RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 023801
(277 letters)
>gnl|CDD|166206 PLN02565, PLN02565, cysteine synthase.
Length = 322
Score = 511 bits (1318), Expect = 0.0
Identities = 244/275 (88%), Positives = 264/275 (96%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RIGYSMI+DAE KGLI PGESVLIEPTSGNTGIGLAFMAAAK Y+LIITMPASMSLERRI
Sbjct: 48 RIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRI 107
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
IL AFGAELVLTDPAKGMKGAVQKAEEILAKTPN+Y+LQQFENPANPKIHYETTGPE+WK
Sbjct: 108 ILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPEIWK 167
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
G+GG++DA VSGIGTGGTITGAGK+LKE+NP+IKLYG+EP ES VLSGGKPGPHKIQGIG
Sbjct: 168 GTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPHKIQGIG 227
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
AGF+PGVL+V+++DEVVQVSSDEAIETAKLLALKEGL VGISSG AAAAAI+IAKRPENA
Sbjct: 228 AGFIPGVLDVDLLDEVVQVSSDEAIETAKLLALKEGLLVGISSGAAAAAAIKIAKRPENA 287
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFEA 277
GKLIVVIFPSFGERYLSSVLFESV+KEAE+M FE
Sbjct: 288 GKLIVVIFPSFGERYLSSVLFESVKKEAENMVFEP 322
>gnl|CDD|233286 TIGR01136, cysKM, cysteine synthase. This model discriminates
cysteine synthases (EC 2.5.1.47) (both CysK and CysM)
from cystathionine beta-synthase, a protein found
primarily in eukaryotes and carrying a C-terminal CBS
domain lacking from this protein. Bacterial proteins
lacking the CBS domain but otherwise showing
resemblamnce to cystathionine beta-synthases and
considerable phylogenetic distance from known cysteine
synthases were excluded from the seed and score below
the trusted cutoff [Amino acid biosynthesis, Serine
family].
Length = 299
Score = 425 bits (1094), Expect = e-152
Identities = 169/262 (64%), Positives = 214/262 (81%), Gaps = 1/262 (0%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
RI SMI DAE +GL+ PG+ +IE TSGNTGI LA +AAAK Y+LI+TMP +MSLERR
Sbjct: 39 DRIALSMIEDAEKRGLLKPGD-TIIEATSGNTGIALAMVAAAKGYKLILTMPETMSLERR 97
Query: 62 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 121
+LRA+GAEL+LT +GMKGA+ KAEE+ A+T ML QFENPANP+ HY+TTGPE+W
Sbjct: 98 KLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIW 157
Query: 122 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 181
+ + GRID V+G+GTGGTITG G++LKE+NPNIK+ +EP ESPVLSGG+PGPHKIQGI
Sbjct: 158 RDTDGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVLSGGEPGPHKIQGI 217
Query: 182 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 241
GAGF+P +L++++IDEV+ VS ++AIETA+ LA +EG+ VGISSG A AAA+++AKR EN
Sbjct: 218 GAGFIPKILDLSLIDEVITVSDEDAIETARRLAREEGILVGISSGAAVAAALKLAKRLEN 277
Query: 242 AGKLIVVIFPSFGERYLSSVLF 263
A K+IV I P GERYLS+ LF
Sbjct: 278 ADKVIVAILPDTGERYLSTGLF 299
>gnl|CDD|233288 TIGR01139, cysK, cysteine synthase A. This model distinguishes
cysteine synthase A (CysK) from cysteine synthase B
(CysM). CysM differs in having a broader specificity
that also allows the use of thiosulfate to produce
cysteine thiosulfonate [Amino acid biosynthesis, Serine
family].
Length = 298
Score = 416 bits (1071), Expect = e-148
Identities = 174/263 (66%), Positives = 217/263 (82%), Gaps = 3/263 (1%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
RI +MI DAE +GL+ PG+ ++EPTSGNTGI LA +AAA+ Y+LI+TMP +MS+ERR
Sbjct: 38 DRIALNMIWDAEKRGLLKPGK-TIVEPTSGNTGIALAMVAAARGYKLILTMPETMSIERR 96
Query: 62 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAY-MLQQFENPANPKIHYETTGPEL 120
+L+A+GAELVLT A+GMKGA+ KAEEI A TPN+Y MLQQFENPANP+IH +TTGPE+
Sbjct: 97 KLLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEI 156
Query: 121 WKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQG 180
W+ + G++DA V+G+GTGGTITG G+ LKE+ PNIK+ +EP ESPVLSGGKPGPHKIQG
Sbjct: 157 WRDTDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLSGGKPGPHKIQG 216
Query: 181 IGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 240
IGAGF+P L ++IDEV+ VS +EAIETA+ LA +EG+ VGISSG A AAA+++AKRPE
Sbjct: 217 IGAGFIPKNLNRSVIDEVITVSDEEAIETARRLAAEEGILVGISSGAAVAAALKLAKRPE 276
Query: 241 NAGKLIVVIFPSFGERYLSSVLF 263
KLIVVI PS GERYLS+ LF
Sbjct: 277 -PDKLIVVILPSTGERYLSTPLF 298
>gnl|CDD|177651 PLN00011, PLN00011, cysteine synthase.
Length = 323
Score = 407 bits (1047), Expect = e-144
Identities = 191/274 (69%), Positives = 233/274 (85%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RI YSMI DAE KGLITPG+S LIE T+GNTGIGLA + AA+ Y++I+ MP++MSLERRI
Sbjct: 50 RIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIGLACIGAARGYKVILVMPSTMSLERRI 109
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
ILRA GAE+ LTD + G+KG ++KAEEIL+KTP Y+ QQFENPANP+IHY TTGPE+W+
Sbjct: 110 ILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGPEIWR 169
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
S G++D LV+G+GTGGT TG GKFLKEKN +IK+ +EP ES VLSGG+PGPH IQGIG
Sbjct: 170 DSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQPGPHLIQGIG 229
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
+G +P L++ I+DE++QV+ +EAIETAKLLALKEGL VGISSG AAAAA+++AKRPENA
Sbjct: 230 SGIIPFNLDLTIVDEIIQVTGEEAIETAKLLALKEGLLVGISSGAAAAAALKVAKRPENA 289
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 276
GKLIVVIFPS GERYLS+ LFESVR EAE++ E
Sbjct: 290 GKLIVVIFPSGGERYLSTKLFESVRYEAENLPIE 323
>gnl|CDD|178587 PLN03013, PLN03013, cysteine synthase.
Length = 429
Score = 403 bits (1035), Expect = e-141
Identities = 190/274 (69%), Positives = 229/274 (83%), Gaps = 1/274 (0%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RIGYSM++DAE KG I+PG+SVL+EPTSGNTGIGLAF+AA++ YRLI+TMPASMS+ERR+
Sbjct: 156 RIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRV 215
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
+L+AFGAELVLTDPAKGM GAVQKAEEIL TP+AYMLQQF+NPANPKIHYETTGPE+W
Sbjct: 216 LLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWD 275
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
+ G++D V+GIGTGGTITG G+F+KEKNP ++ G+EPTES +LSGGKPGPHKIQGIG
Sbjct: 276 DTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIG 335
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
AGF+P L+ I+DEV+ +SS+EAIETAK LALKEGL VGISSG AAAAAI++AKRPENA
Sbjct: 336 AGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENA 395
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 276
GKLI V + G R + + S+ +
Sbjct: 396 GKLIAVSLFASG-RDIYTPRCSSLSGKRWRKCSL 428
>gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine
beta-synthase (CBS) and Cysteine synthase. CBS is a
unique heme-containing enzyme that catalyzes a pyridoxal
5'-phosphate (PLP)-dependent condensation of serine and
homocysteine to give cystathionine. Deficiency of CBS
leads to homocystinuria, an inherited disease of sulfur
metabolism characterized by increased levels of the
toxic metabolite homocysteine. Cysteine synthase on the
other hand catalyzes the last step of cysteine
biosynthesis. This subgroup also includes an
O-Phosphoserine sulfhydrylase found in hyperthermophilic
archaea which produces L-cysteine from sulfide and the
more thermostable O-phospho-L-serine.
Length = 291
Score = 394 bits (1014), Expect = e-139
Identities = 156/260 (60%), Positives = 198/260 (76%), Gaps = 4/260 (1%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
RI MI DAE +GL+ PG + +IEPTSGNTGIGLA +AAAK YR II MP +MS E+R
Sbjct: 34 DRIALYMIEDAEKRGLLKPG-TTIIEPTSGNTGIGLAMVAAAKGYRFIIVMPETMSEEKR 92
Query: 62 IILRAFGAELVLTDPAK--GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPE 119
+LRA GAE++LT A+ GMKGA+ KA E+ A+TPNA+ L QFENPANP+ HYETT PE
Sbjct: 93 KLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPE 152
Query: 120 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQ 179
+W+ G++DA V+G+GTGGTITG ++LKEKNPN+++ G++P S + SGG PGPHKI+
Sbjct: 153 IWEQLDGKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLFSGGPPGPHKIE 212
Query: 180 GIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 239
GIGAGF+P L+ ++IDEVV+VS +EA A+ LA +EGL VG SSG A AAA+++AKR
Sbjct: 213 GIGAGFIPENLDRSLIDEVVRVSDEEAFAMARRLAREEGLLVGGSSGAAVAAALKLAKRL 272
Query: 240 ENAGKLIVVIFPSFGERYLS 259
GK IV I P GERYLS
Sbjct: 273 G-PGKTIVTILPDSGERYLS 291
>gnl|CDD|178171 PLN02556, PLN02556, cysteine synthase/L-3-cyanoalanine synthase.
Length = 368
Score = 390 bits (1003), Expect = e-137
Identities = 171/271 (63%), Positives = 220/271 (81%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R +MI DAE K LITPG++ LIEPTSGN GI LAFMAA K Y++I+TMP+ SLERR+
Sbjct: 92 RPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRV 151
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
+RAFGAELVLTDP KGM G V+KA E+L TP+A+MLQQF NPAN ++H+ETTGPE+W+
Sbjct: 152 TMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPEIWE 211
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
+ G++D V GIG+GGT++G GK+LK KNPN+K+YG+EP ES VL+GGKPGPH I G G
Sbjct: 212 DTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVLNGGKPGPHHITGNG 271
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
GF P +L+++++++V++VSS++A+ A+ LALKEGL VGISSG AA+ +AK PEN
Sbjct: 272 VGFKPDILDMDVMEKVLEVSSEDAVNMARELALKEGLMVGISSGANTVAALRLAKMPENK 331
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESM 273
GKLIV + PSFGERYLSSVLF+ +RKEAE+M
Sbjct: 332 GKLIVTVHPSFGERYLSSVLFQELRKEAENM 362
>gnl|CDD|223110 COG0031, CysK, Cysteine synthase [Amino acid transport and
metabolism].
Length = 300
Score = 369 bits (950), Expect = e-129
Identities = 154/260 (59%), Positives = 200/260 (76%), Gaps = 5/260 (1%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
RI MI DAE +GL+ PG ++E TSGNTGI LA +AAAK YRLII MP +MS ERR
Sbjct: 43 DRIALYMIEDAEKRGLLKPG-GTIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERR 101
Query: 62 IILRAFGAELVLTDPAKG-MKGAVQKAEEILAKTPN-AYMLQQFENPANPKIHYETTGPE 119
+LRA GAE++LT A G MKGA+++A+E+ A+ P A L QFENPANP+ HYETTGPE
Sbjct: 102 KLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPE 161
Query: 120 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQ 179
+W+ + G++DA V+G+GTGGTITG ++LKE+NPN+++ ++P S +LSGG+ GPHKI+
Sbjct: 162 IWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGE-GPHKIE 220
Query: 180 GIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 239
GIGAGFVP L++++IDEV++VS +EAI TA+ LA +EGL VGISSG A AAA+++AK
Sbjct: 221 GIGAGFVPENLDLDLIDEVIRVSDEEAIATARRLAREEGLLVGISSGAALAAALKLAKEL 280
Query: 240 ENAGKLIVVIFPSFGERYLS 259
AGK IV I P GERYLS
Sbjct: 281 P-AGKTIVTILPDSGERYLS 299
>gnl|CDD|182672 PRK10717, PRK10717, cysteine synthase A; Provisional.
