RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 023801
(277 letters)
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 320
Score = 264 bits (674), Expect = 2e-88
Identities = 227/275 (82%), Positives = 252/275 (91%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RIG+SMISDAE KGLI PGESVLIEPTSGNTG+GLAF AAAK Y+LIITMPASMS ERRI
Sbjct: 46 RIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRI 105
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
IL AFG ELVLTDPAKGMKGA+ KAEEILAKTPN YMLQQFENPANPKIHYETTGPE+WK
Sbjct: 106 ILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWK 165
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
G+GG+ID VSGIGTGGTITGAGK+LKE+N N+KLYG+EP ES +LSGGKPGPHKIQGIG
Sbjct: 166 GTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIG 225
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
AGF+P VL V++IDEVVQVSSDE+I+ A+ LALKEGL VGISSG AAAAAI++A+RPENA
Sbjct: 226 AGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENA 285
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFEA 277
GKL V IFPSFGERYLS+VLF++ RKEAE+MTFEA
Sbjct: 286 GKLFVAIFPSFGERYLSTVLFDATRKEAEAMTFEA 320
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermotoga maritima [TaxId: 2336]}
Length = 293
Score = 226 bits (577), Expect = 4e-74
Identities = 134/260 (51%), Positives = 179/260 (68%), Gaps = 6/260 (2%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R MI DAE +GL+ G ++EPTSGN GI +A + A + +R+I+TMP +MS+ERR
Sbjct: 39 RPALFMILDAEKRGLLKNG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRK 95
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
+L+ GAELVLT GMKGAV+KA E +++ A+ML QFENP N H TTGPE+ K
Sbjct: 96 VLKMLGAELVLTPGELGMKGAVEKALE-ISRETGAHMLNQFENPYNVYSHQFTTGPEILK 154
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPN-IKLYGIEPTESPVLSGGKPGPHKIQGI 181
+IDA V+G+GTGGTI+G G+ LK N +K+ +EP +SPVLSGG+PG H IQGI
Sbjct: 155 QMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGI 214
Query: 182 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 241
GAGFVP +L+ ++IDEV+ V +EA E A+ LA KEGL VGISSG AAA+++A++
Sbjct: 215 GAGFVPKILDRSVIDEVITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLG- 273
Query: 242 AGKLIVVIFPSFGERYLSSV 261
+V + P ERYLS +
Sbjct: 274 PDARVVTVAPDHAERYLSIL 293
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine
synthase) {Haemophilus influenzae [TaxId: 727]}
Length = 310
Score = 206 bits (525), Expect = 4e-66
Identities = 147/270 (54%), Positives = 190/270 (70%), Gaps = 9/270 (3%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
CRIG +M+ AE G +T G +++ TSGNTGI LA++AAA+ Y++ +TMP +MSLER+
Sbjct: 42 CRIGANMVWQAEKDGTLTKG-KEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERK 100
Query: 62 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNA-YMLQQFENPANPKIHYETTGPEL 120
+L G LVLT+ AKGMKGA+ KAEEI+A P+ ML+QFENPANP+IH ETTGPE+
Sbjct: 101 RLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEI 160
Query: 121 WKGSGGRIDALVSGIGTGGTITGAGKFLKE-KNPNIKLYGIEPTESPVLSGGKPG----- 174
WK + G++D +V+G+GTGG+ITG + +K I +EP ESPV+S G
Sbjct: 161 WKDTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKP 220
Query: 175 -PHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAI 233
PHKIQGIGAGF+P L+++IID V V SD A+ TA+ L +EG+ GISSG A AAA
Sbjct: 221 GPHKIQGIGAGFIPKNLDLSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAAD 280
Query: 234 EIAKRPENAGKLIVVIFPSFGERYLSSVLF 263
+AK PE A KLIVVI PS ERYLS+ LF
Sbjct: 281 RLAKLPEFADKLIVVILPSASERYLSTALF 310
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermus thermophilus [TaxId: 274]}
Length = 302
Score = 196 bits (498), Expect = 3e-62
