GPHKIQGIGAGF---VPGVLEVNI 194 (277)
Q Consensus 132 v~pvG~Gg~~aGi~~~~~~~~~--~~~vigV~~~~~~~~~----~--~~~------~~~~~~gl~~~~---~~~~~~~~~ 194 (277)
|+|+|+||+++|++.++++..+ .++|++|||++++++. . +++ ..+.++||+.+. .++.+..+.
T Consensus 211 vvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~ga~~~~~s~~~~~g~~~~~~~~~~Tiadgl~~~~~~~~~~~~~~~~ 290 (376)
T TIGR01747 211 LLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDKADCLYQSAVKKDGDIVNVGGDMATIMAGLACGEPNPISWEILRNC 290 (376)
T ss_pred EECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCHHHHHHHhcCCCeEEcCCCccccccccccCCcchHHHHHHHhc
Confidence 9999999999999999987643 3799999999998763 1 322 124567777643 245566788
Q ss_pred cCeEEEeCHHHHHHHHHHHHHHc----CCeeeccHHHHHHHHHH---------HHhcCC-CCCCeEEEEecCCCCCCcch
Q 023801 195 IDEVVQVSSDEAIETAKLLALKE----GLFVGISSGGAAAAAIE---------IAKRPE-NAGKLIVVIFPSFGERYLSS 260 (277)
Q Consensus 195 ~~~~~~v~d~e~~~a~~~l~~~~----gi~~~p~sg~alaa~~~---------~~~~~~-~~~~~vv~i~~~gG~~~~~~ 260 (277)
.+.++.|+|+|+.++|+.|++.. ++++||+++++++++.. +.+++. .++++||+|+ |||+.+.+
T Consensus 291 ~~~~v~V~D~ei~~A~~~L~~~~g~~~~i~~epaga~~la~l~~~~~~~~~~~~~~~~~~~~~~~vvvi~-t~gn~d~~- 368 (376)
T TIGR01747 291 TSQFISAQDSVAAKGMRVLGAPYGGDPRIISGESGAVGLGLLAAVMYHPQYQSLMEKLQLDKDAVVLVIS-TEGDTDPD- 368 (376)
T ss_pred CCEEEEcCHHHHHHHHHHHhcccCCCCeEeeeCchHHHHHHHHHHHhCchHHHHHHHcCCCCCCEEEEEe-CCCCCCHH-
Confidence 99999999999999999999855 59999999999988873 333333 3578899998 99996555
Q ss_pred hccHHH
Q 023801 261 VLFESV 266 (277)
Q Consensus 261 ~~~~~~ 266 (277)
.|.++
T Consensus 369 -~~~~~ 373 (376)
T TIGR01747 369 -HYREI 373 (376)
T ss_pred -HHHHH
Confidence 55543
No 60
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=6.1e-45 Score=329.01 Aligned_cols=250 Identities=17% Similarity=0.070 Sum_probs=206.9
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.++|.++.++|. +.||++||||||+|+|++|+++|++|+||||+++++.+...++.+|++|+.+++ +|
T Consensus 101 KdRga~~~i~~a~~~g~-----~~Vv~aSsGN~g~alA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~g--~~ 173 (398)
T TIGR03844 101 KELEALPTMQRLKERGG-----KTLVVASAGNTGRAFAEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVDG--DY 173 (398)
T ss_pred HHHHHHHHHHHHHHcCC-----CEEEEECCCHHHHHHHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECCC--CH
Confidence 79999999999999885 679999999999999999999999999999998654444445789999999985 78
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcC-------C
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN-------P 153 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~-------~ 153 (277)
+++.+.++++++++ +++..++++||.. ++|++|+++||++|++..||+||+|+|+|+++.|++.+++++. .
T Consensus 174 d~a~~~a~~~a~~~-g~~~~~~~~~p~~-ieG~~Ti~~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~ 251 (398)
T TIGR03844 174 TDAIALADRIATLP-GFVPEGGARNVAR-RDGMGTVMLDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSK 251 (398)
T ss_pred HHHHHHHHHHHHhC-CccccCCCCCHHH-HhhHHHHHHHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCC
Confidence 99999999998876 6654566678877 8999999999999996449999999999998999999998742 3
Q ss_pred CcEEEEEecCCCCccC----CCCCC---------------CcccCccCCCCCcc-------CccccccCeEEEeCHHHHH
Q 023801 154 NIKLYGIEPTESPVLS----GGKPG---------------PHKIQGIGAGFVPG-------VLEVNIIDEVVQVSSDEAI 207 (277)
Q Consensus 154 ~~~vigV~~~~~~~~~----~~~~~---------------~~~~~gl~~~~~~~-------~~~~~~~~~~~~v~d~e~~ 207 (277)
.||+++||+++++++. .+.+. .+..+++..+..+. ....++.++++.|+|+|++
T Consensus 252 ~P~l~~VQ~eg~~p~~~a~~~g~~~~~~~~~~~~~~~~~~~t~a~~l~i~~p~~~~~~~~l~air~~~g~~v~Vsd~eI~ 331 (398)
T TIGR03844 252 LPRLHLAQNLPFVPMVNAWQEGRREIIPESDMPDAENSIEEVYSDVLTNRTPPYGVTGGVFDALIATGGQMYGVSNKEAV 331 (398)
T ss_pred CCCEEEEEcCCchHHHHHHHcCCCccccccCCccccccccceecceeeeCCCCcchHHHHHHHHHHhCCEEEEECHHHHH
Confidence 4799999999998663 22211 12344553332222 2235678899999999999
Q ss_pred HHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCC-CCCeEEEEecCCCCCCcc
Q 023801 208 ETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN-AGKLIVVIFPSFGERYLS 259 (277)
Q Consensus 208 ~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~-~~~~vv~i~~~gG~~~~~ 259 (277)
++++.|++++|+++||+||+++|+++++.+++.. ++++||+++|++|.|++.
T Consensus 332 ~A~~~l~~~~gi~vEpa~A~alAal~k~~~~g~i~~~~~Vv~vlTG~glK~~~ 384 (398)
T TIGR03844 332 SAGKLFEESEGIDILPAAAVAVAALVKAVESGFIGPDDDILLNITGGGYKRLR 384 (398)
T ss_pred HHHHHHHhhCCccccccHHHHHHHHHHHHHhCCCCCCCeEEEEECCcchhhHH
Confidence 9999999999999999999999999999887764 788999999888988875
No 61
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=1.7e-44 Score=321.23 Aligned_cols=249 Identities=22% Similarity=0.228 Sum_probs=206.9
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKG 79 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~ 79 (277)
|||++.+++.++.++|. .+||++||||||+|+|++|+.+|++|+||+|+. +++.|+.+++.+||+|+.+++ +
T Consensus 55 KdR~a~~~l~~a~~~g~-----~~vv~aSsGN~g~a~A~~a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~--~ 127 (328)
T TIGR00260 55 KDRGMAVALTKALELGN-----DTVLCASTGNTGAAAAAYAGKAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDG--N 127 (328)
T ss_pred HhhhHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecC--C
Confidence 89999999999999886 579999999999999999999999999999998 899999999999999999996 6
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCCC-CcchhhhhhchHHHHHhhhCC-CCCEEEEecCCchhHHHHHHHHhhcCC----
Q 023801 80 MKGAVQKAEEILAKTPNAYMLQQFEN-PANPKIHYETTGPELWKGSGG-RIDALVSGIGTGGTITGAGKFLKEKNP---- 153 (277)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~g~~t~~~Ei~~Q~~~-~~d~iv~pvG~Gg~~aGi~~~~~~~~~---- 153 (277)
++++.+.+++++++. ++++++++++ |.+ +.||.|+++||++|+++ .||+||+|+|+||+++|++.+|++...
T Consensus 128 ~~~~~~~~~~~~~~~-~~~~~~~~n~~~~~-~~g~~t~~~Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~ 205 (328)
T TIGR00260 128 FDDAQRLVKQLFGDK-EALGLNSVNSIPYR-LEGQKTYAFEAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGLD 205 (328)
T ss_pred HHHHHHHHHHHHhhc-CeeecccCCCCCeE-eeeehhHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHhcCCc
Confidence 888988899888775 4565655432 777 78999999999999964 799999999999999999999998410
Q ss_pred -CcEEEEEecCCCCccC-----CCCCC-----CcccCccCCCCCccC------ccccccCeEEEeCHHHHHHHHHHHHHH
Q 023801 154 -NIKLYGIEPTESPVLS-----GGKPG-----PHKIQGIGAGFVPGV------LEVNIIDEVVQVSSDEAIETAKLLALK 216 (277)
Q Consensus 154 -~~~vigV~~~~~~~~~-----~~~~~-----~~~~~gl~~~~~~~~------~~~~~~~~~~~v~d~e~~~a~~~l~~~ 216 (277)
.+++++|||.+++++. .++.. .+..++++.+. |.. +.+.++++.+.|+|+|++++++.|+++
T Consensus 206 ~~p~v~~Ve~~~~~~~~~~~~~~g~~~~~~~~~t~~~~l~~~~-p~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~ 284 (328)
T TIGR00260 206 SLPVKRGIQAEGAADIVRAFLESGQWEPIEDPATLSTAIDIGN-PANWERALELFRRSNGNAEDVSDEEILEAIKLLARE 284 (328)
T ss_pred cCCceeEEEcCCCChHHHHHHcCCCcCcCCCCCccCcceecCC-CCCHHHHHHHHHhcCCcEEecCHHHHHHHHHHHHHh
Confidence 3499999999985442 22221 22334443321 211 234678899999999999999999999
Q ss_pred cCCeeeccHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCCCCcc
Q 023801 217 EGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLS 259 (277)
Q Consensus 217 ~gi~~~p~sg~alaa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~ 259 (277)
+|+++||++|+++++++++.+++. .++++||+++|++|.|+.|
T Consensus 285 ~gi~~~pssa~alaa~~~~~~~~~~~~~~~vv~i~tG~~~k~~~ 328 (328)
T TIGR00260 285 EGYFVEPHSAVSVAALLKLVEKGTADPAERVVCALTGNGLKDPE 328 (328)
T ss_pred cCeeECchHHHHHHHHHHHHhCCCCCCCCcEEEEecCCCCCCCC
Confidence 999999999999999999888754 4678999999888888753
No 62
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=3.7e-44 Score=322.41 Aligned_cols=253 Identities=24% Similarity=0.242 Sum_probs=197.2
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEe-eCCchHHHHHHHHHHHCCCeEEEEeCCCCC---HHHHHHHHHcCCEEEEeCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIE-PTSGNTGIGLAFMAAAKQYRLIITMPASMS---LERRIILRAFGAELVLTDP 76 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~-aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~---~~~~~~~~~~Ga~v~~~~~ 76 (277)
|||.+..++..+.++|. +.+|+ +||||||+|+|++|+++|++|+||+|+..+ +.|+.+++.+||+|+.++.
T Consensus 66 K~R~a~~~~~~a~~~g~-----~~vv~~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~ 140 (365)
T cd06446 66 KINNALGQALLAKRMGK-----KRVIAETGAGQHGVATATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPS 140 (365)
T ss_pred hHHHHHHHHHHHHHcCC-----CeEEEecCchHHHHHHHHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCC
Confidence 89999999999999886 33555 799999999999999999999999998643 3678899999999999985
Q ss_pred C-CChHHHHHHHHHH-HHhC-CCeEecCCCC----CCcchhhhhhchHHHHHhhhC----CCCCEEEEecCCchhHHHHH
Q 023801 77 A-KGMKGAVQKAEEI-LAKT-PNAYMLQQFE----NPANPKIHYETTGPELWKGSG----GRIDALVSGIGTGGTITGAG 145 (277)
Q Consensus 77 ~-~~~~~~~~~a~~~-~~~~-~~~~~~~~~~----~~~~~~~g~~t~~~Ei~~Q~~----~~~d~iv~pvG~Gg~~aGi~ 145 (277)
. ..+.+++..+.+. .++. ..+|+++++. ++.++++||+|+++||++|+. ..||+||+|+|+|||++|++
T Consensus 141 ~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~ 220 (365)
T cd06446 141 GSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYPNMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLF 220 (365)
T ss_pred CCCcHHHHHHHHHHHHHhccCCceEecccccCCCCchHHHHHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHH
Confidence 3 2356665444443 3332 2344443331 233568899999999999995 26999999999999999999
Q ss_pred HHHhhcCCCcEEEEEecCCCCccCCC--------CC--------------------CCcccCccCCCC-Cc--cCccccc
Q 023801 146 KFLKEKNPNIKLYGIEPTESPVLSGG--------KP--------------------GPHKIQGIGAGF-VP--GVLEVNI 194 (277)
Q Consensus 146 ~~~~~~~~~~~vigV~~~~~~~~~~~--------~~--------------------~~~~~~gl~~~~-~~--~~~~~~~ 194 (277)
++++. .+++|||+|||.+++.+... .. ..+..++++... .+ +.+...+
T Consensus 221 ~g~~~-~~~~~vigVep~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~ 299 (365)
T cd06446 221 YPFIN-DKDVKLIGVEAGGCGLETGGHAAYLFGGTAGVLHGLKMYTLQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDSG 299 (365)
T ss_pred HHHHh-CCCceEEEEcCCCCccccccceeeccCCCcceecchhhhccccccCCCCCcccccccccCCCCCHHHHHHHHhC
Confidence 98887 46899999999998776421 11 011223343211 11 1234567
Q ss_pred cCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcch
Q 023801 195 IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 260 (277)
Q Consensus 195 ~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 260 (277)
+|+++.|+|+|++++++.|++++||++||+||+++++++++.++. .++++||+|+|+.|+||+++
T Consensus 300 ~d~~v~V~d~e~~~a~r~la~~eGi~~epssgaalAa~~~~~~~~-~~~~~Vv~i~~g~G~k~~~~ 364 (365)
T cd06446 300 RVEYVAVTDEEALEAFKLLARTEGIIPALESSHAIAYAIKLAKKL-GKEKVIVVNLSGRGDKDLQT 364 (365)
T ss_pred CceEEEeChHHHHHHHHHHHHhcCceeCccchHHHHHHHHHHHhc-CCCCeEEEEeCCCCcccccc
Confidence 899999999999999999999999999999999999999988775 36789999998889999986
No 63
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=2e-44 Score=317.82 Aligned_cols=247 Identities=22% Similarity=0.256 Sum_probs=197.3
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEee--CCchHHHHHHHHHHHCCCeEEEEeCCCCC--------HHHHHHHHHcCCE
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEP--TSGNTGIGLAFMAAAKQYRLIITMPASMS--------LERRIILRAFGAE 70 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~a--SsGN~g~a~A~aa~~~Gl~~~vvvp~~~~--------~~~~~~~~~~Ga~ 70 (277)
|||++.+++.+++++|. ++||++ |+||||+|+|++|+++|++|++|||.+.+ ..|+.+++.|||+
T Consensus 36 K~R~~~~~l~~a~~~g~-----~~vv~~ggs~GN~g~alA~~a~~~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~ 110 (307)
T cd06449 36 KIRKLEYLLPDALAKGA-----DTLVTVGGIQSNHTRQVAAVAAKLGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGAD 110 (307)
T ss_pred HHHHHHHHHHHHHHcCC-----CEEEECCCchhHHHHHHHHHHHHcCCeEEEEecCCCCcccccccccccHHHHHHCCCE
Confidence 89999999999999987 679998 68999999999999999999999999876 4689999999999
Q ss_pred EEEeCCCC--ChHHHHHHHHH-HHHhCCCeEe-cCCC-CCCcchhhhhhchHHHHHhhhCC---CCCEEEEecCCchhHH
Q 023801 71 LVLTDPAK--GMKGAVQKAEE-ILAKTPNAYM-LQQF-ENPANPKIHYETTGPELWKGSGG---RIDALVSGIGTGGTIT 142 (277)
Q Consensus 71 v~~~~~~~--~~~~~~~~a~~-~~~~~~~~~~-~~~~-~~~~~~~~g~~t~~~Ei~~Q~~~---~~d~iv~pvG~Gg~~a 142 (277)
|+.++... ....+.+.+.+ +.++.+..++ .+++ +||.+ +.||.++++||++|++. .||+||+|+|||||++
T Consensus 111 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~ 189 (307)
T cd06449 111 VRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLG-GLGYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHA 189 (307)
T ss_pred EEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCccc-HHHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHH
Confidence 99998632 11223333333 3333323344 4454 38888 78999999999999954 6999999999999999
Q ss_pred HHHHHHhhcCCCcEEEEEecCCCCccCCCCCC---CcccC--ccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHc
Q 023801 143 GAGKFLKEKNPNIKLYGIEPTESPVLSGGKPG---PHKIQ--GIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKE 217 (277)
Q Consensus 143 Gi~~~~~~~~~~~~vigV~~~~~~~~~~~~~~---~~~~~--gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~ 217 (277)
|++++|++.++.+|||+|+|.+++.+...+.. ...+. ++..+..+..++.+++++.+.|+|+|++++++.|++++
T Consensus 190 G~~~~~~~~~~~~~ii~V~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~~ 269 (307)
T cd06449 190 GLSVGLAALGRQRRVIGIDASAKPEKTKAQVLRIAQAKLAEEGLEVKEEDVVLDDDYAAPEYGIPNDETIEAIKLCARLE 269 (307)
T ss_pred HHHHHHHhcCCCCeEEEEEecCchHHHHHHHHHHHHHHHHHcCCCCCcccEEEecCcccCCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999998654311100 01121 22222335556778899999999999999999999999
Q ss_pred CCeeec-cHHHHHHHHHHHHhcCCC-CCCeEEEEecCCC
Q 023801 218 GLFVGI-SSGGAAAAAIEIAKRPEN-AGKLIVVIFPSFG 254 (277)
Q Consensus 218 gi~~~p-~sg~alaa~~~~~~~~~~-~~~~vv~i~~~gG 254 (277)
||++|| |+|+++++++++++++.. ++++||+|| |||
T Consensus 270 Gi~~ep~ytg~~~aa~~~~~~~~~~~~~~~vv~i~-TGG 307 (307)
T cd06449 270 GIITDPVYEGKSMQGMIDLVRNGEFKEGSKVLFIH-LGG 307 (307)
T ss_pred CCccccchHHHHHHHHHHHHhcCCCCCCCeEEEEe-CCC
Confidence 999999 899999999999887653 578999999 776
No 64
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=8.1e-44 Score=321.79 Aligned_cols=260 Identities=18% Similarity=0.194 Sum_probs=204.1
Q ss_pred CChhHHHHHHHHHH--cCCC--------------C--CCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHH
Q 023801 1 MCRIGYSMISDAEA--KGLI--------------T--PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62 (277)
Q Consensus 1 ~dR~a~~~v~~a~~--~g~l--------------~--~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~ 62 (277)
|||++.+.|.++.+ .|.. + ....+||++|+||||+|+|++|+++|++|+||||+++++.|+.
T Consensus 74 K~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~ 153 (396)
T TIGR03528 74 KVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKLGDITFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLE 153 (396)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhccCcEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHH
Confidence 79999999998643 3310 0 0123799999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecC-----CCCCC-cchhhhhhchHHHHHhhhC----CCCCEEE
Q 023801 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQ-----QFENP-ANPKIHYETTGPELWKGSG----GRIDALV 132 (277)
Q Consensus 63 ~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~-~~~~~g~~t~~~Ei~~Q~~----~~~d~iv 132 (277)
+++.|||+|+.+++ +++++.+.+++++++. +++|++ +|+|. ...++||+|+++||++|++ +.||+||
T Consensus 154 ~ir~~GAeVi~~~~--~~~~a~~~a~~~a~~~-g~~~v~~~~~~~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vv 230 (396)
T TIGR03528 154 NIRAEGAECTITDL--NYDDAVRLAWKMAQEN-GWVMVQDTAWEGYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVF 230 (396)
T ss_pred HHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CcEeeccccccccccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEE
Confidence 99999999999985 6888999999998876 778875 67652 2236899999999999995 2699999
Q ss_pred EecCCchhHHHHHHHHhhc-CCC-cEEEEEecCCCCccCC------CCC------CCcccCccCCCC---CccCcccccc
Q 023801 133 SGIGTGGTITGAGKFLKEK-NPN-IKLYGIEPTESPVLSG------GKP------GPHKIQGIGAGF---VPGVLEVNII 195 (277)
Q Consensus 133 ~pvG~Gg~~aGi~~~~~~~-~~~-~~vigV~~~~~~~~~~------~~~------~~~~~~gl~~~~---~~~~~~~~~~ 195 (277)
+|+|+||+++|++.++++. .+. ++||+|||++++++.. +++ ..+.++|++.+. .++.+..+++
T Consensus 231 vpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~~l~~s~~~~~g~~~~~~g~~~Tiadgl~~~~p~~~~~~~~~~~~ 310 (396)
T TIGR03528 231 LQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAADCLYRSAIADDGKPHFVTGDMATIMAGLACGEPNTIGWEILRDYA 310 (396)
T ss_pred EcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCchHHHHHHhcCCCEEEeCCCccceecccccCCccHHHHHHHHHhC
Confidence 9999999999999989554 343 5999999999987641 221 123456665432 2344556789
Q ss_pred CeEEEeCHHHHHHHHHHHHH----HcCCeeeccHHHHHHHHHH---------HHhcCC-CCCCeEEEEecCCCCCCcchh
Q 023801 196 DEVVQVSSDEAIETAKLLAL----KEGLFVGISSGGAAAAAIE---------IAKRPE-NAGKLIVVIFPSFGERYLSSV 261 (277)
Q Consensus 196 ~~~~~v~d~e~~~a~~~l~~----~~gi~~~p~sg~alaa~~~---------~~~~~~-~~~~~vv~i~~~gG~~~~~~~ 261 (277)
|+++.|+|+|+.++++.|++ ++++++||+++++++++.. +.+++. .++++||+|+ ||||.+.+
T Consensus 311 d~~v~VsD~ei~~a~r~La~~~~~~~~~~~epsga~~~Aalaa~~~~~~~~~~~~~~~~~~~~~vv~i~-tggn~d~~-- 387 (396)
T TIGR03528 311 SQFISCPDWVAAKGMRILGNPLKGDPRVISGESGAVGTGLLAAVMTNPDYKELREKLQLDKNSRVLLIS-TEGDTDPD-- 387 (396)
T ss_pred CeEEEECHHHHHHHHHHHhcccCCCCceeecCcHHHHHHHHHHHHhCchhHHHHHhcCCCCCCEEEEEE-CCCCCCHH--
Confidence 99999999999999999998 5799999999999955532 222222 3578999999 99996555
Q ss_pred ccHHH
Q 023801 262 LFESV 266 (277)
Q Consensus 262 ~~~~~ 266 (277)
.|.++
T Consensus 388 ~~~~~ 392 (396)
T TIGR03528 388 NYRKI 392 (396)
T ss_pred HHHHH
Confidence 45443
No 65
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=7.7e-43 Score=314.17 Aligned_cols=255 Identities=24% Similarity=0.245 Sum_probs=199.5
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCH---HHHHHHHHcCCEEEEeCC-
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL---ERRIILRAFGAELVLTDP- 76 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~---~~~~~~~~~Ga~v~~~~~- 76 (277)
|||.+..++..++++|+ .+.|+++|+||||+|+|++|+++|++|+||||+..++ .|+.+|+.+||+|+.++.
T Consensus 94 K~r~al~~~l~A~~~G~----~~vI~etgsGnhG~A~A~aaa~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g 169 (402)
T PRK13028 94 KINNCLGQALLAKRMGK----KRLIAETGAGQHGVATATAAALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRG 169 (402)
T ss_pred HHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHHHHcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcCC
Confidence 79999999999999996 1356679999999999999999999999999986443 578899999999999984
Q ss_pred CCChHHHHHHHHH-HHHhCCCeEecCC-C----CCCcchhhhhhchHHHHHhhhC----CCCCEEEEecCCchhHHHHHH
Q 023801 77 AKGMKGAVQKAEE-ILAKTPNAYMLQQ-F----ENPANPKIHYETTGPELWKGSG----GRIDALVSGIGTGGTITGAGK 146 (277)
Q Consensus 77 ~~~~~~~~~~a~~-~~~~~~~~~~~~~-~----~~~~~~~~g~~t~~~Ei~~Q~~----~~~d~iv~pvG~Gg~~aGi~~ 146 (277)
...++++.+.+.+ +.++.++.+|+.+ . ..|.++..||++++.||.+|+. ..||+||+|+|+||+++|++.
T Consensus 170 ~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~ 249 (402)
T PRK13028 170 GRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDFQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFS 249 (402)
T ss_pred CCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHHHhHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHH
Confidence 3467888777754 4554335566532 1 1244545699999999999973 359999999999999999999
Q ss_pred HHhhcCCCcEEEEEecCC--------CCccCCCCCC--------------------CcccCccCCCCC-cc--Ccccccc
Q 023801 147 FLKEKNPNIKLYGIEPTE--------SPVLSGGKPG--------------------PHKIQGIGAGFV-PG--VLEVNII 195 (277)
Q Consensus 147 ~~~~~~~~~~vigV~~~~--------~~~~~~~~~~--------------------~~~~~gl~~~~~-~~--~~~~~~~ 195 (277)
+|++ .++++||||||.+ ++++..+++. .+...||..+.+ |. .+.....
T Consensus 250 ~f~~-~~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~~~g~~~~~l~~~~g~~~~~~sia~gl~~~~vgp~~~~l~~~~~ 328 (402)
T PRK13028 250 AFLD-DESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIHGFKSYVLQDEDGEPAPVHSIAAGLDYPGVGPEHAYLKDIGR 328 (402)
T ss_pred HHHh-CCCceEEEEecCCCCcccccccccccCCCcceecccceeeccccCCCcCCccceeccccCCCCCHHHHHHHHhcC
Confidence 9986 4889999999998 5556544331 112233332111 11 1223445
Q ss_pred CeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchh
Q 023801 196 DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSV 261 (277)
Q Consensus 196 ~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~ 261 (277)
++.+.|+|+|++++++.|+++|||+++++|+++++++++++++. .++++||+++|++|+||++++
T Consensus 329 ~~~v~VtD~eal~a~~~La~~eGIi~~~~sa~alA~a~~~a~~l-~~~~~VVv~lsG~G~kd~~~~ 393 (402)
T PRK13028 329 VEYVTATDEEALDAFFLLSRTEGIIPALESSHAVAYAIKLAPEL-SKDETILVNLSGRGDKDIDYV 393 (402)
T ss_pred cEEEEECHHHHHHHHHHHHHhcCCeeccHHHHHHHHHHHhhhhc-CCCCeEEEEECCCCccCHHHH
Confidence 78999999999999999999999999999999999999987653 368899999977799999864
No 66
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=5.9e-43 Score=316.05 Aligned_cols=255 Identities=20% Similarity=0.247 Sum_probs=195.3
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCC-CCH--HHHHHHHHcCCEEEEeCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSL--ERRIILRAFGAELVLTDPA 77 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~-~~~--~~~~~~~~~Ga~v~~~~~~ 77 (277)
|||++..++..++++|. + +.|+++||||||+|+|++|+++|++|+||||+. .+. .|+++|+.|||+|+.++..
T Consensus 82 K~R~a~~~~~~a~~~g~---~-~vi~e~ssGN~G~alA~~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~ 157 (385)
T TIGR00263 82 KINNALGQALLAKRMGK---K-RIIAETGAGQHGVATATAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSG 157 (385)
T ss_pred hHHHHHHHHHHHHHcCC---C-EEEEEcCcHHHHHHHHHHHHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECCC
Confidence 89999999999998885 1 345579999999999999999999999999985 343 5788999999999999852
Q ss_pred -CChHHHH-HHHHHHHHhCCCeEec-CCCCC----CcchhhhhhchHHHHHhhhC----CCCCEEEEecCCchhHHHHHH
Q 023801 78 -KGMKGAV-QKAEEILAKTPNAYML-QQFEN----PANPKIHYETTGPELWKGSG----GRIDALVSGIGTGGTITGAGK 146 (277)
Q Consensus 78 -~~~~~~~-~~a~~~~~~~~~~~~~-~~~~~----~~~~~~g~~t~~~Ei~~Q~~----~~~d~iv~pvG~Gg~~aGi~~ 146 (277)
..++++. +.+++++++.++.+|+ +++.+ |.++..||+|+++||++|+. ..||+||+|+|+||+++|++.
T Consensus 158 ~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~ 237 (385)
T TIGR00263 158 SGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRDFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFY 237 (385)
T ss_pred CCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHHHHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHH
Confidence 3466664 4445556654455555 44432 24446899999999999973 258999999999999999999
Q ss_pred HHhhcCCCcEEEEEecCCCC--------ccCCCCCC--------------------CcccCccCCCCC-c--cCcccccc
Q 023801 147 FLKEKNPNIKLYGIEPTESP--------VLSGGKPG--------------------PHKIQGIGAGFV-P--GVLEVNII 195 (277)
Q Consensus 147 ~~~~~~~~~~vigV~~~~~~--------~~~~~~~~--------------------~~~~~gl~~~~~-~--~~~~~~~~ 195 (277)
++.. .|++|||||||+++. .+..+.+. .+...+++.... | +.+.....
T Consensus 238 ~~~~-~~~~~iigVe~~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~tia~gl~~~~~~p~~~~~~~~~~ 316 (385)
T TIGR00263 238 AFID-DPSVQLIGVEAGGLGIDTDKHAATLAKGSPGVLHGMKTYLLQDEDGQILEAHSVSAGLDYPGVGPEHAYLHETGR 316 (385)
T ss_pred HHhh-CCCCeEEEEEeCCCcccchhhhhhhhcCCeeEecCcccccccCCCCcccccceeeccccCCCCCHHHHHHHhcCC
Confidence 8865 689999999999852 22222211 011223322111 1 12334556
Q ss_pred CeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchh
Q 023801 196 DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSV 261 (277)
Q Consensus 196 ~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~ 261 (277)
++++.|+|+|++++++.|+++|||+++|+||++++++++++++. .++++||+++|++|++|++++
T Consensus 317 ~~~v~Vsd~e~~~a~~~la~~egi~~~~ssaaalaa~~~~~~~l-~~~~~Vv~i~~g~G~~d~~~~ 381 (385)
T TIGR00263 317 ATYEAITDDEALEAFKLLSRNEGIIPALESSHALAHLEKIAPTL-PKDQIVVVNLSGRGDKDIFTI 381 (385)
T ss_pred eEEEEECHHHHHHHHHHHHHhcCCeechHHHHHHHHHHHHHHhC-CCCCeEEEEeCCCCcCCHHHH
Confidence 78999999999999999999999999999999999999987653 368899999988899998853
No 67
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=6.5e-44 Score=315.30 Aligned_cols=248 Identities=19% Similarity=0.136 Sum_probs=196.3
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEee--CCchHHHHHHHHHHHCCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEeCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEP--TSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPA 77 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~a--SsGN~g~a~A~aa~~~Gl~~~vvvp~~~-~~~~~~~~~~~Ga~v~~~~~~ 77 (277)
|||.+.+++.+++++|. ++||++ |+||||+|+|++|+++|+++++|||... +..+..+++.|||+|+.+++.
T Consensus 40 K~R~~~~~l~~a~~~g~-----~~vv~~g~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~~ 114 (311)
T TIGR01275 40 KIRKLEYLLADALSKGA-----DTVITVGAIQSNHARATALAAKKLGLDAVLVLREKEELNGNLLLDKLMGAETRVYSAE 114 (311)
T ss_pred hHHHHHHHHHHHHHcCC-----CEEEEcCCchhHHHHHHHHHHHHhCCceEEEecCCccCCCCHHHHHHcCCEEEEECch
Confidence 89999999999999987 679998 6699999999999999999999999975 456677889999999999852
Q ss_pred CChHHHHHHHHHHHH----hCC-CeEecCCCCCCcchhhhhhchHHHHHhhhCC--CCCEEEEecCCchhHHHHHHHHhh
Q 023801 78 KGMKGAVQKAEEILA----KTP-NAYMLQQFENPANPKIHYETTGPELWKGSGG--RIDALVSGIGTGGTITGAGKFLKE 150 (277)
Q Consensus 78 ~~~~~~~~~a~~~~~----~~~-~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~--~~d~iv~pvG~Gg~~aGi~~~~~~ 150 (277)
++.+..+.+.++++ +.+ .+++.+++.||.+ ..|+.++++||++|++. .||+||+|+|||||++|++++||+
T Consensus 115 -~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~g~~~~~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~ 192 (311)
T TIGR01275 115 -EYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLG-TLGYVEAVLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSI 192 (311)
T ss_pred -hhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHH-HHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHH
Confidence 34444444444432 322 2445577788887 67788899999999953 699999999999999999999999
Q ss_pred cCCCcEEEEEecCCCCccCCCC---CCCcccCccCCC-CCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeec-cH
Q 023801 151 KNPNIKLYGIEPTESPVLSGGK---PGPHKIQGIGAG-FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGI-SS 225 (277)
Q Consensus 151 ~~~~~~vigV~~~~~~~~~~~~---~~~~~~~gl~~~-~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p-~s 225 (277)
++|+++||||+++.+.+..... ...+..++++.+ ...+.+..++.+..+.|+|+|++++++.|++++|+++|| |+
T Consensus 193 ~~~~~~vigV~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~la~~~gi~vep~~s 272 (311)
T TIGR01275 193 LNEDIRPVGVAVGRFGEDMTDKFVNLVKEIAEGLEVKASEVIPELDDYSGPGYGKPTSEVAEIVKKVASREGIILDPVYT 272 (311)
T ss_pred hCCCCcEEEEEecccHHHHHHHHHHHHHHHHHHhCCCCCCCEEEECCcccCcCCCCCHHHHHHHHHHHHHhCCccCcchH
Confidence 9999999999987653211100 011234455443 223344567788899999999999999999999999999 69
Q ss_pred HHHHHHHHHHHhcCCCCCCeEEEEecCCCCC
Q 023801 226 GGAAAAAIEIAKRPENAGKLIVVIFPSFGER 256 (277)
Q Consensus 226 g~alaa~~~~~~~~~~~~~~vv~i~~~gG~~ 256 (277)
|++++++++++++++.++++||+|+ |||+.
T Consensus 273 g~~~aa~~~~~~~~~~~~~~vv~i~-tGG~~ 302 (311)
T TIGR01275 273 GKAFYGLIDLIRKGELGEKGILFIH-TGGIS 302 (311)
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEE-CCCcc
Confidence 9999999998877655677899999 88873
No 68
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=1.6e-42 Score=314.61 Aligned_cols=257 Identities=22% Similarity=0.280 Sum_probs=196.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEe-eCCchHHHHHHHHHHHCCCeEEEEeCCCC---CHHHHHHHHHcCCEEEEeCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIE-PTSGNTGIGLAFMAAAKQYRLIITMPASM---SLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~-aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~---~~~~~~~~~~~Ga~v~~~~~ 76 (277)
|||+|..++.+++++|. +++++ +|+||||+|+|++|+.+|++|+||||... ++.|+.+|+.|||+|+.++.
T Consensus 101 K~R~A~~~~~~a~~~G~-----~~~vtetssGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~ 175 (419)
T TIGR01415 101 KINTAIAQAYYAKIEGA-----KRLVTETGAGQWGSALSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPS 175 (419)
T ss_pred HHHHHHHHHHHHHHcCC-----CeEEEecCchHHHHHHHHHHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECC
Confidence 89999999999999996 34665 68999999999999999999999999854 56889999999999999986
Q ss_pred CCChHH------------------HHHHHHHHHHhCC-CeEecCCCCCCcchhhhhhchHHHHHhhhCC---CCCEEEEe
Q 023801 77 AKGMKG------------------AVQKAEEILAKTP-NAYMLQQFENPANPKIHYETTGPELWKGSGG---RIDALVSG 134 (277)
Q Consensus 77 ~~~~~~------------------~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~---~~d~iv~p 134 (277)
. +++ +++.+.+.+++.+ ..|+++++.|+ ...||.++|+||++|+.. .||+||+|
T Consensus 176 ~--~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~~~~y~~~~~~n~--~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~ 251 (419)
T TIGR01415 176 E--FTEFGREVLKEDPDHPGSLGIAISEAIEYALSDEDTKYSLGSVLNH--VLLHQTVIGLEAKKQMEEAGEDPDVIIGC 251 (419)
T ss_pred c--hhhHHHHhhhcccccccchHHHHHHHHHHHHhCCCCEEEeCCCCcH--HHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 3 222 2456666666544 44566665553 367999999999999953 49999999
Q ss_pred cCCchhHHHHHHHHhhc----CCCcEEEEEecCCCCccCCCCC----------CC-cccCccCCCCCccCc---------
Q 023801 135 IGTGGTITGAGKFLKEK----NPNIKLYGIEPTESPVLSGGKP----------GP-HKIQGIGAGFVPGVL--------- 190 (277)
Q Consensus 135 vG~Gg~~aGi~~~~~~~----~~~~~vigV~~~~~~~~~~~~~----------~~-~~~~gl~~~~~~~~~--------- 190 (277)
+|+||+++|++.+|.+. .+++|||+|||++++++..+.. .+ ..+.+++.++.|..+
T Consensus 252 vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~~l~~g~~~yd~~~~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~~ 331 (419)
T TIGR01415 252 VGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACPTLTRGEYRYDFGDTAGLTPLLKMYTLGHDFIPPPIHAGGLRYHG 331 (419)
T ss_pred eCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCChhhhcCcccccccccccCCcceeeeecCCCCCCcceeccccccCC
Confidence 99999999999888432 2579999999999987764321 11 234456655444322
Q ss_pred --------cccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCC--eEEEEecCCCCCCcch
Q 023801 191 --------EVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGK--LIVVIFPSFGERYLSS 260 (277)
Q Consensus 191 --------~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~--~vv~i~~~gG~~~~~~ 260 (277)
..+.+.+.+.|+|+|++++++.|+++|||+++|+||++++++++++++....++ +||+++++.|+ +|.
T Consensus 332 ~~~~~~~l~~~~~~~~~~V~d~e~~~a~r~la~~eGi~~epssa~alaaai~~a~~~~~~~~~~vvv~~lsG~G~--~d~ 409 (419)
T TIGR01415 332 VAPTLSLLVNLGIVEARAYDQEEAFEAAVIFAKTEGIVPAPESAHAIAAAIDEARKCRETGEEKVILFNLSGHGL--LDL 409 (419)
T ss_pred ccHHHHHHhhcCceEEEEECHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhcCcCCCCeEEEEEcCCCCc--CCH
Confidence 123445789999999999999999999999999999999999998887653333 45555522266 555
Q ss_pred hccHHHHH
Q 023801 261 VLFESVRK 268 (277)
Q Consensus 261 ~~~~~~~~ 268 (277)
..|++++.
T Consensus 410 ~~y~~~~~ 417 (419)
T TIGR01415 410 KAYAKYLH 417 (419)
T ss_pred HHHHHHhc
Confidence 57776653
No 69
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=2.5e-42 Score=313.72 Aligned_cols=259 Identities=22% Similarity=0.264 Sum_probs=199.2
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEe-eCCchHHHHHHHHHHHCCCeEEEEeCCC---CCHHHHHHHHHcCCEEEEeCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIE-PTSGNTGIGLAFMAAAKQYRLIITMPAS---MSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~-aSsGN~g~a~A~aa~~~Gl~~~vvvp~~---~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
|||+|..++.+++++|. +.+++ +|+||||+|+|++|+.+|++|+||||+. .++.|+.+|+.|||+|+.+++
T Consensus 110 K~R~A~~~a~~a~~~G~-----~~~vtetgsGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~ 184 (427)
T PRK12391 110 KPNTAVAQAYYNKKEGI-----KRLTTETGAGQWGSALALACALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPS 184 (427)
T ss_pred HHHHHHHHHHHHHHCCC-----CEEEEccCchHHHHHHHHHHHHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEECC
Confidence 89999999999999997 34665 5799999999999999999999999974 366889999999999999985
Q ss_pred CCC----------------hHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhC---CCCCEEEEecCC
Q 023801 77 AKG----------------MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSG---GRIDALVSGIGT 137 (277)
Q Consensus 77 ~~~----------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~---~~~d~iv~pvG~ 137 (277)
..+ ...+++.+.+.+++.++.+|...+.+ .+...||.++|+||++|+. ..||+||+|+|+
T Consensus 185 ~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~~s~~-~~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~ 263 (427)
T PRK12391 185 DLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYALGSVL-NHVLLHQTVIGLEAKKQLELAGEYPDVVIGCVGG 263 (427)
T ss_pred chhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEcCCCC-cHHHhhHHHHHHHHHHHHHhcCCCCCEEEEecCc
Confidence 311 11145666777766545455544432 2347899999999999995 369999999999
Q ss_pred chhHHHHHHHHhh---cC-CCcEEEEEecCCCCccCCCCC----------CC-cccCccCCCCCccCcc-----------
Q 023801 138 GGTITGAGKFLKE---KN-PNIKLYGIEPTESPVLSGGKP----------GP-HKIQGIGAGFVPGVLE----------- 191 (277)
Q Consensus 138 Gg~~aGi~~~~~~---~~-~~~~vigV~~~~~~~~~~~~~----------~~-~~~~gl~~~~~~~~~~----------- 191 (277)
||+++|++.+|.. .+ +++|||+|||++|+++..+.. .+ ..+.+++.++.|..+.
T Consensus 264 Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l~~g~~~~~~gd~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~g~~~ 343 (427)
T PRK12391 264 GSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTLTKGEYAYDFGDTAGLTPLLKMYTLGHDFVPPPIHAGGLRYHGMAP 343 (427)
T ss_pred hHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhhccccccccccccccCCccceeEecCCCCCCccccccccccCCchH
Confidence 9999999997733 34 889999999999988764311 11 2355666665444321
Q ss_pred ------ccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCC--CCCCeEEEEecCCCCCCcchhcc
Q 023801 192 ------VNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE--NAGKLIVVIFPSFGERYLSSVLF 263 (277)
Q Consensus 192 ------~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~--~~~~~vv~i~~~gG~~~~~~~~~ 263 (277)
...+.+.+.|+|+|++++++.|+++|||+++|+||++++++++++++.. .++++||+++|+.|+ +|...|
T Consensus 344 ~~~~l~~~~~~~~~~V~d~e~~~a~~~~a~~eGi~~~pss~~alaaa~~~a~~~~~~~~~~~iv~~lsG~G~--~d~~~y 421 (427)
T PRK12391 344 LVSLLVHEGLIEARAYPQTEVFEAAVLFARTEGIVPAPESSHAIAAAIDEALKAKEEGEEKVILFNLSGHGL--LDLAAY 421 (427)
T ss_pred HHHHHHhcCceEEEEECHHHHHHHHHHHHHHcCCeechHHHHHHHHHHHHHHhccccCCCCEEEEEeCCCCC--CCHHHH
Confidence 2233478999999999999999999999999999999999999887643 235667777633255 666688
Q ss_pred HHHH
Q 023801 264 ESVR 267 (277)
Q Consensus 264 ~~~~ 267 (277)
++++
T Consensus 422 ~~~l 425 (427)
T PRK12391 422 DAYL 425 (427)
T ss_pred HHHh
Confidence 7765
No 70
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=7.6e-43 Score=311.31 Aligned_cols=249 Identities=16% Similarity=0.176 Sum_probs=198.1
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEee--CCchHHHHHHHHHHHCCCeEEEEeCCCCC--------HHHHHHHHHcCCE
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEP--TSGNTGIGLAFMAAAKQYRLIITMPASMS--------LERRIILRAFGAE 70 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~a--SsGN~g~a~A~aa~~~Gl~~~vvvp~~~~--------~~~~~~~~~~Ga~ 70 (277)
|||.+..++.+++++|. .+|+++ |+||||+|+|++|+++|++|++|+|...+ ..|+.+++.|||+
T Consensus 51 K~R~~~~~l~~a~~~G~-----~~vvs~G~s~GN~g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~ 125 (337)
T PRK12390 51 KTRKLEYLVPDALAQGA-----DTLVSIGGVQSNHTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGAD 125 (337)
T ss_pred hHHHHHHHHHHHHHcCC-----CEEEEeCCCccHHHHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCE
Confidence 89999999999999998 678887 88999999999999999999999877554 2377799999999
Q ss_pred EEEeCCCC--ChHHHHHHHHHHHHhCCCeEe-cCCCCCC-cchhhhhhchHHHHHhh---hCCCCCEEEEecCCchhHHH
Q 023801 71 LVLTDPAK--GMKGAVQKAEEILAKTPNAYM-LQQFENP-ANPKIHYETTGPELWKG---SGGRIDALVSGIGTGGTITG 143 (277)
Q Consensus 71 v~~~~~~~--~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~~~~~g~~t~~~Ei~~Q---~~~~~d~iv~pvG~Gg~~aG 143 (277)
|+.++... .+.++++.+.+..++.++..| ++++.++ .....||.++++||++| ++.+||+||+|+|||||++|
T Consensus 126 v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaG 205 (337)
T PRK12390 126 VRLVPDGFDIGIRKSWEDALEDVRAAGGKPYAIPAGASDHPLGGLGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAG 205 (337)
T ss_pred EEEeCCCcchhHHHHHHHHHHHHHhCCCceEEeCCcCCCCCcccHHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHH
Confidence 99998631 233666666666666334344 5555432 22256899999999998 44479999999999999999
Q ss_pred HHHHHhhcCCCcEEEEEecCCCCccCCCCC---CCcccCccCCCC--Cc--cCccccccCeEEEeCHHHHHHHHHHHHHH
Q 023801 144 AGKFLKEKNPNIKLYGIEPTESPVLSGGKP---GPHKIQGIGAGF--VP--GVLEVNIIDEVVQVSSDEAIETAKLLALK 216 (277)
Q Consensus 144 i~~~~~~~~~~~~vigV~~~~~~~~~~~~~---~~~~~~gl~~~~--~~--~~~~~~~~~~~~~v~d~e~~~a~~~l~~~ 216 (277)
++.+|++.+|++|||+|++++++.+...+. ..+.+++++.+. .+ +.+..+++++.|.|+|+|++++++.++++
T Consensus 206 i~~~~k~~~~~~rvigV~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~vsd~e~~~a~~~la~~ 285 (337)
T PRK12390 206 MVVGFAADGRARRVIGIDASAKPEQTRAQVLRIARNTAELVELGRDITEDDVVLDERYAGPEYGLPNEGTLEAIRLCARL 285 (337)
T ss_pred HHHHHHhcCCCceEEEEEecCchHHHHHHHHHHHHHHHHHhCCCCCCChhhEEEecccccCCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999876532211 112223443332 22 23556789999999999999999999999
Q ss_pred cCCeeec-cHHHHHHHHHHHHhcCCC-CCCeEEEEecCCCC
Q 023801 217 EGLFVGI-SSGGAAAAAIEIAKRPEN-AGKLIVVIFPSFGE 255 (277)
Q Consensus 217 ~gi~~~p-~sg~alaa~~~~~~~~~~-~~~~vv~i~~~gG~ 255 (277)
+||++|| |||+++++++++++++.. ++++||++| |||.
T Consensus 286 ~gi~~ep~ysg~~~aa~~~~~~~g~~~~~~~vv~~h-tgg~ 325 (337)
T PRK12390 286 EGMLTDPVYEGKSMHGMIDLVRKGEFPEGSKVLYAH-LGGV 325 (337)
T ss_pred cCccccccHHHHHHHHHHHHHhcCCCCCCCeEEEEe-CCCh
Confidence 9999999 599999999999998764 677899998 8886
No 71
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=6e-42 Score=307.93 Aligned_cols=255 Identities=24% Similarity=0.279 Sum_probs=194.5
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCC-C--HHHHHHHHHcCCEEEEeCC-
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-S--LERRIILRAFGAELVLTDP- 76 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~-~--~~~~~~~~~~Ga~v~~~~~- 76 (277)
|||.+..++..|+++|+ .+.|+++|+||||+|+|++|+++|++|+||||+.. + ..|+.+|+.+||+|+.++.
T Consensus 90 K~r~al~~~l~A~~~Gk----~~vIaetgaGnhG~A~A~~aa~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g 165 (397)
T PRK04346 90 KINNVLGQALLAKRMGK----KRIIAETGAGQHGVATATAAALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSG 165 (397)
T ss_pred HHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHHHHcCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCC
Confidence 79999999999999996 13566689999999999999999999999999853 3 3578899999999999984
Q ss_pred CCChHHHHHHHHH-HHHhCCCeEec-CCCCC----CcchhhhhhchHHHHHhhhC----CCCCEEEEecCCchhHHHHHH
Q 023801 77 AKGMKGAVQKAEE-ILAKTPNAYML-QQFEN----PANPKIHYETTGPELWKGSG----GRIDALVSGIGTGGTITGAGK 146 (277)
Q Consensus 77 ~~~~~~~~~~a~~-~~~~~~~~~~~-~~~~~----~~~~~~g~~t~~~Ei~~Q~~----~~~d~iv~pvG~Gg~~aGi~~ 146 (277)
...+.++...+.+ +.++.++.+|+ .+..+ |.++..||++++.||.+|+. ..||+||+|+|+||+++|++.
T Consensus 166 ~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~ 245 (397)
T PRK04346 166 SRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFH 245 (397)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHHhcchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHH
Confidence 3456666655554 45443344554 32222 34445699999999999984 369999999999999999999
Q ss_pred HHhhcCCCcEEEEEecCCCC--------ccCCCCCC--------------------CcccCccCCCCC-c--cCcccccc
Q 023801 147 FLKEKNPNIKLYGIEPTESP--------VLSGGKPG--------------------PHKIQGIGAGFV-P--GVLEVNII 195 (277)
Q Consensus 147 ~~~~~~~~~~vigV~~~~~~--------~~~~~~~~--------------------~~~~~gl~~~~~-~--~~~~~~~~ 195 (277)
+|++ .+++|||||||.++. ++..+++. .+...||..+.+ | ..+.....
T Consensus 246 ~f~~-~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gL~~pgvgp~~~~l~~~~~ 324 (397)
T PRK04346 246 PFID-DESVRLIGVEAAGKGLETGKHAATLTKGRPGVLHGAKTYLLQDEDGQILETHSISAGLDYPGVGPEHAYLKDIGR 324 (397)
T ss_pred HHhh-CCCCeEEEEecCCCccccccccchhhcCCeeeeccccceecccCCCccCCCceeeccccCCCCCHHHHHHHhcCC
Confidence 9976 789999999999862 22222221 111223322111 1 11234455
Q ss_pred CeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchh
Q 023801 196 DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSV 261 (277)
Q Consensus 196 ~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~ 261 (277)
++++.|+|+|++++++.|++.|||+++++|+.+++++++++++. .++++||+++|++|+||++++
T Consensus 325 ~~~v~VtD~eal~a~~~L~~~eGIi~~~esa~AlA~a~kla~~l-~~~~~Vvv~lsGrG~kd~~~~ 389 (397)
T PRK04346 325 AEYVSITDDEALEAFQLLSRLEGIIPALESSHALAYALKLAPTL-GKDQIIVVNLSGRGDKDVFTV 389 (397)
T ss_pred eEEEEECHHHHHHHHHHHHHHcCCEeccHHHHHHHHHHHhhhhc-CCCCeEEEEeCCCCccCHHHH
Confidence 68999999999999999999999999999999999999887653 367899999977799998854
No 72
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=1.2e-42 Score=309.98 Aligned_cols=250 Identities=19% Similarity=0.217 Sum_probs=199.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEee--CCchHHHHHHHHHHHCCCeEEEEeCCCCC--------HHHHHHHHHcCCE
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEP--TSGNTGIGLAFMAAAKQYRLIITMPASMS--------LERRIILRAFGAE 70 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~a--SsGN~g~a~A~aa~~~Gl~~~vvvp~~~~--------~~~~~~~~~~Ga~ 70 (277)
|||.+..++.+++++|. ++|+++ |+||||+|+|++|+++|++|+||||+..+ ..|+.+++.|||+
T Consensus 50 K~R~~~~~l~~a~~~G~-----~~vvs~ggs~gN~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~ 124 (337)
T TIGR01274 50 KTRKLEYLIPDAQAQGC-----TTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGAD 124 (337)
T ss_pred HHHHHHHHHHHHHHcCC-----CEEEECCCCcchHHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCE
Confidence 79999999999999998 678877 77999999999999999999999998643 5899999999999
Q ss_pred EEEeCCCC--ChHHHHHHHHHHHHhC-CCeEecCCCCC--CcchhhhhhchHHHHHhhh---CCCCCEEEEecCCchhHH
Q 023801 71 LVLTDPAK--GMKGAVQKAEEILAKT-PNAYMLQQFEN--PANPKIHYETTGPELWKGS---GGRIDALVSGIGTGGTIT 142 (277)
Q Consensus 71 v~~~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~~--~~~~~~g~~t~~~Ei~~Q~---~~~~d~iv~pvG~Gg~~a 142 (277)
|+.++... +..+.+..+.+.+++. +..++++.+.+ |.. ..|+.++++||++|+ +..||+||+|+|+|||++
T Consensus 125 v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i~~~~~~~~~~-~~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~a 203 (337)
T TIGR01274 125 VRLDPDGFDIGHRNSWERALEEVRGAGGKPYPIPAGCSDHPLG-GLGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQA 203 (337)
T ss_pred EEEeCCcccccchHHHHHHHHHHHhcCCceEEeCCCCCCCccc-hhHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHH
Confidence 99998521 1234555555555554 23366666543 444 678999999999995 347999999999999999
Q ss_pred HHHHHHhhcCCCcEEEEEecCCCCccCCCC---CCCcccCccCCCC--Cc--cCccccccCeEEEeCHHHHHHHHHHHHH
Q 023801 143 GAGKFLKEKNPNIKLYGIEPTESPVLSGGK---PGPHKIQGIGAGF--VP--GVLEVNIIDEVVQVSSDEAIETAKLLAL 215 (277)
Q Consensus 143 Gi~~~~~~~~~~~~vigV~~~~~~~~~~~~---~~~~~~~gl~~~~--~~--~~~~~~~~~~~~~v~d~e~~~a~~~l~~ 215 (277)
|+++++++.++++|||||++++++.+.... ...+.+++++.+. .+ +.+...++++.|.|+|+|++++++.|++
T Consensus 204 Gl~~~~~~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~ 283 (337)
T TIGR01274 204 GMVAGFAADGRKDRVIGIDASATPEQTRAQILRIARNTAEKIGLERDITEDDVVLDTRFAYPEYGVPNEGTLEAIRLCAK 283 (337)
T ss_pred HHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCCcCccceEEeccccCCCcCCCCHHHHHHHHHHHH
Confidence 999999999999999999999997653211 1122334444321 11 3456778899999999999999999999
Q ss_pred HcCCeeec-cHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCCCC
Q 023801 216 KEGLFVGI-SSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERY 257 (277)
Q Consensus 216 ~~gi~~~p-~sg~alaa~~~~~~~~~-~~~~~vv~i~~~gG~~~ 257 (277)
++|+++|| |||+++++++++++++. .++++||+|| |||...
