Query 023802
Match_columns 277
No_of_seqs 112 out of 147
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 06:46:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023802.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023802hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4267 Predicted membrane pro 99.9 1.4E-22 3E-27 166.2 5.5 77 197-276 1-79 (110)
2 PF03647 Tmemb_14: Transmembra 99.6 5.4E-17 1.2E-21 128.2 -0.4 74 200-275 1-74 (96)
3 COG5548 Small integral membran 98.7 4E-08 8.7E-13 80.5 6.8 69 203-275 7-77 (105)
4 PF06570 DUF1129: Protein of u 93.4 2.4 5.1E-05 37.2 12.6 25 197-221 75-105 (206)
5 PRK05771 V-type ATP synthase s 88.4 6.5 0.00014 40.0 11.7 71 166-236 315-413 (646)
6 PRK06569 F0F1 ATP synthase sub 86.3 7.2 0.00016 34.2 9.3 68 108-175 56-123 (155)
7 PRK10884 SH3 domain-containing 83.1 14 0.00031 33.4 10.1 22 134-155 137-158 (206)
8 PF06738 DUF1212: Protein of u 82.2 9 0.0002 32.5 8.0 55 213-270 114-168 (193)
9 PF05478 Prominin: Prominin; 81.2 11 0.00025 39.6 9.9 41 110-150 320-360 (806)
10 PF04156 IncA: IncA protein; 80.5 3.8 8.3E-05 34.8 5.2 43 203-245 11-60 (191)
11 PF11833 DUF3353: Protein of u 79.9 16 0.00034 32.8 9.1 34 91-125 3-36 (194)
12 PRK09174 F0F1 ATP synthase sub 73.3 44 0.00094 30.0 10.1 75 88-162 97-179 (204)
13 PF11947 DUF3464: Protein of u 73.3 6.8 0.00015 34.5 4.8 54 199-252 66-126 (153)
14 PF05957 DUF883: Bacterial pro 73.2 41 0.00089 26.0 9.8 52 98-149 4-55 (94)
15 PF12732 YtxH: YtxH-like prote 72.5 11 0.00023 28.3 5.1 7 141-147 53-59 (74)
16 PF15556 Zwint: ZW10 interacto 70.7 68 0.0015 30.4 10.9 68 94-161 61-148 (252)
17 CHL00118 atpG ATP synthase CF0 70.3 65 0.0014 27.2 10.1 73 89-161 67-147 (156)
18 PRK09174 F0F1 ATP synthase sub 69.7 51 0.0011 29.6 9.7 74 109-182 100-174 (204)
19 PRK13454 F0F1 ATP synthase sub 68.5 70 0.0015 27.9 10.1 78 88-165 75-160 (181)
20 PF05957 DUF883: Bacterial pro 68.5 53 0.0012 25.4 12.1 8 103-110 5-12 (94)
21 PF15099 PIRT: Phosphoinositid 66.0 9.4 0.0002 33.1 4.1 61 175-241 30-98 (129)
22 PF07155 ECF-ribofla_trS: ECF- 64.6 48 0.001 27.5 8.0 53 200-252 47-101 (169)
23 TIGR03017 EpsF chain length de 64.2 45 0.00098 31.7 8.7 51 140-196 346-396 (444)
24 PRK08476 F0F1 ATP synthase sub 64.1 86 0.0019 26.3 9.8 65 88-155 51-115 (141)
25 PF15508 NAAA-beta: beta subun 64.0 53 0.0011 25.7 7.7 30 96-128 13-42 (95)
26 PF13807 GNVR: G-rich domain o 63.9 21 0.00045 27.0 5.2 51 140-196 8-58 (82)
27 TIGR03818 MotA1 flagellar moto 63.1 66 0.0014 30.4 9.4 76 166-243 129-212 (282)
28 PF04391 DUF533: Protein of un 62.9 17 0.00037 32.6 5.3 41 212-252 12-56 (188)
29 PRK09430 djlA Dna-J like membr 62.8 7.7 0.00017 35.9 3.2 25 211-236 7-31 (267)
30 PF04286 DUF445: Protein of un 62.1 1.2E+02 0.0027 27.3 10.8 20 164-183 300-320 (367)
31 PRK13895 conjugal transfer pro 61.7 72 0.0016 28.3 8.7 39 95-137 38-77 (144)
32 PRK06926 flagellar motor prote 61.5 43 0.00092 31.7 7.9 107 135-244 80-198 (271)
33 PRK14475 F0F1 ATP synthase sub 61.3 1E+02 0.0022 26.2 10.1 75 88-162 54-136 (167)
34 PRK14471 F0F1 ATP synthase sub 61.0 1E+02 0.0022 26.0 10.1 74 88-161 52-133 (164)
35 PRK15374 pathogenicity island 59.9 96 0.0021 32.8 10.6 74 125-224 266-339 (593)
36 PF03729 DUF308: Short repeat 59.4 57 0.0012 22.7 7.6 63 207-270 3-68 (72)
37 PRK06568 F0F1 ATP synthase sub 58.0 1.2E+02 0.0026 26.5 9.5 39 129-167 71-109 (154)
38 PF05884 ZYG-11_interact: Inte 57.9 1.9E+02 0.0042 28.3 14.4 68 150-233 68-135 (299)
39 PRK13717 conjugal transfer pro 57.5 30 0.00065 30.0 5.6 41 101-142 52-92 (128)
40 COG1184 GCD2 Translation initi 57.3 50 0.0011 32.0 7.7 57 130-188 87-143 (301)
41 cd02432 Nodulin-21_like_1 Nodu 55.6 93 0.002 28.2 8.8 39 217-257 157-196 (218)
42 PRK12482 flagellar motor prote 55.5 1.2E+02 0.0026 29.1 9.8 70 174-244 139-213 (287)
43 PRK13454 F0F1 ATP synthase sub 55.5 1.4E+02 0.0031 26.0 9.7 38 89-126 66-103 (181)
44 TIGR00659 conserved hypothetic 54.8 36 0.00077 31.6 6.1 78 197-274 1-81 (226)
45 PF12822 DUF3816: Protein of u 54.0 49 0.0011 27.1 6.2 23 199-221 39-62 (172)
46 PF12597 DUF3767: Protein of u 53.2 28 0.0006 29.2 4.7 22 174-197 16-37 (118)
47 PF11657 Activator-TraM: Trans 52.7 1.4E+02 0.003 26.2 9.0 60 96-161 39-98 (144)
48 PF13767 DUF4168: Domain of un 52.3 1E+02 0.0022 23.3 7.7 26 103-128 4-29 (78)
49 TIGR02744 TrbI_Ftype type-F co 52.1 45 0.00098 28.2 5.7 41 101-142 39-79 (112)
50 PF14007 YtpI: YtpI-like prote 52.0 61 0.0013 26.3 6.3 47 202-248 35-84 (89)
51 PF01102 Glycophorin_A: Glycop 51.6 22 0.00047 30.3 3.8 42 192-253 53-94 (122)
52 PF13858 DUF4199: Protein of u 51.4 81 0.0017 25.9 7.1 49 202-250 2-54 (163)
53 TIGR01144 ATP_synt_b ATP synth 51.4 1.3E+02 0.0029 24.5 11.3 74 88-161 39-120 (147)
54 PF00957 Synaptobrevin: Synapt 51.1 17 0.00037 27.7 2.9 25 189-213 55-79 (89)
55 PF12291 DUF3623: Protein of u 51.1 96 0.0021 29.6 8.4 58 197-254 1-61 (259)
56 PF14362 DUF4407: Domain of un 50.6 1.1E+02 0.0024 28.1 8.6 37 204-240 16-62 (301)
57 PF05529 Bap31: B-cell recepto 50.5 1E+02 0.0022 26.6 7.9 35 132-166 157-191 (192)
58 PF11190 DUF2976: Protein of u 49.9 62 0.0013 26.2 6.0 29 240-268 45-73 (87)
59 PF04420 CHD5: CHD5-like prote 49.5 35 0.00076 29.4 4.9 52 97-162 41-92 (161)
60 PRK13453 F0F1 ATP synthase sub 48.3 1.8E+02 0.0039 25.0 11.5 74 88-161 62-143 (173)
61 PF02535 Zip: ZIP Zinc transpo 48.1 1.2E+02 0.0026 27.0 8.2 57 196-252 229-294 (317)
62 KOG2580 Mitochondrial import i 48.1 66 0.0014 33.1 7.1 53 89-142 71-131 (459)
63 PF03302 VSP: Giardia variant- 47.9 9.7 0.00021 37.1 1.4 21 200-220 368-388 (397)
64 COG3247 HdeD Uncharacterized c 47.7 1.8E+02 0.0038 26.4 9.2 69 199-270 74-146 (185)
65 PF09925 DUF2157: Predicted me 46.7 1.6E+02 0.0035 24.4 8.3 13 207-219 40-52 (145)
66 cd02434 Nodulin-21_like_3 Nodu 46.7 2.3E+02 0.0049 25.8 11.0 28 226-255 171-200 (225)
67 PF03203 MerC: MerC mercury re 46.6 1.4E+02 0.0029 24.2 7.6 9 248-256 59-67 (116)
68 PF12751 Vac7: Vacuolar segreg 45.7 11 0.00024 37.6 1.5 28 198-225 302-329 (387)
69 TIGR02762 TraL_TIGR type IV co 44.5 66 0.0014 25.7 5.4 42 208-254 24-65 (95)
70 TIGR00984 3a0801s03tim44 mitoc 44.4 1.1E+02 0.0024 30.5 8.0 50 100-149 12-73 (378)
71 PF04888 SseC: Secretion syste 44.1 1.6E+02 0.0035 27.1 8.6 20 223-242 78-97 (306)
72 PRK13428 F0F1 ATP synthase sub 43.8 3.4E+02 0.0075 27.0 12.0 66 88-153 45-118 (445)
73 PRK10255 PTS system N-acetyl g 43.5 52 0.0011 34.8 5.9 51 200-250 56-117 (648)
74 PRK09110 flagellar motor prote 43.5 1.2E+02 0.0026 28.8 7.8 67 165-231 128-202 (283)
75 PRK14473 F0F1 ATP synthase sub 42.7 2E+02 0.0044 24.1 10.1 73 88-160 52-132 (164)
76 PF10310 DUF2413: Protein of u 42.6 84 0.0018 31.9 7.0 36 174-210 186-223 (444)
77 PRK13455 F0F1 ATP synthase sub 41.6 2.3E+02 0.005 24.4 9.5 74 88-161 71-152 (184)
78 PF05283 MGC-24: Multi-glycosy 41.5 29 0.00063 31.4 3.3 28 223-250 159-186 (186)
79 KOG3758 Uncharacterized conser 41.2 1.2E+02 0.0026 32.5 8.1 94 100-202 75-174 (655)
80 cd01020 TroA_b Metal binding p 40.5 2.5E+02 0.0054 25.3 9.1 91 96-186 99-204 (264)
81 PRK08124 flagellar motor prote 40.3 1.3E+02 0.0027 28.1 7.3 68 174-243 121-193 (263)
82 KOG3759 Uncharacterized RUN do 39.7 1.1E+02 0.0025 32.1 7.4 57 99-158 145-224 (621)
83 PF05461 ApoL: Apolipoprotein 39.2 67 0.0014 30.9 5.5 22 222-243 126-147 (313)
84 TIGR00464 gltX_bact glutamyl-t 38.9 2.1E+02 0.0045 28.8 9.0 87 100-186 344-456 (470)
85 PF01706 FliG_C: FliG C-termin 38.7 89 0.0019 24.8 5.4 52 113-164 47-106 (110)
86 TIGR01005 eps_transp_fam exopo 38.4 4.3E+02 0.0093 27.4 11.4 34 179-213 414-447 (754)
87 PTZ00236 mitochondrial import 38.1 1.9E+02 0.0042 25.8 7.8 74 197-271 15-106 (164)
88 TIGR01558 sm_term_P27 phage te 37.8 2.1E+02 0.0046 22.9 7.9 17 94-110 7-23 (116)
89 PF14723 SSFA2_C: Sperm-specif 37.5 2.3E+02 0.0049 26.1 8.2 63 98-161 107-170 (179)
90 PRK14472 F0F1 ATP synthase sub 37.4 2.6E+02 0.0057 23.9 10.1 69 92-160 66-142 (175)
91 COG4694 Uncharacterized protei 37.4 1.5E+02 0.0033 31.9 8.1 106 100-229 429-540 (758)
92 PF01226 Form_Nir_trans: Forma 37.4 18 0.00039 33.2 1.3 65 179-243 3-74 (250)
93 PF01496 V_ATPase_I: V-type AT 37.2 30 0.00064 36.1 3.0 61 176-236 345-437 (759)
94 PF07739 TipAS: TipAS antibiot 36.9 62 0.0013 24.9 4.1 45 95-141 4-48 (118)
95 PRK08307 stage III sporulation 36.8 1.5E+02 0.0032 25.8 6.8 56 93-152 82-148 (171)
96 PRK03557 zinc transporter ZitB 36.4 2.4E+02 0.0052 26.4 8.5 55 200-254 21-77 (312)
97 COG2979 Uncharacterized protei 36.3 1.1E+02 0.0024 28.8 6.3 22 228-252 63-84 (225)
98 PF04246 RseC_MucC: Positive r 36.3 73 0.0016 26.0 4.6 47 201-251 74-120 (135)
99 TIGR00220 mscL large conductan 36.2 40 0.00086 28.9 3.1 25 213-237 3-27 (127)
100 cd01019 ZnuA Zinc binding prot 36.2 1.4E+02 0.003 27.4 6.8 51 96-146 125-175 (286)
101 PF11172 DUF2959: Protein of u 35.9 3E+02 0.0065 25.6 8.9 73 93-166 36-108 (201)
102 PF10267 Tmemb_cc2: Predicted 35.5 4.8E+02 0.01 26.3 11.8 50 129-185 262-311 (395)
103 PRK13455 F0F1 ATP synthase sub 35.3 2.9E+02 0.0063 23.8 11.9 15 101-115 77-91 (184)
104 PF14257 DUF4349: Domain of un 35.2 3.4E+02 0.0073 24.5 9.1 75 99-175 105-196 (262)
105 TIGR02865 spore_II_E stage II 34.8 97 0.0021 33.0 6.3 24 246-269 253-276 (764)
106 PF10883 DUF2681: Protein of u 34.3 52 0.0011 26.7 3.4 26 228-253 6-31 (87)
107 PRK06743 flagellar motor prote 34.1 1.4E+02 0.0031 28.0 6.6 106 136-243 73-189 (254)
108 PRK13461 F0F1 ATP synthase sub 33.7 2.8E+02 0.0062 23.2 11.3 73 89-161 50-130 (159)
109 PF09991 DUF2232: Predicted me 33.6 3.2E+02 0.0069 24.0 8.4 39 205-243 38-77 (290)
110 PRK07194 fliG flagellar motor 33.2 69 0.0015 30.6 4.6 55 119-173 273-331 (334)
111 PRK08404 V-type ATP synthase s 33.0 2.6E+02 0.0057 22.6 11.0 72 98-172 23-94 (103)
112 PRK14475 F0F1 ATP synthase sub 33.0 3.1E+02 0.0067 23.4 9.5 39 89-127 45-83 (167)
113 PRK06231 F0F1 ATP synthase sub 32.7 3.6E+02 0.0079 24.1 10.1 65 89-153 93-165 (205)
114 PF07051 OCIA: Ovarian carcino 32.7 63 0.0014 27.4 3.7 42 202-246 45-94 (111)
115 PF13335 Mg_chelatase_2: Magne 32.4 2E+02 0.0042 22.9 6.3 83 94-184 2-93 (96)
116 KOG4119 G protein gamma subuni 32.3 89 0.0019 24.6 4.3 43 134-180 12-54 (71)
117 PF03779 SPW: SPW repeat; Int 31.6 66 0.0014 23.3 3.2 31 215-247 18-48 (51)
118 PF09925 DUF2157: Predicted me 31.5 3E+02 0.0065 22.8 7.6 25 246-270 111-135 (145)
119 PF09788 Tmemb_55A: Transmembr 31.5 1.2E+02 0.0026 29.1 5.7 56 218-273 193-248 (256)
120 COG0803 LraI ABC-type metal io 31.3 2.2E+02 0.0047 26.6 7.4 88 96-186 137-239 (303)
121 PRK08990 flagellar motor prote 31.3 2.2E+02 0.0048 26.6 7.4 106 136-244 75-190 (254)
122 PRK08383 putative monovalent c 31.1 3.2E+02 0.007 24.1 8.0 40 208-250 5-51 (168)
123 PF07464 ApoLp-III: Apolipopho 30.9 45 0.00098 29.2 2.7 24 94-117 58-81 (155)
124 cd00907 Bacterioferritin Bacte 30.9 2.8E+02 0.0061 22.2 9.0 71 97-170 82-152 (153)
125 PF05615 THOC7: Tho complex su 30.9 3E+02 0.0066 22.6 7.7 60 92-151 42-110 (139)
126 PF03904 DUF334: Domain of unk 30.8 4.8E+02 0.01 24.8 10.2 39 120-158 66-104 (230)
127 COG3759 Predicted membrane pro 30.8 1E+02 0.0022 26.7 4.7 43 205-247 57-99 (121)
128 TIGR03750 conj_TIGR03750 conju 30.7 3E+02 0.0065 23.2 7.4 55 208-263 33-89 (111)
129 cd00068 GGL G protein gamma su 30.6 82 0.0018 23.0 3.6 41 133-177 3-43 (57)
130 COG4858 Uncharacterized membra 30.6 2.9E+02 0.0063 26.1 7.9 47 204-250 103-154 (226)
131 PF06013 WXG100: Proteins of 1 30.4 1.6E+02 0.0035 20.5 5.1 38 129-166 44-81 (86)
132 TIGR01760 tape_meas_TP901 phag 30.2 1.6E+02 0.0035 26.9 6.2 48 141-198 284-331 (350)
133 PRK04201 zinc transporter ZupT 30.1 2.5E+02 0.0054 25.7 7.4 41 194-234 178-219 (265)
134 PRK13954 mscL large-conductanc 29.9 59 0.0013 27.7 3.1 25 213-237 3-27 (119)
135 PF02439 Adeno_E3_CR2: Adenovi 29.8 85 0.0019 22.3 3.4 32 221-252 2-34 (38)
136 PF13829 DUF4191: Domain of un 29.8 94 0.002 29.1 4.7 56 176-236 9-65 (224)
137 TIGR00983 3a0801s02tim23 mitoc 29.6 2.9E+02 0.0063 24.0 7.4 22 200-221 36-57 (149)
138 PRK09173 F0F1 ATP synthase sub 29.5 3.4E+02 0.0073 22.7 10.1 35 88-122 46-80 (159)
139 PRK03980 flap endonuclease-1; 29.4 77 0.0017 29.9 4.2 62 71-142 28-89 (292)
140 PF09548 Spore_III_AB: Stage I 29.4 2.3E+02 0.005 24.3 6.8 56 94-153 82-148 (170)
141 PHA01080 hypothetical protein 29.0 58 0.0013 26.4 2.8 24 224-248 48-72 (80)
142 PF11351 DUF3154: Protein of u 29.0 3.4E+02 0.0074 22.6 8.1 58 193-253 62-121 (123)
143 PF14023 DUF4239: Protein of u 28.7 93 0.002 26.9 4.3 17 145-161 54-70 (209)
144 PRK02946 aceK bifunctional iso 28.5 1.4E+02 0.0029 31.7 6.0 97 97-203 6-122 (575)
145 PF11780 DUF3318: Protein of u 28.5 98 0.0021 26.9 4.3 23 233-255 106-128 (146)
146 PRK00567 mscL large-conductanc 28.5 82 0.0018 27.2 3.8 25 213-237 3-27 (134)
147 PF11990 DUF3487: Protein of u 28.5 2.9E+02 0.0062 23.3 7.0 46 221-266 48-95 (121)
148 TIGR02833 spore_III_AB stage I 28.5 1.9E+02 0.0041 25.1 6.1 56 93-152 81-147 (170)
149 TIGR02359 thiW thiW protein. L 28.4 2.7E+02 0.0059 24.5 7.1 21 200-220 43-64 (160)
150 PRK13953 mscL large-conductanc 28.3 65 0.0014 27.6 3.1 25 213-237 3-27 (125)
151 CHL00118 atpG ATP synthase CF0 28.2 3.6E+02 0.0079 22.7 9.7 12 113-124 81-92 (156)
152 PRK01406 gltX glutamyl-tRNA sy 27.9 3.8E+02 0.0082 27.1 8.9 88 99-186 353-465 (476)
153 PRK14474 F0F1 ATP synthase sub 27.7 4.9E+02 0.011 24.0 10.6 28 89-116 50-77 (250)
154 TIGR00400 mgtE Mg2+ transporte 27.6 2.3E+02 0.0049 27.9 7.1 28 196-223 355-383 (449)
155 PHA00490 terminal protein 27.5 61 0.0013 30.8 3.1 101 97-211 56-161 (266)
156 PF09972 DUF2207: Predicted me 27.5 5.3E+02 0.011 24.3 10.2 22 102-123 333-354 (511)
157 PRK13955 mscL large-conductanc 27.4 87 0.0019 27.0 3.8 25 213-237 3-27 (130)
158 PF04474 DUF554: Protein of un 27.3 4.2E+02 0.0092 24.7 8.4 62 204-269 5-69 (226)
159 PF03073 TspO_MBR: TspO/MBR fa 27.3 3.6E+02 0.0077 22.4 7.3 44 208-251 6-63 (148)
160 PRK10862 SoxR reducing system 26.9 1.5E+02 0.0032 25.6 5.1 11 240-250 116-126 (154)
161 PF13828 DUF4190: Domain of un 26.8 2.8E+02 0.006 20.9 6.5 22 231-252 17-38 (62)
162 PRK13952 mscL large-conductanc 26.6 92 0.002 27.1 3.8 26 212-237 4-29 (142)
163 PF02667 SCFA_trans: Short cha 26.6 1.9E+02 0.0041 29.7 6.5 70 169-255 72-157 (453)
164 TIGR00980 3a0801so1tim17 mitoc 26.5 4.1E+02 0.0088 23.8 7.9 24 196-220 12-35 (170)
165 PRK01100 putative accessory ge 26.4 3.6E+02 0.0078 24.1 7.7 69 200-269 32-103 (210)
166 TIGR02926 AhaH ATP synthase ar 26.4 3E+02 0.0065 21.1 9.7 67 96-165 17-83 (85)
167 PRK09545 znuA high-affinity zi 26.4 2.8E+02 0.0061 26.0 7.3 51 97-147 150-200 (311)
168 KOG1265 Phospholipase C [Lipid 26.4 4E+02 0.0087 30.4 9.2 89 97-186 1050-1139(1189)
169 TIGR03007 pepcterm_ChnLen poly 26.2 3.7E+02 0.0079 26.2 8.2 19 140-158 359-377 (498)
170 PF04123 DUF373: Domain of unk 26.2 2.1E+02 0.0045 28.2 6.5 48 197-245 158-205 (344)
171 COG4395 Uncharacterized protei 26.2 1.8E+02 0.0038 28.3 5.9 24 212-236 33-56 (281)
172 PF01988 VIT1: VIT family; In 25.9 4.6E+02 0.01 23.1 12.8 29 215-243 150-180 (213)
173 PF10348 DUF2427: Domain of un 25.8 2.4E+02 0.0052 22.9 5.9 69 181-252 4-72 (105)
174 PF11638 DnaA_N: DnaA N-termin 25.7 57 0.0012 23.2 2.0 23 98-126 1-23 (65)
175 PF06120 Phage_HK97_TLTM: Tail 25.5 2E+02 0.0043 27.9 6.2 49 104-152 56-104 (301)
176 TIGR01219 Pmev_kin_ERG8 phosph 25.3 1.6E+02 0.0035 29.8 5.8 74 87-161 292-377 (454)
177 PF02038 ATP1G1_PLM_MAT8: ATP1 25.1 80 0.0017 23.5 2.7 16 228-243 16-31 (50)
178 PF14357 DUF4404: Domain of un 25.0 2.1E+02 0.0046 22.5 5.3 74 102-187 3-83 (85)
179 PF11381 DUF3185: Protein of u 24.9 1.7E+02 0.0037 22.2 4.5 39 232-270 9-56 (59)
180 COG0711 AtpF F0F1-type ATP syn 24.8 4.5E+02 0.0097 22.5 11.0 77 90-166 52-136 (161)
181 COG1556 Uncharacterized conser 24.6 83 0.0018 29.3 3.4 43 96-141 30-72 (218)
182 PF04888 SseC: Secretion syste 24.5 2.7E+02 0.0058 25.7 6.6 51 97-160 13-63 (306)
183 PRK10711 hypothetical protein; 24.3 2.5E+02 0.0054 26.3 6.4 71 203-274 8-82 (231)
184 PF13315 DUF4085: Protein of u 24.3 4.5E+02 0.0098 24.4 8.0 51 135-186 75-126 (208)
185 PRK14788 lipoprotein signal pe 24.2 1.5E+02 0.0033 27.0 4.9 17 253-269 87-103 (200)
186 COG0172 SerS Seryl-tRNA synthe 24.2 72 0.0016 32.3 3.1 26 96-121 33-58 (429)
187 PLN02777 photosystem I P subun 24.1 34 0.00073 30.9 0.7 32 76-107 62-93 (167)
188 PRK09109 motC flagellar motor 24.1 5.3E+02 0.011 23.8 8.4 55 172-228 118-179 (246)
189 PF11460 DUF3007: Protein of u 24.0 1.5E+02 0.0032 25.0 4.4 39 200-238 5-43 (104)
190 PF01925 TauE: Sulfite exporte 23.9 3E+02 0.0066 23.5 6.5 48 199-246 62-109 (240)
191 PF13664 DUF4149: Domain of un 23.9 3.3E+02 0.0071 20.7 6.8 21 201-221 2-22 (101)
192 PF12301 CD99L2: CD99 antigen 23.8 79 0.0017 28.2 3.0 30 226-255 115-145 (169)
193 PF01277 Oleosin: Oleosin; In 23.6 74 0.0016 27.1 2.7 25 143-167 91-115 (118)
194 PF09677 TrbI_Ftype: Type-F co 23.5 2.3E+02 0.0049 23.6 5.4 36 101-137 38-73 (111)
195 TIGR02231 conserved hypothetic 23.3 2.7E+02 0.0058 27.8 6.8 17 96-112 95-111 (525)
196 TIGR01069 mutS2 MutS2 family p 23.3 5.5E+02 0.012 27.6 9.5 60 102-161 531-590 (771)
197 PF06409 NPIP: Nuclear pore co 23.2 5.7E+02 0.012 24.8 8.6 41 89-129 77-119 (265)
198 KOG0423 Ubiquitin-protein liga 23.1 88 0.0019 29.0 3.2 24 107-133 127-150 (223)
199 PF00430 ATP-synt_B: ATP synth 23.1 3.7E+02 0.0081 21.0 7.5 20 134-153 86-105 (132)
200 PRK14895 gltX glutamyl-tRNA sy 22.8 4.7E+02 0.01 27.2 8.6 89 98-186 390-503 (513)
201 PF02529 PetG: Cytochrome B6-F 22.7 1.7E+02 0.0037 20.7 3.8 28 226-253 4-34 (37)
202 PRK05686 fliG flagellar motor 22.3 1.7E+02 0.0037 27.8 5.0 44 122-165 282-329 (339)
203 PRK10907 intramembrane serine 22.3 3.9E+02 0.0084 25.3 7.3 37 212-252 184-220 (276)
204 PRK05759 F0F1 ATP synthase sub 22.3 4.4E+02 0.0096 21.6 9.7 65 93-157 53-125 (156)
205 PRK02935 hypothetical protein; 22.2 2.8E+02 0.006 23.8 5.7 51 191-243 6-56 (110)
206 PRK09713 focB putative formate 22.2 87 0.0019 29.7 3.1 54 189-242 24-83 (282)
207 TIGR03321 alt_F1F0_F0_B altern 22.1 6E+02 0.013 23.0 10.1 65 88-152 49-121 (246)
208 PF05433 Rick_17kDa_Anti: Glyc 22.1 1.6E+02 0.0035 20.7 3.7 26 211-236 8-36 (42)
209 PHA02047 phage lambda Rz1-like 21.9 3.6E+02 0.0079 22.8 6.3 52 127-183 25-77 (101)
210 cd01137 PsaA Metal binding pro 21.9 3.9E+02 0.0084 24.6 7.2 51 96-146 121-171 (287)
211 PF05119 Terminase_4: Phage te 21.6 3.6E+02 0.0078 20.3 7.2 44 97-142 1-44 (100)
212 PF15556 Zwint: ZW10 interacto 21.5 4.9E+02 0.011 24.9 7.7 42 120-161 125-166 (252)
213 PRK06937 type III secretion sy 21.4 5.6E+02 0.012 22.5 9.2 60 102-161 33-104 (204)
214 TIGR03745 conj_TIGR03745 integ 21.3 1.8E+02 0.0038 24.6 4.4 24 240-263 61-84 (104)
215 PF08285 DPM3: Dolichol-phosph 21.2 1E+02 0.0023 24.8 2.9 20 135-154 67-86 (91)
216 PF13536 EmrE: Multidrug resis 20.9 3.6E+02 0.0079 20.9 5.9 69 198-267 32-101 (113)
217 PF12699 phiKZ_IP: phiKZ-like 20.9 4.5E+02 0.0098 25.3 7.6 32 97-128 51-86 (339)
218 PRK05715 NADH:ubiquinone oxido 20.4 3.9E+02 0.0085 20.9 6.0 27 206-232 10-36 (100)
219 KOG0286 G-protein beta subunit 20.3 1.1E+02 0.0023 30.5 3.3 24 131-154 4-27 (343)
220 cd07595 BAR_RhoGAP_Rich-like T 20.1 5.2E+02 0.011 23.9 7.6 62 88-149 168-232 (244)
221 PF03480 SBP_bac_7: Bacterial 20.1 1.8E+02 0.0039 26.0 4.5 49 118-166 211-260 (286)
No 1
>KOG4267 consensus Predicted membrane protein [Function unknown]
Probab=99.87 E-value=1.4e-22 Score=166.21 Aligned_cols=77 Identities=31% Similarity=0.455 Sum_probs=73.7
Q ss_pred cccceechhhHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhCCC-CchhHHH-HHHHHHHHHHHHHhh
Q 023802 197 LRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGK-TSPVALK-GQAGQRVVYFTIEIT 274 (277)
Q Consensus 197 mHDFclgipYg~LVa~GGiiGY~kaGSi~SL~aGl~fG~lLl~aGygSLk~~k~gk-~s~l~L~-~SavLAavm~~R~~~ 274 (277)
|||||+||||++||++||||||+|+||++||++|++||++ +||+||+.|+|++ ++++++. ++++|+++|++|.++
T Consensus 1 m~~~~f~~~y~~Lv~~GGliGY~kkgSi~SL~aGl~~G~l---~g~~s~~l~~~~~~~~~~~l~~~s~~L~gvmg~R~~~ 77 (110)
T KOG4267|consen 1 MHDDCFGIPYAALVTVGGLIGYLKKGSIPSLAAGLLFGAL---AGYGSYLLSRDKKGGSLVALGGTSAALLGVMGQRFYR 77 (110)
T ss_pred CCchhhhhhHHHHHHhcceeeeeecCCcchHHHHHHHHHH---HHHHHHHhhcCCCcCchhHHHHHHHHHHHHHhhhhhc
Confidence 7999999999999999999999999999999999999988 9999999999999 9999999 699999999999876
Q ss_pred hc
Q 023802 275 KK 276 (277)
Q Consensus 275 ~~ 276 (277)
.+
T Consensus 78 s~ 79 (110)
T KOG4267|consen 78 SR 79 (110)
T ss_pred cC
Confidence 53
No 2
>PF03647 Tmemb_14: Transmembrane proteins 14C; InterPro: IPR005349 This family of short membrane proteins is as yet uncharacterised.; GO: 0016020 membrane; PDB: 2LOS_A 2LOO_A 2LOP_A.