Identities = 136/262 (51%), Positives = 188/262 (71%), Gaps = 3/262 (1%)
Query: 3 RIGYSMISDAEAKGLITPG-ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
R + MI DAE +G++ PG V++EPTSGNTGIGLA +AA++ YRLI+TMPA MS ER+
Sbjct: 42 RPAWYMIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERK 101
Query: 62 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 121
+L+AFGAELVLTDP + M A ++A + + A+M QF+NPAN + HYETTGPEL+
Sbjct: 102 RVLKAFGAELVLTDPERRMLAAREEALRL-KEELGAFMPDQFKNPANVRAHYETTGPELY 160
Query: 122 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 181
+ GRIDA V G GTGGTITG G++LKE+ P++K+ +EP S VLSGGK G H QG+
Sbjct: 161 EALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGM 220
Query: 182 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 241
G GF+P L+++++D V+QV ++A A+ LA +EGLF+G+SSGG AA+++A+
Sbjct: 221 GPGFIPENLDLSLLDGVIQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQVARE-LG 279
Query: 242 AGKLIVVIFPSFGERYLSSVLF 263
GK + I P G +YLS+ L+
Sbjct: 280 PGKRVACISPDGGWKYLSTPLY 301
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Salmonella typhimurium [TaxId: 90371]}
Length = 302
Score = 193 bits (490), Expect = 6e-61
Identities = 140/262 (53%), Positives = 192/262 (73%), Gaps = 10/262 (3%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
CRIG +MI DAE +G++ PG L+EPT+GNTGI LA++AAA+ Y+L +TMP +MS+ERR
Sbjct: 42 CRIGANMIWDAEKRGVLKPGV-ELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERR 100
Query: 62 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNA-YMLQQFENPANPKIHYETTGPEL 120
+L+A GA LVLT+ AKGMKGA+QKAEEI+A P +LQQF NPANP+IH +TTGPE+
Sbjct: 101 KLLKALGANLVLTEGAKGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEI 160
Query: 121 WKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLY--GIEPTESPVLSGGK------ 172
W+ + G++D +SG+GTGGT+TG +++K L +EPT+SPV++
Sbjct: 161 WEDTDGQVDVFISGVGTGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIK 220
Query: 173 PGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAA 232
PGPHKIQGIGAGF+PG L++ +ID+VV ++++EAI TA+ L +EG+ GISSG A AAA
Sbjct: 221 PGPHKIQGIGAGFIPGNLDLKLIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAA 280
Query: 233 IEIAKRPENAGKLIVVIFPSFG 254
+++ + K IVVI PS G
Sbjct: 281 LKLQEDESFTNKNIVVILPSSG 302
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 355
Score = 194 bits (493), Expect = 8e-61
Identities = 103/275 (37%), Positives = 156/275 (56%), Gaps = 10/275 (3%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RI MI DAE G + P +IEPTSGNTGIGLA AA + YR II MP MS E+
Sbjct: 79 RISLRMIEDAERDGTLKP-GDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVD 137
Query: 63 ILRAFGAELVLTDPAKGM---KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPE 119
+LRA GAE+V T + V A + + PN+++L Q+ N +NP HY+TT E
Sbjct: 138 VLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADE 197
Query: 120 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGK-----PG 174
+ + G++D LV+ +GTGGTITG + LKEK P ++ G++P S + +
Sbjct: 198 ILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQT 257
Query: 175 PHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIE 234
++++GIG F+P VL+ ++D+ + + +EA A++L +EGL G S+G A A++
Sbjct: 258 TYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVK 317
Query: 235 IAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 269
A+ + G+ VVI P Y++ L + +
Sbjct: 318 AAQELQ-EGQRCVVILPDSVRNYMTKFLSDRWMLQ 351
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine
synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 382
Score = 175 bits (445), Expect = 3e-53
