RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 023801
(277 letters)
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Length = 322
Score = 543 bits (1402), Expect = 0.0
Identities = 227/276 (82%), Positives = 252/276 (91%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
RIG+SMISDAE KGLI PGESVLIEPTSGNTG+GLAF AAAK Y+LIITMPASMS ERR
Sbjct: 47 DRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERR 106
Query: 62 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 121
IIL AFG ELVLTDPAKGMKGA+ KAEEILAKTPN YMLQQFENPANPKIHYETTGPE+W
Sbjct: 107 IILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIW 166
Query: 122 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 181
KG+GG+ID VSGIGTGGTITGAGK+LKE+N N+KLYG+EP ES +LSGGKPGPHKIQGI
Sbjct: 167 KGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGI 226
Query: 182 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 241
GAGF+P VL V++IDEVVQVSSDE+I+ A+ LALKEGL VGISSG AAAAAI++A+RPEN
Sbjct: 227 GAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPEN 286
Query: 242 AGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFEA 277
AGKL V IFPSFGERYLS+VLF++ RKEAE+MTFEA
Sbjct: 287 AGKLFVAIFPSFGERYLSTVLFDATRKEAEAMTFEA 322
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP
dependent enzyme, serine ACET transferase; HET: LLP;
1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A* 4air_A*
Length = 334
Score = 539 bits (1390), Expect = 0.0
Identities = 145/273 (53%), Positives = 197/273 (72%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
R+G+++ AE +G + PG+S+++E +SGNTG+ LA + A + Y++IITMP SMSLERR
Sbjct: 52 DRLGFAIYDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERR 111
Query: 62 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 121
+LR FGAE++LT A GMKGAV A++I+A PNA + QF N IH ETTGPE+W
Sbjct: 112 CLLRIFGAEVILTPAALGMKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIW 171
Query: 122 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 181
+ + +D ++G+GTGGT+TG + LK+ + ++ +EPTESPVLSGGKPGPHKIQGI
Sbjct: 172 EQTNHNVDCFIAGVGTGGTLTGVARALKKMGSHARIVAVEPTESPVLSGGKPGPHKIQGI 231
Query: 182 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 241
G GFVP VL+ ++IDEV+ V+ D+AIETA L +G+F G S G AA++IA+RPE
Sbjct: 232 GPGFVPDVLDRSLIDEVLCVAGDDAIETALKLTRSDGVFCGFSGGANVYAALKIAERPEM 291
Query: 242 AGKLIVVIFPSFGERYLSSVLFESVRKEAESMT 274
GK IV + PSFGERYLS+ L+ SVR E S+
Sbjct: 292 EGKTIVTVIPSFGERYLSTTLYRSVRDEVSSLP 324
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis,
assimilatory sulfate reduction, S plant inorganic sulfur
uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Length = 430
Score = 541 bits (1397), Expect = 0.0
Identities = 205/275 (74%), Positives = 244/275 (88%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
RIGYSM++DAE KG I+PG+SVL+EPTSGNTGIGLAF+AA++ YRLI+TMPASMS+ERR
Sbjct: 155 DRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERR 214
Query: 62 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 121
++L+AFGAELVLTDPAKGM GAVQKAEEIL TP+AYMLQQF+NPANPKIHYETTGPE+W
Sbjct: 215 VLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIW 274
Query: 122 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 181
+ G++D V+GIGTGGTITG G+F+KEKNP ++ G+EPTES +LSGGKPGPHKIQGI
Sbjct: 275 DDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGI 334
Query: 182 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 241
GAGF+P L+ I+DEV+ +SS+EAIETAK LALKEGL VGISSG AAAAAI++AKRPEN
Sbjct: 335 GAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPEN 394
Query: 242 AGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 276
AGKLI V+FPSFGERYLS+ LF+S+R+E E M E
Sbjct: 395 AGKLIAVVFPSFGERYLSTPLFQSIREEVEKMQPE 429
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism,
cysteine biosynthesis, transferase; HET: LLP; 1.80A
{Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Length = 313
Score = 522 bits (1347), Expect = 0.0
Identities = 148/266 (55%), Positives = 200/266 (75%), Gaps = 1/266 (0%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
RIG +M+ AE GLI P ++++EPTSGNTGI LA + AA+ YR ++TMP +MSLERR
Sbjct: 48 DRIGVAMLQAAEQAGLIKPD-TIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERR 106
Query: 62 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 121
++LRA+GAEL+LT A GM GA+ KAEE+ ++ QQFENPANP IH TT E+W
Sbjct: 107 MLLRAYGAELILTPGADGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVW 166
Query: 122 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 181
+ + G++D +V+G+GTGGTITG + +KE+ P+ + +EP SPVLSGG+ GPH IQGI
Sbjct: 167 RDTDGKVDIVVAGVGTGGTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGI 226
Query: 182 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 241
GAGFVP VL+ +++DE++ V +++A+ A+ LA +EGL VGISSG A AA+++A+RPEN
Sbjct: 227 GAGFVPPVLDQDLVDEIITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPEN 286
Query: 242 AGKLIVVIFPSFGERYLSSVLFESVR 267
AGKLIVV+ P FGERYLS+ LF V
Sbjct: 287 AGKLIVVVLPDFGERYLSTPLFADVA 312
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba
histolytica} PDB: 3bm5_A*
Length = 343
Score = 505 bits (1304), Expect = 0.0
Identities = 115/273 (42%), Positives = 177/273 (64%), Gaps = 4/273 (1%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
R+G++++ A G + PG +IE TSGNTGI L A YR+ I MP++MS+ER+
Sbjct: 59 DRVGFNIVYQAIKDGRLKPG-MEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQ 117
Query: 62 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAY-MLQQFENPANPKIHYETTGPEL 120
+I++AFGAEL+LT+ KGM GA+++ +++ + P Y + QF NP N H+ T E+
Sbjct: 118 MIMKAFGAELILTEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHH-YTANEI 176
Query: 121 WKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQG 180
W+ + G +D +VS +GT GT+ G + LKEK IK+ +EP ES VL G GPH IQG
Sbjct: 177 WEDTDGEVDIVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQG 236
Query: 181 IGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 240
IGAGF+P + + +DE++ + + +A + A+ + +G+ G+SSG A A ++ A++PE
Sbjct: 237 IGAGFIPDIYKKEFVDEIIPIKTQDAWKMARAVVKYDGIMCGMSSGAAILAGLKEAEKPE 296
Query: 241 NAGKLIVVIFPSFGERYLSSVLFESVRKEAESM 273
N GK IV+I PS GERYLS+ L++ ++ E +