Length = 330
Score = 296 bits (759), Expect = e-100
Identities = 116/276 (42%), Positives = 165/276 (59%), Gaps = 15/276 (5%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
R ++I DAE +GL+ PG ++E T+GNTGIGLA +AAA+ Y+ +I MP + S E++
Sbjct: 45 DRAALNIIWDAEKRGLLKPG-GTIVEGTAGNTGIGLALVAAARGYKTVIVMPETQSQEKK 103
Query: 62 IILRAFGAELVLT------DPAKGMKGAVQKAEEILAKTPN-AYMLQQFENPANPKIHYE 114
+LRA GAELVL +P +KGA + AEE++A PN A QF+NPAN + HYE
Sbjct: 104 DLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAHYE 163
Query: 115 TTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESP----VLSG 170
TTGPE+W+ + G++D V +GTGGT+ G ++LKE NP +K+ +PT S +G
Sbjct: 164 TTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALYSYYKTG 223
Query: 171 --GKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228
G +GIG G + LE ID+ +++ +EA+ TA L +EGL +G SSG
Sbjct: 224 ELKAEGSSITEGIGQGRITANLEGAPIDDAIRIPDEEALSTAYRLLEEEGLCLGGSSGIN 283
Query: 229 AAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFE 264
AAA+ +A+ G IV I GERY S +
Sbjct: 284 VAAALRLARE-LGPGHTIVTILCDSGERYQSKLFNP 318
>gnl|CDD|236972 PRK11761, cysM, cysteine synthase B; Provisional.
Length = 296
Score = 272 bits (699), Expect = 1e-91
Identities = 120/266 (45%), Positives = 165/266 (62%), Gaps = 17/266 (6%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R SMI AE +G I PG+ LIE TSGNTGI LA +AA K YR+ + MP +MS ERR
Sbjct: 45 RPALSMIVQAEKRGEIKPGD-TLIEATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRA 103
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
+RA+GAEL+L +GM+GA A ++ A+ +L QF NP NP HYETTGPE+W+
Sbjct: 104 AMRAYGAELILVPKEQGMEGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGPEIWR 162
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI- 181
+ GRI VS +GT GTI G ++LKE+NP +++ G++P E I GI
Sbjct: 163 QTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGS----------SIPGIR 212
Query: 182 --GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 239
++P + + + +D V+ VS EA T + LA +EG+F G+SSGGA AAA+ IA+
Sbjct: 213 RWPEEYLPKIFDASRVDRVLDVSQQEAENTMRRLAREEGIFCGVSSGGAVAAALRIAREN 272
Query: 240 ENAGKLIVVIFPSFGERYLSSVLFES 265
NA +IV I G+RYLS+ +F +
Sbjct: 273 PNA--VIVAIICDRGDRYLSTGVFPA 296
>gnl|CDD|130208 TIGR01138, cysM, cysteine synthase B. CysM differs from CysK in
that it can also use thiosulfate instead of sulfide, to
produce cysteine thiosulfonate instead of cysteine.
Alternate name: O-acetylserine (thiol)-lyase [Amino acid
biosynthesis, Serine family].
Length = 290
Score = 250 bits (641), Expect = 4e-83
Identities = 114/261 (43%), Positives = 166/261 (63%), Gaps = 11/261 (4%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R SMI +AE +G I PG+ VLIE TSGNTGI LA +AA K YR+ + MP +MS ER+
Sbjct: 41 RPALSMIVEAEKRGEIKPGD-VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKA 99
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
+RA+GAEL+L +GM+GA A E+ + L QF NP NP HY +TGPE+W+
Sbjct: 100 AMRAYGAELILVTKEEGMEGARDLALELANRGEGKL-LDQFNNPDNPYAHYTSTGPEIWQ 158
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
+GGRI VS +GT GTI G +FLKE+NP +++ G++P E + G I+
Sbjct: 159 QTGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSIPG-------IRRWP 211
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
++PG+ + +++D V+ + +A T + LA++EG+F G+SSGGA AAA+ +A+ E
Sbjct: 212 TEYLPGIFDASLVDRVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAAALRLAR--ELP 269
Query: 243 GKLIVVIFPSFGERYLSSVLF 263
++V I G+RYLS+ +F
Sbjct: 270 DAVVVAIICDRGDRYLSTGVF 290
>gnl|CDD|233287 TIGR01137, cysta_beta, cystathionine beta-synthase. Members of
this family closely resemble cysteine synthase but
contain an additional C-terminal CBS domain. The
function of any bacterial member included in this family
is proposed but not proven [Amino acid biosynthesis,
Serine family].
Length = 454
Score = 241 bits (616), Expect = 3e-77
Identities = 110/269 (40%), Positives = 164/269 (60%), Gaps = 11/269 (4%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RI MI DAEA G + PG +IEPTSGNTGIGLA +AA K Y+ II +P MS E+
Sbjct: 44 RIALRMIEDAEASGRLKPG-DTIIEPTSGNTGIGLALVAAIKGYKCIIVLPEKMSNEKVD 102
Query: 63 ILRAFGAELVLTDPAKGM---KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPE 119
+L+A GAE+V T A + + A+ ++ + P A++L Q+ NP+NP HY+ TGPE
Sbjct: 103 VLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGPE 162
Query: 120 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKP------ 173
+ + G++D V+G GTGGTITG ++LKE NP ++ G +P E +L+ +
Sbjct: 163 ILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADP-EGSILAQPENLNKTGR 221
Query: 174 GPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAI 233
P+K++GIG F+P VL+ ++DE ++ E+ + A+ L +EGL VG SSG A AA+
Sbjct: 222 TPYKVEGIGYDFIPTVLDRKVVDEWIKTDDKESFKMARRLIKEEGLLVGGSSGSAVVAAL 281
Query: 234 EIAKRPENAGKLIVVIFPSFGERYLSSVL 262
+ A+ ++IVV+ P Y++ L
Sbjct: 282 KAAEDELTEDQVIVVLLPDSIRNYMTKFL 310
>gnl|CDD|234409 TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate biosynthesis protein
SbnA. Members of this family include SbnA, a protein of
the staphyloferrin B biosynthesis operon of
Staphylococcus aureus. SbnA and SbnB together appear to
synthesize 2,3-diaminopropionate, a precursor of certain
siderophores and other secondary metabolites. SbnA is a
pyridoxal phosphate-dependent enzyme [Cellular
processes, Biosynthesis of natural products].
Length = 304
Score = 202 bits (515), Expect = 8e-64
Identities = 97/263 (36%), Positives = 144/263 (54%), Gaps = 8/263 (3%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R ++ A +G ITPG + +IE +SGN GI LA + A K R I + ++S +
Sbjct: 40 RPALYILEAAIKRGRITPG-TTIIESSSGNLGIALAMICAYKGLRFICVVDPNISPQNLK 98
Query: 63 ILRAFGAELVLT---DPAKGMKGA-VQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 118
+LRA+GAE+ D G G + + E+LA P+AY Q+ NP NP+ HY TG
Sbjct: 99 LLRAYGAEVEKVTEPDETGGYLGTRIARVRELLASIPDAYWPNQYANPDNPRAHYHGTGR 158
Query: 119 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKI 178
E+ + + +D L G+ T GT+ G + L+E+ PN K+ ++ S V+ GG PG I
Sbjct: 159 EIAR-AFPPLDYLFVGVSTTGTLMGCSRRLRERGPNTKVIAVDAVGS-VIFGGPPGRRHI 216
Query: 179 QGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKR 238
G+GA VP +L+ ++ID+VV V + + + LA +EG+ G SSG AA + R
Sbjct: 217 PGLGASVVPELLDESLIDDVVHVPEYDTVAGCRRLARREGILAGGSSGTVVAAIKRLLPR 276
Query: 239 PENAGKLIVVIFPSFGERYLSSV 261
G +V I P GERYL +V
Sbjct: 277 IP-PGSTVVAILPDRGERYLDTV 298
>gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily
(fold type II); this family of pyridoxal phosphate
(PLP)-dependent enzymes catalyzes beta-replacement and
beta-elimination reactions. This CD corresponds to
aminocyclopropane-1-carboxylate deaminase (ACCD),
tryptophan synthase beta chain (Trp-synth_B),
cystathionine beta-synthase (CBS), O-acetylserine
sulfhydrylase (CS), serine dehydratase (Ser-dehyd),
threonine dehydratase (Thr-dehyd), diaminopropionate
ammonia lyase (DAL), and threonine synthase (Thr-synth).
ACCD catalyzes the conversion of
1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate
and ammonia. Tryptophan synthase folds into a tetramer,
where the beta chain is the catalytic PLP-binding
subunit and catalyzes the formation of L-tryptophan from
indole and L-serine. CBS is a tetrameric hemeprotein
that catalyzes condensation of serine and homocysteine
to cystathionine. CS is a homodimer that catalyzes the
formation of L-cysteine from O-acetyl-L-serine.
Ser-dehyd catalyzes the conversion of L- or D-serine to
pyruvate and ammonia. Thr-dehyd is active as a homodimer
and catalyzes the conversion of L-threonine to
2-oxobutanoate and ammonia. DAL is also a homodimer and
catalyzes the alpha, beta-elimination reaction of both
L- and D-alpha, beta-diaminopropionate to form pyruvate
and ammonia. Thr-synth catalyzes the formation of
threonine and inorganic phosphate from
O-phosphohomoserine.
Length = 244
Score = 199 bits (508), Expect = 2e-63
Identities = 92/250 (36%), Positives = 126/250 (50%), Gaps = 41/250 (16%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R ++I AE +G + G V+IE T GNTGI LA AA + I MP S E+
Sbjct: 33 RGALNLILLAEEEGKLPKG--VIIESTGGNTGIALAAAAARLGLKCTIVMPEGASPEKVA 90
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
+RA GAE+VL A+ A+E+ + P AY + QF+NPAN T G E+ +
Sbjct: 91 QMRALGAEVVLVPG--DFDDAIALAKELAEEDPGAYYVNQFDNPANIAGQG-TIGLEILE 147
Query: 123 GSGG-RIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 181
GG + DA+V +G GG I G + LKE PN+K+ G+EP
Sbjct: 148 QLGGQKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEP------------------- 188
Query: 182 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 241
EVV VS +EA+E +LLA +EG+ V SS A AAA+++AK+
Sbjct: 189 ---------------EVVTVSDEEALEAIRLLAREEGILVEPSSAAALAAALKLAKKL-G 232
Query: 242 AGKLIVVIFP 251
GK +VVI
Sbjct: 233 KGKTVVVILT 242
>gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme. Members of
this family are all pyridoxal-phosphate dependent
enzymes. This family includes: serine dehydratase
EC:4.2.1.13 P20132, threonine dehydratase EC:4.2.1.16,
tryptophan synthase beta chain EC:4.2.1.20, threonine
synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8
P11096, cystathionine beta-synthase EC:4.2.1.22,
1-aminocyclopropane-1-carboxylate deaminase EC:4.1.99.4.
Length = 295
Score = 179 bits (457), Expect = 3e-55
Identities = 87/264 (32%), Positives = 132/264 (50%), Gaps = 22/264 (8%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R ++ A +G + ++E +SGNTG LA AA ++ I +P S + +
Sbjct: 38 RGAAYLLLRALERG------ATVVEASSGNTGRALAAAAARLGLKVTIVVPEGASPGKLL 91
Query: 63 ILRAFGAELVL---TDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPE 119
++RA GAE++L ++A E+LA L Q+ NP N Y+T G E
Sbjct: 92 LMRALGAEVILVVSEGDYDDALELAEEAAELLAAYDGPIPLGQYNNP-NVIAGYKTIGLE 150
Query: 120 LWK-GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGG------K 172
+ + G DA+V +G GG G + LKE P I++ G+EP +P L+
Sbjct: 151 ILEQLGQGDPDAVVVPVGGGGLAAGIARGLKELGPGIRVIGVEPEGAPALARSLEAGRRV 210
Query: 173 PGPHKIQGIGAGF-VPGVLEVNIIDE----VVQVSSDEAIETAKLLALKEGLFVGISSGG 227
P P I G+G G + G L + +IDE V VS +EA+E +LLA +EG+ V SS
Sbjct: 211 PKPTTIAGLGPGIPLDGELALELIDEYVGDVYAVSDEEALEAIRLLARREGILVEPSSAA 270
Query: 228 AAAAAIEIAKRPENAGKLIVVIFP 251
A AAA+ +A+ GK +VV+
Sbjct: 271 ALAAALRLAELELGKGKRVVVVLT 294
>gnl|CDD|215204 PLN02356, PLN02356, phosphateglycerate kinase.