Identities = 60/262 (22%), Positives = 117/262 (44%), Gaps = 15/262 (5%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R +IS + + G S++ + TS N G+ L+ +A YR + +P + ++
Sbjct: 128 RPAVEIISRLSRR--VEKG-SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKL 184
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
+ R GA++++ A + + + +K + QF N AN + H T E++
Sbjct: 185 LPRLLGAQVIVDPEAPSTVHLLPRVMKD-SKNEGFVHVNQFYNDANFEAHMRGTAREIFV 243
Query: 123 ---GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQ 179
G + + +GT G ++ A +L+ +P+I+ ++P + + G + +
Sbjct: 244 QSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGIRRVETGML 303
Query: 180 GIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 239
I ++I + +V+ +EA+E +A +GL +G S G A A + A
Sbjct: 304 WINM--------LDISYTLAEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEG 355
Query: 240 ENAGKLIVVIFPSFGERYLSSV 261
+ VV+ P G +YLS V
Sbjct: 356 DLEPGDYVVVVPDTGFKYLSLV 377
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine
synthase) {Escherichia coli, isoform B (CysM) [TaxId:
562]}
Length = 292
Score = 169 bits (429), Expect = 5e-52
Identities = 111/261 (42%), Positives = 163/261 (62%), Gaps = 11/261 (4%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R SMI +AE +G I PG+ + IE TSGNTGI LA +AA K YR+ + MP +MS ERR
Sbjct: 42 RAALSMIVEAEKRGEIKPGDVL-IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRA 100
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
+RA+GAEL+L +GM+GA + +A +L QF NP NP HY TTGPE+W+
Sbjct: 101 AMRAYGAELILVTKEQGMEGA-RDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQ 159
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
+GGRI VS +GT GTITG +F++E++ + + G++P E + G + P
Sbjct: 160 QTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPT------ 213
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
++PG+ +++DEV+ + +A T + LA++EG+F G+SSGGA A A+ +AK N
Sbjct: 214 -EYLPGIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAK--ANP 270
Query: 243 GKLIVVIFPSFGERYLSSVLF 263
++V I G+RYLS+ +F
Sbjct: 271 DAVVVAIICDRGDRYLSTGVF 291
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli
[TaxId: 562]}
Length = 331
Score = 121 bits (305), Expect = 3e-33
Identities = 54/274 (19%), Positives = 96/274 (35%), Gaps = 26/274 (9%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R Y+M++ + +I ++GN G+AF +A + +I MP + + +
Sbjct: 60 RGAYAMMAGLTEEQ----KAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVD 115
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
+R FG E++L A L++ + F++P I + T
Sbjct: 116 AVRGFGGEVLLHGANFDEAKAKA---IELSQQQGFTWVPPFDHP--MVIAGQGTLALELL 170
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQ--- 179
+D + +G GG G +K+ P IK+ +E +S L H +
Sbjct: 171 QQDAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPR 230
Query: 180 ------GIGAGFVPGV---LEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAA 230
G+ + L +D+++ V SD K L S A A
Sbjct: 231 VGLFAEGVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALA 290
Query: 231 AAIEIAKRPENAGKLIVVIFP-----SFGERYLS 259
+ G+ + I G RY+S
Sbjct: 291 GMKKYIALHNIRGERLAHILSGANVNFHGLRYVS 324
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Pseudomonas sp., strain ACP [TaxId: 306]}
Length = 338
Score = 105 bits (263), Expect = 3e-27
Identities = 41/272 (15%), Positives = 82/272 (30%), Gaps = 27/272 (9%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
R +I +A A+G T V I N +A +AA + ++ ++
Sbjct: 52 TRKLEYLIPEALAQGCDTL---VSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDA 108
Query: 62 IILRAFGAEL----------VLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKI 111
+ R ++ V G + + + A E + +P
Sbjct: 109 VYDRVGNIQMSRILGADVRLVPDGFDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLG 168