T Consensus 284 ~eGi~~ep~ytg~~~aa~~~~~~~g~~~~~~~vv~~h-tGG~~~ 326 (337)
T TIGR01274 284 MEGVLTDPVYEGKSMHGMIEMIRRGEFKEGSNVLYAH-LGGAPA 326 (337)
T ss_pred hcCCccCcchHHHHHHHHHHHHhcCCCCCCCEEEEEe-CCChhh
Confidence 99999999 69999999999999876 4678999888 889743
No 73
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=1.3e-42 Score=309.00 Aligned_cols=249 Identities=23% Similarity=0.268 Sum_probs=198.9
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeC--CchHHHHHHHHHHHCCCeEEEEeCCCCCH--------HHHHHHHHcCCE
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPT--SGNTGIGLAFMAAAKQYRLIITMPASMSL--------ERRIILRAFGAE 70 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aS--sGN~g~a~A~aa~~~Gl~~~vvvp~~~~~--------~~~~~~~~~Ga~ 70 (277)
|||.+..++.+++++|. ++||++| +||||+|+|++|+.+|++|+||||+..++ .|+..++.+||+
T Consensus 48 K~R~~~~~l~~a~~~g~-----~~vvt~g~s~gN~g~alA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~ 122 (331)
T PRK03910 48 KTRKLEFLLADALAQGA-----DTLITAGAIQSNHARQTAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAE 122 (331)
T ss_pred HHHHHHHHHHHHHHcCC-----CEEEEcCcchhHHHHHHHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCE
Confidence 79999999999999886 5788874 59999999999999999999999998875 456899999999
Q ss_pred EEEeCCCCChHH-HHHHHHHHHHhCCCeE-ecCCCCCCcchhhhhhchHHHHHhhhCC---CCCEEEEecCCchhHHHHH
Q 023801 71 LVLTDPAKGMKG-AVQKAEEILAKTPNAY-MLQQFENPANPKIHYETTGPELWKGSGG---RIDALVSGIGTGGTITGAG 145 (277)
Q Consensus 71 v~~~~~~~~~~~-~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~---~~d~iv~pvG~Gg~~aGi~ 145 (277)
|+.+++..+..+ +...++++.++.+..+ +..++.|+.+ ..||.+++.||++|++. .||+||+|+|||||++|++
T Consensus 123 vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~-~~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~ 201 (331)
T PRK03910 123 IHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGGSNALG-ALGYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLA 201 (331)
T ss_pred EEEeCccchHHHHHHHHHHHHHHcCCceEEECCCCCCchh-HHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHH
Confidence 999986423323 3445666666543333 4456778887 67889999999999953 6999999999999999999
Q ss_pred HHHhhcCCCcEEEEEecCCCCccCCCCC---CCcccCccCCC--C--CccCccccccCeEEEeCHHHHHHHHHHHHHHcC
Q 023801 146 KFLKEKNPNIKLYGIEPTESPVLSGGKP---GPHKIQGIGAG--F--VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEG 218 (277)
Q Consensus 146 ~~~~~~~~~~~vigV~~~~~~~~~~~~~---~~~~~~gl~~~--~--~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~g 218 (277)
++|++.+|+++||||||++++.+....+ .....++++.+ . ..+.+..+++|+.+.|+|+|+++++++|++++|
T Consensus 202 ~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~g 281 (331)
T PRK03910 202 AGLAALGPDIPVIGVTVSRSAAEQEPKVAKLAQATAELLGLPTEIPRADIRLWDDYVGPGYGVPTDEMLEAVKLLARTEG 281 (331)
T ss_pred HHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHcCCCccCCcccEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999998764421111 01122333322 1 122356778999999999999999999999999
Q ss_pred Ceeec-cHHHHHHHHHHHHhcCCC-CCCeEEEEecCCCCC
Q 023801 219 LFVGI-SSGGAAAAAIEIAKRPEN-AGKLIVVIFPSFGER 256 (277)
Q Consensus 219 i~~~p-~sg~alaa~~~~~~~~~~-~~~~vv~i~~~gG~~ 256 (277)
|++|| |||+++++++++.+++.. ++++||+|+ |||+.
T Consensus 282 i~~ep~ysg~~~aa~~~~~~~~~~~~~~~Vv~i~-tGG~~ 320 (331)
T PRK03910 282 ILLDPVYTGKAMAGLIDLIRQGRFKKGGNVLFIH-TGGAP 320 (331)
T ss_pred CccccccHHHHHHHHHHHHHcCCCCCCCeEEEEE-CCChH
Confidence 99999 599999999998877654 578999998 99984
No 74
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=3.4e-41 Score=303.55 Aligned_cols=255 Identities=20% Similarity=0.252 Sum_probs=195.3
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCC---CHHHHHHHHHcCCEEEEeCC-
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---SLERRIILRAFGAELVLTDP- 76 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~---~~~~~~~~~~~Ga~v~~~~~- 76 (277)
|||.+..++..|+++|+ + +.|+++|+||||+|+|++|+++|++|+||||+.. +..|+.+|+.|||+|+.++.
T Consensus 103 K~R~a~~~~l~A~~~g~---~-~vIaesgaGNhG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g 178 (410)
T PLN02618 103 KINNAVAQALLAKRLGK---K-RIIAETGAGQHGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSG 178 (410)
T ss_pred HHHHHHHHHHHHHHcCC---C-EEEEEcCcHHHHHHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCC
Confidence 79999999999998886 1 3344567999999999999999999999999863 35678899999999999953
Q ss_pred CCChHHHHH-HHHHHHHhCCCeEec-CCCC--C--CcchhhhhhchHHHHHhhh----CCCCCEEEEecCCchhHHHHHH
Q 023801 77 AKGMKGAVQ-KAEEILAKTPNAYML-QQFE--N--PANPKIHYETTGPELWKGS----GGRIDALVSGIGTGGTITGAGK 146 (277)
Q Consensus 77 ~~~~~~~~~-~a~~~~~~~~~~~~~-~~~~--~--~~~~~~g~~t~~~Ei~~Q~----~~~~d~iv~pvG~Gg~~aGi~~ 146 (277)
...+.++.. ..++++++.++.+|+ .+.. + |.....+++++|.||.+|+ +..||+||+|||+||+++|++.
T Consensus 179 ~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~ 258 (410)
T PLN02618 179 TATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFH 258 (410)
T ss_pred CCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCCCHHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHH
Confidence 346777764 445566653344555 2221 2 2334689999999998776 3469999999999999999999
Q ss_pred HHhhcCCCcEEEEEecCCCC--------ccCCCCCC--------------------CcccCccCCCCC-cc--Ccccccc
Q 023801 147 FLKEKNPNIKLYGIEPTESP--------VLSGGKPG--------------------PHKIQGIGAGFV-PG--VLEVNII 195 (277)
Q Consensus 147 ~~~~~~~~~~vigV~~~~~~--------~~~~~~~~--------------------~~~~~gl~~~~~-~~--~~~~~~~ 195 (277)
+|+. .+++|||||||.++. ++..++++ .+...||..+.. |. .+.....
T Consensus 259 ~f~~-~~~v~ligVEa~G~~~~~~~~~a~l~~g~~gv~~g~~~~~l~~~~g~~~~~~sia~gl~~pgvgp~~~~l~~~~~ 337 (410)
T PLN02618 259 EFID-DEDVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDTGR 337 (410)
T ss_pred HHHh-CCCceEEEEEeCCCcccccccccchhcCCcceeccccccccccccCCCCCCcchhhhhcCCCCcHHHHHHHhhcC
Confidence 9975 689999999999872 22223221 111223322111 11 1223357
Q ss_pred CeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchh
Q 023801 196 DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSV 261 (277)
Q Consensus 196 ~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~ 261 (277)
++.+.|+|+|++++++.|+++|||+++++|+.+++++++++++. .++++||+++++.|+||++++
T Consensus 338 ~~~v~VtD~Eal~a~~~La~~eGIi~~~sSa~a~a~a~~~a~~l-~~~~~iVv~lsgrG~Kd~~~v 402 (410)
T PLN02618 338 AEYYSVTDEEALEAFQRLSRLEGIIPALETSHALAYLEKLCPTL-PDGTKVVVNCSGRGDKDVNTA 402 (410)
T ss_pred cEEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHHHhHhc-CCCCEEEEEeCCCCcCCHHHH
Confidence 79999999999999999999999999999999999999998763 368899999999999999975
No 75
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=4.3e-41 Score=318.31 Aligned_cols=255 Identities=20% Similarity=0.237 Sum_probs=198.5
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCC---CCHHHHHHHHHcCCEEEEeCC-
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS---MSLERRIILRAFGAELVLTDP- 76 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~---~~~~~~~~~~~~Ga~v~~~~~- 76 (277)
|||++..++..++++|+. +.|+++|+||||+|+|++|+++|++|+||||+. .+..|+.+|+.|||+|+.++.
T Consensus 363 KdR~Al~~i~~A~~~G~~----~~IvetssGNhG~AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g 438 (695)
T PRK13802 363 KINNALGQALLVKRMGKT----RVIAETGAGQHGVATATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLG 438 (695)
T ss_pred HHHHHHHHHHHHHHcCCC----CEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCC
Confidence 799999999999999972 468899999999999999999999999999985 367899999999999999984
Q ss_pred CCChHHHHHHH-HHHHHhCC-CeEecCCCCCC----cchhhhhhchHHHHHhhhCC-----CCCEEEEecCCchhHHHHH
Q 023801 77 AKGMKGAVQKA-EEILAKTP-NAYMLQQFENP----ANPKIHYETTGPELWKGSGG-----RIDALVSGIGTGGTITGAG 145 (277)
Q Consensus 77 ~~~~~~~~~~a-~~~~~~~~-~~~~~~~~~~~----~~~~~g~~t~~~Ei~~Q~~~-----~~d~iv~pvG~Gg~~aGi~ 145 (277)
...+.++.+.+ +++.++.+ .+|+++++.|| .++.+||+++|.||++|+.+ .||+||+|||+||+++|++
T Consensus 439 ~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~ 518 (695)
T PRK13802 439 DRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFPAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVM 518 (695)
T ss_pred CCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHH
Confidence 23567775544 55665533 45677777654 34568999999999999952 6999999999999999999
Q ss_pred HHHhhcCCCcEEEEEecCCCCccCCCCCCCcccC-------------------------------ccCCCCC-ccCcccc
Q 023801 146 KFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQ-------------------------------GIGAGFV-PGVLEVN 193 (277)
Q Consensus 146 ~~~~~~~~~~~vigV~~~~~~~~~~~~~~~~~~~-------------------------------gl~~~~~-~~~~~~~ 193 (277)
.+|++ .+.+|||||||.++....+.+. .+..+ ||.-.-+ |..-...
T Consensus 519 ~~f~~-~~~vkligVE~~g~g~~~g~h~-~~~~~g~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gLdy~gvgp~~~~l~ 596 (695)
T PRK13802 519 NAFLD-DERVNLYGYEAGGNGPESGKHA-IRFAPGTGELGMFQGAKSYLLENDEGQTLDTYSISAGLDYASVGPEHAWLK 596 (695)
T ss_pred HHHHh-CCCceEEEEEecCCCccccchh-hhhhhccCCccccccceeecccCCCCCccCccccccccCCCCCCchhHHHH
Confidence 99976 6889999999999743221100 00001 1110000 1000112
Q ss_pred ccCe--EEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCC---CCCeEEEEecCCCCCCcchh
Q 023801 194 IIDE--VVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN---AGKLIVVIFPSFGERYLSSV 261 (277)
Q Consensus 194 ~~~~--~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~---~~~~vv~i~~~gG~~~~~~~ 261 (277)
..+. .+.|+|+|++++.+.|+++|||+++|+|+.+++++++++++... .+++||+++++.|+||++++
T Consensus 597 ~~~rv~~~~vtD~eal~a~~~La~~EGIipa~eS~hAva~a~~~a~~~~~~~~~~~~Vv~~lsg~GdKdl~~~ 669 (695)
T PRK13802 597 DIGRVNYSWATDEEAMNAFKDLCETEGIIPAIESSHAVAGAYKAAADLKAKGYEHPVMIVNISGRGDKDMNTA 669 (695)
T ss_pred hcCCeEEEEECHHHHHHHHHHHHHHcCccccchHHHHHHHHHHHHHhcccccCCCCEEEEEECCCCcCCHHHH
Confidence 2344 48999999999999999999999999999999999999876532 25699999999999999974
No 76
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=2.9e-41 Score=297.81 Aligned_cols=239 Identities=37% Similarity=0.559 Sum_probs=194.1
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.+++.+++++|. ++|+++|+||||+|+|++|+.+|++|++|+|+++++.|+++++.+||+|+.++. ++
T Consensus 40 K~R~a~~~l~~a~~~~~-----~~vv~assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~--~~ 112 (306)
T PF00291_consen 40 KDRGAYYLLSRAKEKGG-----RTVVGASSGNHGRALAYAAARLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPG--DV 112 (306)
T ss_dssp HHHHHHHHHHHHHHTTT-----SEEEEESSSHHHHHHHHHHHHHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESS--TH
T ss_pred ccccchhhhhhcccccc-----ceeeeeccCCceehhhhhhhhccccceeeeccccccccccceeeecceEEEccc--cc
Confidence 79999999999999866 679999999999999999999999999999999999999999999999999985 33
Q ss_pred HHHHHHHHHHHH-------hCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCE--EEEecCCchhHHHHHHHHhh-
Q 023801 81 KGAVQKAEEILA-------KTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDA--LVSGIGTGGTITGAGKFLKE- 150 (277)
Q Consensus 81 ~~~~~~a~~~~~-------~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~--iv~pvG~Gg~~aGi~~~~~~- 150 (277)
++..+.+.++++ ..++. ++|+ ++.+.+.||.++++||++|+. .||. ||+|+|+||+++|++.+++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~g~~~~~~Ei~~q~~-~~d~d~vvv~~GtGg~~~Gi~~~~~~~ 188 (306)
T PF00291_consen 113 EGAFDDAQELAKERAELLSPFNGE--LNQY-NNPNVIAGYATIGLEIYEQLG-KPDPDYVVVPVGTGGTAAGIAAGLKEL 188 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTE--ESTT-TSHHHHHHHHHHHHHHHHHHT-TESESEEEEEESSSHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccc--cCcc-cchhhhhhhhhcchhcccccc-cccceEEEecCCchhHHHHHHhhhhhh
Confidence 433333333332 22222 6777 455558999999999999996 7766 99999999999999999999
Q ss_pred -cCCCcEEEEEecCCCCccC----CCCC----CCcccCccCCCC-Ccc----CccccccCeEEEeCHHHHHHHHHHHHHH
Q 023801 151 -KNPNIKLYGIEPTESPVLS----GGKP----GPHKIQGIGAGF-VPG----VLEVNIIDEVVQVSSDEAIETAKLLALK 216 (277)
Q Consensus 151 -~~~~~~vigV~~~~~~~~~----~~~~----~~~~~~gl~~~~-~~~----~~~~~~~~~~~~v~d~e~~~a~~~l~~~ 216 (277)
. |+++|++|++.+++++. .+.. ..+.++|++.+. .+. .+.++++++++.|+|+|++++++.|+++
T Consensus 189 ~~-~~~~vigv~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~ 267 (306)
T PF00291_consen 189 IL-PPVRVIGVEPEGSDPLYRSFKAGKPIRLPGESTIAGLGVPMPFPGELDLELIDEYVGDVVGVSDEEALEAIRELAER 267 (306)
T ss_dssp CH-TTSEEEEEEETTGHHHHHHHHHTSCEHSSCHHSSTGGTSSSCTTTTHHHHHHHHETEEEEEEEHHHHHHHHHHHHHH
T ss_pred hc-ccccceeeeccCCccccccccccccccccceeeeecccCCccchhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 7 89999999999886653 2332 113455777654 222 2445667788999999999999999999
Q ss_pred cCCeeeccHHHHHHHHHHHHhcCCC---CCCeEEEEec
Q 023801 217 EGLFVGISSGGAAAAAIEIAKRPEN---AGKLIVVIFP 251 (277)
Q Consensus 217 ~gi~~~p~sg~alaa~~~~~~~~~~---~~~~vv~i~~ 251 (277)
+|+++||++++++++++++.+++.. ++++||+|+|
T Consensus 268 ~gi~~~p~~a~a~aa~~~~~~~~~~~~~~~~~vv~v~t 305 (306)
T PF00291_consen 268 EGILVEPSSAAALAAALKLAERGSLAPPAGKRVVVVLT 305 (306)
T ss_dssp HSB-B-HHHHHHHHHHHHHHHHTGCHTTTTSEEEEEE-
T ss_pred cCcEEcHHHHHHHHHHHHHHHhCCccccCCCeEEEEcC
Confidence 9999999999999999999887642 7899999983
No 77
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=4.6e-40 Score=292.24 Aligned_cols=246 Identities=21% Similarity=0.259 Sum_probs=187.2
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEE--eeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHH-HHHHHHHcCCEEEEeCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLI--EPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE-RRIILRAFGAELVLTDPA 77 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv--~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~-~~~~~~~~Ga~v~~~~~~ 77 (277)
|||.+.+++.+++++|. ++|+ ++|+||||+|+|++|+++|++|++|||...+.. +..+++.+||+++.++..
T Consensus 54 K~R~~~~~l~~a~~~G~-----~~vv~~~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~ 128 (329)
T PRK14045 54 KIRKLEYLLGDALSRGA-----DVVITVGAVHSNHAFVTGLAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAK 128 (329)
T ss_pred hHHHHHhHHHHHHHcCC-----CEEEEeCccHHHHHHHHHHHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCC
Confidence 89999999999999987 5576 589999999999999999999999999875433 666789999999988742
Q ss_pred CC---hHHHHHHHHHHHHhCCCeEec-CCCCCCcchhhhhhchHHHHHhhhC---CCCCEEEEecCCchhHHHHHHHHhh
Q 023801 78 KG---MKGAVQKAEEILAKTPNAYML-QQFENPANPKIHYETTGPELWKGSG---GRIDALVSGIGTGGTITGAGKFLKE 150 (277)
Q Consensus 78 ~~---~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~g~~t~~~Ei~~Q~~---~~~d~iv~pvG~Gg~~aGi~~~~~~ 150 (277)
.+ ++.+.+.++++.++.+..+++ +++.||.+ ..||.+...||++|+. .++|+||+|+|||||++|++++++.
T Consensus 129 ~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~-~~g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~ 207 (329)
T PRK14045 129 DSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVG-TLGYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAI 207 (329)
T ss_pred cccchHHHHHHHHHHHHhcCCCEEEECCCCCchhH-HHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHH
Confidence 22 234556666666665445554 55568877 5566555569999995 3699999999999999999999999
Q ss_pred cCCCcEEEEEecCCCCccCCCCC-----CCcccCccCCCC-CccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeec-
Q 023801 151 KNPNIKLYGIEPTESPVLSGGKP-----GPHKIQGIGAGF-VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGI- 223 (277)
Q Consensus 151 ~~~~~~vigV~~~~~~~~~~~~~-----~~~~~~gl~~~~-~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p- 223 (277)
.+|++|||+|++.+......++. ....+.+++.+. .+. +.+.+.+++..++ +|++++++.|+++|||++||
T Consensus 208 ~~~~~kVigv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~d~~~~~y~~~~-~e~~~~~~~la~~eGi~ldpv 285 (329)
T PRK14045 208 LNAEWRVVGIAVGSFGEKMKEKVKNLVKKTKELLGVKVKVQEPE-LYDYSFGEYGKIT-KEVAKLIRSVGTMEGLILDPV 285 (329)
T ss_pred hCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCCccceE-ecccccCCCCCCC-HHHHHHHHHHHHhhCCCCccc
Confidence 99999999999976321111100 011233444332 222 2233446655555 79999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCC
Q 023801 224 SSGGAAAAAIEIAKRPENAGKLIVVIFPSFGER 256 (277)
Q Consensus 224 ~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~ 256 (277)
|||+++++++++++++.. +++||+|| |||..
T Consensus 286 ytgk~~~a~~~~~~~~~~-~~~iv~ih-tGG~~ 316 (329)
T PRK14045 286 YTGKAFYGLMDLAKKGEL-GEKILFIH-TGGIS 316 (329)
T ss_pred hHHHHHHHHHHHHHcCCC-CCCEEEEE-CCCcc
Confidence 999999999999988643 67899999 88863
No 78
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=4.1e-39 Score=305.29 Aligned_cols=255 Identities=21% Similarity=0.231 Sum_probs=194.0
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCC---CHHHHHHHHHcCCEEEEeCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---SLERRIILRAFGAELVLTDPA 77 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~---~~~~~~~~~~~Ga~v~~~~~~ 77 (277)
|||.+..++..++++|+ + +.|+++|+||||+|+|++|+++|++|+||||... +..|+.+|+.+||+|+.++..
T Consensus 302 K~r~al~~~~~a~~~g~---~-~vi~e~gsGnhG~A~A~~aa~~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~ 377 (610)
T PRK13803 302 KINNALGQALLAKRMGK---T-RIIAETGAGQHGVATATACALFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSG 377 (610)
T ss_pred HHHHHHHHHHHHHHcCC---C-EEEEecChHHHHHHHHHHHHHcCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECCC
Confidence 79999999999999885 1 3455789999999999999999999999999864 356889999999999999842
Q ss_pred -CChHHHHHHHHH-HHHhCCCeEecCCCC---C--CcchhhhhhchHHHHHhhhC----CCCCEEEEecCCchhHHHHHH
Q 023801 78 -KGMKGAVQKAEE-ILAKTPNAYMLQQFE---N--PANPKIHYETTGPELWKGSG----GRIDALVSGIGTGGTITGAGK 146 (277)
Q Consensus 78 -~~~~~~~~~a~~-~~~~~~~~~~~~~~~---~--~~~~~~g~~t~~~Ei~~Q~~----~~~d~iv~pvG~Gg~~aGi~~ 146 (277)
..+.++...+.+ +..+.++.+|+.++. + |.++..||++++.||++|+. ..||+||+|+|+||+++|++.
T Consensus 378 ~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~~~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~ 457 (610)
T PRK13803 378 SKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQSVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFY 457 (610)
T ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHHhhHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHH
Confidence 356666544444 434444566664432 2 33434589999999999984 259999999999999999999
Q ss_pred HHhhcCCCcEEEEEecCCCC--------ccCCCCCC--------------------CcccCccCCCCC-cc--Ccccccc
Q 023801 147 FLKEKNPNIKLYGIEPTESP--------VLSGGKPG--------------------PHKIQGIGAGFV-PG--VLEVNII 195 (277)
Q Consensus 147 ~~~~~~~~~~vigV~~~~~~--------~~~~~~~~--------------------~~~~~gl~~~~~-~~--~~~~~~~ 195 (277)
+|++ .++++||||||.++. ++..++++ .+...|+..+.+ |. .+.....
T Consensus 458 ~f~~-~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~~~~sia~gl~~~gvg~~~~~~~~~~~ 536 (610)
T PRK13803 458 HFLD-DPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHGSMTYLMQDENGQILEPHSISAGLDYPGIGPMHANLFETGR 536 (610)
T ss_pred HHhh-CCCceEEEEecCCCCcccccccchhhcCCeeeeccceeeeecccCCcccCCceeeccCCCCCCCHHHHHHHhcCC
Confidence 9964 789999999999862 23223221 112233332211 11 1223334
Q ss_pred CeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchh
Q 023801 196 DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSV 261 (277)
Q Consensus 196 ~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~ 261 (277)
++.+.|+|+|++++++.|++.|||+++++||++++++++++.+. .++++||+++|++|+||++++
T Consensus 537 ~~~v~Vtd~ea~~a~~~La~~eGi~~~~ssa~alA~~~~~~~~~-~~~~~Vvv~lsG~G~kd~~~~ 601 (610)
T PRK13803 537 AIYTSVTDEEALDAFKLLAKLEGIIPALESSHALAYLKEGRKKF-KKKDIVIVNLSGRGDKDIPTL 601 (610)
T ss_pred eEEEEECHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHHhchhc-CCCCeEEEEeCCCCcCCHHHH
Confidence 57999999999999999999999999999999999999876543 357899999978899998853
No 79
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=7.4e-37 Score=273.86 Aligned_cols=250 Identities=22% Similarity=0.251 Sum_probs=211.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKG 79 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~ 79 (277)
|||+...++..+.+.|. .+|+++||||+|.|+|+++.+.|++|.|++|.+ .+..|+.+|..+|++++.+++ +
T Consensus 110 KDrg~~~~~~~~~~~g~-----~~I~~ASSGnTgAs~aaya~rag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~G--~ 182 (411)
T COG0498 110 KDRGMTVLVSLAKELGA-----KTILCASSGNTGASAAAYAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDG--N 182 (411)
T ss_pred hhhhHHHHHHHHHHhcC-----CEEEEeCCchHHHHHHHHhccCCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEcC--c
Confidence 89999999999999995 369999999999999999999999999999998 999999999999999999996 7
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhC-CCCCEEEEecCCchhHHHHHHHHhhcCC-----
Q 023801 80 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSG-GRIDALVSGIGTGGTITGAGKFLKEKNP----- 153 (277)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~-~~~d~iv~pvG~Gg~~aGi~~~~~~~~~----- 153 (277)
|+++.+.+++++++. ++++....-||.. ++||+|+++||++|++ ..||+|++|+|+||++.|+++++++..+
T Consensus 183 fDda~~~vk~~~~~~-~~~~~~nsiNp~r-legq~t~~fe~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~ 260 (411)
T COG0498 183 FDDAQELVKEAANRE-GLLSAVNSINPYR-LEGQKTYAFEIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKID 260 (411)
T ss_pred HHHHHHHHHHHHhhC-CceeeccccCHHH-hhhhhhhHhHHHHHhCCCCCCeEEEeCCchHHHHHHHHHHHhcccccchh
Confidence 899999999999876 5577777788888 8999999999999997 4799999999999999999999999765
Q ss_pred -CcEEEEEecCCCCccCCC-CC---C-CcccCccCCCCCccCcc------ccccCeEEEeCHHHHHHHHHHHHHHcCCee
Q 023801 154 -NIKLYGIEPTESPVLSGG-KP---G-PHKIQGIGAGFVPGVLE------VNIIDEVVQVSSDEAIETAKLLALKEGLFV 221 (277)
Q Consensus 154 -~~~vigV~~~~~~~~~~~-~~---~-~~~~~gl~~~~~~~~~~------~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~ 221 (277)
.++..+|+++++.++... +. . .+....|..+ .|.++. .+.....+.|+|+|++++++.+++++|+++
T Consensus 261 ~~p~~~~vqaeg~~p~~~~~~~~~~~~~T~a~am~I~-~p~n~~r~l~a~~es~g~~~~vsdeEi~~a~~~l~~~eG~~~ 339 (411)
T COG0498 261 KAPNMNGVQAEGFSPGVYAWKEGRETPETIAPAMDIG-NPSNWERALFALRESGGLAVAVSDEEILEAIKLLAEREGILI 339 (411)
T ss_pred cCchhhhhhHhhccchhhhcccccccccccccccccC-CCCCHHHHHHHHHhcCCceEEeCHHHHHHHHHHHHHhCCccc
Confidence 478899999998765432 11 1 1223333322 132221 222355999999999999999999999999
Q ss_pred eccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcch
Q 023801 222 GISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 260 (277)
Q Consensus 222 ~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 260 (277)
||+||+++++++++.++...++.++|++.|.+|.|+.++
T Consensus 340 eP~sA~ava~l~k~~~~~i~~~~~vV~v~Tg~~~K~~~~ 378 (411)
T COG0498 340 EPHSAVAVAALLKLREKIIDPDETVVLVLTGHGLKFPDT 378 (411)
T ss_pred CccHHHHHHHHHHHHHhhcCCCCeEEEEecCCcccChhH
Confidence 999999999999998872246789999998889999886
No 80
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=99.97 E-value=2.2e-29 Score=212.25 Aligned_cols=249 Identities=20% Similarity=0.241 Sum_probs=190.7
Q ss_pred hhHHHHHHHHHHcCCCCCCCcEEEeeCC--chHHHHHHHHHHHCCCeEEEEeCCCC----CHHHHHHHHHcCCEEEEeCC
Q 023801 3 RIGYSMISDAEAKGLITPGESVLIEPTS--GNTGIGLAFMAAAKQYRLIITMPASM----SLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 3 R~a~~~v~~a~~~g~l~~g~~~vv~aSs--GN~g~a~A~aa~~~Gl~~~vvvp~~~----~~~~~~~~~~~Ga~v~~~~~ 76 (277)
|=-.+.+.+|+++|. +++|++.+ .||.+++|++|+++|++|++++.... -..++...+.+|+++..++.
T Consensus 50 RKLefll~eal~~g~-----dTlvT~GgiQSNh~r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~ 124 (323)
T COG2515 50 RKLEFLLGEALRKGA-----DTLVTYGGIQSNHVRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDA 124 (323)
T ss_pred HHHHHHHhhhhhcCC-----cEEEEecccchhHHHHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecC
Confidence 444566677777776 88999866 99999999999999999999997764 23467888899999999997
Q ss_pred CCCh--HHHHHHHHHHHHhCCCeEec-CCCC-CCcchhhhhhchHHHHHhhhC--CCCCEEEEecCCchhHHHHHHHHhh
Q 023801 77 AKGM--KGAVQKAEEILAKTPNAYML-QQFE-NPANPKIHYETTGPELWKGSG--GRIDALVSGIGTGGTITGAGKFLKE 150 (277)
Q Consensus 77 ~~~~--~~~~~~a~~~~~~~~~~~~~-~~~~-~~~~~~~g~~t~~~Ei~~Q~~--~~~d~iv~pvG~Gg~~aGi~~~~~~ 150 (277)
..++ +...+..++..++.++..|+ +... ||.. ..||..++.||.+|.. .++|.||+++|||||.||+..++..
T Consensus 125 ~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG~~~~g-~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~ 203 (323)
T COG2515 125 GTDIGINASAEELAEEVRKQGGKPYVIPEGGSSPLG-ALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQ 203 (323)
T ss_pred CCChhhchhhHHHHHHHHhcCCCCcEeccCCcCccc-cccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhh
Confidence 5555 33344444444544454444 4333 4444 6799999999999986 5799999999999999999999999
Q ss_pred cCCCcEEEEEecCCCCccCCCCC---CCcccCccCCC-CCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeec-cH
Q 023801 151 KNPNIKLYGIEPTESPVLSGGKP---GPHKIQGIGAG-FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGI-SS 225 (277)
Q Consensus 151 ~~~~~~vigV~~~~~~~~~~~~~---~~~~~~gl~~~-~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p-~s 225 (277)
.+++.+|||+.....+.....+. ..+.++-++.. ...+.+..+|....|+++.+|.+++++.+++.|||++|| |+
T Consensus 204 ~~~~~~ViG~~v~~~~~~~~~qv~~L~~~~a~~~~~~~~~~v~~~~dy~~~~Yg~p~~e~~e~i~~~~~~eGillDpVYt 283 (323)
T COG2515 204 LGPDVEVIGIDVSADPEKLKEQVLNLAQATAELLGLGSEADVLLSDDYHHPGYGKPNEEDIEAIKLLARLEGILLDPVYT 283 (323)
T ss_pred ccCCCceEEEeecCCHHHHHHHHHHHHHHHHHHcCCCCCceEEEEecccCCccCCcCHHHHHHHHHHHHhhCcccccccc
Confidence 99999999999888754321111 11112222222 223456678888899999999999999999999999999 99
Q ss_pred HHHHHHHHHHHhcCCCC-CCeEEEEecCCCCCCc
Q 023801 226 GGAAAAAIEIAKRPENA-GKLIVVIFPSFGERYL 258 (277)
Q Consensus 226 g~alaa~~~~~~~~~~~-~~~vv~i~~~gG~~~~ 258 (277)
|+++.+++++++++.++ +.+|++|| +||..-+
T Consensus 284 gKam~Glid~~~k~~f~~~~~vLfiH-tGG~~gl 316 (323)
T COG2515 284 GKAMYGLIDLARKGEFPDGSPVLFIH-TGGAPGL 316 (323)
T ss_pred hHHHHHHHHHHhcccCCCCCceEEEE-cCCccch
Confidence 99999999999998854 55578887 8887443
No 81
>PRK09225 threonine synthase; Validated
Probab=99.97 E-value=2.6e-28 Score=223.48 Aligned_cols=245 Identities=16% Similarity=0.105 Sum_probs=186.4
Q ss_pred CChhHHH---HHHHHHHcCCCCCCCcEEEeeCCchHHHHH-HHHHHHCCCeEEEEeCCC-CCHHHHHHHHHc-CCEE--E
Q 023801 1 MCRIGYS---MISDAEAKGLITPGESVLIEPTSGNTGIGL-AFMAAAKQYRLIITMPAS-MSLERRIILRAF-GAEL--V 72 (277)
Q Consensus 1 ~dR~a~~---~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~-A~aa~~~Gl~~~vvvp~~-~~~~~~~~~~~~-Ga~v--~ 72 (277)
|||++.. ++.++++ +. ..+|+++||||+|.|+ |.++.+.|++|+|++|++ +++.+..+|..+ |++| +
T Consensus 112 KD~a~~~l~~~l~~a~~-~~----~~~Il~ATSGdtG~Aa~aaf~~~~gi~~~V~~P~g~vs~~q~~Qm~t~~g~nv~vi 186 (462)
T PRK09225 112 KDFALQFLAQLLEYVLK-GE----KITILGATSGDTGSAAAEAFRGKPNVRVVILYPKGKVSPVQEKQMTTLQGDNIHVV 186 (462)
T ss_pred hhhHHHHHHHHHHHHHh-CC----CcEEEEcCCCcHHHHHHHHHhCcCCCEEEEEEcCCCCCHHHHHHHHhhcCCCeEEE
Confidence 8999988 8899987 42 2679999999999999 799999999999999996 899999999999 9987 5
Q ss_pred EeCCCCChHHHHHHHHHHHHh------CCCeEecCCCCCCcchhhhhhchHHHHHhhhCC---CCCEEEEecCCchhHHH
Q 023801 73 LTDPAKGMKGAVQKAEEILAK------TPNAYMLQQFENPANPKIHYETTGPELWKGSGG---RIDALVSGIGTGGTITG 143 (277)
Q Consensus 73 ~~~~~~~~~~~~~~a~~~~~~------~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~---~~d~iv~pvG~Gg~~aG 143 (277)
.+++ +|+++.+.++++..+ . +++-.+.. ||.. +.||.++++|+++|+.. .||+|++|+|+||.+.|
T Consensus 187 ~V~G--~fDD~q~~vk~~~~d~~~~~~~-~l~saNSi-N~~R-i~gQ~~yyfea~~ql~~~~~~p~~~vVPtGnfgni~a 261 (462)
T PRK09225 187 AVEG--NFDDCQALVKAAFNDEELKEKL-KLSSANSI-NIGR-LLAQIVYYFYAYLQLGIEAGEKVNFSVPSGNFGNILA 261 (462)
T ss_pred EeCC--CHHHHHHHHHHHhhchhhhhcC-ceEEEecc-CHHH-HHHHHHHHHHHHHHhccccCCCCEEEEECCcHHHHHH
Confidence 5664 789998888776543 3 45555553 7777 88999999999999953 39999999999999999
Q ss_pred HHHHHhhcCCCcEEEEEecCCCCccC----CCCCC-----CcccCccCCCCCccCccc---------------------c
Q 023801 144 AGKFLKEKNPNIKLYGIEPTESPVLS----GGKPG-----PHKIQGIGAGFVPGVLEV---------------------N 193 (277)
Q Consensus 144 i~~~~~~~~~~~~vigV~~~~~~~~~----~~~~~-----~~~~~gl~~~~~~~~~~~---------------------~ 193 (277)
.+.+.+.-.|-+|+|+++ ..++.+. .+... .+...++... .|.++.+ .
T Consensus 262 ~~~Ak~mGlpi~kli~A~-n~n~~l~~~~~~G~y~~~~~~~T~s~amdI~-~psn~eR~l~~~~~~~~~~v~~~m~~l~~ 339 (462)
T PRK09225 262 GYYAKKMGLPIKRLIVAT-NENDVLTRFLKTGVYDPRPTVATLSPAMDIS-VSSNFERLLFDLLGRDAAAVEELMEDLEE 339 (462)
T ss_pred HHHHHHcCCCcceEEEEe-cCChHHHHHHHcCCCccCCCCCCcCchhhcC-CCCcHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999844334667999997 4443331 22211 1222233221 1221111 0
Q ss_pred ccC---------------eEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCc
Q 023801 194 IID---------------EVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYL 258 (277)
Q Consensus 194 ~~~---------------~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~ 258 (277)
.-. ..+.|+|+|++++++.+++++|+++||.||++++++.++.+ ++.++|++.|..|.|+.
T Consensus 340 ~gg~~~~~~~~~~~~~~f~a~~vsD~ei~~ai~~~~~~~G~~~dPhtAva~aa~~~~~~----~~~~~V~l~Ta~p~Kf~ 415 (462)
T PRK09225 340 KGEYDLSDEELAALREDFSAGSVSDEETLATIREVYEEYGYLIDPHTAVAYKAAREYLD----PGEPGVVLSTAHPAKFP 415 (462)
T ss_pred cCCcccCHHHHHHhhhcceEEEECHHHHHHHHHHHHHhCCEEECchHHHHHHHHHHhhC----CCCCEEEEecCCccCCH
Confidence 011 56999999999999999999999999999999999987632 45678999989999987
Q ss_pred chh
Q 023801 259 SSV 261 (277)
Q Consensus 259 ~~~ 261 (277)
+.+
T Consensus 416 ~~v 418 (462)
T PRK09225 416 EVV 418 (462)
T ss_pred HHH
Confidence 743
No 82
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.96 E-value=2.4e-27 Score=217.21 Aligned_cols=248 Identities=14% Similarity=0.056 Sum_probs=186.1
Q ss_pred CChhHHHH---HHHHHHcCCCCCCCcEEEeeCCchHHHH-HHHHHHHCCCeEEEEeCCC-CCHHHHHHHHHcCC---EEE
Q 023801 1 MCRIGYSM---ISDAEAKGLITPGESVLIEPTSGNTGIG-LAFMAAAKQYRLIITMPAS-MSLERRIILRAFGA---ELV 72 (277)
Q Consensus 1 ~dR~a~~~---v~~a~~~g~l~~g~~~vv~aSsGN~g~a-~A~aa~~~Gl~~~vvvp~~-~~~~~~~~~~~~Ga---~v~ 72 (277)
|||++..+ |.+++++.. +..+|+++||||+|.| ++.++.+.|++|+|++|++ +++.+..+|..+|+ +++
T Consensus 111 KD~a~~~l~~l~~~~~~~~~---~~~~Il~ATSGdTG~Aa~aaf~~~~gi~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi 187 (460)
T cd01560 111 KDMALQFLGRLLEYFLKRRN---ERITILVATSGDTGSAAIEGFRGKPNVDVVVLYPKGGVSPIQELQMTTLPADNVHVV 187 (460)
T ss_pred HHhHHHHHHHHHHHHHHhcC---CCeEEEEcCCCcHHHHHHHHHhCcCCCEEEEEEcCCCCCHHHHHHHHhhCCCceEEE
Confidence 79998866 777876521 2267999999999999 5899999999999999996 99999999999997 788
Q ss_pred EeCCCCChHHHHHHHHHHHHhC-----CCeEecCCCCCCcchhhhhhchHHHHHhhhCC----CCCEEEEecCCchhHHH
Q 023801 73 LTDPAKGMKGAVQKAEEILAKT-----PNAYMLQQFENPANPKIHYETTGPELWKGSGG----RIDALVSGIGTGGTITG 143 (277)
Q Consensus 73 ~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~----~~d~iv~pvG~Gg~~aG 143 (277)
.+++ +|+++.+.++++..+. -+++-.+. .|+.. +.+|.+.++|+++|+.. .|++|++|+|+||.+.|
T Consensus 188 ~V~G--~fDd~q~~vk~~~~d~~~~~~~~l~saNS-iN~~R-i~~Q~~yyf~a~~ql~~~~~~~p~~~vVPtGnfgni~a 263 (460)
T cd01560 188 AVEG--DFDDCQSLVKALFADEDFNKKLKLSSANS-INWAR-ILAQIVYYFYAYLQLLKRGEGEKVEFSVPTGNFGNILA 263 (460)
T ss_pred EEcC--CHHHHHHHHHHHhcChhhHhcceEEEEec-cCHHH-HHHHHHHHHHHHHHhccccCCCCCEEEEECCcHHHHHH
Confidence 8886 7899988887765431 13444444 36766 78999999999999953 58999999999999999
Q ss_pred HHHHHhhcCCCcEEEEEecCCCCcc----CCCCC--C----CcccCccCCCCCccCcc---cc---c-------------
Q 023801 144 AGKFLKEKNPNIKLYGIEPTESPVL----SGGKP--G----PHKIQGIGAGFVPGVLE---VN---I------------- 194 (277)
Q Consensus 144 i~~~~~~~~~~~~vigV~~~~~~~~----~~~~~--~----~~~~~gl~~~~~~~~~~---~~---~------------- 194 (277)
.+.+.+.-.|-.|+|+++.... .+ ..+.. . .+...++... .|.++. +. .
T Consensus 264 ~~~Ak~mGlpi~kli~a~n~n~-il~~~~~~G~y~~~~~~~~T~spamdI~-~psn~eR~L~~l~~~~g~~~~~~m~~~~ 341 (460)
T cd01560 264 GYYAKKMGLPIKKLIVATNEND-VLRRFFKTGRYDRRESLKQTLSPAMDIL-KSSNFERLLFLLAGRDRTKVKMLMEEFE 341 (460)
T ss_pred HHHHHHcCCCCccEEEEeCCCh-HHHHHHHcCCCcCCCCCCCCcCchhhcC-CCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9998665457679999765443 22 12221 1 1222222221 122211 00 0
Q ss_pred -----------------cCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCC
Q 023801 195 -----------------IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERY 257 (277)
Q Consensus 195 -----------------~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~ 257 (277)
.-..+.|+|+|++++++.+++++|+++||.||++++++.++.++ ++..+|++.|..|.|+
T Consensus 342 ~~g~~~~~~~~l~~~~~~f~a~~vsD~ei~~~i~~~~~~~G~~vdPhtAva~aa~~~~~~~---~~~~~V~l~Ta~p~Kf 418 (460)
T cd01560 342 ATGFLSLPKEELKKLREDFSSGSVSDEETLETIREVYEETGYLIDPHTAVGVRAAERVRKS---PGTPGVVLSTAHPAKF 418 (460)
T ss_pred hcCCEecCHHHHHhhhccceEEEECHHHHHHHHHHHHHhcCEEECchHHHHHHHHHHHHhc---cCCCEEEEecCCcccC
Confidence 01568999999999999999999999999999999999887654 3457899998889988
Q ss_pred cch
Q 023801 258 LSS 260 (277)
Q Consensus 258 ~~~ 260 (277)
.+.
T Consensus 419 ~~~ 421 (460)
T cd01560 419 PEA 421 (460)
T ss_pred HHH
Confidence 764
No 83
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.95 E-value=6.4e-26 Score=191.78 Aligned_cols=251 Identities=24% Similarity=0.281 Sum_probs=182.9
Q ss_pred HHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCC---CCHHHHHHHHHcCCEEEEeCC-CCCh
Q 023801 5 GYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS---MSLERRIILRAFGAELVLTDP-AKGM 80 (277)
Q Consensus 5 a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~---~~~~~~~~~~~~Ga~v~~~~~-~~~~ 80 (277)
+...+.-|+++|+ ++.|.+...|.||.|+|.+|+++|++|+|||-.. -...++.+|+.+||+|+.|.. +...
T Consensus 91 ~lGQ~LLAkrMGK----~riIAETGAGQHGVAtAta~A~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TL 166 (396)
T COG0133 91 ALGQALLAKRMGK----TRIIAETGAGQHGVATATAAALFGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTL 166 (396)
T ss_pred HHHHHHHHHHhCC----ceEEeecCCCcccHHHHHHHHHhCCceEEEecchhhhhcccchhhhhhcCceEEEeccCCchH
Confidence 4556777889998 3567788889999999999999999999999753 244678899999999999973 4566
Q ss_pred HHHHHHHHHH-HHhCCCeEec-----CCCCCCcchhhhhhchHHHHHhhhC----CCCCEEEEecCCchhHHHHHHHHhh
Q 023801 81 KGAVQKAEEI-LAKTPNAYML-----QQFENPANPKIHYETTGPELWKGSG----GRIDALVSGIGTGGTITGAGKFLKE 150 (277)
Q Consensus 81 ~~~~~~a~~~-~~~~~~~~~~-----~~~~~~~~~~~g~~t~~~Ei~~Q~~----~~~d~iv~pvG~Gg~~aGi~~~~~~ 150 (277)
.++..+|.+. .......+|+ .|.--|.....-|+.||.|.-+|+. .-||.||.|||+|++..|++..|..
T Consensus 167 KDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~ 246 (396)
T COG0133 167 KDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID 246 (396)
T ss_pred HHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccC
Confidence 7777766544 4444455664 2333355556689999999988863 3499999999999999999988875
Q ss_pred cCCCcEEEEEecCCCC--------ccCCCCCCC--------------------cccCccCCCCC-ccC--ccccccCeEE
Q 023801 151 KNPNIKLYGIEPTESP--------VLSGGKPGP--------------------HKIQGIGAGFV-PGV--LEVNIIDEVV 199 (277)
Q Consensus 151 ~~~~~~vigV~~~~~~--------~~~~~~~~~--------------------~~~~gl~~~~~-~~~--~~~~~~~~~~ 199 (277)
.+++++||||+.+.- ++..++++. +...||.-+-+ |.. +...--.+.+
T Consensus 247 -d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~~tyllQd~~GQi~e~hSISAGLDYPgVGPeha~l~~~gRa~y~ 325 (396)
T COG0133 247 -DESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMKTYLLQDEDGQILESHSISAGLDYPGVGPEHAYLKDIGRAEYV 325 (396)
T ss_pred -CCCceEEEeccCcCccCCCccceeecCCCceeeecccceeeEcCCCCEeeeeeeccCCCCCCCChhHHHHHhcCceeEE
Confidence 378999999998752 233333310 00011111101 110 1111123589
Q ss_pred EeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchh
Q 023801 200 QVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSV 261 (277)
Q Consensus 200 ~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~ 261 (277)
.|+|+|++++.+.|.+.|||+.-..|+.|++.+++++++.. +++.+|+-+++.|+|++.++
T Consensus 326 ~itD~EAl~af~~L~r~EGIIPALESsHAlA~a~kla~~~~-~~~~ivvnlSGRGDKDv~tv 386 (396)
T COG0133 326 SITDEEALEAFQLLSRLEGIIPALESSHALAYALKLAPKLP-KDEIIVVNLSGRGDKDVFTV 386 (396)
T ss_pred ecChHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHhchhcC-CCcEEEEEccCCCcccHHHH
Confidence 99999999999999999999999999999999999987764 45566677767789988764
No 84
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.92 E-value=2.3e-23 Score=176.79 Aligned_cols=261 Identities=22% Similarity=0.254 Sum_probs=189.2
Q ss_pred hhHHHHHHHHHHcCCCCCCCcEEEe-eCCchHHHHHHHHHHHCCCeEEEEeCCC---CCHHHHHHHHHcCCEEEEeCCCC
Q 023801 3 RIGYSMISDAEAKGLITPGESVLIE-PTSGNTGIGLAFMAAAKQYRLIITMPAS---MSLERRIILRAFGAELVLTDPAK 78 (277)
Q Consensus 3 R~a~~~v~~a~~~g~l~~g~~~vv~-aSsGN~g~a~A~aa~~~Gl~~~vvvp~~---~~~~~~~~~~~~Ga~v~~~~~~~ 78 (277)
-+|....-.++..|. .+|+| ...|.+|.|++++|+.+|++|+|||-.. ..+-++.+|+.|||+|+..+...
T Consensus 113 NTAlAqaYyak~eg~-----~rl~TETGAGQWGsAlslA~alf~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~ 187 (432)
T COG1350 113 NTALAQAYYAKKEGA-----KRLTTETGAGQWGSALSLAAALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSEL 187 (432)
T ss_pred chHHHHHHHHHhcCc-----eeeecccCCchHHHHHHHHHHHhCceeEEEEEehhhhcchHHHHHHHHhCCeecCCCcch
Confidence 356666677777776 44554 4569999999999999999999999764 35667889999999999887521
Q ss_pred C----------------hHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhh---CCCCCEEEEecCCch
Q 023801 79 G----------------MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGS---GGRIDALVSGIGTGG 139 (277)
Q Consensus 79 ~----------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~---~~~~d~iv~pvG~Gg 139 (277)
. .--++..|.+.+-++++..|....--+. ...|+..+|+|..+|+ ++.||++|.+||+|+
T Consensus 188 Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~~kY~lGSVlnh-vllhQTViGlEakkQle~~~e~PDv~igcvGGGS 266 (432)
T COG1350 188 TEFGRKILKEDPDHPGSLGIAISEAIEYALKNENTKYSLGSVLNH-VLLHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGS 266 (432)
T ss_pred hHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCCceecchhHHHH-HHHHHHHHhHHHHHHHHhcCCCCCEEEEeccCCC
Confidence 1 1115666777766665444433222112 3679999999996665 567999999999999
Q ss_pred hHHHHHHHHhhc---C-CCcEEEEEecCCCCccCCCCCCC-----------cccCccCCCCCccCcc-------------
Q 023801 140 TITGAGKFLKEK---N-PNIKLYGIEPTESPVLSGGKPGP-----------HKIQGIGAGFVPGVLE------------- 191 (277)
Q Consensus 140 ~~aGi~~~~~~~---~-~~~~vigV~~~~~~~~~~~~~~~-----------~~~~gl~~~~~~~~~~------------- 191 (277)
+++|+..-|-.. + ...++|+|+|..||.+..++..- -.+-.||.+.+|+.+.
T Consensus 267 Nfag~~yPfi~d~l~g~~~~~fiAvep~a~P~lT~GeY~YD~gDtagltPllKMyTlGhd~vpPpihAgGLRYHG~aPtl 346 (432)
T COG1350 267 NFAGLTYPFIGDKLRGKKETRFIAVEPKACPKLTKGEYRYDFGDTAGLTPLLKMYTLGHDYVPPPIHAGGLRYHGVAPTL 346 (432)
T ss_pred ccccccchhhhhhhcCCceeEEEEeCCccCCccccceeeccCCchhccchhhhhhccCCCccCCCcccccccccCcChHH
Confidence 999998766432 2 23899999999999887654310 1244666666655443
Q ss_pred ----ccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHH
Q 023801 192 ----VNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVR 267 (277)
Q Consensus 192 ----~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~ 267 (277)
..-+-+....+.+|++++.+.|++.|||+.-|.|+.|+.++++.+.+.+..+++.|+++.-+|+-.+|-.-|+++.
T Consensus 347 s~L~~~Giv~a~ay~Q~Evfeaa~lFa~~EGiVPAPEsaHAi~~aid~A~~a~~~geekvI~fnlSGHGllDL~~Y~~yl 426 (432)
T COG1350 347 SLLVKEGIVEARAYDQEEVFEAAVLFARTEGIVPAPESAHAIKAAIDEALKAREEGEEKVILFNLSGHGLLDLSAYDKYL 426 (432)
T ss_pred HHHHHcCcccceecChHHHHHHHHHHHHhcCCccCCcchhhHHHHHHHHHhccccCceeEEEEeccCccccchhhHHHHh
Confidence 2223457899999999999999999999999999999999999887766444444444445556557766788776
Q ss_pred Hh
Q 023801 268 KE 269 (277)
Q Consensus 268 ~~ 269 (277)
..
T Consensus 427 ~g 428 (432)
T COG1350 427 EG 428 (432)
T ss_pred hh
Confidence 53
No 85
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.88 E-value=3.5e-21 Score=164.90 Aligned_cols=250 Identities=20% Similarity=0.232 Sum_probs=171.2
Q ss_pred hHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCC---CCHHHHHHHHHcCCEEEEeCC-CCC
Q 023801 4 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS---MSLERRIILRAFGAELVLTDP-AKG 79 (277)
Q Consensus 4 ~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~---~~~~~~~~~~~~Ga~v~~~~~-~~~ 79 (277)
.|...+..+.+.|+ ++.|.+...|.||.|+|.+|+++|++|+|+|-.. ..+-++.+||.+||+|+.+.. ...
T Consensus 158 nav~QallakrlGk----knviaETGAGQhGvatA~a~a~FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~t 233 (477)
T KOG1395|consen 158 NAVAQALLAKRLGK----KNVIAETGAGQHGVATATACAKFGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRT 233 (477)
T ss_pred cHHHHHHHHHHhcc----cceeeccCCCccchHHHHHHHHhCCceEEEechhHHHHHHHHHHHHHHhCceEeecCCCcee
Confidence 35556667778887 2566777889999999999999999999999653 356789999999999999974 223
Q ss_pred hHHHHHHHHHHHHhC-CCeEec-----CCCCCCcchhhhhhchHHHHHhhh----CCCCCEEEEecCCchhHHHHHHHHh
Q 023801 80 MKGAVQKAEEILAKT-PNAYML-----QQFENPANPKIHYETTGPELWKGS----GGRIDALVSGIGTGGTITGAGKFLK 149 (277)
Q Consensus 80 ~~~~~~~a~~~~~~~-~~~~~~-----~~~~~~~~~~~g~~t~~~Ei~~Q~----~~~~d~iv~pvG~Gg~~aGi~~~~~ 149 (277)
.+++-..+-++.-.+ .-.+|+ .|+--|.....-+.+|+-|-..|+ +..||+||.++|+|++.+|+..-|.
T Consensus 234 Lrda~sea~r~wvt~~ett~y~~gs~~gphp~pt~vr~fhsvIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~ 313 (477)
T KOG1395|consen 234 LRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVVRTFHSVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFI 313 (477)
T ss_pred hhcccchhhhhhhhhhheeeeeecccCCCCCcHHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhh
Confidence 344444443333222 122332 222223333345788888887665 3459999999999999999998887
Q ss_pred hcCCCcEEEEEecCCCCc----c----CCCCCCC-----c--ccCccCCCCCccCc----------------cccccCeE
Q 023801 150 EKNPNIKLYGIEPTESPV----L----SGGKPGP-----H--KIQGIGAGFVPGVL----------------EVNIIDEV 198 (277)
Q Consensus 150 ~~~~~~~vigV~~~~~~~----~----~~~~~~~-----~--~~~gl~~~~~~~~~----------------~~~~~~~~ 198 (277)
.. ..++.|+|+..+.+. . ..++.+. + ..+..|..+.|..+ ...--.++
T Consensus 314 ~d-k~v~~igveaagdg~dtp~hsatltagd~Gv~hG~~ty~lq~~dGqi~~phsIsAGLdYpGvgPels~~k~~grae~ 392 (477)
T KOG1395|consen 314 RD-KSVGMIGVEAAGDGVDTPKHSATLTAGDVGVFHGVTTYVLQDTDGQIFDPHSISAGLDYPGVGPELSHLKETGRAEF 392 (477)
T ss_pred cc-chhheeeeeecccccCCcchhceeecccccccccceeeeeeccCCccccCCccccCCCCCCCChhHHHHHhcCceeE
Confidence 53 457888888776532 1 1122110 0 11111111111111 11122369
Q ss_pred EEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcc
Q 023801 199 VQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLS 259 (277)
Q Consensus 199 ~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~ 259 (277)
+.|+|.|++++.++|.+.|||+.-|.+..|+++..++.+.. .+++.+|+-+++.|+|++.
T Consensus 393 isitd~eclegfk~~srlEGIIPAlEssHAva~~~~lck~l-~~~k~ivi~~sGrGdkDvq 452 (477)
T KOG1395|consen 393 ISITDAECLEGFKQLSRLEGIIPALESSHAVAGEAELCKTL-PEDKVIVINISGRGDKDVQ 452 (477)
T ss_pred EecChHHHHHHHHHHHHhcccccCCchhhHHHHHHHhcccc-CCCcEEEEEecCCCCchHH
Confidence 99999999999999999999999998899999988887765 3788888888888887764
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.85 E-value=2e-20 Score=157.60 Aligned_cols=210 Identities=20% Similarity=0.256 Sum_probs=180.0
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCCC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQF 103 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 103 (277)
.+.+.|+||.|.|+-..++.+|++++|-|..++...|.+++|..|.+|+.... +|..+.+.-++.++..|..||++..