Length = 423
Score = 108 bits (270), Expect = 6e-27
Identities = 89/315 (28%), Positives = 137/315 (43%), Gaps = 60/315 (19%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R+ +I +A G + PG V+ E ++G+T I LA +A A + + +P +++E+
Sbjct: 86 RVAVKIIEEALESGQLFPG-GVVTEGSAGSTAISLATVAPAYGCKCHVVIPDDVAIEKSQ 144
Query: 63 ILRAFGAELVLTDP-------------------AKGMKGAVQKAEEILAK---------- 93
IL A GA + P A + +K E
Sbjct: 145 ILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGCIS 204
Query: 94 ------------TPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTI 141
+ QFEN AN + HYE TGPE+W+ + G +DA V+ GTGGT+
Sbjct: 205 EEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTL 264
Query: 142 TGAGKFLKEKNPNIKLYGIEPTESPVLSG-------------GK----PGPHKIQGIGAG 184
G +FL+EKNPNIK + I+P S + + G+ P +GIG
Sbjct: 265 AGVSRFLQEKNPNIKCFLIDPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGIGIN 324
Query: 185 FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGK 244
+ + +D + + EA+E ++ L +GLFVG SS A+ +A+ G
Sbjct: 325 RLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFVGSSSAMNCVGAVRVAQSL-GPGH 383
Query: 245 LIVVIFPSFGERYLS 259
IV I G R+LS
Sbjct: 384 TIVTILCDSGMRHLS 398
>gnl|CDD|224092 COG1171, IlvA, Threonine dehydratase [Amino acid transport and
metabolism].
Length = 347
Score = 76.9 bits (190), Expect = 3e-16
Identities = 64/241 (26%), Positives = 100/241 (41%), Gaps = 32/241 (13%)
Query: 29 TSGNTGIGLAFMAAAKQY--RLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQK 86
++GN G+A+ AAK+ + I MP + + R +GAE++L A
Sbjct: 81 SAGNHAQGVAY--AAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGDNF--DDAYAA 136
Query: 87 AEEILAKTPNAYMLQQFENPANPKIH----YETTGPELWKGSGGRIDALVSGIGTGGTIT 142
AEE LA+ + F++P T E+ + DA+ +G GG I+
Sbjct: 137 AEE-LAEEEGLTFVPPFDDP-----DVIAGQGTIALEILEQLPDLPDAVFVPVGGGGLIS 190
Query: 143 GAGKFLKEKNPNIKLYGIEPTESPVL-----SGGKP----GPHKI-QGIGAGFVPGVLEV 192
G LK +P IK+ G+EP +P + +G I G+ PG L
Sbjct: 191 GIATALKALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVK-RPGDLTF 249
Query: 193 NII----DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV 248
I+ D++V V DE + L + + +G A AA+ K GK +VV
Sbjct: 250 EILRELVDDIVLVDEDEICAAMRDLFERTKIIAE-PAGALALAALLAGKIEPLQGKTVVV 308
Query: 249 I 249
I
Sbjct: 309 I 309
>gnl|CDD|107205 cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino
acid degradation is the removal of nitrogen. Although
the nitrogen atoms of most amino acids are transferred
to alpha-ketoglutarate before removal, the alpha-amino
group of threonine can be directly converted into NH4+.
The direct deamination is catalyzed by threonine
dehydratase, in which pyridoxal phosphate (PLP) is the
prosthetic group. Threonine dehydratase is widely
distributed in all three major phylogenetic divisions.
Length = 304
Score = 75.2 bits (186), Expect = 1e-15
Identities = 73/274 (26%), Positives = 111/274 (40%), Gaps = 53/274 (19%)
Query: 3 RIGYSMIS----DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL 58
R Y+ + + AKG++ ++GN G+A+ A I MP +
Sbjct: 50 RGAYNKLLSLSEEERAKGVVAA--------SAGNHAQGVAYAAKLLGIPATIVMPETAPA 101
Query: 59 ERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 118
+ RA+GAE+VL A KA E LA+ + F++P
Sbjct: 102 AKVDATRAYGAEVVLYGE--DFDEAEAKARE-LAEEEGLTFIHPFDDP------------ 146
Query: 119 ELWKGSG----------GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVL 168
++ G G +DA+ +G GG I G +K +PN K+ G+EP +P +
Sbjct: 147 DVIAGQGTIGLEILEQVPDLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGAPAM 206
Query: 169 S----GGKPGPHKIQGI----GAGFVPGVLEVNII----DEVVQVSSDEAIETAKLLALK 216
+ GKP A PG L II D+VV VS DE LL +
Sbjct: 207 AQSLAAGKPVTLPEVDTIADGLAVKRPGELTFEIIRKLVDDVVTVSEDEIAAAMLLLFER 266
Query: 217 EGLFV-GISSGGAAAAAIEIAKRPENAGKLIVVI 249
E L +G A AA+ + + + GK +VV+
Sbjct: 267 EKLVAEP--AGALALAALL-SGKLDLKGKKVVVV 297
>gnl|CDD|130197 TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, medium form. A
form of threonine dehydratase with two copies of the
C-terminal domain pfam00585 is described by TIGR01124.
This model describes a phylogenetically distinct form
with a single copy of pfam00585. This form branches with
the catabolic threonine dehydratase of E. coli; many
members are designated as catabolic for this reason.
However, the catabolic form lacks any pfam00585 domain.
Many members of this model are found in species with
other Ile biosynthetic enzymes [Amino acid biosynthesis,
Pyruvate family].
Length = 380
Score = 64.0 bits (156), Expect = 1e-11
Identities = 61/241 (25%), Positives = 98/241 (40%), Gaps = 34/241 (14%)
Query: 29 TSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAV---- 84
++GN G+A+ A + +I MP S + +++GAE++L G
Sbjct: 55 SAGNHAQGVAYAAKKFGIKAVIVMPESAPPSKVKATKSYGAEVIL-------HGDDYDEA 107
Query: 85 QKAEEILAKTPNAYMLQQFENP----ANPKIHYETTGPELWKGSGGRIDALVSGIGTGGT 140
LA+ + F++ I E +D ++ +G GG
Sbjct: 108 YAFATSLAEEEGRVFVHPFDDEFVMAGQGTIGLEIME------DIPDVDTVIVPVGGGGL 161
Query: 141 ITGAGKFLKEKNPNIKLYGIEPTESPV----LSGGKPGPHK-IQGIGAGFV---PGVLEV 192
I+G K+ NPN+K+ G+E +P L GK + ++ I G PG L
Sbjct: 162 ISGVASAAKQINPNVKVIGVEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTF 221
Query: 193 NII----DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV 248
NII D+VV V +E I A L L+ + +G A AA+ K K+ VV
Sbjct: 222 NIIKEYVDDVVTV-DEEEIANAIYLLLERHKILAEGAGAAGVAALLEQKVDVKGKKIAVV 280
Query: 249 I 249
+
Sbjct: 281 L 281
>gnl|CDD|130194 TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, biosynthetic, long
form. This model describes a form of threonine
ammonia-lyase, a pyridoxal-phosphate dependent enzyme,
with two copies of the threonine dehydratase C-terminal
domain (pfam00585). Members with known function
participate in isoleucine biosynthesis and are inhibited
by isoleucine. Alternate name: threonine deaminase,
threonine dehydratase. Forms scoring between the trusted
and noise cutoff tend to branch with this subgroup of
threonine ammonia-lyase phylogenetically but have only a
single copy of the C-terminal domain [Amino acid
biosynthesis, Pyruvate family].
Length = 499
Score = 60.5 bits (147), Expect = 2e-10
Identities = 61/229 (26%), Positives = 98/229 (42%), Gaps = 48/229 (20%)
Query: 3 RIGYSMIS----DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL 58
R Y+ ++ + +A+G+I ++GN G+AF AA + +I MP +
Sbjct: 50 RGAYNKMAQLSPEQKARGVIAA--------SAGNHAQGVAFSAARLGLKALIVMPETTPD 101
Query: 59 ERRIILRAFGAELVLT----DPAKGMKGAVQKAEEILAKTPNAYMLQQFENP---ANPKI 111
+ +R FG E+VL D AK KA E L++ + F++P A
Sbjct: 102 IKVDAVRGFGGEVVLHGANFDDAKA------KAIE-LSQEKGLTFIHPFDDPLVIAGQG- 153
Query: 112 HYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV---- 167
T E+ + +DA+ +G GG G +K+ P IK+ G+EPT+S
Sbjct: 154 ---TLALEILRQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQA 210
Query: 168 LSGGKPGPHKIQGIGAGFVPGV-----------LEVNIIDEVVQVSSDE 205
L G+P G+ F GV L +D++V V +DE
Sbjct: 211 LDAGEPVDLDQVGL---FADGVAVKRVGDETFRLCQQYLDDIVTVDTDE 256
>gnl|CDD|107206 cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate
(PLP) dependent enzyme that catalyses the last reaction
in the synthesis of threonine from aspartate. It
proceeds by converting O-phospho-L-homoserine (OPH) into
threonine and inorganic phosphate. In plants, OPH is an
intermediate between the methionine and
threonine/isoleucine pathways. Thus threonine synthase
competes for OPH with cystathionine-gamma-synthase, the
first enzyme in the methionine pathway. These enzymes
are in general dimers. Members of this CD, Thr-synth_1,
are widely distributed in bacteria, archaea and higher
plants.
Length = 324
Score = 57.6 bits (140), Expect = 1e-09
Identities = 62/257 (24%), Positives = 105/257 (40%), Gaps = 36/257 (14%)
Query: 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80
G + ++GNT LA AA + ++ +PA +L + A+GA ++ +G
Sbjct: 69 GVKAVACASTGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAYGATVL---AVEGN 125
Query: 81 KGAVQKAEEILAKTPNAYMLQQFENPANP-KIH-YETTGPELWKGSGGRI-DALVSGIGT 137
+ LA+ Y+ N NP ++ +T E+ + G + D +V +G
Sbjct: 126 FDDALRLVRELAEENWIYLS----NSLNPYRLEGQKTIAFEIAEQLGWEVPDYVVVPVGN 181
Query: 138 GGTITGAGKFLKE--------KNPNIKLYGIEPTE-SPVLSGGKPG---------PHKI- 178
GG IT K KE + P ++ G++ +P++ K G P I
Sbjct: 182 GGNITAIWKGFKELKELGLIDRLP--RMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIA 239
Query: 179 QGIGAGF-VPGVLEVNIIDE----VVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAI 233
I G G + + E V VS +E +E KLLA EG+FV +S + A
Sbjct: 240 TAIRIGNPASGPKALRAVRESGGTAVAVSDEEILEAQKLLARTEGIFVEPASAASLAGLK 299
Query: 234 EIAKRPENAGKLIVVIF 250
++ + VV+
Sbjct: 300 KLREEGIIDKGERVVVV 316
>gnl|CDD|180709 PRK06815, PRK06815, hypothetical protein; Provisional.
Length = 317
Score = 55.5 bits (134), Expect = 6e-09
Identities = 67/246 (27%), Positives = 109/246 (44%), Gaps = 38/246 (15%)
Query: 26 IEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL-VLTDPAKGMKGAV 84
I +SGN G G+A A + + P S + +RA GAE+ + A + A
Sbjct: 72 ITASSGNHGQGVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGGDALNAELAA 131
Query: 85 QKAEEILAKTPNAYMLQQFENPAN-PKI--HYETTGPELWKGSGGRIDALVSGIGTGGTI 141
++A E K + +P N P++ T G EL + +DA+ +G GG I
Sbjct: 132 RRAAEQQGKV--------YISPYNDPQVIAGQGTIGMELVE-QQPDLDAVFVAVGGGGLI 182
Query: 142 TGAGKFLKEKNPNIKLYG------------------IEPTESPVLSGGKPGPHKIQGIGA 183
+G +LK +P ++ G +E E P LS G G G+
Sbjct: 183 SGIATYLKTLSPKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAG-----GVEP 237
Query: 184 GFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAG 243
G + L +ID+ V VS +E E +L+A + + ++G A AAA+++A R + G
Sbjct: 238 GAITFPLCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIEGAAGVALAAALKLAPRYQ--G 295
Query: 244 KLIVVI 249
K + V+
Sbjct: 296 KKVAVV 301
>gnl|CDD|237111 PRK12483, PRK12483, threonine dehydratase; Reviewed.
