BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>023802
MSVSIELLSTKNPNPNPRLSFGSEALYGSPCMRVQSRAQRVSIAPRAKVAAKGIGVGFQL
PERRRSSFYRSTVVFSASHEESSSEESSEIKASAKESEEAWKQTLAAFREQAIKMQSVSQ
EAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEVKEI
VETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLAL
SIASLRSHKKGKTSPVALKGQAGQRVVYFTIEITKKY

High Scoring Gene Products

Symbol, full name Information P value
AT2G38550 protein from Arabidopsis thaliana 1.3e-52
AT3G57280 protein from Arabidopsis thaliana 7.8e-10
AT1G50740 protein from Arabidopsis thaliana 3.9e-06
AT3G20510 protein from Arabidopsis thaliana 3.9e-06

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  023802
        (277 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2064206 - symbol:AT2G38550 "AT2G38550" species...   545  1.3e-52   1
TAIR|locus:2082578 - symbol:AT3G57280 "AT3G57280" species...   154  7.8e-10   1
TAIR|locus:2033177 - symbol:AT1G50740 "AT1G50740" species...   111  3.9e-06   1
TAIR|locus:2085780 - symbol:AT3G20510 species:3702 "Arabi...   111  3.9e-06   1


>TAIR|locus:2064206 [details] [associations]
            symbol:AT2G38550 "AT2G38550" species:3702 "Arabidopsis
            thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0016020 "membrane"
            evidence=IEA] [GO:0009706 "chloroplast inner membrane"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009536 "plastid"
            evidence=IDA] InterPro:IPR005349 Pfam:PF03647 GO:GO:0016021
            GO:GO:0005739 EMBL:CP002685 GO:GO:0009706 EMBL:AC005499
            PANTHER:PTHR12668 EMBL:AY035020 EMBL:AY133772 IPI:IPI00538421
            PIR:D84806 RefSeq:NP_565892.1 UniGene:At.13129 STRING:Q9ZVH7
            PRIDE:Q9ZVH7 EnsemblPlants:AT2G38550.1 GeneID:818437
            KEGG:ath:AT2G38550 TAIR:At2g38550 HOGENOM:HOG000070690
            InParanoid:Q9ZVH7 OMA:HVGIPYG PhylomeDB:Q9ZVH7
            ProtClustDB:CLSN2688787 ArrayExpress:Q9ZVH7 Genevestigator:Q9ZVH7
            Uniprot:Q9ZVH7
        Length = 335

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 131/283 (46%), Positives = 171/283 (60%)

Query:     1 MSVSIELLSTKNPNPNPRLSFGSEA---LYGSPCMRVQSRAQRVSIAPRAKVAAKGIGVG 57
             MS+ +EL+S +NPN        S     L   P   + SR  R   APRA V+  GI  G
Sbjct:     2 MSIPMELMSIRNPNSTLLYRAHSRPPVKLCAPPRSLLPSR--RHFSAPRAVVSYPGIRFG 59

Query:    58 FQLPERRRSSFYRSTVVFXXXXXXXXXXXXXXXXXXXX------XXXXXWKQTLAAFREQ 111
             F  PE   +   RS V F                               WKQTL +F+EQ
Sbjct:    60 FTSPEVLLN---RSVVAFAASHEDSGESGVEVGKEKSDIDVEDDTSKEAWKQTLESFKEQ 116

Query:   112 AIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEAT 171
               KMQSVS EAY + S++A  +LKET+EQL+I+AEKA+++L   AK +SE+G++Y+ +A 
Sbjct:   117 VSKMQSVSSEAYSVNSQKAMTVLKETSEQLRIQAEKAKEELGTKAKVVSEEGREYILKAA 176

Query:   172 ENNP-EVKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFG 230
             E +P +VKEIVE F   TED+K  S   DF++GIPYGLLL +GGFI+FMV+GSIPAIRFG
Sbjct:   177 EESPSDVKEIVEAFA-STEDLKNVSRANDFHVGIPYGLLLLVGGFINFMVSGSIPAIRFG 235

Query:   231 VILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEI 273
             VILGG L ALS+ASL+SH+KG++S   LKGQ     + F  E+
Sbjct:   236 VILGGALFALSLASLKSHRKGESSTKFLKGQMAIVAIIFLREL 278


>TAIR|locus:2082578 [details] [associations]
            symbol:AT3G57280 "AT3G57280" species:3702 "Arabidopsis
            thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0016020 "membrane"
            evidence=IEA] [GO:0009706 "chloroplast inner membrane"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009627 "systemic acquired resistance" evidence=RCA]
            [GO:0034976 "response to endoplasmic reticulum stress"
            evidence=RCA] [GO:0009536 "plastid" evidence=IDA]
            InterPro:IPR005349 Pfam:PF03647 GO:GO:0016021 EMBL:CP002686
            GO:GO:0009706 PANTHER:PTHR12668 EMBL:AY039525 EMBL:AY052733
            EMBL:AY085316 IPI:IPI00517800 RefSeq:NP_567046.1 UniGene:At.909
            IntAct:Q93V66 STRING:Q93V66 PaxDb:Q93V66 PRIDE:Q93V66
            EnsemblPlants:AT3G57280.1 GeneID:824895 KEGG:ath:AT3G57280
            TAIR:At3g57280 eggNOG:NOG268641 HOGENOM:HOG000070593
            InParanoid:Q93V66 OMA:CFGIPYG PhylomeDB:Q93V66
            ProtClustDB:CLSN2689203 Genevestigator:Q93V66 Uniprot:Q93V66
        Length = 226