T Consensus 162 sIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~WKKd~LRs~gV~ViEYe~--DY~~AVeeGRk~a~~DP~c~FiDDE 239 (443)
T COG3048 162 SIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLRSHGVTVVEYEQ--DYGVAVEEGRKEAESDPNCFFIDDE 239 (443)
T ss_pred eEeecccCccceehhhhhhhhcceEEEEecchHHHHHHHHHHhcCceEEEecc--hhhHHHHHhhhhhccCCceEEeccc
Confidence 68889999999999999999999999999999999999999999999999984 8899999999999999988999877
Q ss_pred CCCcchhhhhhchHHHHHhhhCC--------CCCEEEEecCCchhHHHHHHHHhhc-CCCcEEEEEecCCCCccCCC---
Q 023801 104 ENPANPKIHYETTGPELWKGSGG--------RIDALVSGIGTGGTITGAGKFLKEK-NPNIKLYGIEPTESPVLSGG--- 171 (277)
Q Consensus 104 ~~~~~~~~g~~t~~~Ei~~Q~~~--------~~d~iv~pvG~Gg~~aGi~~~~~~~-~~~~~vigV~~~~~~~~~~~--- 171 (277)
++-.. ..||...+.-+-.|+.. .|-.|..|+|-||.-.|++.++|.. +.++.++-+||..+|++..+
T Consensus 240 ~S~~L-FLGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFaEPthsPcMlLGv~t 318 (443)
T COG3048 240 NSRTL-FLGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVYT 318 (443)
T ss_pred chhhh-hhhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEEecCCCChHHHHhhhh
Confidence 66555 78999999999999842 3668999999999999999999976 57899999999999987521
Q ss_pred ------------CCCCcccCccCCCCCccC---ccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHH
Q 023801 172 ------------KPGPHKIQGIGAGFVPGV---LEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIA 236 (277)
Q Consensus 172 ------------~~~~~~~~gl~~~~~~~~---~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~ 236 (277)
..+.+.++||+.+..... .....+++.|+|+|+..++...+|++.||+.+|||+-+++.+-.++.
T Consensus 319 GlHe~ISVqdiGidn~TaADGLAVgRpSgfVgr~me~lL~G~~TvdD~~ly~lL~~L~~~e~~rlEPSalAgm~Gp~~~~ 398 (443)
T COG3048 319 GLHEQISVQDIGIDNLTAADGLAVGRPSGFVGRAMERLLDGYYTVDDQTLYDLLGWLAQEEGIRLEPSALAGMAGPQRVC 398 (443)
T ss_pred ccccceeeEeecccccccccceeecCccchHHHHHHHHhCCcEEechHHHHHHHHHHHHhcCcccCchhhhcccCcceee
Confidence 123455678877653322 34577899999999999999999999999999999888887766554
No 87
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=93.35 E-value=0.69 Score=37.19 Aligned_cols=101 Identities=11% Similarity=0.056 Sum_probs=62.4
Q ss_pred HHHHHHHHHHCCCeE-EEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCcchhhh
Q 023801 34 GIGLAFMAAAKQYRL-IITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIH 112 (277)
Q Consensus 34 g~a~A~aa~~~Gl~~-~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 112 (277)
|..+..+++.+|.++ .-+.+.+.-..-+..+...|-+|.++++. .....+.+..+.+++|+.-.+..++.+.. ..-
T Consensus 13 G~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~--~~~~~~~~~~l~~~yP~l~ivg~~~g~f~-~~~ 89 (172)
T PF03808_consen 13 GMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGS--EEVLEKAAANLRRRYPGLRIVGYHHGYFD-EEE 89 (172)
T ss_pred CHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCC--HHHHHHHHHHHHHHCCCeEEEEecCCCCC-hhh
Confidence 578899999999886 33323333344566667789999999963 34455666777788877554433322222 122
Q ss_pred hhchHHHHHhhhCCCCCEEEEecCCchh
Q 023801 113 YETTGPELWKGSGGRIDALVSGIGTGGT 140 (277)
Q Consensus 113 ~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~ 140 (277)
...+..+|-+ ..||.|+++.|+---
T Consensus 90 ~~~i~~~I~~---~~pdiv~vglG~PkQ 114 (172)
T PF03808_consen 90 EEAIINRINA---SGPDIVFVGLGAPKQ 114 (172)
T ss_pred HHHHHHHHHH---cCCCEEEEECCCCHH
Confidence 2333333322 369999999998753
No 88
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=91.77 E-value=2.1 Score=38.20 Aligned_cols=57 Identities=26% Similarity=0.436 Sum_probs=44.4
Q ss_pred cCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023801 15 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 15 ~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
.+.+++|.+.||.+.+|.-|..+--.|+.+|...+++ .. +..|.+.++.+||+.+..
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~-~~--s~~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAV-VS--SSEKLELLKELGADHVIN 193 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEE-ec--CHHHHHHHHhcCCCEEEc
Confidence 5778889888999999999999999999999843443 22 336666889999976654
No 89
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.56 E-value=2.2 Score=38.24 Aligned_cols=53 Identities=13% Similarity=0.171 Sum_probs=41.4
Q ss_pred CCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023801 18 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 71 (277)
Q Consensus 18 l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v 71 (277)
+.+|.+.+|. .+|.-|...+..++.+|.+++++.+...++.|++.++.+|++.
T Consensus 170 ~~~g~~vlI~-G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~ 222 (355)
T cd08230 170 TWNPRRALVL-GAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATY 222 (355)
T ss_pred cCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Confidence 4566565555 5799999999999999998666655555678889999999985
No 90
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=89.93 E-value=3.6 Score=33.00 Aligned_cols=119 Identities=17% Similarity=0.112 Sum_probs=66.0
Q ss_pred HHHHHHHHHHCCCeEEEEeCC-CCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCcchhhh
Q 023801 34 GIGLAFMAAAKQYRLIITMPA-SMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIH 112 (277)
Q Consensus 34 g~a~A~aa~~~Gl~~~vvvp~-~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 112 (277)
|..+.++++.+|.+..--++. +.-..-...+...+.+|.++++. .+...+.++.+.+++|+...+..++.+.. ...
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~--~~~~~~~~~~l~~~yp~l~i~g~~~g~~~-~~~ 87 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAK--PEVLEKAAERLRARYPGLKIVGYHHGYFG-PEE 87 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCcEEEEecCCCCC-hhh
Confidence 567889999999872222222 11223455556678999999863 23444555677778877554432322222 111
Q ss_pred hhchHHHHHhhhC-CCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 113 YETTGPELWKGSG-GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 113 ~~t~~~Ei~~Q~~-~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
.. +|.+++. ..||.|+++.|+---=. .....+...+..-+++|
T Consensus 88 ~~----~i~~~I~~~~pdiv~vglG~PkQE~-~~~~~~~~l~~~v~~~v 131 (171)
T cd06533 88 EE----EIIERINASGADILFVGLGAPKQEL-WIARHKDRLPVPVAIGV 131 (171)
T ss_pred HH----HHHHHHHHcCCCEEEEECCCCHHHH-HHHHHHHHCCCCEEEEe
Confidence 11 2444442 35999999999864332 22333443444445555
No 91
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=89.46 E-value=5.7 Score=35.45 Aligned_cols=59 Identities=22% Similarity=0.322 Sum_probs=42.4
Q ss_pred HHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023801 12 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 12 a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
++.+..+++|.+ |+...+|.-|.+++.+|+.+|.+++++ ..++.|+..++.+|++.++.
T Consensus 158 a~~~~~~~~g~~-VlV~G~G~vG~~a~~~a~~~G~~vi~~---~~~~~~~~~~~~~Ga~~~i~ 216 (349)
T TIGR03201 158 AAVQAGLKKGDL-VIVIGAGGVGGYMVQTAKAMGAAVVAI---DIDPEKLEMMKGFGADLTLN 216 (349)
T ss_pred HHHhcCCCCCCE-EEEECCCHHHHHHHHHHHHcCCeEEEE---cCCHHHHHHHHHhCCceEec
Confidence 444566788865 444445999999999999999974433 33567888888999965543
No 92
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=89.08 E-value=3.8 Score=30.56 Aligned_cols=32 Identities=22% Similarity=0.431 Sum_probs=19.9
Q ss_pred CCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEEe
Q 023801 127 RIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIE 161 (277)
Q Consensus 127 ~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV~ 161 (277)
.+|.+|-++|++.++.-....++. .=+++-+-
T Consensus 58 ~~d~vid~~g~~~~~~~~~~~l~~---~G~~v~vg 89 (130)
T PF00107_consen 58 GVDVVIDCVGSGDTLQEAIKLLRP---GGRIVVVG 89 (130)
T ss_dssp SEEEEEESSSSHHHHHHHHHHEEE---EEEEEEES
T ss_pred cceEEEEecCcHHHHHHHHHHhcc---CCEEEEEE
Confidence 588999999887766554444443 33555543
No 93
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=88.72 E-value=6.8 Score=34.24 Aligned_cols=58 Identities=21% Similarity=0.249 Sum_probs=43.7
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
+.+.+++|.+.+|...+|.-|.++...|+.+|.+++++. .++.+...++.+|++-++.
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~---~s~~~~~~l~~~Ga~~vi~ 194 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCA---GSDDKVAWLKELGFDAVFN 194 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCCEEEe
Confidence 456778886666776789999999999999999855443 3457888888899854443
No 94
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=88.66 E-value=4 Score=35.22 Aligned_cols=58 Identities=24% Similarity=0.221 Sum_probs=40.7
Q ss_pred HHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 12 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 12 a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
++++....+|.+ |+....|.-|..++..|+.+|.+.++++ +.++.|++..+.+|++.+
T Consensus 112 al~~~~~~~g~~-VlV~G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~ 169 (280)
T TIGR03366 112 ALEAAGDLKGRR-VLVVGAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATAL 169 (280)
T ss_pred HHHhccCCCCCE-EEEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEe
Confidence 344434457755 4555679999999999999999745544 446678888888998543
No 95
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=88.45 E-value=7.6 Score=35.50 Aligned_cols=57 Identities=25% Similarity=0.345 Sum_probs=43.1
Q ss_pred HHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023801 12 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 71 (277)
Q Consensus 12 a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v 71 (277)
+.++..+.+|.+.+| ..+|.-|..++..|+.+|.+.+++. +..+.+++..+.+|++.
T Consensus 177 a~~~~~~~~g~~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~--d~~~~r~~~a~~~Ga~~ 233 (393)
T TIGR02819 177 GAVTAGVGPGSTVYI-AGAGPVGLAAAASAQLLGAAVVIVG--DLNPARLAQARSFGCET 233 (393)
T ss_pred HHHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHcCCeE
Confidence 445567788865445 7779999999999999999876643 22467888889999974
No 96
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=87.90 E-value=9.6 Score=31.71 Aligned_cols=98 Identities=17% Similarity=0.244 Sum_probs=59.6
Q ss_pred EEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCCCC
Q 023801 25 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFE 104 (277)
Q Consensus 25 vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 104 (277)
+|+..+|+.|+.++-+....+.++++++... +......++..|++++..+- ++.......+ +.-...+.+.+..
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d~----~~~~~l~~al-~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEADY----DDPESLVAAL-KGVDAVFSVTPPS 75 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES-T----T-HHHHHHHH-TTCSEEEEESSCS
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeeccc----CCHHHHHHHH-cCCceEEeecCcc
Confidence 6888999999999999999999999988776 44567778889999986653 2222222222 2222344444443
Q ss_pred CCcchhhhhhchHHHHHhhhCCCCCEEE
Q 023801 105 NPANPKIHYETTGPELWKGSGGRIDALV 132 (277)
Q Consensus 105 ~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv 132 (277)
++.. ......+ .+...+. + +.++|
T Consensus 76 ~~~~-~~~~~~l-i~Aa~~a-g-Vk~~v 99 (233)
T PF05368_consen 76 HPSE-LEQQKNL-IDAAKAA-G-VKHFV 99 (233)
T ss_dssp CCCH-HHHHHHH-HHHHHHH-T--SEEE
T ss_pred hhhh-hhhhhhH-HHhhhcc-c-cceEE
Confidence 3332 3333444 3334443 2 77775
No 97
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=87.88 E-value=3.2 Score=33.38 Aligned_cols=118 Identities=17% Similarity=0.123 Sum_probs=72.6
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 102 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 102 (277)
++|-.-..|+-|+++|..++.+|++++.+-|...+.. .....+.+. . +.++ +.++- +...++-
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~---~~~~~~~~~--~----~l~e-------ll~~a-Div~~~~ 99 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE---GADEFGVEY--V----SLDE-------LLAQA-DIVSLHL 99 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH---HHHHTTEEE--S----SHHH-------HHHH--SEEEE-S
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh---hccccccee--e----ehhh-------hcchh-hhhhhhh
Confidence 4688889999999999999999999998877654332 334445422 1 2232 22333 4443322
Q ss_pred CCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHH--HHHHHHhhcCCCcEEEEEecCCC
Q 023801 103 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTIT--GAGKFLKEKNPNIKLYGIEPTES 165 (277)
Q Consensus 103 ~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~a--Gi~~~~~~~~~~~~vigV~~~~~ 165 (277)
-.++.+ ...+..|.++++ +++.+++-+|-|+++- .+..++++ ....-.+.++...
T Consensus 100 plt~~T----~~li~~~~l~~m--k~ga~lvN~aRG~~vde~aL~~aL~~--g~i~ga~lDV~~~ 156 (178)
T PF02826_consen 100 PLTPET----RGLINAEFLAKM--KPGAVLVNVARGELVDEDALLDALES--GKIAGAALDVFEP 156 (178)
T ss_dssp SSSTTT----TTSBSHHHHHTS--TTTEEEEESSSGGGB-HHHHHHHHHT--TSEEEEEESS-SS
T ss_pred cccccc----ceeeeeeeeecc--ccceEEEeccchhhhhhhHHHHHHhh--ccCceEEEECCCC
Confidence 223332 456778889998 5799999999999874 44555554 3345555554433
No 98
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=87.73 E-value=4 Score=36.57 Aligned_cols=61 Identities=23% Similarity=0.241 Sum_probs=47.2
Q ss_pred HHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 11 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 11 ~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
+++.+..++||. .|....-|-.|....-+|+.+|.+++.+ +.++.|++..+.+||+.+...
T Consensus 157 ~alk~~~~~pG~-~V~I~G~GGlGh~avQ~Aka~ga~Via~---~~~~~K~e~a~~lGAd~~i~~ 217 (339)
T COG1064 157 RALKKANVKPGK-WVAVVGAGGLGHMAVQYAKAMGAEVIAI---TRSEEKLELAKKLGADHVINS 217 (339)
T ss_pred eehhhcCCCCCC-EEEEECCcHHHHHHHHHHHHcCCeEEEE---eCChHHHHHHHHhCCcEEEEc
Confidence 455667788994 5888888888888888888888777776 556788888888898877765
No 99
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=87.60 E-value=4.1 Score=35.61 Aligned_cols=69 Identities=22% Similarity=0.316 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHcCCCCCCCcEEEee-CCchHHHHHHHHHHHCCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeCC
Q 023801 4 IGYSMISDAEAKGLITPGESVLIEP-TSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDP 76 (277)
Q Consensus 4 ~a~~~v~~a~~~g~l~~g~~~vv~a-SsGN~g~a~A~aa~~~Gl~~~vvvp~~~~-~~~~~~~~~~Ga~v~~~~~ 76 (277)
+|+-||++-.+ |.+| +.|+-- ...--|+++--.|+.+||+.+=++..... +.-.++++.+||+-++.+.
T Consensus 147 TAyrmL~dfv~---L~~G-D~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ieel~~~Lk~lGA~~ViTee 217 (354)
T KOG0025|consen 147 TAYRMLKDFVQ---LNKG-DSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEELKKQLKSLGATEVITEE 217 (354)
T ss_pred HHHHHHHHHHh---cCCC-CeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHHHHHHHHHcCCceEecHH
Confidence 57778888876 5566 445543 33456778888999999999988876554 4456778999999999874
No 100
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=87.28 E-value=8.4 Score=31.72 Aligned_cols=49 Identities=16% Similarity=0.094 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHc--CCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEE
Q 023801 3 RIGYSMISDAEAK--GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIIT 51 (277)
Q Consensus 3 R~a~~~v~~a~~~--g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vv 51 (277)
|++.+.++.+.+. +.....+++++.-..||.|..+|......|.+++++
T Consensus 7 ~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 7 YGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVA 57 (200)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 5777888888776 222222356888888999999999999999987744
No 101
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=86.36 E-value=5.1 Score=35.34 Aligned_cols=60 Identities=20% Similarity=0.129 Sum_probs=46.2
Q ss_pred HcCCCCCCCcEEEeeCC---chHHHHHHHHHHHCCCeEEEEeCCCC--CHHHHHHHHHcCCEEEEeC
Q 023801 14 AKGLITPGESVLIEPTS---GNTGIGLAFMAAAKQYRLIITMPASM--SLERRIILRAFGAELVLTD 75 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSs---GN~g~a~A~aa~~~Gl~~~vvvp~~~--~~~~~~~~~~~Ga~v~~~~ 75 (277)
..|.++ | .+|+-... +|.++|+..+++++|++++++.|+.. ++..+..++..|+++..++
T Consensus 144 ~~g~l~-g-~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 144 EFGRLD-G-LKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETE 208 (301)
T ss_pred HhCCCC-C-CEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEEC
Confidence 356653 4 34666666 59999999999999999999999874 5555667777899988776
No 102
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=86.25 E-value=8.2 Score=34.11 Aligned_cols=56 Identities=25% Similarity=0.356 Sum_probs=42.4
Q ss_pred HHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023801 12 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 71 (277)
Q Consensus 12 a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v 71 (277)
+++.+.+.+|.+.+|...+|..|.+++..|+.+|.+++++.. +. +...++.+|++.
T Consensus 169 ~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~---~~-~~~~~~~~g~~~ 224 (350)
T cd08274 169 MLERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAG---AA-KEEAVRALGADT 224 (350)
T ss_pred HHhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeC---ch-hhHHHHhcCCeE
Confidence 345667888877777777799999999999999999655542 22 667778888863
No 103
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=85.83 E-value=22 Score=34.76 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=41.7
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
.+++.+..|..|+.+|-.-.+.|++++++ +.++.+.+.++.+|.+++.-|.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~g~~v~~GDa 451 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVL---DHDPDHIETLRKFGMKVFYGDA 451 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhcCCeEEEEeC
Confidence 57999999999999999999999998877 4456778888888877766664
No 104
>PRK14030 glutamate dehydrogenase; Provisional
Probab=85.60 E-value=6.2 Score=36.73 Aligned_cols=50 Identities=12% Similarity=-0.012 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEe
Q 023801 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITM 52 (277)
Q Consensus 3 R~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvv 52 (277)
|+.++.++.+++...+...+.+|+....||-|..+|.....+|.+++.+-
T Consensus 209 ~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavS 258 (445)
T PRK14030 209 FGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTIS 258 (445)
T ss_pred HHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 67778888877654444445689999999999999999999999988853
No 105
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=85.36 E-value=13 Score=32.93 Aligned_cols=58 Identities=26% Similarity=0.331 Sum_probs=40.4
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
++...+++|.+.+|.+ +|..|.+++..|+.+|.+.++++ ..++.+...++.+|++.++
T Consensus 165 l~~~~~~~g~~vlI~g-~g~vG~~a~q~a~~~G~~~v~~~--~~~~~~~~~~~~~ga~~~i 222 (351)
T cd08233 165 VRRSGFKPGDTALVLG-AGPIGLLTILALKAAGASKIIVS--EPSEARRELAEELGATIVL 222 (351)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHhCCCEEE
Confidence 3556677886655654 68999999999999998544443 2355677777778875443
No 106
>KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism]
Probab=85.08 E-value=1.9 Score=35.87 Aligned_cols=52 Identities=12% Similarity=0.079 Sum_probs=41.7
Q ss_pred EEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEe
Q 023801 198 VVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIF 250 (277)
Q Consensus 198 ~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~ 250 (277)
...|+++|+.+++...++..+.+++|.+|++.-...+...+.. +.-.++++-
T Consensus 148 se~vS~ee~~~ti~k~yes~~YiLdPHTAVav~~~~r~idkt~-ps~~~i~ls 199 (266)
T KOG2616|consen 148 SERVSNEETTQTIKKIYESNHYILDPHTAVAVNYHYRQIDKTQ-PSIPYICLS 199 (266)
T ss_pred hhhcCcHHHHHHHHHHhccCCeeecCchHHHHHHHHHHHhccC-CCCceEEec
Confidence 4678999999999999999999999999999998888877653 333344443
No 107
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=84.96 E-value=12 Score=33.54 Aligned_cols=57 Identities=25% Similarity=0.232 Sum_probs=41.0
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
.+.+.+++|.+.+|. .+|--|.+++..|+.+|.+.++++ ..++.|++.++.+|++-+
T Consensus 169 ~~~~~~~~g~~VlV~-G~g~vG~~a~~~ak~~G~~~Vi~~--~~~~~~~~~~~~~Ga~~~ 225 (358)
T TIGR03451 169 VNTGGVKRGDSVAVI-GCGGVGDAAIAGAALAGASKIIAV--DIDDRKLEWAREFGATHT 225 (358)
T ss_pred HhccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHcCCceE
Confidence 455677888665555 579999999999999998744444 234567888888888543
No 108
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=84.94 E-value=13 Score=32.89 Aligned_cols=56 Identities=21% Similarity=0.211 Sum_probs=42.7
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHH-cCCEEE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA-FGAELV 72 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~-~Ga~v~ 72 (277)
+.+.+++|.+.+|...+|.-|.+++..|+.+|.++++.. .++.|.+.++. +|++-+
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~---~~~~~~~~~~~~lGa~~v 201 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSA---GSDEKVDLLKNKLGFDDA 201 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHhcCCcee
Confidence 446788887777777789999999999999999855443 24577787777 888543
No 109
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=84.27 E-value=2.3 Score=38.43 Aligned_cols=54 Identities=22% Similarity=0.146 Sum_probs=43.4
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
..++..+||..+.-+|+.+..++=.-.|++|.-+.......+...|++++++|-
T Consensus 41 ~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di 94 (363)
T PF01041_consen 41 KYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDI 94 (363)
T ss_dssp SEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-B
T ss_pred CeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEec
Confidence 478999999999999999843333378889999899999999999999999984
No 110
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=84.07 E-value=22 Score=34.64 Aligned_cols=97 Identities=14% Similarity=0.244 Sum_probs=64.9
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 102 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 102 (277)
.+++.+..|..|+.+|-.-...|++++++ +.++.+++.++.+|..++.-|..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~g~~v~~GDat------------------------- 452 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVL---ERDISAVNLMRKYGYKVYYGDAT------------------------- 452 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhCCCeEEEeeCC-------------------------
Confidence 46899999999999999888889988776 33456677777776665554431
Q ss_pred CCCCcchhhhhhchHHHHHhhhC-CCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEEe
Q 023801 103 FENPANPKIHYETTGPELWKGSG-GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIE 161 (277)
Q Consensus 103 ~~~~~~~~~g~~t~~~Ei~~Q~~-~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV~ 161 (277)
. .|++++.+ .+.|.+|+.++.=-.-.-+....|+.+|+.+|++-.
T Consensus 453 -----~---------~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 453 -----Q---------LELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred -----C---------HHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 1 13333332 246777777776555555666677777888887654
No 111
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=83.94 E-value=14 Score=33.29 Aligned_cols=56 Identities=20% Similarity=0.345 Sum_probs=40.5
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
+...+++|.+.+|. .+|.-|..++..|+.+|.+.++++ ..++.|++..+.+|++.+
T Consensus 185 ~~~~i~~g~~VlV~-G~G~vG~~a~~lak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~ 240 (371)
T cd08281 185 NTAGVRPGQSVAVV-GLGGVGLSALLGAVAAGASQVVAV--DLNEDKLALARELGATAT 240 (371)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEE--cCCHHHHHHHHHcCCceE
Confidence 45667888665565 579999999999999998534433 335677888888998543
No 112
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=83.47 E-value=6 Score=35.07 Aligned_cols=57 Identities=18% Similarity=0.117 Sum_probs=40.9
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
+++..+++|.+.+|.. .|.-|.+++..|+.+|.+++++ ..++.|++.++.+|++.++
T Consensus 158 ~~~~~~~~g~~VlV~G-~g~iG~~a~~~a~~~G~~vi~~---~~~~~~~~~a~~~Ga~~vi 214 (329)
T TIGR02822 158 LLRASLPPGGRLGLYG-FGGSAHLTAQVALAQGATVHVM---TRGAAARRLALALGAASAG 214 (329)
T ss_pred HHhcCCCCCCEEEEEc-CCHHHHHHHHHHHHCCCeEEEE---eCChHHHHHHHHhCCceec
Confidence 3446778886655554 5888999999999999874443 2245678889999997543
No 113
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=83.40 E-value=20 Score=31.81 Aligned_cols=57 Identities=26% Similarity=0.386 Sum_probs=42.0
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
++...+.+|.+.+| ..+|..|.+++..|+.+|.+.++++.. ++.|...++.+|++.+
T Consensus 167 ~~~~~~~~g~~vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~v 223 (350)
T cd08256 167 VDRANIKFDDVVVL-AGAGPLGLGMIGAARLKNPKKLIVLDL--KDERLALARKFGADVV 223 (350)
T ss_pred HHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEcC--CHHHHHHHHHcCCcEE
Confidence 35667788855444 667999999999999999876665443 4567777788888543
No 114
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=83.24 E-value=8.3 Score=33.85 Aligned_cols=58 Identities=19% Similarity=0.298 Sum_probs=43.7
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
+.+.+++|.+.+|...+|--|.+++..|+..|.+++++.. ++.|...++.+|++.++.
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~---s~~~~~~~~~lGa~~vi~ 189 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKVAYLKKLGFDVAFN 189 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEe
Confidence 5667888866666666899999999999999997655433 456788888899865443
No 115
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=83.22 E-value=12 Score=30.17 Aligned_cols=98 Identities=12% Similarity=0.094 Sum_probs=56.2
Q ss_pred HHHHHHHHHHCCCeEEEEeCC-CCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCcchhhh
Q 023801 34 GIGLAFMAAAKQYRLIITMPA-SMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIH 112 (277)
Q Consensus 34 g~a~A~aa~~~Gl~~~vvvp~-~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 112 (277)
|..+.++++.+|.+..--++. +.-..-.......|..|.++++. .....+.++.+.+++|+.-.+.. +.+....
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~--~~v~~~~~~~l~~~yP~l~i~g~-~g~f~~~-- 87 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGK--PDVLQQLKVKLIKEYPKLKIVGA-FGPLEPE-- 87 (177)
T ss_pred cHHHHHHHHHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCCEEEEE-CCCCChH--
Confidence 467889999998763211121 11122344455678899999863 24455666777778876543322 2222211
Q ss_pred hhchHHHHHhhhC-CCCCEEEEecCCch
Q 023801 113 YETTGPELWKGSG-GRIDALVSGIGTGG 139 (277)
Q Consensus 113 ~~t~~~Ei~~Q~~-~~~d~iv~pvG~Gg 139 (277)
--.+|.+++. ..||.++++.|+=-
T Consensus 88 ---~~~~i~~~I~~s~~dil~VglG~Pk 112 (177)
T TIGR00696 88 ---ERKAALAKIARSGAGIVFVGLGCPK 112 (177)
T ss_pred ---HHHHHHHHHHHcCCCEEEEEcCCcH
Confidence 1134555543 35999999998753
No 116
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=83.13 E-value=33 Score=30.42 Aligned_cols=55 Identities=20% Similarity=0.211 Sum_probs=39.2
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
.+...+++|.+.+|. .+|..|.+++..|+.+|.+.++.+.. ++.+....+.+|++
T Consensus 159 ~~~~~~~~g~~vlI~-g~g~iG~~~~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~ 213 (351)
T cd08285 159 AELANIKLGDTVAVF-GIGPVGLMAVAGARLRGAGRIIAVGS--RPNRVELAKEYGAT 213 (351)
T ss_pred HHccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCc
Confidence 455677888665555 57899999999999999865444433 34667777778874
No 117
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=82.71 E-value=22 Score=31.76 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=41.7
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHH-HcCCEEEE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR-AFGAELVL 73 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~-~~Ga~v~~ 73 (277)
+.+.+++|.+.+|...+|.-|..+...|+.+|.+++++ ..++.|...++ .+|++-++
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~---~~~~~k~~~~~~~lGa~~vi 209 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGS---AGSSQKVDLLKNKLGFDEAF 209 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEE---cCCHHHHHHHHHhcCCCEEE
Confidence 34667888676677777999999999999999875443 23456777776 68986544
No 118
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=82.70 E-value=18 Score=28.74 Aligned_cols=94 Identities=17% Similarity=0.226 Sum_probs=55.3
Q ss_pred CCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCC
Q 023801 17 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPN 96 (277)
Q Consensus 17 ~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (277)
.+-.| +.++...-|+-|+++|...+.+|.+++|+ +..|.+..+....|=++...+ + .+. ..+
T Consensus 19 ~~l~G-k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~---e~DPi~alqA~~dGf~v~~~~------~-------a~~-~ad 80 (162)
T PF00670_consen 19 LMLAG-KRVVVIGYGKVGKGIARALRGLGARVTVT---EIDPIRALQAAMDGFEVMTLE------E-------ALR-DAD 80 (162)
T ss_dssp S--TT-SEEEEE--SHHHHHHHHHHHHTT-EEEEE----SSHHHHHHHHHTT-EEE-HH------H-------HTT-T-S
T ss_pred eeeCC-CEEEEeCCCcccHHHHHHHhhCCCEEEEE---ECChHHHHHhhhcCcEecCHH------H-------HHh-hCC
Confidence 34444 56899999999999999999999888886 456667666667777765321 1 112 224
Q ss_pred eEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCc
Q 023801 97 AYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTG 138 (277)
Q Consensus 97 ~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~G 138 (277)
.+ +.--.+. ..+-.|.++|+ +.+.|++.+|+-
T Consensus 81 i~-vtaTG~~-------~vi~~e~~~~m--kdgail~n~Gh~ 112 (162)
T PF00670_consen 81 IF-VTATGNK-------DVITGEHFRQM--KDGAILANAGHF 112 (162)
T ss_dssp EE-EE-SSSS-------SSB-HHHHHHS---TTEEEEESSSS
T ss_pred EE-EECCCCc-------cccCHHHHHHh--cCCeEEeccCcC
Confidence 33 3222221 22456888888 457899888864
No 119
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=82.67 E-value=9.8 Score=34.65 Aligned_cols=57 Identities=28% Similarity=0.332 Sum_probs=43.3
Q ss_pred cCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023801 15 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 15 ~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
...+.+|.+.+|...+|.-|.+++..|+.+|.+.+++. .+..+...++.+|+..++-
T Consensus 184 ~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~---~~~~~~~~~~~~g~~~~v~ 240 (398)
T TIGR01751 184 PATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVV---SSPEKAEYCRELGAEAVID 240 (398)
T ss_pred ccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEc---CCHHHHHHHHHcCCCEEec
Confidence 35567776666666779999999999999999865543 3456778888899876654
No 120
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=82.29 E-value=16 Score=33.32 Aligned_cols=54 Identities=20% Similarity=0.194 Sum_probs=46.5
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
+..+..+||-.+..+|+-+-..|=.-.|++|.-+.......+-..||+.+++|-
T Consensus 50 k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDi 103 (374)
T COG0399 50 KYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDI 103 (374)
T ss_pred CeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHcCCeEEEEec
Confidence 368888999999999988655776678999999999999999999999999984
No 121
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=82.00 E-value=18 Score=31.92 Aligned_cols=51 Identities=25% Similarity=0.273 Sum_probs=37.2
Q ss_pred CCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 17 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 17 ~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
.++++.+.+|...+|..|.+++..|+.+|++++++.. ++.+...++.+|++
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~ 212 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDV---GDEKLELAKELGAD 212 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHHcCCc
Confidence 5677767666777778999999999999997655533 33566666777754
No 122
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=81.93 E-value=22 Score=31.29 Aligned_cols=58 Identities=22% Similarity=0.365 Sum_probs=39.5
Q ss_pred HcCCCCCC--CcEEEeeCCchHHHHHHHHHHHCCC-eEEEEeCCCCCHHHHHHHHH-cCCEEEEe
Q 023801 14 AKGLITPG--ESVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPASMSLERRIILRA-FGAELVLT 74 (277)
Q Consensus 14 ~~g~l~~g--~~~vv~aSsGN~g~a~A~aa~~~Gl-~~~vvvp~~~~~~~~~~~~~-~Ga~v~~~ 74 (277)
+.+.+++| .+.+|...+|.-|.++...|+.+|. +++++.+ ++.+.+.++. +|++-++.
T Consensus 146 ~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~---s~~~~~~~~~~lGa~~vi~ 207 (345)
T cd08293 146 EKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG---SDEKCQLLKSELGFDAAIN 207 (345)
T ss_pred HhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHhcCCcEEEE
Confidence 45556665 5666666679999999999999998 5554422 4466677665 88865443
No 123
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=81.30 E-value=21 Score=31.48 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=37.3
Q ss_pred CCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023801 16 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 71 (277)
Q Consensus 16 g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v 71 (277)
-.+.++.+.+|.. +|.-|.+++..|+.+|.+.+++.+ ++.++..++.+|++-
T Consensus 159 ~~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~ 210 (333)
T cd08296 159 SGAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISR---GSDKADLARKLGAHH 210 (333)
T ss_pred cCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHcCCcE
Confidence 3567775555555 899999999999999998555433 345677778888743
No 124
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=81.26 E-value=12 Score=33.02 Aligned_cols=59 Identities=27% Similarity=0.371 Sum_probs=40.5
Q ss_pred HHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 12 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 12 a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
++++..+.+|.+.+|. .+|--|.+++..|+.+|.+-++++ ..++.|++.++.+|++.++
T Consensus 155 ~l~~~~~~~g~~vlV~-G~G~vG~~~~~~ak~~G~~~vi~~--~~~~~~~~~~~~~ga~~~i 213 (339)
T cd08239 155 ALRRVGVSGRDTVLVV-GAGPVGLGALMLARALGAEDVIGV--DPSPERLELAKALGADFVI 213 (339)
T ss_pred HHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHhCCCEEE
Confidence 3444556777665665 569999999999999999833333 2345677777888885443
No 125
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=81.20 E-value=12 Score=33.31 Aligned_cols=62 Identities=16% Similarity=0.210 Sum_probs=45.4
Q ss_pred HHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 12 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 12 a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
++.+-.+.||.. +.....|-.|.----+|+.+|++++++ ...+..|.+.++.+||+..+...
T Consensus 173 pLk~~g~~pG~~-vgI~GlGGLGh~aVq~AKAMG~rV~vi--s~~~~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 173 PLKRSGLGPGKW-VGIVGLGGLGHMAVQYAKAMGMRVTVI--STSSKKKEEAIKSLGADVFVDST 234 (360)
T ss_pred hhHHcCCCCCcE-EEEecCcccchHHHHHHHHhCcEEEEE--eCCchhHHHHHHhcCcceeEEec
Confidence 444445679965 444444448888888999999999988 33344788899999999988764
No 126
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=81.07 E-value=11 Score=33.38 Aligned_cols=57 Identities=18% Similarity=0.185 Sum_probs=41.0
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
.+...+++|.+.+|. .+|..|.++...|+.+|.+.++++. .++.|++.++.+|++-+
T Consensus 153 ~~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~Ga~~~ 209 (347)
T PRK10309 153 FHLAQGCEGKNVIII-GAGTIGLLAIQCAVALGAKSVTAID--INSEKLALAKSLGAMQT 209 (347)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEC--CCHHHHHHHHHcCCceE
Confidence 455667778665555 6799999999999999987554442 25567777788888543
No 127
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=80.78 E-value=19 Score=31.29 Aligned_cols=55 Identities=24% Similarity=0.234 Sum_probs=38.1
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
++...+.+|.+.+|...+|.-|.+++..|+.+|.+.+++... ..+...++.+|++
T Consensus 132 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~ 186 (324)
T cd08292 132 LDFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRR---DAGVAELRALGIG 186 (324)
T ss_pred HHhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecC---HHHHHHHHhcCCC
Confidence 344667788666666667999999999999999886665332 3445555556763
No 128
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=80.73 E-value=18 Score=32.07 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=40.8
Q ss_pred HHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 12 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 12 a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
++++....+|.+.+|. .+|.-|.+....++.+|.+.++++. .++.|++..+.+|++.++
T Consensus 161 al~~~~~~~g~~VlV~-G~G~vG~~aiqlak~~G~~~Vi~~~--~~~~~~~~a~~lGa~~vi 219 (343)
T PRK09880 161 AAHQAGDLQGKRVFVS-GVGPIGCLIVAAVKTLGAAEIVCAD--VSPRSLSLAREMGADKLV 219 (343)
T ss_pred HHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEEe--CCHHHHHHHHHcCCcEEe
Confidence 3344444567555554 5799999999999999986444433 346788888899997544
No 129
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.68 E-value=8.6 Score=34.15 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=51.1
Q ss_pred HHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 11 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 11 ~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
+|-+++.+++| .+++.-..|--|..+-.+|+.+|-+=+|++ +..+.+++..+.+||+++.-.
T Consensus 160 HAcr~~~vk~G-s~vLV~GAGPIGl~t~l~Aka~GA~~VVi~--d~~~~Rle~Ak~~Ga~~~~~~ 221 (354)
T KOG0024|consen 160 HACRRAGVKKG-SKVLVLGAGPIGLLTGLVAKAMGASDVVIT--DLVANRLELAKKFGATVTDPS 221 (354)
T ss_pred hhhhhcCcccC-CeEEEECCcHHHHHHHHHHHHcCCCcEEEe--ecCHHHHHHHHHhCCeEEeec
Confidence 56678889999 568899999999999999999998877664 345678888888999887665
No 130
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=80.63 E-value=26 Score=30.90 Aligned_cols=54 Identities=26% Similarity=0.428 Sum_probs=39.8
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
+...+.+|...+| ..+|..|.++...|+..|++.++.+... +.+...++.+|++
T Consensus 162 ~~~~~~~g~~vlI-~g~g~vg~~~~~lak~~G~~~v~~~~~~--~~~~~~~~~~ga~ 215 (345)
T cd08287 162 VSAGVRPGSTVVV-VGDGAVGLCAVLAAKRLGAERIIAMSRH--EDRQALAREFGAT 215 (345)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECCC--HHHHHHHHHcCCc
Confidence 3556777766556 5689999999999999999755554433 4667777888884
No 131
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=80.57 E-value=13 Score=34.66 Aligned_cols=50 Identities=8% Similarity=-0.143 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEe
Q 023801 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITM 52 (277)
Q Consensus 3 R~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvv 52 (277)
|+..+.+..+++.-.....+.+|+...+||-|..+|.....+|.+++.+.
T Consensus 218 ~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavS 267 (454)
T PTZ00079 218 YGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMS 267 (454)
T ss_pred HHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 56777777777644333333679999999999999999999998887554
No 132
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=80.49 E-value=14 Score=32.12 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=34.6
Q ss_pred CCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023801 20 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 71 (277)
Q Consensus 20 ~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v 71 (277)
++.+.+|...+|..|.+++..|+.+|.++++... ++.+...++.+|++-
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~ 194 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTG---KADAADYLKKLGAKE 194 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEec---CHHHHHHHHHcCCCE
Confidence 3445556666699999999999999998554432 345677777888743
No 133
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=80.15 E-value=17 Score=31.17 Aligned_cols=51 Identities=10% Similarity=-0.149 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeC
Q 023801 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 53 (277)
Q Consensus 3 R~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp 53 (277)
|+.++.++.+.+.-.....+.+|+....||-|..+|-....+|.+++.+..
T Consensus 19 ~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD 69 (254)
T cd05313 19 YGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD 69 (254)
T ss_pred HHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 677788888876544444346799999999999999999999988886654
No 134
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=79.86 E-value=12 Score=31.15 Aligned_cols=58 Identities=29% Similarity=0.312 Sum_probs=40.9
Q ss_pred HHHHHHcCCCCCCCcEEEee-CCc---hHHHHHHHHHHHCCCeEEEEeCCCCC-HHHHHHHHHcCC
Q 023801 9 ISDAEAKGLITPGESVLIEP-TSG---NTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGA 69 (277)
Q Consensus 9 v~~a~~~g~l~~g~~~vv~a-SsG---N~g~a~A~aa~~~Gl~~~vvvp~~~~-~~~~~~~~~~Ga 69 (277)
+-.|+..|.-. +.+|++ |.| .+.++||.+|++-|=..+.++|+..+ ..-.+.|..+|.
T Consensus 32 fISAlAAG~nA---kliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~ 94 (218)
T PF07279_consen 32 FISALAAGWNA---KLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL 94 (218)
T ss_pred HHHHHhccccc---eEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc
Confidence 34567777633 345555 555 37899999999999999999998765 344556666664
No 135
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=79.55 E-value=12 Score=32.60 Aligned_cols=56 Identities=23% Similarity=0.316 Sum_probs=40.8
Q ss_pred HHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023801 12 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 71 (277)
Q Consensus 12 a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v 71 (277)
+.+.+.+.+|.+.+|. .+|-.|.+++..|+.+|.+.+++ ..++.+...++.+|+..
T Consensus 147 ~~~~~~~~~g~~vlV~-g~g~vg~~~~q~a~~~G~~vi~~---~~~~~~~~~~~~~g~~~ 202 (319)
T cd08242 147 ILEQVPITPGDKVAVL-GDGKLGLLIAQVLALTGPDVVLV---GRHSEKLALARRLGVET 202 (319)
T ss_pred HHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEE---cCCHHHHHHHHHcCCcE
Confidence 3456778888666666 57999999999999999994443 22356777777788764
No 136
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=78.67 E-value=17 Score=32.69 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=41.0
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
+.+.+++|.+.+|. .+|.-|.+++..|+.+|.+.++.+ ..++.|++.++.+|++.++
T Consensus 179 ~~~~~~~g~~VlV~-G~G~iG~~a~q~Ak~~G~~~Vi~~--~~~~~~~~~a~~~Ga~~~i 235 (368)
T TIGR02818 179 NTAKVEEGDTVAVF-GLGGIGLSVIQGARMAKASRIIAI--DINPAKFELAKKLGATDCV 235 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHhCCCeEE
Confidence 45677888665555 579999999999999998433333 3355778888889985433
No 137
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=78.48 E-value=11 Score=29.72 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=36.2
Q ss_pred chHHHHHHHHHHHCCCeEEEEeCCC--CCH--HHH----HHHHHcCCEEEEeC
Q 023801 31 GNTGIGLAFMAAAKQYRLIITMPAS--MSL--ERR----IILRAFGAELVLTD 75 (277)
Q Consensus 31 GN~g~a~A~aa~~~Gl~~~vvvp~~--~~~--~~~----~~~~~~Ga~v~~~~ 75 (277)
+|.++|++..++++|+.++++.|++ .++ ..+ +..+..|.++.+++
T Consensus 13 ~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 65 (158)
T PF00185_consen 13 NRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD 65 (158)
T ss_dssp SHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES
T ss_pred ChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 8999999999999999999999998 555 223 33455689998885
No 138
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=78.14 E-value=20 Score=31.19 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=38.1
Q ss_pred CCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 20 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 20 ~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
+|.+.+|...+|..|.+++..|+.+|.+++++. .++.|.+.++.+|++-++
T Consensus 146 ~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~---~~~~~~~~~~~~g~~~~~ 196 (324)
T cd08288 146 GDGPVLVTGAAGGVGSVAVALLARLGYEVVAST---GRPEEADYLRSLGASEII 196 (324)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEe---CCHHHHHHHHhcCCCEEE
Confidence 454556666679999999999999999866553 244778888889985433
No 139
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=77.64 E-value=42 Score=28.85 Aligned_cols=55 Identities=27% Similarity=0.346 Sum_probs=38.0
Q ss_pred HHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCe-EEEEeCCCCCHHHHHHHHHcCCE
Q 023801 12 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYR-LIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 12 a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~-~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
+++...+++|.+.+|. .+|-.|.+++..|+.+|.+ .+++ .. .+.+...++.+|++
T Consensus 121 ~~~~~~~~~~~~vlI~-g~g~vg~~~~~la~~~g~~~v~~~-~~--~~~~~~~~~~~g~~ 176 (312)
T cd08269 121 VFRRGWIRAGKTVAVI-GAGFIGLLFLQLAAAAGARRVIAI-DR--RPARLALARELGAT 176 (312)
T ss_pred HHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEE-CC--CHHHHHHHHHhCCc
Confidence 3346667788666666 4688999999999999988 4443 22 34566677777763
No 140
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=77.41 E-value=21 Score=31.58 Aligned_cols=61 Identities=20% Similarity=0.232 Sum_probs=48.4
Q ss_pred HHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHH-cCCEEEEeC
Q 023801 12 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA-FGAELVLTD 75 (277)
Q Consensus 12 a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~-~Ga~v~~~~ 75 (277)
+++-|..++|.+.+|.+-+|-.|.-+--.|+..|.+++-+.- .++|.+.++. +|-+..+--
T Consensus 142 Ll~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaG---g~eK~~~l~~~lGfD~~idy 203 (340)
T COG2130 142 LLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAG---GAEKCDFLTEELGFDAGIDY 203 (340)
T ss_pred HHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecC---CHHHHHHHHHhcCCceeeec
Confidence 356788999988899999999999999999988988877643 4588888877 777665543
No 141
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=77.33 E-value=66 Score=30.38 Aligned_cols=124 Identities=15% Similarity=0.143 Sum_probs=72.6
Q ss_pred HHHHHHHHCCCeEEEEe-----------CCCCCHHHHHHHHHcCCEEEEeCCCC---Ch-HHHHHHHHHHHHhCCCeE--
Q 023801 36 GLAFMAAAKQYRLIITM-----------PASMSLERRIILRAFGAELVLTDPAK---GM-KGAVQKAEEILAKTPNAY-- 98 (277)
Q Consensus 36 a~A~aa~~~Gl~~~vvv-----------p~~~~~~~~~~~~~~Ga~v~~~~~~~---~~-~~~~~~a~~~~~~~~~~~-- 98 (277)
-+..+|+.+|+++.+.. |..+....+......|++.+....+. .| -++.+...+.+++-...+
T Consensus 261 ~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~ 340 (473)
T TIGR01064 261 KMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAY 340 (473)
T ss_pred HHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccch
Confidence 35678899999988764 33445566777778899998886421 23 244444443333211111
Q ss_pred ---ecCCCC-CC--cchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEEecCCC
Q 023801 99 ---MLQQFE-NP--ANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTES 165 (277)
Q Consensus 99 ---~~~~~~-~~--~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~ 165 (277)
|-.+.. .. ..........+.++.+.+ +.++||+.+-+|.++--+++. .|..+|+++.+...
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~--~akaIVv~T~SG~TA~~vSr~----rp~~PIiAvT~~~~ 407 (473)
T TIGR01064 341 LTNFNDRKNSDPKPSTITEAIALSAVEAAEKL--DAKAIVVLTESGRTARLLSKY----RPNAPIIAVTPNER 407 (473)
T ss_pred hhhhhhhhcccccCCChHHHHHHHHHHHHhhc--CCCEEEEEcCChHHHHHHHhh----CCCCCEEEEcCCHH
Confidence 111100 00 011123333445666665 578999999999987666554 68899999986543
No 142
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=77.30 E-value=20 Score=32.08 Aligned_cols=58 Identities=19% Similarity=0.159 Sum_probs=40.6
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
.+...+++|.+.+|. .+|.-|.+++..|+.+|...++++.. .+.+++.++.+|++.++
T Consensus 180 ~~~~~~~~g~~VlV~-G~g~vG~~a~q~ak~~G~~~vi~~~~--~~~~~~~~~~~Ga~~~i 237 (369)
T cd08301 180 WNVAKVKKGSTVAIF-GLGAVGLAVAEGARIRGASRIIGVDL--NPSKFEQAKKFGVTEFV 237 (369)
T ss_pred HhhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCceEE
Confidence 344667888665555 57999999999999999843333322 34678888899986444
No 143
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=77.24 E-value=19 Score=32.36 Aligned_cols=57 Identities=19% Similarity=0.203 Sum_probs=41.0
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
.+.+.+++|.+.+|. .+|.-|.+++..|+.+|.+.++++.. .+.|++.++.+|++-+
T Consensus 177 ~~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~~~~~ga~~~ 233 (365)
T cd08277 177 WNTAKVEPGSTVAVF-GLGAVGLSAIMGAKIAGASRIIGVDI--NEDKFEKAKEFGATDF 233 (365)
T ss_pred HhhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCCcE
Confidence 355678888665555 67999999999999999853333322 4577888888998533
No 144
>PLN02740 Alcohol dehydrogenase-like
Probab=77.23 E-value=17 Score=32.97 Aligned_cols=57 Identities=23% Similarity=0.213 Sum_probs=40.3
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
+...+++|.+.+|. ..|.-|.+++..|+.+|.+-++.+ +.++.|++..+.+|++.++
T Consensus 192 ~~~~~~~g~~VlV~-G~G~vG~~a~q~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i 248 (381)
T PLN02740 192 NTANVQAGSSVAIF-GLGAVGLAVAEGARARGASKIIGV--DINPEKFEKGKEMGITDFI 248 (381)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCCcEEEE--cCChHHHHHHHHcCCcEEE
Confidence 45677888654444 579999999999999998533333 2345778888888986533
No 145
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=77.12 E-value=16 Score=32.82 Aligned_cols=57 Identities=21% Similarity=0.311 Sum_probs=40.6
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
+...+++|.+.+|. .+|.-|.+++..|+.+|.+.++++ ..++.|++.++.+|++.++
T Consensus 180 ~~~~~~~g~~VlV~-G~G~vG~~a~~~ak~~G~~~vi~~--~~~~~~~~~~~~lGa~~~i 236 (368)
T cd08300 180 NTAKVEPGSTVAVF-GLGAVGLAVIQGAKAAGASRIIGI--DINPDKFELAKKFGATDCV 236 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEE--eCCHHHHHHHHHcCCCEEE
Confidence 45667888665555 579999999999999998534433 2245677788889986443
No 146
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=76.58 E-value=13 Score=34.38 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=41.5
Q ss_pred CCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 16 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 16 g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
+.+.+| ++|+....|.-|+.+|..++.+|.+++++ +.++.+....+.+|++++
T Consensus 197 ~~~l~G-ktVvViG~G~IG~~va~~ak~~Ga~ViV~---d~d~~R~~~A~~~G~~~~ 249 (413)
T cd00401 197 DVMIAG-KVAVVAGYGDVGKGCAQSLRGQGARVIVT---EVDPICALQAAMEGYEVM 249 (413)
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHCCCEEEEE---ECChhhHHHHHhcCCEEc
Confidence 444566 56999999999999999999999975553 334567778888999654
No 147
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=75.65 E-value=17 Score=30.39 Aligned_cols=52 Identities=15% Similarity=-0.031 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCC
Q 023801 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 54 (277)
Q Consensus 3 R~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~ 54 (277)
|+.+..++.+.+.-.......+|+....||-|+.+|-...+.|.+.+.+...
T Consensus 4 ~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~ 55 (217)
T cd05211 4 YGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDP 55 (217)
T ss_pred hHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 6777888887765433333467999999999999999999999888877654
No 148
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=75.45 E-value=43 Score=29.08 Aligned_cols=55 Identities=20% Similarity=0.310 Sum_probs=39.1
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
..+.+.++.+.+|. .+|..|.+++..|+..|++++ ++.......+...++.+|++
T Consensus 158 ~~~~~~~g~~vlI~-g~g~~g~~~~~la~~~G~~v~-~~~~~~~~~~~~~~~~~g~~ 212 (306)
T cd08258 158 ERSGIRPGDTVVVF-GPGPIGLLAAQVAKLQGATVV-VVGTEKDEVRLDVAKELGAD 212 (306)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCEEE-EECCCCCHHHHHHHHHhCCc
Confidence 34566777666665 479999999999999998854 33233346677777888873
No 149
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=75.37 E-value=48 Score=28.86 Aligned_cols=55 Identities=25% Similarity=0.207 Sum_probs=39.2
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 71 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v 71 (277)
+.+.+.+|.+.+|...+|..|.+++..|+.+|++.+.+.+ .+.+...++.+|++-
T Consensus 134 ~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~---~~~~~~~~~~~g~~~ 188 (327)
T PRK10754 134 KTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---SAQKAQRAKKAGAWQ 188 (327)
T ss_pred hhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHCCCCE
Confidence 3466778866555557899999999999999998655532 345666667788743
No 150
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=75.33 E-value=33 Score=29.97 Aligned_cols=49 Identities=22% Similarity=0.305 Sum_probs=33.9
Q ss_pred cEEEe-eCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023801 23 SVLIE-PTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 23 ~~vv~-aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
+.++. ..+|..|.++...|+.+|.+.+++. .++.|.+.++.+|++-++.
T Consensus 145 ~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~---~~~~~~~~~~~~g~~~~i~ 194 (324)
T cd08291 145 KAVVHTAAASALGRMLVRLCKADGIKVINIV---RRKEQVDLLKKIGAEYVLN 194 (324)
T ss_pred cEEEEccCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCcEEEE
Confidence 44554 5778888888888999998754442 2456777777788865443
No 151
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=75.27 E-value=15 Score=34.95 Aligned_cols=53 Identities=17% Similarity=0.134 Sum_probs=42.8
Q ss_pred CCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 19 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 19 ~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
.|+ .+|+.-..|.-|.+.+..|+.+|-.++++ +..+.++++.+.+|++.+.++
T Consensus 163 ~pg-~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~---D~~~~rle~aeslGA~~v~i~ 215 (509)
T PRK09424 163 VPP-AKVLVIGAGVAGLAAIGAAGSLGAIVRAF---DTRPEVAEQVESMGAEFLELD 215 (509)
T ss_pred cCC-CEEEEECCcHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCeEEEec
Confidence 345 46999999999999999999999864443 457788999999999976554
No 152
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=75.21 E-value=43 Score=29.07 Aligned_cols=56 Identities=27% Similarity=0.309 Sum_probs=41.2
Q ss_pred cCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 15 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 15 ~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
.+.+.+|.+.+|...+|..|.+++..|+.+|.+.+++. .++.+...++.+|++.++
T Consensus 135 ~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~---~~~~~~~~~~~~g~~~~~ 190 (334)
T PTZ00354 135 HGDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITT---SSEEKVDFCKKLAAIILI 190 (334)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCcEEE
Confidence 36677886766766789999999999999999865543 244666666778885433
No 153
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=75.04 E-value=22 Score=31.34 Aligned_cols=53 Identities=23% Similarity=0.276 Sum_probs=37.9
Q ss_pred CCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023801 16 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 71 (277)
Q Consensus 16 g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v 71 (277)
..+.+|.+.+|. .+|..|.+++..|+.+|+..++++ ..++.+...++.+|+.+
T Consensus 163 ~~~~~~~~vlI~-g~g~vg~~~~~~a~~~g~~~v~~~--~~~~~~~~~~~~~g~~~ 215 (344)
T cd08284 163 AQVRPGDTVAVI-GCGPVGLCAVLSAQVLGAARVFAV--DPVPERLERAAALGAEP 215 (344)
T ss_pred cCCccCCEEEEE-CCcHHHHHHHHHHHHcCCceEEEE--cCCHHHHHHHHHhCCeE
Confidence 456677666666 589999999999999998434444 33457777778888753
No 154
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=74.76 E-value=7.4 Score=30.56 Aligned_cols=42 Identities=17% Similarity=0.079 Sum_probs=33.2
Q ss_pred EEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCC
Q 023801 25 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA 69 (277)
Q Consensus 25 vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga 69 (277)
|..-.+||+|.|+|...+..|.+++++.++. ...+.++..+-
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~---~~~~~i~~~~~ 43 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE---EQIEEINETRQ 43 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH---HHHHHHHHHTS
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH---HHHHHHHHhCC
Confidence 6778999999999999999999999987654 55555554443
No 155
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=74.52 E-value=23 Score=32.08 Aligned_cols=56 Identities=32% Similarity=0.352 Sum_probs=42.6
Q ss_pred CCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023801 16 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 16 g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
..+.+|.+.+|...+|..|.+++..|+.+|.+.+++. .++.+...++.+|++.++-
T Consensus 189 ~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~---~s~~~~~~~~~~G~~~~i~ 244 (393)
T cd08246 189 NTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVV---SSEEKAEYCRALGAEGVIN 244 (393)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEe---CCHHHHHHHHHcCCCEEEc
Confidence 4567776656666679999999999999999976553 3567888888899865543
No 156
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=74.50 E-value=23 Score=31.20 Aligned_cols=51 Identities=29% Similarity=0.311 Sum_probs=36.5
Q ss_pred CCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 19 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 19 ~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
.+|.+.+|. .+|..|.++...|+.+|.+.++++ ..++.|...++.+|++.+
T Consensus 162 ~~g~~vlV~-~~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~lg~~~~ 212 (341)
T PRK05396 162 LVGEDVLIT-GAGPIGIMAAAVAKHVGARHVVIT--DVNEYRLELARKMGATRA 212 (341)
T ss_pred CCCCeEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHhCCcEE
Confidence 456565664 478999999999999998644444 345677788888888543
No 157
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=74.22 E-value=56 Score=31.16 Aligned_cols=51 Identities=16% Similarity=0.098 Sum_probs=41.1
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
.+++.-..|..|++.+..++.+|..++++ +....+++..+.+|++.+.++.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~---d~~~~rle~a~~lGa~~v~v~~ 215 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAF---DTRPEVKEQVQSMGAEFLELDF 215 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCeEEeccc
Confidence 35778889999999999999999875554 3345678888999999977763
No 158
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=74.13 E-value=58 Score=28.18 Aligned_cols=43 Identities=16% Similarity=0.184 Sum_probs=27.6
Q ss_pred hHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcC----CCcEEEEEe
Q 023801 116 TGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN----PNIKLYGIE 161 (277)
Q Consensus 116 ~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~----~~~~vigV~ 161 (277)
...+++++. +++|.|+|. +...+.|+..++++.+ .++.|+|.+
T Consensus 192 ~~~~~l~~~-~~~~ai~~~--~d~~A~g~~~al~~~g~~vp~di~vig~D 238 (305)
T cd06324 192 QAENLLKRY-PDVRLIWAA--NDQMAFGALRAAKEAGRKPGRDVLFGGVN 238 (305)
T ss_pred HHHHHHHHC-CCccEEEEC--CchHHHHHHHHHHHcCCCcCCCEEEEecC
Confidence 344455443 468888864 5556678888888865 246676665
No 159
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=73.79 E-value=66 Score=28.67 Aligned_cols=43 Identities=14% Similarity=0.294 Sum_probs=29.0
Q ss_pred hHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCC-CcEEEEEe
Q 023801 116 TGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNP-NIKLYGIE 161 (277)
Q Consensus 116 ~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~-~~~vigV~ 161 (277)
...++++.- +++|.|+++ +...+.|++.++++.+. +++|+|+.