Sbjct: 297 NEGKTIVIIVPSCGERYLSTDLYK-IKDEGTKI 328
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY
crystallography, sulfhydrylase; HET: LLP; 1.55A
{Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X*
3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Length = 316
Score = 504 bits (1301), Expect = 0.0
Identities = 151/274 (55%), Positives = 196/274 (71%), Gaps = 9/274 (3%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
CRIG +M+ AE G +T G +++ TSGNTGI LA++AAA+ Y++ +TMP +MSLER+
Sbjct: 43 CRIGANMVWQAEKDGTLTKG-KEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERK 101
Query: 62 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAY-MLQQFENPANPKIHYETTGPEL 120
+L G LVLT+ AKGMKGA+ KAEEI+A P+ Y ML+QFENPANP+IH ETTGPE+
Sbjct: 102 RLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEI 161
Query: 121 WKGSGGRIDALVSGIGTGGTITGAGKFLK-EKNPNIKLYGIEPTESPVLSGG------KP 173
WK + G++D +V+G+GTGG+ITG + +K + I +EP ESPV+S KP
Sbjct: 162 WKDTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKP 221
Query: 174 GPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAI 233
GPHKIQGIGAGF+P L+++IID V V SD A+ TA+ L +EG+ GISSG A AAA
Sbjct: 222 GPHKIQGIGAGFIPKNLDLSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAAD 281
Query: 234 EIAKRPENAGKLIVVIFPSFGERYLSSVLFESVR 267
+AK PE A KLIVVI PS ERYLS+ LFE +
Sbjct: 282 RLAKLPEFADKLIVVILPSASERYLSTALFEGIE 315
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1
PDB: 2eco_A* 2ecq_A* 2efy_A*
Length = 304
Score = 502 bits (1294), Expect = 0.0
Identities = 138/264 (52%), Positives = 188/264 (71%), Gaps = 3/264 (1%)
Query: 2 CRIGYSMISDAEAKGLITPG-ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLER 60
R + MI DAE +G++ PG V++EPTSGNTGIGLA +AA++ YRLI+TMPA MS ER
Sbjct: 41 DRPAWYMIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEER 100
Query: 61 RIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPEL 120
+ +L+AFGAELVLTDP + M A ++A L + A+M QF+NPAN + HYETTGPEL
Sbjct: 101 KRVLKAFGAELVLTDPERRMLAAREEALR-LKEELGAFMPDQFKNPANVRAHYETTGPEL 159
Query: 121 WKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQG 180
++ GRIDA V G GTGGTITG G++LKE+ P++K+ +EP S VLSGGK G H QG
Sbjct: 160 YEALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQG 219
Query: 181 IGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 240
+G GF+P L+++++D V+QV ++A A+ LA +EGLF+G+SSGG AA+++A R
Sbjct: 220 MGPGFIPENLDLSLLDGVIQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQVA-REL 278
Query: 241 NAGKLIVVIFPSFGERYLSSVLFE 264
GK + I P G +YLS+ L+
Sbjct: 279 GPGKRVACISPDGGWKYLSTPLYA 302
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics,
NPPSFA, NAT project on protein structural and functional
analyses; 1.90A {Geobacillus kaustophilus}
Length = 308
Score = 488 bits (1259), Expect = e-177
Identities = 149/263 (56%), Positives = 195/263 (74%), Gaps = 3/263 (1%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
RI +MI AE G + PG ++EPTSGNTGIGLA +AAAK Y+ ++ MP +MSLERR
Sbjct: 46 DRIALAMIEAAEKAGKLKPG-DTIVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERR 104
Query: 62 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 121
+LRA+GAELVLT A+GM+GA+ KAEE L + +M QQF+N ANP+IH TTG E+
Sbjct: 105 NLLRAYGAELVLTPGAQGMRGAIAKAEE-LVREHGYFMPQQFKNEANPEIHRLTTGKEIV 163
Query: 122 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 181
+ G ++DA V+G+GTGGTITGAGK L+E PNIK+Y +EP +SPVLSGGKPGPHKIQGI
Sbjct: 164 EQMGDQLDAFVAGVGTGGTITGAGKVLREAYPNIKIYAVEPADSPVLSGGKPGPHKIQGI 223
Query: 182 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 241
GAGFVP +L+ +I D V+ V+++EA A+ A +EG+ GISSG A AA+++AK
Sbjct: 224 GAGFVPDILDTSIYDGVITVTTEEAFAAARRAAREEGILGGISSGAAIHAALKVAKE-LG 282
Query: 242 AGKLIVVIFPSFGERYLSSVLFE 264
GK ++ I PS GERYLS+ L++
Sbjct: 283 KGKKVLAIIPSNGERYLSTPLYQ 305
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J
protein structure initiative, joint center for
structural G transferase; 1.80A {Thermotoga maritima}
SCOP: c.79.1.1 PDB: 3fca_A*
Length = 303
Score = 476 bits (1227), Expect = e-172
Identities = 133/261 (50%), Positives = 179/261 (68%), Gaps = 6/261 (2%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
R MI DAE +GL+ G ++EPTSGN GI +A + A + +R+I+TMP +MS+ERR
Sbjct: 48 DRPALFMILDAEKRGLLKNG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERR 104
Query: 62 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 121
+L+ GAELVLT GMKGAV+KA E +++ A+ML QFENP N H TTGPE+
Sbjct: 105 KVLKMLGAELVLTPGELGMKGAVEKALE-ISRETGAHMLNQFENPYNVYSHQFTTGPEIL 163
Query: 122 KGSGGRIDALVSGIGTGGTITGAGKFLKEK-NPNIKLYGIEPTESPVLSGGKPGPHKIQG 180
K +IDA V+G+GTGGTI+G G+ LK +K+ +EP +SPVLSGG+PG H IQG
Sbjct: 164 KQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQG 223
Query: 181 IGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 240
IGAGFVP +L+ ++IDEV+ V +EA E A+ LA KEGL VGISSG AAA+++A++
Sbjct: 224 IGAGFVPKILDRSVIDEVITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLG 283
Query: 241 NAGKLIVVIFPSFGERYLSSV 261
+ +V + P ERYLS +
Sbjct: 284 PDAR-VVTVAPDHAERYLSIL 303
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp
fold, amino-acid biosynthesis; HET: PLP; 1.53A
{Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A*
3dwi_A*
Length = 325
Score = 453 bits (1168), Expect = e-162
Identities = 100/274 (36%), Positives = 146/274 (53%), Gaps = 11/274 (4%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
R MI AEA GL+ PG + ++EPTSGNTGI LA A K YRLI MP + S+ERR
Sbjct: 54 DRPAVRMIEQAEADGLLRPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERR 112
Query: 62 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 121
+L +GA+++ + G AV A+E+ A P+ ML Q+ NPAN HY TGPEL
Sbjct: 113 QLLELYGAQIIFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELL 172
Query: 122 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 181
I V+G+GT GT+ G G+FL+E N+K+ EP G + ++ +
Sbjct: 173 ADL-PEITHFVAGLGTTGTLMGTGRFLREHVANVKIVAAEPRYG-------EGVYALRNM 224
Query: 182 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 241
GFVP + + I+ V + +A+ + L EG+F GIS+G AA+ +
Sbjct: 225 DEGFVPELYDPEILTARYSVGAVDAVRRTRELVHTEGIFAGISTGAVLHAALGVGAGALA 284