Probab=99.61 E-value=5.4e-17 Score=128.20 Aligned_cols=74 Identities=35% Similarity=0.420 Sum_probs=65.0
Q ss_pred ceechhhHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHhhh
Q 023802 200 FYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEITK 275 (277)
Q Consensus 200 FclgipYg~LVa~GGiiGY~kaGSi~SL~aGl~fG~lLl~aGygSLk~~k~gk~s~l~L~~SavLAavm~~R~~~~ 275 (277)
||++++||+++++||++||+|+||++||++|+++|++++++++.+. ++++....+++.+|++|+++|++|.++.
T Consensus 1 f~~~~~y~~ll~~GG~~Gy~k~gS~~SLiaG~~~G~ll~~~~~~~~--~~~~~~~~~~l~~s~~L~~~m~~R~~~t 74 (96)
T PF03647_consen 1 FHLAIPYGALLAVGGIMGYVKKGSKPSLIAGVGFGALLLYAGYLSL--TNQKWGSELALAISAVLAGVMGYRYIKT 74 (96)
T ss_dssp HCHCHHHHHHHHHHHHHHCTSS--CHCHHHHHHHHHHHHHHHCCCS---STHHCCHHHHHHHHHHHHCCTSSS-SS
T ss_pred CchhHHHHHHHHHhhHHHhHhccchhHHHHHHHHHHHHHHHHHHhh--ccCCccHHHHHHHHHHHHHHHHHHHHHc
Confidence 8999999999999999999999999999999999999888888866 6667788999999999999999997653
No 3
>COG5548 Small integral membrane protein [Function unknown]
Probab=98.70 E-value=4e-08 Score=80.46 Aligned_cols=69 Identities=23% Similarity=0.279 Sum_probs=56.0
Q ss_pred chhhHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCc--hhHHHHHHHHHHHHHHHHhhh
Q 023802 203 GIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTS--PVALKGQAGQRVVYFTIEITK 275 (277)
Q Consensus 203 gipYg~LVa~GGiiGY~kaGSi~SL~aGl~fG~lLl~aGygSLk~~k~gk~s--~l~L~~SavLAavm~~R~~~~ 275 (277)
.|.|+.|..+||+|||++++|++||++|+++|+++..++|. ..+|++- ..++..++++-+.-+.|.++.
T Consensus 7 A~~ls~L~tiGGliGY~rk~S~vSL~sG~~~G~~~~~A~yL----~~~g~~~Gl~~A~~~s~~Ll~~~~~R~~~s 77 (105)
T COG5548 7 AIALSMLATIGGLIGYFRKNSQVSLLSGVFSGLLLFVAAYL----QLQGQTWGLILATVVSAALLVFFALRLVRS 77 (105)
T ss_pred HHHHHHHHHhhhHHHHHhcCCchhhHHHHHHhHHHHHHHHH----HHcCcccCeehHHHHHHHHHHhcchhcccc
Confidence 57899999999999999999999999999999998888887 3334333 467778888877777776543
No 4
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=93.44 E-value=2.4 Score=37.24 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=14.7
Q ss_pred cccceechhhHHHH------HHhhHHHHHhc
Q 023802 197 LRDFYLGIPYGLLL------TLGGFISFMVT 221 (277)
Q Consensus 197 mHDFclgipYg~LV------a~GGiiGY~ka 221 (277)
.-++|.-+.+++++ .+-|+++++..
T Consensus 75 ~~~~~~~~ld~~L~~~~if~~~~gi~~~f~~ 105 (206)
T PF06570_consen 75 NSNPWLMALDNSLLFFGIFSLLFGIMGFFSP 105 (206)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44556655555544 44577777666
No 5
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=88.43 E-value=6.5 Score=40.02 Aligned_cols=71 Identities=24% Similarity=0.406 Sum_probs=43.7
Q ss_pred hHhHHhhcCc---hhhHHHhhcCCCCc---cc-ccccccccceec-----hhhHHHHHHhhHHHHHhc------------
Q 023802 166 YLTEATENNP---EVKEIVETFTLPTE---DV-KEFSTLRDFYLG-----IPYGLLLTLGGFISFMVT------------ 221 (277)
Q Consensus 166 yl~~aaensp---~vK~i~et~~~~~e---~~-~~~s~mHDFclg-----ipYg~LVa~GGiiGY~ka------------ 221 (277)
.-+..-+|++ +..+|++..+-|.= || --.+..+=+.+| ++||+++.++|++-..+.
T Consensus 315 ~~Pt~l~N~~~~~pFE~lv~mYg~P~Y~EiDPT~~~ai~f~lfFGmM~gD~GyGLil~l~~~~l~~~~~k~~~~~~~~~~ 394 (646)
T PRK05771 315 EVPTKLKNPKFIKPFESLTEMYSLPKYNEIDPTPFLAIFFPLFFGMMLGDAGYGLLLLLIGLLLSFKLKKKSEGLKRLLK 394 (646)
T ss_pred CCCEEeeCCchhhhHHHHHHHcCCCCCCCcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3444455665 56688888777621 22 222455656666 478999999777544322
Q ss_pred ----CChhHHHHHHHHHHH
Q 023802 222 ----GSIPAIRFGVILGGT 236 (277)
Q Consensus 222 ----GSi~SL~aGl~fG~l 236 (277)
-++.|.++|+++|..
T Consensus 395 il~~~gi~sii~G~lyG~f 413 (646)
T PRK05771 395 ILIYLGISTIIWGLLTGSF 413 (646)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 356677777777776
No 6
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=86.29 E-value=7.2 Score=34.23 Aligned_cols=68 Identities=15% Similarity=0.100 Sum_probs=58.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcCc
Q 023802 108 FREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNP 175 (277)
Q Consensus 108 fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaensp 175 (277)
.|++|.+++.--++...-...+|..+..||.+.|..+++..++.+..--+.+-+++.+-+...++|--
T Consensus 56 ~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~~~~~~~~~~~~~~~~~ 123 (155)
T PRK06569 56 LTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSINQNIEDINLAAKQFR 123 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777778889999999999999999999999999999999999999999998544
No 7
>PRK10884 SH3 domain-containing protein; Provisional
Probab=83.12 E-value=14 Score=33.38 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHH
Q 023802 134 LKETAEQLKIEAEKARKDLTVV 155 (277)
Q Consensus 134 L~etse~L~iqa~ka~~~L~~~ 155 (277)
|++--++|+.|.+++++++..+
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l 158 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAA 158 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555443
No 8
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=82.17 E-value=9 Score=32.51 Aligned_cols=55 Identities=13% Similarity=0.022 Sum_probs=43.0
Q ss_pred hhHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHH
Q 023802 213 GGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFT 270 (277)
Q Consensus 213 GGiiGY~kaGSi~SL~aGl~fG~lLl~aGygSLk~~k~gk~s~l~L~~SavLAavm~~ 270 (277)
++.+.++..|+...++...+.|.+ .++......|.+.+.....+.+++++++++.
T Consensus 114 ~~~fa~lfgg~~~~~~~a~i~g~~---~~~~~~~~~r~~~~~~~~~~~aa~~~~~~a~ 168 (193)
T PF06738_consen 114 SAAFALLFGGSWIDMIVAFILGLL---VGLLRQLLSRRRLNSFIQEFIAAFLASLLAA 168 (193)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH---HHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 334556689999999999999999 6666666788888888888888887777644
No 9
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=81.18 E-value=11 Score=39.62 Aligned_cols=41 Identities=7% Similarity=0.138 Sum_probs=24.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023802 110 EQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARK 150 (277)
Q Consensus 110 eqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~ 150 (277)
.+...|+.+...-+.-+.+++...+++..++.+.|.+....
T Consensus 320 ~~l~~l~~v~~~nl~~~v~~~~~~~~~ip~~v~~qt~~~v~ 360 (806)
T PF05478_consen 320 SQLNNLEEVIKTNLSSIVQEGNSRFNDIPEKVQNQTSDVVP 360 (806)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 33445555555555666667777777777766666554443
No 10
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=80.46 E-value=3.8 Score=34.79 Aligned_cols=43 Identities=28% Similarity=0.260 Sum_probs=25.8
Q ss_pred chhhHHHHHHhhHHHHHhcCChhHHH-------HHHHHHHHHHHHHHHHH
Q 023802 203 GIPYGLLLTLGGFISFMVTGSIPAIR-------FGVILGGTLLALSIASL 245 (277)
Q Consensus 203 gipYg~LVa~GGiiGY~kaGSi~SL~-------aGl~fG~lLl~aGygSL 245 (277)
.+.-|++++++||++.+..+.-.+.+ +.+..|++|+..|+..+
T Consensus 11 ~iilgilli~~gI~~Lv~~~~~l~~~~s~~lg~~~lAlg~vL~~~g~~~~ 60 (191)
T PF04156_consen 11 LIILGILLIASGIAALVLFISGLGALISFILGIALLALGVVLLSLGLLCL 60 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999977776422222 22224566555565444
No 11
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=79.91 E-value=16 Score=32.83 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=24.4
Q ss_pred hcChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 023802 91 KASAKESEEAWKQTLAAFREQAIKMQSVSQEAYEI 125 (277)
Q Consensus 91 ~~~~ees~E~Wkq~L~~fkeqa~kmq~~s~eaY~v 125 (277)
++.-||-|++=+..+++.+.+-...+.+ ..|||.
T Consensus 3 ~ASfeEIq~Arn~ll~~y~gd~~~~~~I-EaAYD~ 36 (194)
T PF11833_consen 3 DASFEEIQAARNRLLAQYAGDEKSREAI-EAAYDA 36 (194)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHH
Confidence 4556788888888888888776666655 346763
No 12
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=73.33 E-value=44 Score=30.03 Aligned_cols=75 Identities=23% Similarity=0.252 Sum_probs=49.1
Q ss_pred hhhhcChhhHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 023802 88 SEIKASAKESEEAWKQTLAAFREQAIKMQSVSQ-EAYEIY-------SKRATAILKETAEQLKIEAEKARKDLTVVAKEL 159 (277)
Q Consensus 88 ~~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s~-eaY~vy-------s~ka~~vL~etse~L~iqa~ka~~~L~~~ake~ 159 (277)
++.+.+.++.++.-++.|..-|.++..|-.-.. ++-..+ -+.+...+.++-+++..+.++|..+|..++.++
T Consensus 97 e~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~A~~el~~~a~e~ 176 (204)
T PRK09174 97 ARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARIAAIKAKAMADVGSIAEET 176 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666777777788888877777643222 222221 223344667777788888888888888888888
Q ss_pred hhh
Q 023802 160 SED 162 (277)
Q Consensus 160 ~e~ 162 (277)
..+
T Consensus 177 A~~ 179 (204)
T PRK09174 177 AAA 179 (204)
T ss_pred HHH
Confidence 773
No 13
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=73.26 E-value=6.8 Score=34.47 Aligned_cols=54 Identities=19% Similarity=0.218 Sum_probs=46.6
Q ss_pred cceechhhHHHHHHhhHHHHHhcCC-------hhHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 023802 199 DFYLGIPYGLLLTLGGFISFMVTGS-------IPAIRFGVILGGTLLALSIASLRSHKKGK 252 (277)
Q Consensus 199 DFclgipYg~LVa~GGiiGY~kaGS-------i~SL~aGl~fG~lLl~aGygSLk~~k~gk 252 (277)
=++.|+|-++-+++.-+..|++.+. ++-++..+.||+.|+.++||.|-.+=|+.
T Consensus 66 ~~~~GiP~~lG~~~f~~~y~l~~~~~~dvP~~~~~~~S~~~Fg~gllGisYGilSaSWD~~ 126 (153)
T PF11947_consen 66 AVFVGIPTALGVAVFVVFYYLKSRQIVDVPPWAVLLVSLVFFGLGLLGISYGILSASWDPE 126 (153)
T ss_pred HHHhchHHHHHHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHHHhhhhhhcccccCCC
Confidence 4788999999999999999999876 46678899999999999999998877764
No 14
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=73.19 E-value=41 Score=26.04 Aligned_cols=52 Identities=19% Similarity=0.224 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023802 98 EEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKAR 149 (277)
Q Consensus 98 ~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~ 149 (277)
++.=.++.+.+.+-+..+-+.+.+.++---+|+..-+.++.++++...++++
T Consensus 4 ~~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~ 55 (94)
T PF05957_consen 4 KAELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAR 55 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555666666666666655555555555554444444
No 15
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=72.51 E-value=11 Score=28.31 Aligned_cols=7 Identities=43% Similarity=0.510 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 023802 141 LKIEAEK 147 (277)
Q Consensus 141 L~iqa~k 147 (277)
++.+++.
T Consensus 53 ~k~~~~~ 59 (74)
T PF12732_consen 53 VKEKAEE 59 (74)
T ss_pred HHHHHHH
Confidence 3333333
No 16
>PF15556 Zwint: ZW10 interactor
Probab=70.72 E-value=68 Score=30.42 Aligned_cols=68 Identities=31% Similarity=0.447 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhh-----------------hHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhHHH
Q 023802 94 AKESEEAWKQTLAAFREQAIKMQSV-----------------SQEAYEIYSKR---ATAILKETAEQLKIEAEKARKDLT 153 (277)
Q Consensus 94 ~ees~E~Wkq~L~~fkeqa~kmq~~-----------------s~eaY~vys~k---a~~vL~etse~L~iqa~ka~~~L~ 153 (277)
.-++.|-||..=+++.+.+.-+-+. =++|++-|--| ||+-++-+..|-+.|-+|--..|.
T Consensus 61 ai~aKeQWKeLKAtYqehVEaIk~alt~aL~q~eEaqrK~~qLqeA~eqlqaKKqva~eK~r~AQkqwqlqQeK~LQ~La 140 (252)
T PF15556_consen 61 AIEAKEQWKELKATYQEHVEAIKSALTQALPQVEEAQRKRTQLQEALEQLQAKKQVAMEKLRAAQKQWQLQQEKHLQHLA 140 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999988888776655443 34555554322 566666666666666666666777
Q ss_pred HHHHHhhh
Q 023802 154 VVAKELSE 161 (277)
Q Consensus 154 ~~ake~~e 161 (277)
.+..||-+
T Consensus 141 e~sAEvre 148 (252)
T PF15556_consen 141 EVSAEVRE 148 (252)
T ss_pred HHHHHHHH
Confidence 77777755
No 17
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=70.25 E-value=65 Score=27.15 Aligned_cols=73 Identities=29% Similarity=0.318 Sum_probs=38.9
Q ss_pred hhhcChhhHHHHHHHHHHHHHHHHHHhhhh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 023802 89 EIKASAKESEEAWKQTLAAFREQAIKMQSV--------SQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELS 160 (277)
Q Consensus 89 ~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~--------s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~ 160 (277)
+.+.+.++-++.-++-|..-|++|.++..- -++.-+.--+.+...+.++-+++..+.++|+++|..-+..+.
T Consensus 67 ~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~~v~~lA 146 (156)
T CHL00118 67 EILAKANELTKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNEATKQLEAQKEKALKSLEEQVDTLS 146 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556666666666666554322 223333344455555666666666666666666655544444
Q ss_pred h
Q 023802 161 E 161 (277)
Q Consensus 161 e 161 (277)
.
T Consensus 147 ~ 147 (156)
T CHL00118 147 D 147 (156)
T ss_pred H
Confidence 3
No 18
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=69.66 E-value=51 Score=29.58 Aligned_cols=74 Identities=15% Similarity=0.189 Sum_probs=36.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcCc-hhhHHHh
Q 023802 109 REQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNP-EVKEIVE 182 (277)
Q Consensus 109 keqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaensp-~vK~i~e 182 (277)
|++|.+++.--.+...-=.++|..++.++.++.+...+..++.+..-++..-++.++.+...-+..- +|++++.
T Consensus 100 k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~A~~el~~~a~ 174 (204)
T PRK09174 100 KQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARIAAIKAKAMADVGSIAE 174 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444555666666666555555555555554444444555554444433333 4544443
No 19
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=68.50 E-value=70 Score=27.86 Aligned_cols=78 Identities=23% Similarity=0.230 Sum_probs=48.5
Q ss_pred hhhhcChhhHHHHHHHHHHHHHHHHHHhhhhhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 023802 88 SEIKASAKESEEAWKQTLAAFREQAIKMQSVSQ--------EAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKEL 159 (277)
Q Consensus 88 ~~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s~--------eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~ 159 (277)
++.+.+.++.++.....|..-|.++..+-.-.+ +.=+.-.+.+...+.++-+++..+.++|.++|...+.++
T Consensus 75 e~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A~~e~~~~~aea~~~I~~~k~~a~~~l~~~a~~l 154 (181)
T PRK13454 75 EELKQKAVEAEKAYNKALADARAEAQRIVAETRAEIQAELDVAIAKADAEIAAKAAESEKRIAEIRAGALESVEEVAKDT 154 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455556666777777777777666544332 222223344555666777777777888888888888888
Q ss_pred hhhhhh
Q 023802 160 SEDGKK 165 (277)
Q Consensus 160 ~e~gke 165 (277)
+.+--+
T Consensus 155 A~~i~~ 160 (181)
T PRK13454 155 AEALVA 160 (181)
T ss_pred HHHHHH
Confidence 774433
No 20
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=68.46 E-value=53 Score=25.41 Aligned_cols=8 Identities=25% Similarity=0.426 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 023802 103 QTLAAFRE 110 (277)
Q Consensus 103 q~L~~fke 110 (277)
+-|+++++
T Consensus 5 ~~l~~l~~ 12 (94)
T PF05957_consen 5 AELEQLRA 12 (94)
T ss_pred HHHHHHHH
Confidence 33444443
No 21
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=66.01 E-value=9.4 Score=33.14 Aligned_cols=61 Identities=34% Similarity=0.450 Sum_probs=37.6
Q ss_pred chhhHHHhhcCCCCcccccccccccceechhhHHHHHHhhHHH----HHhc--CChhHHHHHHHH--HHHHHHHH
Q 023802 175 PEVKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFIS----FMVT--GSIPAIRFGVIL--GGTLLALS 241 (277)
Q Consensus 175 p~vK~i~et~~~~~e~~~~~s~mHDFclgipYg~LVa~GGiiG----Y~ka--GSi~SL~aGl~f--G~lLl~aG 241 (277)
|.+-|++=|.+.+ -.+++.+| ..+|+|+.+.+.|++. |..+ |++.+...=+++ |.+||++|
T Consensus 30 p~vsE~~lt~atg---g~e~s~Yr---ci~pfG~vili~GvvvT~vays~n~~~si~~~~G~vlLs~GLmlL~~~ 98 (129)
T PF15099_consen 30 PSVSESQLTAATG---GAEWSCYR---CIMPFGVVILIAGVVVTAVAYSFNSHGSIISIFGPVLLSLGLMLLACS 98 (129)
T ss_pred ecccHHHHhccCC---CCCceEEE---EEEEehHHHHHHhhHhheeeEeecCCcchhhhehHHHHHHHHHHHHhh
Confidence 3444554444332 34577777 7899999999999987 3333 777665444333 44444444
No 22
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=64.62 E-value=48 Score=27.53 Aligned_cols=53 Identities=23% Similarity=0.351 Sum_probs=34.7
Q ss_pred ceechhhHHHH-HHhhHHHHHhcCChhHHHH-HHHHHHHHHHHHHHHHHHhhCCC
Q 023802 200 FYLGIPYGLLL-TLGGFISFMVTGSIPAIRF-GVILGGTLLALSIASLRSHKKGK 252 (277)
Q Consensus 200 FclgipYg~LV-a~GGiiGY~kaGSi~SL~a-Gl~fG~lLl~aGygSLk~~k~gk 252 (277)
..+|..||+++ ++|.+++.+..|..+-... -+..|..-+..|+...+.-++.+
T Consensus 47 ~l~Gp~~G~ivg~ig~~l~dll~g~~~~~~~~~i~~~~~g~i~g~~~~~~~~~~~ 101 (169)
T PF07155_consen 47 LLFGPKYGAIVGAIGDLLSDLLSGYGPWAPFTMISKGLMGFIAGLIFRKKKKKKK 101 (169)
T ss_pred HHHChHHHHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34678889988 5899999999987543333 34444444447877776644443
No 23
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=64.22 E-value=45 Score=31.69 Aligned_cols=51 Identities=10% Similarity=0.229 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcCchhhHHHhhcCCCCcccccccc
Q 023802 140 QLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEVKEIVETFTLPTEDVKEFST 196 (277)
Q Consensus 140 ~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaensp~vK~i~et~~~~~e~~~~~s~ 196 (277)
.|+.+.|-+++.+..+-+-.-|-. +..+.+ .+++. |++....|. .|.++.+
T Consensus 346 ~L~r~~~~~~~~y~~ll~r~~e~~---l~~~~~-~~~~~-Vi~~a~~P~-~P~~P~~ 396 (444)
T TIGR03017 346 VLQRDVENAQRAYDAAMQRYTQTR---IEAQSN-QTDIS-ILNPAVPPL-EPSSPRL 396 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHhccC-CCceE-eeCCCCCCC-CCCCCch
Confidence 455555556555555444443322 112222 23333 556655543 4444433
No 24
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=64.13 E-value=86 Score=26.26 Aligned_cols=65 Identities=22% Similarity=0.194 Sum_probs=41.7
Q ss_pred hhhhcChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 023802 88 SEIKASAKESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVV 155 (277)
Q Consensus 88 ~~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ 155 (277)
++.+.+.++.++.+.+.|..-|.+|.++. .++=+.-.+.+..++.++..++..+.++|..+|..=
T Consensus 51 ~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~---~~a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~l~~e 115 (141)
T PRK08476 51 KTNSSDVSEIEHEIETILKNAREEANKIR---QKAIAKAKEEAEKKIEAKKAELESKYEAFAKQLANQ 115 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566788888899999998887774 344444445555566666666666666666555443
No 25
>PF15508 NAAA-beta: beta subunit of N-acylethanolamine-hydrolyzing acid amidase
Probab=64.00 E-value=53 Score=25.74 Aligned_cols=30 Identities=13% Similarity=0.422 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 023802 96 ESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSK 128 (277)
Q Consensus 96 es~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ 128 (277)
..+|-|+|....||++ |+.+.+...++...