T Consensus 199 ~~~~lL~~~-pdi~aI~~~--~~~~~~Ga~~Al~~~g~~~v~VvG~D 242 (336)
T PRK15408 199 TAEGILKAY-PDLDAIIAP--DANALPAAAQAAENLKRDKVAIVGFS 242 (336)
T ss_pred HHHHHHHHC-CCCcEEEEC--CCccHHHHHHHHHhCCCCCEEEEEeC
Confidence 445555553 678999987 33444578888887653 57777775
No 160
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=73.46 E-value=25 Score=30.73 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=39.1
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
++.+.++++.+.+|. .+|..|.+++..++..|++.+++.+. ..+...++.+|++
T Consensus 160 ~~~~~~~~~~~vlV~-g~g~vg~~~~~la~~~g~~v~~~~~~---~~~~~~~~~~g~~ 213 (329)
T cd08298 160 LKLAGLKPGQRLGLY-GFGASAHLALQIARYQGAEVFAFTRS---GEHQELARELGAD 213 (329)
T ss_pred HHhhCCCCCCEEEEE-CCcHHHHHHHHHHHHCCCeEEEEcCC---hHHHHHHHHhCCc
Confidence 356677888665554 57899999999999999876655443 2566666778874
No 161
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=73.41 E-value=31 Score=30.38 Aligned_cols=52 Identities=23% Similarity=0.204 Sum_probs=36.1
Q ss_pred CCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023801 17 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 71 (277)
Q Consensus 17 ~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v 71 (277)
.+.+|.+.+|.+ +|-.|.+++..|+.+|.+.++++ ..++.+...++.+|++.
T Consensus 158 ~~~~g~~vlI~~-~g~vg~~a~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~ 209 (340)
T TIGR00692 158 GPISGKSVLVTG-AGPIGLMAIAVAKASGAYPVIVS--DPNEYRLELAKKMGATY 209 (340)
T ss_pred cCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCcE
Confidence 345666666654 68888888888988998744444 33567777777788743
No 162
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=73.28 E-value=43 Score=28.07 Aligned_cols=72 Identities=22% Similarity=0.254 Sum_probs=44.5
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC-CCChHHHHHHHHHHHHhC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP-AKGMKGAVQKAEEILAKT 94 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~~~~~~ 94 (277)
+.+|+..+|.-|.++|......|.+++++-...........++..|.++..+.. -.+.++..+...+..++.
T Consensus 10 ~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK12823 10 VVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAF 82 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 678999999999999999999999877664432112233445566777654431 123344444444444443
No 163
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=73.02 E-value=71 Score=28.68 Aligned_cols=51 Identities=20% Similarity=0.235 Sum_probs=41.9
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHH-cCCEEEEeCC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA-FGAELVLTDP 76 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~-~Ga~v~~~~~ 76 (277)
+++...+|.-|...+..++.+|...++++ +.++.|+++.+. .|++++....
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~--d~~~~Rl~~A~~~~g~~~~~~~~ 222 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV--DRSPERLELAKEAGGADVVVNPS 222 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHhCCCeEeecCc
Confidence 69999999999999999999999988887 446678888877 6777666653
No 164
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=72.67 E-value=69 Score=28.44 Aligned_cols=53 Identities=28% Similarity=0.422 Sum_probs=37.0
Q ss_pred cCCCCCCCcEEEeeCCchHHHHHHHHHHHCCC-eEEEEeCCCCCHHHHHHHHHcCCEE
Q 023801 15 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPASMSLERRIILRAFGAEL 71 (277)
Q Consensus 15 ~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl-~~~vvvp~~~~~~~~~~~~~~Ga~v 71 (277)
.+.+.+|.+.+|. .+|..|.+++..|+.+|+ +++++ ..++.+...++.+|++-
T Consensus 172 ~~~~~~g~~vlI~-g~g~vG~~~~~lak~~G~~~v~~~---~~~~~~~~~~~~~g~~~ 225 (361)
T cd08231 172 AGPVGAGDTVVVQ-GAGPLGLYAVAAAKLAGARRVIVI---DGSPERLELAREFGADA 225 (361)
T ss_pred ccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEE---cCCHHHHHHHHHcCCCe
Confidence 3444567666666 579999999999999999 54444 22456677777888743
No 165
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=72.57 E-value=77 Score=29.16 Aligned_cols=48 Identities=21% Similarity=0.185 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHcCCCCCC-CcEEEeeCCchHHHH--HHHHHHHCCCeEEEEe
Q 023801 4 IGYSMISDAEAKGLITPG-ESVLIEPTSGNTGIG--LAFMAAAKQYRLIITM 52 (277)
Q Consensus 4 ~a~~~v~~a~~~g~l~~g-~~~vv~aSsGN~g~a--~A~aa~~~Gl~~~vvv 52 (277)
-...++...+.+|.+..| +..||+..|+..|+| +|.+. ..|.+.+++-
T Consensus 23 ~v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~ 73 (398)
T PRK13656 23 NVKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVF 73 (398)
T ss_pred HHHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEe
Confidence 355677888888888555 456667777777777 55566 6788766664
No 166
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=71.88 E-value=61 Score=27.45 Aligned_cols=55 Identities=24% Similarity=0.339 Sum_probs=39.6
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
++.+.+++|.+.++...+|..|.++...++.+|++.+++.+. ..+...++.+|++
T Consensus 113 l~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 167 (303)
T cd08251 113 FARAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASS---DDKLEYLKQLGVP 167 (303)
T ss_pred HHhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCC---HHHHHHHHHcCCC
Confidence 346778888666666778999999999999999885555333 3566666777764
No 167
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=71.77 E-value=21 Score=31.41 Aligned_cols=61 Identities=20% Similarity=0.187 Sum_probs=43.6
Q ss_pred cCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCH--HHHHH----HHHcCCEEEEeCC
Q 023801 15 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRII----LRAFGAELVLTDP 76 (277)
Q Consensus 15 ~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~--~~~~~----~~~~Ga~v~~~~~ 76 (277)
.|.|+ |.+.+.+.-..|-+.|+-.+|+++|+++++..|+...+ .-+.. .+..|+++.++..
T Consensus 148 ~g~l~-g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d 214 (310)
T COG0078 148 FGSLK-GLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTED 214 (310)
T ss_pred cCccc-CcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecC
Confidence 45443 44545555668899999999999999999999997643 22222 2445999999874
No 168
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=71.72 E-value=69 Score=28.18 Aligned_cols=75 Identities=20% Similarity=0.159 Sum_probs=53.9
Q ss_pred CCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEe-CCCCCHHHHHHHHHcC-CEEEEeCCCCChHHHHHHHHHHHHhCC
Q 023801 20 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITM-PASMSLERRIILRAFG-AELVLTDPAKGMKGAVQKAEEILAKTP 95 (277)
Q Consensus 20 ~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvv-p~~~~~~~~~~~~~~G-a~v~~~~~~~~~~~~~~~a~~~~~~~~ 95 (277)
.|+..+||.+++--|+++|.--++.|-+.+++- -.....+....++..| +.-..+|- .++++..+.+++..++.+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdi-s~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDI-SDREEIYRLAKKVKKEVG 113 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecC-CCHHHHHHHHHHHHHhcC
Confidence 344678999999999999999999998655442 2344556777777777 33445554 367788888888888774
No 169
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=71.69 E-value=32 Score=30.03 Aligned_cols=56 Identities=25% Similarity=0.286 Sum_probs=39.0
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
++..+.++.+.+|. ..|.-|++++..++.+|++++++.+ +..++..++.+|++.++
T Consensus 156 ~~~~~~~~~~vlI~-g~g~iG~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~ 211 (330)
T cd08245 156 RDAGPRPGERVAVL-GIGGLGHLAVQYARAMGFETVAITR---SPDKRELARKLGADEVV 211 (330)
T ss_pred HhhCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHhCCcEEe
Confidence 34567777666666 5677999999999999998665533 34566667777865443
No 170
>PRK08703 short chain dehydrogenase; Provisional
Probab=71.42 E-value=54 Score=27.05 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=25.5
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEe
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITM 52 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvv 52 (277)
.+.+|+..+|.-|.++|......|.+++++-
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~~~~ 37 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVILVA 37 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEe
Confidence 3678999999999999998888888765553
No 171
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=71.40 E-value=54 Score=28.96 Aligned_cols=52 Identities=17% Similarity=0.137 Sum_probs=35.4
Q ss_pred CCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 16 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 16 g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
+.+.++.+ |+...+|..|.+++..|+.+|.+.++++. .+..+...++.+|++
T Consensus 171 ~~~~~~~~-vlI~g~g~vg~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~g~~ 222 (350)
T cd08240 171 MPLVADEP-VVIIGAGGLGLMALALLKALGPANIIVVD--IDEAKLEAAKAAGAD 222 (350)
T ss_pred ccCCCCCE-EEEECCcHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHhCCc
Confidence 34445544 44446799999999999999996554443 245677777777764
No 172
>PRK07550 hypothetical protein; Provisional
Probab=71.19 E-value=78 Score=28.54 Aligned_cols=53 Identities=11% Similarity=0.082 Sum_probs=36.9
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
..|+..++++++..++..+- .+-.-.|++|.-........++.+|++++.++.
T Consensus 91 ~~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 143 (386)
T PRK07550 91 EQVHITSGCNQAFWAAMVTL-AGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPC 143 (386)
T ss_pred ceEEEecCcHHHHHHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCCEEEEEec
Confidence 35777777788887776553 333456777765555556677899999999874
No 173
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=71.13 E-value=26 Score=29.22 Aligned_cols=64 Identities=17% Similarity=0.198 Sum_probs=38.5
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHh
Q 023801 29 TSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAK 93 (277)
Q Consensus 29 SsGN~g~a~A~aa~~~Gl~~~vvvp~~~~--~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~ 93 (277)
+++.-|+++|..-.+.|.++++.-..... .......+.+|.+++.+|-. +.+...+...+..++
T Consensus 4 ~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~-~~~~v~~~~~~~~~~ 69 (241)
T PF13561_consen 4 SSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLS-DEESVEALFDEAVER 69 (241)
T ss_dssp STSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTT-SHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCc-chHHHHHHHHHHHhh
Confidence 56778899999988999887776444321 11234445678888777653 333333334444444
No 174
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=70.86 E-value=65 Score=28.23 Aligned_cols=52 Identities=31% Similarity=0.462 Sum_probs=36.3
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCC
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA 69 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga 69 (277)
+...+.+|.+.+|. .+|-.|.+++..|+.+|++++++.. ++.+...++.+|+
T Consensus 153 ~~~~l~~g~~vLI~-g~g~vG~~a~~lA~~~g~~v~~~~~---s~~~~~~~~~~g~ 204 (337)
T cd08261 153 RRAGVTAGDTVLVV-GAGPIGLGVIQVAKARGARVIVVDI---DDERLEFARELGA 204 (337)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEECC---CHHHHHHHHHhCC
Confidence 45667777666666 4678889999999999988655532 3556666666664
No 175
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=70.72 E-value=63 Score=27.13 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=25.1
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEe
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITM 52 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvv 52 (277)
+.+|+.++|.-|+++|....+.|.++++.-
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~ 31 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISS 31 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEe
Confidence 458999999999999999999998866553
No 176
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=70.47 E-value=66 Score=27.94 Aligned_cols=53 Identities=28% Similarity=0.391 Sum_probs=38.2
Q ss_pred cCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 15 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 15 ~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
.+.+.+|.+.+|...+|-.|.+++..++.+|.+++++.. ++.+...++.+|++
T Consensus 134 ~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~ 186 (329)
T cd08250 134 VGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCS---SDEKAEFLKSLGCD 186 (329)
T ss_pred hcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeC---cHHHHHHHHHcCCc
Confidence 356778877777777899999999999999988555432 33555666677763
No 177
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=70.39 E-value=90 Score=29.50 Aligned_cols=93 Identities=16% Similarity=0.176 Sum_probs=58.4
Q ss_pred CCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeE
Q 023801 19 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAY 98 (277)
Q Consensus 19 ~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (277)
-.| ++++....|+-|+.+|..++.+|.+++++-+. +.+.......|+++.. +++ +.++- +.+
T Consensus 252 LaG-KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~d---p~~a~~A~~~G~~~~~------lee-------ll~~A-DIV 313 (476)
T PTZ00075 252 IAG-KTVVVCGYGDVGKGCAQALRGFGARVVVTEID---PICALQAAMEGYQVVT------LED-------VVETA-DIF 313 (476)
T ss_pred cCC-CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC---chhHHHHHhcCceecc------HHH-------HHhcC-CEE
Confidence 344 57999999999999999999999985554222 2233223346776431 222 22332 555
Q ss_pred ecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCch
Q 023801 99 MLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGG 139 (277)
Q Consensus 99 ~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg 139 (277)
..... + ...+..|.++++ ++..+++-+|.+-
T Consensus 314 I~atG-t-------~~iI~~e~~~~M--KpGAiLINvGr~d 344 (476)
T PTZ00075 314 VTATG-N-------KDIITLEHMRRM--KNNAIVGNIGHFD 344 (476)
T ss_pred EECCC-c-------ccccCHHHHhcc--CCCcEEEEcCCCc
Confidence 54421 1 234556778887 5789999999985
No 178
>PRK10083 putative oxidoreductase; Provisional
Probab=70.36 E-value=52 Score=28.81 Aligned_cols=59 Identities=19% Similarity=0.227 Sum_probs=41.8
Q ss_pred HHHcCCCCCCCcEEEeeCCchHHHHHHHHHHH-CCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 12 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAA-KQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 12 a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~-~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
+.+...+.+|.+.+|.. +|--|.+++..|+. +|.+.++.+.. ++.|..+++.+|++-++
T Consensus 152 ~~~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~i 211 (339)
T PRK10083 152 VTGRTGPTEQDVALIYG-AGPVGLTIVQVLKGVYNVKAVIVADR--IDERLALAKESGADWVI 211 (339)
T ss_pred HHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHhCCcEEe
Confidence 44566778886655544 78888888888886 59876665433 56788888889985443
No 179
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=69.95 E-value=68 Score=29.33 Aligned_cols=112 Identities=13% Similarity=0.159 Sum_probs=65.4
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHh
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAK 93 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~ 93 (277)
+.|..-.| ++|-.-..||-|..+|..++.+|+++.++=|..... +....+ .+. .++.++
T Consensus 109 ~~g~~L~g-ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~---------~~~~~~----~~L-------~ell~~ 167 (378)
T PRK15438 109 RDGFSLHD-RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR---------GDEGDF----RSL-------DELVQE 167 (378)
T ss_pred cCCCCcCC-CEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc---------cccccc----CCH-------HHHHhh
Confidence 34443344 568888999999999999999999998885432110 111000 111 233333
Q ss_pred CCCeEec-CCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHH--HHHHHHhh
Q 023801 94 TPNAYML-QQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTIT--GAGKFLKE 150 (277)
Q Consensus 94 ~~~~~~~-~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~a--Gi~~~~~~ 150 (277)
- +...+ .|...... ..-+.-+..|.+++| +++.+++-+|-|+.+- .+..+++.
T Consensus 168 s-DiI~lh~PLt~~g~-~~T~~li~~~~l~~m--k~gailIN~aRG~vVDe~AL~~aL~~ 223 (378)
T PRK15438 168 A-DILTFHTPLFKDGP-YKTLHLADEKLIRSL--KPGAILINACRGAVVDNTALLTCLNE 223 (378)
T ss_pred C-CEEEEeCCCCCCcc-cccccccCHHHHhcC--CCCcEEEECCCchhcCHHHHHHHHHh
Confidence 3 44433 33322111 122445667888888 5789999999998864 34444543
No 180
>PLN02702 L-idonate 5-dehydrogenase
Probab=69.92 E-value=32 Score=30.74 Aligned_cols=58 Identities=22% Similarity=0.284 Sum_probs=41.6
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
++...+.+|.+.+|. .+|.-|.++...++.+|.+.++.+.. ++.|...++.+|++...
T Consensus 174 ~~~~~~~~g~~vlI~-g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~~~ 231 (364)
T PLN02702 174 CRRANIGPETNVLVM-GAGPIGLVTMLAARAFGAPRIVIVDV--DDERLSVAKQLGADEIV 231 (364)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCCCEEE
Confidence 345566777665555 57899999999999999886555443 46777778888886544
No 181
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=69.30 E-value=84 Score=28.02 Aligned_cols=86 Identities=14% Similarity=0.231 Sum_probs=54.7
Q ss_pred cEEEeeCCchHHHHHHHHHHHC-CCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh-HHHHHHHHHHHHhCCCeEec
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAK-QYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM-KGAVQKAEEILAKTPNAYML 100 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~-Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~ 100 (277)
.+++.+.||..|.-.|+.=-.. |=++.++.-..-...-.+..+.||++|..++...+- -.-......+++..++.+++
T Consensus 69 ~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv 148 (385)
T KOG2862|consen 69 QTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFV 148 (385)
T ss_pred ceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEE
Confidence 4789999998887766654444 333334433333555577889999999999642110 11234556676767788888
Q ss_pred CCCCCCcc
Q 023801 101 QQFENPAN 108 (277)
Q Consensus 101 ~~~~~~~~ 108 (277)
.+.++...
T Consensus 149 ~hgdsSTg 156 (385)
T KOG2862|consen 149 THGDSSTG 156 (385)
T ss_pred EecCcccc
Confidence 88776443
No 182
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=69.24 E-value=40 Score=29.25 Aligned_cols=55 Identities=20% Similarity=0.321 Sum_probs=38.5
Q ss_pred HHcCCCCCCC-cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 13 EAKGLITPGE-SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 13 ~~~g~l~~g~-~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
+++..+.+|. +.+|...+|..|.+++..|+.+|.+.+++... +.+...++.+|++
T Consensus 137 ~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~---~~~~~~~~~~g~~ 192 (323)
T TIGR02823 137 LERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGK---AEEEDYLKELGAS 192 (323)
T ss_pred hhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHhcCCc
Confidence 3444467776 66666667999999999999999886554332 3455666778874
No 183
>PRK06348 aspartate aminotransferase; Provisional
Probab=69.14 E-value=42 Score=30.34 Aligned_cols=51 Identities=8% Similarity=0.098 Sum_probs=35.7
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
.|+..+++.++..++..+-. +-.-.|++|.-.-..-...++.+|++++.++
T Consensus 91 ~i~it~G~~~al~~~~~~~~-~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~ 141 (384)
T PRK06348 91 EIMATVGACHGMYLALQSIL-DPGDEVIIHEPYFTPYKDQIEMVGGKPIILE 141 (384)
T ss_pred hEEEcCChHHHHHHHHHHhc-CCCCEEEEeCCCCcchHHHHHHcCCEEEEec
Confidence 58888888888877766642 2223566666555566777788999998876
No 184
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=68.91 E-value=34 Score=29.78 Aligned_cols=39 Identities=31% Similarity=0.336 Sum_probs=30.4
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEE
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIIT 51 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vv 51 (277)
++...+++|.+.+|...+|..|.+++..|+..|.+++++
T Consensus 155 l~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~ 193 (325)
T cd08264 155 LKTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAV 193 (325)
T ss_pred HHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEE
Confidence 344667888676666667999999999999999986554
No 185
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=68.79 E-value=48 Score=28.63 Aligned_cols=53 Identities=23% Similarity=0.243 Sum_probs=36.5
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCC
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA 69 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga 69 (277)
+.+.+.+|.+.+|...+|.-|.+++..|+.+|.+.++.... ..+.+.++.+|+
T Consensus 132 ~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~ 184 (323)
T cd05282 132 EYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRR---DEQVEELKALGA 184 (323)
T ss_pred HhccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecC---hHHHHHHHhcCC
Confidence 34556777666666677889999999999999886555333 245555566775
No 186
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=68.73 E-value=64 Score=28.86 Aligned_cols=56 Identities=21% Similarity=0.243 Sum_probs=39.1
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
+...+++|.+.+|. .+|.-|.++...|+.+|.+.++.+.. ++.|...++.+|++.+
T Consensus 180 ~~~~~~~g~~vlI~-g~g~vG~~~~~la~~~G~~~v~~~~~--~~~k~~~~~~~g~~~~ 235 (365)
T cd08278 180 NVLKPRPGSSIAVF-GAGAVGLAAVMAAKIAGCTTIIAVDI--VDSRLELAKELGATHV 235 (365)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCcEE
Confidence 34567777665565 57999999999999999864444333 4567777778887433
No 187
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=68.70 E-value=57 Score=28.55 Aligned_cols=56 Identities=20% Similarity=0.204 Sum_probs=39.4
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHH-CCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAA-KQYRLIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~-~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
++...+++|.+.+|.. +|--|.+++..|+. .|.+.+++. .++.+.+.++.+|++.+
T Consensus 155 ~~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~---~~~~~~~~~~~~g~~~v 211 (338)
T PRK09422 155 IKVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVIAVD---INDDKLALAKEVGADLT 211 (338)
T ss_pred HHhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe---CChHHHHHHHHcCCcEE
Confidence 3455678886666666 78899999999987 488755542 34467777788887544
No 188
>PLN02527 aspartate carbamoyltransferase
Probab=68.68 E-value=65 Score=28.49 Aligned_cols=60 Identities=17% Similarity=0.126 Sum_probs=43.1
Q ss_pred HcCCCCCCCcEEEeeCCc---hHHHHHHHHHHHC-CCeEEEEeCCCC--CHHHHHHHHHcCCEEEEeC
Q 023801 14 AKGLITPGESVLIEPTSG---NTGIGLAFMAAAK-QYRLIITMPASM--SLERRIILRAFGAELVLTD 75 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsG---N~g~a~A~aa~~~-Gl~~~vvvp~~~--~~~~~~~~~~~Ga~v~~~~ 75 (277)
+.|.++ | .+|+-...+ |.++|++.+++++ |+.++++.|+.. ++.....++..|.++..++
T Consensus 145 ~~g~l~-g-~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 210 (306)
T PLN02527 145 EIGRLD-G-IKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESS 210 (306)
T ss_pred HhCCcC-C-CEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEc
Confidence 356653 4 346666554 6899999998887 999999999874 4445556666788887776
No 189
>PRK07062 short chain dehydrogenase; Provisional
Probab=68.66 E-value=70 Score=26.87 Aligned_cols=32 Identities=9% Similarity=0.060 Sum_probs=26.8
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeC
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 53 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp 53 (277)
...+|+..+|--|.++|......|.+++++..
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r 40 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGR 40 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeC
Confidence 36789999999999999999999998766644
No 190
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=68.60 E-value=30 Score=33.18 Aligned_cols=49 Identities=18% Similarity=0.177 Sum_probs=31.9
Q ss_pred cEEEeeCCchHH---HHHHHHHHHCCCeEEEEeCCCCCHH----HHHHHHHcCCEE
Q 023801 23 SVLIEPTSGNTG---IGLAFMAAAKQYRLIITMPASMSLE----RRIILRAFGAEL 71 (277)
Q Consensus 23 ~~vv~aSsGN~g---~a~A~aa~~~Gl~~~vvvp~~~~~~----~~~~~~~~Ga~v 71 (277)
+.+|.+..||.| ..+|......|.++.|++|...... ...+++.+|..+
T Consensus 137 ~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~~~~~~~~~~~~~~~~~~~~gi~~ 192 (544)
T PLN02918 137 RVLAICGPGNNGGDGLVAARHLHHFGYKPFVCYPKRTAKPLYTGLVTQLESLSVPF 192 (544)
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHCCCceEEEEcCCCCcHHHHHHHHHHHHcCCCe
Confidence 567777777764 4555555567999999987654332 244566666554
No 191
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=68.46 E-value=48 Score=24.89 Aligned_cols=97 Identities=14% Similarity=0.125 Sum_probs=50.3
Q ss_pred HHHHHHHCCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhc
Q 023801 37 LAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYET 115 (277)
Q Consensus 37 ~A~aa~~~Gl~~~vvvp~~~-~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 115 (277)
++...+..+.+..|+..... ...........+.+++.-.+ .++-+++..+.+.+.+.-....+...|-|.... -+-
T Consensus 2 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Q~g-~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~-~~l- 78 (122)
T PF09837_consen 2 LAALAQADGADVVLAYTPDGDHAAFRQLWLPSGFSFFPQQG-GDLGERMANAFQQAARGYEPVVLIGSDCPDLTP-DDL- 78 (122)
T ss_dssp ------TSSSEEEEEE----TTHHHHHHHH-TTSEEEE--S-SSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--H-HHH-
T ss_pred ccccccCCCcCEEEEEcCCccHHHHhccccCCCCEEeecCC-CCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCH-HHH-
Confidence 34556677888887765443 33333335566777766655 578888888876663332456666777777632 222
Q ss_pred hHHHHHhhhCCCCCEEEEecCCch
Q 023801 116 TGPELWKGSGGRIDALVSGIGTGG 139 (277)
Q Consensus 116 ~~~Ei~~Q~~~~~d~iv~pvG~Gg 139 (277)
.+.++.+ ...|.|+.|+-=||
T Consensus 79 --~~A~~~L-~~~d~VlgPa~DGG 99 (122)
T PF09837_consen 79 --EQAFEAL-QRHDVVLGPAEDGG 99 (122)
T ss_dssp --HHHHHHT-TT-SEEEEEBTTSS
T ss_pred --HHHHHHh-ccCCEEEeeccCCC
Confidence 2334444 44599999998776
No 192
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=68.45 E-value=20 Score=35.08 Aligned_cols=68 Identities=22% Similarity=0.243 Sum_probs=46.6
Q ss_pred HHHHHHHHcCCC------CCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCC---------C---------HHHHH
Q 023801 7 SMISDAEAKGLI------TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---------S---------LERRI 62 (277)
Q Consensus 7 ~~v~~a~~~g~l------~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~---------~---------~~~~~ 62 (277)
++...+.+.|.. .+..+.|+.-.+|-.|.+.|+..++.|.+++||-.... + ...+.
T Consensus 289 ~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~ 368 (639)
T PRK12809 289 YITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRRE 368 (639)
T ss_pred HHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHH
Confidence 344555555531 22235699999999999999999999999888853321 1 12456
Q ss_pred HHHHcCCEEEEe
Q 023801 63 ILRAFGAELVLT 74 (277)
Q Consensus 63 ~~~~~Ga~v~~~ 74 (277)
.++.+|.+++.-
T Consensus 369 ~~~~~Gv~~~~~ 380 (639)
T PRK12809 369 IFTAMGIDFHLN 380 (639)
T ss_pred HHHHCCeEEEcC
Confidence 677888887654
No 193
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=68.14 E-value=41 Score=30.27 Aligned_cols=55 Identities=20% Similarity=0.249 Sum_probs=39.6
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
++...+.+|.+.+| ...|.-|.+++..|+.+|.+.++++ +.+..|...++.+|+.
T Consensus 169 ~~~~~~~~g~~vlI-~g~g~vg~~~~~~a~~~G~~~vi~~--~~~~~~~~~~~~~g~~ 223 (375)
T cd08282 169 LELAGVQPGDTVAV-FGAGPVGLMAAYSAILRGASRVYVV--DHVPERLDLAESIGAI 223 (375)
T ss_pred HHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCe
Confidence 34556777766555 5679999999999999997544443 3356788888888884
No 194
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=68.11 E-value=46 Score=28.57 Aligned_cols=55 Identities=25% Similarity=0.363 Sum_probs=38.3
Q ss_pred cCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 15 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 15 ~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
.+.+.+|.+.+|...+|..|.++...|+..|.+++.+.+. +.+...++.+|++-+
T Consensus 137 ~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~ 191 (320)
T cd08243 137 SLGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRS---PERAALLKELGADEV 191 (320)
T ss_pred hcCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHhcCCcEE
Confidence 3456677666666667999999999999999885554332 355666677777433
No 195
>PLN02827 Alcohol dehydrogenase-like
Probab=68.03 E-value=41 Score=30.45 Aligned_cols=56 Identities=23% Similarity=0.248 Sum_probs=40.0
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
+.+.+.+|.+.+|. .+|--|.+++..|+.+|.+.++++.. ++.|.+.++.+|++-+
T Consensus 187 ~~~~~~~g~~VlV~-G~G~vG~~~iqlak~~G~~~vi~~~~--~~~~~~~a~~lGa~~~ 242 (378)
T PLN02827 187 NVADVSKGSSVVIF-GLGTVGLSVAQGAKLRGASQIIGVDI--NPEKAEKAKTFGVTDF 242 (378)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCcEE
Confidence 45667888665555 56889999999999999865544332 4567778888888543
No 196
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=67.94 E-value=57 Score=33.70 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=29.0
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeC
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 53 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp 53 (277)
++.|+.-.+|-.|.+.|+..++.|.+++||=.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~ 337 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEA 337 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEee
Confidence 36799999999999999999999999999843
No 197
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=67.87 E-value=46 Score=28.83 Aligned_cols=52 Identities=31% Similarity=0.432 Sum_probs=37.9
Q ss_pred CCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 16 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 16 g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
..+.++.+.+|...+|..|.+++..++..|.+++++.. ++.+...++.+|.+
T Consensus 158 ~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~~~~ 209 (332)
T cd08259 158 AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTR---SPEKLKILKELGAD 209 (332)
T ss_pred hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHcCCc
Confidence 56777767777778899999999999999988766643 23455555666653
No 198
>PRK13243 glyoxylate reductase; Reviewed
Probab=67.72 E-value=49 Score=29.58 Aligned_cols=97 Identities=18% Similarity=0.152 Sum_probs=61.2
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 102 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 102 (277)
++|..-..||-|+++|-.++.+|+++.++-|.. ... ....+|... . +.+ ++.++- +...++-
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~-~~~---~~~~~~~~~---~---~l~-------ell~~a-DiV~l~l 212 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTR-KPE---AEKELGAEY---R---PLE-------ELLRES-DFVSLHV 212 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC-Chh---hHHHcCCEe---c---CHH-------HHHhhC-CEEEEeC
Confidence 468888999999999999999999987765532 211 123445421 1 122 223333 4444433
Q ss_pred CCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHH
Q 023801 103 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITG 143 (277)
Q Consensus 103 ~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aG 143 (277)
-.++ +-...+..|.++++ +++.+++-+|.|+..--
T Consensus 213 P~t~----~T~~~i~~~~~~~m--k~ga~lIN~aRg~~vd~ 247 (333)
T PRK13243 213 PLTK----ETYHMINEERLKLM--KPTAILVNTARGKVVDT 247 (333)
T ss_pred CCCh----HHhhccCHHHHhcC--CCCeEEEECcCchhcCH
Confidence 2222 22344566888887 58899999999998743
No 199
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=67.58 E-value=59 Score=28.08 Aligned_cols=54 Identities=26% Similarity=0.370 Sum_probs=35.7
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCC
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA 69 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga 69 (277)
.+...++++...+|...+|..|.+++..|+.+|.+.+++.+ .+.+...++.+|+
T Consensus 135 ~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~---~~~~~~~~~~~g~ 188 (324)
T cd08244 135 LDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAG---GPAKTALVRALGA 188 (324)
T ss_pred HHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCC
Confidence 34566777766666666889999999999999887544322 2334455555665
No 200
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=67.56 E-value=40 Score=30.40 Aligned_cols=55 Identities=18% Similarity=0.271 Sum_probs=39.0
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
.+.+.+++|.+.+|. .+|.-|.+++..++.+|.+-++++. ..+.+++.++.+|++
T Consensus 183 ~~~~~~~~g~~VlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~--~~~~~~~~a~~lGa~ 237 (373)
T cd08299 183 VNTAKVTPGSTCAVF-GLGGVGLSAIMGCKAAGASRIIAVD--INKDKFAKAKELGAT 237 (373)
T ss_pred HhccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCc
Confidence 355677888665555 6799999999999999984334432 244677777888884
No 201
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=67.51 E-value=15 Score=35.26 Aligned_cols=56 Identities=14% Similarity=0.110 Sum_probs=42.5
Q ss_pred CCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCC------------------CCHHHHHHHHHcCCEEEEe
Q 023801 18 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS------------------MSLERRIILRAFGAELVLT 74 (277)
Q Consensus 18 l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~------------------~~~~~~~~~~~~Ga~v~~~ 74 (277)
..+| +.|+.-.+|-.|.+.|.++++.|.+++++=... ....+++.++.+|++++.-
T Consensus 134 ~~~g-~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~ 207 (564)
T PRK12771 134 PDTG-KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLG 207 (564)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 3455 569999999999999999999999977763221 1235677788999987654
No 202
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=67.51 E-value=75 Score=27.57 Aligned_cols=54 Identities=24% Similarity=0.289 Sum_probs=37.0
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHH-cCCE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA-FGAE 70 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~-~Ga~ 70 (277)
+.+.+.++.+.+|...+|-.|.+++..++.+|.+.+++.+ ++.+...++. +|++
T Consensus 139 ~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~~g~~ 193 (329)
T cd05288 139 EIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAG---SDEKCRWLVEELGFD 193 (329)
T ss_pred hccCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhhcCCc
Confidence 3455677766666666799999999999999987555432 3355666655 7764
No 203
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=67.44 E-value=70 Score=26.78 Aligned_cols=70 Identities=16% Similarity=0.130 Sum_probs=45.0
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe--CCCCChHHHHHHHHHHHHh
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT--DPAKGMKGAVQKAEEILAK 93 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~--~~~~~~~~~~~~a~~~~~~ 93 (277)
+..||+..++--|+++|....+.|.+++++-... .+.....++..|.++..+ |- .+.++..+..++..++
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl-~~~~~~~~~~~~~~~~ 80 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE-APETQAQVEALGRKFHFITADL-IQQKDIDSIVSQAVEV 80 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch-HHHHHHHHHHcCCeEEEEEeCC-CCHHHHHHHHHHHHHH
Confidence 3679999999999999999999999987764322 233345556678776544 32 2334444444444443
No 204
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=67.37 E-value=42 Score=27.27 Aligned_cols=63 Identities=17% Similarity=0.241 Sum_probs=38.0
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKT 94 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 94 (277)
+-+--.|||-.|.++|-++...|-.++++.....-+. -.+.+++.+. ..++..+...+...+.
T Consensus 21 R~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~------p~~~~~i~v~---sa~em~~~~~~~~~~~ 83 (185)
T PF04127_consen 21 RFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP------PPGVKVIRVE---SAEEMLEAVKELLPSA 83 (185)
T ss_dssp EEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----------TTEEEEE-S---SHHHHHHHHHHHGGGG
T ss_pred eEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc------cccceEEEec---chhhhhhhhccccCcc
Confidence 4444469999999999999999999999876632111 2466777776 3455555555554444
No 205
>PRK14031 glutamate dehydrogenase; Provisional
Probab=67.28 E-value=28 Score=32.47 Aligned_cols=51 Identities=10% Similarity=-0.099 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeC
Q 023801 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 53 (277)
Q Consensus 3 R~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp 53 (277)
|+..+.++.+++...+...+.+|+....||-|..+|.....+|.++++|-+
T Consensus 209 ~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 209 YGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred HHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 567777777765444444446799999999999999999999999988876
No 206
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=67.02 E-value=56 Score=28.78 Aligned_cols=56 Identities=21% Similarity=0.258 Sum_probs=38.7
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 71 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v 71 (277)
++.+.+++|.+.+|. .+|--|.+++..|+.+|.+.++++.. ++.+...++.+|++-
T Consensus 155 ~~~~~~~~g~~vlI~-g~g~vG~~a~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~ 210 (343)
T cd05285 155 CRRAGVRPGDTVLVF-GAGPIGLLTAAVAKAFGATKVVVTDI--DPSRLEFAKELGATH 210 (343)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCcE
Confidence 467788888776665 46788999999999999884333322 345666666677653
No 207
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=66.77 E-value=47 Score=29.90 Aligned_cols=85 Identities=9% Similarity=0.046 Sum_probs=49.0
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC-ChHHHHHHHHHHHH----hCCCeE
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK-GMKGAVQKAEEILA----KTPNAY 98 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~----~~~~~~ 98 (277)
.|+..+++..+..++..+....=+-.|++|.-+...-...++.+|++++.++... ++.-..+..++..+ .....+
T Consensus 93 ~I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i 172 (374)
T PRK02610 93 NISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVV 172 (374)
T ss_pred HEEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEE
Confidence 4777777788887665554432222566777666677778899999999987321 12111111222212 233566
Q ss_pred ecCCCCCCcc
Q 023801 99 MLQQFENPAN 108 (277)
Q Consensus 99 ~~~~~~~~~~ 108 (277)
|+++.+||..
T Consensus 173 ~l~~P~NPTG 182 (374)
T PRK02610 173 FVVHPNSPTG 182 (374)
T ss_pred EEeCCCCCCC
Confidence 7665567664
No 208
>PRK05993 short chain dehydrogenase; Provisional
Probab=66.67 E-value=81 Score=26.86 Aligned_cols=51 Identities=27% Similarity=0.191 Sum_probs=39.1
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
..+|+..+|.-|.++|......|.+++++... +.++..++..|.+++.+|-
T Consensus 6 ~vlItGasggiG~~la~~l~~~G~~Vi~~~r~---~~~~~~l~~~~~~~~~~Dl 56 (277)
T PRK05993 6 SILITGCSSGIGAYCARALQSDGWRVFATCRK---EEDVAALEAEGLEAFQLDY 56 (277)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHCCceEEEccC
Confidence 57889999999999999999999987776443 3455566666777777764
No 209
>PRK06182 short chain dehydrogenase; Validated
Probab=66.57 E-value=80 Score=26.74 Aligned_cols=67 Identities=18% Similarity=0.180 Sum_probs=45.1
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHh
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAK 93 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~ 93 (277)
..+|+.++|--|+++|......|.+++++... ..++..+...+.+++.+|-. +.+...+...+..++
T Consensus 5 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~l~~~~~~~~~~~~~Dv~-~~~~~~~~~~~~~~~ 71 (273)
T PRK06182 5 VALVTGASSGIGKATARRLAAQGYTVYGAARR---VDKMEDLASLGVHPLSLDVT-DEASIKAAVDTIIAE 71 (273)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhCCCeEEEeeCC-CHHHHHHHHHHHHHh
Confidence 67899999999999999999999987776433 34555555567777777642 333333344444343
No 210
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=66.06 E-value=74 Score=27.87 Aligned_cols=61 Identities=18% Similarity=0.105 Sum_probs=39.5
Q ss_pred HHHHHHHc-CCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 8 MISDAEAK-GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 8 ~v~~a~~~-g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
.+..+++. +.--++ .++..-..|+.|++++..++.+|.+++++-+. +.+....+.+|++.+
T Consensus 138 av~~a~~~~~~~l~g-~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~---~~~~~~~~~~G~~~~ 199 (296)
T PRK08306 138 AIMMAIEHTPITIHG-SNVLVLGFGRTGMTLARTLKALGANVTVGARK---SAHLARITEMGLSPF 199 (296)
T ss_pred HHHHHHHhCCCCCCC-CEEEEECCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHcCCeee
Confidence 44455543 221134 45777778999999999999999866666333 345666677887653
No 211
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=65.79 E-value=23 Score=32.00 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=40.4
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
+.++..++|..+..+++.+...+-.-.|++|..+-......++..|+++++++-
T Consensus 47 ~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~ 100 (375)
T PRK11706 47 AKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDI 100 (375)
T ss_pred CeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEec
Confidence 457888889888777665433333347888887777888888999999999874
No 212
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=65.77 E-value=83 Score=26.64 Aligned_cols=119 Identities=12% Similarity=0.072 Sum_probs=63.0
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHc---CCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCcchh
Q 023801 34 GIGLAFMAAAKQYRLIITMPASMSLERRIILRAF---GAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPK 110 (277)
Q Consensus 34 g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~---Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 110 (277)
|.++|-+.+++|+++.++-++..+...+..+..+ |.+|....+... +-...+.+.++.-....+..|.+-..
T Consensus 86 G~~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~---r~~l~~~L~~~G~~v~~~~~Y~~~~~-- 160 (248)
T COG1587 86 GEKTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNGG---REVLEEKLEERGAEVREVEVYRTEPP-- 160 (248)
T ss_pred cHHHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCCc---hHHHHHHHHhCCCEEEEEeeeeecCC--
Confidence 4567777777777776665556666777777766 567766654221 11223333333223344555553222
Q ss_pred hhhhchHHHH-HhhhCCCCCEEEEecCCchhHHHHHHHHhhcCC----CcEEEEEec
Q 023801 111 IHYETTGPEL-WKGSGGRIDALVSGIGTGGTITGAGKFLKEKNP----NIKLYGIEP 162 (277)
Q Consensus 111 ~g~~t~~~Ei-~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~----~~~vigV~~ 162 (277)
.+. ...++ ..+ ...+|+|+... +.++-.+...+...++ +.+++.+-|
T Consensus 161 -~~~-~~~~~~~~~-~~~~d~v~ftS--~~~v~~~~~~~~~~~~~~~~~~~v~~IG~ 212 (248)
T COG1587 161 -PLD-EATLIELLK-LGEVDAVVFTS--SSAVRALLALAPESGIEFLERKRVASIGP 212 (248)
T ss_pred -Ccc-HHHHHHHHH-hCCCCEEEEeC--HHHHHHHHHHccccchhHhhCceEEEecH
Confidence 112 11111 112 25789998874 4456666666665543 356666643
No 213
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=65.72 E-value=30 Score=27.43 Aligned_cols=50 Identities=22% Similarity=0.272 Sum_probs=41.0
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
.|+...+||-|...+..+..+|.+.+++ +..+.+++..+..++..+.++.
T Consensus 22 ~vvv~G~G~vg~gA~~~~~~lGa~v~~~---d~~~~~~~~~~~~~~~~i~~~~ 71 (168)
T PF01262_consen 22 KVVVTGAGRVGQGAAEIAKGLGAEVVVP---DERPERLRQLESLGAYFIEVDY 71 (168)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT-EEEEE---ESSHHHHHHHHHTTTEESEETT
T ss_pred EEEEECCCHHHHHHHHHHhHCCCEEEec---cCCHHHHHhhhcccCceEEEcc
Confidence 5888899999999999999999987665 3456778888999998888853
No 214
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=65.70 E-value=47 Score=29.26 Aligned_cols=50 Identities=28% Similarity=0.312 Sum_probs=34.6
Q ss_pred CCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 18 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 18 l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
.++|.+.+|.+ +|..|.+++..|+.+|.+.+++. ..++.|....+.+|++
T Consensus 161 ~~~g~~vlV~g-~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~ 210 (341)
T cd05281 161 DVSGKSVLITG-CGPIGLMAIAVAKAAGASLVIAS--DPNPYRLELAKKMGAD 210 (341)
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCcc
Confidence 35665666654 68889999999999998544444 3355677777777764
No 215
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=65.66 E-value=60 Score=28.45 Aligned_cols=55 Identities=29% Similarity=0.420 Sum_probs=40.1
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
.+.+.+++|.+.+|.+ +|-.|.++...++.+|.+.++++. .++.+...++.+|++
T Consensus 154 ~~~~~~~~g~~VlI~g-~g~vg~~~~~la~~~G~~~v~~~~--~~~~~~~~~~~~g~~ 208 (341)
T cd08262 154 VRRARLTPGEVALVIG-CGPIGLAVIAALKARGVGPIVASD--FSPERRALALAMGAD 208 (341)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEEC--CCHHHHHHHHHcCCc
Confidence 4566778886666664 689999999999999987655543 345777777888874
No 216
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=65.64 E-value=50 Score=28.31 Aligned_cols=52 Identities=27% Similarity=0.393 Sum_probs=37.6
Q ss_pred cCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 15 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 15 ~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
.+.+.+|.+.+|...+|..|.+++..|+..|.+.+++.+. .+...++.+|++
T Consensus 138 ~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~----~~~~~~~~~g~~ 189 (319)
T cd08267 138 AGKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST----RNAELVRSLGAD 189 (319)
T ss_pred hcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH----HHHHHHHHcCCC
Confidence 3456677666666667999999999999999986655432 556666777763
No 217
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=65.61 E-value=72 Score=28.05 Aligned_cols=52 Identities=25% Similarity=0.384 Sum_probs=37.0
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCC
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA 69 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga 69 (277)
+...+.++.+.+|.. +|..|.++...|+.+|++.+++.. +..+...++.+|+
T Consensus 159 ~~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~ 210 (345)
T cd08260 159 HQARVKPGEWVAVHG-CGGVGLSAVMIASALGARVIAVDI---DDDKLELARELGA 210 (345)
T ss_pred HccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHhCC
Confidence 345567776666666 789999999999999988655533 3455666667776
No 218
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=65.52 E-value=55 Score=28.73 Aligned_cols=54 Identities=24% Similarity=0.226 Sum_probs=36.5
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
..+.+.+|.+.+|. .+|-.|.++...|+.+|...++.+ ..+..+...++.+|++
T Consensus 161 ~~~~~~~~~~VlI~-g~g~vg~~~iqlak~~g~~~v~~~--~~~~~~~~~~~~~g~~ 214 (347)
T cd05278 161 ELAGIKPGSTVAVI-GAGPVGLCAVAGARLLGAARIIAV--DSNPERLDLAKEAGAT 214 (347)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--eCCHHHHHHHHHhCCc
Confidence 44567778666664 568889898889999997434444 3345666777777753
No 219
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=65.52 E-value=68 Score=28.02 Aligned_cols=45 Identities=18% Similarity=0.143 Sum_probs=31.5
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
+++..-..|+-|+++|..++.+|.+++++-+. +.+......+|.+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~---~~~~~~~~~~g~~ 196 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARS---SADLARITEMGLI 196 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHCCCe
Confidence 46888888999999999999999876655332 2344445556654
No 220
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=65.48 E-value=87 Score=26.76 Aligned_cols=55 Identities=29% Similarity=0.304 Sum_probs=37.6
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
.+.+.+.++.+.+|...+|..|.+++..++..|.+.+++.. ++.+...++.+|++
T Consensus 132 ~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~ 186 (325)
T TIGR02824 132 FQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAG---SDEKCAACEALGAD 186 (325)
T ss_pred HHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCc
Confidence 35667778867677777789999999999999987655433 23444455666653
No 221
>PRK09414 glutamate dehydrogenase; Provisional
Probab=65.47 E-value=27 Score=32.66 Aligned_cols=51 Identities=10% Similarity=-0.128 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeC
Q 023801 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 53 (277)
Q Consensus 3 R~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp 53 (277)
|+....+..+++...+...+.+|+....||-|..+|.....+|.+++.+..
T Consensus 213 ~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD 263 (445)
T PRK09414 213 YGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD 263 (445)
T ss_pred HHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 677788888876554444446799999999999999999888888777644
No 222
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=65.43 E-value=58 Score=24.99 Aligned_cols=53 Identities=30% Similarity=0.306 Sum_probs=38.7
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCH----HHHHHHHHcCCEEEEeC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL----ERRIILRAFGAELVLTD 75 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~----~~~~~~~~~Ga~v~~~~ 75 (277)
+.+|+..++.-|+++|..-.+.|-..++++..+.+. .....++..|.++..+.
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~ 58 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIE 58 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccc
Confidence 468899999999999999999977777666655222 23445567788777765
No 223
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=65.41 E-value=85 Score=26.65 Aligned_cols=54 Identities=31% Similarity=0.401 Sum_probs=37.4
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
+.+.+.+|.+.+|...+|..|.+++..++.+|.+.+++. .++.+.+.++.+|++
T Consensus 130 ~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~---~~~~~~~~~~~~g~~ 183 (320)
T cd05286 130 ETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTV---SSEEKAELARAAGAD 183 (320)
T ss_pred HhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHCCCC
Confidence 346677776666666689999999999999998755442 244556666667763
No 224
>PRK12743 oxidoreductase; Provisional
Probab=65.24 E-value=57 Score=27.35 Aligned_cols=71 Identities=13% Similarity=0.221 Sum_probs=45.5
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCH--HHHHHHHHcCCEEEEeCC-CCChHHHHHHHHHHHHh
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRIILRAFGAELVLTDP-AKGMKGAVQKAEEILAK 93 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~--~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~~~~~ 93 (277)
+.+|+..+|.-|.++|......|.+++++.....+. .....++.+|.++..+.. -.+.++..+...+..++
T Consensus 4 ~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (256)
T PRK12743 4 VAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQR 77 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 678999999999999999999999887765433222 224456667877765432 12334444444444444
No 225
>PRK05854 short chain dehydrogenase; Provisional
Probab=64.95 E-value=76 Score=27.80 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=25.1
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeC
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 53 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp 53 (277)
.+.|||..++--|.++|..-.+.|.+++++..
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~~Vil~~R 46 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGAEVILPVR 46 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 36788888888888888888888987766544
No 226
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=64.70 E-value=45 Score=31.02 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=39.8
Q ss_pred EEEeeCC---chHHHHHHHHHHHC-CCeEEEEeCCCC--CHHHHHHHHHcCCEEEEeC
Q 023801 24 VLIEPTS---GNTGIGLAFMAAAK-QYRLIITMPASM--SLERRIILRAFGAELVLTD 75 (277)
Q Consensus 24 ~vv~aSs---GN~g~a~A~aa~~~-Gl~~~vvvp~~~--~~~~~~~~~~~Ga~v~~~~ 75 (277)
+|+-... +|.++|++..++.+ |++++++-|+.. ++..+..++..|..+..++
T Consensus 243 kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~ 300 (429)
T PRK11891 243 HIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTD 300 (429)
T ss_pred EEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEc
Confidence 4665656 69999999997765 999999999865 3444566667798888776
No 227
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=64.64 E-value=63 Score=28.43 Aligned_cols=53 Identities=23% Similarity=0.448 Sum_probs=37.0
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCC-CeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQ-YRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~G-l~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
+...+.+|.+.+|. .+|..|.+++..|+.+| .++++ + +.++.|...++.+|++
T Consensus 160 ~~~~~~~g~~vlI~-g~g~~g~~~~~~a~~~G~~~v~~-~--~~~~~~~~~~~~~g~~ 213 (345)
T cd08286 160 LNGKVKPGDTVAIV-GAGPVGLAALLTAQLYSPSKIIM-V--DLDDNRLEVAKKLGAT 213 (345)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEE-E--cCCHHHHHHHHHhCCC
Confidence 34556777666665 56999999999999999 55433 3 3355667777778873
No 228
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=64.57 E-value=67 Score=26.22 Aligned_cols=131 Identities=15% Similarity=0.045 Sum_probs=70.0
Q ss_pred CCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCC---CCHHHHHHHHHcCCE-EEEeCCCCChHHHHHHHHHHHHh
Q 023801 18 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS---MSLERRIILRAFGAE-LVLTDPAKGMKGAVQKAEEILAK 93 (277)
Q Consensus 18 l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~---~~~~~~~~~~~~Ga~-v~~~~~~~~~~~~~~~a~~~~~~ 93 (277)
++|| .++..-.+|.-++++-++ +.+=.+.++-=+. .-....+..+.+|.+ +.++.+. -.++.. .+.
T Consensus 32 ~~~g-~~l~DIGaGtGsi~iE~a--~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~--Ap~~L~---~~~-- 101 (187)
T COG2242 32 PRPG-DRLWDIGAGTGSITIEWA--LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGD--APEALP---DLP-- 101 (187)
T ss_pred CCCC-CEEEEeCCCccHHHHHHH--HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEecc--chHhhc---CCC--
Confidence 5667 469999988888888888 4444444443222 122234455667764 4444431 111111 111
Q ss_pred CCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEEecCCCCc
Q 023801 94 TPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV 167 (277)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~ 167 (277)
.++..|+....+ +. --+|...+.-..-..+|+-+-+==+++-+...+++++-. .|+-++...+..
T Consensus 102 ~~daiFIGGg~~----i~----~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~-ei~~v~is~~~~ 166 (187)
T COG2242 102 SPDAIFIGGGGN----IE----EILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR-EIVQVQISRGKP 166 (187)
T ss_pred CCCEEEECCCCC----HH----HHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc-eEEEEEeeccee
Confidence 246666654422 11 112222222123356777777767777777777777654 777777666543
No 229
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=64.51 E-value=41 Score=22.69 Aligned_cols=50 Identities=20% Similarity=0.125 Sum_probs=37.5
Q ss_pred EEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCC-----HH----HHHHHHHcCCEEEEe
Q 023801 25 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-----LE----RRIILRAFGAELVLT 74 (277)
Q Consensus 25 vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~-----~~----~~~~~~~~Ga~v~~~ 74 (277)
++.-.+|..|.-+|.+.+.+|.+++++.+.... +. -.+.++..|-+++.-
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~ 60 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTN 60 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEES
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeC
Confidence 678899999999999999999999999765432 11 244566667776653
No 230
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=64.50 E-value=54 Score=28.93 Aligned_cols=49 Identities=24% Similarity=0.330 Sum_probs=36.6
Q ss_pred CCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 18 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 18 l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
+.++.+.+|...+|-.|.+++..|+.+|.+.+... . +.|...++.+|++
T Consensus 152 ~~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~-~---~~~~~~~~~~g~~ 200 (339)
T cd08249 152 ASKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA-S---PKNFDLVKSLGAD 200 (339)
T ss_pred CCCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE-C---cccHHHHHhcCCC
Confidence 35676666666679999999999999999866543 2 2566777788874
No 231
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=64.47 E-value=42 Score=31.01 Aligned_cols=97 Identities=19% Similarity=0.231 Sum_probs=58.6
Q ss_pred CCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCC
Q 023801 16 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTP 95 (277)
Q Consensus 16 g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~ 95 (277)
+...+| ++|+....|+-|+.+|..++.+|.+++++ .. .+.+....+..|.++. + .++ ..+. .