Length = 521
Score = 50.2 bits (120), Expect = 4e-07
Identities = 58/209 (27%), Positives = 91/209 (43%), Gaps = 28/209 (13%)
Query: 11 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70
+ A+G+IT ++GN G+A AA + +I MP + + +RA G E
Sbjct: 82 EQLARGVITA--------SAGNHAQGVALAAARLGVKAVIVMPRTTPQLKVDGVRAHGGE 133
Query: 71 LVLTDPA--KGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRI 128
+VL + + A++ AEE + F++P + T E+ + G +
Sbjct: 134 VVLHGESFPDALAHALKLAEE-----EGLTFVPPFDDP-DVIAGQGTVAMEILRQHPGPL 187
Query: 129 DALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGG-KPGPHKIQGIGAGFVP 187
DA+ +G GG I G ++K P IK+ G+EP +S L G + G F
Sbjct: 188 DAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFAD 247
Query: 188 GVLEVNI-----------IDEVVQVSSDE 205
GV I +DEVV VS+DE
Sbjct: 248 GVAVAQIGEHTFELCRHYVDEVVTVSTDE 276
>gnl|CDD|236182 PRK08198, PRK08198, threonine dehydratase; Provisional.
Length = 404
Score = 49.8 bits (120), Expect = 6e-07
Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 29/142 (20%)
Query: 128 IDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV----LSGGKP----GPHKI- 178
+D +V IG GG I+G +K P +++ G++ +P L+ G+P I
Sbjct: 171 VDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMPESLAAGRPVELESVDTIA 230
Query: 179 QGIGAGFVPGVLEVNII----DEVVQVSSDE---AI----ETAKLLALKEGLFVGISSGG 227
GI PG L II D+VV VS +E AI E AKL+ EG +G
Sbjct: 231 DGIAVK-RPGDLTFEIIRELVDDVVTVSDEEIARAILLLLERAKLVV--EG------AGA 281
Query: 228 AAAAAIEIAKRPENAGKLIVVI 249
+ AA+ K K++ V+
Sbjct: 282 VSVAALLSGKLDVKGKKVVAVL 303
>gnl|CDD|180550 PRK06382, PRK06382, threonine dehydratase; Provisional.
Length = 406
Score = 48.7 bits (116), Expect = 1e-06
Identities = 67/258 (25%), Positives = 112/258 (43%), Gaps = 29/258 (11%)
Query: 6 YSMISDAEAK-GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIIL 64
+S +S+ E + G+IT ++GN G+A+ A+ I MP ++ +
Sbjct: 64 FSKLSEDELRNGVITA--------SAGNHAQGVAYAASINGIDAKIVMPEYTIPQKVNAV 115
Query: 65 RAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGS 124
A+GA ++LT + A + A++I A N ++ F + T G E+ +
Sbjct: 116 EAYGAHVILT--GRDYDEAHRYADKI-AMDENRTFIEAFNDRWVISGQ-GTIGLEIMEDL 171
Query: 125 GGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV----LSGGKPGPHK--- 177
+D ++ +G GG I+G K NPN+K+ GIE S L GK H
Sbjct: 172 PD-LDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSMKASLREGKIVAHTSGV 230
Query: 178 --IQGIGAGFVPGVLEVNI----IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAA 231
GI + PG L +I +D++V V ++E++ A + V SG A
Sbjct: 231 SICDGISVKY-PGDLTFDIAKNYVDDIVTV-TEESVSKAIYKLFEREKIVAEPSGAVGLA 288
Query: 232 AIEIAKRPENAGKLIVVI 249
AI K K+ +V+
Sbjct: 289 AIMEGKVDVKGKKVAIVV 306
>gnl|CDD|223572 COG0498, ThrC, Threonine synthase [Amino acid transport and
metabolism].
Length = 411
Score = 46.9 bits (112), Expect = 4e-06
Identities = 56/269 (20%), Positives = 99/269 (36%), Gaps = 66/269 (24%)
Query: 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKG 79
G ++ +SGNTG A AA ++ + P +S + + GA ++ G
Sbjct: 125 GAKTILCASSGNTGASAAAYAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVI---AVDG 181
Query: 80 MKGAVQK-AEEILAKTPNAYMLQQFENPANP------KIHYETTGPELWKGSGGRI-DAL 131
Q+ +E + + N NP K + E+ + G + D +
Sbjct: 182 NFDDAQELVKEAANREGLLSAV----NSINPYRLEGQKTYAF----EIAEQLGWKAPDHV 233
Query: 132 VSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGA-GFVPGVL 190
V +G GG + K KE P K+ ++P + G+ A GF PGV
Sbjct: 234 VVPVGNGGNLLAIYKGFKEGLPIGKI-----DKAP----------NMNGVQAEGFSPGVY 278
Query: 191 EVNIIDEVVQ------------------------------VSSDEAIETAKLLALKEGLF 220
E + VS +E +E KLLA +EG+
Sbjct: 279 AWKEGRETPETIAPAMDIGNPSNWERALFALRESGGLAVAVSDEEILEAIKLLAEREGIL 338
Query: 221 VGISSGGAAAAAIEIAKRPENAGKLIVVI 249
+ S A AA +++ ++ + + +V++
Sbjct: 339 IEPHSAVAVAALLKLREKIIDPDETVVLV 367
>gnl|CDD|233712 TIGR02079, THD1, threonine dehydratase. This model represents
threonine dehydratase, the first step in the pathway
converting threonine into isoleucine. At least two other
clades of biosynthetic threonine dehydratases have been
charcterized (TIGR01124 and TIGR01127). Those sequences
described by this model are exclusively found in species
containg the rest of the isoleucine pathway and which
are generally lacking in members of the those other two
clades of threonine dehydratases. Members of this clade
are also often gene clustered with other elements of the
isoleucine pathway [Amino acid biosynthesis, Pyruvate
family].
Length = 409
Score = 46.3 bits (110), Expect = 9e-06
Identities = 35/171 (20%), Positives = 66/171 (38%), Gaps = 13/171 (7%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R Y+ + L ++ ++GN G A+ + MPA+ ++
Sbjct: 49 RGAYNFLKQLSDAQL----AKGVVCASAGNHAQGFAYACRHLGVHGTVFMPATTPKQKID 104
Query: 63 ILRAFGAE---LVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYE-TTGP 118
++ FG E ++L A E + + F++P I + T
Sbjct: 105 RVKIFGGEFIEIILV--GDTFDQCAAAAREHVEDH-GGTFIPPFDDPR--IIEGQGTVAA 159
Query: 119 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS 169
E+ + D +V +G GG I+G +L +P K+ G+EP +P +
Sbjct: 160 EILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMK 210
>gnl|CDD|181457 PRK08526, PRK08526, threonine dehydratase; Provisional.
Length = 403
Score = 44.3 bits (105), Expect = 3e-05
Identities = 66/246 (26%), Positives = 99/246 (40%), Gaps = 38/246 (15%)
Query: 26 IEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQ 85
I ++GN G+A A + +I MP + L + +A GAE++L A
Sbjct: 72 IAASAGNHAQGVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILK--GDNYDEAYA 129
Query: 86 KAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSG----------GRIDALVSGI 135
A E AK N + FE+ E+ G G +D +V +
Sbjct: 130 FALEY-AKENNLTFIHPFEDE------------EVMAGQGTIALEMLDEISDLDMVVVPV 176
Query: 136 GTGGTITGAGKFLKEKNPNIKLYGIEPTESPVL--SGGKPGPHKIQG---IGAGF-VPGV 189
G GG I+G K+ NPNIK+ G+ +P + S + I G V
Sbjct: 177 GGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKIINSKSVRTIADGIAVRDA 236
Query: 190 LEVNI------IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAG 243
+N+ +D+ VQV DE I A L L++ V +G A+ AA+ K G
Sbjct: 237 SPINLAIILECVDDFVQV-DDEEIANAILFLLEKQKIVVEGAGAASVAALLHQKIDLKKG 295
Query: 244 KLIVVI 249
K I V+
Sbjct: 296 KKIGVV 301
>gnl|CDD|236417 PRK09224, PRK09224, threonine dehydratase; Reviewed.
Length = 504
Score = 43.2 bits (103), Expect = 9e-05
Identities = 59/230 (25%), Positives = 95/230 (41%), Gaps = 56/230 (24%)
Query: 6 YSMIS----DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
Y+ ++ + A+G+IT ++GN G+A AA + +I MP + +
Sbjct: 56 YNKMAQLTEEQLARGVITA--------SAGNHAQGVALSAARLGIKAVIVMPVTTPDIKV 107
Query: 62 IILRAFGAELVLT----DPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYE-TT 116
+RAFG E+VL D A A E LA+ + F++P I + T
Sbjct: 108 DAVRAFGGEVVLHGDSFDEAY------AHAIE-LAEEEGLTFIHPFDDPD--VIAGQGTI 158
Query: 117 GPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPH 176
E+ + +DA+ +G GG I G ++K+ P IK+ G+EP +S L
Sbjct: 159 AMEILQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACLK------- 211
Query: 177 KIQGIGAG----------FVPGV-----------LEVNIIDEVVQVSSDE 205
+ AG F GV L +D+V+ V +DE
Sbjct: 212 --AALEAGERVDLPQVGLFADGVAVKRIGEETFRLCQEYVDDVITVDTDE 259
>gnl|CDD|107207 cd06446, Trp-synth_B, Tryptophan synthase-beta: Trptophan synthase
is a bifunctional enzyme that catalyses the last two
steps in the biosynthesis of L-tryptophan via its alpha
and beta reactions. In the alpha reaction, indole
3-glycerol phosphate is cleaved reversibly to
glyceraldehyde 3-phosphate and indole at the active site
of the alpha subunit. In the beta reaction, indole
undergoes a PLP-dependent reaction with L-serine to form
L-tryptophan at the active site of the beta subunit.
Members of this CD, Trp-synth_B, are found in all three
major phylogenetic divisions.
Length = 365
Score = 42.1 bits (100), Expect = 2e-04
Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 37/153 (24%)
Query: 129 DALVSGIGTGGTITG-AGKFLKEKNPNIKLYGIEPTESPV--------LSGGKPG----- 174
D +++ +G G G F+ +K+ +KL G+E + L GG G
Sbjct: 204 DVVIACVGGGSNAAGLFYPFINDKD--VKLIGVEAGGCGLETGGHAAYLFGGTAGVLHGL 261
Query: 175 --------PHKIQG---IGAGFV-PGV-------LEVNIIDEVVQVSSDEAIETAKLLAL 215
+I I AG PGV + + E V V+ +EA+E KLLA
Sbjct: 262 KMYTLQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDSGRV-EYVAVTDEEALEAFKLLAR 320
Query: 216 KEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV 248
EG+ + S A A AI++AK+ K+IVV
Sbjct: 321 TEGIIPALESSHAIAYAIKLAKKL-GKEKVIVV 352
>gnl|CDD|181319 PRK08246, PRK08246, threonine dehydratase; Provisional.
Length = 310
Score = 41.9 bits (99), Expect = 2e-04
Identities = 61/216 (28%), Positives = 92/216 (42%), Gaps = 26/216 (12%)
Query: 31 GNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP--AKGMKGAVQKAE 88
GN G+ +A+ AAA + +P + + LRA GAE+V+ A ++ A A
Sbjct: 77 GNAGLAVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGAEYADALEAAQAFAA 136
Query: 89 EILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFL 148
E A +AY Q E A T G E + +D ++ +G GG I G +
Sbjct: 137 ETGALLCHAY--DQPEVLAGAG----TLGLE-IEEQAPGVDTVLVAVGGGGLIAGIAAWF 189
Query: 149 KEKNPNIKLYGIEPTESPVL----SGGKPGPHKIQGIGA--------GFVPGVLEVNIID 196
+ ++ +EP +P L + G+P + GI A G + L +
Sbjct: 190 E---GRARVVAVEPEGAPTLHAALAAGEPVDVPVSGIAADSLGARRVGEIAFALARAHVV 246
Query: 197 EVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAA 232
V V SDEAI A+ AL E L + + G A A A
Sbjct: 247 TSVLV-SDEAIIAAR-RALWEELRLAVEPGAATALA 280
>gnl|CDD|235699 PRK06110, PRK06110, hypothetical protein; Provisional.
Length = 322
Score = 39.6 bits (93), Expect = 0.001
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 20 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72
P +I T GN G +AF A I +P S+E+ +RA GAEL+
Sbjct: 68 PRVRGVISATRGNHGQSVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAELI 120
Score = 28.0 bits (63), Expect = 5.6
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 12/61 (19%)
Query: 195 IDEVVQVSSDEAIETAKLL-----ALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVI 249
D +V+V+ DE + + EG GAAA A + +R AGK + ++
Sbjct: 249 ADRIVRVTDDEVAAAMRAYFTDTHNVAEG-------AGAAALAAALQERERLAGKRVGLV 301
Query: 250 F 250
Sbjct: 302 L 302
>gnl|CDD|236318 PRK08639, PRK08639, threonine dehydratase; Validated.