T Consensus 13 pP~eRw~~i~~~~k~~---i~~l~~~~~~~~~~ 42 (95)
T PF15508_consen 13 PPEERWVQIAKDYKDE---IRELIEVLKDLLQS 42 (95)
T ss_pred CHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3689999999999954 55555555555443
No 26
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=63.85 E-value=21 Score=27.02 Aligned_cols=51 Identities=18% Similarity=0.235 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcCchhhHHHhhcCCCCcccccccc
Q 023802 140 QLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEVKEIVETFTLPTEDVKEFST 196 (277)
Q Consensus 140 ~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaensp~vK~i~et~~~~~e~~~~~s~ 196 (277)
+|+.++|-.++-...+.+..-|.-. .. +.+.++++ |++....|. .|.+..+
T Consensus 8 ~L~R~~~~~~~~Y~~Ll~r~~e~~~---~~-~~~~~~~~-ivd~A~~P~-~P~~P~~ 58 (82)
T PF13807_consen 8 RLQRDVEIKRELYETLLQRYEEARL---SK-ASNVSNVR-IVDPAIVPD-KPVSPKR 58 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HH-hccCCCce-eccccccCC-CCCCCcH
Confidence 4555555555555555444333111 11 33444554 677766654 3444444
No 27
>TIGR03818 MotA1 flagellar motor stator protein MotA. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.
Probab=63.14 E-value=66 Score=30.44 Aligned_cols=76 Identities=13% Similarity=0.204 Sum_probs=42.5
Q ss_pred hHhHHhhcC--c-hhhHHHhh-cCCCCcccccccccccceec--hhhHHHHHHhhHHHHHhc-C-ChhHHHHHHHHHHHH
Q 023802 166 YLTEATENN--P-EVKEIVET-FTLPTEDVKEFSTLRDFYLG--IPYGLLLTLGGFISFMVT-G-SIPAIRFGVILGGTL 237 (277)
Q Consensus 166 yl~~aaens--p-~vK~i~et-~~~~~e~~~~~s~mHDFclg--ipYg~LVa~GGiiGY~ka-G-Si~SL~aGl~fG~lL 237 (277)
.|.+.++.. | .++|+.|+ .....+...+.+++-+-+=+ ..+|.+=++-|+++-+.+ . +...|..|+ +.+|
T Consensus 129 gl~l~vdG~~~~~~i~~iLe~ei~~~~~~~~~~~~v~~~~g~~aPa~GiiGtvlGLI~~l~~l~~dp~~lG~~i--A~Al 206 (282)
T TIGR03818 129 YLRLMVMGNMNPHELEALMEEEIETHHHELLKPAHALQKVADALPGFGIVAAVLGVVITMGSIDGPPEVLGVLI--AAAL 206 (282)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHHhcCCCHHHHHHHH--HHHH
Confidence 566676655 4 89999988 33434444444444333322 356777777777776666 3 555444433 3444
Q ss_pred HHHHHH
Q 023802 238 LALSIA 243 (277)
Q Consensus 238 l~aGyg 243 (277)
+.--||
T Consensus 207 v~TlyG 212 (282)
T TIGR03818 207 VGTFLG 212 (282)
T ss_pred HHHHHH
Confidence 444444
No 28
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=62.89 E-value=17 Score=32.65 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=27.2
Q ss_pred HhhHHHHHhcCCh----hHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 023802 212 LGGFISFMVTGSI----PAIRFGVILGGTLLALSIASLRSHKKGK 252 (277)
Q Consensus 212 ~GGiiGY~kaGSi----~SL~aGl~fG~lLl~aGygSLk~~k~gk 252 (277)
.||++|.+..+.. ..=+.+++..++|..++|-+|+.|++++
T Consensus 12 ~ggl~g~LlG~k~~r~~~g~a~~~Gg~AalG~lA~~ayq~~q~~~ 56 (188)
T PF04391_consen 12 AGGLLGMLLGGKKGRKMGGGALKYGGLAALGGLAYKAYQNWQQNQ 56 (188)
T ss_pred HHHHHHHHhCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3899998876543 4444455555667777788888887654
No 29
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=62.82 E-value=7.7 Score=35.94 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=20.7
Q ss_pred HHhhHHHHHhcCChhHHHHHHHHHHH
Q 023802 211 TLGGFISFMVTGSIPAIRFGVILGGT 236 (277)
Q Consensus 211 a~GGiiGY~kaGSi~SL~aGl~fG~l 236 (277)
.+||++||+. |.++..++|+++|-+
T Consensus 7 i~g~~~G~~~-~g~~Ga~~G~~~Gh~ 31 (267)
T PRK09430 7 ILGFAFGFLF-GGFFGALLGLLIGHM 31 (267)
T ss_pred HHHHHHHHHH-hhHHHHHHHHHHHhH
Confidence 5799999999 558888888888876
No 30
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=62.09 E-value=1.2e+02 Score=27.34 Aligned_cols=20 Identities=35% Similarity=0.532 Sum_probs=12.8
Q ss_pred hhhHhHHhhcCc-hhhHHHhh
Q 023802 164 KKYLTEATENNP-EVKEIVET 183 (277)
Q Consensus 164 keyl~~aaensp-~vK~i~et 183 (277)
+..+..+.+++. .|.++|+.
T Consensus 300 ~~~l~~~v~~~~~~i~~~V~~ 320 (367)
T PF04286_consen 300 ENLLERIVESNHIDIGEIVEE 320 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445556666655 77777765
No 31
>PRK13895 conjugal transfer protein TraM; Provisional
Probab=61.66 E-value=72 Score=28.27 Aligned_cols=39 Identities=23% Similarity=0.451 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHH
Q 023802 95 KESEEAWKQTLAAFREQAIKMQSVSQEAYEIYS-KRATAILKET 137 (277)
Q Consensus 95 ees~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys-~ka~~vL~et 137 (277)
++++++=+.+|++|||+ |++++.+ |..++ +||-.+|.-+
T Consensus 38 ees~kAQq~mL~~Fkee---lE~iasr-W~~dak~KAEkiLnaa 77 (144)
T PRK13895 38 QDSAKAQQEMLDQFKEE---LESIASR-WGDDAKEKAERILNAA 77 (144)
T ss_pred HhhHHHHHHHHHHHHHH---HHHHHHH-HhHHHHHHHHHHHHHH
Confidence 45777778899999966 5666665 44444 5676676644
No 32
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=61.45 E-value=43 Score=31.65 Aligned_cols=107 Identities=19% Similarity=0.213 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHH--hh--hhh--hhhHhHHhhcCc--hhhHHHhh-cCCCCcccccccccccceec--
Q 023802 135 KETAEQLKIEAEKARKDLTVVAKE--LS--EDG--KKYLTEATENNP--EVKEIVET-FTLPTEDVKEFSTLRDFYLG-- 203 (277)
Q Consensus 135 ~etse~L~iqa~ka~~~L~~~ake--~~--e~g--keyl~~aaensp--~vK~i~et-~~~~~e~~~~~s~mHDFclg-- 203 (277)
+|+-++|-.-+++||++ +.+|=| +- ++- +..|.++.+..+ .|+||.|+ .....+.....+++-+-+=+
T Consensus 80 ~~~i~~l~~la~~aRk~-GlLaLE~~~~~~~d~Fl~~gl~lvvDG~~~~~i~~iLe~ei~~~~~r~~~~~~v~~~~g~~A 158 (271)
T PRK06926 80 EELVQTFVSLSEKARRE-GLLSLEAELEEVKDPFIKKGLLLAIDGWEPETIRDIMMAEIAAMEERHRKGRRIFEKAGEYA 158 (271)
T ss_pred HHHHHHHHHHHHHHHhc-CHHHHHhhhcCCCChHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 34666677777888765 344422 21 122 455667776655 99999998 55555566666666666543
Q ss_pred hhhHHHHHHhhHHHHHhc-CChhHHHHHHHHHHHHHHHHHHH
Q 023802 204 IPYGLLLTLGGFISFMVT-GSIPAIRFGVILGGTLLALSIAS 244 (277)
Q Consensus 204 ipYg~LVa~GGiiGY~ka-GSi~SL~aGl~fG~lLl~aGygS 244 (277)
..||.+=++-|++.-+.+ .+...|..|+ +.+|+.-=||+
T Consensus 159 PafGmiGTviGLI~mL~~L~dp~~IG~~m--AvAlvtTlYGv 198 (271)
T PRK06926 159 PAWGMIGTLVGLVLMLKNLNDPSTLGPNM--AIALLTTLYGT 198 (271)
T ss_pred hHHHHHHHHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHHH
Confidence 467888888888887777 5544443333 33334444443
No 33
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=61.27 E-value=1e+02 Score=26.24 Aligned_cols=75 Identities=13% Similarity=0.161 Sum_probs=46.5
Q ss_pred hhhhcChhhHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 023802 88 SEIKASAKESEEAWKQTLAAFREQAIKMQSVSQ-EAYEIYSK-------RATAILKETAEQLKIEAEKARKDLTVVAKEL 159 (277)
Q Consensus 88 ~~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s~-eaY~vys~-------ka~~vL~etse~L~iqa~ka~~~L~~~ake~ 159 (277)
++...+.++..+..++.|.+-+.+|..|-.-.. +|-.++.+ .+..++..+-+++..+.++|..+|...+.++
T Consensus 54 e~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~e~~~a~~el~~e~~~l 133 (167)
T PRK14475 54 QRLREEAQALLADVKAEREEAERQAAAMLAAAKADARRMEAEAKEKLEEQIKRRAEMAERKIAQAEAQAAADVKAAAVDL 133 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556667777888888888888777644332 33333222 3445666666667777777777776655555
Q ss_pred hhh
Q 023802 160 SED 162 (277)
Q Consensus 160 ~e~ 162 (277)
..+
T Consensus 134 Av~ 136 (167)
T PRK14475 134 AAQ 136 (167)
T ss_pred HHH
Confidence 543
No 34
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=61.01 E-value=1e+02 Score=25.99 Aligned_cols=74 Identities=11% Similarity=0.149 Sum_probs=47.3
Q ss_pred hhhhcChhhHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHH-------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 023802 88 SEIKASAKESEEAWKQTLAAFREQAIKMQSVSQEA-YEIY-------SKRATAILKETAEQLKIEAEKARKDLTVVAKEL 159 (277)
Q Consensus 88 ~~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s~ea-Y~vy-------s~ka~~vL~etse~L~iqa~ka~~~L~~~ake~ 159 (277)
++...+.++.++..++.|...+.++..+..-.++. -..+ -+.|..++.++..++..+.++|..+|..-+..+
T Consensus 52 ~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~~i~~l 131 (164)
T PRK14471 52 EEARKEMQNLQADNERLLKEARAERDAILKEAREIKEKMIADAKEEAQVEGDKMIEQAKASIESEKNAAMAEIKNQVANL 131 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566777788888888888877776544332 2222 345666777777777777777777776554444
Q ss_pred hh
Q 023802 160 SE 161 (277)
Q Consensus 160 ~e 161 (277)
+.
T Consensus 132 a~ 133 (164)
T PRK14471 132 SV 133 (164)
T ss_pred HH
Confidence 43
No 35
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=59.94 E-value=96 Score=32.84 Aligned_cols=74 Identities=22% Similarity=0.327 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcCchhhHHHhhcCCCCcccccccccccceech
Q 023802 125 IYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEVKEIVETFTLPTEDVKEFSTLRDFYLGI 204 (277)
Q Consensus 125 vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaensp~vK~i~et~~~~~e~~~~~s~mHDFclgi 204 (277)
+-++-+-+=|++..|-.+...+.+++|+...|+|.-++=+. | |..+++.. |+|-
T Consensus 266 Li~~~s~e~lk~~~el~~klsea~~kd~ekKA~Eyee~vrK----A------------------EE~qK~mg----CvgK 319 (593)
T PRK15374 266 IVGKNTEESLQNDLALFNALQEGRQAEMEKKSAEFQEETRK----A------------------EETNRIMG----CIGK 319 (593)
T ss_pred HHhhhhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H------------------HHHHHHHh----HHHH
Confidence 44555555566666666666777777777777776653332 1 23444433 8999
Q ss_pred hhHHHHHHhhHHHHHhcCCh
Q 023802 205 PYGLLLTLGGFISFMVTGSI 224 (277)
Q Consensus 205 pYg~LVa~GGiiGY~kaGSi 224 (277)
++|.++.+-|++.-+++|-.
T Consensus 320 IlG~vitaVsvvAAvfTGGA 339 (593)
T PRK15374 320 VLGALLTIVSVVAAVFTGGA 339 (593)
T ss_pred HHHHHHHHHHHHHHHHhccH
Confidence 99999999999988888655
No 36
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=59.35 E-value=57 Score=22.67 Aligned_cols=63 Identities=19% Similarity=0.141 Sum_probs=40.3
Q ss_pred HHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHHHH-HHhhCCCC--chhHHHHHHHHHHHHHH
Q 023802 207 GLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASL-RSHKKGKT--SPVALKGQAGQRVVYFT 270 (277)
Q Consensus 207 g~LVa~GGiiGY~kaGSi~SL~aGl~fG~lLl~aGygSL-k~~k~gk~--s~l~L~~SavLAavm~~ 270 (277)
|.+....|++-+..-..... ....++|..++..|...+ ..+++.++ .+.+....+++..+++.
T Consensus 3 Gil~iv~Gi~~l~~p~~~~~-~~~~i~g~~~i~~Gi~~l~~~~~~~~~~~~~~~~l~~gi~~i~~Gi 68 (72)
T PF03729_consen 3 GILFIVLGILLLFNPDASLA-ALAIILGIWLIISGIFQLISAFRRRKGSKGWWWSLLSGILSIVLGI 68 (72)
T ss_pred HHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHH
Confidence 56777778887777765554 445888999888888766 33443322 45555566665555543
No 37
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=58.03 E-value=1.2e+02 Score=26.48 Aligned_cols=39 Identities=13% Similarity=0.201 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhH
Q 023802 129 RATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYL 167 (277)
Q Consensus 129 ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl 167 (277)
.|..++.++.++=+.+.+.++.+...-++.+-++.++-+
T Consensus 71 EA~~Ii~~A~~~a~~~~~ea~~eA~~ea~r~~~~A~~~I 109 (154)
T PRK06568 71 LRSQMIEESNEVTKKIIQEKTKEIEEFLEHKKSDAIQLI 109 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444333
No 38
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=57.92 E-value=1.9e+02 Score=28.28 Aligned_cols=68 Identities=22% Similarity=0.321 Sum_probs=36.7
Q ss_pred hHHHHHHHHhhhhhhhhHhHHhhcCchhhHHHhhcCCCCcccccccccccceechhhHHHHHHhhHHHHHhcCChhHHHH
Q 023802 150 KDLTVVAKELSEDGKKYLTEATENNPEVKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRF 229 (277)
Q Consensus 150 ~~L~~~ake~~e~gkeyl~~aaensp~vK~i~et~~~~~e~~~~~s~mHDFclgipYg~LVa~GGiiGY~kaGSi~SL~a 229 (277)
+++..++.-+.++..+.+...-|-||++ +.+..+. .-+|+++.++.+|-=+.++.-|-+-+..+
T Consensus 68 ~~~~~~~s~~~~~~~~~~~al~D~s~P~------------~~~~~~i----~~tF~~ssIlLl~~Siss~iG~YiLapl~ 131 (299)
T PF05884_consen 68 NQLQSTASQFKPQSNEIVNALQDTSPPE------------KLSTSSI----VETFSWSSILLLGFSISSFIGGYILAPLF 131 (299)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhcCCCc------------CCCchhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666677777777777777431 2222222 22334555555555555555555555555
Q ss_pred HHHH
Q 023802 230 GVIL 233 (277)
Q Consensus 230 Gl~f 233 (277)
|.++
T Consensus 132 ~~i~ 135 (299)
T PF05884_consen 132 GIIF 135 (299)
T ss_pred HHHh
Confidence 5444
No 39
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=57.48 E-value=30 Score=30.03 Aligned_cols=41 Identities=24% Similarity=0.291 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023802 101 WKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLK 142 (277)
Q Consensus 101 Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~ 142 (277)
=|+|||+|-.|+. =+.++.+-++.+++|=..-|+++-++..
T Consensus 52 mK~Tld~F~~Q~~-~~~lte~q~e~lt~rF~~aL~~~L~~yq 92 (128)
T PRK13717 52 MKQTVDAFFDSAS-QKQLSEAQSKALSARFNTALEASLQAWQ 92 (128)
T ss_pred hHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999997 5789999999999998887777755444
No 40
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=57.26 E-value=50 Score=31.99 Aligned_cols=57 Identities=23% Similarity=0.242 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcCchhhHHHhhcCCCC
Q 023802 130 ATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEVKEIVETFTLPT 188 (277)
Q Consensus 130 a~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaensp~vK~i~et~~~~~ 188 (277)
.+.++.+........++||++++.+++.+...+|+--+++- ||..|++++.+....+
T Consensus 87 ~~~~~~~~~~~~i~~~~~a~~~ia~~~a~~i~dg~~IlTh~--~S~~v~~~l~~A~~~~ 143 (301)
T COG1184 87 RRQSLIKAAQEFIDRVEKAKERIAEIGAERIHDGDVILTHS--FSKTVLEVLKTAADRG 143 (301)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEec--CcHHHHHHHHHhhhcC
Confidence 66678888889999999999999999999999999877776 6669999998877654
No 41
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=55.55 E-value=93 Score=28.24 Aligned_cols=39 Identities=8% Similarity=-0.016 Sum_probs=16.8
Q ss_pred HHHhcCChhHHHHH-HHHHHHHHHHHHHHHHHhhCCCCchhH
Q 023802 217 SFMVTGSIPAIRFG-VILGGTLLALSIASLRSHKKGKTSPVA 257 (277)
Q Consensus 217 GY~kaGSi~SL~aG-l~fG~lLl~aGygSLk~~k~gk~s~l~ 257 (277)
-|+.......+..- ++.+.+|+..|+. +.+-.+.+.+..
T Consensus 157 py~~~~~~~~~~~s~~~~~~aL~~~G~~--~a~~~~~~~~~~ 196 (218)
T cd02432 157 AILLAPAAWKVPVTIIATLLALALTGYV--SARLGGASVLRA 196 (218)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHH--HHHHCCCCHHHH
Confidence 45443222233333 3344455555554 444445555433
No 42
>PRK12482 flagellar motor protein MotA; Provisional
Probab=55.50 E-value=1.2e+02 Score=29.06 Aligned_cols=70 Identities=17% Similarity=0.185 Sum_probs=42.1
Q ss_pred Cc-hhhHHHhh-cCCCCcccccccccccceec--hhhHHHHHHhhHHHHHhc-CChhHHHHHHHHHHHHHHHHHHH
Q 023802 174 NP-EVKEIVET-FTLPTEDVKEFSTLRDFYLG--IPYGLLLTLGGFISFMVT-GSIPAIRFGVILGGTLLALSIAS 244 (277)
Q Consensus 174 sp-~vK~i~et-~~~~~e~~~~~s~mHDFclg--ipYg~LVa~GGiiGY~ka-GSi~SL~aGl~fG~lLl~aGygS 244 (277)
+| .|+||.|+ .....+.....+++-+-+=+ -.||.+=++-|++.-+.+ .+-++.+ |-..+.+|+.-=||+
T Consensus 139 d~~~i~~iLe~eie~~~~r~~~~a~v~~~~a~~aPa~GiiGtvlGLI~mL~~L~d~p~~I-G~~iAvALvtTfYGv 213 (287)
T PRK12482 139 NQHELEGILDQELDAVEEELLQPSRSLQRIAEAMPGFGICAAVLGIIITMQSIDGSIAEI-GLKVAAALVGTFLGV 213 (287)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHchHHHHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHH
Confidence 77 99999998 55545556666666665543 357777777788777776 3414433 333344444444443
No 43
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=55.50 E-value=1.4e+02 Score=25.99 Aligned_cols=38 Identities=18% Similarity=0.166 Sum_probs=15.9
Q ss_pred hhhcChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 023802 89 EIKASAKESEEAWKQTLAAFREQAIKMQSVSQEAYEIY 126 (277)
Q Consensus 89 ~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s~eaY~vy 126 (277)
.+..+-+++++.=.+.-+..++.=.+|+..-.||.++-
T Consensus 66 ~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii 103 (181)
T PRK13454 66 TITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIV 103 (181)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444333333333333345555555555443
No 44
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=54.82 E-value=36 Score=31.61 Aligned_cols=78 Identities=13% Similarity=0.021 Sum_probs=54.5
Q ss_pred cccceechhhHHHHHHhhHHHHHhcCCh--hHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHH-HHHHh
Q 023802 197 LRDFYLGIPYGLLLTLGGFISFMVTGSI--PAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVY-FTIEI 273 (277)
Q Consensus 197 mHDFclgipYg~LVa~GGiiGY~kaGSi--~SL~aGl~fG~lLl~aGygSLk~~k~gk~s~l~L~~SavLAavm-~~R~~ 273 (277)
|.|.|+++.-..++...+-.-|.|.++. .=+....+.-.+++.+.=.+|+.|.+|.+...++.+-+++|-.+ .||++
T Consensus 1 ~~~~~~~l~lTl~~y~~~~~l~~r~~~~~lnPvl~~~~~ii~~L~~~~i~Y~~Y~~g~~~l~~lLgPAtVALAvPLY~~~ 80 (226)
T TIGR00659 1 MFIIIVSLFLTLLVFFGAKKLYQRFKRPYLNPLLLTPLVLVGILLLVGIPYESYMLGGGVINDLLGPAVVALAIPLYKQL 80 (226)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhCCCHHHHHHhhHHHHHhhHHHHHHHHHHHHHhH
Confidence 5688888888888888888888888772 22333333334444444568999999999988888887777666 55554
Q ss_pred h
Q 023802 274 T 274 (277)
Q Consensus 274 ~ 274 (277)
+
T Consensus 81 ~ 81 (226)
T TIGR00659 81 P 81 (226)
T ss_pred H
Confidence 3
No 45
>PF12822 DUF3816: Protein of unknown function (DUF3816); InterPro: IPR024529 Energy-coupling factor (ECF) transporters consist of a substrate-specific component and an energy-coupling module []. The substrate-binding component is a small integral membrane protein which captures specific substrates and forms an active transporter in the presence of the energy-coupling AT module. The energy coupling module is composed of an ATPase typical of the ATP binding cassette (ABC) superfamily and a characteristic transmembrane protein. Unlike the ABC transporters, an energy coupling module can be shared between multiple different substrate-binding components. This entry represents the substrate-specific component from a number of different ECF transporters.; PDB: 3P5N_A.
Probab=53.98 E-value=49 Score=27.14 Aligned_cols=23 Identities=30% Similarity=0.677 Sum_probs=17.4
Q ss_pred cceechhhHHHHHH-hhHHHHHhc
Q 023802 199 DFYLGIPYGLLLTL-GGFISFMVT 221 (277)
Q Consensus 199 DFclgipYg~LVa~-GGiiGY~ka 221 (277)
=+++|..+|+++++ ..+++++..
T Consensus 39 ~~l~Gp~~G~~~g~i~~il~~l~~ 62 (172)
T PF12822_consen 39 GFLLGPVWGALVGFISDILSFLIF 62 (172)
T ss_dssp HTTS-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 36788888888877 889999985
No 46
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=53.22 E-value=28 Score=29.16 Aligned_cols=22 Identities=18% Similarity=0.519 Sum_probs=12.4
Q ss_pred CchhhHHHhhcCCCCccccccccc
Q 023802 174 NPEVKEIVETFTLPTEDVKEFSTL 197 (277)
Q Consensus 174 sp~vK~i~et~~~~~e~~~~~s~m 197 (277)
.|.++|-+.++.. +|..+..++
T Consensus 16 ~~t~~~A~ksi~~--~df~~~~~i 37 (118)
T PF12597_consen 16 RPTLSDAVKSIKL--SDFRNVHKI 37 (118)
T ss_pred CCcHHHHHHhcCH--HHHhHHhcC
Confidence 3477777777763 244433333
No 47
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=52.72 E-value=1.4e+02 Score=26.15 Aligned_cols=60 Identities=25% Similarity=0.289 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Q 023802 96 ESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSE 161 (277)
Q Consensus 96 es~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e 161 (277)
++.++=..+|+.||+ .|..++.+=-+---+||-.+|..+.-..+.+ +.+.+.+.++++.+
T Consensus 39 ~~~~aq~~~l~~fk~---elE~~~~~w~~dak~kAEkiL~aal~~ske~---m~~~l~e~~~~~~~ 98 (144)
T PF11657_consen 39 DSAKAQQEQLDQFKE---ELEEIASRWGEDAKEKAEKILNAALAASKEA---MNKILQESAQEIVE 98 (144)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 455566789999995 4566665555555667777777764433333 44456666666655
No 48
>PF13767 DUF4168: Domain of unknown function (DUF4168)
Probab=52.32 E-value=1e+02 Score=23.33 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHH
Q 023802 103 QTLAAFREQAIKMQSVSQEAYEIYSK 128 (277)
Q Consensus 103 q~L~~fkeqa~kmq~~s~eaY~vys~ 128 (277)
+-|++|-+-..+|+.+.+++|..-.+
T Consensus 4 ~el~~fA~A~~~ie~ir~~~~~~l~~ 29 (78)
T PF13767_consen 4 AELDQFARAVLEIEPIRQEYQQELQA 29 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999987655
No 49
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=52.10 E-value=45 Score=28.15 Aligned_cols=41 Identities=27% Similarity=0.300 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023802 101 WKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLK 142 (277)
Q Consensus 101 Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~ 142 (277)
=|+|||+|-.|+. =+++|.+-++.+.++=+..|.++-.+-+
T Consensus 39 mk~tld~F~~q~~-~~~lte~q~~~~~~rF~~~L~~~L~~yq 79 (112)
T TIGR02744 39 MKQTLDAFFDSAS-QKKLSEAQQKALLGRFNALLEAELQAWQ 79 (112)
T ss_pred cHHHHHHHHHHHh-hcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999997 5789999999999998888877755443
No 50
>PF14007 YtpI: YtpI-like protein
Probab=51.96 E-value=61 Score=26.27 Aligned_cols=47 Identities=28% Similarity=0.346 Sum_probs=34.7
Q ss_pred echhhHHHHHHhhHHHHHhcCChhHHHHHHHH---HHHHHHHHHHHHHHh
Q 023802 202 LGIPYGLLLTLGGFISFMVTGSIPAIRFGVIL---GGTLLALSIASLRSH 248 (277)
Q Consensus 202 lgipYg~LVa~GGiiGY~kaGSi~SL~aGl~f---G~lLl~aGygSLk~~ 248 (277)
..|.-|.++.+-|+.=++..+|+..++.|.+| |..-+.+|+-++|-+
T Consensus 35 a~ialG~fl~~fgiNQ~~~~~st~~~iV~~ifl~lG~~n~~~G~r~y~hy 84 (89)
T PF14007_consen 35 ANIALGIFLILFGINQMFLFGSTVRLIVGAIFLVLGLFNLFAGIRAYRHY 84 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 35778899999999999999999998888665 444444555544443
No 51
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=51.62 E-value=22 Score=30.25 Aligned_cols=42 Identities=24% Similarity=0.236 Sum_probs=20.9
Q ss_pred ccccccccceechhhHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 023802 192 KEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKT 253 (277)
Q Consensus 192 ~~~s~mHDFclgipYg~LVa~GGiiGY~kaGSi~SL~aGl~fG~lLl~aGygSLk~~k~gk~ 253 (277)
.+..-.|||--+- +..+++|+++|.+++++ +.+|.+.|..|.
