BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023802
(277 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P61876|DPOL_PYRWO DNA polymerase OS=Pyrococcus woesei GN=pol PE=1 SV=1
Length = 775
Score = 35.4 bits (80), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 85 EESSEIKASAKESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIE 144
EE +IK KE+++ ++ L +R++AIK+ + S Y Y+K A KE AE +
Sbjct: 459 EERQKIKTKMKETQDPIEKILLDYRQKAIKLLANSFYGYYGYAK-ARWYCKECAESV--- 514
Query: 145 AEKARKDLTVVAKELSE 161
RK + +V KEL E
Sbjct: 515 TAWGRKYIELVWKELEE 531
>sp|P61875|DPOL_PYRFU DNA polymerase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638
/ JCM 8422 / Vc1) GN=pol PE=1 SV=1
Length = 775
Score = 35.4 bits (80), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 85 EESSEIKASAKESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIE 144
EE +IK KE+++ ++ L +R++AIK+ + S Y Y+K A KE AE +
Sbjct: 459 EERQKIKTKMKETQDPIEKILLDYRQKAIKLLANSFYGYYGYAK-ARWYCKECAESV--- 514
Query: 145 AEKARKDLTVVAKELSE 161
RK + +V KEL E
Sbjct: 515 TAWGRKYIELVWKELEE 531
>sp|Q5QXH7|FADB_IDILO Fatty acid oxidation complex subunit alpha OS=Idiomarina loihiensis
(strain ATCC BAA-735 / DSM 15497 / L2-TR) GN=fadB PE=3
SV=1
Length = 718
Score = 35.0 bits (79), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 115 MQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKK---YLTEAT 171
M+ + Q+A ++ K A ILK+ E+ K+ EK K L+ + L D K + EA
Sbjct: 341 MKDIKQDALDLGMKEAGKILKKGVERGKVNNEKMIKILSSITPTLLNDAVKDVDIVVEAV 400
Query: 172 ENNPEVK 178
NP+VK
Sbjct: 401 VENPKVK 407
>sp|E0W3E3|SNMP1_PEDHC Sensory neuron membrane protein 1 OS=Pediculus humanus subsp.
corporis GN=PHUM603690 PE=3 SV=1
Length = 518
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 26/158 (16%)
Query: 106 AAFREQAIKMQSVSQEAYEIYSKRATAILKE---TAEQLKIEAEKARKDLTVVAKELSED 162
A +++A +++VS+ ++ +IL + T E LK++ ++ KD T V K + +
Sbjct: 199 AVLKKEAPFLETVSRSVFKF------SILNQKNGTEEPLKLQIKRGIKDYTEVGKVIGAN 252
Query: 163 GKKYLTEATENNPEVKEIVETFTLPTEDVKEFSTLRDFYL----GIPYGLLLTLGGFISF 218
GK LT E + P+ D+ E + F L IP F+
Sbjct: 253 GKNKLTNWRGRPCNNLEGTDGTIFPS-DISEHQDIWSFNLELCRSIP-------AKFVRK 304
Query: 219 MVTGSIPAIRFGVILGGT-----LLALSIASLRSHKKG 251
IPA R+ V +G T L L I KKG
Sbjct: 305 SEYKGIPAFRYNVTIGDTSTDPSLKCLCINDTFCWKKG 342
>sp|Q6G5T6|ARGJ_BARHE Arginine biosynthesis bifunctional protein ArgJ OS=Bartonella
henselae (strain ATCC 49882 / Houston 1) GN=argJ PE=3
SV=1
Length = 410
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 96 ESEEAWKQTLAAF---REQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDL 152
+S+ + TL F +E + S + YE++SK+ A+L E A Q+ + E AR +
Sbjct: 229 DSDTSTSDTLMMFATGKESFPCITSKTDPRYEVFSKQLRALLHELALQVVCDGEGARHLI 288
Query: 153 TV-VAKELSEDGKKYLTEATENNPEVK 178
V V +++ K + + N+P VK
Sbjct: 289 EVHVIGATTDNTAKIIALSIANSPLVK 315
>sp|B7ZUL2|LIMD1_XENTR LIM domain-containing protein 1 OS=Xenopus tropicalis GN=limd1 PE=2
SV=1
Length = 593
Score = 32.0 bits (71), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 136 ETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEVKEIVETF 184
+T E+L +EA K +DLT+ E S+DG + + NNPE +E F
Sbjct: 2 DTYEELSLEASKFIQDLTLY--EASKDGLFRVDKGASNNPEFEETKRIF 48
>sp|O94641|HS104_SCHPO Heat shock protein 104 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=hsp104 PE=3 SV=1
Length = 905
Score = 31.6 bits (70), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 89 EIKASAKESEEAWKQTLAAFREQAIKMQSVS---QEAYEIYSKRATAI--LKETAEQLKI 143
EI+A +E +EA K+ L A R++A +++ + +E YE+ R + + K ++LK
Sbjct: 429 EIRALEREKDEASKERLKAARKEAEQVEEETRPIREKYELEKSRGSELQDAKRRLDELKA 488
Query: 144 EAEKA--RKDLTVVA 156
+AE A R D T+ A
Sbjct: 489 KAEDAERRNDFTLAA 503
>sp|Q9ZB35|RBL_HYDPS Ribulose bisphosphate carboxylase large chain OS=Hydrogenophaga
pseudoflava GN=cbbL PE=1 SV=3
Length = 473
Score = 31.2 bits (69), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 5/49 (10%)
Query: 137 TAEQLKIEAE-KARKDLTVVAKELSEDGKKYLTEATENNPEVKEIVETF 184
TA ++++EA KAR + V KE GK LTEA ++PE+K +ET+
Sbjct: 411 TANRVELEACVKARNEGIAVEKE----GKAVLTEAANDSPELKIAMETW 455
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.342
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,842,401
Number of Sequences: 539616
Number of extensions: 3459581
Number of successful extensions: 15564
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 299
Number of HSP's that attempted gapping in prelim test: 15246
Number of HSP's gapped (non-prelim): 571
length of query: 277
length of database: 191,569,459
effective HSP length: 116
effective length of query: 161
effective length of database: 128,974,003
effective search space: 20764814483
effective search space used: 20764814483
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)