Query: 242 AGK--LIVVIFPSFGERYLSSVLFESVRKEAESM 273
AG+ I ++ G +YLS+ + +AE+
Sbjct: 285 AGERADIALVVADAGWKYLSTGAYAGSLDDAETA 318
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis,
transferase, ENZ kinetics, enzymatic sythesis of novel
compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB:
2bhs_A* 2bht_A* 2jc3_A*
Length = 303
Score = 441 bits (1137), Expect = e-158
Identities = 113/263 (42%), Positives = 163/263 (61%), Gaps = 11/263 (4%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
R SMI +AE +G I PG VLIE TSGNTGI LA +AA K YR+ + MP +MS ERR
Sbjct: 42 DRAALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERR 100
Query: 62 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 121
+RA+GAEL+L +GM+GA A E+ + +L QF NP NP HY TTGPE+W
Sbjct: 101 AAMRAYGAELILVTKEQGMEGARDLALEMANRGEG-KLLDQFNNPDNPYAHYTTTGPEIW 159
Query: 122 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 181
+ +GGRI VS +GT GTITG +F++E++ + + G++P E + G + P
Sbjct: 160 QQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPT----- 214
Query: 182 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 241
++PG+ +++DEV+ + +A T + LA++EG+F G+SSGGA A A+ +A N
Sbjct: 215 --EYLPGIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAA--AN 270
Query: 242 AGKLIVVIFPSFGERYLSSVLFE 264
++V I G+RYLS+ +F
Sbjct: 271 PDAVVVAIICDRGDRYLSTGVFG 293
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase;
HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Length = 389
Score = 427 bits (1101), Expect = e-151
Identities = 61/264 (23%), Positives = 120/264 (45%), Gaps = 15/264 (5%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R +IS + + G S++ + TS N G+ L+ +A YR + +P + ++
Sbjct: 129 RPAVEIISRLSRR--VEKG-SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKL 185
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
+ R GA++++ A + + + +K + QF N AN + H T E++
Sbjct: 186 LPRLLGAQVIVDPEAPSTVHLLPRVMK-DSKNEGFVHVNQFYNDANFEAHMRGTAREIFV 244
Query: 123 ---GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQ 179
G + + +GT G ++ A +L+ +P+I+ ++P + + G I+
Sbjct: 245 QSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPG-------IR 297
Query: 180 GIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 239
+ G + + ++I + +V+ +EA+E +A +GL +G S G A A + A
Sbjct: 298 RVETGMLW-INMLDISYTLAEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEG 356
Query: 240 ENAGKLIVVIFPSFGERYLSSVLF 263
+ VV+ P G +YLS V
Sbjct: 357 DLEPGDYVVVVPDTGFKYLSLVQN 380
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 415 bits (1069), Expect = e-145
Identities = 97/270 (35%), Positives = 152/270 (56%), Gaps = 10/270 (3%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RIGY M+ DAE +GL+ PG +IEPTSGNTGIGLA A K Y+ II MP MS E+
Sbjct: 95 RIGYRMVQDAEEQGLLKPG-YTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVS 153
Query: 63 ILRAFGAELVLTD---PAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPE 119
LR GA+++ T +G + A+++ +TPN+ +L Q+ N NP HY+ T E
Sbjct: 154 ALRTLGAKIIRTPTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAE 213
Query: 120 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV-----LSGGKPG 174
+ ++D +V GT GTI+G G+ +KE+ P+ ++ G++P S + L+
Sbjct: 214 ILWQLDNKVDMIVVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQ 273
Query: 175 PHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIE 234
++++GIG F P V + ++D ++ + ++ L +EGL G SSGGA AA+E
Sbjct: 274 FYEVEGIGYDFPPTVFDDTVVDVWTKIGDSDCFPMSRRLNAEEGLLCGGSSGGAMHAALE 333
Query: 235 IAKRPENAGKLIVVIFPSFGERYLSSVLFE 264
A++ G+ VVI P Y++ + +
Sbjct: 334 HARK-LKKGQRCVVILPDGIRNYMTKFVSD 362
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of
PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens}
SCOP: c.79.1.1 PDB: 1m54_A*
Length = 435
Score = 408 bits (1051), Expect = e-143
Identities = 105/270 (38%), Positives = 158/270 (58%), Gaps = 10/270 (3%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RI MI DAE G + PG +IEPTSGNTGIGLA AA + YR II MP MS E+
Sbjct: 143 RISLRMIEDAERDGTLKPG-DTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVD 201
Query: 63 ILRAFGAELVLTD---PAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPE 119
+LRA GAE+V T + V A + + PN+++L Q+ N +NP HY+TT E
Sbjct: 202 VLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADE 261
Query: 120 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV-----LSGGKPG 174
+ + G++D LV+ +GTGGTITG + LKEK P ++ G++P S + L+ +
Sbjct: 262 ILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQT 321
Query: 175 PHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIE 234
++++GIG F+P VL+ ++D+ + + +EA A++L +EGL G S+G A A++
Sbjct: 322 TYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVK 381
Query: 235 IAKRPENAGKLIVVIFPSFGERYLSSVLFE 264
A+ + G+ VVI P Y++ L +
Sbjct: 382 AAQELQ-EGQRCVVILPDSVRNYMTKFLSD 410
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme,
tryptophan synthase beta like PLP-dependent enzymes
superfamily; HET: IT1; 2.00A {Escherichia coli} PDB:
4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Length = 398
Score = 79.1 bits (195), Expect = 5e-17
Identities = 46/235 (19%), Positives = 75/235 (31%), Gaps = 29/235 (12%)
Query: 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGA 83
T GN G G+A+ A +I MP + ER + GAE ++TD
Sbjct: 114 TFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNYDD--T 171
Query: 84 VQKAEEILAKTPNAYMLQQFENPANPKIH------YETTGPELW---KGSGGRIDALVSG 134
V+ + A+ ++Q KI Y T E + G ++
Sbjct: 172 VRLTMQ-HAQQHGWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMREMGVTPTHVLLQ 230
Query: 135 IGTGGTITGAGKFLKE--KNPNIKLYGIEPTESPV----LSGGKPGPHKIQ------GIG 182
G G G +L + N+ +EP ++ G G+
Sbjct: 231 AGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCIYRSGVKGDIVNVGGDMATIMAGLA 290
Query: 183 AGFVPGVLEVNII----DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAI 233
G P L I+ + + A ++L G I SG + A +
Sbjct: 291 CG-EPNPLGWEILRNCATQFISCQDSVAALGMRVLGNPYGNDPRIISGESGAVGL 344
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P
5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli}
PDB: 3ss9_X* 3r0x_A* 3r0z_A