T Consensus 53 ~~~ql~h~fs~~~-------------------i~~Ii~gv~aGvIg~Il-li~y~irR~~Kk 94 (122)
T PF01102_consen 53 ERSQLVHRFSEPA-------------------IIGIIFGVMAGVIGIIL-LISYCIRRLRKK 94 (122)
T ss_dssp ---SSSSSSS-TC-------------------HHHHHHHHHHHHHHHHH-HHHHHHHHHS--
T ss_pred CCcccccCccccc-------------------eeehhHHHHHHHHHHHH-HHHHHHHHHhcc
Confidence 5556688886552 34445666666655443 455556655443
No 52
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=51.44 E-value=81 Score=25.88 Aligned_cols=49 Identities=20% Similarity=0.360 Sum_probs=33.5
Q ss_pred echhhHHHHHHhhHHHHHh---cCChh-HHHHHHHHHHHHHHHHHHHHHHhhC
Q 023802 202 LGIPYGLLLTLGGFISFMV---TGSIP-AIRFGVILGGTLLALSIASLRSHKK 250 (277)
Q Consensus 202 lgipYg~LVa~GGiiGY~k---aGSi~-SL~aGl~fG~lLl~aGygSLk~~k~ 250 (277)
+|+.+|+++.+-.++.|+. ..+.+ .-..|.+...+.++.-+.+.+.+|+
T Consensus 2 ~g~i~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~R~ 54 (163)
T PF13858_consen 2 YGLIFGLILILFFLLSYLLGMHDIKYPSNSWLGILSMVITIIFIYFAIRRYRK 54 (163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccccccHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667788888888888877 43333 4455666666666667788888884
No 53
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=51.42 E-value=1.3e+02 Score=24.51 Aligned_cols=74 Identities=16% Similarity=0.176 Sum_probs=45.2
Q ss_pred hhhhcChhhHHHHHHHHHHHHHHHHHHhhhhhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 023802 88 SEIKASAKESEEAWKQTLAAFREQAIKMQSVSQEAY--------EIYSKRATAILKETAEQLKIEAEKARKDLTVVAKEL 159 (277)
Q Consensus 88 ~~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s~eaY--------~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~ 159 (277)
++...+.++..+.|++.|..-+.+|..+-.-.++-. +.-.+.+..++.++-+++..+.++|..+|..-+..+
T Consensus 39 ~~~~~ea~~~~~e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~~~~~~a~~~i~~e~~~a~~~l~~~~~~l 118 (147)
T TIGR01144 39 ERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSEILEEAKAEAREEREKIKAQARAEIEAEKEQAREELRKQVADL 118 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555667778888888888888776654433322 222334455566666666666677776666555555
Q ss_pred hh
Q 023802 160 SE 161 (277)
Q Consensus 160 ~e 161 (277)
..
T Consensus 119 A~ 120 (147)
T TIGR01144 119 SV 120 (147)
T ss_pred HH
Confidence 44
No 54
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=51.11 E-value=17 Score=27.66 Aligned_cols=25 Identities=16% Similarity=0.127 Sum_probs=13.0
Q ss_pred cccccccccccceechhhHHHHHHh
Q 023802 189 EDVKEFSTLRDFYLGIPYGLLLTLG 213 (277)
Q Consensus 189 e~~~~~s~mHDFclgipYg~LVa~G 213 (277)
.++++...++.+.+.+..++++++.
T Consensus 55 ~~l~r~~~~~~~k~~~i~~~iv~~~ 79 (89)
T PF00957_consen 55 KKLKRKMWWRNYKLYIIIIIIVIII 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHhhhhhh
Confidence 3466666666665555444444433
No 55
>PF12291 DUF3623: Protein of unknown function (DUF3623); InterPro: IPR017496 This uncharacterised protein family was identified, by the method of partial phylogenetic profiling, as having a matching phylogenetic distribution to that of the photosynthetic reaction centre of the alpha-proteobacterial type. It is nearly always encoded near other photosynthesis-related genes, including puhA.
Probab=51.05 E-value=96 Score=29.62 Aligned_cols=58 Identities=19% Similarity=0.352 Sum_probs=41.6
Q ss_pred cccceechhhHHHH--HHhhHHHHHhcCChh-HHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 023802 197 LRDFYLGIPYGLLL--TLGGFISFMVTGSIP-AIRFGVILGGTLLALSIASLRSHKKGKTS 254 (277)
Q Consensus 197 mHDFclgipYg~LV--a~GGiiGY~kaGSi~-SL~aGl~fG~lLl~aGygSLk~~k~gk~s 254 (277)
|-|+++-+.|+.++ ++-|++-|+-..--- .-...++.+..++++|+..+-...+-.+.
T Consensus 1 M~~~~~p~l~av~~WWfsTG~IL~l~~~~~rg~~~~s~~~~t~l~~~al~gl~~s~~d~s~ 61 (259)
T PF12291_consen 1 MSSYWLPALYAVFVWWFSTGAILWLVRLPDRGTFRWSMLLATPLLAAALWGLAASSHDTSV 61 (259)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHHccCccH
Confidence 67888999999998 777777777642222 55667777778888888777776665544
No 56
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=50.62 E-value=1.1e+02 Score=28.05 Aligned_cols=37 Identities=22% Similarity=0.396 Sum_probs=20.8
Q ss_pred hhhHHHHHHhhHHHH---------HhcCC-hhHHHHHHHHHHHHHHH
Q 023802 204 IPYGLLLTLGGFISF---------MVTGS-IPAIRFGVILGGTLLAL 240 (277)
Q Consensus 204 ipYg~LVa~GGiiGY---------~kaGS-i~SL~aGl~fG~lLl~a 240 (277)
..||++|.+.+++.+ +..++ ..++.+|+++|.+.+.+
T Consensus 16 ~~~G~~vl~ta~la~~s~~~a~~~~~~~~~~~ai~~glvwgl~I~~l 62 (301)
T PF14362_consen 16 AGIGAAVLFTALLAGLSGGYALYTVFGGPVWAAIPFGLVWGLVIFNL 62 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 345666555444432 33344 67777777777775443
No 57
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=50.46 E-value=1e+02 Score=26.65 Aligned_cols=35 Identities=34% Similarity=0.413 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhh
Q 023802 132 AILKETAEQLKIEAEKARKDLTVVAKELSEDGKKY 166 (277)
Q Consensus 132 ~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkey 166 (277)
.-+.+--++|+.+.++++.|+..+-|....--+||
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455566677777777777766666655554554
No 58
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=49.92 E-value=62 Score=26.21 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=21.4
Q ss_pred HHHHHHHHhhCCCCchhHHHHHHHHHHHH
Q 023802 240 LSIASLRSHKKGKTSPVALKGQAGQRVVY 268 (277)
Q Consensus 240 aGygSLk~~k~gk~s~l~L~~SavLAavm 268 (277)
+.+..|+..++||..|--+.+-.++.+++
T Consensus 45 ~~i~~y~eir~gK~~W~~fg~~~vVGvvL 73 (87)
T PF11190_consen 45 AAISTYNEIRDGKKTWGDFGATVVVGVVL 73 (87)
T ss_pred HHHHHHHHHHcCcccHHHhhhHHHHHHHH
Confidence 34677888899999987777666666555
No 59
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=49.52 E-value=35 Score=29.37 Aligned_cols=52 Identities=17% Similarity=0.405 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhh
Q 023802 97 SEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSED 162 (277)
Q Consensus 97 s~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~ 162 (277)
-+...+.-+++.|+| |.++|.+ |.|+|-|+ |+++.||+.+||....++...+
T Consensus 41 ~~~~l~~Ei~~l~~E---~~~iS~q--DeFAkwaK---------l~Rk~~kl~~el~~~~~~~~~~ 92 (161)
T PF04420_consen 41 EQRQLRKEILQLKRE---LNAISAQ--DEFAKWAK---------LNRKLDKLEEELEKLNKSLSSE 92 (161)
T ss_dssp HHHHHHHHHHHHHHH---HTTS-TT--TSHHHHHH---------HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH---HHcCCcH--HHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666667754 4555554 47777754 7999999999999888777653
No 60
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=48.29 E-value=1.8e+02 Score=25.02 Aligned_cols=74 Identities=23% Similarity=0.255 Sum_probs=45.8
Q ss_pred hhhhcChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 023802 88 SEIKASAKESEEAWKQTLAAFREQAIKMQSVSQEAYEIYS--------KRATAILKETAEQLKIEAEKARKDLTVVAKEL 159 (277)
Q Consensus 88 ~~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys--------~ka~~vL~etse~L~iqa~ka~~~L~~~ake~ 159 (277)
++...+.++..+.+++.|...+.++..+..-.++.-+.-. +.|..++.++-.++..+.++|.++|..-+.++
T Consensus 62 e~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~ek~~a~~~l~~ei~~l 141 (173)
T PRK13453 62 EQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIETAQSEINSQKERAIADINNQVSEL 141 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566677788999999999888887665554443222 23444555555566666666666665544444
Q ss_pred hh
Q 023802 160 SE 161 (277)
Q Consensus 160 ~e 161 (277)
+.
T Consensus 142 A~ 143 (173)
T PRK13453 142 SV 143 (173)
T ss_pred HH
Confidence 43
No 61
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=48.14 E-value=1.2e+02 Score=26.98 Aligned_cols=57 Identities=18% Similarity=0.327 Sum_probs=35.2
Q ss_pred ccccceechhhHHHHHHhhHHHHHh----cCChhHHHHHHHHHHH---HHHHHHHHH--HHhhCCC
Q 023802 196 TLRDFYLGIPYGLLLTLGGFISFMV----TGSIPAIRFGVILGGT---LLALSIASL--RSHKKGK 252 (277)
Q Consensus 196 ~mHDFclgipYg~LVa~GGiiGY~k----aGSi~SL~aGl~fG~l---Ll~aGygSL--k~~k~gk 252 (277)
+..=+++.+.|++..-+|+++|+.. .+.......|++.|.. ++++++.-+ ..++++.
T Consensus 229 ~~~~~~~~~~~sl~~piG~~ig~~~~~~~~~~~~~~~~~~~~a~aaG~~lyv~~~ell~~~~~~~~ 294 (317)
T PF02535_consen 229 KRKALLLLLLFSLSTPIGALIGIAISNSGSSSSSDIVSGILLAFAAGTFLYVAFVELLPEEFHNKH 294 (317)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3344458899999999999999999 3444444455544433 334444322 4555555
No 62
>KOG2580 consensus Mitochondrial import inner membrane translocase, subunit TIM44 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.08 E-value=66 Score=33.07 Aligned_cols=53 Identities=17% Similarity=0.400 Sum_probs=33.4
Q ss_pred hhhcChhhHHHHHHHHHHHHHHHHHHhhhhhH-----HHHH---HHHHHHHHHHHHHHHHHH
Q 023802 89 EIKASAKESEEAWKQTLAAFREQAIKMQSVSQ-----EAYE---IYSKRATAILKETAEQLK 142 (277)
Q Consensus 89 ~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s~-----eaY~---vys~ka~~vL~etse~L~ 142 (277)
+...|-+-.+| -+.+...||+.+.+++.... ++|+ -|.+++-.+|+.+..+|+
T Consensus 71 n~r~E~~knkE-lqe~iK~lkd~a~~L~esda~kkaR~k~~~~e~~t~~~s~~~kk~~~e~~ 131 (459)
T KOG2580|consen 71 NVRAELDKNKE-LQESIKKLKDRAGELEESDALKKARTKYETAESETQASSEVLKKKLGELK 131 (459)
T ss_pred HHHHHHhhCHH-HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 33333333333 57788999999999987642 3443 466777777777764443
No 63
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=47.93 E-value=9.7 Score=37.14 Aligned_cols=21 Identities=24% Similarity=0.665 Sum_probs=18.1
Q ss_pred ceechhhHHHHHHhhHHHHHh
Q 023802 200 FYLGIPYGLLLTLGGFISFMV 220 (277)
Q Consensus 200 FclgipYg~LVa~GGiiGY~k 220 (277)
=..||.-+++|++||++||+-
T Consensus 368 aIaGIsvavvvvVgglvGfLc 388 (397)
T PF03302_consen 368 AIAGISVAVVVVVGGLVGFLC 388 (397)
T ss_pred ceeeeeehhHHHHHHHHHHHh
Confidence 356899999999999999973
No 64
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=47.75 E-value=1.8e+02 Score=26.43 Aligned_cols=69 Identities=14% Similarity=0.092 Sum_probs=47.3
Q ss_pred cceechhhHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHH----HHHHHhhCCCCchhHHHHHHHHHHHHHH
Q 023802 199 DFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSI----ASLRSHKKGKTSPVALKGQAGQRVVYFT 270 (277)
Q Consensus 199 DFclgipYg~LVa~GGiiGY~kaGSi~SL~aGl~fG~lLl~aGy----gSLk~~k~gk~s~l~L~~SavLAavm~~ 270 (277)
+||..+-+|.+..+.|++=++..+ ..++..=.++|..+++.|. .+++..+++ .+.+...+.+++.+.++
T Consensus 74 ~~W~lll~Gil~i~~gil~~~~~~-~~~~~l~~lia~~~i~~GI~ri~~~~~~~~~~--G~~w~ii~Gvl~ii~g~ 146 (185)
T COG3247 74 SFWPLLLSGILSILLGILAGFNPG-LGALVLTYLIAIWFIASGILRIVVAFRLRSLP--GWWWMIISGVLGIIAGL 146 (185)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHccccC--CcHHHHHHHHHHHHHHH
Confidence 788888899888887777666666 5566666777777777776 344444444 56666767766666554
No 65
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=46.75 E-value=1.6e+02 Score=24.36 Aligned_cols=13 Identities=46% Similarity=0.549 Sum_probs=5.3
Q ss_pred HHHHHHhhHHHHH
Q 023802 207 GLLLTLGGFISFM 219 (277)
Q Consensus 207 g~LVa~GGiiGY~ 219 (277)
|+++...|++-|+
T Consensus 40 Gall~~~gii~fv 52 (145)
T PF09925_consen 40 GALLLGLGIILFV 52 (145)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
No 66
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=46.72 E-value=2.3e+02 Score=25.76 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=12.3
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHhhCCCCch
Q 023802 226 AIRFGVIL--GGTLLALSIASLRSHKKGKTSP 255 (277)
Q Consensus 226 SL~aGl~f--G~lLl~aGygSLk~~k~gk~s~ 255 (277)
.+...+++ +.+|+.+|+. +.+-.+.+.+
T Consensus 171 ~~~~s~~~~~~~~L~~~G~~--~~~~~~~~~~ 200 (225)
T cd02434 171 VFALSILIFVAFTLFLLGSF--KSKLYNGKWI 200 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHhcCCchH
Confidence 34434433 4444445554 4444444443
No 67
>PF03203 MerC: MerC mercury resistance protein
Probab=46.61 E-value=1.4e+02 Score=24.21 Aligned_cols=9 Identities=0% Similarity=-0.112 Sum_probs=3.8
Q ss_pred hhCCCCchh
Q 023802 248 HKKGKTSPV 256 (277)
Q Consensus 248 ~k~gk~s~l 256 (277)
||+.++.++
T Consensus 59 ~r~h~~~~~ 67 (116)
T PF03203_consen 59 YRRHRRWLP 67 (116)
T ss_pred HhhccchHH
Confidence 444444433
No 68
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=45.71 E-value=11 Score=37.62 Aligned_cols=28 Identities=25% Similarity=0.282 Sum_probs=23.2
Q ss_pred ccceechhhHHHHHHhhHHHHHhcCChh
Q 023802 198 RDFYLGIPYGLLLTLGGFISFMVTGSIP 225 (277)
Q Consensus 198 HDFclgipYg~LVa~GGiiGY~kaGSi~ 225 (277)
+=+|+-+.+-+||++||++||+.+-+.+
T Consensus 302 ~~~c~~~~i~~lL~ig~~~gFv~AttKp 329 (387)
T PF12751_consen 302 FASCIYLSILLLLVIGFAIGFVFATTKP 329 (387)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcCcc
Confidence 4478888888899999999999987655
No 69
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=44.51 E-value=66 Score=25.67 Aligned_cols=42 Identities=24% Similarity=0.195 Sum_probs=26.4
Q ss_pred HHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 023802 208 LLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTS 254 (277)
Q Consensus 208 ~LVa~GGiiGY~kaGSi~SL~aGl~fG~lLl~aGygSLk~~k~gk~s 254 (277)
+.++++.++|++..- ...|+++|.++..++.+ ++-+|+|+..
T Consensus 24 i~~~~~~~~Gi~~~~----~l~g~~lg~~~~~~~~~-lrr~K~g~~~ 65 (95)
T TIGR02762 24 LPGATLFGIGILSGK----ALIGLILGAAVMLIWKR-LRRIKGGEGE 65 (95)
T ss_pred HHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHH-HHHHHcCCCh
Confidence 444555566665532 24677777766634444 9999999866
No 70
>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tim proteins.
Probab=44.42 E-value=1.1e+02 Score=30.54 Aligned_cols=50 Identities=20% Similarity=0.294 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHhhhh-----hHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh
Q 023802 100 AWKQTLAAFREQAIKMQSV-----SQEAYEIY-------SKRATAILKETAEQLKIEAEKAR 149 (277)
Q Consensus 100 ~Wkq~L~~fkeqa~kmq~~-----s~eaY~vy-------s~ka~~vL~etse~L~iqa~ka~ 149 (277)
+||+-+.+|++++.||+.- -.|||+-- |..+...|+.|.+.+..-+++|.
T Consensus 12 E~~enik~l~~~~~~~~esea~k~ar~~y~~~~~~~~~~s~~~~~~l~~~~~~v~~~~~~~~ 73 (378)
T TIGR00984 12 ELQESIKQLQDRSGKLNESDALKKARKAYEKAESGTLKSSEVVGKTLGKLGDTMKKMAHKAW 73 (378)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 5999999999999999863 24677764 45667777777777766666654
No 71
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=44.08 E-value=1.6e+02 Score=27.08 Aligned_cols=20 Identities=25% Similarity=0.429 Sum_probs=8.6
Q ss_pred ChhHHHHHHHHHHHHHHHHH
Q 023802 223 SIPAIRFGVILGGTLLALSI 242 (277)
Q Consensus 223 Si~SL~aGl~fG~lLl~aGy 242 (277)
++.....|++.|+++++.|+
T Consensus 78 ~la~~~vG~~~gal~ia~~v 97 (306)
T PF04888_consen 78 SLAAAGVGLAAGALMIADGV 97 (306)
T ss_pred HHHHHHHhHHHHHHHHHHhH
Confidence 33333444444445444443
No 72
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=43.77 E-value=3.4e+02 Score=27.04 Aligned_cols=66 Identities=17% Similarity=0.221 Sum_probs=39.6
Q ss_pred hhhhcChhhHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhHHH
Q 023802 88 SEIKASAKESEEAWKQTLAAFREQAIKMQSVSQE-AYEIYS-------KRATAILKETAEQLKIEAEKARKDLT 153 (277)
Q Consensus 88 ~~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s~e-aY~vys-------~ka~~vL~etse~L~iqa~ka~~~L~ 153 (277)
++.+.+-++.++.+++.|...|.++..+-.-.++ |-.++. +.|..++.++.++++.+.++|..+|.
T Consensus 45 e~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~~a~~elr 118 (445)
T PRK13428 45 ATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQLLRAQLTRQLR 118 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566778888888888888888776543333 222222 23444555566666666666655544
No 73
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=43.54 E-value=52 Score=34.79 Aligned_cols=51 Identities=22% Similarity=0.352 Sum_probs=29.0
Q ss_pred ceechhhHH------HHHHhhHHHHHhcCCh-----hHHHHHHHHHHHHHHHHHHHHHHhhC
Q 023802 200 FYLGIPYGL------LLTLGGFISFMVTGSI-----PAIRFGVILGGTLLALSIASLRSHKK 250 (277)
Q Consensus 200 FclgipYg~------LVa~GGiiGY~kaGSi-----~SL~aGl~fG~lLl~aGygSLk~~k~ 250 (277)
||+|+++|. .-++.|++||+.=-.. +++-.|++.|.+..+++..-|+-+++
T Consensus 56 Faigia~glak~~kg~Aala~~v~yl~~~~~~~~~~~~~~~gvfgGIi~G~i~a~l~nkf~~ 117 (648)
T PRK10255 56 FAIGVASSWSKDSAGAAALAGAVGYFVLTKAMVTINPEINMGVLAGIITGLVGGAAYNRWSD 117 (648)
T ss_pred HHHHHHHHHhcCCchHhHHHHHHHHHHHHHHHHHHhhhhchhhhhhhHHHHHHHHHHHHhcc
Confidence 888888883 4667888888764332 23345555554433333334444443
No 74
>PRK09110 flagellar motor protein MotA; Validated
Probab=43.46 E-value=1.2e+02 Score=28.77 Aligned_cols=67 Identities=12% Similarity=0.198 Sum_probs=39.9
Q ss_pred hhHhHHhh--cCc-hhhHHHhh-cCCCCcccccccccccceec--hhhHHHHHHhhHHHHHhc-C-ChhHHHHHH
Q 023802 165 KYLTEATE--NNP-EVKEIVET-FTLPTEDVKEFSTLRDFYLG--IPYGLLLTLGGFISFMVT-G-SIPAIRFGV 231 (277)
Q Consensus 165 eyl~~aae--nsp-~vK~i~et-~~~~~e~~~~~s~mHDFclg--ipYg~LVa~GGiiGY~ka-G-Si~SL~aGl 231 (277)
.++.+++. .+| .++|+.|+ .....+...+.+++-+.+-+ -.||.+-++.|++.-+.+ . +...|..|+
T Consensus 128 ~gl~l~vdgg~~~~~i~~iLe~ei~~~~~~~~~~~~v~~~~g~~aPa~GiiGtv~GLI~~l~~l~~dp~~iG~~i 202 (283)
T PRK09110 128 DYLRLMISGNMNPHEIEALMDEEIETHHHEAEVPAHALQKVADALPAFGIVAAVLGVVKTMGSIDQPPAVLGALI 202 (283)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 55667774 566 89999998 44334344444444443333 247788788888887765 2 455444433
No 75
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=42.72 E-value=2e+02 Score=24.13 Aligned_cols=73 Identities=19% Similarity=0.270 Sum_probs=44.5
Q ss_pred hhhhcChhhHHHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 023802 88 SEIKASAKESEEAWKQTLAAFREQAIKMQSVSQE--------AYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKEL 159 (277)
Q Consensus 88 ~~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s~e--------aY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~ 159 (277)
++...+.++.++.+++.|..-+.+|..+-.-..+ .=+.-.+.|..++.++-+++..+.++|..+|..-+..+
T Consensus 52 e~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a~~~L~~~i~~l 131 (164)
T PRK14473 52 EKVREQLANAKRDYEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRMLSELKSQIADL 131 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556677778888888888777776543332 22233345556666677777777777766665443333
Q ss_pred h
Q 023802 160 S 160 (277)
Q Consensus 160 ~ 160 (277)
+
T Consensus 132 a 132 (164)
T PRK14473 132 V 132 (164)
T ss_pred H
Confidence 3
No 76
>PF10310 DUF2413: Protein of unknown function (DUF2413); InterPro: IPR018814 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=42.55 E-value=84 Score=31.87 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=25.5
Q ss_pred CchhhHHHhhcCCCC--cccccccccccceechhhHHHH
Q 023802 174 NPEVKEIVETFTLPT--EDVKEFSTLRDFYLGIPYGLLL 210 (277)
Q Consensus 174 sp~vK~i~et~~~~~--e~~~~~s~mHDFclgipYg~LV 210 (277)
.|.+-+|+.|+..+- +...++-..||. +||||==-|
T Consensus 186 ~~t~T~il~tlappIs~hE~L~Ihl~HDL-~gY~~Ld~l 223 (444)
T PF10310_consen 186 LPTFTNILNTLAPPISSHERLQIHLTHDL-VGYPSLDPL 223 (444)
T ss_pred chHHHHHHHHhCCCccccceEEEEEEeec-CCCccHHHH
Confidence 667778999988773 234668889998 777764333
No 77
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=41.59 E-value=2.3e+02 Score=24.40 Aligned_cols=74 Identities=15% Similarity=0.159 Sum_probs=36.8
Q ss_pred hhhhcChhhHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 023802 88 SEIKASAKESEEAWKQTLAAFREQAIKMQSVS-QEAYEIYSK-------RATAILKETAEQLKIEAEKARKDLTVVAKEL 159 (277)
Q Consensus 88 ~~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s-~eaY~vys~-------ka~~vL~etse~L~iqa~ka~~~L~~~ake~ 159 (277)
++...+.++..+..++-|...++++..+-.-. .+|.....+ .+..++.++-+++..+.++|.++|..-+.++
T Consensus 71 e~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~~~A~~~I~~ek~~a~~~l~~~i~~l 150 (184)
T PRK13455 71 RALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLAAAEDQIASAEAAAVKAVRDRAVSV 150 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666667777777777776654432 223222211 1223444444455555555655555444444
Q ss_pred hh
Q 023802 160 SE 161 (277)
Q Consensus 160 ~e 161 (277)
+-
T Consensus 151 A~ 152 (184)
T PRK13455 151 AV 152 (184)
T ss_pred HH
Confidence 33
No 78
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=41.55 E-value=29 Score=31.42 Aligned_cols=28 Identities=18% Similarity=0.150 Sum_probs=22.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhC
Q 023802 223 SIPAIRFGVILGGTLLALSIASLRSHKK 250 (277)
Q Consensus 223 Si~SL~aGl~fG~lLl~aGygSLk~~k~ 250 (277)
+..|++.|+++-.-|++++|..||.+|.