Length = 420
Score = 39.0 bits (92), Expect = 0.002
Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 33/162 (20%)
Query: 31 GNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA---ELVLT----DPAKGMKGA 83
GN G+A+ +I MP + ++ +R FG E+VL D + A
Sbjct: 82 GNHAQGVAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGDTFDDS--AAAA 139
Query: 84 VQKAEEILAKTPNAYMLQQFENP------ANPKIHYETTGPELWK--GSGGRIDALVSGI 135
+ AEE A + F++P T E+ + G D + +
Sbjct: 140 QEYAEET-----GATFIPPFDDPDVIAGQG-------TVAVEILEQLEKEGSPDYVFVPV 187
Query: 136 GTGGTITGAGKFLKEKNPNIKLYGIEPTESP----VLSGGKP 173
G GG I+G +LKE++P K+ G+EP + L GKP
Sbjct: 188 GGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAALEAGKP 229
>gnl|CDD|235918 PRK07048, PRK07048, serine/threonine dehydratase; Validated.
Length = 321
Score = 37.7 bits (88), Expect = 0.005
Identities = 57/246 (23%), Positives = 98/246 (39%), Gaps = 45/246 (18%)
Query: 29 TSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAE 88
+SGN +A A I MP + R +G E+V D + E
Sbjct: 79 SSGNHAQAIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDRYT------EDRE 132
Query: 89 EI---LAKTPNAYMLQQFENPANPKIHY----ETTGPELWKGSGGRIDALVSGIGTGGTI 141
EI LA+ ++ +++P H T EL++ G +DAL +G GG +
Sbjct: 133 EIGRRLAEERGLTLIPPYDHP-----HVIAGQGTAAKELFEEVG-PLDALFVCLGGGGLL 186
Query: 142 TGAGKFLKEKNPNIKLYGIEPT-----------------ESP-VLSGGKPGPHKIQGIGA 183
+G + +P K+YG+EP ++P ++ G H +G
Sbjct: 187 SGCALAARALSPGCKVYGVEPEAGNDGQQSFRSGEIVHIDTPRTIADGAQTQH----LGN 242
Query: 184 GFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAG 243
P + ++D++V VS E ++ + A + + V + AAAA+ + G
Sbjct: 243 YTFPIIRR--LVDDIVTVSDAELVDAMRFFAERMKIVVEPTGCLGAAAALR--GKVPLKG 298
Query: 244 KLIVVI 249
K + VI
Sbjct: 299 KRVGVI 304
>gnl|CDD|234245 TIGR03528, 2_3_DAP_am_ly, diaminopropionate ammonia-lyase. Members
of this protein family are the homodimeric, pyridoxal
phosphate enzyme diaminopropionate ammonia-lyase, which
adds water to remove two amino groups, leaving pyruvate.
Length = 396
Score = 37.8 bits (88), Expect = 0.005
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75
G+ + T GN G G+A+ A + ++ MP + ER +RA GAE +TD
Sbjct: 112 GDITFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQERLENIRAEGAECTITD 166
>gnl|CDD|178165 PLN02550, PLN02550, threonine dehydratase.
Length = 591
Score = 37.2 bits (86), Expect = 0.007
Identities = 53/218 (24%), Positives = 91/218 (41%), Gaps = 28/218 (12%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R Y+M++ + L + +I ++GN G+A A +I MP + +
Sbjct: 142 RGAYNMMAKLPKEQL----DKGVICSSAGNHAQGVALSAQRLGCDAVIAMPVTTPEIKWQ 197
Query: 63 ILRAFGAELVLT----DPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 118
+ GA +VL D A+ A Q+A E + F++P + T G
Sbjct: 198 SVERLGATVVLVGDSYDEAQAY--AKQRALE-----EGRTFIPPFDHP-DVIAGQGTVGM 249
Query: 119 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS-GGKPGPHK 177
E+ + G + A+ +G GG I G ++K P +K+ G+EP+++ ++ G
Sbjct: 250 EIVRQHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAMALSLHHGERV 309
Query: 178 IQGIGAGFVPGV-----------LEVNIIDEVVQVSSD 204
+ GF GV L ++D VV VS D
Sbjct: 310 MLDQVGGFADGVAVKEVGEETFRLCRELVDGVVLVSRD 347
>gnl|CDD|235539 PRK05638, PRK05638, threonine synthase; Validated.
Length = 442
Score = 37.1 bits (86), Expect = 0.008
Identities = 53/236 (22%), Positives = 94/236 (39%), Gaps = 30/236 (12%)
Query: 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80
+ I + GN +A +A + +P + + I + AFGA+++ + +
Sbjct: 111 AANGFIVASDGNAAASVAAYSARAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRY--GESV 168
Query: 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYE---TTGPELWKGSGGRIDALVSGIGT 137
A++ AEE LA+ Y + P I E T ELW+ ++ G+
Sbjct: 169 DEAIEYAEE-LARLNGLYNV----TPEYNIIGLEGQKTIAFELWEEINP--THVIVPTGS 221
Query: 138 GGTITGAGKFLKEKNPN------IKLYGIEPTE--SPVLS---GGKPGPHKIQGIGAGFV 186
G + K KE KL ++ TE +P+ S G K ++ + +G
Sbjct: 222 GSYLYSIYKGFKELLEIGVIEEIPKLIAVQ-TERCNPIASEILGNKTKCNETKALGLYVK 280
Query: 187 PGVLE---VNIIDE---VVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIA 236
V++ I E V ++E I + L KEG+F +SS A +++
Sbjct: 281 NPVMKEYVSEAIKESGGTAVVVNEEEIMAGEKLLAKEGIFAELSSAVVMPALLKLG 336
>gnl|CDD|236186 PRK08206, PRK08206, diaminopropionate ammonia-lyase; Provisional.
Length = 399
Score = 36.8 bits (86), Expect = 0.010
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 4 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQY--RLIITMPASMSLERR 61
+ + ++ E + + G+ T GN G G+A AA+Q + +I MP S ER
Sbjct: 100 LSFEELTSGEVREKL--GDITFATATDGNHGRGVA--WAAQQLGQKAVIYMPKGSSEERV 155
Query: 62 IILRAFGAELVLTD 75
+RA GAE ++TD
Sbjct: 156 DAIRALGAECIITD 169
>gnl|CDD|211710 TIGR02035, D_Ser_am_lyase, D-serine ammonia-lyase. This family
consists of D-serine ammonia-lyase (EC 4.3.1.18), a
pyridoxal-phosphate enzyme that converts D-serine to
pyruvate and NH3. This enzyme is also called D-serine
dehydratase and D-serine deaminase and was previously
designated EC 4.2.1.14. It is homologous to an enzyme
that acts on threonine and may itself act weakly on
threonine [Energy metabolism, Amino acids and amines].
Length = 431
Score = 36.0 bits (83), Expect = 0.019
Identities = 60/266 (22%), Positives = 105/266 (39%), Gaps = 40/266 (15%)
Query: 6 YSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR 65
YS++++ E K + S+ + T GN G+ + ++AA +++ + M A ++ LR
Sbjct: 138 YSILAEPEFKQFFSR-YSIAVGST-GNLGLSIGIISAALGFQVTVHMSADARQWKKDKLR 195
Query: 66 AFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK--- 122
+ G +V + G+ AV++ + PN Y + EN + Y L
Sbjct: 196 SHGVTVVEYESDYGV--AVEEGRKAAQSDPNCYFIDD-ENSRTLFLGYAVAASRLKAQFD 252
Query: 123 GSGGRIDA-------LVSGIG--TGGTITGAGKFLKEKNPNIKLYGIEPTESP-VLSGGK 172
G +DA L G+G GG G + ++ + EPT SP +L G
Sbjct: 253 QQGIIVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGD---HVHCFFAEPTHSPCMLLGVY 309
Query: 173 PGPHK---IQGIG---------------AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLA 214
G H+ +Q IG +GFV +E ++D V + LA
Sbjct: 310 TGLHEQISVQDIGIDNLTAADGLAVGRPSGFVGRAME-RLLDGFYTVDDQTLYDLLGWLA 368
Query: 215 LKEGLFVGISSGGAAAAAIEIAKRPE 240
EG+ + S+ A + +
Sbjct: 369 QSEGIRLEPSALAGMAGPVRVCASEV 394
>gnl|CDD|235994 PRK07334, PRK07334, threonine dehydratase; Provisional.
Length = 403
Score = 35.6 bits (83), Expect = 0.022
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 11/116 (9%)
Query: 128 IDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS---GGKPGPHKIQGIGAG 184
+D LV IG GG I+G K P+I++ G++ P + G P I G
Sbjct: 172 LDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTELYPSMYAAIKGVALPCGGSTIAEG 231
Query: 185 F---VPGVLEVNII----DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAI 233
PG L + I+ D+++ V S+ IE A L L+ V +G A AA+
Sbjct: 232 IAVKQPGQLTLEIVRRLVDDILLV-SEADIEQAVSLLLEIEKTVVEGAGAAGLAAL 286
>gnl|CDD|236317 PRK08638, PRK08638, threonine dehydratase; Validated.
Length = 333
Score = 35.1 bits (81), Expect = 0.026
Identities = 63/250 (25%), Positives = 96/250 (38%), Gaps = 39/250 (15%)
Query: 7 SMISDAE-AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR 65
S ++DAE KG++ ++GN G+A A + MP +
Sbjct: 67 SSLTDAEKRKGVVAC--------SAGNHAQGVALSCALLGIDGKVVMPKGAPKSKVAATC 118
Query: 66 AFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENP----ANPKIHYETTGPELW 121
+GAE+VL + K EEI + + +++P I E +LW
Sbjct: 119 GYGAEVVLH--GDNFNDTIAKVEEI-VEEEGRTFIPPYDDPKVIAGQGTIGLEIL-EDLW 174
Query: 122 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEP------TESPVLSGGKPGP 175
+D ++ IG GG I G LK NP I + G++ S G+
Sbjct: 175 D-----VDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVHGMAAS--FYAGEITT 227
Query: 176 HKIQGIGAG----FVPGVLEVNI----IDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 227
H+ G A PG L I +D++V VS DE I A ++ V +G
Sbjct: 228 HRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDE-IRNAMKDLIQRNKVVTEGAGA 286
Query: 228 AAAAAIEIAK 237
A AA+ K
Sbjct: 287 LATAALLSGK 296
>gnl|CDD|235842 PRK06608, PRK06608, threonine dehydratase; Provisional.
Length = 338
Score = 35.1 bits (81), Expect = 0.027
Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 8/135 (5%)
Query: 29 TSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAE 88
++GN G +A+ + + I +P + S ++ +G E++LT+ + + ++ E
Sbjct: 79 STGNHGQAVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNTRQEAEEKAKEDE 138
Query: 89 EILAKTPNAYMLQQFENPANPKIHYE-TTGPELWKGSGGRIDALVSGIGTGGTITGAGKF 147
E Y + ++ + I T E + G DA+ + G GG I+G
Sbjct: 139 E-----QGFYYIHPSDSDS--TIAGAGTLCYEALQQLGFSPDAIFASCGGGGLISGTYLA 191
Query: 148 LKEKNPNIKLYGIEP 162
+ +P L G EP
Sbjct: 192 KELISPTSLLIGSEP 206
>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase
(QOR). NAD(P)(H)-dependent oxidoreductases are the
major enzymes in the interconversion of alcohols and
aldehydes, or ketones. The medium chain alcohol
dehydrogenase family (MDR) have a NAD(P)(H)-binding
domain in a Rossmann fold of a beta-alpha form. The
N-terminal region typically has an all-beta catalytic
domain. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit.
Length = 320
Score = 34.5 bits (80), Expect = 0.039
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 18 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76
+ PG+++LI G + +GLA + AK +T + S ER +L+ GA+ V+ D
Sbjct: 140 LQPGDTLLIR--GGTSSVGLAALKLAKALGATVT-ATTRSPERAALLKELGADEVVIDD 195
>gnl|CDD|130808 TIGR01747, diampropi_NH3ly, diaminopropionate ammonia-lyase family.
This small subfamily includes diaminopropionate
ammonia-lyase from Salmonella typhimurium and a small
number of close homologs, about 50 % identical in
sequence. The enzyme is a pyridoxal phosphate-binding
homodimer homologous to threonine dehydratase (threonine
deaminase) [Energy metabolism, Other].