Length = 442
Score = 77.9 bits (192), Expect = 2e-16
Identities = 47/262 (17%), Positives = 85/262 (32%), Gaps = 32/262 (12%)
Query: 6 YSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR 65
YS + E K + + ++GN G+ + M+A +++ + M A ++ LR
Sbjct: 146 YSKLLSPEFKQFF--SQYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLR 203
Query: 66 AFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPEL----- 120
+ G +V + + AV++ + PN + EN + Y G L
Sbjct: 204 SHGVTVVEYE--QDYGVAVEEGRKAAQSDPNCF-FIDDENSRTLFLGYSVAGQRLKAQFA 260
Query: 121 ---WKGSGGRIDALVSGIGTGGTITGAGKFLKEK-NPNIKLYGIEPTESPV----LSGGK 172
+ G GG G LK ++ + EPT SP + G
Sbjct: 261 QQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVHTGL 320
Query: 173 PGPHKIQGIGAGFV----------PGVLEVNII----DEVVQVSSDEAIETAKLLALKEG 218
+Q IG + + D +S + LA +EG
Sbjct: 321 HDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGFYTLSDQTMYDMLGWLAQEEG 380
Query: 219 LFVGISSGGAAAAAIEIAKRPE 240
+ + S+ A +
Sbjct: 381 IRLEPSALAGMAGPQRVCASVS 402
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate,
PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Length = 360
Score = 66.9 bits (164), Expect = 7e-13
Identities = 49/249 (19%), Positives = 88/249 (35%), Gaps = 28/249 (11%)
Query: 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKG 79
G+ ++ ++GNT A AA + +P +++ + GA+++ D
Sbjct: 84 GQRAVLCASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQID--GN 141
Query: 80 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIH--YETTGPELWKGSGGRIDALVSGIGT 137
++ A ++ A P ++ N NP +T E+ G D +G
Sbjct: 142 FDDCLELARKMAADFPTISLV----NSVNPVRIEGQKTAAFEIVDVLGTAPDVHALPVGN 197
Query: 138 GGTITGAGKFLKE--------KNPNIKLYGIEPTESPVLSGGKPGPHK---IQGIGAGFV 186
G IT K E K P ++ G + + L G+P H I G
Sbjct: 198 AGNITAYWKGYTEYHQLGLIDKLP--RMLGTQAAGAAPLVLGEPVSHPETIATAIRIGSP 255
Query: 187 P-GVLEVNIIDE----VVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE- 240
V + + S +E + L+A EG+FV +S + A ++
Sbjct: 256 ASWTSAVEAQQQSKGRFLAASDEEILAAYHLVARVEGVFVEPASAASIAGLLKAIDDGWV 315
Query: 241 NAGKLIVVI 249
G +V
Sbjct: 316 ARGSTVVCT 324
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus
thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Length = 351
Score = 66.5 bits (163), Expect = 9e-13
Identities = 48/249 (19%), Positives = 86/249 (34%), Gaps = 29/249 (11%)
Query: 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPAKG 79
G + ++GNT A AA I+ +PA +L + GA +V + G
Sbjct: 76 GAQAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVE---G 132
Query: 80 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIH--YETTGPELWKGSGGRIDALVSGIGT 137
+ + L + ++ N NP +T E+ G +G
Sbjct: 133 NFDDALRLTQKLTEAFPVALV----NSVNPHRLEGQKTLAFEVVDELGDAPHYHALPVGN 188
Query: 138 GGTITGAGKFLKE--------KNPNIKLYGIEPTESPVLSGGKP--GPHKI-QGIGAGFV 186
G IT K + P ++ G + + L G+P P + I G
Sbjct: 189 AGNITAHWMGYKAYHALGKAKRLP--RMLGFQAAGAAPLVLGRPVERPETLATAIRIGNP 246
Query: 187 P-GVLEVNIIDE----VVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE- 240
V +E + V+ +E + + LA +EG+F +S A A ++ +
Sbjct: 247 ASWQGAVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPASAAAMAGVFKLLREGRL 306
Query: 241 NAGKLIVVI 249
+V+
Sbjct: 307 EPESTVVLT 315
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A
{Aquifex aeolicus}
Length = 352
Score = 65.0 bits (159), Expect = 3e-12
Identities = 47/249 (18%), Positives = 86/249 (34%), Gaps = 29/249 (11%)
Query: 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPAKG 79
G+ +I ++GNT A AA R + +P ++ + +GA+++ G
Sbjct: 78 GKRAVICASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQ---G 134
Query: 80 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIH--YETTGPELWKGSGGRIDALVSGIGT 137
+ + ++ N NP +T E+ G D +G
Sbjct: 135 TFDDALNIVRKIGENFPVEIV----NSVNPYRIEGQKTAAFEICDTLGEAPDYHFIPVGN 190
Query: 138 GGTITGAGKFLKE--------KNPNIKLYGIEPTESPVLSGGKPGPHK---IQGIGAGFV 186
G IT K K K P ++ G + + + G P + I G
Sbjct: 191 AGNITAYWKGFKIYYEEGKITKLP--RMMGWQAEGAAPIVKGYPIKNPQTIATAIKIGNP 248
Query: 187 P-GVLEVNIIDE----VVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE- 240
+ E + VS E + KL+A EG+F +S + A I++ +
Sbjct: 249 YSWKSALKAAQESGGKIDAVSDSEILYAYKLIASTEGVFCEPASAASVAGLIKLVREGFF 308
Query: 241 NAGKLIVVI 249
G+++
Sbjct: 309 KGGEVVTCT 317
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP;
1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Length = 346
Score = 64.1 bits (157), Expect = 6e-12
Identities = 51/241 (21%), Positives = 98/241 (40%), Gaps = 34/241 (14%)
Query: 30 SGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEE 89
SGN G L + A + I +P + +++ ++A+GA +V +P+ + A+
Sbjct: 84 SGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPS--DESRENVAKR 141
Query: 90 ILAKTPNAYMLQQFENPANPKIHYE------TTGPELWKGSGGRIDALVSGIGTGGTITG 143
+ +T M+ + P T E+ +DALV +G GG + G
Sbjct: 142 VTEET-EGIMVHPNQEP-------AVIAGQGTIALEVLNQVPL-VDALVVPVGGGGMLAG 192
Query: 144 AGKFLKEKNPNIKLYGIEPTESPV----LSGGKPGPHKIQ------GIGAGFVPGVLEVN 193
+K P++K+Y EP+ + GK P+ G+ + G+
Sbjct: 193 IAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADGVKSS--IGLNTWP 250
Query: 194 II----DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA-GKLIVV 248
II D++ V+ DE +L+ + L + ++G AA + + + K I +
Sbjct: 251 IIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQHFQTVSPEVKNICI 310
Query: 249 I 249
+
Sbjct: 311 V 311
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme,
S-adenosyl-methionine, allostery; 2.25A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Length = 486
Score = 64.0 bits (156), Expect = 8e-12
Identities = 47/300 (15%), Positives = 99/300 (33%), Gaps = 46/300 (15%)
Query: 8 MISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA-SMSLERRIILRA 66
++S + + ++G+T L+ A+ I+ +PA +S+ + + A
Sbjct: 170 LVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIA 229
Query: 67 FGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIH--YETTGPELWKGS 124
GA ++ D K + Y+ N N +T E+ +
Sbjct: 230 NGAFVLSID---TDFDGCMKLIREITAELPIYLA----NSLNSLRLEGQKTAAIEILQQF 282
Query: 125 GGRI-DALVSGIGTGGTITGAGKFLK--------EKNPNIKLYGIEPTE-SPVLSGGKPG 174
++ D ++ G G I K K ++ P ++ + +P+ K G