Query: 112 HYETTGPELW-----KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESP 166
G G + D +V TG T G ++ G++ + P
Sbjct: 169 GLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVDASAKP 228
Query: 167 VLSGGKPGPHKIQGIGAGFVPG-------VLEVNIIDEVVQVSSDEAIETAKLLALKEGL 219
+ + Q + VL+ + ++ +E +L A EG+
Sbjct: 229 AQTREQITRIARQTAEKVGLERDIMRADVVLDERFAGPEYGLPNEGTLEAIRLCARTEGM 288
Query: 220 FVG-ISSGGAAAAAIEIAKRPE-NAGKLIVVI 249
+ G + IE+ + E G ++
Sbjct: 289 LTDPVYEGKSMHGMIEMVRNGEFPEGSRVLYA 320
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14
(SPCC320.14, SPCC330.15c) {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 318
Score = 104 bits (260), Expect = 5e-27
Identities = 49/259 (18%), Positives = 102/259 (39%), Gaps = 23/259 (8%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R + +S ++ ++ +SGN +A A I MP +
Sbjct: 54 RGALNALSQLNEA----QRKAGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVA 109
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
+ +G ++++ D K + + K +++ ++ +++P + T EL++
Sbjct: 110 ATKGYGGQVIMYDRYKDDREKMAKE---ISEREGLTIIPPYDHP-HVLAGQGTAAKELFE 165
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS------------G 170
G +DAL +G GG ++G+ + PN ++YG+EP
Sbjct: 166 -EVGPLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDT 224
Query: 171 GKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAA 230
K Q G + +D+++ VS +E I+ K A + + V + + A
Sbjct: 225 PKTIADGAQTQHLGNYTFSIIKEKVDDILTVSDEELIDCLKFYAARMKIVVEPTGCLSFA 284
Query: 231 AAIEIAKRPENAGKLIVVI 249
AA + ++ + K I +I
Sbjct: 285 AARAMKEKLK--NKRIGII 301
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 386
Score = 100 bits (250), Expect = 4e-25
Identities = 51/283 (18%), Positives = 100/283 (35%), Gaps = 45/283 (15%)
Query: 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPA---SMSLERRIILRAFGAELVLTDP-AKG 79
++ E +G G+ A A ++ I M A ++ GA ++ + ++
Sbjct: 101 LIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRT 160
Query: 80 MKGAVQKAEEILAKTP------NAYMLQQFENPANPKIHYETTGPEL---WKGSGGRIDA 130
+K A+ +A T ++ P + G E + G++
Sbjct: 161 LKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPD 220
Query: 131 LVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSG--------GKPGP------- 175
++ GG+ + + +KL G+E + SG G+ G
Sbjct: 221 VIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSY 280
Query: 176 ----------------HKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGL 219
+ G G L+ E V V+ +EA++ L+ EG+
Sbjct: 281 FLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGI 340
Query: 220 FVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVL 262
+ S A A A+++AK + ++I+V G++ L VL
Sbjct: 341 IPALESAHAVAYAMKLAKE-MSRDEIIIVNLSGRGDKDLDIVL 382
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 325
Score = 94.4 bits (233), Expect = 4e-23
Identities = 44/255 (17%), Positives = 86/255 (33%), Gaps = 12/255 (4%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R ++ DA +KG + + N A I+ + L+
Sbjct: 56 RKLEYLLGDALSKGADVV---ITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNY 112
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEIL----AKTPNAYMLQQFENPANPKIHYETTGP 118
+L AK ++ AEEI + Y++ + Y
Sbjct: 113 LLDKIMGIETRVYDAKDSFELMKYAEEIAEELKREGRKPYVIPPGGASPIGTLGYVRAVG 172
Query: 119 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKI 178
E+ S + D++V G+GGT+ G L N +I+ GI + K
Sbjct: 173 EIATQSEVKFDSIVVAAGSGGTLAGLSLGLSILNEDIRPVGIAVGRFGEVMTSKLDNLIK 232
Query: 179 QGI---GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVG-ISSGGAAAAAIE 234
+ G + + E + + + +EG+ + + +G A ++
Sbjct: 233 EAAELLGVKVEVRPELYDYSFGEYGKITGEVAQIIRKVGTREGIILDPVYTGKAFYGLVD 292