T Consensus 159 D~~SFiGGIVL~LGv~aI~ff~~KF~ks 186 (186)
T PF05283_consen 159 DAASFIGGIVLTLGVLAIIFFLYKFCKS 186 (186)
T ss_pred chhhhhhHHHHHHHHHHHHHHHhhhccC
Confidence 4567777888878888899999998873
No 79
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.24 E-value=1.2e+02 Score=32.49 Aligned_cols=94 Identities=20% Similarity=0.208 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcCchh
Q 023802 100 AWKQTLAAFREQAIKMQSVSQEAYEIYS-KR-ATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEV 177 (277)
Q Consensus 100 ~Wkq~L~~fkeqa~kmq~~s~eaY~vys-~k-a~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaensp~v 177 (277)
.-|..|++|-|++.||+...+--=.-.+ +| -..+|...+|+||..+++.+... .+.+ .++..-.=++-+.
T Consensus 75 ~i~~~l~~v~e~v~km~~t~~~l~s~ls~~k~~t~dli~~t~~l~~e~~~le~r~-----kii~---~Fl~~fqLs~~E~ 146 (655)
T KOG3758|consen 75 EIKRRLDRVSEDVEKMANTCDKLKSNLSTSKATTQDLIQKTETLKEEAAQLELRK-----KIIN---AFLDNFQLSSEEL 146 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHH-----HHHH---HHHHhcccChHHH
Confidence 3456788888999999887654322222 22 23567777888888777655322 2222 2222333333356
Q ss_pred hHHHhhcCCCCcc----ccccccccccee
Q 023802 178 KEIVETFTLPTED----VKEFSTLRDFYL 202 (277)
Q Consensus 178 K~i~et~~~~~e~----~~~~s~mHDFcl 202 (277)
+.+.++ +...|+ +.+.-.|||.|=
T Consensus 147 ~~L~~~-g~i~e~FF~vL~rvqeIh~~~~ 174 (655)
T KOG3758|consen 147 DLLTES-GPIDEDFFKVLDRVQEIHDNCR 174 (655)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHHHHHHH
Confidence 666665 222333 367888999994
No 80
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=40.50 E-value=2.5e+02 Score=25.35 Aligned_cols=91 Identities=15% Similarity=0.233 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hHHHHHHHHhhhhhh---
Q 023802 96 ESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKAR--------KDLTVVAKELSEDGK--- 164 (277)
Q Consensus 96 es~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~--------~~L~~~ake~~e~gk--- 164 (277)
-+=+.|+++.+.+++.-.++..--++.|+...++...-|.+..++++....+.+ ..+.=.+++.|=+=.
T Consensus 99 ldp~n~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~~~~~~v~~H~af~Y~~~~yGl~~~~~~ 178 (264)
T cd01020 99 YDPETMSKVANALADALVKADPDNKKYYQANAKKFVASLKPLAAKIAELSAKYKGAPVAATEPVFDYLLDALGMKERTPK 178 (264)
T ss_pred cCHhHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEeCchHHHHHHHCCCcccCHH
Confidence 355678999999998888888888888888888877778887777777766543 245556666664311
Q ss_pred hhHhHH-hhcCc---hhhHHHhhcCC
Q 023802 165 KYLTEA-TENNP---EVKEIVETFTL 186 (277)
Q Consensus 165 eyl~~a-aensp---~vK~i~et~~~ 186 (277)
.|+... .|..| .+++|.+....
T Consensus 179 ~~~~~~~~~~~ps~~~l~~l~~~ik~ 204 (264)
T cd01020 179 GYTATTESETEPSPADIAAFQNAIKN 204 (264)
T ss_pred HHHhhhcCCCCCCHHHHHHHHHHHHh
Confidence 222222 25555 55555554443
No 81
>PRK08124 flagellar motor protein MotA; Validated
Probab=40.31 E-value=1.3e+02 Score=28.06 Aligned_cols=68 Identities=13% Similarity=0.098 Sum_probs=36.6
Q ss_pred Cc-hhhHHHhhcCC-CCcccccccccccceech--hhHHHHHHhhHHHHHhc-CChhHHHHHHHHHHHHHHHHHH
Q 023802 174 NP-EVKEIVETFTL-PTEDVKEFSTLRDFYLGI--PYGLLLTLGGFISFMVT-GSIPAIRFGVILGGTLLALSIA 243 (277)
Q Consensus 174 sp-~vK~i~et~~~-~~e~~~~~s~mHDFclgi--pYg~LVa~GGiiGY~ka-GSi~SL~aGl~fG~lLl~aGyg 243 (277)
+| +++++.|.-.. ..+...+...+-+-.-++ .+|++=++-|++.-+.+ ++. +.+++. .+.+|+.-.||
T Consensus 121 ~~~~i~~~le~~i~~~~~~~~~~~~~l~~ia~~AP~lGllGTVlGlI~~f~~l~~p-~~lg~g-Ia~ALitT~yG 193 (263)
T PRK08124 121 SPEFIRDVLEEEIEAMEERHAAGAAIFTQAGTYAPTLGVLGAVIGLIAALGNLSDI-EKLGHA-ISAAFVATLLG 193 (263)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCH-HHHHHH-HHHHHHHHHHH
Confidence 55 88888887332 222334444444443333 37777777888887766 554 444333 33333444444
No 82
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=39.72 E-value=1.1e+02 Score=32.10 Aligned_cols=57 Identities=32% Similarity=0.440 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHH---------HHHHHHHHHHHH--------------HHHHHHHHHHHHhhHHHHH
Q 023802 99 EAWKQTLAAFREQAIKMQSVSQEAYE---------IYSKRATAILKE--------------TAEQLKIEAEKARKDLTVV 155 (277)
Q Consensus 99 E~Wkq~L~~fkeqa~kmq~~s~eaY~---------vys~ka~~vL~e--------------tse~L~iqa~ka~~~L~~~ 155 (277)
|-=||.+.|+|+|.. ++-+-||+ |-=||-+.||.| .+|+||.|.|.|-+.|-.=
T Consensus 145 e~qkeLi~QLk~Ql~---dLE~~AYe~Geg~LPq~viLekQk~ilDeLr~Kl~lnl~i~~lsteelr~qVD~A~~q~VnP 221 (621)
T KOG3759|consen 145 ERQKELIKQLKEQLE---DLERTAYENGEGELPQTVILEKQKAILDELREKLELNLDIDKLSTEELRRQVDDALKQLVNP 221 (621)
T ss_pred chHHHHHHHHHHHHH---HHHHHHHhcCCCcCchHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHhCh
Confidence 445889999998865 55677887 456888888876 4678899999988777665
Q ss_pred HHH
Q 023802 156 AKE 158 (277)
Q Consensus 156 ake 158 (277)
+|+
T Consensus 222 ~k~ 224 (621)
T KOG3759|consen 222 FKE 224 (621)
T ss_pred HHH
Confidence 554
No 83
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=39.22 E-value=67 Score=30.87 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=16.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHH
Q 023802 222 GSIPAIRFGVILGGTLLALSIA 243 (277)
Q Consensus 222 GSi~SL~aGl~fG~lLl~aGyg 243 (277)
+|..=.++|+++|++-.+.+++
T Consensus 126 ~SL~LsaaG~GlgaaagvT~i~ 147 (313)
T PF05461_consen 126 GSLALSAAGIGLGAAAGVTSIS 147 (313)
T ss_pred chHHHHHhhhHHHHHhhhhHHH
Confidence 7887778899999884444443
No 84
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=38.92 E-value=2.1e+02 Score=28.83 Aligned_cols=87 Identities=18% Similarity=0.347 Sum_probs=56.8
Q ss_pred HH-HHHHHHHHHHHHHhhhhhHHHHHHHH---------------HHHHHHHHHHHHHHHHH----HHHHhhHHHHHHHHh
Q 023802 100 AW-KQTLAAFREQAIKMQSVSQEAYEIYS---------------KRATAILKETAEQLKIE----AEKARKDLTVVAKEL 159 (277)
Q Consensus 100 ~W-kq~L~~fkeqa~kmq~~s~eaY~vys---------------~ka~~vL~etse~L~iq----a~ka~~~L~~~ake~ 159 (277)
.| +++++.+|+.+..++++...+.-.|. +.+..+|++..+.|+.. .|..+..+..++++.
T Consensus 344 ~~~~~~~~~~~~r~~~l~d~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~L~~l~~~L~~~~~~~~e~i~~~l~~iak~~ 423 (470)
T TIGR00464 344 EQLAELLLLFKERLKTLKEIAELIRLFFEDKKEVDEDAFKKHLKKNVKEVLEALKKKLQALEEWTADEVKSAIKQIAEEL 423 (470)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhCCCCccCHHHHHHhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 55 77788899888888888766533332 23456677777777652 566677777778887
Q ss_pred hhhhhhhHhH------HhhcCchhhHHHhhcCC
Q 023802 160 SEDGKKYLTE------ATENNPEVKEIVETFTL 186 (277)
Q Consensus 160 ~e~gkeyl~~------aaensp~vK~i~et~~~ 186 (277)
|-++++...- -..++|++-++++.++-
T Consensus 424 g~k~k~lf~pLR~ALtG~~~GP~L~~~i~lLGk 456 (470)
T TIGR00464 424 GLKGKKVFMPLRLALTGKGHGPDLAQILELIGK 456 (470)
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHhCH
Confidence 7777764432 23566677776666543
No 85
>PF01706 FliG_C: FliG C-terminal domain; InterPro: IPR023087 The flagellar motor switch in Escherichia coli and Salmonella typhimurium regulates the direction of flagellar rotation and hence controls swimming behaviour []. The switch is a complex apparatus that responds to signals transduced by the chemotaxis sensory signalling system during chemotactic behaviour []. CheY, the chemotaxis response regulator, is believed to act directly on the switch to induce tumbles in the swimming pattern, but no physical interactions of CheY and switch proteins have yet been demonstrated. The switch complex comprises at least three proteins - FliG, FliM and FliN. It has been shown that FliG interacts with FliM, FliM interacts with itself, and FliM interacts with FliN []. Several residues within the middle third of FliG appear to be strongly involved in the FliG-FliM interaction, with residues near the N- or C-termini being less important []. Such clustering suggests that FliG-FliM interaction plays a central role in switching. Analysis of the FliG, FliM and FliN sequences shows that none are especially hydrophobic or appear to be integral membrane proteins []. This result is consistent with other evidence suggesting that the proteins may be peripheral to the membrane, possibly mounted on the basal body M ring [, ]. FliG is present in about 25 copies per flagellum. This entry represents the C-terminal domain of FliG, the structure of which is known. This domain functions specifically in motor rotation [].; PDB: 3USY_B 3USW_A 3HJL_A 3AJC_A 1LKV_X 1QC7_B.
Probab=38.75 E-value=89 Score=24.85 Aligned_cols=52 Identities=29% Similarity=0.519 Sum_probs=37.7
Q ss_pred HHhhhhhHHH----HHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHhhhhhh
Q 023802 113 IKMQSVSQEA----YEIYSKRATAILKETAEQL----KIEAEKARKDLTVVAKELSEDGK 164 (277)
Q Consensus 113 ~kmq~~s~ea----Y~vys~ka~~vL~etse~L----~iqa~ka~~~L~~~ake~~e~gk 164 (277)
.-|.+.+.|. +.--|+|+...+++-.+.+ ..++++||.++-.+++++.++|+
T Consensus 47 ~ALkga~~e~~~~il~nms~r~a~~l~~e~~~~g~v~~~di~~Aq~~iv~~~r~l~~~G~ 106 (110)
T PF01706_consen 47 LALKGASEELREKILSNMSKRAAEMLREEMEALGPVRLSDIEEAQREIVEIVRRLEEEGE 106 (110)
T ss_dssp HHHCTS-HHHHHHHHTTS-HHHHHHHHHHHHHH-S--HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHccCCHHHHHHHHHHcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCcC
Confidence 3344444443 3445788888888877775 56889999999999999999996
No 86
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=38.42 E-value=4.3e+02 Score=27.44 Aligned_cols=34 Identities=18% Similarity=0.061 Sum_probs=16.8
Q ss_pred HHHhhcCCCCcccccccccccceechhhHHHHHHh
Q 023802 179 EIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLG 213 (277)
Q Consensus 179 ~i~et~~~~~e~~~~~s~mHDFclgipYg~LVa~G 213 (277)
.|++....|. .|.+..+..-.-+|+.-|+++++|
T Consensus 414 ~vi~~A~~P~-~P~~P~~~~~l~~~~~~gl~lg~~ 447 (754)
T TIGR01005 414 RVASPASVPS-EPYFPKKGPIVGLAAVLGLLLGAI 447 (754)
T ss_pred EEeccCcCCC-CCCCCchHHHHHHHHHHHHHHHHH
Confidence 4667666654 455454444444444444444333
No 87
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=38.09 E-value=1.9e+02 Score=25.79 Aligned_cols=74 Identities=12% Similarity=0.011 Sum_probs=37.9
Q ss_pred cccceechhhHHHHHHhhHHHHHhc-CCh-----------------hHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHH
Q 023802 197 LRDFYLGIPYGLLLTLGGFISFMVT-GSI-----------------PAIRFGVILGGTLLALSIASLRSHKKGKTSPVAL 258 (277)
Q Consensus 197 mHDFclgipYg~LVa~GGiiGY~ka-GSi-----------------~SL~aGl~fG~lLl~aGygSLk~~k~gk~s~l~L 258 (277)
+-|+ +|-.|..=.+.||+.+|++. .+. +++...+..-++++..--.++...+...|.|-++
T Consensus 15 i~dd-~G~af~~G~vgG~~~~~~~G~rnsp~g~rl~g~l~~~~~rap~~g~~FAv~G~~ys~~ec~~~~~R~K~D~~Nsi 93 (164)
T PTZ00236 15 IIED-MGGAFSMGCIGGFIWHFLKGMRNSPKGERFSGGFYLLRKRAPILGGNFAIWGGLFSTFDCTLQYLRGKEDHWNAI 93 (164)
T ss_pred HHHh-ccHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 4444 45677777778888888764 111 2222222222222222235556666556667666
Q ss_pred HHHHHHHHHHHHH
Q 023802 259 KGQAGQRVVYFTI 271 (277)
Q Consensus 259 ~~SavLAavm~~R 271 (277)
+.-++-.+++..|
T Consensus 94 ~AG~~TGa~l~~r 106 (164)
T PTZ00236 94 ASGFFTGGVLAIR 106 (164)
T ss_pred HHHHHHHHHHHHh
Confidence 6555555555443
No 88
>TIGR01558 sm_term_P27 phage terminase, small subunit, putative, P27 family. Members tend to be adjacent to the phage terminase large subunit gene.
Probab=37.80 E-value=2.1e+02 Score=22.91 Aligned_cols=17 Identities=24% Similarity=0.657 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHHHHHH
Q 023802 94 AKESEEAWKQTLAAFRE 110 (277)
Q Consensus 94 ~ees~E~Wkq~L~~fke 110 (277)
++.++..|+.+...+++
T Consensus 7 ~~~ak~~w~ri~~~L~~ 23 (116)
T TIGR01558 7 GKEGKDEWKRVAPELKG 23 (116)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 35799999999999885
No 89
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=37.51 E-value=2.3e+02 Score=26.06 Aligned_cols=63 Identities=22% Similarity=0.372 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Q 023802 98 EEAWKQTLAAFREQAIKMQ-SVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSE 161 (277)
Q Consensus 98 ~E~Wkq~L~~fkeqa~kmq-~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e 161 (277)
-|+||..|+.|++|-..|. .+-.|-=-||.-- -+-=|+-.|||+-.-+.-|.+|.++-..+++
T Consensus 107 lq~mr~~ln~FR~qm~dlE~~l~~QQalvy~hM-SeeER~EaeQLQsLR~avRqElqELE~QL~D 170 (179)
T PF14723_consen 107 LQQMRRSLNSFREQMMDLELHLMRQQALVYRHM-SEEEREEAEQLQSLRSAVRQELQELEFQLED 170 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999876542 2222222233211 1112344566666666666666666655555
No 90
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=37.44 E-value=2.6e+02 Score=23.86 Aligned_cols=69 Identities=19% Similarity=0.158 Sum_probs=37.4
Q ss_pred cChhhHHHHHHHHHHHHHHHHHHhhhhhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 023802 92 ASAKESEEAWKQTLAAFREQAIKMQSVSQ--------EAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELS 160 (277)
Q Consensus 92 ~~~ees~E~Wkq~L~~fkeqa~kmq~~s~--------eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~ 160 (277)
.+.++..+.-++-|..-+.+|..+-.-.+ ++-+.--+.|..++.++.+++..+.++|..+|..-+..++
T Consensus 66 ~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e~~~a~~~l~~~i~~lA 142 (175)
T PRK14472 66 DEAEAILRKNRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQEKRRALDVLRNEVADLA 142 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555666666666555543322 2333333445556666777777777777766654444433
No 91
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.42 E-value=1.5e+02 Score=31.93 Aligned_cols=106 Identities=21% Similarity=0.303 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcCchhhH
Q 023802 100 AWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEVKE 179 (277)
Q Consensus 100 ~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaensp~vK~ 179 (277)
-|+-...+|++.+ |+|++|.- ++.--++|...+...++++..+..|+++ .|-+. .---|.|||
T Consensus 429 le~~~v~~~~~~V--------Qe~~~Y~g-----~ekk~n~LE~e~kn~~~ev~kls~ei~~--ie~~l--~~~~~~vke 491 (758)
T COG4694 429 LEKFLVNEFKSDV--------QEYNKYCG-----LEKKINNLEKEIKNNQEEVKKLSNEIKE--IEKFL--VSIKPIVKE 491 (758)
T ss_pred HHHHHHHHHHHHH--------HHHHHHHH-----HHHHHhHHHHHHHhhHHHHHHHHHHHHH--HHHHH--hhchhhHHH
Confidence 3666666777654 57888842 1124677777777888888888888887 44322 333468999
Q ss_pred HHhhcCCCCcccccccccccceech-----hhHHHHHHhhHHHHHhc-CChhHHHH
Q 023802 180 IVETFTLPTEDVKEFSTLRDFYLGI-----PYGLLLTLGGFISFMVT-GSIPAIRF 229 (277)
Q Consensus 180 i~et~~~~~e~~~~~s~mHDFclgi-----pYg~LVa~GGiiGY~ka-GSi~SL~a 229 (277)
|-.|+..- -..-.||+.+ .|+..==.|-..|=..+ |....+++
T Consensus 492 ~nq~l~~g-------~gra~~~L~~~~kek~y~i~r~~g~~~gn~LSEGekt~iaf 540 (758)
T COG4694 492 INQTLLKG-------YGRANFSLACTEKEKFYRIQREDGQLVGNTLSEGEKTFIAF 540 (758)
T ss_pred HHHHHHhh-------cchheeeeeeccchhhheeecccCccccccccccchhHHHH
Confidence 98774321 1222345443 34444444555555333 66665544
No 92
>PF01226 Form_Nir_trans: Formate/nitrite transporter; InterPro: IPR000292 Proteins in this entry belong to the Formate-Nitrite Transporter (FNT) family (TC 2.A.44). The prokaryotic proteins of the FNT family probably function in the transport of the structurally related compounds, formate and nitrite. The homologous yeast protein may function as a short chain aliphatic carboxylate H+ symporter, transporting formate, acetate and propionate, and functioning primarily as an acetate uptake permease.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3Q7K_H 3KLY_E 3KLZ_A 3TDX_C 3TE2_B 3TDS_B 3TDR_E 3TDO_C 3TE1_B 3TDP_C ....
Probab=37.41 E-value=18 Score=33.19 Aligned_cols=65 Identities=22% Similarity=0.334 Sum_probs=45.6
Q ss_pred HHHhhcCCCCcccccccccccceechhhHHHHHHhhHHHHHhcCC-------hhHHHHHHHHHHHHHHHHHH
Q 023802 179 EIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGS-------IPAIRFGVILGGTLLALSIA 243 (277)
Q Consensus 179 ~i~et~~~~~e~~~~~s~mHDFclgipYg~LVa~GGiiGY~kaGS-------i~SL~aGl~fG~lLl~aGyg 243 (277)
|++|.....+++-.+...+.-|+.++-=|.++++|+++.....+. ...+++|++|+..|+..-++
T Consensus 3 e~~~~~~~~g~~k~~~~~~~~~~~~~lAG~~ig~g~~~~~~v~~~~~~~~~g~~~l~~g~~F~~Gl~lIv~~ 74 (250)
T PF01226_consen 3 EIVEAIVEAGEKKANRPPSKLFLRGILAGAFIGFGALLSLVVAAGFGAENPGLAKLVGGLVFPIGLVLIVFL 74 (250)
T ss_dssp HCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHHHHh
Confidence 444443333333444556667889999999999999988887755 57788888888877766554
No 93
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=37.24 E-value=30 Score=36.10 Aligned_cols=61 Identities=33% Similarity=0.494 Sum_probs=0.0
Q ss_pred hhhHHHhhcCCCCc---cc-ccccccccceec-----hhhHHHHHHhhHHHHHhc-----------------------CC
Q 023802 176 EVKEIVETFTLPTE---DV-KEFSTLRDFYLG-----IPYGLLLTLGGFISFMVT-----------------------GS 223 (277)
Q Consensus 176 ~vK~i~et~~~~~e---~~-~~~s~mHDFclg-----ipYg~LVa~GGiiGY~ka-----------------------GS 223 (277)
+...||++.+-|.= || --.+...=|.+| ++||++++++|++.+.+. -+
T Consensus 345 pFe~iv~~Yg~P~Y~EiDPt~~~ai~fp~fFG~MfGD~GyGlll~l~~l~l~~~~~~~~~~~~e~~~~~~~~~~il~~~g 424 (759)
T PF01496_consen 345 PFEMIVDMYGLPKYREIDPTPFMAITFPFFFGMMFGDAGYGLLLLLFGLLLIKKFKKLKKMKNEIFNMLFKLRYILLLMG 424 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcCCCCCCccccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHH
Confidence 44456666655421 12 233455666666 478999999888765432 24
Q ss_pred hhHHHHHHHHHHH
Q 023802 224 IPAIRFGVILGGT 236 (277)
Q Consensus 224 i~SL~aGl~fG~l 236 (277)
+.|+++|+++|..
T Consensus 425 i~si~~G~iyg~~ 437 (759)
T PF01496_consen 425 ISSIIFGFIYGSF 437 (759)
T ss_dssp -------------
T ss_pred HHHHHHHHHHhhH
Confidence 5777888888877
No 94
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=36.93 E-value=62 Score=24.88 Aligned_cols=45 Identities=22% Similarity=0.382 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023802 95 KESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQL 141 (277)
Q Consensus 95 ees~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L 141 (277)
+|+.|.|-+ +.|++...++..++.+-++...++-..|..+....+
T Consensus 4 ~e~~e~yg~--~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~~ 48 (118)
T PF07739_consen 4 EEARERYGD--EAYAESEERLASLSKEEWQELQKEWDELFAELAALM 48 (118)
T ss_dssp -HHHHH-------------------------TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHCh--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888888 888888888888888888888877666665544333
No 95
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=36.85 E-value=1.5e+02 Score=25.81 Aligned_cols=56 Identities=21% Similarity=0.340 Sum_probs=35.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhhHH
Q 023802 93 SAKESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRA-----------TAILKETAEQLKIEAEKARKDL 152 (277)
Q Consensus 93 ~~ees~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka-----------~~vL~etse~L~iqa~ka~~~L 152 (277)
+.+...|+|++.++..+.+ -.++++-+++-.+=. ...+.-+-|+|+.|.++|+++-
T Consensus 82 ~g~s~~eaw~~~~~~~~~~----~~L~~~d~eiL~~lg~~LG~~D~e~Q~k~i~L~~e~L~~~~~~a~~~~ 148 (171)
T PRK08307 82 EGETAYEAWEKALEENWKN----TALKKEDIEILLQFGKTLGQSDREGQQKHIRLALEHLEREEEEAEEEQ 148 (171)
T ss_pred CCCCHHHHHHHHHHHhhhc----cCCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477999999999887633 345555555433211 1345667777777777777543
No 96
>PRK03557 zinc transporter ZitB; Provisional
Probab=36.37 E-value=2.4e+02 Score=26.36 Aligned_cols=55 Identities=11% Similarity=0.090 Sum_probs=37.1
Q ss_pred ceechhhHHHHHHhhHHHHHhcCChhHHHHHHH--HHHHHHHHHHHHHHHhhCCCCc
Q 023802 200 FYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVI--LGGTLLALSIASLRSHKKGKTS 254 (277)
Q Consensus 200 FclgipYg~LVa~GGiiGY~kaGSi~SL~aGl~--fG~lLl~aGygSLk~~k~gk~s 254 (277)
.++.+...+++++..+++.+.+||.+=|.=|+= .-.+..++++.+++..++|.+.