Sbjct: 283 DWQVPDWVIVPGGNLGNIYAFYKGFKXCQELGLVDRIP--RMVCAQAANANPLYLHYKSG 340
Query: 175 PHKIQ----------GIGAGF-VPGVLEVNIIDE----VVQVSSDEAIETAKLLALKEGL 219
+ I G V V + + V + + +E + A A G+
Sbjct: 341 WKDFKPMTASTTFASAIQIGDPVSIDRAVYALKKCNGIVEEAT-EEELMDAMAQADSTGM 399
Query: 220 FVGISSGGAAAAAIEIAKRPE-NAGKLIVVI-------FPSFGERYLSSVLFESVRKEAE 271
F+ +G A A ++ + VV+ F Y S+ + + + +
Sbjct: 400 FICPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQSKIDYHSNAIPDMACRFSN 459
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III;
dimer, PLP, isomerase; HET: PLP; 1.70A
{Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A*
2zpu_A* 2zr8_A*
Length = 323
Score = 62.5 bits (153), Expect = 2e-11
Identities = 56/268 (20%), Positives = 99/268 (36%), Gaps = 52/268 (19%)
Query: 7 SMISDAE-AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR 65
S +++A+ G++T +SGN +A A I MP + +
Sbjct: 66 SQLNEAQRKAGVLTF--------SSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATK 117
Query: 66 AFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIH-YE---------T 115
+G ++++ D + A+EI + I Y+ T
Sbjct: 118 GYGGQVIMYDRY--KDDREKMAKEISEREGLTI------------IPPYDHPHVLAGQGT 163
Query: 116 TGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV----LSGG 171
EL++ G +DAL +G GG ++G+ + PN ++YG+EP G
Sbjct: 164 AAKELFE-EVGPLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAGNDGQQSFRKG 222
Query: 172 KPGPHKIQ-----GIGAGFVPGVLEVNII----DEVVQVSSDEAIETAKLLALKEGLFV- 221
G G +II D+++ VS +E I+ K A + + V
Sbjct: 223 SIVHIDTPKTIADGAQTQ-HLGNYTFSIIKEKVDDILTVSDEELIDCLKFYAARMKIVVE 281
Query: 222 GISSGGAAAAAIEIAKRPENAGKLIVVI 249
+G + AA A + + K I +I
Sbjct: 282 P--TGCLSFAAA-RAMKEKLKNKRIGII 306
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP:
c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Length = 372
Score = 61.1 bits (149), Expect = 6e-11
Identities = 44/265 (16%), Positives = 89/265 (33%), Gaps = 49/265 (18%)
Query: 7 SMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA 66
+ + ++GN G+ A+ A I +P + L+
Sbjct: 86 KRWAKQGCAHFVCS--------SAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKN 137
Query: 67 FGAELVLT----DPAKGMKGAVQKAEEILAKTPNAYMLQQFENP------ANPKIHYETT 116
GA + D A + A+ + P + F++P A +
Sbjct: 138 EGATCKVVGELLDEAF------ELAKALAKNNPGWVYIPPFDDPLIWEGHA-------SI 184
Query: 117 GPELWKGSGGRIDALVSGIGTGGTITGAGKFLKE-KNPNIKLYGIEPTESPV----LSGG 171
EL + + A+ +G GG + G + L+E ++ + +E + + G
Sbjct: 185 VKELKETLWEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAG 244
Query: 172 K----PGPHKI-QGIGAGFVPGVLEVNII----DEVVQVSSDEAIETAKLLALKEGLFVG 222
K P + + +G G + + +S EA+ + E + V
Sbjct: 245 KLVSLPKITSVAKALGVK-TVGSQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVE 303
Query: 223 ISSGGAAAAAIE--IAKRPENAGKL 245
+ GAA AA+ + ++ + G L
Sbjct: 304 -PACGAALAAVYSHVIQKLQLEGNL 327
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative,
RSGI, structural genomics, lyase; HET: PLP; 2.15A
{Thermus thermophilus} SCOP: c.79.1.1
Length = 311
Score = 60.2 bits (147), Expect = 9e-11
Identities = 52/247 (21%), Positives = 90/247 (36%), Gaps = 44/247 (17%)
Query: 30 SGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEE 89
SGN G+A+ A + ++ MP S ++ RA+GAE+V K + A
Sbjct: 73 SGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGVT--AKNREEVARA 130
Query: 90 ILAKTPNAYMLQQFENPANPKIH-YE---------TTGPELW---KGSGGRIDALVSGIG 136
+ +T A IH ++ T G EL G A+++ +G
Sbjct: 131 LQEETGYAL------------IHPFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPVG 178
Query: 137 TGGTITGAGKFLKEKNPNIKLYGIEPTESPV----LSGGKPGPHKIQ------GIGAGFV 186
GG + G +K +P + G+EP + L G+ + G+
Sbjct: 179 GGGLLAGLATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILRLEAPPRTRADGVRTL-S 237
Query: 187 PGVLEVNII----DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
G I+ D ++ VS + +E +LL + V GA A +
Sbjct: 238 LGERTFPILRERVDGILTVSEEALLEAERLLFTRTKQVV--EPTGALPLAAVLEHGARLP 295
Query: 243 GKLIVVI 249
L +++
Sbjct: 296 QTLALLL 302
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer,
regulation, pyridoxal PHOS isoleucine biosynthesis; HET:
PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2
d.58.18.2
Length = 514
Score = 56.9 bits (138), Expect = 2e-09
Identities = 52/239 (21%), Positives = 85/239 (35%), Gaps = 43/239 (17%)
Query: 36 GLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT----DPAKGMKGAVQKAEEIL 91
G+AF +A + +I MP + + + +R FG E++L D AK KA E L
Sbjct: 93 GVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAK------AKAIE-L 145
Query: 92 AKTPNAYMLQQFENPANPKIHYE------TTGPELWKGSGGRIDALVSGIGTGGTITGAG 145
++ + F++P T EL + +D + +G GG G
Sbjct: 146 SQQQGFTWVPPFDHP-------MVIAGQGTLALELLQ-QDAHLDRVFVPVGGGGLAAGVA 197
Query: 146 KFLKEKNPNIKLYGIEPTESPV----LSGGKPGPHKIQGIGAGFV-------PGVLEVNI 194
+K+ P IK+ +E +S L G P + +G F G +
Sbjct: 198 VLIKQLMPQIKVIAVEAEDSACLKAALDAGH--PVDLPRVGL-FAEGVAVKRIGDETFRL 254
Query: 195 I----DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVI 249
D+++ V SD K L S A A + G+ + I
Sbjct: 255 CQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYIALHNIRGERLAHI 313
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine
deaminase, PLP, threonine DEH L-threonine metabolism;
HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A*
2gn2_A*
Length = 342
Score = 56.0 bits (136), Expect = 3e-09
Identities = 52/263 (19%), Positives = 92/263 (34%), Gaps = 40/263 (15%)
Query: 7 SMISDAE-AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR 65
S +++AE KG++ ++GN G++ A + MP +
Sbjct: 80 SSLTEAEKRKGVVAC--------SAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATC 131
Query: 66 AFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYE------TTGPE 119
+ AE+VL + K E + +T + ++ + T G E
Sbjct: 132 DYSAEVVLHG--DNFNDTIAKVSE-IVETEGRIFIPPYD-------DPKVIAGQGTIGLE 181
Query: 120 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV----LSGGKP-- 173
+ + +D ++ IG GG I G +K NP IK+ G++ G+
Sbjct: 182 IME-DLYDVDNVIVPIGGGGLIAGIAIAIKSINPTIKVIGVQAENVHGMAASYYTGEITT 240
Query: 174 --GPHKI-QGIGAGFVPGVLEVNII----DEVVQVSSDEAIETAKLLALKEGLFVGISSG 226
+ G PG L I+ D++V VS DE + L + + +