Length = 376
Score = 34.5 bits (79), Expect = 0.053
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75
G++ T GN G G+A+ A + ++ MP + ER + GAE +TD
Sbjct: 93 GQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITD 147
>gnl|CDD|232897 TIGR00263, trpB, tryptophan synthase, beta subunit. Tryptophan
synthase catalyzes the last step in the biosynthesis of
tryptophan. the beta chain contains the functional
domain for or the synthesis of tryptophan from indole
and serine. The enzyme requires pyridoxal-phosphate as a
cofactor. The pyridoxal-P attachment site is contained
within the conserved region
[LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P
attachment site] which is present between residues
90-100 of the model [Amino acid biosynthesis, Aromatic
amino acid family].
Length = 385
Score = 34.3 bits (79), Expect = 0.064
Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 38/153 (24%)
Query: 129 DALVSGIGTGGTITGA-GKFLKEKNPNIKLYGIE--------PTESPVLSGGKPGPHKIQ 179
DA+++ +G G G F+ +P+++L G+E + L+ G PG +
Sbjct: 220 DAVIACVGGGSNAIGIFYAFID--DPSVQLIGVEAGGLGIDTDKHAATLAKGSPG--VLH 275
Query: 180 G------------------IGAGF-VPGV--LEVNIID----EVVQVSSDEAIETAKLLA 214
G + AG PGV + + ++ DEA+E KLL+
Sbjct: 276 GMKTYLLQDEDGQILEAHSVSAGLDYPGVGPEHAYLHETGRATYEAITDDEALEAFKLLS 335
Query: 215 LKEGLFVGISSGGAAAAAIEIAKRPENAGKLIV 247
EG+ + S A A +IA ++V
Sbjct: 336 RNEGIIPALESSHALAHLEKIAPTLPKDQIVVV 368
>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
The medium chain reductase/dehydrogenases
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH) , quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. ADH-like proteins
typically form dimers (typically higher plants, mammals)
or tetramers (yeast, bacteria), and generally have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site and a structural zinc in a lobe of
the catalytic domain. The active site zinc is
coordinated by a histidine, two cysteines, and a water
molecule. The second zinc seems to play a structural
role, affects subunit interactions, and is typically
coordinated by 4 cysteines. Other MDR members have only
a catalytic zinc, and some contain no coordinated zinc.
Length = 271
Score = 33.4 bits (77), Expect = 0.088
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 15 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQY--RLIITMPASMSLERRIILRAFGAELV 72
G++ PG++VL+ G G+GL AK R+I+T S E+ + + GA+ V
Sbjct: 129 AGVLKPGDTVLVL---GAGGVGLLAAQLAKAAGARVIVT---DRSDEKLELAKELGADHV 182
Query: 73 L 73
+
Sbjct: 183 I 183
>gnl|CDD|237087 PRK12391, PRK12391, tryptophan synthase subunit beta; Reviewed.
Length = 427
Score = 33.2 bits (77), Expect = 0.11
Identities = 34/136 (25%), Positives = 51/136 (37%), Gaps = 33/136 (24%)
Query: 147 FLKEK---NPNIKLYGIEPTESPVLSGG----------KPGP-HKIQGIGAGFVP----- 187
FL +K + + +EP P L+ G P K+ +G FVP
Sbjct: 274 FLGDKLEGKKDTRFIAVEPAACPTLTKGEYAYDFGDTAGLTPLLKMYTLGHDFVPPPIHA 333
Query: 188 ------GV-------LEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIE 234
G+ + +I E E E A L A EG+ S A AAAI+
Sbjct: 334 GGLRYHGMAPLVSLLVHEGLI-EARAYPQTEVFEAAVLFARTEGIVPAPESSHAIAAAID 392
Query: 235 IAKRPENAGKLIVVIF 250
A + + G+ V++F
Sbjct: 393 EALKAKEEGEEKVILF 408
>gnl|CDD|223211 COG0133, TrpB, Tryptophan synthase beta chain [Amino acid transport
and metabolism].
Length = 396
Score = 33.3 bits (77), Expect = 0.11
Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 41/155 (26%)
Query: 129 DALVSGIGTGGTITGA-GKFLKEKNPNIKLYGIEPT----ESP----VLSGGKPG----- 174
DA+V+ +G G G F+ + +++L G+E E+ L+ G+PG
Sbjct: 225 DAVVACVGGGSNAIGIFHPFIDD--ESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGM 282
Query: 175 --------------PHKIQGIGAGF-VPGV------LEVNIIDEVVQVSSDEAIETAKLL 213
H I AG PGV L+ E V ++ +EA+E +LL
Sbjct: 283 KTYLLQDEDGQILESHSIS---AGLDYPGVGPEHAYLKDIGRAEYVSITDEEALEAFQLL 339
Query: 214 ALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV 248
+ EG+ + S A A A+++A + ++IVV
Sbjct: 340 SRLEGIIPALESSHALAYALKLAPK-LPKDEIIVV 373
>gnl|CDD|235830 PRK06558, PRK06558, V-type ATP synthase subunit K; Validated.
Length = 159
Score = 32.3 bits (74), Expect = 0.12
Identities = 18/31 (58%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 218 GLFVGISSGGAAAAAIEI-AKRPENAGKLIV 247
GLF IS G AAA I+I AKRPE K I+
Sbjct: 105 GLFSAISQGKVAAAGIQILAKRPEEFTKGII 135
>gnl|CDD|233403 TIGR01415, trpB_rel, pyridoxal-phosphate dependent TrpB-like
enzyme. This model represents a family of
pyridoxal-phosphate dependent enzyme (pfam00291) closely
related to the beta subunit of tryptophan synthase
(TIGR00263). However, the only case in which a member of
this family replaces a member of TIGR00263 is in
Sulfolobus species which contain two sequences which hit
this model, one of which is proximal to the alpha
subunit. In every other case so far, either the species
appears not to make tryptophan (there is no trp synthase
alpha subunit), or a trp synthase beta subunit matching
TIGR00263 is also found [Unknown function, Enzymes of
unknown specificity].
Length = 419
Score = 32.8 bits (75), Expect = 0.15
Identities = 20/62 (32%), Positives = 29/62 (46%)
Query: 197 EVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGER 256
E +EA E A + A EG+ S A AAAI+ A++ G+ V++F G
Sbjct: 346 EARAYDQEEAFEAAVIFAKTEGIVPAPESAHAIAAAIDEARKCRETGEEKVILFNLSGHG 405
Query: 257 YL 258
L
Sbjct: 406 LL 407
>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent
oxidoreductases [Energy production and conversion /
General function prediction only].
Length = 326
Score = 32.7 bits (75), Expect = 0.16
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72
+ + PGE+VL+ +G G +A A ++ S E+ +L+ GA+ V
Sbjct: 135 FDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAV---VSSSEKLELLKELGADHV 191
Query: 73 L 73
+
Sbjct: 192 I 192
>gnl|CDD|233338 TIGR01275, ACC_deam_rel, pyridoxal phosphate-dependent enzymes,
D-cysteine desulfhydrase family. This model represents
a family of pyridoxal phosphate-dependent enzymes
closely related to (and often designated as putative
examples of) 1-aminocyclopropane-1-carboxylate
deaminase. It appears that members of this family
include both D-cysteine desulfhydrase (EC 4.4.1.15) and
1-aminocyclopropane-1-carboxylate deaminase (EC
3.5.99.7).
Length = 318
Score = 32.5 bits (74), Expect = 0.19
Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 13/132 (9%)
Query: 127 RIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPH---KIQGIGA 183
+ D++V G+GGTI G L P+++L G+ + +Q I
Sbjct: 176 KFDSIVVASGSGGTIAGLSLGLSHLMPDVELVGVTVSR----FVADQTDKFVNLVQAIAE 231
Query: 184 GF-VPGVLEVNIIDEV----VQVSSDEAIETAKLLALKEGLFVG-ISSGGAAAAAIEIAK 237
G + + + D+ V + E +E K +A EG+ + + +G A I+ +
Sbjct: 232 GLELTVSAVIPLWDDYFGPGYGVPTSEGMEIVKKVASLEGIILDPVYTGKAFYGLIDGIR 291
Query: 238 RPENAGKLIVVI 249
+ E K I+ I
Sbjct: 292 KKEFGDKPILFI 303
>gnl|CDD|132036 TIGR02991, ectoine_eutB, ectoine utilization protein EutB. Members
of this protein family are EutB, a predicted
arylmalonate decarboxylase found in a conserved ectoine
utilization operon of species that include Sinorhizobium
meliloti 1021 (where it is known to be induced by
ectoine), Mesorhizobium loti, Silicibacter pomeroyi,
Agrobacterium tumefaciens, and Pseudomonas putida.
Members of this family resemble threonine dehydratases.
Length = 317
Score = 32.1 bits (73), Expect = 0.25
Identities = 56/239 (23%), Positives = 94/239 (39%), Gaps = 21/239 (8%)
Query: 25 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAV 84
++ ++GN G LA+ AA + R I M + + +R GAE+ + + +
Sbjct: 70 VVAASTGNHGRALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGRS---QDDA 126
Query: 85 QKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGA 144
Q+ E L ML F++P T G E+ + LV G GG +G
Sbjct: 127 QEEVERLVADRGLTMLPPFDHPDIVAGQ-GTLGLEVVEQMPDLATVLVPLSG-GGLASGV 184
Query: 145 GKFLKEKNPNIKLYGIEPTESPV----LSGGKPG-----PHKIQGIGAGF-----VPGVL 190
+K P+ ++ G+ L G+P P +G G V +
Sbjct: 185 AMAVKAARPDTRVIGVSMERGAAMKASLQAGRPVLVAELPTLADSLGGGIGLDNRVTFAM 244
Query: 191 EVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVI 249
++DE+V VS E I A E + +G AA+ +A + +N G V++
Sbjct: 245 CKALLDEIVLVSEAE-IAAGIRHAYAEEREIVEGAGAVGIAAL-LAGKIKNPGPCAVIV 301
>gnl|CDD|173823 cd00314, plant_peroxidase_like, Heme-dependent peroxidases similar
to plant peroxidases. Along with animal peroxidases,
these enzymes belong to a group of peroxidases
containing a heme prosthetic group (ferriprotoporphyrin
IX), which catalyzes a multistep oxidative reaction
involving hydrogen peroxide as the electron acceptor.
The plant peroxidase-like superfamily is found in all
three kingdoms of life and carries out a variety of
biosynthetic and degradative functions. Several
sub-families can be identified. Class I includes
intracellular peroxidases present in fungi, plants,
archaea and bacteria, called catalase-peroxidases, that
can exhibit both catalase and broad-spectrum peroxidase
activities depending on the steady-state concentration
of hydrogen peroxide. Catalase-peroxidases are typically
comprised of two homologous domains that probably arose
via a single gene duplication event. Class II includes
ligninase and other extracellular fungal peroxidases,
while class III is comprised of classic extracellular
plant peroxidases, like horseradish peroxidase.
Length = 255
Score = 31.7 bits (72), Expect = 0.28
Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 6/64 (9%)
Query: 125 GGRIDAL---VSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 181
GR+DA + G + E K G+ P+E LS G H + G
Sbjct: 108 FGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVALSA---GAHTLGGK 164
Query: 182 GAGF 185
G
Sbjct: 165 NHGD 168
>gnl|CDD|225590 COG3048, DsdA, D-serine dehydratase [Amino acid transport and
metabolism].
Length = 443
Score = 32.0 bits (73), Expect = 0.30
Identities = 56/242 (23%), Positives = 96/242 (39%), Gaps = 36/242 (14%)
Query: 29 TSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAE 88
++GN G+ + M+AA +++ + M A ++ LR+ G +V + G+ AV++
Sbjct: 167 STGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLRSHGVTVVEYEQDYGV--AVEEGR 224
Query: 89 EILAKTPNAYMLQQFENPANPKIHYETTGPELWK---GSGGRIDA-------LVSGIGTG 138
+ PN + + EN + Y L K G +DA L G+G G
Sbjct: 225 KEAESDPNCFFIDD-ENSRTLFLGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGG 283
Query: 139 -GTITGAGKFLKEKNPNIKLYGIEPTESP-VLSGGKPGPHK---IQGIG----------- 182
G + K ++ + EPT SP +L G G H+ +Q IG
Sbjct: 284 PGGVAFGLKLAFGD--HVHCFFAEPTHSPCMLLGVYTGLHEQISVQDIGIDNLTAADGLA 341
Query: 183 ----AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKR 238
+GFV +E ++D V + LA +EG+ + S+ A +
Sbjct: 342 VGRPSGFVGRAME-RLLDGYYTVDDQTLYDLLGWLAQEEGIRLEPSALAGMAGPQRVCAS 400
Query: 239 PE 240
E
Sbjct: 401 VE 402
>gnl|CDD|215524 PLN02970, PLN02970, serine racemase.