T Consensus 190 ~~~l~G-k~VvViG~G~IG~~vA~~ak~~Ga~ViV~-d~--dp~r~~~A~~~G~~v~--~----lee-------al~~-a 251 (406)
T TIGR00936 190 NLLIAG-KTVVVAGYGWCGKGIAMRARGMGARVIVT-EV--DPIRALEAAMDGFRVM--T----MEE-------AAKI-G 251 (406)
T ss_pred CCCCCc-CEEEEECCCHHHHHHHHHHhhCcCEEEEE-eC--ChhhHHHHHhcCCEeC--C----HHH-------HHhc-C
Confidence 333455 57999999999999999999999986554 22 2234445556687553 1 121 1122 2
Q ss_pred CeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchh
Q 023801 96 NAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGT 140 (277)
Q Consensus 96 ~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~ 140 (277)
+.++... .....+..|.++++ ++..+++-+|.+..
T Consensus 252 DVVItaT--------G~~~vI~~~~~~~m--K~GailiN~G~~~~ 286 (406)
T TIGR00936 252 DIFITAT--------GNKDVIRGEHFENM--KDGAIVANIGHFDV 286 (406)
T ss_pred CEEEECC--------CCHHHHHHHHHhcC--CCCcEEEEECCCCc
Confidence 3333211 11233445667766 46778888888765
No 232
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=64.33 E-value=1e+02 Score=27.38 Aligned_cols=54 Identities=24% Similarity=0.336 Sum_probs=36.9
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
+...+.++.+.+|. ..|..|.++...|+..|.+.++++.. +..+...++.+|++
T Consensus 176 ~~~~~~~g~~vLI~-g~g~vG~a~i~lak~~G~~~Vi~~~~--~~~~~~~~~~~g~~ 229 (363)
T cd08279 176 NTARVRPGDTVAVI-GCGGVGLNAIQGARIAGASRIIAVDP--VPEKLELARRFGAT 229 (363)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEcC--CHHHHHHHHHhCCe
Confidence 45667777666666 56899999999999999873333322 44556666777763
No 233
>PLN02477 glutamate dehydrogenase
Probab=64.29 E-value=58 Score=30.14 Aligned_cols=51 Identities=14% Similarity=-0.028 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeC
Q 023801 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 53 (277)
Q Consensus 3 R~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp 53 (277)
|+.+..++.+++.-.....+.+|+....||-|+.+|......|.+++.|..
T Consensus 187 ~Gv~~~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD 237 (410)
T PLN02477 187 RGVVFATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSD 237 (410)
T ss_pred HHHHHHHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEC
Confidence 567777777775433333345789999999999999999999988776643
No 234
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=64.06 E-value=76 Score=28.36 Aligned_cols=54 Identities=19% Similarity=0.273 Sum_probs=39.7
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
+...+.+|.+.+|. .+|..|.+++..|+.+|.+.++.+.. ++.+...++.+|++
T Consensus 177 ~~~~~~~g~~vlI~-g~g~vG~~a~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 230 (365)
T cd05279 177 NTAKVTPGSTCAVF-GLGGVGLSVIMGCKAAGASRIIAVDI--NKDKFEKAKQLGAT 230 (365)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCC
Confidence 45667888666665 67999999999999999875554332 55677777888874
No 235
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=64.04 E-value=52 Score=28.09 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=22.1
Q ss_pred cEEEeeCCchHH---HHHHHHHHHCCCeEEEEeCCC
Q 023801 23 SVLIEPTSGNTG---IGLAFMAAAKQYRLIITMPAS 55 (277)
Q Consensus 23 ~~vv~aSsGN~g---~a~A~aa~~~Gl~~~vvvp~~ 55 (277)
+.+|.+..||.| .++|..-+..|+++.+|++..
T Consensus 62 ~V~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~ 97 (246)
T PLN03050 62 RVLLVCGPGNNGGDGLVAARHLAHFGYEVTVCYPKQ 97 (246)
T ss_pred eEEEEECCCCCchhHHHHHHHHHHCCCeEEEEEcCC
Confidence 556767766653 455555555799999998643
No 236
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=64.04 E-value=1.1e+02 Score=28.06 Aligned_cols=107 Identities=14% Similarity=0.157 Sum_probs=62.1
Q ss_pred HHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHH
Q 023801 12 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEIL 91 (277)
Q Consensus 12 a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~ 91 (277)
+.+.|..-.| ++|-.-..||-|+.+|..++.+|+++.++=|..... . +. +... + ..++.
T Consensus 107 ~r~~g~~l~g-ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~-------~-~~-~~~~----~-------l~ell 165 (381)
T PRK00257 107 AEREGVDLAE-RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA-------E-GD-GDFV----S-------LERIL 165 (381)
T ss_pred hcccCCCcCc-CEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc-------c-cC-cccc----C-------HHHHH
Confidence 3344443334 568888999999999999999999998885532110 0 10 0000 1 12333
Q ss_pred HhCCCeEec-CCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHH
Q 023801 92 AKTPNAYML-QQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITG 143 (277)
Q Consensus 92 ~~~~~~~~~-~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aG 143 (277)
++- +...+ -|.. +.....=+.-+..|.+.+| +++.+++-+|.|+.+--
T Consensus 166 ~~a-DiV~lh~Plt-~~g~~~T~~li~~~~l~~m--k~gailIN~aRG~vVde 214 (381)
T PRK00257 166 EEC-DVISLHTPLT-KEGEHPTRHLLDEAFLASL--RPGAWLINASRGAVVDN 214 (381)
T ss_pred hhC-CEEEEeCcCC-CCccccccccCCHHHHhcC--CCCeEEEECCCCcccCH
Confidence 333 33332 3322 1100112345667888888 57899999999998754
No 237
>PRK08628 short chain dehydrogenase; Provisional
Probab=63.96 E-value=71 Score=26.68 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=38.0
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
+.+|+..+|--|.++|..-.+.|.+++++............++..|.+++...
T Consensus 9 ~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~ 61 (258)
T PRK08628 9 VVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQ 61 (258)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEE
Confidence 67889999999999999999999998776544322233445566677765554
No 238
>PRK08589 short chain dehydrogenase; Validated
Probab=63.90 E-value=72 Score=27.08 Aligned_cols=72 Identities=17% Similarity=0.067 Sum_probs=43.7
Q ss_pred CCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe--CCCCChHHHHHHHHHHHHh
Q 023801 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT--DPAKGMKGAVQKAEEILAK 93 (277)
Q Consensus 21 g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~--~~~~~~~~~~~~a~~~~~~ 93 (277)
+++.||+..+|--|+++|..-...|.+++++-...........++..|.++..+ |- .+.++..+...+..++
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl-~~~~~~~~~~~~~~~~ 79 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAYHVDI-SDEQQVKDFASEIKEQ 79 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhcCCeEEEEEeec-CCHHHHHHHHHHHHHH
Confidence 336788889999999999999999998877754411122244555667665444 32 2333333444444444
No 239
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=63.84 E-value=56 Score=28.76 Aligned_cols=52 Identities=19% Similarity=0.139 Sum_probs=36.7
Q ss_pred CCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 18 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 18 l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
+.+|.+.+|.+ .|..|.+++..|+.+|++.+++.+ +..+...++.+|++-++
T Consensus 167 ~~~g~~vlV~g-~g~vG~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~vi 218 (337)
T cd05283 167 VGPGKRVGVVG-IGGLGHLAVKFAKALGAEVTAFSR---SPSKKEDALKLGADEFI 218 (337)
T ss_pred CCCCCEEEEEC-CcHHHHHHHHHHHHcCCeEEEEcC---CHHHHHHHHHcCCcEEe
Confidence 67776666654 799999999999999997555433 23566666778875443
No 240
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=63.73 E-value=60 Score=29.40 Aligned_cols=53 Identities=19% Similarity=0.195 Sum_probs=37.5
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
.++..++|..+..+|+.+-..+-.-.|++|..+.......++.+|++++.++-
T Consensus 50 ~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~v~vd~ 102 (379)
T PRK11658 50 HAIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVLLGATPVMVDV 102 (379)
T ss_pred eEEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHHHcCCEEEEEec
Confidence 46667788877777765542222346778877777777788889999999874
No 241
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=63.60 E-value=63 Score=28.20 Aligned_cols=48 Identities=23% Similarity=0.201 Sum_probs=33.4
Q ss_pred CCcEEEeeCCchHHHHHHHHHHHC-CCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023801 21 GESVLIEPTSGNTGIGLAFMAAAK-QYRLIITMPASMSLERRIILRAFGAEL 71 (277)
Q Consensus 21 g~~~vv~aSsGN~g~a~A~aa~~~-Gl~~~vvvp~~~~~~~~~~~~~~Ga~v 71 (277)
|.+.+|...+|..|.+++..|+.+ |++++.+... +.+...++.+|++-
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~---~~~~~~l~~~g~~~ 197 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASR---PESQEWVLELGAHH 197 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCc---HHHHHHHHHcCCCE
Confidence 656566666789999999899887 8876555332 35666667777743
No 242
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=63.55 E-value=42 Score=30.13 Aligned_cols=53 Identities=15% Similarity=0.131 Sum_probs=40.3
Q ss_pred cEEEeeCC---chHHHHHHHH-HHHCCCeEEEEeCCCC--CHHHHHHHHHcCCEEEEeC
Q 023801 23 SVLIEPTS---GNTGIGLAFM-AAAKQYRLIITMPASM--SLERRIILRAFGAELVLTD 75 (277)
Q Consensus 23 ~~vv~aSs---GN~g~a~A~a-a~~~Gl~~~vvvp~~~--~~~~~~~~~~~Ga~v~~~~ 75 (277)
.+|+-... +|.+.|++.. ++.+|++++++.|+.. +...++.++..|.++..++
T Consensus 160 ~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 218 (338)
T PRK08192 160 MHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITD 218 (338)
T ss_pred CEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 34666666 6889999976 6677999999999864 4455666777899988876
No 243
>PRK12828 short chain dehydrogenase; Provisional
Probab=63.54 E-value=79 Score=25.77 Aligned_cols=55 Identities=18% Similarity=0.017 Sum_probs=39.0
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeCC
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDP 76 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~-~~~~~~~~~~Ga~v~~~~~ 76 (277)
.+.+|+.++|--|.+++....+.|.+++++.....+ ......+...+.+++..+-
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~ 63 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDL 63 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeec
Confidence 377999999999999999988889987666543221 1223445566777777664
No 244
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=63.30 E-value=59 Score=27.47 Aligned_cols=52 Identities=25% Similarity=0.218 Sum_probs=37.3
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCe-EEEEeCCCCCHHHHHHHHHcC
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYR-LIITMPASMSLERRIILRAFG 68 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~-~~vvvp~~~~~~~~~~~~~~G 68 (277)
++.+.+.+|.+.+|. ..|..|.++...|+.+|.+ ++++ ..++.+....+.+|
T Consensus 90 ~~~~~~~~g~~vlI~-g~g~vg~~~i~~a~~~g~~~vi~~---~~~~~~~~~~~~~g 142 (277)
T cd08255 90 VRDAEPRLGERVAVV-GLGLVGLLAAQLAKAAGAREVVGV---DPDAARRELAEALG 142 (277)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEE---CCCHHHHHHHHHcC
Confidence 345677888665555 5799999999999999988 4443 23456666777777
No 245
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=63.09 E-value=88 Score=26.04 Aligned_cols=20 Identities=20% Similarity=0.203 Sum_probs=11.7
Q ss_pred CHHHHHHHHHcCCEEEEeCC
Q 023801 57 SLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 57 ~~~~~~~~~~~Ga~v~~~~~ 76 (277)
++...+.....||+.++.++
T Consensus 74 ~~~q~~~a~~aGa~fiVsP~ 93 (211)
T COG0800 74 NPEQARQAIAAGAQFIVSPG 93 (211)
T ss_pred CHHHHHHHHHcCCCEEECCC
Confidence 34455555666666666664
No 246
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=62.89 E-value=1.1e+02 Score=26.87 Aligned_cols=53 Identities=30% Similarity=0.404 Sum_probs=35.3
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCC
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA 69 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga 69 (277)
+...+.+|.+.+|. .+|-.|.+++..|+..|++.+++. ..++.+...++.+|.
T Consensus 159 ~~~~~~~g~~VlV~-g~g~vg~~~~~la~~~g~~~v~~~--~~s~~~~~~~~~~g~ 211 (343)
T cd08235 159 RKAGIKPGDTVLVI-GAGPIGLLHAMLAKASGARKVIVS--DLNEFRLEFAKKLGA 211 (343)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCC
Confidence 34467888666666 468899999999999998833333 223455555566665
No 247
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=62.89 E-value=36 Score=32.53 Aligned_cols=53 Identities=9% Similarity=-0.020 Sum_probs=42.0
Q ss_pred cEEEeeCC---chHHHHHHHHHHHCC-CeEEEEeCCCC--CHHHHHHHHHcCCEEEEeC
Q 023801 23 SVLIEPTS---GNTGIGLAFMAAAKQ-YRLIITMPASM--SLERRIILRAFGAELVLTD 75 (277)
Q Consensus 23 ~~vv~aSs---GN~g~a~A~aa~~~G-l~~~vvvp~~~--~~~~~~~~~~~Ga~v~~~~ 75 (277)
.+|+-... +|.++|++..++++| ++++++.|... ++..+..++..|+.+..++
T Consensus 175 lkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~ 233 (525)
T PRK13376 175 IHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFS 233 (525)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 34666666 689999999999998 99999999865 4445566777899988776
No 248
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=62.61 E-value=77 Score=25.16 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=19.5
Q ss_pred cEEEeeCCchHH---HHHHHHHHHCCCeEEEEe
Q 023801 23 SVLIEPTSGNTG---IGLAFMAAAKQYRLIITM 52 (277)
Q Consensus 23 ~~vv~aSsGN~g---~a~A~aa~~~Gl~~~vvv 52 (277)
+.+|-+.+||.| .++|..-+..|+++++++
T Consensus 27 ~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 27 RVLILCGPGNNGGDGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred eEEEEECCCCChHHHHHHHHHHHHCCCeEEEEE
Confidence 677788888775 344444555799988854
No 249
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.36 E-value=99 Score=28.60 Aligned_cols=71 Identities=13% Similarity=0.140 Sum_probs=45.2
Q ss_pred CCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHH
Q 023801 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILA 92 (277)
Q Consensus 21 g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~ 92 (277)
+.+.+|+..+|.-|.++|....+.|.+++++-............+..+.+.+.+|-. +.+...+...+..+
T Consensus 210 g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~-~~~~~~~~~~~~~~ 280 (450)
T PRK08261 210 GKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDIT-APDAPARIAEHLAE 280 (450)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCC-CHHHHHHHHHHHHH
Confidence 446788888999999999999999998777644322222333345577777777753 33333333333333
No 250
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=62.12 E-value=64 Score=27.49 Aligned_cols=67 Identities=10% Similarity=0.109 Sum_probs=36.7
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEe---cCCCCCCcchhhhhhchHHHHHhhhC-CCCCEEEEecC
Q 023801 61 RIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYM---LQQFENPANPKIHYETTGPELWKGSG-GRIDALVSGIG 136 (277)
Q Consensus 61 ~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~g~~t~~~Ei~~Q~~-~~~d~iv~pvG 136 (277)
+......|-.|.++++.. ....+.++.+.+++ +.-. .++|.++. + -.+|.+++. ..||.++++.|
T Consensus 98 l~~~~~~~~~v~llG~~~--~v~~~a~~~l~~~y-~l~i~g~~~Gyf~~~---e-----~~~i~~~I~~s~~dil~VglG 166 (243)
T PRK03692 98 MARAGKEGTPVFLVGGKP--EVLAQTEAKLRTQW-NVNIVGSQDGYFTPE---Q-----RQALFERIHASGAKIVTVAMG 166 (243)
T ss_pred HHHHHhcCCeEEEECCCH--HHHHHHHHHHHHHh-CCEEEEEeCCCCCHH---H-----HHHHHHHHHhcCCCEEEEECC
Confidence 334456788999998632 33344445555555 3322 23333221 1 123555553 35999999998
Q ss_pred Cc
Q 023801 137 TG 138 (277)
Q Consensus 137 ~G 138 (277)
.-
T Consensus 167 ~P 168 (243)
T PRK03692 167 SP 168 (243)
T ss_pred Cc
Confidence 75
No 251
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=62.03 E-value=67 Score=27.72 Aligned_cols=47 Identities=23% Similarity=0.289 Sum_probs=33.8
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
+.+|...+|..|.+++..|+.+|.+++++.+ +..+...++.+|++-+
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 195 (325)
T cd05280 149 PVLVTGATGGVGSIAVAILAKLGYTVVALTG---KEEQADYLKSLGASEV 195 (325)
T ss_pred EEEEECCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcEE
Confidence 5566666799999999999999998544433 3466777778887433
No 252
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=61.86 E-value=83 Score=26.32 Aligned_cols=73 Identities=18% Similarity=0.177 Sum_probs=44.8
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC-CCChHHHHHHHHHHHHhC
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP-AKGMKGAVQKAEEILAKT 94 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~~~~~~ 94 (277)
.+.+|+..+|.-|.++|..-...|.+++++......+.....+...|.++..+.. -.+.++..+...+..+..
T Consensus 16 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 89 (258)
T PRK06935 16 KVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEF 89 (258)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3678999999999999999999999988776542112223344556666554432 123333344444444443
No 253
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=61.73 E-value=20 Score=28.91 Aligned_cols=66 Identities=11% Similarity=0.092 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCC--CCHHH--HHHHHHcCC---EEEEeCC
Q 023801 4 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS--MSLER--RIILRAFGA---ELVLTDP 76 (277)
Q Consensus 4 ~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~--~~~~~--~~~~~~~Ga---~v~~~~~ 76 (277)
.+...+..+.++|. + ++..| |.+-......++.+||.-.++.... .|..| .+.++.++. +|..+++
T Consensus 131 ~~~~~l~~L~~~Gi-----~-~~i~T-GD~~~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~~~~~v~~vGD 203 (215)
T PF00702_consen 131 GAKEALQELKEAGI-----K-VAILT-GDNESTASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQVKPGEVAMVGD 203 (215)
T ss_dssp THHHHHHHHHHTTE-----E-EEEEE-SSEHHHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTCTGGGEEEEES
T ss_pred hhhhhhhhhhccCc-----c-eeeee-ccccccccccccccccccccccccccccccchhHHHHHHHHhcCCCEEEEEcc
Confidence 35667777777775 3 55555 6666666677789999666666666 78888 888888763 6777774
No 254
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=61.40 E-value=1e+02 Score=26.24 Aligned_cols=53 Identities=28% Similarity=0.347 Sum_probs=35.9
Q ss_pred cCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 15 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 15 ~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
.+.+.+|.+.+|...+|..|.+++..++..|.+.++..+. ..+...++.+|++
T Consensus 139 ~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 191 (325)
T cd08253 139 RAGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASS---AEGAELVRQAGAD 191 (325)
T ss_pred HhCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCC
Confidence 3566777676777777899999999999888875554332 3445555556653
No 255
>PRK07814 short chain dehydrogenase; Provisional
Probab=61.36 E-value=99 Score=26.01 Aligned_cols=32 Identities=13% Similarity=0.207 Sum_probs=26.0
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeC
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 53 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp 53 (277)
.+.+|+..+|--|.++|-.....|.+++++..
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r 42 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAAR 42 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 36789999999999999888888987766543
No 256
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=61.33 E-value=39 Score=32.45 Aligned_cols=96 Identities=22% Similarity=0.136 Sum_probs=60.3
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 102 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 102 (277)
++++.+..|+.|+.+|-.-+..|.+++++- .++.+.+.++.+|.+++.-|..+
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId---~d~~~~~~~~~~g~~~i~GD~~~------------------------ 470 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIE---TSRTRVDELRERGIRAVLGNAAN------------------------ 470 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEE---CCHHHHHHHHHCCCeEEEcCCCC------------------------
Confidence 568999999999999998888888877663 23456666666666655554311
Q ss_pred CCCCcchhhhhhchHHHHHhhhC-CCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 103 FENPANPKIHYETTGPELWKGSG-GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 103 ~~~~~~~~~g~~t~~~Ei~~Q~~-~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
.|++++.+ ++.|.+++.++.-..-.-+....++.+|+.++++-
T Consensus 471 ---------------~~~L~~a~i~~a~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 471 ---------------EEIMQLAHLDCARWLLLTIPNGYEAGEIVASAREKRPDIEIIAR 514 (558)
T ss_pred ---------------HHHHHhcCccccCEEEEEcCChHHHHHHHHHHHHHCCCCeEEEE
Confidence 12222221 24566777666644443455555666677777764
No 257
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=61.32 E-value=1.1e+02 Score=26.72 Aligned_cols=50 Identities=22% Similarity=0.245 Sum_probs=34.8
Q ss_pred CCCCCCcEEEeeCCchHHHHHHHHHHHCC-CeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 17 LITPGESVLIEPTSGNTGIGLAFMAAAKQ-YRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 17 ~l~~g~~~vv~aSsGN~g~a~A~aa~~~G-l~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
.+.+|.+.+|.. +|..|.+++..|+.+| .+++++.. ++.+...++.+|++
T Consensus 164 ~~~~~~~vlI~g-~~~vg~~~~~~a~~~g~~~v~~~~~---~~~~~~~~~~~g~~ 214 (340)
T cd05284 164 YLDPGSTVVVIG-VGGLGHIAVQILRALTPATVIAVDR---SEEALKLAERLGAD 214 (340)
T ss_pred cCCCCCEEEEEc-CcHHHHHHHHHHHHhCCCcEEEEeC---CHHHHHHHHHhCCc
Confidence 455665656665 6669999999999998 67655432 34566777778863
No 258
>PRK08912 hypothetical protein; Provisional
Probab=61.27 E-value=88 Score=28.19 Aligned_cols=52 Identities=10% Similarity=0.052 Sum_probs=35.1
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
.|+..+++.++..+++.+-. +-.-.|++|......-...++.+|++++.++-
T Consensus 89 ~i~~t~G~~~al~~~~~~~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~ 140 (387)
T PRK08912 89 EVMVTSGATEALAAALLALV-EPGDEVVLFQPLYDAYLPLIRRAGGVPRLVRL 140 (387)
T ss_pred cEEEeCCcHHHHHHHHHHhc-CCCCEEEEeCCCchhhHHHHHHcCCEEEEEec
Confidence 47778888888876666542 22234556655555556677899999988764
No 259
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=60.98 E-value=92 Score=28.18 Aligned_cols=53 Identities=11% Similarity=-0.024 Sum_probs=35.3
Q ss_pred EEEeeCCchHHHHHHHHHHH-CCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 24 VLIEPTSGNTGIGLAFMAAA-KQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~-~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
.|+..+++.++..++..+-. -|=...|++|.-....-....+.+|++++.++-
T Consensus 92 ~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~ 145 (393)
T TIGR03538 92 HVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNC 145 (393)
T ss_pred eEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcCCeEEEeec
Confidence 47777888888877665532 243335777765444445567889999998863
No 260
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=60.85 E-value=98 Score=25.84 Aligned_cols=53 Identities=13% Similarity=0.119 Sum_probs=38.4
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
...+|+..+|.-|.++|....+.|.+++++- ........+.++..+.++..+.
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~-~~~~~~~~~~~~~~~~~~~~~~ 63 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGCDIVGIN-IVEPTETIEQVTALGRRFLSLT 63 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEec-CcchHHHHHHHHhcCCeEEEEE
Confidence 3679999999999999999999999876652 2223444556666676665543
No 261
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=60.74 E-value=96 Score=25.67 Aligned_cols=53 Identities=30% Similarity=0.485 Sum_probs=34.8
Q ss_pred cCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023801 15 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 71 (277)
Q Consensus 15 ~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v 71 (277)
...+.++.+.+|...++ .|++++..++..|.+.+++.+. +.+.+.++.+|++.
T Consensus 129 ~~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 181 (271)
T cd05188 129 AGVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRS---DEKLELAKELGADH 181 (271)
T ss_pred ccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHhCCce
Confidence 34446676666666556 9999999999999776555333 35556666666543
No 262
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=60.62 E-value=69 Score=28.53 Aligned_cols=104 Identities=15% Similarity=0.147 Sum_probs=65.9
Q ss_pred cEEEeeCCchHHHHHHHHHH-HCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecC
Q 023801 23 SVLIEPTSGNTGIGLAFMAA-AKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQ 101 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~-~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 101 (277)
++|..-.-||-|+.+|-.++ .+|+++..+-|.. ++. ....+|.+. + +.+ ++.++- +...++
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~-~~~---~~~~~~~~~--~----~l~-------ell~~s-Dvv~lh 207 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRH-HKE---AEERFNARY--C----DLD-------TLLQES-DFVCII 207 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCC-chh---hHHhcCcEe--c----CHH-------HHHHhC-CEEEEe
Confidence 56888889999999999997 8999887665432 211 123445432 1 122 233343 555443
Q ss_pred CCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhH--HHHHHHHhh
Q 023801 102 QFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTI--TGAGKFLKE 150 (277)
Q Consensus 102 ~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~--aGi~~~~~~ 150 (277)
--.++.+ ..-+..|.+++| +++.+++-++-|+++ ..+..+++.
T Consensus 208 ~plt~~T----~~li~~~~l~~m--k~ga~lIN~aRG~vVde~AL~~AL~~ 252 (323)
T PRK15409 208 LPLTDET----HHLFGAEQFAKM--KSSAIFINAGRGPVVDENALIAALQK 252 (323)
T ss_pred CCCChHH----hhccCHHHHhcC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 3223322 456778888998 589999999999986 455555554
No 263
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=60.59 E-value=50 Score=24.11 Aligned_cols=94 Identities=22% Similarity=0.131 Sum_probs=51.8
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC--CCChHHHHHHHHHHHHhCCCeEecCCCCCCcchhh
Q 023801 34 GIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP--AKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKI 111 (277)
Q Consensus 34 g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 111 (277)
...+|.+.++.|.++.++=.......-.+.++.+..+++.+.. ...+....+.++...+..|+...+ ..
T Consensus 17 l~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv---------~G 87 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIV---------VG 87 (121)
T ss_dssp HHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEE---------EE
T ss_pred HHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEE---------EE
Confidence 4556667777799888763333234556677888888887753 223444555555543444443332 33
Q ss_pred h-hhchHHH-HHhhhCCCCCEEEEecCC
Q 023801 112 H-YETTGPE-LWKGSGGRIDALVSGIGT 137 (277)
Q Consensus 112 g-~~t~~~E-i~~Q~~~~~d~iv~pvG~ 137 (277)
| +.+..+| +++.. ..+|+++..=|-
T Consensus 88 G~~~t~~~~~~l~~~-~~~D~vv~GegE 114 (121)
T PF02310_consen 88 GPHATADPEEILREY-PGIDYVVRGEGE 114 (121)
T ss_dssp ESSSGHHHHHHHHHH-HTSEEEEEETTS
T ss_pred CCchhcChHHHhccC-cCcceecCCChH
Confidence 3 2344444 34332 347888776553
No 264
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=60.58 E-value=42 Score=31.27 Aligned_cols=53 Identities=13% Similarity=0.033 Sum_probs=40.8
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCC-----CCHHHHHHHHHcCCEEEEeC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-----MSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~-----~~~~~~~~~~~~Ga~v~~~~ 75 (277)
+.|+.-.+||.|.-+|..+.++|.+++++.... .....++.++..|.+++.-.
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~~~ 330 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHFLC 330 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEecc
Confidence 469999999999999999999999988887542 12334466777888876543
No 265
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=60.36 E-value=79 Score=28.32 Aligned_cols=58 Identities=17% Similarity=0.094 Sum_probs=40.7
Q ss_pred CCCCCCCcEEEeeCC--chHHHHHHHHHHHCCCeEEEEeCCCCC--HHHHH----HHHHcCCEEEEeC
Q 023801 16 GLITPGESVLIEPTS--GNTGIGLAFMAAAKQYRLIITMPASMS--LERRI----ILRAFGAELVLTD 75 (277)
Q Consensus 16 g~l~~g~~~vv~aSs--GN~g~a~A~aa~~~Gl~~~vvvp~~~~--~~~~~----~~~~~Ga~v~~~~ 75 (277)
|.++ | .+|+-... .|.++|++.+++++|+.++++.|+... ...+. ..+..|.++....
T Consensus 151 g~l~-g-~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (332)
T PRK04284 151 KPYK-D-IKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITD 216 (332)
T ss_pred CCcC-C-cEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 6654 4 34555554 499999999999999999999998542 22232 2346788888775
No 266
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=60.07 E-value=94 Score=28.13 Aligned_cols=53 Identities=8% Similarity=-0.046 Sum_probs=33.8
Q ss_pred EEEeeCCchHHHHHHHHHHH-C-CCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 24 VLIEPTSGNTGIGLAFMAAA-K-QYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~-~-Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
.|+..+++.++..++..+-. - |-.-.|++|.-....-...++.+|++++.++-
T Consensus 92 ~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~vp~ 146 (396)
T PRK09147 92 QVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEPYFLNC 146 (396)
T ss_pred eEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEEEEecc
Confidence 47777888888776665432 1 11234555554444556667889999999873
No 267
>PRK08226 short chain dehydrogenase; Provisional
Probab=59.84 E-value=78 Score=26.50 Aligned_cols=52 Identities=19% Similarity=0.065 Sum_probs=35.0
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
+.+|+..+|.-|.++|......|.+++++-...........++..|.++..+
T Consensus 8 ~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~ 59 (263)
T PRK08226 8 TALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAV 59 (263)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEE
Confidence 6789999999999999999999998766643321112233344456665443
No 268
>PLN02342 ornithine carbamoyltransferase
Probab=59.81 E-value=61 Score=29.27 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=41.5
Q ss_pred HcCCCCCCCcEEEeeCC-chHHHHHHHHHHHCCCeEEEEeCCCC--CHHHHHHHHHcCC-EEEEeC
Q 023801 14 AKGLITPGESVLIEPTS-GNTGIGLAFMAAAKQYRLIITMPASM--SLERRIILRAFGA-ELVLTD 75 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSs-GN~g~a~A~aa~~~Gl~~~vvvp~~~--~~~~~~~~~~~Ga-~v~~~~ 75 (277)
+.|.++ |.+ |+-... .|.+++++.+++++|++++++.|+.- +...++..+.+|. ++...+
T Consensus 188 ~~G~l~-glk-va~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~ 251 (348)
T PLN02342 188 HIGRLE-GTK-VVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITN 251 (348)
T ss_pred HhCCcC-CCE-EEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEc
Confidence 456654 434 444433 68999999999999999999999864 3344555566774 666654
No 269
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=59.60 E-value=1e+02 Score=26.78 Aligned_cols=54 Identities=24% Similarity=0.271 Sum_probs=36.9
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
+...+.+|.+.+|. .+|..|.+++..|+.+|++.++++.. ++.+...++.+|+.
T Consensus 153 ~~~~~~~g~~vlI~-g~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 206 (334)
T cd08234 153 DLLGIKPGDSVLVF-GAGPIGLLLAQLLKLNGASRVTVAEP--NEEKLELAKKLGAT 206 (334)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCCe
Confidence 45667777665555 57888999999999999884433322 34566666777765
No 270
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=59.55 E-value=92 Score=25.10 Aligned_cols=49 Identities=16% Similarity=0.065 Sum_probs=33.6
Q ss_pred hhchHHHHHhhhCCCCCEEEEecCC-chhHHHHHHHHhhcCCCcEEEEEecCC
Q 023801 113 YETTGPELWKGSGGRIDALVSGIGT-GGTITGAGKFLKEKNPNIKLYGIEPTE 164 (277)
Q Consensus 113 ~~t~~~Ei~~Q~~~~~d~iv~pvG~-Gg~~aGi~~~~~~~~~~~~vigV~~~~ 164 (277)
|...+.|+-+.+ .+.++.++.-|+ .|++-.++++.++.+ -+++||-|..
T Consensus 17 ~~~~A~~lG~~l-a~~g~~lV~GGg~~GlM~a~a~ga~~~g--G~viGi~p~~ 66 (178)
T TIGR00730 17 YKELAAELGAYL-AGQGWGLVYGGGRVGLMGAIADAAMENG--GTAVGVNPSG 66 (178)
T ss_pred HHHHHHHHHHHH-HHCCCEEEECCChHhHHHHHHHHHHhcC--CeEEEecchh
Confidence 555666666666 334555555554 789989999988755 4789997654
No 271
>PRK07109 short chain dehydrogenase; Provisional
Probab=59.37 E-value=68 Score=28.45 Aligned_cols=72 Identities=15% Similarity=0.113 Sum_probs=44.9
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKT 94 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~-~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 94 (277)
..||+..+|--|+++|....+.|.+++++...... ......++..|.+++.+... .+.++..+.+.+..++.
T Consensus 10 ~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 10 VVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 67889999999999999999999987776543211 12244556778887655421 23333333444444433
No 272
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=59.32 E-value=35 Score=31.21 Aligned_cols=54 Identities=17% Similarity=0.279 Sum_probs=30.5
Q ss_pred cEEEeeCCchHHHHHHHHHHHC-CCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAK-QYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~-Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
+.++..+||..+.-.|.+.-.- |=++.++.-......-.+..+.||++++.++.
T Consensus 57 ~~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~ 111 (383)
T COG0075 57 DVVLLSGSGTLAMEAAVASLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEV 111 (383)
T ss_pred cEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeC
Confidence 3455666666665555444332 55555555554455555666677777766653
No 273
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=59.26 E-value=79 Score=30.25 Aligned_cols=104 Identities=26% Similarity=0.257 Sum_probs=66.3
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 102 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 102 (277)
++|..-.-|+-|+++|..++.+|++++.|=|.. +..+ ...+|.+.. + .+ ++.++- +...++-
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~-~~~~---~~~~g~~~~--~----l~-------ell~~a-DiV~l~l 202 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYI-SPER---AAQLGVELV--S----LD-------ELLARA-DFITLHT 202 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC-ChhH---HHhcCCEEE--c----HH-------HHHhhC-CEEEEcc
Confidence 468888999999999999999999988886643 2222 234565432 1 12 233333 4444433
Q ss_pred CCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHH--HHHHHHhh
Q 023801 103 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTIT--GAGKFLKE 150 (277)
Q Consensus 103 ~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~a--Gi~~~~~~ 150 (277)
-.++.+ ...+..|.++++ +++.+++-+|.|++.- .+..+++.
T Consensus 203 P~t~~t----~~li~~~~l~~m--k~ga~lIN~aRG~~vde~aL~~aL~~ 246 (526)
T PRK13581 203 PLTPET----RGLIGAEELAKM--KPGVRIINCARGGIIDEAALAEALKS 246 (526)
T ss_pred CCChHh----hcCcCHHHHhcC--CCCeEEEECCCCceeCHHHHHHHHhc
Confidence 222222 334557888888 5789999999999864 44445544
No 274
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=59.24 E-value=95 Score=29.85 Aligned_cols=59 Identities=20% Similarity=0.129 Sum_probs=48.2
Q ss_pred CCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 18 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 18 l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
+++|....+.+...-+-..++++|-..|....-+=|...+.....+++.-.+++++++.
T Consensus 69 i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~ 127 (537)
T KOG1176|consen 69 IKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDE 127 (537)
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEEEEcC
Confidence 55664445555556677888999999998888888888888899999999999999996
No 275
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=58.89 E-value=56 Score=27.76 Aligned_cols=69 Identities=20% Similarity=0.236 Sum_probs=41.3
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecC
Q 023801 61 RIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIG 136 (277)
Q Consensus 61 ~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG 136 (277)
-+.++..||++.++--. +...++.++++++. +..++-|.|-.. .+.-..+..+|-++. +++|-+|-+++
T Consensus 25 Ak~l~~~GAeL~fTy~~---e~l~krv~~la~~~-~s~~v~~cDV~~--d~~i~~~f~~i~~~~-g~lD~lVHsIa 93 (259)
T COG0623 25 AKALAEQGAELAFTYQG---ERLEKRVEELAEEL-GSDLVLPCDVTN--DESIDALFATIKKKW-GKLDGLVHSIA 93 (259)
T ss_pred HHHHHHcCCEEEEEecc---HHHHHHHHHHHhhc-cCCeEEecCCCC--HHHHHHHHHHHHHhh-CcccEEEEEec
Confidence 34567788888877531 23445666777766 334444444222 344555666666665 67888887765
No 276
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=58.86 E-value=72 Score=29.69 Aligned_cols=79 Identities=15% Similarity=0.176 Sum_probs=49.2
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHH----HHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEe
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII----LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYM 99 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~----~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (277)
..+..+||-.+..++..+- ++=--+|++|...-...... ++.+|+++.+++...+.+ ..+.+ ...+....|
T Consensus 78 ~av~~~SG~aAi~~al~al-l~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~-~l~~~---I~~~Tk~I~ 152 (432)
T PRK06702 78 GAVATASGQAAIMLAVLNI-CSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTAD-EIVAL---ANDKTKLVY 152 (432)
T ss_pred cEEEECCHHHHHHHHHHHh-cCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCHH-HHHHh---CCcCCeEEE
Confidence 4677899999999888764 33334677777655444443 688999999998522222 22222 222235666
Q ss_pred cCCCCCCc
Q 023801 100 LQQFENPA 107 (277)
Q Consensus 100 ~~~~~~~~ 107 (277)
+....||.
T Consensus 153 ~e~pgnP~ 160 (432)
T PRK06702 153 AESLGNPA 160 (432)
T ss_pred EEcCCCcc
Confidence 66667776
No 277
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=58.78 E-value=85 Score=24.77 Aligned_cols=69 Identities=16% Similarity=0.243 Sum_probs=44.0
Q ss_pred ChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCC---------CCCHHHHHHHHHcCCEEE
Q 023801 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA---------SMSLERRIILRAFGAELV 72 (277)
Q Consensus 2 dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~---------~~~~~~~~~~~~~Ga~v~ 72 (277)
|+.--..+.+|.+.|- + ..||.+|+|-+++-++-+... .+++++|.-+ ..+++-...++..|++|.
T Consensus 13 ~~tle~a~erA~elgi-k---~~vVAS~tG~tA~k~lemveg-~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~ 87 (186)
T COG1751 13 DETLEIAVERAKELGI-K---HIVVASSTGYTALKALEMVEG-DLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVL 87 (186)
T ss_pred HHHHHHHHHHHHhcCc-c---eEEEEecccHHHHHHHHhccc-CceEEEEEeecccccCCceecCHHHHHHHHHcCceee
Confidence 3445556777887765 2 334555668877665544432 3888877632 335667888899999987
Q ss_pred EeC
Q 023801 73 LTD 75 (277)
Q Consensus 73 ~~~ 75 (277)
.-.
T Consensus 88 ~~s 90 (186)
T COG1751 88 TQS 90 (186)
T ss_pred eeh
Confidence 665
No 278
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=58.77 E-value=1.1e+02 Score=26.59 Aligned_cols=54 Identities=28% Similarity=0.369 Sum_probs=36.9
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
+-+.++||.+.+|-+..|--|..+.-.++..|..++... ...+|.+..+..|++
T Consensus 140 e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~a---sTaeK~~~akenG~~ 193 (336)
T KOG1197|consen 140 EAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATA---STAEKHEIAKENGAE 193 (336)
T ss_pred HhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEe---ccHHHHHHHHhcCCc
Confidence 567789998888888889888888777777665544432 233555555555554
No 279
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=58.54 E-value=1.1e+02 Score=25.99 Aligned_cols=52 Identities=31% Similarity=0.496 Sum_probs=33.5
Q ss_pred cCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCC
Q 023801 15 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA 69 (277)
Q Consensus 15 ~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga 69 (277)
.+.+.++...+|...+|..|.+++..++..|.+.+++... ..+...++.+|+
T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~ 185 (323)
T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASS---EEKLALARALGA 185 (323)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCC---HHHHHHHHHcCC
Confidence 4566677666666666888889888888888874444222 244445555555
No 280
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=58.52 E-value=45 Score=29.42 Aligned_cols=61 Identities=21% Similarity=0.224 Sum_probs=42.2
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCH--HHHHH-HHHcCCEEEEeC
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRII-LRAFGAELVLTD 75 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~--~~~~~-~~~~Ga~v~~~~ 75 (277)
+.|.++ |.+..++.-.+|..+|++..++++|++++++-|+.-.+ ..++. .+..|.++...+
T Consensus 146 ~~g~l~-gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~ 209 (304)
T PRK00779 146 HRGSLK-GLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTH 209 (304)
T ss_pred HhCCcC-CcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEc
Confidence 456654 43433333348999999999999999999999986432 22322 466788887765
No 281
>PRK05957 aspartate aminotransferase; Provisional
Probab=58.32 E-value=75 Score=28.77 Aligned_cols=53 Identities=11% Similarity=0.155 Sum_probs=31.2
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
..|+..++++.+..++..+- +.=.-.|+++.-........++..|++++.++.
T Consensus 90 ~~i~~t~G~~~~l~~~~~~~-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~ 142 (389)
T PRK05957 90 QAIVVTAGSNMAFMNAILAI-TDPGDEIILNTPYYFNHEMAITMAGCQPILVPT 142 (389)
T ss_pred CeEEEeCChHHHHHHHHHHh-cCCCCEEEEeCCCCcCHHHHHHhcCCEEEEeec
Confidence 35788888888876665443 221223444432222234456789999988864
No 282
>PRK06197 short chain dehydrogenase; Provisional
Probab=58.20 E-value=1.2e+02 Score=26.29 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=26.1
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCC
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 54 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~ 54 (277)
.+.+|+..+|--|.++|..-.+.|.+++++...
T Consensus 17 k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~ 49 (306)
T PRK06197 17 RVAVVTGANTGLGYETAAALAAKGAHVVLAVRN 49 (306)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 367888888989999998888889887766543
No 283
>PLN00175 aminotransferase family protein; Provisional
Probab=58.12 E-value=1.5e+02 Score=27.13 Aligned_cols=84 Identities=10% Similarity=0.065 Sum_probs=45.8
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhCCCeEecCC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKTPNAYMLQQ 102 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~ 102 (277)
.|+..+++.++..++..+- +.-.-.|+++.-.-..-...++.+|++++.++-. .++.-..+..++........++++.
T Consensus 117 ~I~vt~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~i~i~~ 195 (413)
T PLN00175 117 EVTVTSGCTEAIAATILGL-INPGDEVILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAVPEDELKAAFTSKTRAILINT 195 (413)
T ss_pred CEEEeCCHHHHHHHHHHHh-CCCCCEEEEeCCCchhHHHHHHHcCCEEEEEECCcccCCCCHHHHHHhcCcCceEEEecC
Confidence 3677777788877766653 3323345555544555567778899999988632 1121111222222222234566655
Q ss_pred CCCCcc
Q 023801 103 FENPAN 108 (277)
Q Consensus 103 ~~~~~~ 108 (277)
.+||..
T Consensus 196 p~NPtG 201 (413)
T PLN00175 196 PHNPTG 201 (413)
T ss_pred CCCCCC
Confidence 556653
No 284
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=58.11 E-value=1.1e+02 Score=25.52 Aligned_cols=149 Identities=17% Similarity=0.126 Sum_probs=75.2
Q ss_pred HHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCC---------------C-----HHHHHHHH
Q 023801 6 YSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---------------S-----LERRIILR 65 (277)
Q Consensus 6 ~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~---------------~-----~~~~~~~~ 65 (277)
...+..+++++. ..|+...+......++-.+...+++.+.+..... + ..-...+.
T Consensus 56 ~~~~~~l~~~~v-----~~iig~~~~~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (298)
T cd06268 56 AAAARELVDDGV-----DAVIGPLSSGVALAAAPVAEEAGVPLISPGATSPALTGKGNPYVFRTAPSDAQQAAALADYLA 130 (298)
T ss_pred HHHHHHHHhCCc-----eEEEcCCcchhHHhhHHHHHhCCCcEEccCCCCcccccCCCceEEEcccCcHHHHHHHHHHHH
Confidence 345556666544 4466555555556777888888988765532110 0 01123344
Q ss_pred HcC--CEEEEeCCCCChH-HHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHH
Q 023801 66 AFG--AELVLTDPAKGMK-GAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTIT 142 (277)
Q Consensus 66 ~~G--a~v~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~a 142 (277)
..| -+|.++.....+. +..+...+..++. +.-.......+.. ..-+.....+|.+ ..||.|++.. .+....
T Consensus 131 ~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~-g~~i~~~~~~~~~-~~~~~~~~~~l~~---~~~~~vi~~~-~~~~~~ 204 (298)
T cd06268 131 EKGKVKKVAIIYDDYAYGRGLAAAFREALKKL-GGEVVAEETYPPG-ATDFSPLIAKLKA---AGPDAVFLAG-YGGDAA 204 (298)
T ss_pred HhcCCCEEEEEEcCCchhHHHHHHHHHHHHHc-CCEEEEEeccCCC-CccHHHHHHHHHh---cCCCEEEEcc-ccchHH
Confidence 444 5666664322222 2233333344444 2211111110111 1112223333322 3588887764 446778
Q ss_pred HHHHHHhhcCCCcEEEEEecCCC
Q 023801 143 GAGKFLKEKNPNIKLYGIEPTES 165 (277)
Q Consensus 143 Gi~~~~~~~~~~~~vigV~~~~~ 165 (277)
++.+.++..+.++++++......
T Consensus 205 ~~~~~~~~~g~~~~~~~~~~~~~ 227 (298)
T cd06268 205 LFLKQAREAGLKVPIVGGDGAAA 227 (298)
T ss_pred HHHHHHHHcCCCCcEEecCccCC
Confidence 89999988777788887765443
No 285
>PRK05826 pyruvate kinase; Provisional
Probab=57.89 E-value=1.7e+02 Score=27.62 Aligned_cols=124 Identities=11% Similarity=0.099 Sum_probs=70.7
Q ss_pred HHHHHHHHCCCeEEEE-----------eCCCCCHHHHHHHHHcCCEEEEeCCCC---Ch-HHHHHHHHHHHHhCCCeEec
Q 023801 36 GLAFMAAAKQYRLIIT-----------MPASMSLERRIILRAFGAELVLTDPAK---GM-KGAVQKAEEILAKTPNAYML 100 (277)
Q Consensus 36 a~A~aa~~~Gl~~~vv-----------vp~~~~~~~~~~~~~~Ga~v~~~~~~~---~~-~~~~~~a~~~~~~~~~~~~~ 100 (277)
-+...|++.|.++.+- .|..+.-.-+...-..|++-+...++. .| .++.+...+.+.+-...++.
T Consensus 263 ~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~ 342 (465)
T PRK05826 263 KIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAMARICKGAEKEFSI 342 (465)
T ss_pred HHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcCHHHHHHHHHHHHHHHHhccch
Confidence 3456788899988774 233333344666667899988876431 23 34544443333322111110
Q ss_pred ----CCCCCC-cchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEEecCC
Q 023801 101 ----QQFENP-ANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTE 164 (277)
Q Consensus 101 ----~~~~~~-~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV~~~~ 164 (277)
...... ..........+.++.++++ ..+.||+.+-+|.++--+++ ..|...|+++.+..
T Consensus 343 ~~~~~~~~~~~~~~~~~ia~aa~~~a~~l~-~a~~Ivv~T~sG~ta~~isk----~RP~~pI~~~t~~~ 406 (465)
T PRK05826 343 NLSKHRLDRQFDRIDEAIAMSAMYAANHLK-GVKAIVALTESGRTARLISR----FRPGAPIFAVTRDE 406 (465)
T ss_pred hhhhhhccccccchHHHHHHHHHHHHHhcC-CCCEEEEECCCcHHHHHHHh----hCCCCCEEEEcCCH
Confidence 110010 0112344555567777762 26789999999988766554 35888999998654
No 286
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=57.78 E-value=1.1e+02 Score=25.56 Aligned_cols=54 Identities=9% Similarity=0.031 Sum_probs=38.4
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 75 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~-~~~~~~~~~~Ga~v~~~~ 75 (277)
.+.+|+..+|.-|.+++......|.+++++...... ..-...++..|.++..+.
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVA 62 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEE
Confidence 367999999999999999999999987766443211 223445566788776543
No 287
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=57.50 E-value=1.3e+02 Score=26.87 Aligned_cols=60 Identities=23% Similarity=0.223 Sum_probs=42.3
Q ss_pred HcCCCCCCCcEEEeeCCc--hHHHHHHHHHHHCCCeEEEEeCCCCC--HHHHH----HHHHcCCEEEEeC
Q 023801 14 AKGLITPGESVLIEPTSG--NTGIGLAFMAAAKQYRLIITMPASMS--LERRI----ILRAFGAELVLTD 75 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsG--N~g~a~A~aa~~~Gl~~~vvvp~~~~--~~~~~----~~~~~Ga~v~~~~ 75 (277)
+.|.++ | .+|+-...+ |.++|++..++++|++++++.|+... +..+. ..+..|.++..++
T Consensus 149 ~~g~l~-g-~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (331)
T PRK02102 149 HFGPLK-G-LKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITE 216 (331)
T ss_pred HhCCCC-C-CEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEc
Confidence 356654 4 346666664 89999999999999999999998643 22222 2345788887776
No 288
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=57.44 E-value=36 Score=26.48 Aligned_cols=83 Identities=17% Similarity=0.084 Sum_probs=46.4
Q ss_pred HHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCC-CCEEEEecCCc
Q 023801 60 RRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGR-IDALVSGIGTG 138 (277)
Q Consensus 60 ~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~-~d~iv~pvG~G 138 (277)
-.+.++..|.+|+..+--..-+++.+.| .++..+..-++.. ..+|.+...++.+.+.+. +++|.+-+ +|
T Consensus 32 ia~~l~d~GfeVi~~g~~~tp~e~v~aA---~~~dv~vIgvSsl------~g~h~~l~~~lve~lre~G~~~i~v~~-GG 101 (143)
T COG2185 32 IARALADAGFEVINLGLFQTPEEAVRAA---VEEDVDVIGVSSL------DGGHLTLVPGLVEALREAGVEDILVVV-GG 101 (143)
T ss_pred HHHHHHhCCceEEecCCcCCHHHHHHHH---HhcCCCEEEEEec------cchHHHHHHHHHHHHHHhCCcceEEee-cC
Confidence 3567788899998887433333333333 2343344544432 457888888888887432 56665222 23
Q ss_pred hhHHHHHHHHhhcC
Q 023801 139 GTITGAGKFLKEKN 152 (277)
Q Consensus 139 g~~aGi~~~~~~~~ 152 (277)
-...+=...+++.+
T Consensus 102 vip~~d~~~l~~~G 115 (143)
T COG2185 102 VIPPGDYQELKEMG 115 (143)
T ss_pred ccCchhHHHHHHhC
Confidence 33334345555544
No 289
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=57.43 E-value=73 Score=27.98 Aligned_cols=47 Identities=23% Similarity=0.279 Sum_probs=34.1
Q ss_pred CCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 20 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 20 ~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
+|.+.+|...+|..|.+++..|+.+|+++++.... .+...++.+|.+
T Consensus 162 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~----~~~~~~~~~g~~ 208 (350)
T cd08248 162 AGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST----DAIPLVKSLGAD 208 (350)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc----chHHHHHHhCCc
Confidence 36566666668999999999999999986554432 356677777764
No 290
>PRK07324 transaminase; Validated
Probab=57.34 E-value=81 Score=28.42 Aligned_cols=52 Identities=12% Similarity=-0.033 Sum_probs=33.4
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
.|+..+++..+..+++.+- ++-.-.|+++.-.-..-....+.+|++++.++-
T Consensus 82 ~vi~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~ 133 (373)
T PRK07324 82 NILQTNGATGANFLVLYAL-VEPGDHVISVYPTYQQLYDIPESLGAEVDYWQL 133 (373)
T ss_pred hEEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCchhHHHHHHHcCCEEEEEec
Confidence 4777777777777766553 332234555554444455677889999998873
No 291
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=57.30 E-value=2.2e+02 Score=29.73 Aligned_cols=32 Identities=13% Similarity=0.009 Sum_probs=28.7
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 54 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~ 54 (277)
..|+.-.+|-.|.+.|...++.|.+++||=..
T Consensus 431 ~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~ 462 (1006)
T PRK12775 431 GKVAICGSGPAGLAAAADLVKYGVDVTVYEAL 462 (1006)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence 46999999999999999999999999998543
No 292
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=57.23 E-value=1.3e+02 Score=26.08 Aligned_cols=56 Identities=29% Similarity=0.434 Sum_probs=38.7
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
+.+.+.++.+.++. .+|..|.+++..|+.+|.++++. ..++.+.+.++.+|++-+.
T Consensus 159 ~~~~~~~~~~vli~-g~g~vG~~~~~la~~~G~~V~~~---~~s~~~~~~~~~~g~~~~~ 214 (338)
T cd08254 159 RAGEVKPGETVLVI-GLGGLGLNAVQIAKAMGAAVIAV---DIKEEKLELAKELGADEVL 214 (338)
T ss_pred hccCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCEEEEE---cCCHHHHHHHHHhCCCEEE
Confidence 34567777666665 56889999999999999885444 2245666777777775433
No 293
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=57.16 E-value=1e+02 Score=28.22 Aligned_cols=126 Identities=15% Similarity=0.179 Sum_probs=64.3
Q ss_pred EeeCCc-hHHHHHHHHHHHCCCeEEEEeC-CCCC----HHHHHHHHHcCC-EEEEeCCCCChHHHHHHHHHHHHhCCCeE
Q 023801 26 IEPTSG-NTGIGLAFMAAAKQYRLIITMP-ASMS----LERRIILRAFGA-ELVLTDPAKGMKGAVQKAEEILAKTPNAY 98 (277)
Q Consensus 26 v~aSsG-N~g~a~A~aa~~~Gl~~~vvvp-~~~~----~~~~~~~~~~Ga-~v~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (277)
...|+| .+...+.+...+.+.+++.|.- -+.+ ..-.+....+|| +++.+|....|.+ +......+. +..
T Consensus 2 LAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~~--~~i~~aI~a--nA~ 77 (388)
T PF00764_consen 2 LAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARDEFAE--DYIFPAIKA--NAL 77 (388)
T ss_dssp EE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HHHHHH--HTHHHHHHT--T--
T ss_pred eeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHHHHHH--HHHHHHHHH--HHH
Confidence 344555 3455566666666688887752 2222 233445678899 9999984221111 111122221 233
Q ss_pred ecCCCCC---CcchhhhhhchHHHHHhhhCCCCCEEEE-ecCCchhHHHHHHHHhhcCCCcEEEE
Q 023801 99 MLQQFEN---PANPKIHYETTGPELWKGSGGRIDALVS-GIGTGGTITGAGKFLKEKNPNIKLYG 159 (277)
Q Consensus 99 ~~~~~~~---~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~-pvG~Gg~~aGi~~~~~~~~~~~~vig 159 (277)
|-..|-. ...+. ...-..|+.++. ..++|.- ++|.|--..=+-.+++.+.|+.+|++
T Consensus 78 Yeg~YpL~tsl~Rpl--Ia~~~v~~A~~~--ga~~vaHG~TgkGNDqvRFe~~~~al~P~l~via 138 (388)
T PF00764_consen 78 YEGRYPLSTSLARPL--IAKKLVEVAREE--GADAVAHGCTGKGNDQVRFELSIRALAPELKVIA 138 (388)
T ss_dssp BTTTB--CCCCHHHH--HHHHHHHHHHHH--T-SEEE----TTSSHHHHHHHHHHHHSTTSEEE-
T ss_pred hCCCccccccchHHH--HHHHHHHHHHHc--CCeEEeccCCcCCCchhHHHHHHHHhCcCCcEec
Confidence 3333321 11222 233344666665 4678887 56888888888888898999888865
No 294
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=57.00 E-value=1.1e+02 Score=25.24 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=37.5
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
.+.||+..+|.-|.++|......|..++++-.. ........++.++.++..+.
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~ 58 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAGADIVGAGRS-EPSETQQQVEALGRRFLSLT 58 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCc-hHHHHHHHHHhcCCceEEEE
Confidence 367888889999999999999999987766532 22333455566776655543
No 295
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=57.00 E-value=46 Score=29.57 Aligned_cols=55 Identities=24% Similarity=0.402 Sum_probs=35.2
Q ss_pred EEEeeCCchHHHHHHHHHHHC----CCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAK----QYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKT 94 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~----Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 94 (277)
.+++.-+=|++-|+|++|-.. |=..++|+|.+. .+.....|.++.+.|.+++++.