 Score = 154 (59.3 bits), Expect = 7.8e-10, P = 7.8e-10
 Identities = 51/157 (32%), Positives = 75/157 (47%)

Query:   113 IKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATE 172
             I+ QS   ++ +  S    A L  TAE  K   EK  K  + V +  +   K+ +TE  E
Sbjct:    30 IRPQSFVVKSVDGNSSETPASLSYTAEVSKPVVEKTSKPYSTVDETATN--KESITEPVE 87

Query:   173 NNPEVKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVI 232
                      +  T P    K    + DF  GIPYG L+  GG + F  + ++ ++  GV+
Sbjct:    88 E--------DVATQPIRAAK----IHDFCFGIPYGGLVVSGGLLGFAFSRNLTSLSTGVL 135

Query:   233 LGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYF 269
              GG LLALS  SL+  ++GK+S   + GQA    V F
Sbjct:   136 YGGGLLALSTLSLKIWREGKSSFPYILGQAVLSAVVF 172


>TAIR|locus:2033177 [details] [associations]
            symbol:AT1G50740 "AT1G50740" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0006612 "protein targeting to membrane"
            evidence=RCA] [GO:0009963 "positive regulation of flavonoid
            biosynthetic process" evidence=RCA] [GO:0010200 "response to
            chitin" evidence=RCA] [GO:0010363 "regulation of plant-type
            hypersensitive response" evidence=RCA] [GO:0030968 "endoplasmic
            reticulum unfolded protein response" evidence=RCA] [GO:0050832
            "defense response to fungus" evidence=RCA] InterPro:IPR005349
            Pfam:PF03647 GO:GO:0016021 EMBL:CP002684 GenomeReviews:CT485782_GR
            HOGENOM:HOG000211932 PANTHER:PTHR12668 OMA:WIGFAYA EMBL:AC079027
            EMBL:AY074495 EMBL:AY096728 EMBL:AY087361 IPI:IPI00518839
            PIR:C96544 RefSeq:NP_564579.1 UniGene:At.43937 STRING:Q9C6T7
            EnsemblPlants:AT1G50740.1 GeneID:841496 KEGG:ath:AT1G50740
            TAIR:At1g50740 eggNOG:NOG275159 InParanoid:Q9C6T7 PhylomeDB:Q9C6T7
            ProtClustDB:CLSN2685039 ArrayExpress:Q9C6T7 Genevestigator:Q9C6T7
            Uniprot:Q9C6T7
        Length = 119

 Score = 111 (44.1 bits), Expect = 3.9e-06, P = 3.9e-06
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query:   197 LRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPV 256
             + DF   IPYG+LL +GGFI ++  GSI ++  G   G  ++     SL++ +K KTS +
Sbjct:     1 MHDFCFTIPYGILLIVGGFIGYLKKGSIASLAGGAGTGLLVVLAGFISLKAFEKKKTSLL 60

Query:   257 A 257
             A
Sbjct:    61 A 61


>TAIR|locus:2085780 [details] [associations]
            symbol:AT3G20510 species:3702 "Arabidopsis thaliana"
            [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0016020 "membrane"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR005349 Pfam:PF03647
            GO:GO:0016021 GO:GO:0005634 GO:GO:0005737 EMBL:CP002686
            GenomeReviews:BA000014_GR EMBL:AP000410 HOGENOM:HOG000211932
            PANTHER:PTHR12668 eggNOG:NOG240787 OMA:YISLKAF
            ProtClustDB:CLSN2685039 EMBL:BT010505 EMBL:AK176567 EMBL:AK176851
            IPI:IPI00541215 RefSeq:NP_188687.1 UniGene:At.43873 IntAct:Q9LJU6
            STRING:Q9LJU6 PaxDb:Q9LJU6 PRIDE:Q9LJU6 EnsemblPlants:AT3G20510.1
            GeneID:821597 KEGG:ath:AT3G20510 TAIR:At3g20510 InParanoid:Q9LJU6
            PhylomeDB:Q9LJU6 Genevestigator:Q9LJU6 Uniprot:Q9LJU6
        Length = 119

 Score = 111 (44.1 bits), Expect = 3.9e-06, P = 3.9e-06
 Identities = 25/62 (40%), Positives = 35/62 (56%)

Query:   197 LRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPV 256
             + DF   IPYG+LL  GGFI +M  GSI +   G   G  L+     SL++ +K K S +
Sbjct:     1 MHDFCFTIPYGMLLIGGGFIGYMKKGSITSFAGGAGTGLLLILAGYISLKAFEKKKNSTI 60

Query:   257 AL 258
             A+
Sbjct:    61 AM 62


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.132   0.362    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      277       252   0.00082  114 3  11 22  0.46    33
                                                     32  0.47    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  565 (60 KB)
  Total size of DFA:  142 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.16u 0.11s 25.27t   Elapsed:  00:00:01
  Total cpu time:  25.17u 0.11s 25.28t   Elapsed:  00:00:01
  Start:  Tue May 21 00:48:22 2013   End:  Tue May 21 00:48:23 2013

Back to top