Sbjct: 241 HRTTGTLADGC-DVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQRNKVITEGAGA 299
Query: 227 GAAAAAIEIAKRPENAGKLIVVI 249
A AA + + V I
Sbjct: 300 LACAALLSGKLDSHIQNRKTVSI 322
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human
cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo
sapiens}
Length = 318
Score = 55.2 bits (134), Expect = 5e-09
Identities = 55/251 (21%), Positives = 86/251 (34%), Gaps = 48/251 (19%)
Query: 31 GNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT----DPAKGMKGAVQK 86
GN GI A+ A I +P S SL+ L+ GAE+ LT D A +
Sbjct: 63 GNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKVWDEAN------LR 116
Query: 87 AEEILAKTPNAYMLQQFENP------ANPKIHYETTGPELWKGSGGRIDALV-SGIGTGG 139
A+E LAK + F++P A + EL ALV + G G
Sbjct: 117 AQE-LAKRDGWENVPPFDHPLIWKGHA-------SLVQELKAVLRTPPGALVLAVGGGGL 168
Query: 140 TITGAGKFLKEKNPNIKLYGIEPTESPV----LSGGKPGPHKI-----QGIGAGFVPGVL 190
L+ ++ + +E + ++ GK + +GA
Sbjct: 169 LAGVVAGLLEVGWQHVPIIAMETHGAHCFNAAITAGKLVTLPDITSVAKSLGAK-TVAAR 227
Query: 191 EVNII----DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAI--------EIAKR 238
+ + V EA+ + L E + V + GAA AAI +
Sbjct: 228 ALECMQVCKIHSEVVEDTEAVSAVQQLLDDERMLVE-PACGAALAAIYSGLLRRLQAEGC 286
Query: 239 PENAGKLIVVI 249
+ +VVI
Sbjct: 287 LPPSLTSVVVI 297
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis,
defensive PROT jasmonic acid pathway, jasmonic
acid,structural genomics; HET: LLP 15P; 2.35A {Solanum
lycopersicum}
Length = 366
Score = 54.5 bits (132), Expect = 8e-09
Identities = 53/239 (22%), Positives = 83/239 (34%), Gaps = 43/239 (17%)
Query: 36 GLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT----DPAKGMKGAVQKAEEIL 91
G+A I MP + + +RA G ++VL D A+ A E L
Sbjct: 122 GVALAGQRLNCVAKIVMPTTTPQIKIDAVRALGGDVVLYGKTFDEAQ------THALE-L 174
Query: 92 AKTPNAYMLQQFENPANPKIHYE------TTGPELWKGSGGRIDALVSGIGTGGTITGAG 145
++ + F++P T G E+ + I A+ +G GG I G
Sbjct: 175 SEKDGLKYIPPFDDP-------GVIKGQGTIGTEINR-QLKDIHAVFIPVGGGGLIAGVA 226
Query: 146 KFLKEKNPNIKLYGIEPTESPV----LSGGKPGPHKIQGIGAGFVPGV---------LEV 192
F K+ PN K+ G+EP + L G F GV
Sbjct: 227 TFFKQIAPNTKIIGVEPYGAASMTLSLHEGHRVKLSNVDT---FADGVAVALVGEYTFAK 283
Query: 193 --NIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVI 249
+ID +V V++D K + + + S A A A + + + IV I
Sbjct: 284 CQELIDGMVLVANDGISAAIKDVYDEGRNILETSGAVAIAGAAAYCEFYKIKNENIVAI 342
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase;
substrate, PLP, crystal, complex, hydrolase; HET: PLP;
1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A*
1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Length = 338
Score = 44.1 bits (104), Expect = 2e-05
Identities = 25/181 (13%), Positives = 52/181 (28%), Gaps = 23/181 (12%)
Query: 87 AEEILAKTPNAYML-QQFENPANPKIHY---ETTGPELWKGSGGRIDALVSGIGTGGTIT 142
E + A Y + + + + G + D +V TG T
Sbjct: 145 LESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQA 204
Query: 143 GAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI--------GAGFVPGVLEVNI 194
G ++ G+ + +I I G +V +
Sbjct: 205 GMVVGFAADGRADRVIGV-----DASAKPAQTREQITRIARQTAEKVGLERDIMRADVVL 259
Query: 195 IDEVVQ----VSSDEAIETAKLLALKEGLFVG-ISSGGAAAAAIEIAKRPE-NAGKLIVV 248
+ + ++ +E +L A EG+ + G + IE+ + E G ++
Sbjct: 260 DERFAGPEYGLPNEGTLEAIRLCARTEGMLTDPVYEGKSMHGMIEMVRNGEFPEGSRVLY 319
Query: 249 I 249
Sbjct: 320 A 320
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or
tryptophan synthase BET like family, PLP dependent
enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium}
PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A*
4d8u_A* 4d8t_A* 4d92_A* 4d99_A*
Length = 342
Score = 40.8 bits (95), Expect = 3e-04
Identities = 56/269 (20%), Positives = 106/269 (39%), Gaps = 30/269 (11%)
Query: 3 RIGYSMISDAEAKG---LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE 59
R +++DA +G LIT G N A +AA + + +
Sbjct: 67 RKLEFLVADALREGADTLITAGAI------QSNHVRQTAAVAAKLGLHCVALLENPIGTT 120
Query: 60 --------RRIILRAFGAELVLTDPAKGM-KGAVQKAEEILAKTPNAYMLQQFENPANPK 110
R++L F ++ + D A I A+ Y++ + A
Sbjct: 121 AENYLTNGNRLLLDLFNTQIEMCDALTDPDAQLQTLATRIEAQGFRPYVIPVGGSSALGA 180
Query: 111 IHYETTGPELWK--GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVL 168
+ Y + E+ + + ++V G+ GT G L+ P+++L G+ + S
Sbjct: 181 MGYVESALEIAQQCEEVVGLSSVVVASGSAGTHAGLAVGLEHLMPDVELIGVTVSRSV-- 238
Query: 169 SGGKPGPHKIQGIGAGFVPGV--LEVNIIDEVVQ----VSSDEAIETAKLLALKEGLFVG 222
+ KP +Q AG + ++++ D+ V +D +E KLLA EG+ +
Sbjct: 239 AEQKPKVIALQQAIAGQLALTATADIHLWDDYFAPGYGVPNDAGMEAVKLLASLEGVLLD 298
Query: 223 -ISSGGAAAAAIE-IAKRPENAGKLIVVI 249
+ +G A A I+ I+++ N I+ I
Sbjct: 299 PVYTGKAMAGLIDGISQKRFNDDGPILFI 327
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 0.001
Identities = 33/165 (20%), Positives = 52/165 (31%), Gaps = 63/165 (38%)
Query: 144 AGKFLKEKNPNIKLYGI--------EPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVN-- 193
A K+ YG P + GG+ G + I + + E
Sbjct: 1649 ADNHFKDT------YGFSILDIVINNPVNLTIHFGGEKG----KRIRENYSAMIFETIVD 1698
Query: 194 -------IIDEVVQVSSDEAIETAK-LLALKE----GLFVGISSGGAAAAAIEIAK---- 237
I E+ + S+ + K LL+ + L + AA E K
Sbjct: 1699 GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL------MEKAAFEDLKSKGL 1752
Query: 238 RPEN---AGKLIVVIFPSFGERY--LSSVLFESVRKEAESMTFEA 277
P + AG S GE Y L+S+ A+ M+ E+
Sbjct: 1753 IPADATFAGH-------SLGE-YAALASL--------ADVMSIES 1781
Score = 36.6 bits (84), Expect = 0.010
Identities = 43/208 (20%), Positives = 67/208 (32%), Gaps = 70/208 (33%)
Query: 12 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE------RRIILR 65
A+ G TPGE L G TG + A I + S E R+ I
Sbjct: 253 AKLLGF-TPGE--LRSYLKGATGHSQGLVTAV-----AIA--ETDSWESFFVSVRKAITV 302
Query: 66 AF--GAELVLTDPAKGMK-GAVQKAEEILAKTPNAYML-------QQFE------N---P 106
F G P + ++ + E P + ML +Q + N P
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP-SPMLSISNLTQEQVQDYVNKTNSHLP 361
Query: 107 ANPKIHYETTGPELWKGSGGRIDALVSG----IGTG--GTITGAGKFL-KEKNPNIKLYG 159
A ++ I +LV+G + +G ++ G L K K P+ G
Sbjct: 362 AGKQVE---------------I-SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS----G 401
Query: 160 IEPTESPVLSGGKPGPHKIQGIGAGFVP 187