T Consensus 21 ~~~~~~~n~~l~i~k~~~g~~tgS~AllaDa~hsl~D~~~~~~~l~a~~~s~kp~d~ 77 (312)
T PRK03557 21 LLYAFGVTAGFMLVEVIGGFLSGSLALLADAGHMLTDAAALLFALLAVQFSRRPPTI 77 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 566777777888888888888999875554442 2333444566777787776543
No 97
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.33 E-value=1.1e+02 Score=28.83 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCC
Q 023802 228 RFGVILGGTLLALSIASLRSHKKGK 252 (277)
Q Consensus 228 ~aGl~fG~lLl~aGygSLk~~k~gk 252 (277)
+.|+..++. ++|-+||.|++++
T Consensus 63 ~GglAAlG~---laY~aY~N~q~~q 84 (225)
T COG2979 63 LGGLAALGA---LAYKAYQNYQKGQ 84 (225)
T ss_pred hhhHHHHHH---HHHHHHHHHhccC
Confidence 444444444 8899999999887
No 98
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=36.32 E-value=73 Score=26.05 Aligned_cols=47 Identities=23% Similarity=0.273 Sum_probs=25.9
Q ss_pred eechhhHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 023802 201 YLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKG 251 (277)
Q Consensus 201 clgipYg~LVa~GGiiGY~kaGSi~SL~aGl~fG~lLl~aGygSLk~~k~g 251 (277)
..++|-.++++ |-++|+....+ -...+++|.+.++++|.-+|.+.+.
T Consensus 74 ~Y~lPll~li~-g~~l~~~~~~~---e~~~~l~~l~~l~~~~~~~~~~~~~ 120 (135)
T PF04246_consen 74 VYLLPLLALIA-GAVLGSYLGGS---ELWAILGGLLGLALGFLILRLFDRR 120 (135)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555544 44444444443 3444555555566788777777664
No 99
>TIGR00220 mscL large conductance mechanosensitive channel protein. Protein encodes a channel which opens in response to a membrane stretch force. Probably serves as an osmotic gauge. Carboxy terminus tends to be more divergent across species with a high degree of sequence conservation found at the N-terminus.
Probab=36.21 E-value=40 Score=28.89 Aligned_cols=25 Identities=28% Similarity=0.712 Sum_probs=22.0
Q ss_pred hhHHHHHhcCChhHHHHHHHHHHHH
Q 023802 213 GGFISFMVTGSIPAIRFGVILGGTL 237 (277)
Q Consensus 213 GGiiGY~kaGSi~SL~aGl~fG~lL 237 (277)
-|+-.|+.+|++.-|+.|++.|++.
T Consensus 3 ~~Fk~Fi~rGNVidLAVgVIIGaAF 27 (127)
T TIGR00220 3 KEFKEFAMRGNVVDLAVGVVIGGAF 27 (127)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4677899999999999999999983
No 100
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=36.16 E-value=1.4e+02 Score=27.45 Aligned_cols=51 Identities=18% Similarity=0.100 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023802 96 ESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAE 146 (277)
Q Consensus 96 es~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ 146 (277)
-+=..|+++.+..++.-+++.--.++.|+...++-..-|++.-++++.+..
T Consensus 125 ldp~n~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~~~ 175 (286)
T cd01019 125 LSPENAAEVAQAVAEKLSALDPDNAATYAANLEAFNARLAELDATIKERLA 175 (286)
T ss_pred CCHHHHHHHHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345678999999999999999999999988888877777776666665543
No 101
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=35.87 E-value=3e+02 Score=25.59 Aligned_cols=73 Identities=15% Similarity=0.223 Sum_probs=40.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhh
Q 023802 93 SAKESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKY 166 (277)
Q Consensus 93 ~~ees~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkey 166 (277)
.-+++||..+-+|++|+.=..-=.+-=+..|+-+... -+--++.++.++...++.+..=..+=.|-.+|=.+|
T Consensus 36 sq~eaqeQF~sALe~f~sl~~~~ggdLe~~Y~~ln~~-ye~s~~~A~~V~~RI~~vE~Va~ALF~EWe~EL~~Y 108 (201)
T PF11172_consen 36 SQQEAQEQFKSALEQFKSLVNFDGGDLEDKYNALNDE-YESSEDAAEEVSDRIDAVEDVADALFDEWEQELDQY 108 (201)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888888888888854332223334566665432 333444566666666666654444444444443344
No 102
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=35.47 E-value=4.8e+02 Score=26.30 Aligned_cols=50 Identities=18% Similarity=0.313 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcCchhhHHHhhcC
Q 023802 129 RATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEVKEIVETFT 185 (277)
Q Consensus 129 ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaensp~vK~i~et~~ 185 (277)
|-.+.|-|.+|--+-.....|.+|..+..-+ +|. .-|-.-+|-|++|++-
T Consensus 262 rLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~-----~Yq--s~eRaRdi~E~~Es~q 311 (395)
T PF10267_consen 262 RLEEQLNDLTELHQNEIYNLKQELASMEEKM-----AYQ--SYERARDIWEVMESCQ 311 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-----HHH--HHHHHhHHHHHHHHHH
Confidence 3445556666666666666666766654433 342 2333335556666553
No 103
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=35.26 E-value=2.9e+02 Score=23.76 Aligned_cols=15 Identities=13% Similarity=0.262 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHh
Q 023802 101 WKQTLAAFREQAIKM 115 (277)
Q Consensus 101 Wkq~L~~fkeqa~km 115 (277)
=.+.++..+++-.+.
T Consensus 77 A~~~l~e~e~~L~~A 91 (184)
T PRK13455 77 AQTLLASYERKQREV 91 (184)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444433333
No 104
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=35.20 E-value=3.4e+02 Score=24.47 Aligned_cols=75 Identities=24% Similarity=0.367 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHH------HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHhhh---------
Q 023802 99 EAWKQTLAAFRE------QAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKAR--KDLTVVAKELSE--------- 161 (277)
Q Consensus 99 E~Wkq~L~~fke------qa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~--~~L~~~ake~~e--------- 161 (277)
+...+.|+.+++ +-..-|+|+.|-+|+=++- ..|+..-++|+...+||+ +|+-.+-.++.+
T Consensus 105 ~~~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D~~arl--~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~ 182 (262)
T PF14257_consen 105 DKFDSFLDELSELGKVTSRNISSEDVTEQYVDLEARL--KNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLE 182 (262)
T ss_pred HHHHHHHHHHhccCceeeeeccccchHHHHHHHHHHH--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555553 3345688999988876643 456666666777666664 344445455432
Q ss_pred hhhhhHhHHhhcCc
Q 023802 162 DGKKYLTEATENNP 175 (277)
Q Consensus 162 ~gkeyl~~aaensp 175 (277)
.-+.||...++-|.
T Consensus 183 ~~~~~l~~~v~~st 196 (262)
T PF14257_consen 183 GQLKYLDDRVDYST 196 (262)
T ss_pred HHHHHHHHhhceEE
Confidence 11345555555555
No 105
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=34.82 E-value=97 Score=32.97 Aligned_cols=24 Identities=13% Similarity=-0.046 Sum_probs=10.6
Q ss_pred HHhhCCCCchhHHHHHHHHHHHHH
Q 023802 246 RSHKKGKTSPVALKGQAGQRVVYF 269 (277)
Q Consensus 246 k~~k~gk~s~l~L~~SavLAavm~ 269 (277)
..|-++.......+....+|.++|
T Consensus 253 ~~y~~~~~~~~~~~~e~~ia~~lF 276 (764)
T TIGR02865 253 AFYTQGSVAFSLALYEALIATLLF 276 (764)
T ss_pred HHHhccchhHHHHHHHHHHHHHHH
Confidence 334444333333344555555554
No 106
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=34.31 E-value=52 Score=26.66 Aligned_cols=26 Identities=19% Similarity=0.070 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCC
Q 023802 228 RFGVILGGTLLALSIASLRSHKKGKT 253 (277)
Q Consensus 228 ~aGl~fG~lLl~aGygSLk~~k~gk~ 253 (277)
+.|++.|.+++++||..+|+++..+-
T Consensus 6 iv~~~~~v~~~i~~y~~~k~~ka~~~ 31 (87)
T PF10883_consen 6 IVGGVGAVVALILAYLWWKVKKAKKQ 31 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777899999999887543
No 107
>PRK06743 flagellar motor protein MotP; Reviewed
Probab=34.09 E-value=1.4e+02 Score=27.99 Aligned_cols=106 Identities=13% Similarity=0.112 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHH--hhhhhhhhHhH----Hhhc-Cc-hhhHHHhhcCCC-Ccccccccccccceec--h
Q 023802 136 ETAEQLKIEAEKARKDLTVVAKE--LSEDGKKYLTE----ATEN-NP-EVKEIVETFTLP-TEDVKEFSTLRDFYLG--I 204 (277)
Q Consensus 136 etse~L~iqa~ka~~~L~~~ake--~~e~gkeyl~~----aaen-sp-~vK~i~et~~~~-~e~~~~~s~mHDFclg--i 204 (277)
|+-+++-.-++|||++ +-+|=| +-+--.+++.. ..+. +| .++++.|+-... .+...+...+-+-.-+ .
T Consensus 73 ~~i~~l~~la~~aRr~-GlLaLE~~~~~~~d~fl~~gl~l~vdg~~~e~i~~~le~~~~~~~~~~~~~~~~l~~~a~~AP 151 (254)
T PRK06743 73 QLTDLFVDFSKKSKKH-GLLSLEVDGEQVDNPFIQKGIRLMLSGYDEDELKEVLMKDVETEVYELRKGAALLDKIGDFAP 151 (254)
T ss_pred HHHHHHHHHHHHHHhc-CHHHHHhhccCCccHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4555566667777754 333333 22222233333 3223 44 888888874432 2222222222222222 2
Q ss_pred hhHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Q 023802 205 PYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIA 243 (277)
Q Consensus 205 pYg~LVa~GGiiGY~kaGSi~SL~aGl~fG~lLl~aGyg 243 (277)
.+|.+=++-|++.-+..=+-++.+++. .+.+|+.-.||
T Consensus 152 ~lGllGTVlGLI~~~~~l~~p~~lg~g-Ia~ALvtT~yG 189 (254)
T PRK06743 152 AWGMIGTLIGLIIMLQNLQDTSQIGTG-MAVAMLTTLYG 189 (254)
T ss_pred HHHHHHHHHHHHHHhHccCCHHHHHHH-HHHHHHHHHHH
Confidence 356666666777766554345444333 33333444443
No 108
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=33.68 E-value=2.8e+02 Score=23.15 Aligned_cols=73 Identities=19% Similarity=0.163 Sum_probs=42.4
Q ss_pred hhhcChhhHHHHHHHHHHHHHHHHHHhhhhhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 023802 89 EIKASAKESEEAWKQTLAAFREQAIKMQSVSQEAY--------EIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELS 160 (277)
Q Consensus 89 ~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s~eaY--------~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~ 160 (277)
+...+.++..+.+++-|..-+.+|..+-.-..+.- +.--+.|..++.++.+++..+.++|..+|..-+..+.
T Consensus 50 ~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a~~~i~~e~~~a~~~l~~ei~~lA 129 (159)
T PRK13461 50 EDQKKARELKLKNERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEAQREKEKAEYEIKNQAVDLA 129 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556667777777777777766544333222 2223445556666666666666777766655554444
Q ss_pred h
Q 023802 161 E 161 (277)
Q Consensus 161 e 161 (277)
.
T Consensus 130 ~ 130 (159)
T PRK13461 130 V 130 (159)
T ss_pred H
Confidence 4
No 109
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=33.59 E-value=3.2e+02 Score=23.97 Aligned_cols=39 Identities=21% Similarity=0.349 Sum_probs=24.4
Q ss_pred hhHHHH-HHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Q 023802 205 PYGLLL-TLGGFISFMVTGSIPAIRFGVILGGTLLALSIA 243 (277)
Q Consensus 205 pYg~LV-a~GGiiGY~kaGSi~SL~aGl~fG~lLl~aGyg 243 (277)
.++... ++++++.++..|....+...+.+|..-+.+|++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~lg~~ 77 (290)
T PF09991_consen 38 KYGLIALLAAAVLLALFGGPVSALFYLLFFGLPGLVLGYL 77 (290)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344433 333355566666677777777777777777776
No 110
>PRK07194 fliG flagellar motor switch protein G; Reviewed
Probab=33.21 E-value=69 Score=30.57 Aligned_cols=55 Identities=29% Similarity=0.401 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhc
Q 023802 119 SQEAYEIYSKRATAILKETAEQL----KIEAEKARKDLTVVAKELSEDGKKYLTEATEN 173 (277)
Q Consensus 119 s~eaY~vys~ka~~vL~etse~L----~iqa~ka~~~L~~~ake~~e~gkeyl~~aaen 173 (277)
-.+-+.--|+||.+.|+|=-|.+ ..+.|+||+..-.+++.+.++|+=-|...+|.
T Consensus 273 r~~il~nmS~Raa~~l~eele~~gpV~~sdvE~Aq~~Iv~~~r~L~~~G~I~l~~~~~~ 331 (334)
T PRK07194 273 RQAILRVMPKRQAQALEAQIERLGPVPLSRVEQARKEIMALVRELAEAGEIELQLFEEQ 331 (334)
T ss_pred HHHHHHHccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCEEEeecccc
Confidence 34557778999999999987765 56899999999999999999998777666653
No 111
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=32.96 E-value=2.6e+02 Score=22.57 Aligned_cols=72 Identities=18% Similarity=0.206 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhh
Q 023802 98 EEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATE 172 (277)
Q Consensus 98 ~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aae 172 (277)
+..=+++++.-+++|.++.. ++=+-=...|..+|.++-++...+.++|..++..-...+...+++.+..|.+
T Consensus 23 ~~Ea~~Ii~~Ak~~A~k~~~---eii~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~eia~L~~~a~~k~~~av~ 94 (103)
T PRK08404 23 KEEAKKIIRKAKEEAKKIEE---EIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEELKVKAEENFETAVS 94 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555544444321 2222224567778999999999999999999999888888888888877765
No 112
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=32.96 E-value=3.1e+02 Score=23.36 Aligned_cols=39 Identities=13% Similarity=0.222 Sum_probs=17.9
Q ss_pred hhhcChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 023802 89 EIKASAKESEEAWKQTLAAFREQAIKMQSVSQEAYEIYS 127 (277)
Q Consensus 89 ~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys 127 (277)
.+..+=+++++.=++.-+...+--.+++....||-++-.
T Consensus 45 ~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~ 83 (167)
T PRK14475 45 KIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLA 83 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334445444444333333333555555555555443
No 113
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=32.68 E-value=3.6e+02 Score=24.09 Aligned_cols=65 Identities=18% Similarity=0.192 Sum_probs=36.0
Q ss_pred hhhcChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHH-H-------HHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 023802 89 EIKASAKESEEAWKQTLAAFREQAIKMQSVSQEAYE-I-------YSKRATAILKETAEQLKIEAEKARKDLT 153 (277)
Q Consensus 89 ~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s~eaY~-v-------ys~ka~~vL~etse~L~iqa~ka~~~L~ 153 (277)
+...+.++.++..++-|..-+++|..+..-.++.-+ . =-+.|..++.++-.++..+.++|..+|.
T Consensus 93 ~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~~~Lk 165 (205)
T PRK06231 93 ELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRELKEQLQ 165 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666667777777666665544333222 1 1234555666666677777777744443
No 114
>PF07051 OCIA: Ovarian carcinoma immunoreactive antigen (OCIA); InterPro: IPR009764 This family consists of several ovarian carcinoma immunoreactive antigen (OCIA) and related eukaryotic sequences. The function of this family is unknown [,].
Probab=32.67 E-value=63 Score=27.38 Aligned_cols=42 Identities=24% Similarity=0.438 Sum_probs=28.3
Q ss_pred echhhHHHHH--HhhHH--HHHhc----CChhHHHHHHHHHHHHHHHHHHHHH
Q 023802 202 LGIPYGLLLT--LGGFI--SFMVT----GSIPAIRFGVILGGTLLALSIASLR 246 (277)
Q Consensus 202 lgipYg~LVa--~GGii--GY~ka----GSi~SL~aGl~fG~lLl~aGygSLk 246 (277)
-++|++++.. ..+++ ||+++ |+.+-+++++++|-+ +|-.||.
T Consensus 45 RslPls~~s~~~t~~lv~~G~l~~~~rfG~~PKv~~ag~~Gy~---~GK~SY~ 94 (111)
T PF07051_consen 45 RSLPLSAGSMLVTQGLVKKGYLKSSPRFGSLPKVAFAGILGYF---VGKISYQ 94 (111)
T ss_pred ccCcHHHHHHHHHHHHHHcCcccCCCccccccHHHHHHHHHHh---hhHHHHH
Confidence 4678876532 23322 55544 789999999999998 6666663
No 115
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=32.44 E-value=2e+02 Score=22.89 Aligned_cols=83 Identities=22% Similarity=0.263 Sum_probs=58.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhh------hhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhh
Q 023802 94 AKESEEAWKQTLAAFREQAIKMQ------SVSQEA---YEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGK 164 (277)
Q Consensus 94 ~ees~E~Wkq~L~~fkeqa~kmq------~~s~ea---Y~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gk 164 (277)
.|.|++.=++.+...+-|..|.+ .++.+. |-..++.+..+|..+.+++..-.--.. -+--+|.-|.+
T Consensus 2 ~esS~~ir~rV~~Ar~~Q~~R~~~~~~Na~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~R~~~-rilrvARTIAD--- 77 (96)
T PF13335_consen 2 GESSAEIRERVEAARERQRERYGGIKCNAQLPGEELRKYCPLSSEAKKLLEQAAEKLNLSARGYH-RILRVARTIAD--- 77 (96)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCCccccCCHHHHHhHcCCCHHHHHHHHHHHHHcCcCHHHHH-HHHHHHHHHHh---
Confidence 45677777788888888888877 556655 555678999999999888877665555 44456666666
Q ss_pred hhHhHHhhcCchhhHHHhhc
Q 023802 165 KYLTEATENNPEVKEIVETF 184 (277)
Q Consensus 165 eyl~~aaensp~vK~i~et~ 184 (277)
+.-...+...+|.|++
T Consensus 78 ----L~~~~~I~~~hi~EAl 93 (96)
T PF13335_consen 78 ----LEGSERITREHIAEAL 93 (96)
T ss_pred ----HcCCCCCCHHHHHHHH
Confidence 4444555777887775
No 116
>KOG4119 consensus G protein gamma subunit [Signal transduction mechanisms]
Probab=32.26 E-value=89 Score=24.64 Aligned_cols=43 Identities=30% Similarity=0.472 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcCchhhHH
Q 023802 134 LKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEVKEI 180 (277)
Q Consensus 134 L~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaensp~vK~i 180 (277)
++-+.||||.++.--|.+.+..|+|+ .+|+..-+.+-|-++-|
T Consensus 12 ~k~~VeqLk~e~~~~R~~vS~a~~el----~~y~E~~~~~DpLl~gv 54 (71)
T KOG4119|consen 12 MKKEVEQLKLEANIERIKVSKAAAEL----LEYCETHATEDPLLEGV 54 (71)
T ss_pred HHHHHHHHHHHHHhhHhhHHHHHHHH----HHHHHhcCccCccccCC
Confidence 45588999999998899999999998 45887777777744333
No 117
>PF03779 SPW: SPW repeat; InterPro: IPR005530 A short repeat found in a small family of membrane-bound proteins. This repeat contains a conserved SPW motif in the first of two transmembrane helices [].
Probab=31.56 E-value=66 Score=23.35 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=21.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 023802 215 FISFMVTGSIPAIRFGVILGGTLLALSIASLRS 247 (277)
Q Consensus 215 iiGY~kaGSi~SL~aGl~fG~lLl~aGygSLk~ 247 (277)
++|| +++.......++.|.+..++++.....
T Consensus 18 vlgf--~~~~~~~~~~vi~G~~v~~la~~~~~~ 48 (51)
T PF03779_consen 18 VLGF--SATAAAAWNNVIVGILVALLALWFLAA 48 (51)
T ss_pred Hccc--CCchhHHHHHHHHHHHHHHHHHHHhcc
Confidence 4567 555566677889999888888765543
No 118
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=31.54 E-value=3e+02 Score=22.78 Aligned_cols=25 Identities=8% Similarity=-0.231 Sum_probs=16.7
Q ss_pred HHhhCCCCchhHHHHHHHHHHHHHH
Q 023802 246 RSHKKGKTSPVALKGQAGQRVVYFT 270 (277)
Q Consensus 246 k~~k~gk~s~l~L~~SavLAavm~~ 270 (277)
|+|+-|.+.+..+.+=++++..+.+
T Consensus 111 Q~y~~~~~~~~~~~~W~~~~l~~~~ 135 (145)
T PF09925_consen 111 QIYQTGADPWQLFLLWALLALPLAY 135 (145)
T ss_pred hHhcCCCchHHHHHHHHHHHHHHHH
Confidence 7788888887666655555555443
No 119
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=31.52 E-value=1.2e+02 Score=29.11 Aligned_cols=56 Identities=14% Similarity=0.091 Sum_probs=33.2
Q ss_pred HHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHh
Q 023802 218 FMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEI 273 (277)
Q Consensus 218 Y~kaGSi~SL~aGl~fG~lLl~aGygSLk~~k~gk~s~l~L~~SavLAavm~~R~~ 273 (277)
|.+++.+.-++.|++|=.+-+.+.+|-+..-++-+..+..-++-.++|.+++.|-+
T Consensus 193 faRkR~i~f~llgllfliiaigltvGT~~~A~~~~giY~~wv~~~l~a~~~~~rs~ 248 (256)
T PF09788_consen 193 FARKRAIIFFLLGLLFLIIAIGLTVGTWTYAKTYGGIYVSWVGLFLIALICLIRSI 248 (256)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCcEeHHHHHHHHHHHHHHHHhh
Confidence 66666666667777766665555566554444433344444444667777777643
No 120
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=31.31 E-value=2.2e+02 Score=26.59 Aligned_cols=88 Identities=16% Similarity=0.185 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHH-----
Q 023802 96 ESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEA----- 170 (277)
Q Consensus 96 es~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~a----- 170 (277)
-+=+-|+++.+.++++-.++--=-++-|+-+.++...=|++..+..+...++... ... =-+..+.=.||...
T Consensus 137 ldp~na~~~v~~I~~~L~~~dP~~~~~y~~N~~~y~~kL~~l~~~~~~~~~~~~~-~r~--~vt~h~af~Y~~~~~g~~~ 213 (303)
T COG0803 137 LDPKNAKIYAENIADALVELDPENKETYEKNAEAYLKKLNKLDEEAKAKLSKIPA-QRD--VVTSHGAFGYLARDYGLKQ 213 (303)
T ss_pred cCHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-CcE--EEeecchHHHHHhccCCcc
Confidence 4667899999999998888877777778777666444444444444444444331 000 01223333444442
Q ss_pred ---------hhcCc-hhhHHHhhcCC
Q 023802 171 ---------TENNP-EVKEIVETFTL 186 (277)
Q Consensus 171 ---------aensp-~vK~i~et~~~ 186 (277)
.|=|| ++++|++.+..
T Consensus 214 ~~i~~~~~~~e~s~~~l~~l~~~ik~ 239 (303)
T COG0803 214 VAIAGISPEAEPSPKDLAKLVDLIKK 239 (303)
T ss_pred ccccCcCcccCCCHHHHHHHHHHHHH
Confidence 44455 88888888765
No 121
>PRK08990 flagellar motor protein PomA; Reviewed
Probab=31.26 E-value=2.2e+02 Score=26.55 Aligned_cols=106 Identities=17% Similarity=0.170 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhh-----cCc-hhhHHHhhcCC-CCcccccccccccceechh--h
Q 023802 136 ETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATE-----NNP-EVKEIVETFTL-PTEDVKEFSTLRDFYLGIP--Y 206 (277)
Q Consensus 136 etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aae-----nsp-~vK~i~et~~~-~~e~~~~~s~mHDFclgip--Y 206 (277)
|.-+++-..++|+|++ +-+|=|.-+--..++..+.+ ++| .++|+.|.-.. ..+...+...+-+-+-++. +
T Consensus 75 ~~i~~l~~la~~aR~~-GllaLE~~~i~d~f~~~~l~l~vdg~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~a~~aP~l 153 (254)
T PRK08990 75 DLIEQIVEMADAARKG-GFLALEEAEISNSFMQKGVDLLVDGHDGDVVRAALEKDIALTEERHETGIGIFRAFGDVAPAM 153 (254)
T ss_pred HHHHHHHHHHHHHhhc-cHhhhhccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHhHHH
Confidence 4555566666666654 22332321111244443332 355 89999887433 2333444444444443332 6
Q ss_pred HHHHHHhhHHHHHhc-CChhHHHHHHHHHHHHHHHHHHH
Q 023802 207 GLLLTLGGFISFMVT-GSIPAIRFGVILGGTLLALSIAS 244 (277)
Q Consensus 207 g~LVa~GGiiGY~ka-GSi~SL~aGl~fG~lLl~aGygS 244 (277)
|.+=++-|++.-+.. ++. +.+++ ..+.+|+.-.||.
T Consensus 154 GllGTVlGlI~~~~~l~~p-~~lg~-gIa~ALitT~yGl 190 (254)
T PRK08990 154 GMIGTLIGLVAMLSNMDDP-KSIGP-AMAVALLTTLYGA 190 (254)
T ss_pred HHHHHHHHHHHHHHhccCH-HHHHH-HHHHHHHHHHHHH
Confidence 666666666664444 554 44333 4444555555543
No 122
>PRK08383 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=31.08 E-value=3.2e+02 Score=24.13 Aligned_cols=40 Identities=10% Similarity=0.105 Sum_probs=27.8
Q ss_pred HHHHHhhHHHHHhcCC-------hhHHHHHHHHHHHHHHHHHHHHHHhhC
Q 023802 208 LLLTLGGFISFMVTGS-------IPAIRFGVILGGTLLALSIASLRSHKK 250 (277)
Q Consensus 208 ~LVa~GGiiGY~kaGS-------i~SL~aGl~fG~lLl~aGygSLk~~k~ 250 (277)
....+-.++..+.+|| ...+..|+++|.+ +.+...+.+.+
T Consensus 5 ~~~~~l~~~WllLsg~~~~~~~s~~~l~~Gll~~~~---v~~l~~~~~~~ 51 (168)
T PRK08383 5 TAFIWSYVLWLVLTAGSKGLLWSPEELIAGLIFAAI---VGYATRNIIGE 51 (168)
T ss_pred HHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHH---HHHHHhccccc
Confidence 3334556778888887 6789999999987 55665555543
No 123
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=30.94 E-value=45 Score=29.23 Aligned_cols=24 Identities=38% Similarity=0.400 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhh
Q 023802 94 AKESEEAWKQTLAAFREQAIKMQS 117 (277)
Q Consensus 94 ~ees~E~Wkq~L~~fkeqa~kmq~ 117 (277)
.++.+|+|+++-..+.|-+.++..