Query: 235 IAKRPENAGKLIVVI 249
+A++ E G+ I+ I
Sbjct: 293 LARKGE-LGEKILFI 306
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Yeast (Hansenula saturnus) [TaxId: 4906]}
Length = 341
Score = 93.2 bits (230), Expect = 1e-22
Identities = 34/273 (12%), Positives = 72/273 (26%), Gaps = 28/273 (10%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
R ++ D V I N +A +AA + ++ + +
Sbjct: 52 LRKLEYIVPDIVEGDYTHL---VSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEA 108
Query: 62 IILRAFGAELVLTDPAKG-------------MKGAVQKAEEILAKTPNAYMLQQFENPAN 108
+ G M+ + A + L + +
Sbjct: 109 EKDVYNRVGNIELSRIMGADVRVIEDGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEH 168
Query: 109 PKIH-----YETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPT 163
+ G + D +V TG T G + + + I+ +
Sbjct: 169 KYGGLGFVGFADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDAS 228
Query: 164 ES-----PVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEG 218
+ K+ G+ F L+ V ++ IE + A +EG
Sbjct: 229 FTSEKTKEQTLRIANNTAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCAEQEG 288
Query: 219 LFVG-ISSGGAAAAAIEIAKRPE-NAGKLIVVI 249
+ + G + I + K G ++ +
Sbjct: 289 VLTDPVYEGKSMQGLIALIKEDYFKPGANVLYV 321
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus
thermophilus [TaxId: 274]}
Length = 310
Score = 89.7 bits (221), Expect = 2e-21
Identities = 47/262 (17%), Positives = 96/262 (36%), Gaps = 28/262 (10%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R S E L+ +SGN G+A+ A + ++ MP S ++
Sbjct: 52 RGALSKALALE-------NPKGLLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKA 104
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW- 121
RA+GAE+V + V +A + + ++ F++P L
Sbjct: 105 CARAYGAEVVDRGVTAKNREEVARALQ---EETGYALIHPFDDPLVIAGQGTAGLELLAQ 161
Query: 122 -KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESP-------------V 167
G A+++ +G GG + G +K +P + G+EP + +
Sbjct: 162 AGRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILRL 221
Query: 168 LSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 227
+ + ++ + G + +D ++ VS + +E +LL + V +
Sbjct: 222 EAPPRTRADGVRTLSLGERTFPILRERVDGILTVSEEALLEAERLLFTRTKQVVEPTGAL 281
Query: 228 AAAAAIEIAKRPENAGKLIVVI 249
AA +E R + + ++
Sbjct: 282 PLAAVLEHGARL---PQTLALL 300
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 390
Score = 81.1 bits (199), Expect = 4e-18
Identities = 50/292 (17%), Positives = 86/292 (29%), Gaps = 48/292 (16%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---SL 58
A+ G E +G G+ A +A + I M A
Sbjct: 87 TNQVLGQALLAKRMGKSEII----AETGAGQHGVASALASALLGLKCRIYMGAKDVERQS 142
Query: 59 ERRIILRAFGAELVLTDP-AKGMKGAVQKAEEILAKTP------NAYMLQQFENPANPKI 111
+R GAE++ + +K A +A + + P +
Sbjct: 143 PNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVRE 202
Query: 112 HYETTGPEL---WKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVL 168
G E GR+ V GG+ + ++ L G+EP +
Sbjct: 203 FQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFINDTSVGLIGVEPGGHGIE 262
Query: 169 SG--------GKPG-----------------------PHKIQGIGAGFVPGVLEVNIIDE 197
+G G+ G + G L +
Sbjct: 263 TGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRAD 322
Query: 198 VVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVI 249
V ++ DEA+E K L EG+ + S A A A+++ + +L+VV
Sbjct: 323 YVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVN 374
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 477
Score = 73.9 bits (180), Expect = 1e-15
Identities = 37/301 (12%), Positives = 82/301 (27%), Gaps = 32/301 (10%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
++S + + ++G+T L+ A+ I+ +PA+