Length = 328
Score = 32.0 bits (73), Expect = 0.31
Identities = 34/161 (21%), Positives = 61/161 (37%), Gaps = 21/161 (13%)
Query: 7 SMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA 66
S+ D KG++T +SGN LA A + I +P + + +
Sbjct: 68 SLSDDQAEKGVVTH--------SSGNHAAALALAAKLRGIPAYIVVPKNAPACKVDAVIR 119
Query: 67 FGAELVLTDPAKGMKGAVQKAEEILAK---TPNAYMLQQFENPANPKIHYE-TTGPELWK 122
+G + +P V+ E + A+ A ++ + + I + T E +
Sbjct: 120 YGGIITWCEPT------VESREAVAARVQQETGAVLIHPYNDG--RVISGQGTIALEFLE 171
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPT 163
+D ++ I GG I+G K P+IK+ EP
Sbjct: 172 QVPE-LDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPK 211
>gnl|CDD|235288 PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.
Length = 397
Score = 31.6 bits (73), Expect = 0.37
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 197 EVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV 248
E V ++ DEA+E +LL+ EG+ + S A A A+++A ++IVV
Sbjct: 326 EYVSITDDEALEAFQLLSRLEGIIPALESSHALAYALKLAPTL-GKDQIIVV 376
>gnl|CDD|224269 COG1350, COG1350, Predicted alternative tryptophan synthase
beta-subunit (paralog of TrpB) [General function
prediction only].
Length = 432
Score = 31.6 bits (72), Expect = 0.43
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 195 IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIF 250
I E +E E A L A EG+ S A AAI+ A + G+ V++F
Sbjct: 354 IVEARAYDQEEVFEAAVLFARTEGIVPAPESAHAIKAAIDEALKAREEGEEKVILF 409
>gnl|CDD|177398 PHA02569, 39, DNA topoisomerase II large subunit; Provisional.
Length = 602
Score = 30.9 bits (70), Expect = 0.72
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Query: 185 FVPGVLEVNIIDEVVQVSSDEAIET 209
+VPG+ V IIDE++ S DEAI T
Sbjct: 42 YVPGL--VKIIDEIIDNSVDEAIRT 64
>gnl|CDD|181283 PRK08197, PRK08197, threonine synthase; Validated.
Length = 394
Score = 30.4 bits (69), Expect = 0.92
Identities = 20/48 (41%), Positives = 22/48 (45%)
Query: 28 PTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75
PT+GN G A AA R I MPA R+ GAEL L D
Sbjct: 133 PTNGNAGAAWAAYAARAGIRATIFMPADAPEITRLECALAGAELYLVD 180
>gnl|CDD|130080 TIGR01007, eps_fam, capsular exopolysaccharide family. This model
describes the capsular exopolysaccharide proteins in
bacteria. The exopolysaccharide gene cluster consists of
several genes which encode a number of proteins which
regulate the exoploysaccharide biosynthesis(EPS).
Atleast 13 genes espA to espM in streptococcus species
seem to direct the EPS proteins and all of which share
high homology. Functional roles were characterized by
gene disruption experiments which resulted in
exopolysaccharide-deficient phenotypes [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 204
Score = 30.1 bits (68), Expect = 0.93
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 46 YRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKT 94
Y +I T P + II RA A +++TD + K VQKA+E L +T
Sbjct: 130 YIIIDTPPIGTVTDAAIIARACDASILVTDAGEIKKRDVQKAKEQLEQT 178
>gnl|CDD|237513 PRK13803, PRK13803, bifunctional phosphoribosylanthranilate
isomerase/tryptophan synthase subunit beta; Provisional.
Length = 610
Score = 30.5 bits (69), Expect = 1.2
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 199 VQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV 248
V+ +EA++ KLLA EG+ + S A A E K +++V
Sbjct: 540 TSVTDEEALDAFKLLAKLEGIIPALESSHALAYLKEGRK-KFKKKDIVIV 588
>gnl|CDD|107210 cd06449, ACCD, Aminocyclopropane-1-carboxylate deaminase (ACCD):
Pyridoxal phosphate (PLP)-dependent enzyme which
catalyzes the conversion of
1-aminocyclopropane-L-carboxylate (ACC), a precursor of
the plant hormone ethylene, to alpha-ketobutyrate and
ammonia.
Length = 307
Score = 29.7 bits (67), Expect = 1.4
Identities = 30/129 (23%), Positives = 49/129 (37%), Gaps = 14/129 (10%)
Query: 122 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 181
+ G + D++V TG T G L ++ GI+ + P K ++
Sbjct: 169 EELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKP----EKTKAQVLRIA 224
Query: 182 GAGFVPGVLEVNIIDEVVQ---------VSSDEAIETAKLLALKEGLFVG-ISSGGAAAA 231
A LEV D V+ + +DE IE KL A EG+ + G +
Sbjct: 225 QAKLAEEGLEVKEEDVVLDDDYAAPEYGIPNDETIEAIKLCARLEGIITDPVYEGKSMQG 284
Query: 232 AIEIAKRPE 240
I++ + E
Sbjct: 285 MIDLVRNGE 293
>gnl|CDD|235789 PRK06381, PRK06381, threonine synthase; Validated.
Length = 319
Score = 29.3 bits (66), Expect = 1.9
Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 18/143 (12%)
Query: 9 ISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFG 68
I++A + + G S + T GN G +A+ A + +I +P S S R + +G
Sbjct: 50 IAEAHVRRAMRLGYSGITVGTCGNYGASIAYFARLYGLKAVIFIPRSYSNSRVKEMEKYG 109
Query: 69 AELVLTDPAKGMKGAVQKAEE---ILAKTPNAYMLQQFENP--ANPKIHYETTGP---EL 120
AE++ D G ++A E AK Y NP N + E E+
Sbjct: 110 AEIIYVD------GKYEEAVERSRKFAKENGIYD----ANPGSVNSVVDIEAYSAIAYEI 159
Query: 121 WKGSGGRIDALVSGIGTGGTITG 143
++ G DA+ +G G T+ G
Sbjct: 160 YEALGDVPDAVAVPVGNGTTLAG 182
Score = 28.5 bits (64), Expect = 4.3
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 201 VSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVI 249
S DE ++ A+LL EGL +S A AA ++ K+ ++ VI
Sbjct: 266 FSDDEMVKYAELLRRMEGLNALPASASALAALVKYLKKNGVNDNVVAVI 314
>gnl|CDD|223326 COG0248, GppA, Exopolyphosphatase [Nucleotide transport and
metabolism / Inorganic ion transport and metabolism].
Length = 492
Score = 29.6 bits (67), Expect = 2.0
Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 17/100 (17%)
Query: 135 IGTGGTITGAGKFLKEKNP----NIKLYGIEPTE-----SPVLSGGKPGPHKIQGIGAG- 184
+GT GTI K + + Y I E ++ K++G+
Sbjct: 206 VGTSGTIRALAKLHMAQGSYPLRVLHGYEITAEELEKLLERLIRMTSEERLKLEGLSKDR 265
Query: 185 ---FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFV 221
+ G I++ V + S E + + L+EG+
Sbjct: 266 ADVILAGAA---ILEAVFEALSIERMIVSD-GGLREGVLY 301
>gnl|CDD|107208 cd06447, D-Ser-dehyd, D-Serine dehydratase is a pyridoxal phosphate
(PLP)-dependent enzyme which catalyzes the conversion of
L- or D-serine to pyruvate and ammonia. D-serine
dehydratase serves as a detoxifying enzyme in most E.
coli strains where D-serine is a competitive antagonist
of beta-alanine in the biosynthetic pathway to
pentothenate and coenzyme A. D-serine dehydratase is
different from other pyridoxal-5'-phosphate-dependent
enzymes in that it catalyzes alpha, beta-elimination
reactions on amino acids.
Length = 404
Score = 29.6 bits (67), Expect = 2.0
Identities = 63/273 (23%), Positives = 105/273 (38%), Gaps = 54/273 (19%)
Query: 6 YSMISDAEAKGL-----ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLER 60
YS ++ + + L I G ++GN G+ + MAAA +++ + M A +
Sbjct: 120 YSKLASEKFRKLFSQYSIAVG-------STGNLGLSIGIMAAALGFKVTVHMSADAKQWK 172
Query: 61 RIILRAFGAELVL--TDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 118
+ LR+ G +V TD +K AV++ + A P Y + EN + + Y
Sbjct: 173 KDKLRSKGVTVVEYETDYSK----AVEEGRKQAAADPMCYFVDD-ENSRDLFLGYAVAAS 227
Query: 119 EL---WKGSGGRIDA-------LVSGIG--TGGTITGAGKFLKEKNPNIKLYGIEPTESP 166
L G ++DA L G+G GG G + N+ + EPT SP
Sbjct: 228 RLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGD---NVHCFFAEPTHSP 284
Query: 167 -VLSGGKPGPHK---IQGIG---------------AGFVPGVLEVNIIDEVVQVSSDEAI 207
+L G G H +Q IG +G V ++E ++ + V DE
Sbjct: 285 CMLLGMATGLHDKISVQDIGIDNRTAADGLAVGRPSGLVGKLME-PLLSGIYTVEDDELY 343
Query: 208 ETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 240
+L E + V S+ ++ E
Sbjct: 344 RLLAMLKDSENIEVEPSAAAGFTGPAQVLSEAE 376
>gnl|CDD|224323 COG1405, SUA7, Transcription initiation factor TFIIIB, Brf1
subunit/Transcription initiation factor TFIIB
[Transcription].
Length = 285
Score = 29.2 bits (66), Expect = 2.0
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 195 IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIA 236
+ + V+ +AIE K A + GL G S G AAAAI +A
Sbjct: 207 LSDEVR---RKAIEIVKK-AKRAGLTAGKSPAGLAAAAIYLA 244
>gnl|CDD|183851 PRK13028, PRK13028, tryptophan synthase subunit beta; Provisional.
Length = 402
Score = 29.4 bits (67), Expect = 2.3
Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 41/155 (26%)
Query: 129 DALVSGIGTG----GTITGAGKFLKEKNPNIKLYGIEPT--------ESPVLSGGKPG-- 174
DA+V+ +G G G + FL +++ ++L G+EP + L+ GKPG
Sbjct: 232 DAVVACVGGGSNAIGLFSA---FLDDES--VRLVGVEPAGRGLDLGEHAATLTLGKPGVI 286
Query: 175 --------------PHKIQGIGAGF-VPGV------LEVNIIDEVVQVSSDEAIETAKLL 213
P + I AG PGV L+ E V + +EA++ LL
Sbjct: 287 HGFKSYVLQDEDGEPAPVHSIAAGLDYPGVGPEHAYLKDIGRVEYVTATDEEALDAFFLL 346
Query: 214 ALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV 248
+ EG+ + S A A AI++A + + I+V
Sbjct: 347 SRTEGIIPALESSHAVAYAIKLAPE-LSKDETILV 380
>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the
zinc-dependent alcohol dehydrogenases (ADH). This group
contains the hypothetical TM0436 alcohol dehydrogenase
from Thermotoga maritima, proteins annotated as
5-exo-alcohol dehydrogenase, and other members of the
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
MDR, which contains the zinc-dependent alcohol
dehydrogenase (ADH-Zn) and related proteins, is a
diverse group of proteins related to the first
identified member, class I mammalian ADH. MDRs display
a broad range of activities and are distinguished from
the smaller short chain dehydrogenases (~ 250 amino
acids vs. the ~ 350 amino acids of the MDR). The MDR
proteins have 2 domains: a C-terminal NAD(P)
binding-Rossmann fold domain of a beta-alpha form and an
N-terminal catalytic domain with distant homology to
GroES. The MDR group contains a host of activities,
including the founding alcohol dehydrogenase (ADH),
quinone reductase, sorbitol dehydrogenase, formaldehyde
dehydrogenase, butanediol DH, ketose reductase, cinnamyl
reductase, and numerous others. The zinc-dependent
alcohol dehydrogenases (ADHs) catalyze the
NAD(P)(H)-dependent interconversion of alcohols to
aldehydes or ketones. Active site zinc has a catalytic
role, while structural zinc aids in stability.