T Consensus 58 n~~~~e~l~~~~~kl~et~~~L~k 81 (155)
T PF07464_consen 58 NPEAEEALKQLKTKLEETAEKLRK 81 (155)
T ss_dssp SSTHHHHHHHHHHHHHHHHHGGGG
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHh
Confidence 334555555555555555544443
No 124
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=30.91 E-value=2.8e+02 Score=22.24 Aligned_cols=71 Identities=14% Similarity=0.093 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHH
Q 023802 97 SEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEA 170 (277)
Q Consensus 97 s~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~a 170 (277)
..+..+.+++..++-...++.+-..|=+.--.....+|++-.+..+.+..-.+ ++-...+.+|+ +.||...
T Consensus 82 ~~~~l~~~l~~E~~~~~~y~~~~~~A~~~~D~~t~~~l~~~~~~e~~h~~~l~-~~l~~~~~~g~--~~~~~~~ 152 (153)
T cd00907 82 VPEMLENDLALEYEAIAALNEAIALCEEVGDYVSRDLLEEILEDEEEHIDWLE-TQLDLIDKMGL--QNYLQSQ 152 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCH--HHHHHhc
Confidence 45777888877776666665555545444455566677777666777766666 45566677887 8998753
No 125
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=30.85 E-value=3e+02 Score=22.60 Aligned_cols=60 Identities=27% Similarity=0.251 Sum_probs=37.1
Q ss_pred cChhhHHHHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHH------HHHHHHHHHHHHHHHhhH
Q 023802 92 ASAKESEEAWKQTLAAFREQAIKMQSVSQE---AYEIYSKRATAI------LKETAEQLKIEAEKARKD 151 (277)
Q Consensus 92 ~~~ees~E~Wkq~L~~fkeqa~kmq~~s~e---aY~vys~ka~~v------L~etse~L~iqa~ka~~~ 151 (277)
.+.+.+.+.....|++|.-...|.|.+..- -.+-|.+-...| .++..++||.+.+.||..
T Consensus 42 e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~ 110 (139)
T PF05615_consen 42 EESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRV 110 (139)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888999999999999998887542 344444333333 334445555555555543
No 126
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=30.82 E-value=4.8e+02 Score=24.84 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 023802 120 QEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKE 158 (277)
Q Consensus 120 ~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake 158 (277)
+..++---++.+.=|.+|+++.+--.+++++|+-.+.++
T Consensus 66 qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~ 104 (230)
T PF03904_consen 66 QDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQD 104 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777778888888888888888888776654
No 127
>COG3759 Predicted membrane protein [Function unknown]
Probab=30.78 E-value=1e+02 Score=26.70 Aligned_cols=43 Identities=26% Similarity=0.206 Sum_probs=32.2
Q ss_pred hhHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 023802 205 PYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRS 247 (277)
Q Consensus 205 pYg~LVa~GGiiGY~kaGSi~SL~aGl~fG~lLl~aGygSLk~ 247 (277)
.|-++++.|=+.|-...++-.-=+.=.+.+.++.++-||++-.
T Consensus 57 lYNgfL~~~li~gl~f~~~~~~~~~~~~l~~v~~aa~~Galts 99 (121)
T COG3759 57 LYNGFLGAGLVYGLFFSGAGGAEIALFFLGCVLVAAIYGALTS 99 (121)
T ss_pred hHHHHHHHHHHHheeecCCCchHHHHHHHHHHHHHHHHhhhcc
Confidence 4778888888888888876433345566778888888998866
No 128
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=30.70 E-value=3e+02 Score=23.22 Aligned_cols=55 Identities=27% Similarity=0.307 Sum_probs=31.2
Q ss_pred HHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHHH-HHHhhCCCCc-hhHHHHHHH
Q 023802 208 LLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIAS-LRSHKKGKTS-PVALKGQAG 263 (277)
Q Consensus 208 ~LVa~GGiiGY~kaGSi~SL~aGl~fG~lLl~aGygS-Lk~~k~gk~s-~l~L~~Sav 263 (277)
+-+.+|-.+. ...|..+-.-+|.+.|.++...--+- ++-.|+||.. |++-.++..
T Consensus 33 ~gl~~g~~l~-~~~~~w~~~p~~~lig~~l~v~~gg~~l~rlKRGrPe~yl~r~l~~~ 89 (111)
T TIGR03750 33 AGLVLGLLLA-LLAGPWALIPTGALLGPILVVLIGGKLLARLKRGKPEGYLYRKLEWK 89 (111)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCchHHHHHHHHH
Confidence 3333443333 33445555556677776644333333 6888999854 777777743
No 129
>cd00068 GGL G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors
Probab=30.60 E-value=82 Score=23.03 Aligned_cols=41 Identities=37% Similarity=0.510 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcCchh
Q 023802 133 ILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEV 177 (277)
Q Consensus 133 vL~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaensp~v 177 (277)
.++...||||.+++.-|--.+..|+++ +.|...-+++-|-|
T Consensus 3 ~~~~~veqLr~el~~~RikvS~a~~~l----~~y~e~~~~~Dpll 43 (57)
T cd00068 3 QLKKEVEQLRKELSRERLKVSKAAAEL----LKYCEQNAENDPLL 43 (57)
T ss_pred HHHHHHHHHHHHHCCchhhHHHHHHHH----HHHHHhcCCCCCCC
Confidence 467788999999999888888888877 45877777777743
No 130
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=30.58 E-value=2.9e+02 Score=26.09 Aligned_cols=47 Identities=19% Similarity=0.284 Sum_probs=31.7
Q ss_pred hhhHHHHHHhhHHHHHhc-----CChhHHHHHHHHHHHHHHHHHHHHHHhhC
Q 023802 204 IPYGLLLTLGGFISFMVT-----GSIPAIRFGVILGGTLLALSIASLRSHKK 250 (277)
Q Consensus 204 ipYg~LVa~GGiiGY~ka-----GSi~SL~aGl~fG~lLl~aGygSLk~~k~ 250 (277)
+.-|++..+-||.-|+-+ |=+.-++.|++-|.+.++.=|-.||..-|
T Consensus 103 l~lg~~aLlsgitaff~~nA~~~GlItlll~a~vgGfamy~my~y~yr~~ad 154 (226)
T COG4858 103 LFLGAMALLSGITAFFQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYRMRAD 154 (226)
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence 344566667788999876 44555666777777766666677776553
No 131
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=30.41 E-value=1.6e+02 Score=20.46 Aligned_cols=38 Identities=13% Similarity=0.279 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhh
Q 023802 129 RATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKY 166 (277)
Q Consensus 129 ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkey 166 (277)
.|..-..+.-+++....++....|..+.+.+..-...|
T Consensus 44 ~a~~af~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~~ 81 (86)
T PF06013_consen 44 EAADAFQDKFEEWNQAFRQLNEALEELSQALRQAAQNY 81 (86)
T ss_dssp STSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555566666666666666666666555444
No 132
>TIGR01760 tape_meas_TP901 phage tail tape measure protein, TP901 family, core region. This model represents a reasonably well conserved core region of a family of phage tail proteins. The member from phage TP901-1 was characterized as a tail length tape measure protein in that a shortened form of the protein leads to phage with proportionately shorter tails.
Probab=30.22 E-value=1.6e+02 Score=26.94 Aligned_cols=48 Identities=17% Similarity=0.206 Sum_probs=27.0
Q ss_pred HHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcCchhhHHHhhcCCCCcccccccccc
Q 023802 141 LKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEVKEIVETFTLPTEDVKEFSTLR 198 (277)
Q Consensus 141 L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaensp~vK~i~et~~~~~e~~~~~s~mH 198 (277)
+.-+.++.+..+..+...+|+. -.|.++++++.++...+...++.+-|
T Consensus 284 ~~~~~~~l~~~~~~~~~~ig~~----------l~p~l~~~~~~~~~~~~~~~~~~~~~ 331 (350)
T TIGR01760 284 LKGQLKLLQNAIENAFIELGEA----------LLPALRELAQALTKLINAINGLAKEN 331 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHHHHHHHHHhhHhC
Confidence 3445555666666666666653 24667777776666544444444433
No 133
>PRK04201 zinc transporter ZupT; Provisional
Probab=30.07 E-value=2.5e+02 Score=25.69 Aligned_cols=41 Identities=24% Similarity=0.478 Sum_probs=28.1
Q ss_pred ccccccceechhhHHHHHHhhHHHHHhcCC-hhHHHHHHHHH
Q 023802 194 FSTLRDFYLGIPYGLLLTLGGFISFMVTGS-IPAIRFGVILG 234 (277)
Q Consensus 194 ~s~mHDFclgipYg~LVa~GGiiGY~kaGS-i~SL~aGl~fG 234 (277)
.++.+-+++.+.+++.--+|+++||+..+. ......|.++|
T Consensus 178 ~s~~~~~~~~~~~~l~~p~G~~~g~~~~~~~~~~~~~~~~l~ 219 (265)
T PRK04201 178 GSKKKAFLYSFLSGLAEPLGAVLGYLLLGPFISPVVMGAIFA 219 (265)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHH
Confidence 345566777888999999999999987642 34444444433
No 134
>PRK13954 mscL large-conductance mechanosensitive channel; Provisional
Probab=29.90 E-value=59 Score=27.71 Aligned_cols=25 Identities=20% Similarity=0.562 Sum_probs=21.6
Q ss_pred hhHHHHHhcCChhHHHHHHHHHHHH
Q 023802 213 GGFISFMVTGSIPAIRFGVILGGTL 237 (277)
Q Consensus 213 GGiiGY~kaGSi~SL~aGl~fG~lL 237 (277)
-|+--|+.+|++.-|+.|++.|++.
T Consensus 3 keFk~Fi~rGNVidLAVaVvIG~AF 27 (119)
T PRK13954 3 KEFKEFALKGNVLDLAIAVVMGAAF 27 (119)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3677899999999999999999883
No 135
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=29.85 E-value=85 Score=22.27 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=24.3
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHH-HHhhCCC
Q 023802 221 TGSIPAIRFGVILGGTLLALSIASL-RSHKKGK 252 (277)
Q Consensus 221 aGSi~SL~aGl~fG~lLl~aGygSL-k~~k~gk 252 (277)
.+|+.++++|++.|.+++.+-+.=| .-+|+++
T Consensus 2 p~s~IaIIv~V~vg~~iiii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 2 PSSTIAIIVAVVVGMAIIIICMFYYACCYKKHR 34 (38)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3689999999999999988877644 3445544
No 136
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=29.77 E-value=94 Score=29.10 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=35.2
Q ss_pred hhhHHHhhcCCCC-cccccccccccceechhhHHHHHHhhHHHHHhcCChhHHHHHHHHHHH
Q 023802 176 EVKEIVETFTLPT-EDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGT 236 (277)
Q Consensus 176 ~vK~i~et~~~~~-e~~~~~s~mHDFclgipYg~LVa~GGiiGY~kaGSi~SL~aGl~fG~l 236 (277)
..+.|.++|.-.- +|++ ==.|+...+.+.++++-++||+...=+.-++.|+++|.+
T Consensus 9 ~~~Qi~q~y~~trk~dp~-----l~~~ml~a~l~~~~v~v~ig~l~~~~~~~~i~gi~~g~l 65 (224)
T PF13829_consen 9 RRKQIWQAYKMTRKEDPK-----LPWLMLGAFLGPIAVFVLIGLLFGSWWYWLIIGILLGLL 65 (224)
T ss_pred HHHHHHHHHHHHHHHCcc-----hHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 5666777665431 1111 112444556666777888888888667778888887776
No 137
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=29.63 E-value=2.9e+02 Score=23.97 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=17.9
Q ss_pred ceechhhHHHHHHhhHHHHHhc
Q 023802 200 FYLGIPYGLLLTLGGFISFMVT 221 (277)
Q Consensus 200 FclgipYg~LVa~GGiiGY~ka 221 (277)
|..|..|..=.++||+.|+++.
T Consensus 36 ~~~G~ay~~G~~~Gg~~Gl~~G 57 (149)
T TIGR00983 36 FGTGTCYLTGLAIGALNGLRLG 57 (149)
T ss_pred hhHhHHHHHHHHHHHHHHHHHH
Confidence 4567888888999999988873
No 138
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=29.51 E-value=3.4e+02 Score=22.71 Aligned_cols=35 Identities=6% Similarity=0.190 Sum_probs=23.8
Q ss_pred hhhhcChhhHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 023802 88 SEIKASAKESEEAWKQTLAAFREQAIKMQSVSQEA 122 (277)
Q Consensus 88 ~~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s~ea 122 (277)
++...+.++..+.+++.|...+.+|..+-.-....
T Consensus 46 e~~~~eA~~~~~~~e~~L~~A~~ea~~ii~~A~~~ 80 (159)
T PRK09173 46 RRLREEAQQLLAEYQRKRKEAEKEAADIVAAAERE 80 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666777888888888888887765444333
No 139
>PRK03980 flap endonuclease-1; Provisional
Probab=29.41 E-value=77 Score=29.92 Aligned_cols=62 Identities=26% Similarity=0.369 Sum_probs=41.0
Q ss_pred eeEEeeccccCCCchhhhhhhcChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023802 71 STVVFSASHEESSSEESSEIKASAKESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLK 142 (277)
Q Consensus 71 ~~~~~a~s~e~s~~~e~~~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~ 142 (277)
.++||=+......+.+.++.+...+++.+.|++++++ +-..+|+. |.+|+..|-.+..+.++
T Consensus 28 PvfVFDG~~p~~K~~~~~~rk~~R~~a~~~~~~~~~~---------g~~~~a~k-~~~~~~~vt~~~~~~~k 89 (292)
T PRK03980 28 PVYVFDGKPPELKAEEIEERREVREEAEEKYEEAKEE---------GDLEEARK-YAQRSSRLTDEIVEDSK 89 (292)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHHhHHHHHHHHHc---------CCHHHHHH-HHhccccCCHHHHHHHH
Confidence 5899988887777777677777788899999987652 33355544 45665555444444444
No 140
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=29.40 E-value=2.3e+02 Score=24.30 Aligned_cols=56 Identities=21% Similarity=0.347 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhhHHH
Q 023802 94 AKESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRA-----------TAILKETAEQLKIEAEKARKDLT 153 (277)
Q Consensus 94 ~ees~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka-----------~~vL~etse~L~iqa~ka~~~L~ 153 (277)
.+...|+|++.++.++.+ -.++++-.++-..=. ...|.-+.|+|+.+.++|+++..
T Consensus 82 ~~~~~~~w~~~~~~~~~~----~~L~~~d~e~L~~lg~~LG~~D~~~Q~k~i~l~~~~L~~~~~~a~~~~~ 148 (170)
T PF09548_consen 82 GESFAEAWEEAVEKLLKE----SALKKEDKEILLELGKSLGYSDREMQEKHIELYLEQLEQQLEEAREEAK 148 (170)
T ss_pred CCCHHHHHHHHHHhhhhc----CCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999986521 223333333322211 13456677777777777775543
No 141
>PHA01080 hypothetical protein
Probab=28.98 E-value=58 Score=26.36 Aligned_cols=24 Identities=17% Similarity=0.045 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-HHHh
Q 023802 224 IPAIRFGVILGGTLLALSIAS-LRSH 248 (277)
Q Consensus 224 i~SL~aGl~fG~lLl~aGygS-Lk~~ 248 (277)
-++-+||++||.. .++||.| |++.
T Consensus 48 ~~~qaFglgF~~V-~~lgyls~YaVk 72 (80)
T PHA01080 48 DAGTAFSFGFMAV-FALGYLSTYAVY 72 (80)
T ss_pred HHHHHHhhhHHHH-HHhhhhHHHHHH
Confidence 4567899999887 6788887 6653
No 142
>PF11351 DUF3154: Protein of unknown function (DUF3154); InterPro: IPR021497 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=28.97 E-value=3.4e+02 Score=22.57 Aligned_cols=58 Identities=19% Similarity=0.140 Sum_probs=27.2
Q ss_pred cccccccceechhhHHHHHHhhHHHHHhcCC--hhHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 023802 193 EFSTLRDFYLGIPYGLLLTLGGFISFMVTGS--IPAIRFGVILGGTLLALSIASLRSHKKGKT 253 (277)
Q Consensus 193 ~~s~mHDFclgipYg~LVa~GGiiGY~kaGS--i~SL~aGl~fG~lLl~aGygSLk~~k~gk~ 253 (277)
|...+.=.+++|.|..++.--++...+.... ++--...++-.+ ++||+..|.|-+.+.
T Consensus 62 RP~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~vpe~lw~Llg~~---vlgy~~~Rs~eK~~~ 121 (123)
T PF11351_consen 62 RPALGWVCLLLFAWAFMLDPLWFWARMQAQALQVPEPLWWLLGAG---VLGYFGARSQEKRKG 121 (123)
T ss_pred ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccCCHHHHHHHHHH---HhhhHHHhhHHHHhc
Confidence 4555555555555553333333333333322 232233333233 367788888777654
No 143
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=28.74 E-value=93 Score=26.87 Aligned_cols=17 Identities=12% Similarity=0.245 Sum_probs=8.7
Q ss_pred HHHHhhHHHHHHHHhhh
Q 023802 145 AEKARKDLTVVAKELSE 161 (277)
Q Consensus 145 a~ka~~~L~~~ake~~e 161 (277)
.++.|..|..-+..+.+
T Consensus 54 ~~~~r~~l~~Y~~~vv~ 70 (209)
T PF14023_consen 54 RDEIRALLRAYTRAVVD 70 (209)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 44555555555554444
No 144
>PRK02946 aceK bifunctional isocitrate dehydrogenase kinase/phosphatase protein; Validated
Probab=28.54 E-value=1.4e+02 Score=31.70 Aligned_cols=97 Identities=19% Similarity=0.226 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 023802 97 SEEAWKQTLAAFREQAIKMQSVSQEA-------------------YEIYSKRATAILKETAEQLKIEAEKARKDLTVVAK 157 (277)
Q Consensus 97 s~E~Wkq~L~~fkeqa~kmq~~s~ea-------------------Y~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ak 157 (277)
++..=+.+|+-|..+=...+.+|..| -+.|-.+ ..++.++|+...+....|-.....
T Consensus 6 a~~iA~~Il~GFd~~y~~F~~iT~~A~~rFE~adW~~~q~a~~~RI~lYd~~----V~~~v~~l~~~~~~~~~d~~~W~~ 81 (575)
T PRK02946 6 ALLIAQTILQGFDAHYARFREITAGAQQRFEQADWHAVQRAAKERIHLYDHR----VGEVVEQLRAELDAESTDDEFWQR 81 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccCCHHHHHH
Confidence 34444556666655555555554444 3344444 466778887655554444433222
Q ss_pred HhhhhhhhhHhHHhhcCchhhHHHhh-cCCCCcccccccccccceec
Q 023802 158 ELSEDGKKYLTEATENNPEVKEIVET-FTLPTEDVKEFSTLRDFYLG 203 (277)
Q Consensus 158 e~~e~gkeyl~~aaensp~vK~i~et-~~~~~e~~~~~s~mHDFclg 203 (277)
=|........|.|. -||.|| |+|..-++-.+..+|++++-
T Consensus 82 -----vK~~Y~~ll~~~~~-~EiAETFfNSV~~rlf~~~~~~~d~~F 122 (575)
T PRK02946 82 -----VKLHYIGLLPDHPQ-PELAETFFNSVYCRLFHHRYFDNDFLF 122 (575)
T ss_pred -----HHHHHHHHHcCCCc-hhHHHHHHHHhhhhhcccCcccCceEE
Confidence 24445556667773 489999 56666567777788877653
No 145
>PF11780 DUF3318: Protein of unknown function (DUF3318); InterPro: IPR021751 This is a bacterial family of uncharacterised proteins.
Probab=28.51 E-value=98 Score=26.88 Aligned_cols=23 Identities=13% Similarity=0.055 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCCch
Q 023802 233 LGGTLLALSIASLRSHKKGKTSP 255 (277)
Q Consensus 233 fG~lLl~aGygSLk~~k~gk~s~ 255 (277)
.|.++.++++..||+|++.++..
T Consensus 106 ~~la~Gla~~~~~riwq~~~~~~ 128 (146)
T PF11780_consen 106 WGLAGGLAAWAAYRIWQQNRSPQ 128 (146)
T ss_pred HHHHHHHHHHHHHHHHHHccCcc
Confidence 34344447888999999988743
No 146
>PRK00567 mscL large-conductance mechanosensitive channel; Reviewed
Probab=28.48 E-value=82 Score=27.17 Aligned_cols=25 Identities=28% Similarity=0.643 Sum_probs=21.5
Q ss_pred hhHHHHHhcCChhHHHHHHHHHHHH
Q 023802 213 GGFISFMVTGSIPAIRFGVILGGTL 237 (277)
Q Consensus 213 GGiiGY~kaGSi~SL~aGl~fG~lL 237 (277)
-|+--|+.+|++.-|+.|++.|++.
T Consensus 3 ~~FK~Fi~rGNVidLAVaVIIG~AF 27 (134)
T PRK00567 3 KEFKEFAMRGNVVDLAVGVIIGAAF 27 (134)
T ss_pred HHHHHHHHccchHHHHHHHHHHHHH
Confidence 3677799999999999999999874
No 147
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=28.48 E-value=2.9e+02 Score=23.34 Aligned_cols=46 Identities=26% Similarity=0.182 Sum_probs=27.4
Q ss_pred cCChhHHHHHHHHHHHH-HHHHHHHHHHhhCCCCc-hhHHHHHHHHHH
Q 023802 221 TGSIPAIRFGVILGGTL-LALSIASLRSHKKGKTS-PVALKGQAGQRV 266 (277)
Q Consensus 221 aGSi~SL~aGl~fG~lL-l~aGygSLk~~k~gk~s-~l~L~~SavLAa 266 (277)
.|+.+-.-++.+.|.++ +..|=.-++-.|+||.. |++--++--++.
T Consensus 48 ~g~~a~~pt~~ll~~~~~v~~gg~~l~rlKRGKP~~yl~r~l~~~l~~ 95 (121)
T PF11990_consen 48 TGWWAMIPTGALLGPILGVFVGGKLLARLKRGKPEGYLYRRLQWRLAR 95 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCchhHHHHHHHHHHHH
Confidence 67764334444444433 23333456888999975 788777766554
No 148
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=28.45 E-value=1.9e+02 Score=25.13 Aligned_cols=56 Identities=21% Similarity=0.278 Sum_probs=34.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhhHH
Q 023802 93 SAKESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRA-----------TAILKETAEQLKIEAEKARKDL 152 (277)
Q Consensus 93 ~~ees~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka-----------~~vL~etse~L~iqa~ka~~~L 152 (277)
+.+...|+|++.++..+.+ -.++++-+++-.+=. ...+.-+-|+|+.|.++|+++-
T Consensus 81 ~g~s~~~~w~~~~~~~~~~----~~L~~~d~eiL~~lG~~LG~~D~e~Q~k~i~L~~~~L~~~~~~a~~~~ 147 (170)
T TIGR02833 81 EGLTVYEAWKKALNEVWKQ----TALQKSEKEILLQFGKTLGESDREGQQKHINLTLEHLERQLTEAEDEQ 147 (170)
T ss_pred CCCCHHHHHHHHHHHhhhc----cCCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477999999999887532 244444444432211 1346667777777777777553
No 149
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=28.41 E-value=2.7e+02 Score=24.48 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=11.0
Q ss_pred ceechhhHHHHH-HhhHHHHHh
Q 023802 200 FYLGIPYGLLLT-LGGFISFMV 220 (277)
Q Consensus 200 FclgipYg~LVa-~GGiiGY~k 220 (277)
..+|-.||++++ ++.+++++.
T Consensus 43 vllGP~~g~~~a~i~~ll~~l~ 64 (160)
T TIGR02359 43 VLLGPWYALAVAFIIGLLRNTL 64 (160)
T ss_pred HHHchHHHHHHHHHHHHHHHHh
Confidence 345555665553 344555554
No 150
>PRK13953 mscL large-conductance mechanosensitive channel; Provisional
Probab=28.26 E-value=65 Score=27.62 Aligned_cols=25 Identities=20% Similarity=0.521 Sum_probs=21.3
Q ss_pred hhHHHHHhcCChhHHHHHHHHHHHH
Q 023802 213 GGFISFMVTGSIPAIRFGVILGGTL 237 (277)
Q Consensus 213 GGiiGY~kaGSi~SL~aGl~fG~lL 237 (277)
-|+-.|+.+|++.-|+.|++.|++.
T Consensus 3 ~eFk~Fi~rGNVidLAVavIiG~AF 27 (125)
T PRK13953 3 VEFRDFALKGNVLDLAVAVVIGAAF 27 (125)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3677899999999999999999873
No 151
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=28.22 E-value=3.6e+02 Score=22.68 Aligned_cols=12 Identities=17% Similarity=0.149 Sum_probs=4.9
Q ss_pred HHhhhhhHHHHH
Q 023802 113 IKMQSVSQEAYE 124 (277)
Q Consensus 113 ~kmq~~s~eaY~ 124 (277)
.+++..-.||-+
T Consensus 81 ~~L~~A~~ea~~ 92 (156)
T CHL00118 81 QELSKARKEAQL 92 (156)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 152
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=27.89 E-value=3.8e+02 Score=27.11 Aligned_cols=88 Identities=20% Similarity=0.284 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHH---------------HHHHHHHHHHHHHHHH----HHHHHhhHHHHHHHHh
Q 023802 99 EAWKQTLAAFREQAIKMQSVSQEAYEIYS---------------KRATAILKETAEQLKI----EAEKARKDLTVVAKEL 159 (277)
Q Consensus 99 E~Wkq~L~~fkeqa~kmq~~s~eaY~vys---------------~ka~~vL~etse~L~i----qa~ka~~~L~~~ake~ 159 (277)
+..++.++-+|+.+..+.++.....-.|. +.++.+|++..+.|.. ..|..+..+..++++.