Sbjct: 156 LGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKI-SMAQ 214
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
+++ + G ++ EI L N + L +
Sbjct: 215 LVQPIANGAFVLSIDTDFDGCMKLIREI--TAELPIYLANSLNSLRLEGQKTAAIEILQQ 272
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKN--------PNIKLYGIEPTESPVLSG---- 170
D ++ G G I K K P + L
Sbjct: 273 FDWQVPDWVIVPGGNLGNIYAFYKGFKMCQELGLVDRIPRMVCAQAANANPLYLHYKSGW 332
Query: 171 ----GKPGPHKIQGIGAGFVPGVLE-----VNIIDEVVQVSSDEAIETAKLLALKEGLFV 221
P ++ + + +V+ +++E + A A G+F+
Sbjct: 333 KDFKPMTASTTFASAIQIGDPVSIDRAVYALKKCNGIVEEATEEELMDAMAQADSTGMFI 392
Query: 222 GISSGGAAAAAIEIAKRPE-NAGKLIVVI-------FPSFGERYLSSVLFESVRKEAESM 273
+G A A ++ + VV+ F Y S+ + + + +
Sbjct: 393 CPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQSKIDYHSNAIPDMACRFSNPP 452
Query: 274 T 274
Sbjct: 453 V 453
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus
[TaxId: 274]}
Length = 351
Score = 72.8 bits (177), Expect = 2e-15
Identities = 38/274 (13%), Positives = 76/274 (27%), Gaps = 24/274 (8%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R +S A G ++GNT A AA I+ +PA ++
Sbjct: 63 RGMTLAVSKAVEGGAQAV-----ACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKV 117
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
++ + + + +T E+
Sbjct: 118 AQSLVHGARIVQVEGNFDDALRLTQKLT----EAFPVALVNSVNPHRLEGQKTLAFEVVD 173
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEK------NPNIKLYGIEPTESPVLSGGKPGPH 176
G +G G IT K ++ G + + L G+P
Sbjct: 174 ELGDAPHYHALPVGNAGNITAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGRPVER 233
Query: 177 K--------IQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228
I + + + V+ +E + + LA +EG+F +S A
Sbjct: 234 PETLATAIRIGNPASWQGAVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPASAAA 293
Query: 229 AAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSSV 261
A ++ + +V+ G + ++
Sbjct: 294 MAGVFKLLREGRLEPESTVVLTLTGHGLKDPATA 327
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 319
Score = 66.4 bits (160), Expect = 3e-13
Identities = 35/266 (13%), Positives = 68/266 (25%), Gaps = 26/266 (9%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R +G + ++GN G+ A+ A I +P +
Sbjct: 40 RGIGHFCKRWAKQGCAH-----FVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIE 94
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
L+ GA + + A+ + P + F++P + H
Sbjct: 95 RLKNEGATCKVVGELLDEAF--ELAKALAKNNPGWVYIPPFDDPLIWEGHASIVKELKET 152
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI------------EPTESPVLSG 170
+S G G + ++ + + + L
Sbjct: 153 LWEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAGKLVSLPK 212
Query: 171 GKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAA 230
+ G L +S EA+ + E + V + G A A
Sbjct: 213 ITSVAKALGVKTVGSQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALA 272
Query: 231 AAI-------EIAKRPENAGKLIVVI 249
A ++ +VVI
Sbjct: 273 AVYSHVIQKLQLEGNLRTPLPSLVVI 298
>d1xvha1 a.8.1.2 (A:3-72) Ebh protein {Staphylococcus aureus [TaxId:
1280]}
Length = 70
Score = 27.4 bits (61), Expect = 0.37
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 83 AVQKAEEILAKTPNAYMLQQ 102
AV AE IL K +
Sbjct: 35 AVSAAETILNKQTGPNTAKT 54
>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo
sapiens), different isozymes [TaxId: 9606]}
Length = 176
Score = 28.0 bits (61), Expect = 0.91
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 6/64 (9%)
Query: 5 GYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIIL 64
GY + + PG + G + A R+I ++ ++
Sbjct: 16 GYGAAVNT---AKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVD---INKDKFARA 69
Query: 65 RAFG 68