++ + P S K F+P
Sbjct: 402 LDQSRIP-FSERKL------KFSNRFLP 422
Score = 32.3 bits (73), Expect = 0.19
Identities = 34/202 (16%), Positives = 61/202 (30%), Gaps = 87/202 (43%)
Query: 4 IGYSMISDAEAKGLITP---------GE--------SVL-IEPTSGNTGI------GLAF 39
+ + D ++KGLI GE V+ IE + + G+
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIE-----SLVEVVFYRGMTM 1793
Query: 40 MAAAKQ-------YRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQK-AEEIL 91
A + Y +I P ++ +F E A+Q E +
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVAA-------SFSQE------------ALQYVVERVG 1834
Query: 92 AKTPNAYMLQQFENPANPKIHYETTGPELWKGS----GGRIDALVSGIGTGGTITGAGKF 147
+T ++++ N Y + G + AL T+T F
Sbjct: 1835 KRT--GWLVE----IVN----YNV------ENQQYVAAGDLRAL-------DTVTNVLNF 1871
Query: 148 LKEKN-PNIKL---YGIEPTES 165
+K + I+L +E E
Sbjct: 1872 IKLQKIDIIELQKSLSLEEVEG 1893
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.026
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 148 LKEKNPNIKLYGIEPTESPVLS 169
LK+ ++KLY +P L+
Sbjct: 22 LKKLQASLKLY--ADDSAPALA 41
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase,
tryptophan biosynthesis, pyridoxal phosphate; HET: IPL
PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB:
1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B*
2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B*
1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ...
Length = 396
Score = 34.0 bits (79), Expect = 0.046
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 197 EVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV 248
+ V ++ DEA+E K L EG+ + S A A A+++ + +L+VV
Sbjct: 322 DYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVV 373
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 33.6 bits (77), Expect = 0.064
Identities = 26/137 (18%), Positives = 45/137 (32%), Gaps = 12/137 (8%)
Query: 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72
+ + G+ VLI SG G + S ++ +RA G +LV
Sbjct: 213 DRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAV---VSSAQKEAAVRALGCDLV 269
Query: 73 LTDPAKGMKGAVQK-AEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGS------G 125
+ G+ + ++ L + P I +E TG + S G
Sbjct: 270 INRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVTFGLSVIVARRG 329
Query: 126 GRIDALVSGIGTGGTIT 142
G + + G +G T
Sbjct: 330 GTV--VTCGSSSGYLHT 344
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open
twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis
saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*
Length = 341
Score = 32.8 bits (74), Expect = 0.12
Identities = 20/143 (13%), Positives = 40/143 (27%), Gaps = 17/143 (11%)
Query: 119 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKI 178
G + D +V TG T G + + + I + +
Sbjct: 184 NQEVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAI-----DASFTSEKTKEQT 238
Query: 179 QGI------GAGFVPGVLEVNIIDEVVQ----VSSDEAIETAKLLALKEGLFV-GISSGG 227
I G + + V ++ IE + A +EG+ + G
Sbjct: 239 LRIANNTAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCAEQEGVLTDPVYEGK 298
Query: 228 AAAAAIE-IAKRPENAGKLIVVI 249
+ I I + G ++ +
Sbjct: 299 SMQGLIALIKEDYFKPGANVLYV 321
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
2.50A {Thermus thermophilus}
Length = 418
Score = 31.0 bits (71), Expect = 0.34
Identities = 38/159 (23%), Positives = 59/159 (37%), Gaps = 40/159 (25%)
Query: 126 GRI-DALVSGIGTGGTITGA-GKFLKEKNPNIKLYGIEP----TESP----VLSGGKPG- 174
GR+ DAL++ +G G G F KL G+E + + GK G
Sbjct: 243 GRLPDALIAAVGGGSNAIGLFAPFAYLPEGRPKLIGVEAAGEGLSTGRHAASIGAGKRGV 302
Query: 175 ------------------PHKIQGIGAGF-VPGV------LEVNIIDEVVQVSSDEAIET 209
H + AG PGV + E V+ +EA+E
Sbjct: 303 LHGSYMYLLYDHDGQITPAHSVS---AGLDYPGVGPEHSYYADAGVAEYASVTDEEALEG 359
Query: 210 AKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV 248
KLLA EG+ + S A A A ++ + +++V+
Sbjct: 360 FKLLARLEGIIPALESAHAIAYAAKVVPE-MDKDQVVVI 397
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural
genomics/proteomics initiative, structural genomics,
lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP:
c.79.1.1 PDB: 1wdw_B*
Length = 388
Score = 30.2 bits (69), Expect = 0.62
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 197 EVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV 248
E V V+ +EA++ L+ EG+ + S A A A+++AK + ++I+V
Sbjct: 318 EYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEM-SRDEIIIV 368
>1wiw_A Glucose-6-phosphate isomerase like protein; riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.00A {Thermus thermophilus} SCOP: c.80.1.1
Length = 290
Score = 30.0 bits (67), Expect = 0.84
Identities = 12/90 (13%), Positives = 25/90 (27%), Gaps = 11/90 (12%)
Query: 162 PTESPVLSGGKPGPHKIQGIGAGFVPGVLEV--NIIDEVVQVSSDEAIETAKLLALKEGL 219
PV PGPH G G G +L + +E + + + +
Sbjct: 25 VGTGPVPGEAYPGPHAALGYGEGQFAALLSGLPDWGEEGTLFLLEGGYDLGEAAGMA--- 81
Query: 220 FVGISSGGAAAAAIEIAKRPENAGKLIVVI 249
+ + + + G + +
Sbjct: 82 LLAETGRA------RVVRVGFRPGVEVHIP 105
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 30.0 bits (68), Expect = 0.84
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 18 ITPGESVLIEPTSGNTGIGLAF--MAAAKQYRLI-ITMPASMSLERRIILRAFGAELVLT 74
+TPG+ I+ G + +G + + I + E L+ GA V+T
Sbjct: 164 LTPGKDWFIQ-NGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVIT 222
Query: 75 DPAKGMKGAVQKAEEILAK 93
+ + +E + +
Sbjct: 223 EDQNNSREFGPTIKEWIKQ 241
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan
biosynthesis, structural genomics; 2.20A {Mycobacterium
tuberculosis} PDB: 2o2j_A
Length = 422
Score = 29.9 bits (68), Expect = 0.86
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 197 EVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV 248
+ ++ EA++ LL EG+ I S A A A+++ G +IVV
Sbjct: 349 DYRPITDSEAMDAFGLLCRMEGIIPAIESAHAVAGALKLGVE-LGRGAVIVV 399
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 29.8 bits (67), Expect = 0.98
Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 16/134 (11%)
Query: 18 ITPGESVLIEPTSGNTGIGLAFMAAAKQY--RLIITMPASMSLERRIILRAFGAELVLTD 75
+ G++VLI SG G+G A I S ++ I RA GAE ++
Sbjct: 226 MKQGDNVLIWGASG--GLGSYATQFALAGGANPICV---VSSPQKAEICRAMGAEAIIDR 280