T Consensus 80 illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH----------------~I~d~~af~~av~~A~~~A~~g 138 (333)
T COG0836 80 IILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDH----------------VIADEEAFLNAVKKAEKAAEEG 138 (333)
T ss_pred eEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcc----------------eeccHHHHHHHHHHHHHHHHcC
Confidence 578888888888888777543 323455666542 2222124677888888888774
No 296
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=56.95 E-value=40 Score=28.72 Aligned_cols=51 Identities=16% Similarity=-0.050 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHc-CCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeC
Q 023801 3 RIGYSMISDAEAK-GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 53 (277)
Q Consensus 3 R~a~~~v~~a~~~-g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp 53 (277)
+++...++.+++. +.-.....+++....||-|..+|..-.++|.+++.+..
T Consensus 12 ~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD 63 (244)
T PF00208_consen 12 YGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSD 63 (244)
T ss_dssp HHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEec
Confidence 4667777777776 33212336788899999999999999999988887754
No 297
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=56.94 E-value=80 Score=27.86 Aligned_cols=61 Identities=16% Similarity=0.189 Sum_probs=41.2
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCC--HHHHHH----HHHcCCEEEEeC
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRII----LRAFGAELVLTD 75 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~--~~~~~~----~~~~Ga~v~~~~ 75 (277)
+.|.++ |.+..+..-.+|..+|++..++++|+.++++.|+... ....+. .+..|.++...+
T Consensus 142 ~~g~l~-g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 208 (304)
T TIGR00658 142 HFGKLK-GVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTH 208 (304)
T ss_pred HhCCCC-CcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 456653 4333333333799999999999999999999998643 233333 355788887775
No 298
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=56.88 E-value=64 Score=28.91 Aligned_cols=55 Identities=20% Similarity=0.265 Sum_probs=35.4
Q ss_pred CCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 16 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 16 g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
+.+++|.+ |+...+|.-|.+++..|+.+|.+.+++... +..+....+.+|++-++
T Consensus 179 ~~~~~g~~-VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~--~~~~~~~~~~~Ga~~vi 233 (360)
T PLN02586 179 GMTEPGKH-LGVAGLGGLGHVAVKIGKAFGLKVTVISSS--SNKEDEAINRLGADSFL 233 (360)
T ss_pred cccCCCCE-EEEECCCHHHHHHHHHHHHCCCEEEEEeCC--cchhhhHHHhCCCcEEE
Confidence 44566755 454667999999999999999875544332 22334455678885443
No 299
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=56.78 E-value=42 Score=30.41 Aligned_cols=51 Identities=20% Similarity=0.174 Sum_probs=33.3
Q ss_pred CCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 19 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 19 ~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
++|.+ |+...+|.-|.+++..|+.+|.+.+++.+. ++.+...++.+|++.+
T Consensus 177 ~~g~~-VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~--~~~~~~~a~~lGa~~~ 227 (375)
T PLN02178 177 ESGKR-LGVNGLGGLGHIAVKIGKAFGLRVTVISRS--SEKEREAIDRLGADSF 227 (375)
T ss_pred CCCCE-EEEEcccHHHHHHHHHHHHcCCeEEEEeCC--hHHhHHHHHhCCCcEE
Confidence 45644 555566889999999999999875444332 2334566677888543
No 300
>PRK04148 hypothetical protein; Provisional
Probab=56.52 E-value=65 Score=24.76 Aligned_cols=49 Identities=12% Similarity=0.157 Sum_probs=39.2
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
..+++-..| +|.++|..-++.|..++.+ +.++..++.++..+.+++..|
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaI---Di~~~aV~~a~~~~~~~v~dD 66 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVI---DINEKAVEKAKKLGLNAFVDD 66 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEE---ECCHHHHHHHHHhCCeEEECc
Confidence 458888888 8888888888999887776 556667888888888888776
No 301
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=56.41 E-value=84 Score=28.25 Aligned_cols=51 Identities=18% Similarity=0.237 Sum_probs=37.0
Q ss_pred EEeeCC-chHHHHHHHHHHHCCCeEEEEeCCCC--CHHHHHHH----HHcCCEEEEeC
Q 023801 25 LIEPTS-GNTGIGLAFMAAAKQYRLIITMPASM--SLERRIIL----RAFGAELVLTD 75 (277)
Q Consensus 25 vv~aSs-GN~g~a~A~aa~~~Gl~~~vvvp~~~--~~~~~~~~----~~~Ga~v~~~~ 75 (277)
|+-... .|.++|+...++++|++++++-|..- +...+..+ +..|.++...+
T Consensus 157 v~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (338)
T PRK02255 157 VVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTD 214 (338)
T ss_pred EEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEc
Confidence 444444 78999999999999999999999864 33334333 34688888775
No 302
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=56.38 E-value=1.2e+02 Score=25.45 Aligned_cols=51 Identities=16% Similarity=-0.038 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeC
Q 023801 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 53 (277)
Q Consensus 3 R~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp 53 (277)
++.+..++.+++.-.......+|+....||-|+.+|-.....|.+++-+..
T Consensus 12 ~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D 62 (227)
T cd01076 12 RGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSD 62 (227)
T ss_pred HHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 466677777765433222235788899999999999998888888775543
No 303
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=56.35 E-value=39 Score=30.66 Aligned_cols=54 Identities=17% Similarity=0.113 Sum_probs=37.1
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
..++..++|..+..+++.+-..+=.-.|++|..+.......+...|+++++++-
T Consensus 47 ~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~ 100 (376)
T TIGR02379 47 KKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDI 100 (376)
T ss_pred CeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEec
Confidence 457777888777666655432222345777777777777777888999999874
No 304
>PRK06836 aspartate aminotransferase; Provisional
Probab=56.24 E-value=1.2e+02 Score=27.47 Aligned_cols=52 Identities=15% Similarity=0.166 Sum_probs=33.6
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
.|+..++++.+..++..+- ..-.-.|+++......-...++.+|++++.++.
T Consensus 98 ~i~~t~G~~~al~~~~~~l-~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~ 149 (394)
T PRK06836 98 HIVMTCGAAGALNVALKAI-LNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPT 149 (394)
T ss_pred cEEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCCccHHHHHHHcCCEEEEEec
Confidence 4777777788877665442 222234556654444456667889999999874
No 305
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=56.01 E-value=88 Score=28.22 Aligned_cols=83 Identities=7% Similarity=-0.022 Sum_probs=44.7
Q ss_pred EEEeeCCchHHHHHHHHHHH-CCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC--CChHHHHHHHHHHHHhCCCeEec
Q 023801 24 VLIEPTSGNTGIGLAFMAAA-KQYRLIITMPASMSLERRIILRAFGAELVLTDPA--KGMKGAVQKAEEILAKTPNAYML 100 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~-~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~ 100 (277)
.|+..++++.+..+++.+-. -| + .|+++.-.-..-...++.+|++++.++-. .++....+...+........+++
T Consensus 94 ~I~it~Gs~~al~~~~~~l~~~g-d-~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l 171 (388)
T PRK07366 94 EVLPLIGSQEGTAHLPLAVLNPG-D-FALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLAQARLMVL 171 (388)
T ss_pred eEEECCCcHHHHHHHHHHhCCCC-C-EEEEcCCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhcccceEEEE
Confidence 36767777887776655421 23 2 34444444444456678899999988632 12221111222222223356777
Q ss_pred CCCCCCcc
Q 023801 101 QQFENPAN 108 (277)
Q Consensus 101 ~~~~~~~~ 108 (277)
+..+||..
T Consensus 172 ~~p~NPTG 179 (388)
T PRK07366 172 SYPHNPTT 179 (388)
T ss_pred eCCCCCCC
Confidence 76667765
No 306
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=55.81 E-value=78 Score=28.41 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=38.0
Q ss_pred cEEEeeCCc--hHHHHHHHHHHHCCCeEEEEeCCCCCH--HHHH----HHHHcCCEEEEeC
Q 023801 23 SVLIEPTSG--NTGIGLAFMAAAKQYRLIITMPASMSL--ERRI----ILRAFGAELVLTD 75 (277)
Q Consensus 23 ~~vv~aSsG--N~g~a~A~aa~~~Gl~~~vvvp~~~~~--~~~~----~~~~~Ga~v~~~~ 75 (277)
.+|.-...+ |.++|+...++++|++++++-|+...+ ..+. ..+..|+++...+
T Consensus 157 l~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK12562 157 MTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTE 217 (334)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 345555553 899999999999999999999986432 2222 2355788887765
No 307
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=55.74 E-value=1e+02 Score=26.96 Aligned_cols=58 Identities=22% Similarity=0.245 Sum_probs=38.8
Q ss_pred CCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCC-CHHHHHHHHHcCCEEEE
Q 023801 16 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVL 73 (277)
Q Consensus 16 g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~-~~~~~~~~~~~Ga~v~~ 73 (277)
+.+.+|.+.+|...+|..|.+++..|+.+|.++++...... -..+...++.+|++-++
T Consensus 142 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~ 200 (341)
T cd08290 142 VKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVL 200 (341)
T ss_pred cccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEE
Confidence 45677755555556799999999999999988766654321 11455555677775443
No 308
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=55.60 E-value=1.2e+02 Score=25.84 Aligned_cols=49 Identities=29% Similarity=0.271 Sum_probs=37.0
Q ss_pred CCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023801 20 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 71 (277)
Q Consensus 20 ~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v 71 (277)
+|.+.++...+|..|.+++..|+.+|.+.+...+ .+.+...++.+|+..
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~ 180 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVG---SPARAEGLRELGAAE 180 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcE
Confidence 4656677777799999999999999988554432 456778888888863
No 309
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=55.37 E-value=71 Score=28.32 Aligned_cols=38 Identities=16% Similarity=0.080 Sum_probs=29.6
Q ss_pred CCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCC
Q 023801 20 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS 57 (277)
Q Consensus 20 ~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~ 57 (277)
.|.+..+..-.+|.++|+...++++|+.++++-|...+
T Consensus 152 ~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~ 189 (311)
T PRK14804 152 NQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAK 189 (311)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCcc
Confidence 34343444445899999999999999999999998854
No 310
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=55.28 E-value=1.4e+02 Score=25.79 Aligned_cols=53 Identities=26% Similarity=0.334 Sum_probs=34.6
Q ss_pred cCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023801 15 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 71 (277)
Q Consensus 15 ~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v 71 (277)
.+.+++|.. |+...+|..|.+++..|+..|.+.++..+ +..+++.++.+|++.
T Consensus 155 ~~~~~~g~~-vli~g~g~~g~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~ 207 (336)
T cd08276 155 LGPLKPGDT-VLVQGTGGVSLFALQFAKAAGARVIATSS---SDEKLERAKALGADH 207 (336)
T ss_pred hcCCCCCCE-EEEECCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCE
Confidence 456777755 44446788899999999988888544432 335555555566543
No 311
>PRK06139 short chain dehydrogenase; Provisional
Probab=55.27 E-value=77 Score=28.15 Aligned_cols=53 Identities=25% Similarity=0.246 Sum_probs=37.2
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEe
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLT 74 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~-~~~~~~~~~~Ga~v~~~ 74 (277)
+..||+..||--|+++|....+.|.+++++...... ......++..|.++..+
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~ 61 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVV 61 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEE
Confidence 367888899999999999999999987766443211 12234566778887554
No 312
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=54.82 E-value=82 Score=26.96 Aligned_cols=54 Identities=28% Similarity=0.399 Sum_probs=38.1
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 71 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v 71 (277)
+.+.+.+|...+|...+|..|.+++..++..|.++.+..+ + .+...++.+|++-
T Consensus 138 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~-~~~~~~~~~g~~~ 191 (326)
T cd08272 138 DRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATAS---S-EKAAFARSLGADP 191 (326)
T ss_pred HhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEec---h-HHHHHHHHcCCCE
Confidence 5677778866666666889999999999999988655432 2 4555556677643
No 313
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=54.59 E-value=87 Score=29.14 Aligned_cols=93 Identities=17% Similarity=0.197 Sum_probs=54.8
Q ss_pred CCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEe
Q 023801 20 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYM 99 (277)
Q Consensus 20 ~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (277)
+| ++++....|+-|+.+|..++.+|.+++++ . ..+.+.......|.++. + .++ ..+. .+.++
T Consensus 211 ~G-k~VlViG~G~IG~~vA~~lr~~Ga~ViV~-d--~dp~ra~~A~~~G~~v~--~----l~e-------al~~-aDVVI 272 (425)
T PRK05476 211 AG-KVVVVAGYGDVGKGCAQRLRGLGARVIVT-E--VDPICALQAAMDGFRVM--T----MEE-------AAEL-GDIFV 272 (425)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHhCCCEEEEE-c--CCchhhHHHHhcCCEec--C----HHH-------HHhC-CCEEE
Confidence 45 56889999999999999999999975554 2 23344444455677642 1 111 1122 24333
Q ss_pred cCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchh
Q 023801 100 LQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGT 140 (277)
Q Consensus 100 ~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~ 140 (277)
... ++ ...+..+.++.+ ++..+++-+|....
T Consensus 273 ~aT-G~-------~~vI~~~~~~~m--K~GailiNvG~~d~ 303 (425)
T PRK05476 273 TAT-GN-------KDVITAEHMEAM--KDGAILANIGHFDN 303 (425)
T ss_pred ECC-CC-------HHHHHHHHHhcC--CCCCEEEEcCCCCC
Confidence 211 11 123445666666 45678888887653
No 314
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=54.36 E-value=1.2e+02 Score=26.42 Aligned_cols=54 Identities=19% Similarity=0.105 Sum_probs=38.3
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEeC
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTD 75 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~--~~~~~~~~~~Ga~v~~~~ 75 (277)
...||+..+|.-|+++|..-.+.|.++++.-..... ......++..|.+++.+.
T Consensus 13 k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 68 (306)
T PRK07792 13 KVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVA 68 (306)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEe
Confidence 367899999999999999999999987665332211 223455667788876664
No 315
>PRK09242 tropinone reductase; Provisional
Probab=54.07 E-value=1.3e+02 Score=25.08 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=25.9
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeC
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 53 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp 53 (277)
++.+|+..+|.-|.++|......|.+++++..
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r 41 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLGADVLIVAR 41 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 36788888999999999999888987666543
No 316
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=53.99 E-value=47 Score=26.68 Aligned_cols=161 Identities=17% Similarity=0.166 Sum_probs=73.9
Q ss_pred EEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHH-HHHHHH-cCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCC
Q 023801 25 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLER-RIILRA-FGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 102 (277)
Q Consensus 25 vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~-~~~~~~-~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 102 (277)
|..-.+|..|+++|+.+...|++++++-+......+ ...++. +... .. .+ ...+ ..+..... ...+...
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~-~~-~~--~~~~--~~~~~~~~---~i~~~~d 72 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRL-VR-KG--RLSQ--EEADAALA---RISFTTD 72 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHH-HH-TT--TTTH--HHHHHHHH---TEEEESS
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhh-hh-hc--cchh--hhhhhhhh---hcccccC
Confidence 566678999999999999999999999664321111 111111 0000 00 00 0000 11111111 1122211
Q ss_pred CCC---Ccchhh---hhhchHHHHHhhhCC--CCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEEecCCCCccCCCCCC
Q 023801 103 FEN---PANPKI---HYETTGPELWKGSGG--RIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPG 174 (277)
Q Consensus 103 ~~~---~~~~~~---g~~t~~~Ei~~Q~~~--~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~~~~~~ 174 (277)
+.. -+..++ .--.+=.|+++++.. .+|.|++...++=.+.=++..+. ..-|++|.-....+.+
T Consensus 73 l~~~~~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~---~p~R~ig~Hf~~P~~~------ 143 (180)
T PF02737_consen 73 LEEAVDADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALS---RPERFIGMHFFNPPHL------ 143 (180)
T ss_dssp GGGGCTESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSS---TGGGEEEEEE-SSTTT------
T ss_pred HHHHhhhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccC---cCceEEEEeccccccc------
Confidence 111 011111 011222355555532 58999999988887777766654 3347888865543211
Q ss_pred CcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCC
Q 023801 175 PHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGL 219 (277)
Q Consensus 175 ~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi 219 (277)
...++=+ .-.-++++.++.+..|.++.|.
T Consensus 144 ~~lVEvv----------------~~~~T~~~~~~~~~~~~~~~gk 172 (180)
T PF02737_consen 144 MPLVEVV----------------PGPKTSPETVDRVRALLRSLGK 172 (180)
T ss_dssp --EEEEE----------------E-TTS-HHHHHHHHHHHHHTT-
T ss_pred CceEEEe----------------CCCCCCHHHHHHHHHHHHHCCC
Confidence 0011100 0112567888888888887664
No 317
>PRK10490 sensor protein KdpD; Provisional
Probab=53.93 E-value=1.6e+02 Score=30.31 Aligned_cols=107 Identities=9% Similarity=0.034 Sum_probs=60.8
Q ss_pred cEEEeeCCchHH----HHHHHHHHHCCCeEEEE-eCC----CCCH-------HHHHHHHHcCCEEEEeCCCCChHHHHHH
Q 023801 23 SVLIEPTSGNTG----IGLAFMAAAKQYRLIIT-MPA----SMSL-------ERRIILRAFGAELVLTDPAKGMKGAVQK 86 (277)
Q Consensus 23 ~~vv~aSsGN~g----~a~A~aa~~~Gl~~~vv-vp~----~~~~-------~~~~~~~~~Ga~v~~~~~~~~~~~~~~~ 86 (277)
+.+|+-|++-++ +..+-.|.+++-+.+++ |-. ..+. ..+++.+.+||+++.+.+. +.. +.
T Consensus 252 riLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~~~~~~~~-dva---~~ 327 (895)
T PRK10490 252 AILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSALRLAQELGAETATLSDP-AEE---KA 327 (895)
T ss_pred eEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC-CHH---HH
Confidence 356666666665 44455666778776644 321 1111 1244667899999888763 322 34
Q ss_pred HHHHHHhCC-CeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecC
Q 023801 87 AEEILAKTP-NAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIG 136 (277)
Q Consensus 87 a~~~~~~~~-~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG 136 (277)
..+++++.+ ....+...... .| ....++...+++.. +.+|..|+|..
T Consensus 328 i~~~A~~~~vt~IViG~s~~~-~~-~~~~s~~~~l~r~~-~~idi~iv~~~ 375 (895)
T PRK10490 328 VLRYAREHNLGKIIIGRRASR-RW-WRRESFADRLARLG-PDLDLVIVALD 375 (895)
T ss_pred HHHHHHHhCCCEEEECCCCCC-CC-ccCCCHHHHHHHhC-CCCCEEEEeCC
Confidence 445666552 22344443322 11 22346778888887 67898888754
No 318
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=53.33 E-value=1e+02 Score=27.41 Aligned_cols=52 Identities=12% Similarity=0.036 Sum_probs=32.8
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
.|+..++...+..+++.+- +.-.-.|+++.-.-..-....+..|++++.++.
T Consensus 78 ~i~it~G~~~~l~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 129 (351)
T PRK14807 78 NIFVGNGSDEIIHLIMLAF-INKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKL 129 (351)
T ss_pred cEEEecCHHHHHHHHHHHh-cCCCCEEEEeCCChHHHHHHHHHcCCeEEEeec
Confidence 4676676677766665543 222234555554444556667889999999874
No 319
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=53.27 E-value=57 Score=29.84 Aligned_cols=52 Identities=19% Similarity=0.172 Sum_probs=34.9
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCC--eEEEEeCCCCCHHHHHHHHHc
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQY--RLIITMPASMSLERRIILRAF 67 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl--~~~vvvp~~~~~~~~~~~~~~ 67 (277)
++..+++|.+.+|...+|--|..+...|+.+|. ..++++ +.++.|++..+.+
T Consensus 169 ~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~--~~~~~r~~~a~~~ 222 (410)
T cd08238 169 HRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVT--DVNDERLARAQRL 222 (410)
T ss_pred hhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEE--cCCHHHHHHHHHh
Confidence 345678886656665679999999999998875 223332 3355677777765
No 320
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=53.22 E-value=1.2e+02 Score=24.35 Aligned_cols=70 Identities=16% Similarity=0.148 Sum_probs=41.5
Q ss_pred HHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCc
Q 023801 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTG 138 (277)
Q Consensus 63 ~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~G 138 (277)
....+|.+++.-+. .+....++.+.+.......++++.+.|.|.... .+-.++++++ ...+.+++|.-.|
T Consensus 60 ~~~~~~v~~i~~~~-~G~~~si~~al~~~~~~~~~vlv~~~D~P~l~~----~~i~~l~~~~-~~~~~vi~p~~~G 129 (195)
T TIGR03552 60 AARNLGAPVLRDPG-PGLNNALNAALAEAREPGGAVLILMADLPLLTP----RELKRLLAAA-TEGDVVIAPDRGG 129 (195)
T ss_pred HHHhcCCEEEecCC-CCHHHHHHHHHHHhhccCCeEEEEeCCCCCCCH----HHHHHHHHhc-ccCCEEEEecCCC
Confidence 34566777655443 255666766655543322467888888887622 2223555555 3467888998665
No 321
>PRK06436 glycerate dehydrogenase; Provisional
Probab=53.20 E-value=1.6e+02 Score=25.94 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=66.5
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 102 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 102 (277)
++|-.-.-||-|+++|..++.+|++++++-+...+ .|.... .. +. .++.++- +...++-
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~---------~~~~~~-~~---~l-------~ell~~a-Div~~~l 181 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN---------DGISSI-YM---EP-------EDIMKKS-DFVLISL 181 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc---------cCcccc-cC---CH-------HHHHhhC-CEEEECC
Confidence 56888899999999999999999998887654211 122111 11 11 2333333 4444433
Q ss_pred CCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHH--HHHHHhhcCCCcEEEEEec
Q 023801 103 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITG--AGKFLKEKNPNIKLYGIEP 162 (277)
Q Consensus 103 ~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aG--i~~~~~~~~~~~~vigV~~ 162 (277)
-.++. -+..+..+.++++ ++..+++-+|.|+..-- +..++++ ....-.+.++
T Consensus 182 p~t~~----T~~li~~~~l~~m--k~ga~lIN~sRG~~vd~~aL~~aL~~--g~i~~a~lDV 235 (303)
T PRK06436 182 PLTDE----TRGMINSKMLSLF--RKGLAIINVARADVVDKNDMLNFLRN--HNDKYYLSDV 235 (303)
T ss_pred CCCch----hhcCcCHHHHhcC--CCCeEEEECCCccccCHHHHHHHHHc--CCceEEEEcc
Confidence 33332 2345567888888 47899999999987643 3344443 2233444444
No 322
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=53.14 E-value=1.3e+02 Score=24.88 Aligned_cols=49 Identities=22% Similarity=0.164 Sum_probs=37.2
Q ss_pred hhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEEecCC
Q 023801 113 YETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTE 164 (277)
Q Consensus 113 ~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV~~~~ 164 (277)
|...+.++-+++ .+...+|++-|++|.+-.+.++.++.+ -+++|+-|..
T Consensus 32 ~~~~a~~lg~~l-a~~g~~V~tGG~~GiMea~~~gA~~~g--g~~vGi~p~~ 80 (205)
T COG1611 32 YYELARELGREL-AKRGLLVITGGGPGVMEAVARGALEAG--GLVVGILPGL 80 (205)
T ss_pred HHHHHHHHHHHH-HhCCcEEEeCCchhhhhHHHHHHHHcC--CeEEEecCCC
Confidence 677777777777 334478888888899989999998755 5899997644
No 323
>PLN02306 hydroxypyruvate reductase
Probab=53.13 E-value=1.1e+02 Score=27.99 Aligned_cols=130 Identities=18% Similarity=0.164 Sum_probs=72.7
Q ss_pred cEEEeeCCchHHHHHHHHHH-HCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC-ChHHHHHHHHHHHHhCCCeEec
Q 023801 23 SVLIEPTSGNTGIGLAFMAA-AKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK-GMKGAVQKAEEILAKTPNAYML 100 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~-~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~ 100 (277)
++|-.-..|+-|+.+|..++ .+|+++..+=|.. +.........+|..+...+... .+. ....-.++.++- +...+
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~L~ell~~s-DiV~l 242 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ-STRLEKFVTAYGQFLKANGEQPVTWK-RASSMEEVLREA-DVISL 242 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCC-chhhhhhhhhhccccccccccccccc-ccCCHHHHHhhC-CEEEE
Confidence 57888999999999999974 8999987775542 2221222234443322111100 000 000122333443 44444
Q ss_pred CCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHH--HHHHHHhhcCCCcEEEEEecC
Q 023801 101 QQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTIT--GAGKFLKEKNPNIKLYGIEPT 163 (277)
Q Consensus 101 ~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~a--Gi~~~~~~~~~~~~vigV~~~ 163 (277)
+-- .+ .+-+.-+..|.+++| +++.+++-+|-|+++- .+..+++. ..+.-.+.+..
T Consensus 243 h~P---lt-~~T~~lin~~~l~~M--K~ga~lIN~aRG~lVDe~AL~~AL~s--g~i~gAaLDVf 299 (386)
T PLN02306 243 HPV---LD-KTTYHLINKERLALM--KKEAVLVNASRGPVIDEVALVEHLKA--NPMFRVGLDVF 299 (386)
T ss_pred eCC---CC-hhhhhhcCHHHHHhC--CCCeEEEECCCccccCHHHHHHHHHh--CCeeEEEEeCC
Confidence 322 22 233566778989998 5899999999999874 44445543 22444455543
No 324
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=53.02 E-value=33 Score=24.05 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=29.7
Q ss_pred HHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEEecCCCC
Q 023801 120 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESP 166 (277)
Q Consensus 120 i~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~ 166 (277)
.+++.-...|.+|+-...|..+--++-.++.+..+|.|+.|+..+.-
T Consensus 4 ~~~~~~~~~d~~I~i~A~GivvR~iap~l~dK~~DPaVvvvde~g~~ 50 (84)
T PF11760_consen 4 LLRELFRRYDAIIFIMAAGIVVRAIAPLLKDKDTDPAVVVVDEDGRF 50 (84)
T ss_dssp -HHHHCCC-SEEEEES-HHHHHHHHHHH---TTT--EEEEE-TT--E
T ss_pred HHHHHHcCCCeEEEEeCcHHHHHHhChhhcccCCCCCEEEEeCCCCE
Confidence 34444456899999988999999999899988889999999988874
No 325
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=52.96 E-value=1.1e+02 Score=27.48 Aligned_cols=52 Identities=17% Similarity=0.006 Sum_probs=32.2
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
.|+..+++..+..++..+- ..-.-.|++|.-.-..-....+.+|++++.++-
T Consensus 93 ~vi~t~G~~~~l~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~ 144 (383)
T TIGR03540 93 EVLSLIGSKEGIAHIPLAF-VNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPL 144 (383)
T ss_pred eEEECCCcHHHHHHHHHHh-CCCCCEEEEeCCCCcchHHHHHhcCCEEEEEec
Confidence 4666677777777766543 222234555554444445567889999988763
No 326
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=52.92 E-value=1.4e+02 Score=27.04 Aligned_cols=48 Identities=13% Similarity=0.103 Sum_probs=34.6
Q ss_pred EeeCCchHHHHHHHHHH---HCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 26 IEPTSGNTGIGLAFMAA---AKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 26 v~aSsGN~g~a~A~aa~---~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
+..+++.+|..++..+- .-| -.|++|.-.-+.-...++.+|++++.++
T Consensus 98 ~iT~Ga~~al~~~~~~l~~~~pG--d~Vlv~~P~y~~~~~~~~~~g~~~v~v~ 148 (396)
T PRK09257 98 VQTPGGTGALRVGADFLKRAFPD--AKVWVSDPTWPNHRAIFEAAGLEVKTYP 148 (396)
T ss_pred EecCCccHHHHHHHHHHHHhCCC--CeEEECCCCcccHHHHHHHcCCcEEEEe
Confidence 77777888888886432 234 3566676666666788889999999886
No 327
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=52.89 E-value=1.1e+02 Score=28.48 Aligned_cols=53 Identities=19% Similarity=0.047 Sum_probs=39.2
Q ss_pred EEEeeCCchHHHHHHHHHHH------CCCe--EEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 24 VLIEPTSGNTGIGLAFMAAA------KQYR--LIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~------~Gl~--~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
.++..+||..+..+|+.+.. .+++ -.|++|..+.......+..+|++++.++-
T Consensus 80 ~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdv 140 (438)
T PRK15407 80 YALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDV 140 (438)
T ss_pred eEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEec
Confidence 57778888888888776542 1332 45778887777778888889999998874
No 328
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=52.82 E-value=1.3e+02 Score=26.94 Aligned_cols=45 Identities=9% Similarity=0.047 Sum_probs=33.3
Q ss_pred chHHHHHHHHHHHCCCeEEEEeC-CCC--CHHHHH----HHHHcCCEEEEeC
Q 023801 31 GNTGIGLAFMAAAKQYRLIITMP-ASM--SLERRI----ILRAFGAELVLTD 75 (277)
Q Consensus 31 GN~g~a~A~aa~~~Gl~~~vvvp-~~~--~~~~~~----~~~~~Ga~v~~~~ 75 (277)
+|..+|++..+.++|++++++.| +.. ++.-+. ..+..|.++....
T Consensus 185 ~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 236 (335)
T PRK04523 185 TAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSH 236 (335)
T ss_pred cHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 48999999999999999999999 643 222232 2356788888775
No 329
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=52.69 E-value=1.2e+02 Score=25.63 Aligned_cols=51 Identities=33% Similarity=0.444 Sum_probs=35.9
Q ss_pred cCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCC
Q 023801 15 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA 69 (277)
Q Consensus 15 ~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga 69 (277)
.+.+.+|.+.+|...+|..|.+++..++..|++.+++.+.. +...++.+|+
T Consensus 139 ~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~----~~~~~~~~g~ 189 (309)
T cd05289 139 LGGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA----NADFLRSLGA 189 (309)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch----hHHHHHHcCC
Confidence 34577776655655579999999999999999866654322 4555566775
No 330
>PRK08862 short chain dehydrogenase; Provisional
Probab=52.60 E-value=1.3e+02 Score=24.82 Aligned_cols=52 Identities=13% Similarity=0.039 Sum_probs=34.1
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEe
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLT 74 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~-~~~~~~~~~~Ga~v~~~ 74 (277)
..+|+..++.-|+++|....+.|.+++++-..... ....+.++..|.+++.+
T Consensus 7 ~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~ 59 (227)
T PRK08862 7 IILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSF 59 (227)
T ss_pred EEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEE
Confidence 67888888889999999999999986665332111 11233455566665443
No 331
>PRK12414 putative aminotransferase; Provisional
Probab=52.55 E-value=1.1e+02 Score=27.65 Aligned_cols=52 Identities=17% Similarity=-0.036 Sum_probs=31.0
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
.++..++|..+..++..+- +.=.-.|+++.-.-..-...++.+|++++.++-
T Consensus 92 ~i~it~g~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 143 (384)
T PRK12414 92 EVTVIASASEGLYAAISAL-VHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKL 143 (384)
T ss_pred cEEEECChHHHHHHHHHHh-cCCCCEEEEeCCCccchHHHHHHcCCEEEEEec
Confidence 4777778888877666543 221123444443333445556778999988864
No 332
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=52.54 E-value=98 Score=27.77 Aligned_cols=83 Identities=12% Similarity=0.024 Sum_probs=43.4
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCCC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQF 103 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 103 (277)
.|+..+++.++..++..+- ..=.-.|+++.-....-...++.+|.+++.++...++.-..+...+...+....++++..
T Consensus 90 ~i~~t~G~~~~l~~~~~~~-~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p 168 (371)
T PRK05166 90 RIILGNGSEDLIAVICRAV-LRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVTPDLGFDLDALCAAVARAPRMLMFSNP 168 (371)
T ss_pred HEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHhhhcCCCEEEEeCC
Confidence 4676677777776655443 222234555554445556677889999998864221110111122222233355666544
Q ss_pred CCCc
Q 023801 104 ENPA 107 (277)
Q Consensus 104 ~~~~ 107 (277)
.||.
T Consensus 169 ~NPt 172 (371)
T PRK05166 169 SNPV 172 (371)
T ss_pred CCCC
Confidence 5554
No 333
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=52.53 E-value=1.7e+02 Score=25.89 Aligned_cols=113 Identities=19% Similarity=0.163 Sum_probs=72.6
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 102 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 102 (277)
++|..-.-||-|+.+|-.++.+|+++..+=|.... ...+.+ .+ ++ .++.++- +...++-
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~-------~~~~~~--~~----~l-------~ell~~s-Dvv~lh~ 204 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKN-------KNEEYE--RV----SL-------EELLKTS-DIISIHA 204 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccc-------cccCce--ee----cH-------HHHhhcC-CEEEEeC
Confidence 57888899999999999999999998887653211 011111 11 11 2333333 4444332
Q ss_pred CCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhH--HHHHHHHhhcCCCcEEEEEecCCC
Q 023801 103 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTI--TGAGKFLKEKNPNIKLYGIEPTES 165 (277)
Q Consensus 103 ~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~--aGi~~~~~~~~~~~~vigV~~~~~ 165 (277)
-.++ +-+.-+..|.+++| +++.+++-+|-|+++ ..+..+++. ..+. .+.++...
T Consensus 205 Plt~----~T~~li~~~~~~~M--k~~a~lIN~aRG~vVDe~AL~~AL~~--g~i~-AaLDV~~~ 260 (311)
T PRK08410 205 PLNE----KTKNLIAYKELKLL--KDGAILINVGRGGIVNEKDLAKALDE--KDIY-AGLDVLEK 260 (311)
T ss_pred CCCc----hhhcccCHHHHHhC--CCCeEEEECCCccccCHHHHHHHHHc--CCeE-EEEecCCC
Confidence 2222 23567888999998 589999999999986 356666664 3466 77776544
No 334
>PRK08303 short chain dehydrogenase; Provisional
Probab=52.46 E-value=1.6e+02 Score=25.70 Aligned_cols=72 Identities=17% Similarity=0.116 Sum_probs=44.2
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCC-----------CHHHHHHHHHcCCEEEEe--CCCCChHHHHHHHH
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-----------SLERRIILRAFGAELVLT--DPAKGMKGAVQKAE 88 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~-----------~~~~~~~~~~~Ga~v~~~--~~~~~~~~~~~~a~ 88 (277)
...||+..++--|.++|..-.+.|.+++++-.... -....+.++..|.+++.+ |- .+.++..+...
T Consensus 9 k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv-~~~~~v~~~~~ 87 (305)
T PRK08303 9 KVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDH-LVPEQVRALVE 87 (305)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCC-CCHHHHHHHHH
Confidence 36788888888999999999999998776643311 112234556667766544 32 24444444555
Q ss_pred HHHHhC
Q 023801 89 EILAKT 94 (277)
Q Consensus 89 ~~~~~~ 94 (277)
+..++.
T Consensus 88 ~~~~~~ 93 (305)
T PRK08303 88 RIDREQ 93 (305)
T ss_pred HHHHHc
Confidence 554443
No 335
>CHL00194 ycf39 Ycf39; Provisional
Probab=52.37 E-value=66 Score=28.14 Aligned_cols=50 Identities=26% Similarity=0.387 Sum_probs=34.8
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
+.+|+..+|.-|..++-.....|.+++++.... .+...+...|.+++..+
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~---~~~~~l~~~~v~~v~~D 51 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNL---RKASFLKEWGAELVYGD 51 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcCh---HHhhhHhhcCCEEEECC
Confidence 468999999999999999999999988887542 12222233455555443
No 336
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=52.28 E-value=1.2e+02 Score=26.99 Aligned_cols=84 Identities=14% Similarity=0.111 Sum_probs=46.4
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHH-HhCCCeEecCC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEIL-AKTPNAYMLQQ 102 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~ 102 (277)
.|+..++++.+..++..+- ..-.-.|++|.-....-....+.+|++++.++-..++.-..+...+.. .......+++.
T Consensus 83 ~I~~t~G~~~~i~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~~ 161 (356)
T PRK04870 83 DVLLGNGSDELIQLLALAC-AKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAEHRPALVFLAY 161 (356)
T ss_pred cEEEcCCHHHHHHHHHHHh-cCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhcCCCCEEEEcC
Confidence 4677777777777665443 222235666665555667778899999999874222211112222222 22335666654
Q ss_pred CCCCcc
Q 023801 103 FENPAN 108 (277)
Q Consensus 103 ~~~~~~ 108 (277)
..||..
T Consensus 162 p~NPtG 167 (356)
T PRK04870 162 PNNPTG 167 (356)
T ss_pred CCCCCC
Confidence 456543
No 337
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=52.01 E-value=1.3e+02 Score=24.71 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=38.1
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCH--HHHHHHHHcCCEEEEeC
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRIILRAFGAELVLTD 75 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~--~~~~~~~~~Ga~v~~~~ 75 (277)
.+.+|+..+|.-|+.+|..-...|.+++++.....+. .....++..|.++..+.
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVK 60 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 3678999999999999999999999877654333221 22345566787776654
No 338
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=52.00 E-value=94 Score=27.14 Aligned_cols=33 Identities=9% Similarity=0.118 Sum_probs=25.1
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS 55 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~ 55 (277)
++++.-.+|-.++|++++....|++-+.++.++
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 456777778889999999999998766555544
No 339
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=51.96 E-value=1.2e+02 Score=25.18 Aligned_cols=54 Identities=17% Similarity=0.082 Sum_probs=35.9
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 75 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~-~~~~~~~~~~Ga~v~~~~ 75 (277)
++.+|+..+|.-|.++|......|.+++++-..... ......++..|.++..+.
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~ 65 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALA 65 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEE
Confidence 377899999999999999999999986654332111 112334555576666553
No 340
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=51.87 E-value=87 Score=26.05 Aligned_cols=110 Identities=15% Similarity=0.136 Sum_probs=59.1
Q ss_pred HHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCH---HHHHHHHHcCC-EEEEeCCCCChHH
Q 023801 7 SMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL---ERRIILRAFGA-ELVLTDPAKGMKG 82 (277)
Q Consensus 7 ~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~---~~~~~~~~~Ga-~v~~~~~~~~~~~ 82 (277)
+++.++++.=.++||. .|.+-.+|. |...|..|+..| .|+.=+..++ .=.+.++.+|- +|++.-+..
T Consensus 59 ~~vA~m~~~L~~~~g~-~VLEIGtGs-GY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG---- 129 (209)
T COG2518 59 HMVARMLQLLELKPGD-RVLEIGTGS-GYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRHGDG---- 129 (209)
T ss_pred HHHHHHHHHhCCCCCC-eEEEECCCc-hHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCc----
Confidence 3555555555677884 577777763 677777887777 3333232221 12333666777 454443311
Q ss_pred HHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCc
Q 023801 83 AVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTG 138 (277)
Q Consensus 83 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~G 138 (277)
..+|.-..|||--.. .++-.++=.-+++||. .--..|+|+|++
T Consensus 130 -----------~~G~~~~aPyD~I~V-taaa~~vP~~Ll~QL~-~gGrlv~PvG~~ 172 (209)
T COG2518 130 -----------SKGWPEEAPYDRIIV-TAAAPEVPEALLDQLK-PGGRLVIPVGSG 172 (209)
T ss_pred -----------ccCCCCCCCcCEEEE-eeccCCCCHHHHHhcc-cCCEEEEEEccC
Confidence 013333345543222 2333444456688983 345788899843
No 341
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=51.83 E-value=80 Score=28.50 Aligned_cols=54 Identities=30% Similarity=0.442 Sum_probs=38.4
Q ss_pred CCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 16 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 16 g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
+.+++|.+.+|. .+|.-|.+++..|+.+|...++++.. ++.|...++.+|++-+
T Consensus 199 ~~~~~g~~VlV~-g~g~vG~~ai~lA~~~G~~~vi~~~~--~~~~~~~~~~~g~~~~ 252 (384)
T cd08265 199 GGFRPGAYVVVY-GAGPIGLAAIALAKAAGASKVIAFEI--SEERRNLAKEMGADYV 252 (384)
T ss_pred CCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCCEE
Confidence 577888666666 67999999999999999854444422 3347777788887443
No 342
>PRK12937 short chain dehydrogenase; Provisional
Probab=51.75 E-value=1.3e+02 Score=24.60 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=38.2
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEeC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTD 75 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~--~~~~~~~~~~Ga~v~~~~ 75 (277)
+.+|+..+|.-|+++|..-.+.|.+++++.....+ ......++.++.++..+.
T Consensus 7 ~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (245)
T PRK12937 7 VAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQ 61 (245)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 67899999999999999999999987766543321 122345566788777654
No 343
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=51.73 E-value=1.5e+02 Score=25.13 Aligned_cols=53 Identities=34% Similarity=0.372 Sum_probs=34.8
Q ss_pred cCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 15 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 15 ~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
...+.++.+.+|...+|..|.+++..++..|.+.+++.+ +..+...++.+|++
T Consensus 134 ~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~---~~~~~~~~~~~g~~ 186 (323)
T cd05276 134 LGGLKAGETVLIHGGASGVGTAAIQLAKALGARVIATAG---SEEKLEACRALGAD 186 (323)
T ss_pred hcCCCCCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHcCCC
Confidence 345667766667666788888888888888887544422 23445555556653
No 344
>PRK07478 short chain dehydrogenase; Provisional
Probab=51.62 E-value=1.4e+02 Score=24.79 Aligned_cols=72 Identities=17% Similarity=0.111 Sum_probs=43.2
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCH-HHHHHHHHcCCEEEEeCC-CCChHHHHHHHHHHHHhC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILRAFGAELVLTDP-AKGMKGAVQKAEEILAKT 94 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~-~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~~~~~~ 94 (277)
+.+|+..+|.-|.++|..-.+.|.+++++....... .-...++..|.++..+.. -.+.++..+...+..++.
T Consensus 8 ~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (254)
T PRK07478 8 VAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERF 81 (254)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 678888999999999999999999876654322111 112345566766655432 123344444444444443
No 345
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=51.47 E-value=62 Score=29.00 Aligned_cols=52 Identities=19% Similarity=0.216 Sum_probs=37.2
Q ss_pred EEEeeCCc--hHHHHHHHHHHHCCCeEEEEeCCCCCH--HHHH----HHHHcCCEEEEeC
Q 023801 24 VLIEPTSG--NTGIGLAFMAAAKQYRLIITMPASMSL--ERRI----ILRAFGAELVLTD 75 (277)
Q Consensus 24 ~vv~aSsG--N~g~a~A~aa~~~Gl~~~vvvp~~~~~--~~~~----~~~~~Ga~v~~~~ 75 (277)
+|.-...+ |.++|+..+++++|++++++.|+...+ ..+. ..+..|+++...+
T Consensus 158 ~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK01713 158 SYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTD 217 (334)
T ss_pred EEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 45555554 689999999999999999999986432 2221 2245788887775
No 346
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=51.38 E-value=1.2e+02 Score=25.39 Aligned_cols=54 Identities=17% Similarity=0.023 Sum_probs=36.3
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 75 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~-~~~~~~~~~~Ga~v~~~~ 75 (277)
.+.+|+..+|.-|.++|......|.+++++-..... ......++..|.+++.+.
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYV 65 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 367999999999999999999999987665322111 112334555677765543
No 347
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=51.38 E-value=1.8e+02 Score=25.90 Aligned_cols=51 Identities=25% Similarity=0.290 Sum_probs=32.7
Q ss_pred CCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCC
Q 023801 16 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA 69 (277)
Q Consensus 16 g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga 69 (277)
+.+.++.+.+|. .+|..|.+++..|+.+|.+.++++.. ++.+...++.+|+
T Consensus 183 ~~~~~g~~VlI~-g~g~vG~~~~~lak~~G~~~vi~~~~--s~~~~~~~~~~g~ 233 (367)
T cd08263 183 ADVRPGETVAVI-GVGGVGSSAIQLAKAFGASPIIAVDV--RDEKLAKAKELGA 233 (367)
T ss_pred ccCCCCCEEEEE-CCcHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCC
Confidence 445666565665 57889999999999988873333322 3345555555665
No 348
>PRK12831 putative oxidoreductase; Provisional
Probab=51.24 E-value=75 Score=29.80 Aligned_cols=53 Identities=17% Similarity=0.072 Sum_probs=39.7
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCC---C--CHHHHHHHHHcCCEEEEeC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS---M--SLERRIILRAFGAELVLTD 75 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~---~--~~~~~~~~~~~Ga~v~~~~ 75 (277)
+.|+.-.+||.|.-+|..+.++|.+++++.... . ....++.++..|.+++...
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~~ 339 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDLLT 339 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEecc
Confidence 469999999999999999999999988876532 1 2234455667787776543
No 349
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=51.08 E-value=1e+02 Score=24.52 Aligned_cols=72 Identities=18% Similarity=0.128 Sum_probs=45.7
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCC-----CCHHHHHHHHHcCCEEEEeCC-CCChHHHHHHHHHHHHhC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-----MSLERRIILRAFGAELVLTDP-AKGMKGAVQKAEEILAKT 94 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~-----~~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~~~~~~ 94 (277)
+-||+...|..|..+|..=...+-.-++++... .....++.++..|++|....- ..+.++..+...++.++.
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~ 79 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRF 79 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTS
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhcc
Confidence 457888899999999998888886656665444 233568888999999987753 123344334444443333
No 350
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=51.01 E-value=1.2e+02 Score=27.36 Aligned_cols=54 Identities=26% Similarity=0.286 Sum_probs=37.4
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHc-CCE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAF-GAE 70 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~-Ga~ 70 (277)
+.+.+.+|.+.+|. .+|-.|.+++..|+..|.+.++++.. ++.+.+.++.+ |++
T Consensus 178 ~~~~~~~g~~VlV~-g~G~vG~~~~~la~~~g~~~vi~~~~--~~~~~~~~~~~~~~~ 232 (386)
T cd08283 178 ELAEVKPGDTVAVW-GCGPVGLFAARSAKLLGAERVIAIDR--VPERLEMARSHLGAE 232 (386)
T ss_pred hhccCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCcE
Confidence 45567777665555 57888999999999999864444432 35677777777 554
No 351
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=50.85 E-value=1.4e+02 Score=24.44 Aligned_cols=53 Identities=19% Similarity=0.183 Sum_probs=37.0
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEeC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTD 75 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~--~~~~~~~~~~Ga~v~~~~ 75 (277)
+.+|+..+|.-|.+++....+.|.+++++.....+ ......++..+.++..+.
T Consensus 7 ~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (248)
T PRK05557 7 VALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQ 61 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEE
Confidence 67899999999999999998899987666543321 122334455677777664
No 352
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=50.83 E-value=1e+02 Score=27.29 Aligned_cols=85 Identities=14% Similarity=0.080 Sum_probs=51.5
Q ss_pred HHHHHHHHCCCeEEEEe---CCCCC-HH----HHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCC-eEecCCCCCC
Q 023801 36 GLAFMAAAKQYRLIITM---PASMS-LE----RRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPN-AYMLQQFENP 106 (277)
Q Consensus 36 a~A~aa~~~Gl~~~vvv---p~~~~-~~----~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~ 106 (277)
+..|.++++|++..-++ |+..+ +. -++.++..+.+++++.... . -+.++.++++.+- ...++|+.+.
T Consensus 212 af~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~--~--~~~~~~la~e~g~~v~~ldpl~~~ 287 (311)
T PRK09545 212 AYGYFEKHYGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQF--R--PAVIESVAKGTSVRMGTLDPLGTN 287 (311)
T ss_pred hHHHHHHhCCCceeeeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEecCCC--C--hHHHHHHHHhcCCeEEEecccccc
Confidence 78999999999987554 33222 22 3567788999999998632 2 2345555565532 2345676644
Q ss_pred cch-hhhhhchHHHHHhhh
Q 023801 107 ANP-KIHYETTGPELWKGS 124 (277)
Q Consensus 107 ~~~-~~g~~t~~~Ei~~Q~ 124 (277)
... ...|..+..+..+++
T Consensus 288 ~~~~~~~Y~~~m~~n~~~l 306 (311)
T PRK09545 288 IKLGKDSYSEFLSQLANQY 306 (311)
T ss_pred ccCCHhHHHHHHHHHHHHH
Confidence 321 135666666665554
No 353
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=50.80 E-value=1.1e+02 Score=27.24 Aligned_cols=51 Identities=20% Similarity=0.106 Sum_probs=36.0
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
.|+..+++..+..++..+-.-| + .|++|.-....-...++.+|++++.++-
T Consensus 76 ~I~it~G~~~~i~~~~~~l~~g-~-~vlv~~P~y~~~~~~~~~~g~~~~~v~~ 126 (360)
T PRK07392 76 WILPGNGAAELLTWAGRELAQL-R-AVYLITPAFGDYRRALRAFGATVKELPL 126 (360)
T ss_pred hEEECCCHHHHHHHHHHHhCCC-C-eEEEECCCcHHHHHHHHHcCCeEEEEec
Confidence 4777788888887776542223 3 5556666666677888899999998864
No 354
>PRK07831 short chain dehydrogenase; Provisional
Probab=50.77 E-value=1.5e+02 Score=24.82 Aligned_cols=31 Identities=29% Similarity=0.446 Sum_probs=24.0
Q ss_pred CCcEEEeeCCc-hHHHHHHHHHHHCCCeEEEE
Q 023801 21 GESVLIEPTSG-NTGIGLAFMAAAKQYRLIIT 51 (277)
Q Consensus 21 g~~~vv~aSsG-N~g~a~A~aa~~~Gl~~~vv 51 (277)
+.+.+|+..+| .-|.++|......|.+++++
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~ 48 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGARVVIS 48 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCCEEEEE
Confidence 44677777776 69999999999999885554
No 355
>PRK13984 putative oxidoreductase; Provisional
Probab=50.73 E-value=1.2e+02 Score=29.35 Aligned_cols=51 Identities=20% Similarity=0.285 Sum_probs=38.5
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCC--------------C----HHHHHHHHHcCCEEEE
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--------------S----LERRIILRAFGAELVL 73 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~--------------~----~~~~~~~~~~Ga~v~~ 73 (277)
..|+.-.+|-.|.+.|...++.|++++|+-.... + ......++.+|.+++.
T Consensus 284 ~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~ 352 (604)
T PRK13984 284 KKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHL 352 (604)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEEC
Confidence 4577778999999999999999999998843221 1 2345677888988754
No 356
>PRK06172 short chain dehydrogenase; Provisional
Probab=50.70 E-value=1.4e+02 Score=24.74 Aligned_cols=54 Identities=15% Similarity=0.232 Sum_probs=37.3
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 75 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~-~~~~~~~~~~Ga~v~~~~ 75 (277)
.+.+|+..+|.-|.++|....+.|.+++++...... +.....++..+.++..+.
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVA 62 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 367899999999999999999999987666433211 122445566677665543
No 357
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=50.60 E-value=1.5e+02 Score=25.17 Aligned_cols=120 Identities=13% Similarity=0.116 Sum_probs=61.7
Q ss_pred HHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC-CChHH--HHHHHHHHHHhCCCeEecCCCC--CC-cch
Q 023801 36 GLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA-KGMKG--AVQKAEEILAKTPNAYMLQQFE--NP-ANP 109 (277)
Q Consensus 36 a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~~--~~~~a~~~~~~~~~~~~~~~~~--~~-~~~ 109 (277)
+++++-++.|-|+.++ .-+.--.+++.+ +|.|-..+=.. +-.+. ...+|.=.-++.++.++++-.. +- ...
T Consensus 22 nig~aLA~~GkKv~li-D~DiGLRNLDli--mGlE~RiVYd~vdVi~g~~~l~QALIkDKr~~nL~lLPAsQtrdKdalt 98 (272)
T COG2894 22 NIGTALAQLGKKVVLI-DFDIGLRNLDLI--MGLENRIVYDLVDVIEGEATLNQALIKDKRLENLFLLPASQTRDKDALT 98 (272)
T ss_pred HHHHHHHHcCCeEEEE-ecCcCchhhhhh--hcccceeeeeehhhhcCccchhhHhhccccCCceEecccccccCcccCC
Confidence 3444445678776654 444445556654 78876544210 00111 1222211112333445443322 11 112
Q ss_pred hhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhc--CCCcEEEEEecCCCC
Q 023801 110 KIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEK--NPNIKLYGIEPTESP 166 (277)
Q Consensus 110 ~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~--~~~~~vigV~~~~~~ 166 (277)
.++...+..|+.+ ..+|+|+|= ..+||=+||+.. +.+--++-+.|+-+.
T Consensus 99 ~E~v~~vv~eL~~---~~fDyIi~D-----sPAGIE~G~~~A~~~Ad~AiVVtnPEvSs 149 (272)
T COG2894 99 PEGVKKVVNELKA---MDFDYIIID-----SPAGIEQGFKNAVYFADEAIVVTNPEVSS 149 (272)
T ss_pred HHHHHHHHHHHHh---cCCCEEEec-----CcchHHHHHHhhhhccceEEEEcCCCccc
Confidence 4565655555433 469999986 467888888764 345567777777664
No 358
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=50.49 E-value=1.4e+02 Score=24.53 Aligned_cols=50 Identities=12% Similarity=0.100 Sum_probs=35.7
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
+.++...+|.-|..-+......|-+++|+-|+..+ .+..+...| +|..+.
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~--~l~~l~~~~-~i~~~~ 59 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELES--ELTLLAEQG-GITWLA 59 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCH--HHHHHHHcC-CEEEEe
Confidence 35888999999999999999999999888776542 233333444 455544
No 359
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=50.40 E-value=1.4e+02 Score=25.22 Aligned_cols=54 Identities=17% Similarity=0.081 Sum_probs=36.8
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 75 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~-~~~~~~~~~~Ga~v~~~~ 75 (277)
.+.+|+..+|.-|+++|....+.|.+++++-..... ......++..|.++..+.
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 65 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVK 65 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 367888899999999999999999987776543211 122334455677765543
No 360
>PRK08068 transaminase; Reviewed
Probab=50.04 E-value=1.2e+02 Score=27.39 Aligned_cols=52 Identities=10% Similarity=-0.124 Sum_probs=33.8
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
.|+..++|..+..++..+ ..+-.-.|++|.-.-..-...++.+|++++.++-
T Consensus 96 ~i~it~G~~~~l~~~~~~-~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~ 147 (389)
T PRK08068 96 EVAILFGGKAGLVELPQC-LMNPGDTILVPDPGYPDYLSGVALARAQFETMPL 147 (389)
T ss_pred cEEEcCCcHHHHHHHHHH-hCCCCCEEEEcCCCCcchHHHHHhcCCEEEEeec
Confidence 367777777777765443 2333345666665555556667889999988874
No 361
>PRK07791 short chain dehydrogenase; Provisional
Probab=49.96 E-value=1.7e+02 Score=25.16 Aligned_cols=74 Identities=19% Similarity=0.199 Sum_probs=44.4
Q ss_pred CCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCC----------CCHHHHHHHHHcCCEEEEeCC-CCChHHHHHHHHH
Q 023801 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS----------MSLERRIILRAFGAELVLTDP-AKGMKGAVQKAEE 89 (277)
Q Consensus 21 g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~----------~~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~ 89 (277)
+...||+..++--|+++|....+.|.+++++-... ........++..|.++..+.. -.+.++..+...+
T Consensus 6 ~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~ 85 (286)
T PRK07791 6 GRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVDA 85 (286)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHH
Confidence 34678999999999999999999999877653221 011223445556777655432 1234444444455
Q ss_pred HHHhC
Q 023801 90 ILAKT 94 (277)
Q Consensus 90 ~~~~~ 94 (277)
..++.
T Consensus 86 ~~~~~ 90 (286)
T PRK07791 86 AVETF 90 (286)
T ss_pred HHHhc
Confidence 44443
No 362
>PRK07201 short chain dehydrogenase; Provisional
Probab=49.70 E-value=2.1e+02 Score=27.82 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=25.5
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeC
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 53 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp 53 (277)
.+.+|+..+|.-|.++|..-.+.|.+++++..