+ FG
Sbjct: 70 KEFG 73
>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus
callarias) [TaxId: 8053]}
Length = 175
Score = 26.9 bits (58), Expect = 2.2
Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Query: 16 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72
+ PG + + + +A R+I ++ ++ + FGA
Sbjct: 24 AKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVD---LNPDKFEKAKVFGATDF 77
>d1nbwb_ c.51.3.2 (B:) Glycerol dehydratase reactivase, beta subunit
{Klebsiella pneumoniae [TaxId: 573]}
Length = 113
Score = 26.3 bits (58), Expect = 2.4
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 188 GVLEVNIIDEVVQVS-SDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
G+ E + + + +A L A L VGI + A+ A+ P +A
Sbjct: 24 GLEEQGVPCQTITYDGGGDAAALGALAARSSPLRVGIGLSASGEIALTHAQLPADA 79
>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus
subtilis [TaxId: 1423]}
Length = 167
Score = 26.5 bits (57), Expect = 2.5
Identities = 12/54 (22%), Positives = 20/54 (37%)
Query: 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA 66
E GL SVL+ +G G M + Y ++ + + + L A
Sbjct: 16 EQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGA 69
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS)
{Escherichia coli [TaxId: 562]}
Length = 322
Score = 26.5 bits (57), Expect = 3.5
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 10/43 (23%)
Query: 123 GSGGRIDALVSGIGTGGTITGAG---------KFLKEKNPNIK 156
+GGR D LV +G G G ++ NP K
Sbjct: 280 CAGGRYDGLVEQLG-GRATPAVGFAMGLERLVLLVQAVNPEFK 321
>d2nrka1 d.218.1.14 (A:4-170) Hypothetical protein GrpB
{Enterococcus faecalis [TaxId: 1351]}
Length = 167
Score = 26.1 bits (57), Expect = 4.1
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 177 KIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLF 220
K++ IG+ VP + IID +V V E ++ + + G
Sbjct: 30 KVEHIGSTSVPNLAAKPIIDFLVIVEEIEKVDLLQWEFERIGYE 73
>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus
musculus), class II [TaxId: 10090]}
Length = 174
Score = 25.7 bits (55), Expect = 5.6
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 15 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFG 68
+TPG + + G +GL+ + K + ++ E+ +A G
Sbjct: 23 TAKVTPGSTCAV---FGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALG 73
>d1wiwa_ c.80.1.1 (A:) Glucose-6-phosphate isomerase-like protein
TTHA1346 {Thermus thermophilus [TaxId: 274]}
Length = 284
Score = 26.0 bits (57), Expect = 5.8
Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 8/84 (9%)
Query: 163 TESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGL-FV 221
PV PGPH G G G +L + + + + +E L G+ +
Sbjct: 26 GTGPVPGEAYPGPHAALGYGEGQFAALLSG--LPDWGEEGTLFLLEGGYDLGEAAGMALL 83
Query: 222 GISSGG-----AAAAAIEIAKRPE 240
+ +E+ P
Sbjct: 84 AETGRARVVRVGFRPGVEVHIPPS 107
>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus
caballus) [TaxId: 9796]}
Length = 176
Score = 25.0 bits (53), Expect = 8.3
Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 15 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFG 68
+T G + + G + AA R+I ++ ++ + G
Sbjct: 23 VAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVD---INKDKFAKAKEVG 73
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.135 0.377
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,021,560
Number of extensions: 49776
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 37
Length of query: 277
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 193
Effective length of database: 1,254,276
Effective search space: 242075268
Effective search space used: 242075268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (23.9 bits)