Query: 76 PAKGMKGAVQKAEEILAKTPN-AYMLQQFENPANPKIHYETTGPELWKGS------GGRI 128
A+G + + + + +++ + I +E G E + S GG I
Sbjct: 281 NAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRETFGASVFVTRKGGTI 340
Query: 129 DALVSGIGTGGTIT 142
+G
Sbjct: 341 --TTCASTSGYMHE 352
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 28.1 bits (63), Expect = 2.7
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 26/75 (34%)
Query: 29 TSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT--DPAKGMKGAVQK 86
T GN GIGL A + + R F ++VLT D +G AV
Sbjct: 10 TGGNKGIGL---AIVRD-----------------LCRLFSGDVVLTARDVTRGQA-AV-- 46
Query: 87 AEEILAKTPNAYMLQ 101
+++ A+ + Q
Sbjct: 47 -QQLQAEGLSPRFHQ 60
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like
fold, helix-turn-helix, transcription/DNA complex; 2.65A
{Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A
2phg_A 1vol_A*
Length = 207
Score = 27.7 bits (61), Expect = 3.1
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 203 SDEAIETAKLL---ALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVI 249
++ L ++ G ++ A+A + IA R E + I
Sbjct: 22 PRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEI 71
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 27.9 bits (63), Expect = 3.4
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 15 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQY--RLIITMPASMSLERRIILRAFGAELV 72
K + PG+ VL+ G+ +A + AK + R+I T + S ++ +A GA+
Sbjct: 161 KLGVRPGDDVLVMAAGS--GVSVAAIQIAKLFGARVIAT---AGSEDKLRRAKALGADET 215
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics,
PSI, protein STRU initiative; 2.66A {Mycobacterium
tuberculosis} SCOP: c.2.1.1
Length = 198
Score = 27.2 bits (61), Expect = 5.1
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 18 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70
++PGE VLI +G G+G+A ++ AK I A S +R +L G E
Sbjct: 36 LSPGERVLIHSATG--GVGMAAVSIAKMIGARIYTTAG-SDAKREMLSRLGVE 85
>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
Length = 208
Score = 26.9 bits (59), Expect = 6.0
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 126 GRIDALV-SGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESP 166
GR LV G+ TG ++ A + ++ P ++ P SP
Sbjct: 120 GRDVVLVDDGVATGASMEAALSVVFQEGPR-RVVVAVPVASP 160
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB);
hyperthermophIle, ribosome binding, complex (ribosome
binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei}
SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Length = 200
Score = 26.9 bits (59), Expect = 6.7
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 203 SDEAIETAKLL---ALKEGLFVGISSGGAAAAAIEIAKRPEN 241
E A L A+++GL G S AA + A R
Sbjct: 26 PRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLK 67
>3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A,
alternative splicing, hydrolase, phosphoprotein, serine
esterase; 2.00A {Homo sapiens} PDB: 3c5w_P
Length = 316
Score = 26.7 bits (59), Expect = 8.2
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 205 EAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV-IFPSFGERYLSSV 261
+E + +G S GGA A + + L ++ + L+S+
Sbjct: 99 NVVEAMYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCMIDVVEGTAMDALNSM 156
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme,
oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A
{Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Length = 270
Score = 26.7 bits (59), Expect = 8.3
Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 4/30 (13%)
Query: 104 ENPANPKIHY----ETTGPELWKGSGGRID 129
E P K+ Y E WK S G +
Sbjct: 193 EYPDRLKVWYVIDQVKRPEEGWKYSVGFVT 222
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure
initiative, PSI-biolo YORK structural genomics research
consortium; 2.20A {Sinorhizobium meliloti 1021}
Length = 363
Score = 26.8 bits (60), Expect = 8.6
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 15 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQY--RLIITMPASMSLERRIILRAFGAELV 72
KG + G+ V+++ T G+ L + AK +I+T S S E+ A GA+
Sbjct: 184 KGHLRAGDRVVVQGTG---GVALFGLQIAKATGAEVIVT---SSSREKLDRAFALGADHG 237
>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase
rotor, sodium-motive force, cell inner membrane, CF(0),
membrane, transport; HET: F09; 2.35A {Ilyobacter
tartaricus} PDB: 1yce_A*
Length = 89
Score = 25.4 bits (56), Expect = 9.2
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 213 LALKEGLFVGISSGGAAAAAIE-IAKRPENAGKLIVVIFPSFG 254
A+ G+ G+ G AA A+E +A++PE G +I +
Sbjct: 20 TAMIAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQA 62
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 26.6 bits (59), Expect = 9.4
Identities = 9/60 (15%), Positives = 16/60 (26%), Gaps = 6/60 (10%)
Query: 10 SDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQY---RLIITMPASMSLERRIILRA 66
VL+ G IG+ F + Y + +E+ +I
Sbjct: 170 PVWTCDDGTLNCRKVLV---VGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEET 226
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate
aminotransferase; HET: PGU; 1.67A {Thermus thermophilus}
PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Length = 397
Score = 26.8 bits (60), Expect = 9.6
Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 30/78 (38%)
Query: 14 AKGLITPGESVLIE-PT-------------------SGNTGI---GLAFMAAAKQYRLII 50
K + G VL+E P+ +G G L + ++ R +
Sbjct: 108 GKVFLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEEGPDLDALEEVLKRERPRFLY 167
Query: 51 TMP-------ASMSLERR 61
+P L R
Sbjct: 168 LIPSFQNPTGGLTPLPAR 185
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.135 0.377
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,418,902
Number of extensions: 294041
Number of successful extensions: 824
Number of sequences better than 10.0: 1
Number of HSP's gapped: 759
Number of HSP's successfully gapped: 78
Length of query: 277
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 185
Effective length of database: 4,133,061
Effective search space: 764616285
Effective search space used: 764616285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (25.8 bits)