T Consensus 372 k~vlItGas~giG~~la~~l~~~G~~V~~~~r 403 (657)
T PRK07201 372 KVVLITGASSGIGRATAIKVAEAGATVFLVAR 403 (657)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 36788888999999999888888887666644
No 363
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=49.63 E-value=1.3e+02 Score=27.25 Aligned_cols=90 Identities=17% Similarity=0.204 Sum_probs=40.3
Q ss_pred CeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC--hHHHHHHHHHHHHhCC-CeEecCCC-CCCcchhhhhhchHHHHH
Q 023801 46 YRLIITMPASMSLERRIILRAFGAELVLTDPAKG--MKGAVQKAEEILAKTP-NAYMLQQF-ENPANPKIHYETTGPELW 121 (277)
Q Consensus 46 l~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~--~~~~~~~a~~~~~~~~-~~~~~~~~-~~~~~~~~g~~t~~~Ei~ 121 (277)
+|..++.-.+.-..-...++.+|-++.++.+... .....+...+..++.+ .....+.. .||.. . ...-+.+++
T Consensus 3 ~p~~i~fG~g~l~~l~~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~--~-~v~~~~~~~ 79 (380)
T cd08185 3 QPTKIVFGAGKLNELGEEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTT--T-TVMEGAALA 79 (380)
T ss_pred CCCeEEECcCHHHHHHHHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCH--H-HHHHHHHHH
Confidence 3445555555444444556667777777664322 1223344444444432 12211211 23432 1 111122334
Q ss_pred hhhCCCCCEEEEecCCchhH
Q 023801 122 KGSGGRIDALVSGIGTGGTI 141 (277)
Q Consensus 122 ~Q~~~~~d~iv~pvG~Gg~~ 141 (277)
++ .++|.| +++|+|+.+
T Consensus 80 ~~--~~~D~I-iavGGGS~i 96 (380)
T cd08185 80 RE--EGCDFV-VGLGGGSSM 96 (380)
T ss_pred HH--cCCCEE-EEeCCccHH
Confidence 43 257755 578877654
No 364
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=49.56 E-value=78 Score=27.38 Aligned_cols=82 Identities=16% Similarity=0.128 Sum_probs=46.4
Q ss_pred HHHHHHHHHHcCCCCCCCcEEEeeCCchH--HHHH---HHHHHHCCCeEEEEe--CCCCCHHHHHHHHHcCCEEEEeCCC
Q 023801 5 GYSMISDAEAKGLITPGESVLIEPTSGNT--GIGL---AFMAAAKQYRLIITM--PASMSLERRIILRAFGAELVLTDPA 77 (277)
Q Consensus 5 a~~~v~~a~~~g~l~~g~~~vv~aSsGN~--g~a~---A~aa~~~Gl~~~vvv--p~~~~~~~~~~~~~~Ga~v~~~~~~ 77 (277)
.+.+++...+++.-. .++.-+--|- -..+ ...|+..|++.+++. |...+......++.+|-+.++.-.+
T Consensus 81 ~lel~~~~r~~~~~~----Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaP 156 (265)
T COG0159 81 TLELVEEIRAKGVKV----PIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAP 156 (265)
T ss_pred HHHHHHHHHhcCCCC----CEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCC
Confidence 455666666555422 2455554443 2223 447777888888773 5555556677777888877665433
Q ss_pred CChHHHHHHHHHH
Q 023801 78 KGMKGAVQKAEEI 90 (277)
Q Consensus 78 ~~~~~~~~~a~~~ 90 (277)
..-+++++...+.
T Consensus 157 tt~~~rl~~i~~~ 169 (265)
T COG0159 157 TTPDERLKKIAEA 169 (265)
T ss_pred CCCHHHHHHHHHh
Confidence 3334555544443
No 365
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=49.54 E-value=1.6e+02 Score=24.69 Aligned_cols=34 Identities=12% Similarity=0.214 Sum_probs=22.0
Q ss_pred CCCCEEEEecCCchhHHHHHHHHhhcCC--CcEEEEEe
Q 023801 126 GRIDALVSGIGTGGTITGAGKFLKEKNP--NIKLYGIE 161 (277)
Q Consensus 126 ~~~d~iv~pvG~Gg~~aGi~~~~~~~~~--~~~vigV~ 161 (277)
+++|.|++. +...+.|+..++++.+. ++.|+|.+
T Consensus 181 ~~~~ai~~~--~d~~a~~~~~al~~~g~~~di~vig~d 216 (275)
T cd06320 181 PDLKAIYCN--NDTMALGVVEAVKNAGKQGKVLVVGTD 216 (275)
T ss_pred CCccEEEEC--CchhHHHHHHHHHhcCCCCCeEEEecC
Confidence 457777665 44456688888887654 56666664
No 366
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=49.31 E-value=1.4e+02 Score=29.28 Aligned_cols=51 Identities=22% Similarity=0.214 Sum_probs=38.4
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCC---------C---------HHHHHHHHHcCCEEEE
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---------S---------LERRIILRAFGAELVL 73 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~---------~---------~~~~~~~~~~Ga~v~~ 73 (277)
..|+.-.+|-.|.+.|...++.|.+++||=.... + ...+..++.+|.++..
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~ 396 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFEL 396 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEEC
Confidence 5799999999999999999999999888843221 1 1135566778877654
No 367
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=49.17 E-value=46 Score=26.15 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=36.8
Q ss_pred EEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 25 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 25 vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
+|...+|+.|..++-...+.|.++++++....+..+ ..+.+++..+-
T Consensus 2 ~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-----~~~~~~~~~d~ 48 (183)
T PF13460_consen 2 LVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-----SPGVEIIQGDL 48 (183)
T ss_dssp EEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-----CTTEEEEESCT
T ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-----ccccccceeee
Confidence 678889999999999999999999999877543333 55666666553
No 368
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=49.16 E-value=1.5e+02 Score=24.58 Aligned_cols=31 Identities=16% Similarity=0.128 Sum_probs=26.3
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 53 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp 53 (277)
+.+|+..+|.-|.++|..-...|.+++++-.
T Consensus 4 ~ilItG~~~~IG~~la~~l~~~g~~vi~~~r 34 (259)
T PRK12384 4 VAVVIGGGQTLGAFLCHGLAEEGYRVAVADI 34 (259)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 5789999999999999999989988766643
No 369
>PLN02494 adenosylhomocysteinase
Probab=49.05 E-value=79 Score=29.82 Aligned_cols=93 Identities=16% Similarity=0.206 Sum_probs=58.4
Q ss_pred CCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeE
Q 023801 19 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAY 98 (277)
Q Consensus 19 ~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (277)
..| ++++....|+-|+++|..++.+|.+++++ . .++.+.......|.++. + .++ ..+.- +.+
T Consensus 252 LaG-KtVvViGyG~IGr~vA~~aka~Ga~VIV~-e--~dp~r~~eA~~~G~~vv--~----leE-------al~~A-DVV 313 (477)
T PLN02494 252 IAG-KVAVICGYGDVGKGCAAAMKAAGARVIVT-E--IDPICALQALMEGYQVL--T----LED-------VVSEA-DIF 313 (477)
T ss_pred cCC-CEEEEECCCHHHHHHHHHHHHCCCEEEEE-e--CCchhhHHHHhcCCeec--c----HHH-------HHhhC-CEE
Confidence 445 57999999999999999999999985554 2 23344444556787753 1 122 12222 444
Q ss_pred ecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCch
Q 023801 99 MLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGG 139 (277)
Q Consensus 99 ~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg 139 (277)
+.... -...+..+.++++ ++..+++-+|..+
T Consensus 314 I~tTG--------t~~vI~~e~L~~M--K~GAiLiNvGr~~ 344 (477)
T PLN02494 314 VTTTG--------NKDIIMVDHMRKM--KNNAIVCNIGHFD 344 (477)
T ss_pred EECCC--------CccchHHHHHhcC--CCCCEEEEcCCCC
Confidence 43111 1233456777777 5788999998854
No 370
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=48.91 E-value=1.7e+02 Score=24.92 Aligned_cols=71 Identities=20% Similarity=0.151 Sum_probs=39.3
Q ss_pred cEEEeeCCc--hHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHH-HHcCCEE-EEeCCCCChHHHHHHHHHHHHhC
Q 023801 23 SVLIEPTSG--NTGIGLAFMAAAKQYRLIITMPASMSLERRIIL-RAFGAEL-VLTDPAKGMKGAVQKAEEILAKT 94 (277)
Q Consensus 23 ~~vv~aSsG--N~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~-~~~Ga~v-~~~~~~~~~~~~~~~a~~~~~~~ 94 (277)
..||+..++ .-|+++|....+.|.+++++-.......+++.+ +..|..+ +.+|- .+.++..+...+..++.
T Consensus 9 ~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv-~d~~~v~~~~~~~~~~~ 83 (271)
T PRK06505 9 RGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDV-EDIASVDAVFEALEKKW 83 (271)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCC-CCHHHHHHHHHHHHHHh
Confidence 567777775 689999999999999877753222112233333 3446433 33343 24444444444444443
No 371
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=48.71 E-value=1e+02 Score=29.21 Aligned_cols=39 Identities=10% Similarity=-0.060 Sum_probs=19.2
Q ss_pred HHHHHHHCCCeEEEEeCCCCCHH-HHHHHHHcCCEEEEeCC
Q 023801 37 LAFMAAAKQYRLIITMPASMSLE-RRIILRAFGAELVLTDP 76 (277)
Q Consensus 37 ~A~aa~~~Gl~~~vvvp~~~~~~-~~~~~~~~Ga~v~~~~~ 76 (277)
.+..|..++.+.+|+...+-... ++... ...+.|+.+..
T Consensus 367 Av~~A~~l~akaIVv~T~SG~TA~~lS~~-RP~~pIiavT~ 406 (480)
T cd00288 367 AVRAAFELGAKAIVVLTTSGRTARLVSKY-RPNAPIIAVTR 406 (480)
T ss_pred HHHHHHhcCCCEEEEECCCcHHHHHHHhh-CCCCCEEEEcC
Confidence 34445556777666655433222 33332 23466666653
No 372
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=48.53 E-value=1.1e+02 Score=27.94 Aligned_cols=34 Identities=21% Similarity=0.188 Sum_probs=29.4
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS 57 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~ 57 (277)
+|-.-.+|..|+-++.+|+++|++++++-|...+
T Consensus 3 tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~ 36 (375)
T COG0026 3 TVGILGGGQLGRMMALAAARLGIKVIVLDPDADA 36 (375)
T ss_pred eEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCC
Confidence 4667789999999999999999999999876443
No 373
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=48.50 E-value=2e+02 Score=25.63 Aligned_cols=32 Identities=25% Similarity=0.220 Sum_probs=28.5
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 54 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~ 54 (277)
++|..-.+|.-|.++|..+...|++++++-+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~ 39 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPA 39 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 45788899999999999999999999999664
No 374
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=48.50 E-value=1.8e+02 Score=25.09 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=18.0
Q ss_pred HHCCCeEEEEeCCCCC-----HHHHHHHHHcCCEEEEeCC
Q 023801 42 AAKQYRLIITMPASMS-----LERRIILRAFGAELVLTDP 76 (277)
Q Consensus 42 ~~~Gl~~~vvvp~~~~-----~~~~~~~~~~Ga~v~~~~~ 76 (277)
+..|+++..+ |.... ..-...++..+.+++++|.
T Consensus 50 ~~~g~~v~~~-~~~~~~~~d~~~~~~~l~~~~~d~vV~D~ 88 (279)
T TIGR03590 50 LSAGFPVYEL-PDESSRYDDALELINLLEEEKFDILIVDH 88 (279)
T ss_pred HHcCCeEEEe-cCCCchhhhHHHHHHHHHhcCCCEEEEcC
Confidence 4566664443 33221 1234555666777777774
No 375
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.45 E-value=1.5e+02 Score=24.21 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=28.1
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 54 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~ 54 (277)
+.+|+..+|.-|.+++....+.|.+++++...
T Consensus 7 ~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~ 38 (238)
T PRK05786 7 KVAIIGVSEGLGYAVAYFALKEGAQVCINSRN 38 (238)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 67899999999999999999999988877654
No 376
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=48.40 E-value=75 Score=28.51 Aligned_cols=52 Identities=21% Similarity=0.183 Sum_probs=37.8
Q ss_pred EEEeeCCc--hHHHHHHHHHHHCCCeEEEEeCCCCC-H-HHH----HHHHHcCCEEEEeC
Q 023801 24 VLIEPTSG--NTGIGLAFMAAAKQYRLIITMPASMS-L-ERR----IILRAFGAELVLTD 75 (277)
Q Consensus 24 ~vv~aSsG--N~g~a~A~aa~~~Gl~~~vvvp~~~~-~-~~~----~~~~~~Ga~v~~~~ 75 (277)
+|.-...+ |.++|+..+++++|+.++++.|+... + ..+ ...+..|.++...+
T Consensus 158 ~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 217 (336)
T PRK03515 158 TLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTE 217 (336)
T ss_pred EEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 45555554 78999999999999999999998642 2 222 22455788888776
No 377
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=48.28 E-value=1.4e+02 Score=24.96 Aligned_cols=30 Identities=13% Similarity=0.133 Sum_probs=24.2
Q ss_pred cEEEeeCC--chHHHHHHHHHHHCCCeEEEEe
Q 023801 23 SVLIEPTS--GNTGIGLAFMAAAKQYRLIITM 52 (277)
Q Consensus 23 ~~vv~aSs--GN~g~a~A~aa~~~Gl~~~vvv 52 (277)
..+|+..+ +.-|+++|..-.+.|.++++.-
T Consensus 9 ~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~ 40 (252)
T PRK06079 9 KIVVMGVANKRSIAWGCAQAIKDQGATVIYTY 40 (252)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHCCCEEEEec
Confidence 56777766 6899999999999999877653
No 378
>PLN02928 oxidoreductase family protein
Probab=48.09 E-value=1.5e+02 Score=26.73 Aligned_cols=126 Identities=17% Similarity=0.092 Sum_probs=68.5
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE-eCCCCChHHHHHHHHHHHHhCCCeEecC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL-TDPAKGMKGAVQKAEEILAKTPNAYMLQ 101 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 101 (277)
+++..-..|+-|+.+|..++.+|++++++=|....... ..+...-..+.. .+....+ ....++.++- +...++
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~L~ell~~a-DiVvl~ 233 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPE-DGLLIPNGDVDDLVDEKGGH----EDIYEFAGEA-DIVVLC 233 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhh-hhhccccccccccccccCcc----cCHHHHHhhC-CEEEEC
Confidence 57888899999999999999999998887554221111 100000000000 0000001 1122333443 444433
Q ss_pred CCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhH--HHHHHHHhhcCCCcEEEEEec
Q 023801 102 QFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTI--TGAGKFLKEKNPNIKLYGIEP 162 (277)
Q Consensus 102 ~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~--aGi~~~~~~~~~~~~vigV~~ 162 (277)
--.++. -...+..|.+++| ++..+++-+|-|+.+ ..+..+++. ..+.=.+.++
T Consensus 234 lPlt~~----T~~li~~~~l~~M--k~ga~lINvaRG~lVde~AL~~AL~~--g~i~gAaLDV 288 (347)
T PLN02928 234 CTLTKE----TAGIVNDEFLSSM--KKGALLVNIARGGLLDYDAVLAALES--GHLGGLAIDV 288 (347)
T ss_pred CCCChH----hhcccCHHHHhcC--CCCeEEEECCCccccCHHHHHHHHHc--CCeeEEEEcc
Confidence 222222 2455677888888 578999999999887 344455553 2233344444
No 379
>PRK07832 short chain dehydrogenase; Provisional
Probab=47.91 E-value=1.7e+02 Score=24.68 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=24.6
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEe
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITM 52 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvv 52 (277)
+.+|+..+|--|.++|....+.|.+++++-
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~ 31 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTD 31 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 458888999999999999998998765553
No 380
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=47.83 E-value=74 Score=28.07 Aligned_cols=60 Identities=20% Similarity=0.124 Sum_probs=40.1
Q ss_pred HcCCCCCCCcEEEeeCC-chHHHHHHHHHHHCCCeEEEEeCCCCCH-H-HH----HHHHHcCCEEEEeC
Q 023801 14 AKGLITPGESVLIEPTS-GNTGIGLAFMAAAKQYRLIITMPASMSL-E-RR----IILRAFGAELVLTD 75 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSs-GN~g~a~A~aa~~~Gl~~~vvvp~~~~~-~-~~----~~~~~~Ga~v~~~~ 75 (277)
+.|.++ |.+ |+-... -|.++|++.+++++|++++++.|....+ . .+ ...+..|+++..++
T Consensus 141 ~~g~l~-g~k-va~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~ 207 (302)
T PRK14805 141 QFGDVS-KVK-LAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTS 207 (302)
T ss_pred HhCCcC-CcE-EEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 356653 433 444444 5667999999999999999999986422 2 22 12456788887776
No 381
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=47.66 E-value=82 Score=29.00 Aligned_cols=44 Identities=11% Similarity=0.112 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCCCC--CHHHHHH----HHHcCCEEEEeC
Q 023801 32 NTGIGLAFMAAAKQYRLIITMPASM--SLERRII----LRAFGAELVLTD 75 (277)
Q Consensus 32 N~g~a~A~aa~~~Gl~~~vvvp~~~--~~~~~~~----~~~~Ga~v~~~~ 75 (277)
|.++|++.++.++|++++++-|+.. .+..+.. .+..|..+...+
T Consensus 205 ~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~ 254 (395)
T PRK07200 205 SVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVN 254 (395)
T ss_pred hHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 7789999999999999999999864 3333333 456788887765
No 382
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=47.23 E-value=1.4e+02 Score=28.53 Aligned_cols=105 Identities=24% Similarity=0.251 Sum_probs=66.3
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 102 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 102 (277)
++|..-.-|+-|+++|..++.+|++++.+=|.. +..+ ...+|.+. ++ +.+ ++.++- +...++-
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~-~~~~---~~~~g~~~--~~---~l~-------ell~~a-DvV~l~l 201 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYI-SPER---AEQLGVEL--VD---DLD-------ELLARA-DFITVHT 201 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC-ChhH---HHhcCCEE--cC---CHH-------HHHhhC-CEEEEcc
Confidence 468888999999999999999999988886642 2222 23456432 22 222 233333 4444433
Q ss_pred CCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHH--HHHHHHhh
Q 023801 103 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTIT--GAGKFLKE 150 (277)
Q Consensus 103 ~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~a--Gi~~~~~~ 150 (277)
-.++.+ ...+..+.++++ +++.+++-++.|+.+- .+..+++.
T Consensus 202 Plt~~T----~~li~~~~l~~m--k~ga~lIN~aRG~~vde~aL~~aL~~ 245 (525)
T TIGR01327 202 PLTPET----RGLIGAEELAKM--KKGVIIVNCARGGIIDEAALYEALEE 245 (525)
T ss_pred CCChhh----ccCcCHHHHhcC--CCCeEEEEcCCCceeCHHHHHHHHHc
Confidence 333322 234556888887 5789999999999864 44455554
No 383
>PRK06114 short chain dehydrogenase; Provisional
Probab=47.23 E-value=1.7e+02 Score=24.40 Aligned_cols=54 Identities=11% Similarity=0.060 Sum_probs=37.2
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEeC
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTD 75 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~--~~~~~~~~~~Ga~v~~~~ 75 (277)
...+|+..+|--|.++|..-...|.++++.-..... ....+.++..|.++..+.
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~ 64 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIA 64 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEE
Confidence 367899999999999999999999987776543321 222345566676665443
No 384
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=47.14 E-value=1.4e+02 Score=28.28 Aligned_cols=22 Identities=9% Similarity=0.116 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHCCCeEEEEeCC
Q 023801 33 TGIGLAFMAAAKQYRLIITMPA 54 (277)
Q Consensus 33 ~g~a~A~aa~~~Gl~~~vvvp~ 54 (277)
-+.+....|..++.+++|+...
T Consensus 361 ia~~a~~~a~~~~akaIVv~T~ 382 (473)
T TIGR01064 361 IALSAVEAAEKLDAKAIVVLTE 382 (473)
T ss_pred HHHHHHHHHhhcCCCEEEEEcC
Confidence 3444455555667776666544
No 385
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=47.12 E-value=1.5e+02 Score=25.91 Aligned_cols=53 Identities=19% Similarity=0.167 Sum_probs=37.7
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
.++..++|..+..++..+-..+-.-.|++|..........++..|++++.++-
T Consensus 35 ~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~ 87 (352)
T cd00616 35 YAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAILLLGATPVFVDI 87 (352)
T ss_pred eEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHcCCeEEEEec
Confidence 35666788777666655543333356788887777778888899999999874
No 386
>PRK06108 aspartate aminotransferase; Provisional
Probab=46.84 E-value=1.6e+02 Score=26.35 Aligned_cols=52 Identities=15% Similarity=0.030 Sum_probs=33.0
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
.|+..++|..+..+++.+-. +-.-.|+++......-...++.+|++++.++.
T Consensus 86 ~i~~t~g~~~al~~~~~~l~-~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~ 137 (382)
T PRK06108 86 RIAVTSSGVQALMLAAQALV-GPGDEVVAVTPLWPNLVAAPKILGARVVCVPL 137 (382)
T ss_pred eEEEeCChHHHHHHHHHHhc-CCCCEEEEeCCCccchHHHHHHCCCEEEEeeC
Confidence 57778888888877766532 21123444443333445567889999988864
No 387
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=46.70 E-value=1.7e+02 Score=25.49 Aligned_cols=51 Identities=22% Similarity=0.213 Sum_probs=32.5
Q ss_pred cCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCe-EEEEeCCCCCHHHHHHHHHcCC
Q 023801 15 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYR-LIITMPASMSLERRIILRAFGA 69 (277)
Q Consensus 15 ~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~-~~vvvp~~~~~~~~~~~~~~Ga 69 (277)
...+.++.+.+|. .+|..|.++...|+.+|++ +++..+ ++.+...++.+|+
T Consensus 154 ~~~~~~~~~vlI~-g~g~~g~~~~~lA~~~G~~~v~~~~~---~~~~~~~l~~~g~ 205 (343)
T cd08236 154 LAGITLGDTVVVI-GAGTIGLLAIQWLKILGAKRVIAVDI---DDEKLAVARELGA 205 (343)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHcCC
Confidence 3456677665565 5688888888888888887 433322 2345555566665
No 388
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=46.63 E-value=1.7e+02 Score=24.44 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=21.6
Q ss_pred CCCCEEEEecCCchhHHHHHHHHhhcCC--CcEEEEE
Q 023801 126 GRIDALVSGIGTGGTITGAGKFLKEKNP--NIKLYGI 160 (277)
Q Consensus 126 ~~~d~iv~pvG~Gg~~aGi~~~~~~~~~--~~~vigV 160 (277)
+++|.|++. ...+.|+..++++.+. ++.|+|.
T Consensus 183 ~~~~~i~~~---d~~a~~~~~~l~~~g~p~di~vig~ 216 (268)
T cd06306 183 PDIDYIVGS---AVAAEAAVGILRQRGLTDQIKIVST 216 (268)
T ss_pred CCcCEEeec---chhhhHHHHHHHhcCCCCCeEEEec
Confidence 457888753 5566788888887653 5667765
No 389
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=46.51 E-value=2e+02 Score=26.06 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=32.8
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
.|+..+++..+..++..+-... .-.|++|.-....-...++.+|++++.++
T Consensus 97 ~i~~t~G~~~al~~~~~~l~~~-gd~v~i~~P~y~~~~~~~~~~g~~v~~~~ 147 (401)
T TIGR01264 97 DVVLCSGCSHAIEMCIAALANA-GQNILVPRPGFPLYETLAESMGIEVKLYN 147 (401)
T ss_pred HEEECcChHHHHHHHHHHhCCC-CCEEEEeCCCChhHHHHHHHcCCEEEEee
Confidence 4777777788777766543221 22455555444455667789999998875
No 390
>PRK07777 aminotransferase; Validated
Probab=46.15 E-value=1.8e+02 Score=26.21 Aligned_cols=51 Identities=10% Similarity=0.034 Sum_probs=32.2
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
.|+..++|.++..++..+-. .-.-.|+++......-...++.+|++++.++
T Consensus 87 ~i~~t~G~~~al~~~~~~~~-~~gd~vli~~p~y~~~~~~~~~~g~~~~~~~ 137 (387)
T PRK07777 87 EVLVTVGATEAIAAAVLGLV-EPGDEVLLIEPYYDSYAAVIAMAGAHRVPVP 137 (387)
T ss_pred cEEEeCCcHHHHHHHHHHhc-CCCCEEEEeCCCchhhHHHHHHCCCEEEEee
Confidence 47778888888877766542 2112344444334444566788899988875
No 391
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=46.07 E-value=1.1e+02 Score=28.58 Aligned_cols=52 Identities=19% Similarity=0.118 Sum_probs=39.7
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCC--------------C----HHHHHHHHHcCCEEEEe
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--------------S----LERRIILRAFGAELVLT 74 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~--------------~----~~~~~~~~~~Ga~v~~~ 74 (277)
..|+.-.+|-.|.+.|...++.|.++++|-.... + ...++.++.+|.+++.-
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~ 213 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTN 213 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeC
Confidence 4699999999999999999999999998854321 1 12356678889887653
No 392
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=45.91 E-value=2.4e+02 Score=25.85 Aligned_cols=81 Identities=20% Similarity=0.179 Sum_probs=47.8
Q ss_pred EEEeeCCchHHHHHHHHHHH-CCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhCCCeEecC
Q 023801 24 VLIEPTSGNTGIGLAFMAAA-KQYRLIITMPASMSLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKTPNAYMLQ 101 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~-~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~ 101 (277)
.|+..++++.+..+++.+-. -| + .|+++.-.-..-...++.+|++++.++-. .+++ .+..++........+|+.
T Consensus 143 ~Iiit~G~~~al~~~~~~l~~pg-d-~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~g~~--~~~l~~~~~~~~k~i~~~ 218 (431)
T PRK15481 143 EIDLTSGAIDAIERLLCAHLLPG-D-SVAVEDPCFLSSINMLRYAGFSASPVSVDAEGMQ--PEKLERALAQGARAVILT 218 (431)
T ss_pred eEEEecCcHHHHHHHHHHhCCCC-C-EEEEeCCCcHHHHHHHHHcCCeEEeeccCCCCCC--HHHHHHHHhcCCCEEEEC
Confidence 58888888988877766532 23 2 35555555566677888999999998642 1222 122222222334566665
Q ss_pred -CCCCCcc
Q 023801 102 -QFENPAN 108 (277)
Q Consensus 102 -~~~~~~~ 108 (277)
..+||..
T Consensus 219 p~p~NPTG 226 (431)
T PRK15481 219 PRAHNPTG 226 (431)
T ss_pred CCCCCCCC
Confidence 4556654
No 393
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=45.90 E-value=1.4e+02 Score=27.16 Aligned_cols=52 Identities=17% Similarity=0.133 Sum_probs=33.6
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
.|+..+++..+..+++.+-. +-.-.|++|.-....-...++.+|++++.++-
T Consensus 106 ~i~it~G~~~al~~~~~~~~-~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~ 157 (412)
T PTZ00433 106 NVVLCSGVSHAILMALTALC-DEGDNILVPAPGFPHYETVCKAYGIEMRFYNC 157 (412)
T ss_pred hEEEeCChHHHHHHHHHHhc-CCCCEEEEccCCcccHHHHHHHcCCEEEEEec
Confidence 47777777888777766542 22224555554444456667889999988863
No 394
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=45.87 E-value=60 Score=26.93 Aligned_cols=47 Identities=23% Similarity=0.254 Sum_probs=27.7
Q ss_pred hHHHHHhhhCCCCCEEE-EecCCchhHHHHHHHHhhcCCCcEEEEEecCC
Q 023801 116 TGPELWKGSGGRIDALV-SGIGTGGTITGAGKFLKEKNPNIKLYGIEPTE 164 (277)
Q Consensus 116 ~~~Ei~~Q~~~~~d~iv-~pvG~Gg~~aGi~~~~~~~~~~~~vigV~~~~ 164 (277)
...||+-|+ +||.|+ +.+-.||++.=.+.-++..+++.+|+||+..-
T Consensus 23 ~~qeli~~~--kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdi 70 (206)
T PF04989_consen 23 AYQELIWEL--KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDI 70 (206)
T ss_dssp HHHHHHHHH----SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-G
T ss_pred HHHHHHHHh--CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCc
Confidence 456888887 688776 44556776655555566667889999999853
No 395
>PRK10565 putative carbohydrate kinase; Provisional
Probab=45.79 E-value=1e+02 Score=29.33 Aligned_cols=51 Identities=22% Similarity=0.203 Sum_probs=29.1
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHH---HHHHHHHHHCCCeEEEEeC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTG---IGLAFMAAAKQYRLIITMP 53 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g---~a~A~aa~~~Gl~~~vvvp 53 (277)
|.|.+.......+++ +.+..+.+|.+..||.| .++|..-...|.++.+|+.
T Consensus 42 ME~Ag~~va~~i~~~--~~~~~~v~vl~G~GNNGGDG~v~AR~L~~~G~~V~v~~~ 95 (508)
T PRK10565 42 MLRAGEAAFQVARSA--YPDARHWLVLCGHGNNGGDGYVVARLAQAAGIDVTLLAQ 95 (508)
T ss_pred HHHHHHHHHHHHHHh--cCCCCeEEEEEcCCCchHHHHHHHHHHHHCCCceEEEEE
Confidence 345555554444432 22222556777776654 3455555556999999974
No 396
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=45.77 E-value=1.8e+02 Score=24.48 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=20.9
Q ss_pred CCCEEEEecCCchhHHHHHHHHhhcCC----CcEEEE
Q 023801 127 RIDALVSGIGTGGTITGAGKFLKEKNP----NIKLYG 159 (277)
Q Consensus 127 ~~d~iv~pvG~Gg~~aGi~~~~~~~~~----~~~vig 159 (277)
.||+|||. +...+.|+..++++.+. ++.|++
T Consensus 178 ~~~ai~~~--~d~~A~gvl~al~~~gl~vP~dvsvig 212 (269)
T cd06287 178 DLDALCVP--VDAFAVGAVRAATELGRAVPDQLRVVT 212 (269)
T ss_pred CCCEEEEc--CcHHHHHHHHHHHHcCCCCCCceEEEe
Confidence 57888876 45567788888887653 345665
No 397
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=45.74 E-value=1.7e+02 Score=23.95 Aligned_cols=130 Identities=18% Similarity=0.085 Sum_probs=72.8
Q ss_pred HhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEEecCCCCccC-------CCCCCCcccCccCCCCCcc--Ccc
Q 023801 121 WKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS-------GGKPGPHKIQGIGAGFVPG--VLE 191 (277)
Q Consensus 121 ~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~-------~~~~~~~~~~gl~~~~~~~--~~~ 191 (277)
+..|...++-++.=+|.|+-..++-.+ ..+|..|+++++......-. -+.++-..++|-+....+. ..+
T Consensus 27 ls~L~~~~g~~l~DIGaGtGsi~iE~a--~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAGTGSITIEWA--LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred HHhhCCCCCCEEEEeCCCccHHHHHHH--HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCC
Confidence 345556788788888877766666554 45799999999975542100 0112222333333222111 122
Q ss_pred ccccCeEEEeCHHHHHHHHHHHHHHcCCeeec-cHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCC
Q 023801 192 VNIIDEVVQVSSDEAIETAKLLALKEGLFVGI-SSGGAAAAAIEIAKRPENAGKLIVVIFPSFGER 256 (277)
Q Consensus 192 ~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p-~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~ 256 (277)
.-++.+. .+.+++++++....+.-|.++-- .+=-.++.+++..++.... .++.+.-+.|.+
T Consensus 105 aiFIGGg--~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~--ei~~v~is~~~~ 166 (187)
T COG2242 105 AIFIGGG--GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR--EIVQVQISRGKP 166 (187)
T ss_pred EEEECCC--CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc--eEEEEEeeccee
Confidence 2233444 77888999988887776665544 4445555566555543222 566555455543
No 398
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=45.50 E-value=89 Score=26.19 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=44.1
Q ss_pred HHHHHHcCCCCCCCcEEEeeCCch----HHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 9 ISDAEAKGLITPGESVLIEPTSGN----TGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 9 v~~a~~~g~l~~g~~~vv~aSsGN----~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
+.+.+ .|-+.+|...+|....|. .+..+++.+.+.|-+|..|.-+..+..-++.++.+|.+
T Consensus 10 LD~~l-~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g~~ 74 (237)
T TIGR03877 10 MDEIL-HGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWD 74 (237)
T ss_pred HHHHh-cCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhCCC
Confidence 34444 456778877788877666 55556666667899999888777777778888888864
No 399
>PRK06207 aspartate aminotransferase; Provisional
Probab=45.47 E-value=2.2e+02 Score=25.95 Aligned_cols=51 Identities=18% Similarity=0.139 Sum_probs=33.5
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
.|+..+++..+..++..+- +.-.-.|+++.-....-...++.+|++++.++
T Consensus 104 ~I~it~Ga~~al~~~~~~l-~~~Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~ 154 (405)
T PRK06207 104 ELIITPGTQGALFLAVAAT-VARGDKVAIVQPDYFANRKLVEFFEGEMVPVQ 154 (405)
T ss_pred CEEEeCCcHHHHHHHHHHh-cCCCCEEEEeCCCchhHHHHHHHcCCEEEEEe
Confidence 4777778888887666543 22223444554445556678889999998776
No 400
>PRK08363 alanine aminotransferase; Validated
Probab=45.43 E-value=1.4e+02 Score=26.94 Aligned_cols=50 Identities=14% Similarity=0.032 Sum_probs=32.5
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
.|+..+++.++..++..+- ..-.-.|+++.-.-..-...++.+|++++.+
T Consensus 95 ~i~it~G~~~al~~~~~~~-~~~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~ 144 (398)
T PRK08363 95 DVRVTAAVTEALQLIFGAL-LDPGDEILIPGPSYPPYTGLVKFYGGVPVEY 144 (398)
T ss_pred hEEEeCCHHHHHHHHHHHh-CCCCCEEEEcCCCCcchHHHHHHcCCEEEEe
Confidence 4666777788877776554 3322346665555455566778899998877
No 401
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=45.28 E-value=31 Score=22.24 Aligned_cols=26 Identities=8% Similarity=-0.058 Sum_probs=22.7
Q ss_pred eCCchHHHHHHHHHHHCCCeEEEEeC
Q 023801 28 PTSGNTGIGLAFMAAAKQYRLIITMP 53 (277)
Q Consensus 28 aSsGN~g~a~A~aa~~~Gl~~~vvvp 53 (277)
.++.+.+..++..++..||++.++.-
T Consensus 7 G~C~~~a~l~~~llr~~GIpar~v~g 32 (68)
T smart00460 7 GTCGEFAALFVALLRSLGIPARVVSG 32 (68)
T ss_pred eeeHHHHHHHHHHHHHCCCCeEEEee
Confidence 56788999999999999999999853
No 402
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=44.91 E-value=1.8e+02 Score=23.99 Aligned_cols=53 Identities=11% Similarity=0.115 Sum_probs=36.6
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEeC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTD 75 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~--~~~~~~~~~~Ga~v~~~~ 75 (277)
+.+|+..+|--|.++|......|..++++...... +.....++..|.++..+.
T Consensus 8 ~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 62 (247)
T PRK12935 8 VAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQ 62 (247)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEE
Confidence 67899999999999999998999887654432211 112244556677776654
No 403
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=44.85 E-value=1.8e+02 Score=25.70 Aligned_cols=104 Identities=13% Similarity=0.017 Sum_probs=63.0
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 102 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 102 (277)
++|..-.-||-|+.+|-..+.+|++++++-+..... -+.+.. ....+ ..++.++- +...++-
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~--------~~~~~~--~~~~~-------l~e~l~~a-Dvvv~~l 198 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSW--------PGVQSF--AGREE-------LSAFLSQT-RVLINLL 198 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCC--------CCceee--ccccc-------HHHHHhcC-CEEEECC
Confidence 468888999999999999999999998875532110 122111 11011 12333333 4443322
Q ss_pred CCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHH--HHHHHHhh
Q 023801 103 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTIT--GAGKFLKE 150 (277)
Q Consensus 103 ~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~a--Gi~~~~~~ 150 (277)
-.++ .-...+..+.+++| +++.+++-+|-|+.+- .+..++++
T Consensus 199 Plt~----~T~~li~~~~l~~m--k~ga~lIN~aRG~vVde~aL~~aL~~ 242 (312)
T PRK15469 199 PNTP----ETVGIINQQLLEQL--PDGAYLLNLARGVHVVEDDLLAALDS 242 (312)
T ss_pred CCCH----HHHHHhHHHHHhcC--CCCcEEEECCCccccCHHHHHHHHhc
Confidence 2222 22345567888888 4789999999998864 44455554
No 404
>PRK12744 short chain dehydrogenase; Provisional
Probab=44.80 E-value=1.8e+02 Score=24.17 Aligned_cols=53 Identities=28% Similarity=0.148 Sum_probs=36.0
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCC-CH----HHHHHHHHcCCEEEEeC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SL----ERRIILRAFGAELVLTD 75 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~-~~----~~~~~~~~~Ga~v~~~~ 75 (277)
+.+|+..+|.-|.++|..-...|.+++++..... .. ...+.++..+.++..+.
T Consensus 10 ~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 67 (257)
T PRK12744 10 VVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQ 67 (257)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEe
Confidence 6788899999999999999999999666643211 11 22334555677765543
No 405
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=44.75 E-value=64 Score=30.34 Aligned_cols=54 Identities=22% Similarity=0.094 Sum_probs=30.4
Q ss_pred ChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHH---HHHHHHHHHCCCeEEEEeCCC
Q 023801 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTG---IGLAFMAAAKQYRLIITMPAS 55 (277)
Q Consensus 2 dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g---~a~A~aa~~~Gl~~~vvvp~~ 55 (277)
.|.+..+.....++-...++.+.+|.+..||.| ..+|......|.++.|+++..
T Consensus 40 E~AG~ava~~i~~~~~~~~~~~VlVlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~ 96 (462)
T PLN03049 40 ELAGLSVASAIAEVYSPSEYRRVLALCGPGNNGGDGLVAARHLHHFGYKPSICYPKR 96 (462)
T ss_pred HHHHHHHHHHHHHhcccccCCEEEEEECCCCCHHHHHHHHHHHHHCCCceEEEEECC
Confidence 444544444444321111123566777777764 355555556799999998654
No 406
>PRK06128 oxidoreductase; Provisional
Probab=44.63 E-value=2.1e+02 Score=24.71 Aligned_cols=54 Identities=17% Similarity=0.139 Sum_probs=38.3
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCC-CC--CHHHHHHHHHcCCEEEEeC
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA-SM--SLERRIILRAFGAELVLTD 75 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~-~~--~~~~~~~~~~~Ga~v~~~~ 75 (277)
.+.||+..+|--|+++|..-.+.|.++++.... .. .......++..|.+++.+.
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALP 112 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEe
Confidence 468999999999999999999999988765432 11 1223455667787776554
No 407
>PRK06290 aspartate aminotransferase; Provisional
Probab=44.61 E-value=1.9e+02 Score=26.54 Aligned_cols=52 Identities=8% Similarity=-0.017 Sum_probs=34.3
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
.|+..+++..+..++..+-. .-.-.|++|.-.-..-...++.+|++++.++-
T Consensus 108 ~I~it~Gs~~al~~~~~~~~-~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~ 159 (410)
T PRK06290 108 EVIHSIGSKPALAMLPSCFI-NPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPL 159 (410)
T ss_pred eEEEccCHHHHHHHHHHHhC-CCCCEEEEeCCCCccHHHHHHHcCCEEEEEec
Confidence 47777777888777665432 22234555554555556777889999999874
No 408
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=44.46 E-value=1.6e+02 Score=26.21 Aligned_cols=55 Identities=22% Similarity=0.123 Sum_probs=35.4
Q ss_pred cCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 15 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 15 ~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
.+.+++|.+.+|. .+|--|.+++..|+.+|.+.+++... +..+...++.+|++.+
T Consensus 175 ~~~~~~g~~vlV~-G~G~vG~~av~~Ak~~G~~vi~~~~~--~~~~~~~~~~~Ga~~~ 229 (357)
T PLN02514 175 FGLKQSGLRGGIL-GLGGVGHMGVKIAKAMGHHVTVISSS--DKKREEALEHLGADDY 229 (357)
T ss_pred cccCCCCCeEEEE-cccHHHHHHHHHHHHCCCeEEEEeCC--HHHHHHHHHhcCCcEE
Confidence 3555667554444 67899999999999999875554332 2223344567888643
No 409
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=44.31 E-value=1.2e+02 Score=27.85 Aligned_cols=91 Identities=10% Similarity=-0.018 Sum_probs=40.8
Q ss_pred CCCeEEEEeCCCCCHHHHHHHHHcCCEE-EEeCCCCChHH--HHHHHHHHHHhCCCeE--ecCCCCCCcchhhhhhchHH
Q 023801 44 KQYRLIITMPASMSLERRIILRAFGAEL-VLTDPAKGMKG--AVQKAEEILAKTPNAY--MLQQFENPANPKIHYETTGP 118 (277)
Q Consensus 44 ~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v-~~~~~~~~~~~--~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~g~~t~~~ 118 (277)
+-.|..|+.-.+.-..--..++.+|.+. .++.+ ..... ..+...+..++.+-.+ |-..-.||.. -...-+.
T Consensus 24 f~~P~~i~fG~g~~~~l~~~~~~~g~~~~lvv~~-~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~---~~v~~~~ 99 (395)
T PRK15454 24 FSVPPVTLCGPGAVSSCGQQAQTRGLKHLFVMAD-SFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCI---TDVCAAV 99 (395)
T ss_pred eecCCeEEECcCHHHHHHHHHHhcCCCEEEEEcC-cchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCH---HHHHHHH
Confidence 4455666655554433345667788544 44433 22221 1233333334332112 2112224432 1122234
Q ss_pred HHHhhhCCCCCEEEEecCCchhH
Q 023801 119 ELWKGSGGRIDALVSGIGTGGTI 141 (277)
Q Consensus 119 Ei~~Q~~~~~d~iv~pvG~Gg~~ 141 (277)
+++++. ++|.| +++|+|+.+
T Consensus 100 ~~~r~~--~~D~I-iavGGGS~i 119 (395)
T PRK15454 100 AQLRES--GCDGV-IAFGGGSVL 119 (395)
T ss_pred HHHHhc--CcCEE-EEeCChHHH
Confidence 445443 57755 588888654
No 410
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=44.30 E-value=1.8e+02 Score=23.89 Aligned_cols=54 Identities=19% Similarity=0.087 Sum_probs=36.1
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 75 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~-~~~~~~~~~~Ga~v~~~~ 75 (277)
.+.+|+..+|--|.++|......|..++++-..... ....+.++..|.++..+.
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYA 60 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 367888889999999999999999876655433211 122344555677765443
No 411
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=44.30 E-value=1.6e+02 Score=28.97 Aligned_cols=57 Identities=23% Similarity=0.139 Sum_probs=39.3
Q ss_pred CCCCCCcEEEeeCCchHHHHHHHHHHHCCCe-EEEEeCCC---C--CHHHHHHHHHcCCEEEEe
Q 023801 17 LITPGESVLIEPTSGNTGIGLAFMAAAKQYR-LIITMPAS---M--SLERRIILRAFGAELVLT 74 (277)
Q Consensus 17 ~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~-~~vvvp~~---~--~~~~~~~~~~~Ga~v~~~ 74 (277)
.+..| +.|+.-.+||.|.-+|..+.++|.+ ++++.+.. . ....+......|.+++..
T Consensus 319 ~~~~g-k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~a~~eGV~i~~~ 381 (652)
T PRK12814 319 ALHPG-KKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEIEEALAEGVSLREL 381 (652)
T ss_pred cccCC-CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCcEEec
Confidence 34455 4688899999999999999999975 77765432 1 233344445678877653
No 412
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=44.30 E-value=1e+02 Score=22.74 Aligned_cols=46 Identities=17% Similarity=0.008 Sum_probs=17.4
Q ss_pred EEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 25 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 25 vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
++.+..-.+...+--.|..+|++.+++.|....+.-++.++..|.+
T Consensus 59 avv~~~~~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 59 AVVCVPPDKVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIR 104 (116)
T ss_dssp EEE-S-HHHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-E
T ss_pred EEEEcCHHHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCE
Confidence 3334444444444444444455555554444344444444444443
No 413
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=44.24 E-value=1.5e+02 Score=23.33 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=29.4
Q ss_pred HHHHhhhC-CCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEEecCCC
Q 023801 118 PELWKGSG-GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTES 165 (277)
Q Consensus 118 ~Ei~~Q~~-~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~ 165 (277)
.++.+... ..+|.||+..|.-+.+.|+..++-. ..||||-+...
T Consensus 45 ~~~~~~~~~~~~~viIa~AG~~a~Lpgvva~~t~----~PVIgvP~~~~ 89 (150)
T PF00731_consen 45 LEFVKEYEARGADVIIAVAGMSAALPGVVASLTT----LPVIGVPVSSG 89 (150)
T ss_dssp HHHHHHTTTTTESEEEEEEESS--HHHHHHHHSS----S-EEEEEE-ST
T ss_pred HHHHHHhccCCCEEEEEECCCcccchhhheeccC----CCEEEeecCcc
Confidence 35555553 2479999999998999999888763 58999965543
No 414
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=44.18 E-value=2.3e+02 Score=25.15 Aligned_cols=56 Identities=14% Similarity=0.103 Sum_probs=35.4
Q ss_pred CCCCCcEEEeeCCchHHHHHHHHHHHCCCe-EEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 18 ITPGESVLIEPTSGNTGIGLAFMAAAKQYR-LIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 18 l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~-~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
+.|. .|+..++++.+..++..+- .+-. -.|+++.-.-..-....+.+|++++.++-
T Consensus 72 ~~~~--~I~~~~Gs~e~i~~~~~~~-~~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~ 128 (351)
T PRK01688 72 VKPE--QVLVSRGADEGIELLIRAF-CEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPT 128 (351)
T ss_pred CCHH--HEEEcCCHHHHHHHHHHHh-cCCCCCEEEEcCCCHHHHHHHHHHcCCEEEEeec
Confidence 4553 4777777788877776553 2221 34555544444455667889999998864
No 415
>PRK06949 short chain dehydrogenase; Provisional
Probab=44.05 E-value=1.6e+02 Score=24.34 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=27.0
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeC
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 53 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp 53 (277)
.+.+|+..+|.-|.++|....+.|.+++++..
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r 41 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASR 41 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 36788999999999999999999998666644
No 416
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=44.04 E-value=1.2e+02 Score=28.51 Aligned_cols=51 Identities=22% Similarity=0.246 Sum_probs=38.5
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCC---------C---------HHHHHHHHHcCCEEEE
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---------S---------LERRIILRAFGAELVL 73 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~---------~---------~~~~~~~~~~Ga~v~~ 73 (277)
..|+.-.+|-.|.+.|..+++.|.+++++-.... + ....+.++.+|.+++.
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 210 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHL 210 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEEC
Confidence 5699999999999999999999999888743221 1 1245667788887754
No 417
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=44.00 E-value=1.9e+02 Score=24.02 Aligned_cols=54 Identities=17% Similarity=0.181 Sum_probs=35.7
Q ss_pred CCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEe
Q 023801 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLT 74 (277)
Q Consensus 21 g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~-~~~~~~~~~~Ga~v~~~ 74 (277)
+.+.+|+..+|.-|.++|....+.|.+++++-..... ..-...++..|.++..+
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~ 65 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEAL 65 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEE
Confidence 4477899999999999999988899987766443211 11233345566555444
No 418
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=43.79 E-value=1.4e+02 Score=28.34 Aligned_cols=94 Identities=12% Similarity=0.114 Sum_probs=55.1
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEe---CCCCC-HH----HHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITM---PASMS-LE----RRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKT 94 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvv---p~~~~-~~----~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 94 (277)
+.+++.-. +..|.++++|++..-++ |+..+ +. -++.++..+..++++.+. +....+.++.++++.
T Consensus 372 r~vvt~H~-----af~YLa~~YGL~~~~~~~~~~~~ePS~~~L~~Li~~IK~~~V~~IF~Epq--~~~~~~~l~~IA~e~ 444 (479)
T TIGR03772 372 RHLITTHD-----AYSYLGQAYGLNIAGFVTPNPAVEPSLADRRRLTRTIENLKVPAVFLEPN--LAARSTTLNEIADEL 444 (479)
T ss_pred CEEEEECC-----cHHHHHHHCCCeEEeeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC--CCCchHHHHHHHHHc
Confidence 44666544 78999999999988665 33322 22 366778899999999863 233344466666665
Q ss_pred CCeEecCCCCCCcc-hhhhhhchHHHHHhhh
Q 023801 95 PNAYMLQQFENPAN-PKIHYETTGPELWKGS 124 (277)
Q Consensus 95 ~~~~~~~~~~~~~~-~~~g~~t~~~Ei~~Q~ 124 (277)
+.-...-+.++.. ....|..+..+.++++
T Consensus 445 -Gv~V~~l~~d~l~~~~~tY~~~M~~N~~~L 474 (479)
T TIGR03772 445 -GVRVCAIYGDTFDDDVTNYVDLMRFNADSL 474 (479)
T ss_pred -CCcEEeeecCCCCCccccHHHHHHHHHHHH
Confidence 3221111212221 0235666777766665
No 419
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=43.68 E-value=2.3e+02 Score=29.56 Aligned_cols=32 Identities=9% Similarity=0.118 Sum_probs=29.1
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeC
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 53 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp 53 (277)
.+.|+.-.+|-.|.++|++.++.|.++++|=.
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~ 414 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDG 414 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCeEEEEcc
Confidence 35799999999999999999999999999954
No 420
>PRK06841 short chain dehydrogenase; Provisional
Probab=43.62 E-value=1.9e+02 Score=23.95 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=26.5
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeC
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 53 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp 53 (277)
++.+|+..+|--|.++|....+.|.+++++-.
T Consensus 16 k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r 47 (255)
T PRK06841 16 KVAVVTGGASGIGHAIAELFAAKGARVALLDR 47 (255)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 36788888999999999999999998666544
No 421
>PRK08017 oxidoreductase; Provisional
Probab=43.46 E-value=1.9e+02 Score=23.92 Aligned_cols=51 Identities=24% Similarity=0.308 Sum_probs=38.3
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
+.+|+..+|.-|.++|..-.+.|.+++++... ..+.+.++..|.+.+.++-
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~D~ 54 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRK---PDDVARMNSLGFTGILLDL 54 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHhHHHHhCCCeEEEeec
Confidence 46888889999999999999999887665332 3555566667888777764
No 422
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=43.46 E-value=1.2e+02 Score=27.17 Aligned_cols=102 Identities=18% Similarity=0.211 Sum_probs=60.7
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 102 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 102 (277)
.+|..-..|+-|.++|...+.+|.+++++-+... +... + +.... +.+ ++.++- +...++-
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~---~~~~---~---~~~~~---~l~-------ell~~a-DiVil~l 206 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPN---KDLD---F---LTYKD---SVK-------EAIKDA-DIISLHV 206 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChh---Hhhh---h---hhccC---CHH-------HHHhcC-CEEEEeC
Confidence 3588889999999999999999999888755421 1110 0 00111 112 222332 4443332
Q ss_pred CCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHH--HHHHHHhh
Q 023801 103 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTIT--GAGKFLKE 150 (277)
Q Consensus 103 ~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~a--Gi~~~~~~ 150 (277)
|.. ..-...+..++++++ +++.+++-+|-|..+- .+..+++.
T Consensus 207 ---P~t-~~t~~li~~~~l~~m--k~gavlIN~aRG~~vd~~aL~~aL~~ 250 (330)
T PRK12480 207 ---PAN-KESYHLFDKAMFDHV--KKGAILVNAARGAVINTPDLIAAVND 250 (330)
T ss_pred ---CCc-HHHHHHHhHHHHhcC--CCCcEEEEcCCccccCHHHHHHHHHc
Confidence 222 222344567888877 4789999999998863 34445543
No 423
>PRK14057 epimerase; Provisional
Probab=43.35 E-value=2.1e+02 Score=24.58 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=20.6
Q ss_pred HCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 43 AKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 43 ~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
..|+++.|-+..+....++..+...||++++.+
T Consensus 189 ~~~~~~~IeVDGGI~~~ti~~l~~aGad~~V~G 221 (254)
T PRK14057 189 DKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSG 221 (254)
T ss_pred hcCCCceEEEECCCCHHHHHHHHHCCCCEEEEC
Confidence 345556666666666666666666666666655
No 424
>PRK05693 short chain dehydrogenase; Provisional
Probab=43.28 E-value=2e+02 Score=24.22 Aligned_cols=66 Identities=30% Similarity=0.183 Sum_probs=43.5
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHH
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILA 92 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~ 92 (277)
+.||+..+|--|.++|......|.+++++... ..+...+...+.+.+.+|-. +.++..+...+..+
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~~~~ 68 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARK---AEDVEALAAAGFTAVQLDVN-DGAALARLAEELEA 68 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHCCCeEEEeeCC-CHHHHHHHHHHHHH
Confidence 46888899999999999999999987766433 34555556667777766642 33333333344433
No 425
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=43.25 E-value=1.9e+02 Score=23.81 Aligned_cols=54 Identities=11% Similarity=0.043 Sum_probs=35.7
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCH-HHHHHHHHcCCEEEEeC
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILRAFGAELVLTD 75 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~-~~~~~~~~~Ga~v~~~~ 75 (277)
.+.+|+..+|.-|.++|..-...|.+++++....... .....++..+.++..+.
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 58 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFA 58 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 3678999999999999999999998877664332111 11223445566665544
No 426
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=43.24 E-value=1.7e+02 Score=25.78 Aligned_cols=52 Identities=17% Similarity=0.177 Sum_probs=35.0
Q ss_pred CCCCCCcEEEeeCCchHHHHHHHHHHHC-CCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023801 17 LITPGESVLIEPTSGNTGIGLAFMAAAK-QYRLIITMPASMSLERRIILRAFGAEL 71 (277)
Q Consensus 17 ~l~~g~~~vv~aSsGN~g~a~A~aa~~~-Gl~~~vvvp~~~~~~~~~~~~~~Ga~v 71 (277)
.+++|.+.+|...+|..|.++...|+.+ |.+.++.+... .+...++.+|++.
T Consensus 148 ~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~~~---~~~~~~~~~g~~~ 200 (352)
T cd08247 148 KLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTCSS---RSAELNKKLGADH 200 (352)
T ss_pred ccCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEeCh---hHHHHHHHhCCCE
Confidence 5677877777778889999999999987 55344444321 2233557788754
No 427
>COG4558 ChuT ABC-type hemin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=43.24 E-value=49 Score=28.88 Aligned_cols=22 Identities=23% Similarity=0.051 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHcCCEEEEeCCC
Q 023801 56 MSLERRIILRAFGAELVLTDPA 77 (277)
Q Consensus 56 ~~~~~~~~~~~~Ga~v~~~~~~ 77 (277)
-|+.-+++++..|-.++.++..
T Consensus 110 GP~~vl~qLraagV~vv~v~~~ 131 (300)
T COG4558 110 GPATVLDQLRAAGVPVVTVPEQ 131 (300)
T ss_pred CcHHHHHHHHHcCCcEEEcCCC
Confidence 3677888899999999888753
No 428
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=43.19 E-value=1.3e+02 Score=27.24 Aligned_cols=112 Identities=19% Similarity=0.180 Sum_probs=53.0
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHcCC-EEEEeCCCCChH-HHHHHHHHHHHhCCCeEe-cCC-CCCCcchhhhhhchHHHH
Q 023801 45 QYRLIITMPASMSLERRIILRAFGA-ELVLTDPAKGMK-GAVQKAEEILAKTPNAYM-LQQ-FENPANPKIHYETTGPEL 120 (277)
Q Consensus 45 Gl~~~vvvp~~~~~~~~~~~~~~Ga-~v~~~~~~~~~~-~~~~~a~~~~~~~~~~~~-~~~-~~~~~~~~~g~~t~~~Ei 120 (277)
-+|..|+.-.+.-..--..++.+|. ++.++.+..-.+ ...+...+..++.+-.+. .+. ..||.. . ...++
T Consensus 4 ~~p~~i~~G~g~l~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~--~----~v~~~ 77 (377)
T cd08176 4 YLPPTNLFGAGAIKEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTI--T----NVKDG 77 (377)
T ss_pred cCCCeEEECcCHHHHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCH--H----HHHHH
Confidence 3456666665554444556677785 566665422222 234444444444321222 211 113432 1 12334
Q ss_pred HhhhC-CCCCEEEEecCCchhHHHHHHHHhh-----------------cCCCcEEEEEecCC
Q 023801 121 WKGSG-GRIDALVSGIGTGGTITGAGKFLKE-----------------KNPNIKLYGIEPTE 164 (277)
Q Consensus 121 ~~Q~~-~~~d~iv~pvG~Gg~~aGi~~~~~~-----------------~~~~~~vigV~~~~ 164 (277)
.+++. .++|.| +++|+|+.+ =+++++.. ..+..++|.|.+..