Length = 361
Score = 29.1 bits (66), Expect = 2.3
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQ--YRLIITMPASMSLERRIILRAFGAE 70
+ G + G++V+++ G +GL +AAAK R +I + S ER + R FGA+
Sbjct: 170 DRAGPVGAGDTVVVQ---GAGPLGLYAVAAAKLAGARRVIVIDGSP--ERLELAREFGAD 224
Query: 71 LVL 73
+
Sbjct: 225 ATI 227
>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
This group is a member of the medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, but lacks the zinc-binding
sites of the zinc-dependent alcohol dehydrogenases. The
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 328
Score = 28.7 bits (65), Expect = 2.9
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 15 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73
+ PG+SVLI S + G+ +A A +I T + + E+R L A GA V+
Sbjct: 139 LAGLRPGDSVLITAASSSVGLAAIQIANAAGATVIAT---TRTSEKRDALLALGAAHVI 194
>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily. This
subfamily of the AAA family ATPases includes two members
each from three archaeal species. It also includes yeast
CDC48 (cell division control protein 48) and the human
ortholog, transitional endoplasmic reticulum ATPase
(valosin-containing protein). These proteins in
eukaryotes are involved in the budding and transfer of
membrane from the transitional endoplasmic reticulum to
the Golgi apparatus.
Length = 733
Score = 29.1 bits (65), Expect = 2.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 209 TAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVI 249
TA L ++ G FV I G + AI RP++ G+ I+ +
Sbjct: 25 TAARLGVEPGDFVEIEKGDRSVVAIVWPLRPDDEGRGIIRM 65
>gnl|CDD|223363 COG0286, HsdM, Type I restriction-modification system
methyltransferase subunit [Defense mechanisms].
Length = 489
Score = 28.5 bits (64), Expect = 4.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 136 GTGGTITGAGKFLKEKNPNIKLYGIE 161
G+GG + A K+LK I +YG E
Sbjct: 196 GSGGMLLQAAKYLKRHQDEIFIYGQE 221
>gnl|CDD|238692 cd01398, RPI_A, RPI_A: Ribose 5-phosphate isomerase type A (RPI_A)
subfamily; RPI catalyzes the reversible conversion of
ribose-5-phosphate to ribulose 5-phosphate, the first
step of the non-oxidative branch of the pentose
phosphate pathway. This reaction leads to the conversion
of phosphosugars into glycolysis intermediates, which
are precursors for the synthesis of amino acids,
vitamins, nucleotides, and cell wall components. In
plants, RPI is part of the Calvin cycle as ribulose
5-phosphate is the carbon dioxide receptor in the first
dark reaction of photosynthesis. There are two unrelated
types of RPIs (A and B), which catalyze the same
reaction, at least one type of RPI is present in an
organism. RPI_A is more widely distributed than RPI_B in
bacteria, eukaryotes, and archaea.
Length = 213
Score = 28.2 bits (64), Expect = 4.4
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 216 KEGLFVGISSGGAAAAAIE-IAKRPENAGKLIVVIFPSF 253
++G+ +G+ +G A IE + +R G IV + SF
Sbjct: 14 EDGMVIGLGTGSTVAYFIEALGERVREEGLNIVGVPTSF 52
>gnl|CDD|176213 cd08251, polyketide_synthase, polyketide synthase. Polyketide
synthases produce polyketides in step by step mechanism
that is similar to fatty acid synthesis. Enoyl reductase
reduces a double to single bond. Erythromycin is one
example of a polyketide generated by 3 complex enzymes
(megasynthases). 2-enoyl thioester reductase (ETR)
catalyzes the NADPH-dependent dependent conversion of
trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA)
to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl
thioester reductase activity has been linked in Candida
tropicalis as essential in maintaining mitiochondrial
respiratory function. This ETR family is a part of the
medium chain dehydrogenase/reductase family, but lack
the zinc coordination sites characteristic of the
alcohol dehydrogenases in this family.
NAD(P)(H)-dependent oxidoreductases are the major
enzymes in the interconversion of alcohols and
aldehydes, or ketones. Alcohol dehydrogenase in the
liver converts ethanol and NAD+ to acetaldehyde and
NADH, while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. ADH is a member of the medium
chain alcohol dehydrogenase family (MDR), which have a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is comprised
of 2 structurally similar halves, each of which contacts
a mononucleotide. The N-terminal catalytic domain has a
distant homology to GroES. These proteins typically form
dimers (typically higher plants, mammals) or tetramers
(yeast, bacteria), and have 2 tightly bound zinc atoms
per subunit, a catalytic zinc at the active site, and a
structural zinc in a lobe of the catalytic domain.
NAD(H)-binding occurs in the cleft between the catalytic
and coenzyme-binding domains at the active site, and
coenzyme binding induces a conformational closing of
this cleft. Coenzyme binding typically precedes and
contributes to substrate binding.
Length = 303
Score = 28.2 bits (63), Expect = 4.5
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 9 ISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFG 68
+ DA A+ + GE +LI+ +G TG+ +A K + T + S ++ L+ G
Sbjct: 109 VIDAFARAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYAT---ASSDDKLEYLKQLG 165
>gnl|CDD|187632 cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid
dehydrogenase-like, classical (c) SDRs.
17beta-hydroxysteroid dehydrogenases are a group of
isozymes that catalyze activation and inactivation of
estrogen and androgens. SDRs are a functionally diverse
family of oxidoreductases that have a single domain with
a structurally conserved Rossmann fold (alpha/beta
folding pattern with a central beta-sheet), an
NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Classical SDRs are typically about
250 residues long, while extended SDRs are approximately
350 residues. Sequence identity between different SDR
enzymes are typically in the 15-30% range, but the
enzymes share the Rossmann fold NAD-binding motif and
characteristic NAD-binding and catalytic sequence
patterns. These enzymes catalyze a wide range of
activities including the metabolism of steroids,
cofactors, carbohydrates, lipids, aromatic compounds,
and amino acids, and act in redox sensing. Classical
SDRs have an TGXXX[AG]XG cofactor binding motif and a
YXXXK active site motif, with the Tyr residue of the
active site motif serving as a critical catalytic
residue (Tyr-151, human 15-hydroxyprostaglandin
dehydrogenase (15-PGDH) numbering). In addition to the
Tyr and Lys, there is often an upstream Ser (Ser-138,
15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH
numbering) contributing to the active site; while
substrate binding is in the C-terminal region, which
determines specificity. The standard reaction mechanism
is a 4-pro-S hydride transfer and proton relay involving
the conserved Tyr and Lys, a water molecule stabilized
by Asn, and nicotinamide. Extended SDRs have additional
elements in the C-terminal region, and typically have a
TGXXGXXG cofactor binding motif. Complex (multidomain)
SDRs such as ketoreductase domains of fatty acid
synthase have a GGXGXXG NAD(P)-binding motif and an
altered active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Some atypical SDRs have lost catalytic activity and/or
have an unusual NAD(P)-binding motif and missing or
unusual active site residues. Reactions catalyzed within
the SDR family include isomerization, decarboxylation,
epimerization, C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 248
Score = 28.0 bits (63), Expect = 5.2
Identities = 32/126 (25%), Positives = 46/126 (36%), Gaps = 46/126 (36%)
Query: 24 VLIEPTSGNTGIG--LAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV---LTDPAK 78
VLI S GIG LA AA+ YR+I T LE L E++ +TD
Sbjct: 3 VLITGCSS--GIGLALALALAAQGYRVIATARNPDKLESLGELLNDNLEVLELDVTDEE- 59
Query: 79 GMKGAVQKA-EEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALV--SGI 135
+++ A +E++ + GRID LV +G
Sbjct: 60 ----SIKAAVKEVIER-------------------------------FGRIDVLVNNAGY 84
Query: 136 GTGGTI 141
G G +
Sbjct: 85 GLFGPL 90
>gnl|CDD|232896 TIGR00260, thrC, threonine synthase. Involved in threonine
biosynthesis it catalyses the reaction
O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE +
ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor.
the enzyme is distantly related to the serine/threonine
dehydratases which are also pyridoxal-phosphate
dependent enzymes. the pyridoxal-phosphate binding site
is a Lys (K) residues present at residue 70 of the model
[Amino acid biosynthesis, Aspartate family].
Length = 328
Score = 28.1 bits (63), Expect = 5.8
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 201 VSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAK 237
VS +E +E KLLA +EG FV S + AA +++ +
Sbjct: 269 VSDEEILEAIKLLAREEGYFVEPHSAVSVAALLKLVE 305
>gnl|CDD|235757 PRK06260, PRK06260, threonine synthase; Validated.
Length = 397
Score = 28.0 bits (63), Expect = 6.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 199 VQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAI 233
VS +E ++ KLLA KEG+ V +S + A I
Sbjct: 311 EAVSDEEILDAQKLLARKEGIGVEPASAASVAGLI 345
>gnl|CDD|183059 PRK11253, ldcA, L,D-carboxypeptidase A; Provisional.
Length = 305
Score = 27.6 bits (62), Expect = 6.9
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 19/59 (32%)
Query: 92 AKTPNAYMLQQFEN-------------PANPKIHYETTGPELWKGSGGRIDALVSGIGT 137
A+T NA+ F P P E T LW GG + L+S IGT
Sbjct: 135 AETLNAFTEHHFWLALRNPTFTIEWQGPQGPTCRVEGT---LW---GGNLAMLISLIGT 187
>gnl|CDD|180565 PRK06450, PRK06450, threonine synthase; Validated.
Length = 338
Score = 27.4 bits (61), Expect = 7.8
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 27 EPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQK 86
E +SGN G +A AA + I +P + S + + ++GAE+V +G + V K
Sbjct: 102 EDSSGNAGASIAAYGAAAGIEVKIFVPETASGGKLKQIESYGAEVV---RVRGSREDVAK 158
Query: 87 AEE 89
A E
Sbjct: 159 AAE 161
>gnl|CDD|223244 COG0166, Pgi, Glucose-6-phosphate isomerase [Carbohydrate transport
and metabolism].
Length = 446
Score = 27.7 bits (62), Expect = 8.2
Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 7/59 (11%)
Query: 198 VVQVSSDEAIETAKLLALKEGLFVGIS-SGG------AAAAAIEIAKRPENAGKLIVVI 249
V V E K L + LF+ IS SG A + ++ E A K V
Sbjct: 114 VSNVDPTYLAEVLKKLDPETTLFIVISKSGTTLETLTNFRLARKWLEKKEEAAKKHFVA 172
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family
contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 27.0 bits (60), Expect = 8.3
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 204 DEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV 248
+ L L + VG S GGA A A A+RPE L+++
Sbjct: 53 ADLAALLDALGLGPVVLVGHSLGGAVALAA-AARRPERVAGLVLI 96
>gnl|CDD|131079 TIGR02024, FtcD, glutamate formiminotransferase. This model
represents the tetrahydrofolate (THF) dependent
glutamate formiminotransferase involved in the histidine
utilization pathway. This enzyme interconverts
L-glutamate and N-formimino-L-glutamate. The enzyme is
bifunctional as it also catalyzes the cyclodeaminase
reaction on N-formimino-THF, converting it to
5,10-methenyl-THF and releasing ammonia - part of the
process of regenerating THF. This model covers enzymes
from metazoa as well as gram-positive bacteria and
archaea. In humans, deficiency of this enzyme results in
a disease phenotype. The crystal structure of the enzyme
has been studied in the context of the catalytic
mechanism [Energy metabolism, Amino acids and amines].
Length = 298
Score = 27.4 bits (61), Expect = 9.3
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 138 GGTITGAGKFLKEKNPNIKLYGIEPTESPVL----SGGKPGPHKIQGIG 182
G T TGA KFL N N+ +E + GG G ++ IG
Sbjct: 172 GATATGARKFLIAFNVNLGTSNLEIAKKIAKAIRFQGG--GLRFVKAIG 218
>gnl|CDD|215233 PLN02424, PLN02424, ketopantoate hydroxymethyltransferase.
Length = 332
Score = 27.4 bits (61), Expect = 9.4
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 202 SSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAG 243
S+D+A+E+A + LKEG + G + + + AK AG
Sbjct: 111 STDQAVESAVRM-LKEGGMDAVKLEGGSPSRVTAAKAIVEAG 151
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.135 0.377
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,727,514
Number of extensions: 1492992
Number of successful extensions: 1594
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1524
Number of HSP's successfully gapped: 135
Length of query: 277
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 181
Effective length of database: 6,679,618
Effective search space: 1209010858
Effective search space used: 1209010858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.1 bits)