T Consensus 78 ~~~~~~~~~D~I-IavGGGS~i-D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTta 137 (377)
T cd08176 78 LAVFKKEGCDFI-ISIGGGSPH-DCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTTA 137 (377)
T ss_pred HHHHHhcCCCEE-EEeCCcHHH-HHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCC
Confidence 44432 257755 578887653 33333321 12356788887654
No 429
>PRK12939 short chain dehydrogenase; Provisional
Probab=43.12 E-value=1.9e+02 Score=23.77 Aligned_cols=54 Identities=15% Similarity=0.075 Sum_probs=35.2
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEeC
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTD 75 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~-~~~~~~~~~~~Ga~v~~~~ 75 (277)
.+.+|+..+|.-|.++|....+.|.+++++..... .......++..+.++..+.
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIA 62 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 36788889999999999999999988666532211 1112334455566665543
No 430
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=43.02 E-value=2.1e+02 Score=24.87 Aligned_cols=52 Identities=23% Similarity=0.303 Sum_probs=32.8
Q ss_pred cCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 15 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 15 ~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
.+.+ ++.+.+|.+ +|..|.+++..|+.+|++.++++. .++.+...++.+|++
T Consensus 161 ~~~~-~~~~VLI~g-~g~vG~~~~~lak~~G~~~v~~~~--~s~~~~~~~~~~g~~ 212 (339)
T cd08232 161 AGDL-AGKRVLVTG-AGPIGALVVAAARRAGAAEIVATD--LADAPLAVARAMGAD 212 (339)
T ss_pred cCCC-CCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEEC--CCHHHHHHHHHcCCC
Confidence 3444 665656654 688888888899999984333332 234555566777763
No 431
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=42.97 E-value=1.9e+02 Score=23.74 Aligned_cols=53 Identities=15% Similarity=0.136 Sum_probs=36.7
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 75 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~-~~~~~~~~~~Ga~v~~~~ 75 (277)
+.+|+..+|.-|.+++..-.+.|.+++++...... ......++..+.++..+.
T Consensus 8 ~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 61 (251)
T PRK12826 8 VALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQ 61 (251)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 67899999999999999999999887666543211 223344566676665553
No 432
>PRK07069 short chain dehydrogenase; Validated
Probab=42.96 E-value=1.9e+02 Score=23.79 Aligned_cols=30 Identities=20% Similarity=0.246 Sum_probs=23.9
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMP 53 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp 53 (277)
.+|+..+|.-|.++|..-.+.|.+++++..
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r 31 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQGAKVFLTDI 31 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 478888899999999888888887666544
No 433
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=42.94 E-value=1.1e+02 Score=27.84 Aligned_cols=44 Identities=9% Similarity=0.098 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCCCC--CHHHHHH----HHHcCCEEEEeC
Q 023801 32 NTGIGLAFMAAAKQYRLIITMPASM--SLERRII----LRAFGAELVLTD 75 (277)
Q Consensus 32 N~g~a~A~aa~~~Gl~~~vvvp~~~--~~~~~~~----~~~~Ga~v~~~~ 75 (277)
|-++|+..+++++|++++++-|+.- ++..+.. .+..|.++..++
T Consensus 188 ~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~ 237 (357)
T TIGR03316 188 SVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVN 237 (357)
T ss_pred hHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 6678999999999999999999854 4433332 456788887776
No 434
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=42.90 E-value=36 Score=26.11 Aligned_cols=31 Identities=26% Similarity=0.345 Sum_probs=26.1
Q ss_pred EEeeCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 023801 25 LIEPTSGNTGIGLAFMAAAKQYRLIITMPAS 55 (277)
Q Consensus 25 vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~ 55 (277)
++...+|.-+++++..++.+|++++++=|..
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 4667889999999999999999999998874
No 435
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=42.88 E-value=82 Score=27.42 Aligned_cols=32 Identities=9% Similarity=0.154 Sum_probs=25.5
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 54 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~ 54 (277)
++++.-.+|..|++++++....|++-+.++..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR 159 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDV 159 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECC
Confidence 45888889999999999999999865555444
No 436
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=42.83 E-value=1.9e+02 Score=23.77 Aligned_cols=52 Identities=8% Similarity=0.164 Sum_probs=36.4
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEe
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLT 74 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~--~~~~~~~~~~Ga~v~~~ 74 (277)
..+|+..+|.-|+++|....+.|.+++++...... ......++..|.+++..
T Consensus 5 ~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (246)
T PRK12938 5 IAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIAS 58 (246)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEE
Confidence 56899999999999999999999886665432211 12244555678777654
No 437
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=42.81 E-value=1.8e+02 Score=26.30 Aligned_cols=84 Identities=14% Similarity=0.052 Sum_probs=43.5
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHH-HhCCCeEecCC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEIL-AKTPNAYMLQQ 102 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~ 102 (277)
.|+..+++..+..++..+- ..-.-.|++|.-....-....+.+|++++.++...++.-..+...+.. .......+++.
T Consensus 105 ~I~~t~Ga~~~i~~~~~~~-~~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~~v~l~~ 183 (380)
T PLN03026 105 NILVGCGADELIDLLMRCV-LDPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPRTPDFSLDVPRIVEAVETHKPKLLFLTS 183 (380)
T ss_pred hEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHHhccCCcEEEEeC
Confidence 4676666777776665442 121124555544444444556789999998864322221122222222 23335667665
Q ss_pred CCCCcc
Q 023801 103 FENPAN 108 (277)
Q Consensus 103 ~~~~~~ 108 (277)
-+||..
T Consensus 184 P~NPTG 189 (380)
T PLN03026 184 PNNPDG 189 (380)
T ss_pred CCCCCC
Confidence 455543
No 438
>PRK09082 methionine aminotransferase; Validated
Probab=42.74 E-value=2.4e+02 Score=25.38 Aligned_cols=52 Identities=8% Similarity=-0.088 Sum_probs=34.1
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
.|+..++|..+..++..+- +.-.-.|+++...-..-...++..|++++.++-
T Consensus 93 ~i~~t~G~~~al~~~~~~~-~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~ 144 (386)
T PRK09082 93 EITVTAGATEALFAAILAL-VRPGDEVIVFDPSYDSYAPAIELAGGRAVRVAL 144 (386)
T ss_pred cEEEeCCHHHHHHHHHHHH-cCCCCEEEEeCCCchhhHHHHHHcCCEEEEEec
Confidence 4777777777777666543 222234556655555566677889999998874
No 439
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=42.69 E-value=1.9e+02 Score=23.87 Aligned_cols=52 Identities=31% Similarity=0.397 Sum_probs=33.0
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcC
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFG 68 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~G 68 (277)
+.+.+++|.+.+|...+|..|.+++..++.+|.+.+++.. ++.+...++..|
T Consensus 102 ~~~~~~~g~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~~ 153 (293)
T cd05195 102 DLARLQKGESVLIHAAAGGVGQAAIQLAQHLGAEVFATVG---SEEKREFLRELG 153 (293)
T ss_pred HHhccCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhC
Confidence 3456777766555556788888888888888877544422 234455555555
No 440
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=42.66 E-value=1.5e+02 Score=26.35 Aligned_cols=52 Identities=15% Similarity=-0.056 Sum_probs=30.8
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
.|+..++.+.+..+.+.+- .+-.-.|+++......-....+.+|++++.++.
T Consensus 86 ~i~~t~G~~~~l~~~~~~l-~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~ 137 (367)
T PRK02731 86 RIILGNGSDEILELLARAY-LGPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPA 137 (367)
T ss_pred HEEEcCCHHHHHHHHHHHh-cCCCCEEEEecCCHHHHHHHHHHcCCeEEEecc
Confidence 4666666666665544332 222235666654444445556789999998874
No 441
>PRK09134 short chain dehydrogenase; Provisional
Probab=42.65 E-value=2e+02 Score=23.96 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=36.8
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCH--HHHHHHHHcCCEEEEeC
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRIILRAFGAELVLTD 75 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~--~~~~~~~~~Ga~v~~~~ 75 (277)
++.+|+..+|.-|..+|....+.|.+++++....... .-...++..|.++..+.
T Consensus 10 k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (258)
T PRK09134 10 RAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQ 65 (258)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 3679999999999999999999999877765432211 11233444577776543
No 442
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=42.58 E-value=1.3e+02 Score=21.66 Aligned_cols=48 Identities=21% Similarity=0.191 Sum_probs=27.0
Q ss_pred EEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 25 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 25 vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
++....|+.|+.++-.-+..+.+++++- ..+.+.+.++..|.+++.-+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid---~d~~~~~~~~~~~~~~i~gd 48 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVID---RDPERVEELREEGVEVIYGD 48 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEE---SSHHHHHHHHHTTSEEEES-
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEE---CCcHHHHHHHhccccccccc
Confidence 3455667777777777777555666652 23345555555565544433
No 443
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=42.50 E-value=1.2e+02 Score=27.26 Aligned_cols=94 Identities=17% Similarity=0.206 Sum_probs=44.0
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCC-e-EecCCCCCCcchhhhhhchHHHHHhhhC-CCCCEEEEecCC
Q 023801 61 RIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPN-A-YMLQQFENPANPKIHYETTGPELWKGSG-GRIDALVSGIGT 137 (277)
Q Consensus 61 ~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~-~~~d~iv~pvG~ 137 (277)
-..++.+|-++.++.+...++...+...+..++.+- . +++. ..+|.. . ...++.++.. .++| +|+++|+
T Consensus 15 ~~~~~~~g~~~liv~~~~~~~~~~~~v~~~l~~~~i~~~~~~~-~~~p~~--~----~v~~~~~~~~~~~~d-~IIavGG 86 (349)
T cd08550 15 AAILSTFGSKVAVVGGKTVLKKSRPRFEAALAKSIIVVDVIVF-GGECST--E----EVVKALCGAEEQEAD-VIIGVGG 86 (349)
T ss_pred HHHHHHcCCeEEEEEChHHHHHHHHHHHHHHHhcCCeeEEEEc-CCCCCH--H----HHHHHHHHHHhcCCC-EEEEecC
Confidence 355666777776665422333333444444444311 1 2221 123321 1 2234444442 2466 4567887
Q ss_pred chhHHHHHHHHhhcCCCcEEEEEecCC
Q 023801 138 GGTITGAGKFLKEKNPNIKLYGIEPTE 164 (277)
Q Consensus 138 Gg~~aGi~~~~~~~~~~~~vigV~~~~ 164 (277)
|.. .=+++++... ...++|.|.+..
T Consensus 87 Gs~-~D~aK~ia~~-~~~p~i~VPTta 111 (349)
T cd08550 87 GKT-LDTAKAVADR-LDKPIVIVPTIA 111 (349)
T ss_pred cHH-HHHHHHHHHH-cCCCEEEeCCcc
Confidence 654 4555555432 235777776643
No 444
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=42.50 E-value=80 Score=28.43 Aligned_cols=50 Identities=12% Similarity=0.011 Sum_probs=34.6
Q ss_pred EEeeCCchHHHHHHHHHHHCCCe--EEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 25 LIEPTSGNTGIGLAFMAAAKQYR--LIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 25 vv~aSsGN~g~a~A~aa~~~Gl~--~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
.+..++|..+..+++.+ ++++ -.|++|..........++..|+++++++-
T Consensus 47 ~v~~~sgt~al~~~l~a--l~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~~~~~~ 98 (380)
T TIGR03588 47 AVAFNSATSALHIACLA--LGVGPGDRVWTTPITFVATANCALYCGAKVDFVDI 98 (380)
T ss_pred EEEEcCHHHHHHHHHHH--cCCCCCCEEEeCCcchHHHHHHHHHcCCEEEEEec
Confidence 45556676666655544 4443 36777777666667788899999999874
No 445
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=42.49 E-value=2e+02 Score=25.99 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=34.9
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
.|+..+++.++..++..+- .+-.-.|+++......-...++.+|++++.++.
T Consensus 93 ~i~it~G~~~al~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~ 144 (391)
T PRK07309 93 EILVTIGATEALSASLTAI-LEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDT 144 (391)
T ss_pred cEEEeCChHHHHHHHHHHh-cCCCCEEEEeCCCCcchHHHHHHcCCEEEEEec
Confidence 4888888888888776654 332234555554444446677889999998874
No 446
>PRK07683 aminotransferase A; Validated
Probab=42.42 E-value=1.9e+02 Score=26.06 Aligned_cols=52 Identities=23% Similarity=0.301 Sum_probs=34.8
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
.|+..+++..+..++..+- ..-.-.|++|......-....+.+|++++.++.
T Consensus 91 ~I~~t~G~~~al~~~~~~l-~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~ 142 (387)
T PRK07683 91 EIIVTIGASEAIDIAFRTI-LEPGTEVILPAPIYPGYEPIIRLCGAKPVFIDT 142 (387)
T ss_pred cEEEeCChHHHHHHHHHHh-CCCCCEEEEcCCCccchHHHHHHcCCEEEEeec
Confidence 4777777788777666542 222245667765555556667889999999874
No 447
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=42.28 E-value=2e+02 Score=23.83 Aligned_cols=49 Identities=20% Similarity=0.189 Sum_probs=33.2
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHH-HHcCCEEEEe
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIIL-RAFGAELVLT 74 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~-~~~Ga~v~~~ 74 (277)
+.+|+..+|..|.++|-.....|.+++++... +.++..+ ...+.++..+
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~ 51 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRR---QERLQELKDELGDNLYIA 51 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHHhccceEEE
Confidence 35889999999999999999999987665432 2333333 2345555444
No 448
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=42.23 E-value=3.7e+02 Score=26.96 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=28.8
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 54 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~ 54 (277)
..|+.-.+|-.|.+.|...++.|.+++||-+.
T Consensus 432 ~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~ 463 (752)
T PRK12778 432 KKVAVIGSGPAGLSFAGDLAKRGYDVTVFEAL 463 (752)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 46999999999999999999999999998653
No 449
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=42.16 E-value=1.7e+02 Score=25.56 Aligned_cols=53 Identities=15% Similarity=0.104 Sum_probs=37.7
Q ss_pred EEEeeCCchHHHHHHHHHHHC-------------CCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAK-------------QYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~-------------Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
.++..++|..+..+|..+... +-+.+|+++..........++.+|++++.++.
T Consensus 59 ~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~ 124 (345)
T cd06450 59 DGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPV 124 (345)
T ss_pred CEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHHHHHhcCeEEeee
Confidence 367788888888888777542 12457777776655666666778999998873
No 450
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=42.13 E-value=2e+02 Score=23.90 Aligned_cols=35 Identities=14% Similarity=0.414 Sum_probs=22.0
Q ss_pred CCCCEEEEecCCchhHHHHHHHHhhcCC--CcEEEEEec
Q 023801 126 GRIDALVSGIGTGGTITGAGKFLKEKNP--NIKLYGIEP 162 (277)
Q Consensus 126 ~~~d~iv~pvG~Gg~~aGi~~~~~~~~~--~~~vigV~~ 162 (277)
+.||.||+.. .....|+..++++.+. ++.|+|.+.
T Consensus 182 ~~~~~i~~~~--d~~a~g~~~~l~~~g~~~di~vig~d~ 218 (273)
T cd06310 182 PDLKGIFGAN--EGSAVGAARAVRQAGKAGKVKVVGFDA 218 (273)
T ss_pred CCceEEEecC--chhHHHHHHHHHhcCCCCCeEEEEeCC
Confidence 3577777653 3455677788777653 566666653
No 451
>PRK08643 acetoin reductase; Validated
Probab=42.10 E-value=2e+02 Score=23.84 Aligned_cols=53 Identities=11% Similarity=0.110 Sum_probs=35.3
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCH-HHHHHHHHcCCEEEEeC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILRAFGAELVLTD 75 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~-~~~~~~~~~Ga~v~~~~ 75 (277)
..||+..+|.-|.++|....+.|.+++++-...... .....++..|.++..+.
T Consensus 4 ~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 57 (256)
T PRK08643 4 VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVK 57 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 568999999999999999999998876654332111 11233445566665543
No 452
>PRK05876 short chain dehydrogenase; Provisional
Probab=41.76 E-value=2.2e+02 Score=24.22 Aligned_cols=72 Identities=14% Similarity=0.073 Sum_probs=42.5
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeCC-CCChHHHHHHHHHHHHh
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDP-AKGMKGAVQKAEEILAK 93 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~-~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~~~~~ 93 (277)
.+.+|+..+|--|+++|..-.+.|.+++++...... ......++..|.++..+.- -.+.++..+...+..++
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 367899999999999999999999986665322111 1123344556777654432 12333333444444443
No 453
>PRK05852 acyl-CoA synthetase; Validated
Probab=41.70 E-value=2.2e+02 Score=26.71 Aligned_cols=67 Identities=22% Similarity=0.241 Sum_probs=50.3
Q ss_pred HHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 10 SDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 10 ~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
...+....+++|....+....+-.-....+++.+.|..++.+-|...+......++..++++++++.
T Consensus 57 a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 123 (534)
T PRK05852 57 AGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDA 123 (534)
T ss_pred HHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcC
Confidence 3344444467786655555667777778888999999988887777677778888999999999864
No 454
>PRK05973 replicative DNA helicase; Provisional
Probab=41.70 E-value=1.2e+02 Score=25.79 Aligned_cols=54 Identities=28% Similarity=0.347 Sum_probs=39.4
Q ss_pred CCCCCCCcEEEeeCC--ch--HHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCC
Q 023801 16 GLITPGESVLIEPTS--GN--TGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA 69 (277)
Q Consensus 16 g~l~~g~~~vv~aSs--GN--~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga 69 (277)
|.+.||..++|.+.. |= .+..+|+.+.+.|-++..|--+..+..-...+..+|.
T Consensus 59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R~~s~g~ 116 (237)
T PRK05973 59 SQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDRLRALGA 116 (237)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHcCC
Confidence 667888777777755 44 4444566666679898888877777777888888875
No 455
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=41.69 E-value=1.5e+02 Score=27.04 Aligned_cols=31 Identities=3% Similarity=-0.149 Sum_probs=15.8
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHcCC-EEEEeC
Q 023801 45 QYRLIITMPASMSLERRIILRAFGA-ELVLTD 75 (277)
Q Consensus 45 Gl~~~vvvp~~~~~~~~~~~~~~Ga-~v~~~~ 75 (277)
-.+..++.-.+.-..--..++.+|. ++.++.
T Consensus 6 ~~~~~i~~G~g~l~~l~~~~~~~g~~~~lvvt 37 (382)
T PRK10624 6 ILNETAYFGRGAIGALTDEVKRRGFKKALIVT 37 (382)
T ss_pred cCCCeEEECcCHHHHHHHHHHhcCCCEEEEEe
Confidence 3455555544443333455566774 554443
No 456
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=41.64 E-value=1.1e+02 Score=28.74 Aligned_cols=51 Identities=18% Similarity=0.105 Sum_probs=38.6
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCC--------------CH----HHHHHHHHcCCEEEE
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--------------SL----ERRIILRAFGAELVL 73 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~--------------~~----~~~~~~~~~Ga~v~~ 73 (277)
..|+.-.+|-.|.+.|...++.|.++++|-.... +. ...+.++.+|.+++.
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 212 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVT 212 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEEC
Confidence 4689999999999999999999999998843221 11 234566778888764
No 457
>PRK06181 short chain dehydrogenase; Provisional
Probab=41.57 E-value=2.1e+02 Score=23.86 Aligned_cols=53 Identities=21% Similarity=0.205 Sum_probs=35.5
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 75 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~-~~~~~~~~~~Ga~v~~~~ 75 (277)
+.+|+..+|.-|.+++......|.+++++...... ......++..|.++..+.
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~ 56 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVP 56 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 56888999999999999998999887776543211 112334455677665543
No 458
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=41.48 E-value=86 Score=27.64 Aligned_cols=58 Identities=14% Similarity=0.175 Sum_probs=39.7
Q ss_pred CCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCH----HHHHHHHHcCCEEEEeCC
Q 023801 18 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL----ERRIILRAFGAELVLTDP 76 (277)
Q Consensus 18 l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~----~~~~~~~~~Ga~v~~~~~ 76 (277)
+.+| .+|.|.+...+...+-..|.+.|.+..|++.++.|. .....+...|-++.++..
T Consensus 113 i~~g-~~ILT~~~S~tv~~~l~~a~~~~~~f~V~v~EsrP~~~G~~~a~~L~~~gI~vtlI~D 174 (301)
T TIGR00511 113 IRDG-DVVMTHCNSEAALSVIKTAFEQGKDIEVIATETRPRKQGHITAKELRDYGIPVTLIVD 174 (301)
T ss_pred cCCC-CEEEEECCcHHHHHHHHHHHHcCCcEEEEEecCCCcchHHHHHHHHHHCCCCEEEEeh
Confidence 3344 467777766666666666777788888888776653 235666778888888864
No 459
>PRK07035 short chain dehydrogenase; Provisional
Probab=41.36 E-value=2e+02 Score=23.72 Aligned_cols=52 Identities=15% Similarity=0.080 Sum_probs=35.1
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEe
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLT 74 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~-~~~~~~~~~~Ga~v~~~ 74 (277)
+.+|+..+|.-|.+++....+.|.+++++-..... ....+.+...|.++..+
T Consensus 10 ~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~ 62 (252)
T PRK07035 10 IALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEAL 62 (252)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEE
Confidence 67999999999999999999999987766432211 11233344556665544
No 460
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=41.26 E-value=2.5e+02 Score=24.82 Aligned_cols=84 Identities=10% Similarity=-0.021 Sum_probs=45.3
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCe---EEEEeCCCCCHHHHHHHHHcCCEEEEeCCC--CChHHHHHHHHHHHHhCCCeE
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYR---LIITMPASMSLERRIILRAFGAELVLTDPA--KGMKGAVQKAEEILAKTPNAY 98 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~---~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~~~a~~~~~~~~~~~ 98 (277)
.|+..+++..+.-++..+- .+-. -.|++|.-....-....+.+|++++.++-. .++.-..+..++...+.....
T Consensus 62 ~Iiit~Gs~~ai~~~~~~~-~~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i 140 (350)
T TIGR03537 62 QVLPSAGSKEAIFHFPLVF-IDPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILEETKIV 140 (350)
T ss_pred cEEEcCChHHHHHHHHHHH-cCCCCCCceEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhhccEEE
Confidence 4777777777665554432 2321 256666655556667778999999988642 222101111122222233566
Q ss_pred ecCCCCCCcc
Q 023801 99 MLQQFENPAN 108 (277)
Q Consensus 99 ~~~~~~~~~~ 108 (277)
+++..+||..
T Consensus 141 ~i~~p~NPtG 150 (350)
T TIGR03537 141 WINYPHNPTG 150 (350)
T ss_pred EEeCCCCCcC
Confidence 6665555553
No 461
>PRK06487 glycerate dehydrogenase; Provisional
Probab=41.18 E-value=1.7e+02 Score=25.91 Aligned_cols=110 Identities=18% Similarity=0.169 Sum_probs=69.2
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 102 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 102 (277)
++|..-.-||-|+.+|-.++.+|++++.+-+...+ . .. .. .+ -.++.++- +...++-
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~--------~~-----~~-~~-------l~ell~~s-Div~l~l 205 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-A--------RP-----DR-LP-------LDELLPQV-DALTLHC 205 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-c--------cc-----cc-cC-------HHHHHHhC-CEEEECC
Confidence 47888899999999999999999998877543211 0 00 00 01 22333443 4444332
Q ss_pred CCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhH--HHHHHHHhhcCCCcEEEEEecC
Q 023801 103 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTI--TGAGKFLKEKNPNIKLYGIEPT 163 (277)
Q Consensus 103 ~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~--aGi~~~~~~~~~~~~vigV~~~ 163 (277)
|.+ .+=+.-+..|.+++| +++.+++-+|-|+.+ ..+..++++ ....=.+.++.
T Consensus 206 ---Plt-~~T~~li~~~~~~~m--k~ga~lIN~aRG~vVde~AL~~AL~~--g~i~gAaLDVf 260 (317)
T PRK06487 206 ---PLT-EHTRHLIGARELALM--KPGALLINTARGGLVDEQALADALRS--GHLGGAATDVL 260 (317)
T ss_pred ---CCC-hHHhcCcCHHHHhcC--CCCeEEEECCCccccCHHHHHHHHHc--CCeeEEEeecC
Confidence 222 223567788999998 589999999999986 455566664 22333445443
No 462
>PRK07454 short chain dehydrogenase; Provisional
Probab=41.16 E-value=2e+02 Score=23.57 Aligned_cols=71 Identities=18% Similarity=0.176 Sum_probs=41.8
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCH-HHHHHHHHcCCEEEEeCC-CCChHHHHHHHHHHHHh
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILRAFGAELVLTDP-AKGMKGAVQKAEEILAK 93 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~-~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~~~~~ 93 (277)
+.+|+..+|.-|.+++......|.+++++....... .....++..+.++..+.. -.+.+...+..++..++
T Consensus 8 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (241)
T PRK07454 8 RALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQ 80 (241)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 568888999999999999999999877765432111 112334445656644432 12334443444444443
No 463
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=41.16 E-value=1.3e+02 Score=28.00 Aligned_cols=52 Identities=19% Similarity=0.084 Sum_probs=38.9
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCC-eEEEEeCCC-----CCHHHHHHHHHcCCEEEEe
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPAS-----MSLERRIILRAFGAELVLT 74 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl-~~~vvvp~~-----~~~~~~~~~~~~Ga~v~~~ 74 (277)
++|+.-.+||.|.-+|..+.++|. +++++.... ........++..|.+++.-
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~~ 331 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEWL 331 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEec
Confidence 458888999999999999999998 677775432 1334456677788887654
No 464
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=41.11 E-value=2.5e+02 Score=24.64 Aligned_cols=52 Identities=17% Similarity=0.091 Sum_probs=31.6
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
.|+..+++..+...+..+- ..-.-.|++|......-....+.+|++++.++-
T Consensus 73 ~i~~~~G~~~~l~~~~~~l-~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~ 124 (346)
T TIGR01141 73 QILLGNGSDEIIELLIRAF-LEPGDAVLVPPPTYSMYEISAKIHGAEVVKVPL 124 (346)
T ss_pred HEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCCHHHHHHHHHHcCCeEEEecc
Confidence 4676677777765544332 222244566654444445567889999998874
No 465
>PRK05866 short chain dehydrogenase; Provisional
Probab=41.08 E-value=2.1e+02 Score=24.71 Aligned_cols=53 Identities=11% Similarity=0.031 Sum_probs=35.0
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEe
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLT 74 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~-~~~~~~~~~~Ga~v~~~ 74 (277)
.+.+|+..+|--|.++|......|.+++++...... ......++..|.++..+
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~ 94 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAV 94 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEE
Confidence 357888899999999999999999987776543211 11123334456665544
No 466
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.07 E-value=2.1e+02 Score=23.77 Aligned_cols=69 Identities=13% Similarity=0.080 Sum_probs=44.2
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHh
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAK 93 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~ 93 (277)
++.+|+..+|--|.++|..-...|.++++.... ++.+.+.++..+...+.+|-. +.++..+...+..++
T Consensus 8 k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~--~~~~~~~l~~~~~~~~~~Dl~-~~~~~~~~~~~~~~~ 76 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFLREGAKVAVLYNS--AENEAKELREKGVFTIKCDVG-NRDQVKKSKEVVEKE 76 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC--cHHHHHHHHhCCCeEEEecCC-CHHHHHHHHHHHHHH
Confidence 367899999999999999999999887665433 234445555556666666642 334444444444443
No 467
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=41.06 E-value=1.9e+02 Score=24.89 Aligned_cols=85 Identities=18% Similarity=0.165 Sum_probs=44.0
Q ss_pred HcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHH--HHHhhhC-CCCCEEEEecCCchhHH
Q 023801 66 AFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP--ELWKGSG-GRIDALVSGIGTGGTIT 142 (277)
Q Consensus 66 ~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~--Ei~~Q~~-~~~d~iv~pvG~Gg~~a 142 (277)
.-|-.|.++++.. .-..+.+..+.+++|+.-++...+ ||-+--. .|.+.+. ..||.++|+.|.-.==-
T Consensus 106 ~~~~~vfllGgkp--~V~~~a~~~l~~~~p~l~ivg~h~-------GYf~~~e~~~i~~~I~~s~pdil~VgmG~P~QE~ 176 (253)
T COG1922 106 EEGKRVFLLGGKP--GVAEQAAAKLRAKYPGLKIVGSHD-------GYFDPEEEEAIVERIAASGPDILLVGMGVPRQEI 176 (253)
T ss_pred ccCceEEEecCCH--HHHHHHHHHHHHHCCCceEEEecC-------CCCChhhHHHHHHHHHhcCCCEEEEeCCCchhHH
Confidence 3356688887532 233445566666776444433222 2222222 3444443 36999999998865443
Q ss_pred HHHHHHhhcCCCcEEEEE
Q 023801 143 GAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 143 Gi~~~~~~~~~~~~vigV 160 (277)
=|...... .+..=.+||
T Consensus 177 wi~~~~~~-~~~~v~igV 193 (253)
T COG1922 177 WIARNRQQ-LPVAVAIGV 193 (253)
T ss_pred HHHHhHHh-cCCceEEec
Confidence 34333332 333444555
No 468
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=41.03 E-value=2.5e+02 Score=24.59 Aligned_cols=72 Identities=24% Similarity=0.281 Sum_probs=48.9
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHH-HHHHHcCC-E-EEEeCC-CCChHHHHHHHHHHHHhC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR-IILRAFGA-E-LVLTDP-AKGMKGAVQKAEEILAKT 94 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~-~~~~~~Ga-~-v~~~~~-~~~~~~~~~~a~~~~~~~ 94 (277)
..+||..|.--|.++|+.-.+.|.+.++++.......++ +.++..++ + ++...- -.+.+++.+......++.
T Consensus 14 vVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f 89 (282)
T KOG1205|consen 14 VVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF 89 (282)
T ss_pred EEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence 578888888899999999999999999998877676766 67766654 3 444331 123444444444444444
No 469
>PRK06483 dihydromonapterin reductase; Provisional
Probab=41.00 E-value=2e+02 Score=23.52 Aligned_cols=67 Identities=21% Similarity=0.248 Sum_probs=43.9
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHH
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILA 92 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~ 92 (277)
+.+|+..+|--|+++|..-...|.+++++-... ......++..|++.+.+|-. +.++..+...+..+
T Consensus 4 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~ 70 (236)
T PRK06483 4 PILITGAGQRIGLALAWHLLAQGQPVIVSYRTH--YPAIDGLRQAGAQCIQADFS-TNAGIMAFIDELKQ 70 (236)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCeEEEEeCCc--hhHHHHHHHcCCEEEEcCCC-CHHHHHHHHHHHHh
Confidence 568999999999999999989999877764332 22345556678777777642 33333333344433
No 470
>PRK07060 short chain dehydrogenase; Provisional
Probab=40.94 E-value=1.6e+02 Score=24.18 Aligned_cols=52 Identities=23% Similarity=0.184 Sum_probs=36.8
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHH-HHcCCEEEEeCC
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIIL-RAFGAELVLTDP 76 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~-~~~Ga~v~~~~~ 76 (277)
.+.+|+..+|.-|..++......|.+++++... ..+...+ +..+.+++.++-
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~---~~~~~~~~~~~~~~~~~~D~ 62 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARN---AAALDRLAGETGCEPLRLDV 62 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCeEEEecC
Confidence 367888889999999999999999986665432 2333333 445777777664
No 471
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=40.84 E-value=2.4e+02 Score=24.36 Aligned_cols=53 Identities=15% Similarity=0.098 Sum_probs=35.4
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
..++..++|..+...+..+- .+-.-+|+++......-...++..|.+++.++.
T Consensus 60 ~~~~~~~~~t~a~~~~~~~~-~~~g~~vl~~~~~~~~~~~~~~~~~~~~~~i~~ 112 (350)
T cd00609 60 EEIVVTNGAQEALSLLLRAL-LNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPL 112 (350)
T ss_pred ceEEEecCcHHHHHHHHHHh-CCCCCEEEEcCCCchhHHHHHHHCCCEEEEEec
Confidence 34666666666655554443 333455777777666677788899999988874
No 472
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=40.75 E-value=1.5e+02 Score=25.73 Aligned_cols=63 Identities=8% Similarity=0.085 Sum_probs=39.9
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEe---CCCC-CHH----HHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITM---PASM-SLE----RRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKT 94 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvv---p~~~-~~~----~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 94 (277)
+.+++... +..|.++++|++.+-+. |+.. ++. -++.++..|..++++.... .. +.++.++++.
T Consensus 178 ~~~v~~H~-----af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~--~~--~~~~~ia~~~ 248 (287)
T cd01137 178 RKLVTSEG-----AFSYFAKAYGLKEAYLWPINTEEEGTPKQVATLIEQVKKEKVPAVFVESTV--ND--RLMKQVAKET 248 (287)
T ss_pred CEEEEecc-----cHHHHHHHcCCeEeecccCCCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC--Ch--HHHHHHHHHh
Confidence 34555543 67899999999987654 2322 222 2556788999999998632 22 3445566655
No 473
>PRK05764 aspartate aminotransferase; Provisional
Probab=40.70 E-value=2.2e+02 Score=25.50 Aligned_cols=52 Identities=19% Similarity=0.166 Sum_probs=32.9
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
.++..+++..+..+++.+- ..-.-.|+++......-....+.+|++++.++.
T Consensus 93 ~i~~~~g~~~a~~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~ 144 (393)
T PRK05764 93 QVIVTTGAKQALYNAFMAL-LDPGDEVIIPAPYWVSYPEMVKLAGGVPVFVPT 144 (393)
T ss_pred HEEEeCCcHHHHHHHHHHh-cCCCCEEEecCCCCcchHHHHHHcCCEEEEEec
Confidence 3677777777776665543 222234566654444556667889999998874
No 474
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=40.49 E-value=2.4e+02 Score=24.29 Aligned_cols=53 Identities=26% Similarity=0.283 Sum_probs=36.8
Q ss_pred cCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023801 15 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 71 (277)
Q Consensus 15 ~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v 71 (277)
.+.+.+|.+.+|...+|.-|.++...++..|.+.+++.+ ..+...++.+|+..
T Consensus 134 ~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~v~~~~~----~~~~~~~~~~g~~~ 186 (331)
T cd08273 134 AAKVLTGQRVLIHGASGGVGQALLELALLAGAEVYGTAS----ERNHAALRELGATP 186 (331)
T ss_pred hcCCCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC----HHHHHHHHHcCCeE
Confidence 356777756555555799999999999999987555432 45566667788653
No 475
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=40.48 E-value=2.1e+02 Score=23.73 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=35.3
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 75 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~-~~~~~~~~~~Ga~v~~~~ 75 (277)
.+.+|+..+|--|.++|..-...|.+++++...... +.....++..+.+++.+.
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~ 67 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIA 67 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 367899999999999999988899987655432111 112233455677765554
No 476
>PTZ00377 alanine aminotransferase; Provisional
Probab=40.48 E-value=3.1e+02 Score=25.64 Aligned_cols=53 Identities=13% Similarity=0.058 Sum_probs=36.9
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
..|+..+++.++..+++.+-...=.-.|++|.-.-+.-...++.+|++++.++
T Consensus 139 ~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~~~~~~~g~~~v~v~ 191 (481)
T PTZ00377 139 SDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAITLLGGKQVPYY 191 (481)
T ss_pred hhEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhHHHHHHHcCCEEEEEE
Confidence 35888888888888877654211123466666556666778889999999886
No 477
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=40.46 E-value=1.1e+02 Score=26.55 Aligned_cols=58 Identities=19% Similarity=0.183 Sum_probs=38.3
Q ss_pred CCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCH----HHHHHHHHcCCEEEEeCC
Q 023801 18 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL----ERRIILRAFGAELVLTDP 76 (277)
Q Consensus 18 l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~----~~~~~~~~~Ga~v~~~~~ 76 (277)
+.+| .+|.|.+...+...+-..+...|.+..|++.++.|. .....+...|-.+.++..
T Consensus 107 I~~g-~~ILTh~~S~tv~~~l~~A~~~gk~~~V~v~EsrP~~qG~~la~eL~~~GI~vtlI~D 168 (275)
T PRK08335 107 IDDG-DVIITHSFSSAVLEILKTAKRKGKRFKVILTESAPDYEGLALANELEFLGIEFEVITD 168 (275)
T ss_pred cCCC-CEEEEECCcHHHHHHHHHHHHcCCceEEEEecCCCchhHHHHHHHHHHCCCCEEEEec
Confidence 3444 457777655555555666777888888888776552 235556777888888764
No 478
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=40.33 E-value=1.4e+02 Score=24.48 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=22.4
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchH-HHHHHHH--HHHCCCeEEEE
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNT-GIGLAFM--AAAKQYRLIIT 51 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~-g~a~A~a--a~~~Gl~~~vv 51 (277)
|.|.+.......+++ +.++.+.+|.+..||. |-+++.+ .+.+++.+.++
T Consensus 27 ME~Ag~~va~~i~~~--~~~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v~V~~~ 78 (205)
T TIGR00197 27 MENAGKAVAQAVLQA--FPLAGHVIIFCGPGNNGGDGFVVARHLKGFGVEVFLL 78 (205)
T ss_pred HHHHHHHHHHHHHHH--cCCCCeEEEEECCCCCccHHHHHHHHHHhCCCEEEEE
Confidence 345555555554443 1122245666666654 3444433 33344444443
No 479
>PRK08361 aspartate aminotransferase; Provisional
Probab=40.12 E-value=2e+02 Score=25.86 Aligned_cols=51 Identities=12% Similarity=-0.034 Sum_probs=33.1
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
.|+..+++..+..+++.+- ..-.-.|++|...-..-...++..|++++.++
T Consensus 95 ~i~~t~G~~~al~~~~~~l-~~~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~ 145 (391)
T PRK08361 95 NVIVTAGAYEATYLAFESL-LEEGDEVIIPDPAFVCYVEDAKIAEAKPIRIP 145 (391)
T ss_pred cEEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCCcccHHHHHHcCCEEEEEe
Confidence 4777777788877666543 22223566665444445567778999998886
No 480
>PRK14012 cysteine desulfurase; Provisional
Probab=40.11 E-value=1.7e+02 Score=26.57 Aligned_cols=53 Identities=19% Similarity=0.122 Sum_probs=32.4
Q ss_pred EEEeeCCchHHHHHHHHHHH---CCCeEEEEeCCCCCHHH---HHHHHHcCCEEEEeCC
Q 023801 24 VLIEPTSGNTGIGLAFMAAA---KQYRLIITMPASMSLER---RIILRAFGAELVLTDP 76 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~---~Gl~~~vvvp~~~~~~~---~~~~~~~Ga~v~~~~~ 76 (277)
.++..++|..+..++..+-. .+-.-.|+++....+.. ...++..|++++.++.
T Consensus 68 ~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~ 126 (404)
T PRK14012 68 EIVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDP 126 (404)
T ss_pred eEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEcc
Confidence 47778888888877765432 23224566655444333 2334556999998864
No 481
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=40.09 E-value=2.1e+02 Score=23.44 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=35.9
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCH-HHHHHHHHcCCEEEEeC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILRAFGAELVLTD 75 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~-~~~~~~~~~Ga~v~~~~ 75 (277)
+.+|+..+|..|.+++......|.+++++.....+. .....++..|.+++.+.
T Consensus 9 ~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (239)
T PRK07666 9 NALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIAT 62 (239)
T ss_pred EEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEE
Confidence 568899999999999999888999877765432111 12334455676776543
No 482
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=40.07 E-value=55 Score=26.29 Aligned_cols=42 Identities=29% Similarity=0.338 Sum_probs=31.2
Q ss_pred hchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEEe
Q 023801 114 ETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIE 161 (277)
Q Consensus 114 ~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV~ 161 (277)
...+.++.+| +-.||.|+.=.|=|-+ ..+|+..|+.++++-.
T Consensus 54 ~~a~~~L~~~-Gf~PDvI~~H~GWGe~-----Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 54 ARAARQLRAQ-GFVPDVIIAHPGWGET-----LFLKDVFPDAPLIGYF 95 (171)
T ss_pred HHHHHHHHHc-CCCCCEEEEcCCcchh-----hhHHHhCCCCcEEEEE
Confidence 3444455554 4569999988887765 4899999999999875
No 483
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=40.05 E-value=2.1e+02 Score=23.55 Aligned_cols=53 Identities=13% Similarity=0.184 Sum_probs=36.6
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCH-HHHHHHHHcCCEEEEeC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILRAFGAELVLTD 75 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~-~~~~~~~~~Ga~v~~~~ 75 (277)
+.+|+..+|.-|.++|-.-...|.+++++....... .....++..+.+++.+.
T Consensus 6 ~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 59 (258)
T PRK12429 6 VALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVA 59 (258)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 678899999999999999888999887765443222 22334455676665443
No 484
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=39.93 E-value=1.8e+02 Score=26.37 Aligned_cols=112 Identities=18% Similarity=0.209 Sum_probs=52.8
Q ss_pred CeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChH--HHHHHHHHHHHhCC-CeEecCCC-CCCcchhhhhhchHHHHH
Q 023801 46 YRLIITMPASMSLERRIILRAFGAELVLTDPAKGMK--GAVQKAEEILAKTP-NAYMLQQF-ENPANPKIHYETTGPELW 121 (277)
Q Consensus 46 l~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~--~~~~~a~~~~~~~~-~~~~~~~~-~~~~~~~~g~~t~~~Ei~ 121 (277)
.|..|+.-.+.-..--..++.+|-++.++.+...++ ...+...+..++.+ ........ .||.. . ...-+.+.+
T Consensus 6 ~p~~i~~G~g~~~~l~~~~~~~~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~--~-~v~~~~~~~ 82 (382)
T cd08187 6 NPTKIIFGKGTESELGKELKKYGKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRL--E-TVREGIELC 82 (382)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCH--H-HHHHHHHHH
Confidence 455566555554444566677788887775422232 12333333334331 12212111 13332 1 111223333
Q ss_pred hhhCCCCCEEEEecCCchhHHHHHHHHhhc-----------------CCCcEEEEEecCC
Q 023801 122 KGSGGRIDALVSGIGTGGTITGAGKFLKEK-----------------NPNIKLYGIEPTE 164 (277)
Q Consensus 122 ~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~-----------------~~~~~vigV~~~~ 164 (277)
++ .++|. |+++|+|+.+ =++++.... .+.+++|+|-+..
T Consensus 83 ~~--~~~D~-IIaiGGGS~i-D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTa 138 (382)
T cd08187 83 KE--EKVDF-ILAVGGGSVI-DSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLA 138 (382)
T ss_pred HH--cCCCE-EEEeCChHHH-HHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCC
Confidence 43 35776 5678877654 334433221 2456888887643
No 485
>PRK15452 putative protease; Provisional
Probab=39.86 E-value=3.2e+02 Score=25.58 Aligned_cols=104 Identities=14% Similarity=0.062 Sum_probs=58.1
Q ss_pred EEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC--------Ch-HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHH
Q 023801 48 LIITMPASMSLERRIILRAFGAELVLTDPAK--------GM-KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 118 (277)
Q Consensus 48 ~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~--------~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 118 (277)
..+.+|-+ +..++...-.+||+-+.++... .| .+-++.+.+++.+.+...|+.-- ..+....-....
T Consensus 4 peLlapag-~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n---~i~~e~el~~~~ 79 (443)
T PRK15452 4 PELLSPAG-TLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVN---IAPHNAKLKTFI 79 (443)
T ss_pred cEEEEECC-CHHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEec---CcCCHHHHHHHH
Confidence 35666766 4455556667899999886521 11 12345556666666444544211 111122222233
Q ss_pred HHHhhhC-CCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEEe
Q 023801 119 ELWKGSG-GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIE 161 (277)
Q Consensus 119 Ei~~Q~~-~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV~ 161 (277)
+.++++. -.+|.|++.- .|+...+++..|+.+|++=.
T Consensus 80 ~~l~~l~~~gvDgvIV~d------~G~l~~~ke~~p~l~ih~st 117 (443)
T PRK15452 80 RDLEPVIAMKPDALIMSD------PGLIMMVREHFPEMPIHLSV 117 (443)
T ss_pred HHHHHHHhCCCCEEEEcC------HHHHHHHHHhCCCCeEEEEe
Confidence 4445542 2489998863 57778888877877877643
No 486
>PRK08264 short chain dehydrogenase; Validated
Probab=39.85 E-value=1.6e+02 Score=24.14 Aligned_cols=31 Identities=13% Similarity=0.126 Sum_probs=26.4
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCC-eEEEEeC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQY-RLIITMP 53 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl-~~~vvvp 53 (277)
+.+|+..+|.-|.++|....+.|. +++++..
T Consensus 8 ~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r 39 (238)
T PRK08264 8 VVLVTGANRGIGRAFVEQLLARGAAKVYAAAR 39 (238)
T ss_pred EEEEECCCchHHHHHHHHHHHCCcccEEEEec
Confidence 678999999999999999999998 7666543
No 487
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=39.78 E-value=1.3e+02 Score=30.27 Aligned_cols=52 Identities=21% Similarity=0.114 Sum_probs=38.6
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCe-EEEEeCCCC-----CHHHHHHHHHcCCEEEEe
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYR-LIITMPASM-----SLERRIILRAFGAELVLT 74 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~-~~vvvp~~~-----~~~~~~~~~~~Ga~v~~~ 74 (277)
++||.-.+||.|.-+|..+.++|.+ ++++.+... ....+..++..|.+++..
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~~~GV~i~~~ 628 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFLTL 628 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCEEEec
Confidence 4689999999999999999999998 777765421 223345567778777654
No 488
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=39.76 E-value=46 Score=30.76 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=24.5
Q ss_pred EEeeCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 023801 25 LIEPTSGNTGIGLAFMAAAKQYRLIITMPAS 55 (277)
Q Consensus 25 vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~ 55 (277)
||...+|-.|.+.|.+|++.|.++.++-+..
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~ 32 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAKVLLIEKGG 32 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS-EEEE-SSS
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEECCc
Confidence 7889999999999999999999999986554
No 489
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=39.75 E-value=51 Score=27.27 Aligned_cols=55 Identities=18% Similarity=0.220 Sum_probs=40.2
Q ss_pred cCCCCCCCcEEEeeCCch----HHHHHHHHHHHC-CCeEEEEeCCCCCHHHHHHHHHcCC
Q 023801 15 KGLITPGESVLIEPTSGN----TGIGLAFMAAAK-QYRLIITMPASMSLERRIILRAFGA 69 (277)
Q Consensus 15 ~g~l~~g~~~vv~aSsGN----~g~a~A~aa~~~-Gl~~~vvvp~~~~~~~~~~~~~~Ga 69 (277)
.|-+.+|...+++...|. .+...++.+.+. |-+|..|.-+..+..-++.++.+|.
T Consensus 13 ~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~ 72 (226)
T PF06745_consen 13 GGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGW 72 (226)
T ss_dssp TTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS
T ss_pred cCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCC
Confidence 355677777888887776 777777777777 9999888877777777888888886
No 490
>PRK08278 short chain dehydrogenase; Provisional
Probab=39.60 E-value=2.3e+02 Score=23.92 Aligned_cols=53 Identities=17% Similarity=0.211 Sum_probs=37.1
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCH--------HHHHHHHHcCCEEEEeC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--------ERRIILRAFGAELVLTD 75 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~--------~~~~~~~~~Ga~v~~~~ 75 (277)
+.+|+..+|--|.++|....+.|.+++++.....+. .-...++..|.+++.+.
T Consensus 8 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 68 (273)
T PRK08278 8 TLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLV 68 (273)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEE
Confidence 678888999999999999999999887776543211 11234556777766543
No 491
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=39.58 E-value=1.6e+02 Score=25.56 Aligned_cols=47 Identities=23% Similarity=0.290 Sum_probs=29.4
Q ss_pred CCcEEEeeCCchHHHHHHHHHHHCC-CeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 21 GESVLIEPTSGNTGIGLAFMAAAKQ-YRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 21 g~~~vv~aSsGN~g~a~A~aa~~~G-l~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
|.+.+|...+|--|.+++..|+.+| .+.+++... ..+...++.+|++
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~---~~~~~~~~~~g~~ 197 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASR---PESIAWVKELGAD 197 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCC---hhhHHHHHhcCCc
Confidence 6555555557888888888888888 665444222 2345555666664
No 492
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=39.48 E-value=2.2e+02 Score=23.67 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=37.4
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCH--HHHHHHHHcCCEEEEe
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRIILRAFGAELVLT 74 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~--~~~~~~~~~Ga~v~~~ 74 (277)
.+.+|+..+|.-|.++|....+.|.++++......+. .....++..|.++..+
T Consensus 8 k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~ 62 (261)
T PRK08936 8 KVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAV 62 (261)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 3678999999999999999999998877665533221 2234455667776544
No 493
>PRK08013 oxidoreductase; Provisional
Probab=39.36 E-value=90 Score=28.36 Aligned_cols=30 Identities=13% Similarity=0.186 Sum_probs=27.4
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMP 53 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp 53 (277)
.|+...+|-.|.++|++-++.|++++|+=.
T Consensus 5 dV~IvGaGpaGl~~A~~La~~G~~v~viE~ 34 (400)
T PRK08013 5 DVVIAGGGMVGLAVACGLQGSGLRVAVLEQ 34 (400)
T ss_pred CEEEECcCHHHHHHHHHHhhCCCEEEEEeC
Confidence 389999999999999999999999999853
No 494
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=39.31 E-value=2.1e+02 Score=23.26 Aligned_cols=53 Identities=25% Similarity=0.227 Sum_probs=36.6
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHH-HHHHHHHcCCEEEEeC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE-RRIILRAFGAELVLTD 75 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~-~~~~~~~~Ga~v~~~~ 75 (277)
+.+|+..+|.-|..++..-...|..++++........ ....++..|.++..+.
T Consensus 7 ~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (246)
T PRK05653 7 TALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLV 60 (246)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEE
Confidence 6789999999999999998889999655544322211 1344556777776643
No 495
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=39.29 E-value=45 Score=30.40 Aligned_cols=31 Identities=16% Similarity=0.256 Sum_probs=25.4
Q ss_pred EEeeCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 023801 25 LIEPTSGNTGIGLAFMAAAKQYRLIITMPAS 55 (277)
Q Consensus 25 vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~ 55 (277)
||.-.+|..|.+.|..|++.|.+++++-...
T Consensus 2 VvVIG~G~AGl~AA~~Aae~G~~V~lvek~~ 32 (417)
T PF00890_consen 2 VVVIGGGLAGLAAAIEAAEAGAKVLLVEKGP 32 (417)
T ss_dssp EEEE-SSHHHHHHHHHHHHTTT-EEEEESSS
T ss_pred EEEECCCHHHHHHHHHHhhhcCeEEEEEeec
Confidence 7888999999999999999999988885443
No 496
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=39.14 E-value=2.4e+02 Score=25.58 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=28.5
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS 55 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~ 55 (277)
+.++.-.+|..|.-+|...+.+|.+++++.+..
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~ 177 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAA 177 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 358888899999999999999999999887643
No 497
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=38.88 E-value=2.2e+02 Score=25.54 Aligned_cols=52 Identities=15% Similarity=0.025 Sum_probs=32.7
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
.|+..+++.++..++..+- +.-.-.|++|.-.-..-....+.+|++++.++-
T Consensus 95 ~ii~t~G~~~~i~~~~~~~-~~~gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~~ 146 (385)
T PRK09276 95 EVISLIGSKEGIAHIPLAF-VNPGDVVLVPDPGYPVYKIGTIFAGGEPYFMPL 146 (385)
T ss_pred cEEEccCcHHHHHHHHHHh-CCCCCEEEEcCCCCcChHHHHHHcCCEEEEEec
Confidence 3676677778877765442 222234556654444455567789999988763
No 498
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=38.85 E-value=2.5e+02 Score=25.68 Aligned_cols=98 Identities=19% Similarity=0.202 Sum_probs=47.6
Q ss_pred CeEEEEeCCCCCHHHHHHHHHcCC-EEE-EeCCCCChHHHHHHHHHHHHhCCCeE--ecCCCCCCcchhhhhhchHHHHH
Q 023801 46 YRLIITMPASMSLERRIILRAFGA-ELV-LTDPAKGMKGAVQKAEEILAKTPNAY--MLQQFENPANPKIHYETTGPELW 121 (277)
Q Consensus 46 l~~~vvvp~~~~~~~~~~~~~~Ga-~v~-~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~g~~t~~~Ei~ 121 (277)
++..++.-.+.-..-...++.+|. ++. ++++.-.-....+...+..++.+-.+ |-.-..||.. ....-+.|.+
T Consensus 6 ~p~~i~fG~g~l~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~---~~v~~~~~~~ 82 (377)
T COG1454 6 LPTEILFGRGSLKELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTI---ETVEAGAEVA 82 (377)
T ss_pred cCceEEecCChHHHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCH---HHHHHHHHHH
Confidence 445556556655555666666663 333 33431111122333333334432122 2222234432 3345566777
Q ss_pred hhhCCCCCEEEEecCCchhHHHHHHHHhh
Q 023801 122 KGSGGRIDALVSGIGTGGTITGAGKFLKE 150 (277)
Q Consensus 122 ~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~ 150 (277)
++. ++|.|| ++|+|+.+ -++++..-
T Consensus 83 ~~~--~~D~iI-alGGGS~~-D~AK~i~~ 107 (377)
T COG1454 83 REF--GPDTII-ALGGGSVI-DAAKAIAL 107 (377)
T ss_pred Hhc--CCCEEE-EeCCccHH-HHHHHHHH
Confidence 764 688765 77777654 55555443
No 499
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=38.83 E-value=1.7e+02 Score=25.94 Aligned_cols=54 Identities=13% Similarity=0.059 Sum_probs=32.4
Q ss_pred cEEEeeCCchHHHHHHHHHHHCC--CeEEEEeCCCCCHHH----HHHHHHcCCEEEEeCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQ--YRLIITMPASMSLER----RIILRAFGAELVLTDP 76 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~G--l~~~vvvp~~~~~~~----~~~~~~~Ga~v~~~~~ 76 (277)
..++..+++..+..++..+-..+ -.-.|+++....... ....+.+|++++.++.
T Consensus 62 ~~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 121 (373)
T cd06453 62 DEIIFTRNTTEAINLVAYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPV 121 (373)
T ss_pred CeEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeec
Confidence 35777788888877666554332 223455655443332 2233578999998874
No 500
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=38.80 E-value=2.6e+02 Score=24.20 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=45.1
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHH-----HHcCCEEEEeCC-CCChHHHHHHHHHHHHh
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIIL-----RAFGAELVLTDP-AKGMKGAVQKAEEILAK 93 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~-----~~~Ga~v~~~~~-~~~~~~~~~~a~~~~~~ 93 (277)
.+.|||.-|+.-|.++|---++.|.+++++-... .|+..+ +.+|-++...+- -.+.++..+...++..+
T Consensus 7 ~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~---~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~ 81 (265)
T COG0300 7 KTALITGASSGIGAELAKQLARRGYNLILVARRE---DKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKER 81 (265)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcH---HHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhc
Confidence 3789999999999999999999999999986654 333222 345666655442 12334444444455443
Done!