T Consensus 353 ~~~~~~~~l~~~~~~~l~d~~~~~~~ff~~~~~~~~~~~~~~l~~~~~~~L~~l~~~L~~l~~~~~e~i~~~i~~iak~~ 432 (476)
T PRK01406 353 PYLEKVVPLLKERAKTLKELAELARFFFEDFPEYDEDAAKKHLKEVAREVLEALLEKLEALEEWTAEAIEAAIKAVAEEL 432 (476)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhcCCcccChHHHHHhcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 34577788888888888877765533332 2235566666666643 2456666777778877
Q ss_pred hhhhhhhHhH------HhhcCchhhHHHhhcCC
Q 023802 160 SEDGKKYLTE------ATENNPEVKEIVETFTL 186 (277)
Q Consensus 160 ~e~gkeyl~~------aaensp~vK~i~et~~~ 186 (277)
+-++++...- =..+.|++-++.+.++-
T Consensus 433 gik~k~lf~pLR~ALtG~~~GP~L~~il~lLGk 465 (476)
T PRK01406 433 GLKGGKLFMPLRVALTGRTVGPPLFESMELLGK 465 (476)
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHhCH
Confidence 7777764322 13566677777766543
No 153
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=27.74 E-value=4.9e+02 Score=24.00 Aligned_cols=28 Identities=14% Similarity=0.264 Sum_probs=17.7
Q ss_pred hhhcChhhHHHHHHHHHHHHHHHHHHhh
Q 023802 89 EIKASAKESEEAWKQTLAAFREQAIKMQ 116 (277)
Q Consensus 89 ~~~~~~ees~E~Wkq~L~~fkeqa~kmq 116 (277)
+.+.+.++..+..++-|...++++..|-
T Consensus 50 ~~~~eA~~~~~e~e~~l~~a~~ea~~ii 77 (250)
T PRK14474 50 QRQQEAGQEAERYRQKQQSLEQQRASFM 77 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556677777777777776653
No 154
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=27.56 E-value=2.3e+02 Score=27.89 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=19.4
Q ss_pred ccccceechhhHHHHH-HhhHHHHHhcCC
Q 023802 196 TLRDFYLGIPYGLLLT-LGGFISFMVTGS 223 (277)
Q Consensus 196 ~mHDFclgipYg~LVa-~GGiiGY~kaGS 223 (277)
....+++|+..|++++ ++|+++|+..|+
T Consensus 355 ~~~e~~v~~~~g~~~g~~~~~~~~~~~~~ 383 (449)
T TIGR00400 355 ILREICVSILVGAILASVNFLRIVFFQGK 383 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3578888888887766 456666666554
No 155
>PHA00490 terminal protein
Probab=27.54 E-value=61 Score=30.79 Aligned_cols=101 Identities=22% Similarity=0.341 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcC
Q 023802 97 SEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRAT--AILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENN 174 (277)
Q Consensus 97 s~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~--~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaens 174 (277)
--.+||+--++|-..|-+==..-+.+|.|-.-||. +|+++|-|-- .-+|+ +-+++-+ +||++-- .+
T Consensus 56 qFN~wK~~aeSFTnRaN~~yQFvKN~YGvVaSKaki~EI~~nTKeaQ-rvvde-------~~~~~~D--ke~isGG--k~ 123 (266)
T PHA00490 56 QFNAWKKRAESFTNRANRDYQFVKNEYGVVASKAKIDEIESNTKEAQ-RVVDE-------ILDRFND--KEVISGG--KS 123 (266)
T ss_pred HHHHHHHHHHhhhcccccchhhhccchheeeeHhHHHHHHhccHHHH-HHHHH-------HHHHhcC--cceeeCC--CC
Confidence 34589999999998887666666788999888875 5777774432 22332 2333322 4444321 11
Q ss_pred c-hhhHHHhhcCCCCcccccccccccceech--hhHHHHH
Q 023802 175 P-EVKEIVETFTLPTEDVKEFSTLRDFYLGI--PYGLLLT 211 (277)
Q Consensus 175 p-~vK~i~et~~~~~e~~~~~s~mHDFclgi--pYg~LVa 211 (277)
- .|-+=.|- .++. +..+....|||-+.= .|..|=.
T Consensus 124 qGTvgqr~~l-lsp~-~vtG~~Rp~DFdF~kVrsy~rLrt 161 (266)
T PHA00490 124 QGTVGQRKEL-LSPP-DVTGFGRPEDFDFNKVRSYERLRT 161 (266)
T ss_pred CCcHhhhhhh-cCCc-ccCCCCChhccChHHHHHHHHHHH
Confidence 1 34333333 3434 578889999997743 3554433
No 156
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=27.51 E-value=5.3e+02 Score=24.31 Aligned_cols=22 Identities=9% Similarity=-0.050 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhhhhhHHHH
Q 023802 102 KQTLAAFREQAIKMQSVSQEAY 123 (277)
Q Consensus 102 kq~L~~fkeqa~kmq~~s~eaY 123 (277)
+..|+.+.....+=..++.+..
T Consensus 333 ~~ll~~l~~~~~~~~~~~~~~~ 354 (511)
T PF09972_consen 333 RALLDWLFNASGDDNVFSLKEL 354 (511)
T ss_pred HHHHHHHhccCCCCceeccchh
Confidence 5667777666533334444444
No 157
>PRK13955 mscL large-conductance mechanosensitive channel; Provisional
Probab=27.42 E-value=87 Score=27.03 Aligned_cols=25 Identities=24% Similarity=0.623 Sum_probs=21.4
Q ss_pred hhHHHHHhcCChhHHHHHHHHHHHH
Q 023802 213 GGFISFMVTGSIPAIRFGVILGGTL 237 (277)
Q Consensus 213 GGiiGY~kaGSi~SL~aGl~fG~lL 237 (277)
-|+--|+.+|++.-|+.|++.|++.
T Consensus 3 ~eFK~Fi~rGNVidLAVgVVIG~AF 27 (130)
T PRK13955 3 NEFKKFAFKGNVIDLAVGVVIGAAF 27 (130)
T ss_pred HHHHHHHHccchHHHHHHHHHHHHH
Confidence 4677899999999999999999873
No 158
>PF04474 DUF554: Protein of unknown function (DUF554); InterPro: IPR007563 This is a family of uncharacterised prokaryotic proteins. Multiple predicted transmembrane regions suggest that the protein is membrane associated.
Probab=27.32 E-value=4.2e+02 Score=24.71 Aligned_cols=62 Identities=27% Similarity=0.398 Sum_probs=35.1
Q ss_pred hhhHHHHHHhhHHHHHhcCChhH-HHHHHH--HHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHH
Q 023802 204 IPYGLLLTLGGFISFMVTGSIPA-IRFGVI--LGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYF 269 (277)
Q Consensus 204 ipYg~LVa~GGiiGY~kaGSi~S-L~aGl~--fG~lLl~aGygSLk~~k~gk~s~l~L~~SavLAavm~ 269 (277)
+.=++.+.+||++|.+..+.++- +.-.+. +|...++.|+. -+.+ + +..+.+..+.++.+++|
T Consensus 5 iiN~~aIl~G~~iG~~~~~~i~~~~~~~l~~~~Gl~~l~iGi~--~~~~-~-~~~~~vi~slvlG~iiG 69 (226)
T PF04474_consen 5 IINALAILLGGLIGLLLGRRIPERIKDTLMQALGLCVLAIGIS--MALK-G-QNPLLVILSLVLGTIIG 69 (226)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhHHHHHHHHH--HHHc-c-CccHHHHHHHHHHHHHH
Confidence 44567888999999988776642 222222 23333334432 1222 2 44566667777777774
No 159
>PF03073 TspO_MBR: TspO/MBR family; InterPro: IPR004307 Members of this group are involved in transmembrane signalling. In both prokaryotes and mitochondria they are localized to the outer membrane, and have been shown to bind and transport dicarboxylic tetrapyrrole intermediates of the haem biosynthetic pathway [, ]. They are associated with the major outer membrane porins (in prokaryotes) and with the voltage-dependent anion channel (in mitochondria) []. Rhodobacter sphaeroides TspO (previously CrtK) is involved in signal transduction, functioning as a negative regulator of the expression of some photosynthesis genes (PpsR/AppA repressor/antirepressor regulon). This down-regulation is believed to be in response to oxygen levels. TspO works through (or modulates) the PpsR/AppA system and acts upstream of the site of action of these regulatory proteins []. It has been suggested that the TspO regulatory pathway works by regulating the efflux of certain tetrapyrrole intermediates of the haem/bacteriochlorophyll biosynthetic pathways in response to the availability of molecular oxygen, thereby causing the accumulation of a biosynthetic intermediate that serves as a corepressor for the regulated genes []. A homologue of the TspO protein in Rhizobium meliloti (Sinorhizobium meliloti) is involved in regulating expression of the ndi locus in response to stress conditions []. There is evidence that the S. meliloti TspO acts through, or in addition to, the FixL regulatory system. In animals, the peripheral-type benzodiazepine receptor (PBR, MBR) is a mitochondrial protein (located in the outer mitochondrial membrane) characterised by its ability to bind with nanomolar affinity to a variety of benzodiazepine-like drugs, as well as to dicarboxylic tetrapyrrole intermediates of the haem biosynthetic pathway. Depending upon the tissue, it was shown to be involved in steroidogenesis, haem biosynthesis, apoptosis, cell growth and differentiation, mitochondrial respiratory control, and immune and stress response, but the precise function of the PBR remains unclear. The role of PBR in the regulation of cholesterol transport from the outer to the inner mitochondrial membrane, the rate-determining step in steroid biosynthesis, has been studied in detail. PBR is required for the binding, uptake and release, upon ligand activation, of the substrate cholesterol []. PBR forms a multimeric complex with the voltage-dependent anion channel (VDAC) [] and adenine nucleotide carrier []. Molecular modeling of PBR suggested that it might function as a channel for cholesterol. Indeed, cholesterol uptake and transport by bacterial cells was induced upon PBR expression. Mutagenesis studies identified a cholesterol recognition/interaction motif (CRAC) in the cytoplasmic C terminus of PBR [, ]. In complementation experiments, rat PBR (pk18) functionally substitutes for its homologue TspO in R. sphaeroides, negatively affecting transcription of specific photosynthesis genes []. This suggests that PBR may function as an oxygen sensor, transducing an oxygen-triggered signal leading to an adaptive cellular response. These observations suggest that fundamental aspects of this receptor and the downstream signal transduction pathway are conserved in bacteria and higher eukaryotic mitochondria. The alpha-3 subdivision of the purple bacteria is considered to be a likely source of the endosymbiont that ultimately gave rise to the mitochondrion. Therefore, it is possible that the mammalian PBR remains both evolutionarily and functionally related to the TspO of R. sphaeroides.; GO: 0016021 integral to membrane
Probab=27.26 E-value=3.6e+02 Score=22.43 Aligned_cols=44 Identities=23% Similarity=0.367 Sum_probs=31.5
Q ss_pred HHHHHhhHHHHHhcCCh--------------hHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 023802 208 LLLTLGGFISFMVTGSI--------------PAIRFGVILGGTLLALSIASLRSHKKG 251 (277)
Q Consensus 208 ~LVa~GGiiGY~kaGSi--------------~SL~aGl~fG~lLl~aGygSLk~~k~g 251 (277)
+.++.|.+.|++...+. +.-++|.+=..+-...|+.++++|+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~wy~~L~kP~~~Pp~~~f~~vW~~ly~l~g~a~~~v~~~~ 63 (148)
T PF03073_consen 6 APLVVGFLSGYLTPTDVSEWYDSLKKPSWTPPGWVFGPVWTILYILMGIASYLVWRKG 63 (148)
T ss_pred HHHHHHHHHHHHcCCcchHHHhhccCCCCCCcccHHHHHHHHHHHHHHHHHHhhHhcc
Confidence 34555666666666542 455777777788888999999999975
No 160
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=26.94 E-value=1.5e+02 Score=25.59 Aligned_cols=11 Identities=9% Similarity=-0.043 Sum_probs=6.2
Q ss_pred HHHHHHHHhhC
Q 023802 240 LSIASLRSHKK 250 (277)
Q Consensus 240 aGygSLk~~k~ 250 (277)
+||+-.|.+.+
T Consensus 116 ~g~~~~r~~~~ 126 (154)
T PRK10862 116 GGFLLARGLSR 126 (154)
T ss_pred HHHHHHHHHHH
Confidence 66666665443
No 161
>PF13828 DUF4190: Domain of unknown function (DUF4190)
Probab=26.78 E-value=2.8e+02 Score=20.86 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCCC
Q 023802 231 VILGGTLLALSIASLRSHKKGK 252 (277)
Q Consensus 231 l~fG~lLl~aGygSLk~~k~gk 252 (277)
.++|.+-+.+|+.+++.-++..
T Consensus 17 ~~~~i~aiilG~ial~~i~r~~ 38 (62)
T PF13828_consen 17 GLLGIVAIILGHIALRQIRRSG 38 (62)
T ss_pred HHhHHHHHHHHHHHHHHHhccC
Confidence 4666777778888998887754
No 162
>PRK13952 mscL large-conductance mechanosensitive channel; Provisional
Probab=26.61 E-value=92 Score=27.14 Aligned_cols=26 Identities=35% Similarity=0.746 Sum_probs=21.7
Q ss_pred HhhHHHHHhcCChhHHHHHHHHHHHH
Q 023802 212 LGGFISFMVTGSIPAIRFGVILGGTL 237 (277)
Q Consensus 212 ~GGiiGY~kaGSi~SL~aGl~fG~lL 237 (277)
+=|+=.|+.+|++.-|+.|++.|++.
T Consensus 4 lkeFK~Fi~rGNViDLAVgVIIG~AF 29 (142)
T PRK13952 4 LKEFKEFALKGNVMDLAVGVIIGGAF 29 (142)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34677899999999999999999873
No 163
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function.
Probab=26.56 E-value=1.9e+02 Score=29.69 Aligned_cols=70 Identities=17% Similarity=0.290 Sum_probs=45.4
Q ss_pred HHhhcCchhhHHHhhcCCCCcccccccccccceechhhHHHHHHhhHHHHHhcCChhHHHHHHHHHHH------------
Q 023802 169 EATENNPEVKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGT------------ 236 (277)
Q Consensus 169 ~aaensp~vK~i~et~~~~~e~~~~~s~mHDFclgipYg~LVa~GGiiGY~kaGSi~SL~aGl~fG~l------------ 236 (277)
.+.-+||.||.+.+.+.+...++... |.....++.+.+|+-- .+|+++|++
T Consensus 72 ~~lA~sp~v~r~l~~lA~~p~t~~~A-----------i~lv~~vs~i~s~inW------G~gLV~gallArelarr~~~v 134 (453)
T PF02667_consen 72 YALASSPPVKRLLDRLASLPKTPRQA-----------IVLVALVSMIASWINW------GFGLVVGALLARELARRVKGV 134 (453)
T ss_pred HHHhCChHHHHHHHHHHhcCCCCcce-----------eeHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHhccCC
Confidence 35568999999999998876455432 2334445556665544 456666654
Q ss_pred ----HHHHHHHHHHHhhCCCCch
Q 023802 237 ----LLALSIASLRSHKKGKTSP 255 (277)
Q Consensus 237 ----Ll~aGygSLk~~k~gk~s~ 255 (277)
|.+++|..+-+|..|-++.
T Consensus 135 dYpllvAaaY~g~~vWh~GlSgS 157 (453)
T PF02667_consen 135 DYPLLVAAAYSGFVVWHGGLSGS 157 (453)
T ss_pred cHHHHHHHHHHHHHHHhccccch
Confidence 4667777777777775553
No 164
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=26.53 E-value=4.1e+02 Score=23.84 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=16.0
Q ss_pred ccccceechhhHHHHHHhhHHHHHh
Q 023802 196 TLRDFYLGIPYGLLLTLGGFISFMV 220 (277)
Q Consensus 196 ~mHDFclgipYg~LVa~GGiiGY~k 220 (277)
++-|+| |-.|..=++.||+.++++
T Consensus 12 r~~d~~-G~af~~G~~~G~~~g~~~ 35 (170)
T TIGR00980 12 RILDDF-GGAFAMGTIGGSIFQAFK 35 (170)
T ss_pred hhHHhh-hHHHHHHHHHHHHHHHHH
Confidence 344444 467777777888888874
No 165
>PRK01100 putative accessory gene regulator protein; Provisional
Probab=26.38 E-value=3.6e+02 Score=24.15 Aligned_cols=69 Identities=25% Similarity=0.191 Sum_probs=48.8
Q ss_pred ceechhhHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhCC---CCchhHHHHHHHHHHHHH
Q 023802 200 FYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKG---KTSPVALKGQAGQRVVYF 269 (277)
Q Consensus 200 FclgipYg~LVa~GGiiGY~kaGSi~SL~aGl~fG~lLl~aGygSLk~~k~g---k~s~l~L~~SavLAavm~ 269 (277)
...-+-||.-+.++.++.++..= +.++..|.+.-.++..+++..+|.+--| ++++..+..+.++-.++.
T Consensus 32 ~~~~i~YGl~~il~~i~k~i~il-~i~~i~g~~~~tli~~l~f~~lR~~aGG~Ha~s~~~C~I~S~iifv~~~ 103 (210)
T PRK01100 32 GYLKVKYGLEIILINVSKFAIVY-LIALVTGLLLQTVTVHLSFLWLRRYSFGLHATNSINCTLISLTMFVLGA 103 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHChHHHHHHHHHHHHHHHhccCceecCCCcHHHHHHHHHHHHHH
Confidence 44457899999988888776543 2345666666677888899999998887 566777776666554443
No 166
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=26.37 E-value=3e+02 Score=21.08 Aligned_cols=67 Identities=36% Similarity=0.406 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhh
Q 023802 96 ESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKK 165 (277)
Q Consensus 96 es~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gke 165 (277)
+++..=+++++.-+++|.++. .++-+-=-+.|..++.++-++...+.+++..++..-...+...|.+
T Consensus 17 ~A~~ea~~Ii~~A~~~A~~~~---~~a~~~A~~ea~~ii~~Ak~ei~~e~~~a~~e~k~ev~~L~~~~~~ 83 (85)
T TIGR02926 17 EAEEERKQRIAEAREEARELL---EEAEEEASKLGEEIIKEAEEEIEKEAEKIREEGEKEIEAMKSKAKE 83 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 455555666777776666553 3444445566777888888888888888888887777776666554
No 167
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=26.36 E-value=2.8e+02 Score=25.98 Aligned_cols=51 Identities=20% Similarity=0.196 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023802 97 SEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEK 147 (277)
Q Consensus 97 s~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~k 147 (277)
+-..|+++.+.+.++-.++..-..+.|..+.++-..-|++.-.+++.+...
T Consensus 150 dp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~l~~ 200 (311)
T PRK09545 150 SPEIARATAVAIHDKLVELMPQSKAKLDANLKDFEAQLAQTDKQIGNQLAP 200 (311)
T ss_pred CHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456789999999999999998888888888887666666666666655443
No 168
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=26.36 E-value=4e+02 Score=30.39 Aligned_cols=89 Identities=22% Similarity=0.231 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcC-c
Q 023802 97 SEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENN-P 175 (277)
Q Consensus 97 s~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaens-p 175 (277)
.+++-++-....++|.++|..|-.+|-.---|+-++.+..-+..||.+.+|.+.+=....|.+-.+ -|-.....|-+ .
T Consensus 1050 ~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr~e~ik~~~~~kdK-~e~er~~rE~n~s 1128 (1189)
T KOG1265|consen 1050 YEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKKRMEDIKVDKVIKDK-AERERRKRELNSS 1128 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccH-HHHHHHHHHHHHH
Confidence 334444445556666666666666665555555555554444445554444443222212222221 12222334433 3
Q ss_pred hhhHHHhhcCC
Q 023802 176 EVKEIVETFTL 186 (277)
Q Consensus 176 ~vK~i~et~~~ 186 (277)
.||+.|+...-
T Consensus 1129 ~i~~~V~e~kr 1139 (1189)
T KOG1265|consen 1129 NIKEFVEERKR 1139 (1189)
T ss_pred HHHHHHHHHHH
Confidence 66666665443
No 169
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=26.19 E-value=3.7e+02 Score=26.21 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=9.2
Q ss_pred HHHHHHHHHhhHHHHHHHH
Q 023802 140 QLKIEAEKARKDLTVVAKE 158 (277)
Q Consensus 140 ~L~iqa~ka~~~L~~~ake 158 (277)
.|+.+.+.+++.+..+.+-
T Consensus 359 ~L~Re~~~~~~~Y~~l~~r 377 (498)
T TIGR03007 359 QLNRDYEVNKSNYEQLLTR 377 (498)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555544444443
No 170
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=26.17 E-value=2.1e+02 Score=28.21 Aligned_cols=48 Identities=21% Similarity=0.302 Sum_probs=32.7
Q ss_pred cccceechhhHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHHHH
Q 023802 197 LRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASL 245 (277)
Q Consensus 197 mHDFclgipYg~LVa~GGiiGY~kaGSi~SL~aGl~fG~lLl~aGygSL 245 (277)
+.=..+|+| |+++.+.++.-.+--...+--+.-+++|+.+++=|++=.
T Consensus 158 ~~~~~lGvP-G~~lLiy~i~~l~~~~~~a~~~i~~~iG~yll~kGfgld 205 (344)
T PF04123_consen 158 YRRTFLGVP-GLILLIYAILALLGYPAYALGIILLLIGLYLLYKGFGLD 205 (344)
T ss_pred hhceeecch-HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhcCcH
Confidence 344689999 999999888777665444434445566777777777644
No 171
>COG4395 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.16 E-value=1.8e+02 Score=28.25 Aligned_cols=24 Identities=29% Similarity=0.599 Sum_probs=17.7
Q ss_pred HhhHHHHHhcCChhHHHHHHHHHHH
Q 023802 212 LGGFISFMVTGSIPAIRFGVILGGT 236 (277)
Q Consensus 212 ~GGiiGY~kaGSi~SL~aGl~fG~l 236 (277)
.||++|-+.-| +.++.+|.+|+++
T Consensus 33 ~g~l~ggl~~g-l~~~~~~~~f~gi 56 (281)
T COG4395 33 LGGLAGGLLMG-LSGMFFGGLFFGI 56 (281)
T ss_pred hhHHHHHHHHh-HHHHHHHHHHHHH
Confidence 57788888888 7777777776665
No 172
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=25.91 E-value=4.6e+02 Score=23.13 Aligned_cols=29 Identities=14% Similarity=0.036 Sum_probs=13.0
Q ss_pred HHHHHhcC--ChhHHHHHHHHHHHHHHHHHH
Q 023802 215 FISFMVTG--SIPAIRFGVILGGTLLALSIA 243 (277)
Q Consensus 215 iiGY~kaG--Si~SL~aGl~fG~lLl~aGyg 243 (277)
++-|+... +..-.++-++...+|...|+.
T Consensus 150 llp~~~~~~~~~a~~~s~~~~~~~L~~~G~~ 180 (213)
T PF01988_consen 150 LLPYFFLPSVSEAFIASIAVTILALFILGYF 180 (213)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566664 223333334444444444444
No 173
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=25.82 E-value=2.4e+02 Score=22.92 Aligned_cols=69 Identities=7% Similarity=-0.072 Sum_probs=48.1
Q ss_pred HhhcCCCCcccccccccccceechhhHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 023802 181 VETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGK 252 (277)
Q Consensus 181 ~et~~~~~e~~~~~s~mHDFclgipYg~LVa~GGiiGY~kaGSi~SL~aGl~fG~lLl~aGygSLk~~k~gk 252 (277)
.+|.-..+++.+..-..|=..+++.+.++.=+|=+++-+++ ..- ..-.+.+.++..+|+.....+++..
T Consensus 4 ~~tyf~~~~~~~~~l~~Hi~lm~la~~il~Pi~lvL~~~~s--r~~-~~~q~~~~~l~~~g~~~g~~~~~~~ 72 (105)
T PF10348_consen 4 TTTYFTSPSPHRSALYAHIVLMTLAWVILYPIGLVLGNARS--RWH-LPVQTVFLVLMILGLFLGSVYNGST 72 (105)
T ss_pred CcchhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHccc--hHH-HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34544445456778889999999999999999999888874 332 2335666666777777666666543
No 174
>PF11638 DnaA_N: DnaA N-terminal domain; InterPro: IPR024633 The bacterial DnaA protein [, , ] plays an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) []. This entry represents the N-terminal domain of DnaA. This domain is monomeric in solution and has a hydrophobic cleft flanked by several negative residues on one side and positive residues on the other [].; GO: 0005524 ATP binding; PDB: 2JMP_A 2E0G_A.
Probab=25.69 E-value=57 Score=23.17 Aligned_cols=23 Identities=22% Similarity=0.758 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 023802 98 EEAWKQTLAAFREQAIKMQSVSQEAYEIY 126 (277)
Q Consensus 98 ~E~Wkq~L~~fkeqa~kmq~~s~eaY~vy 126 (277)
|+.|.++|+.+|++ ++.++|+.+
T Consensus 1 ~~~W~~vl~~lk~~------l~~~~f~tW 23 (65)
T PF11638_consen 1 EEIWEKVLERLKKE------LSEQSFNTW 23 (65)
T ss_dssp -HHHHHHHHHHHHH------TSS-HHHHT
T ss_pred CcHHHHHHHHHHHH------CCHHHHHHH
Confidence 57899999999954 566667654
No 175
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=25.50 E-value=2e+02 Score=27.95 Aligned_cols=49 Identities=18% Similarity=0.256 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 023802 104 TLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDL 152 (277)
Q Consensus 104 ~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L 152 (277)
.||.+++...+|-.+.-.+=.-=.+....-.++.-++|+.+.+.++..+
T Consensus 56 ~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i 104 (301)
T PF06120_consen 56 SLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQI 104 (301)
T ss_pred hhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443333322222222223333333334444444444444
No 176
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=25.27 E-value=1.6e+02 Score=29.81 Aligned_cols=74 Identities=14% Similarity=0.280 Sum_probs=47.9
Q ss_pred hhhhhcChhhHHHHHHHHHHH---HHHHHHHhhhhhHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhhHHHH
Q 023802 87 SSEIKASAKESEEAWKQTLAA---FREQAIKMQSVSQEAYEIYSKRATAILKET---------AEQLKIEAEKARKDLTV 154 (277)
Q Consensus 87 ~~~~~~~~ees~E~Wkq~L~~---fkeqa~kmq~~s~eaY~vys~ka~~vL~et---------se~L~iqa~ka~~~L~~ 154 (277)
..-.+..++++++.|+++-+. |.++..+|..++++-.+.|.+ ....|..- -.+++.+..+.|+-|..
T Consensus 292 ~~~~~~~p~~s~~i~~~l~~aN~~~~~~l~~l~~~~~~~~~~y~~-~~~~l~~~~~~~~~~~~~~~i~~~i~~~R~~Lr~ 370 (454)
T TIGR01219 292 KKWQMSDPEESRENWQNLSDANLELETKLNDLSKLAKDHWDVYLR-VIKVLTSEKCVLHATEELLEAREAMLRIRRLMRQ 370 (454)
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccchhhh-hhhhhccccchhcccccHHHHHHHHHHHHHHHHH
Confidence 345667789999999999887 777777777666544444433 23333321 34467777777777777
Q ss_pred HHHHhhh
Q 023802 155 VAKELSE 161 (277)
Q Consensus 155 ~ake~~e 161 (277)
+.++.|.
T Consensus 371 ~~~~sgv 377 (454)
T TIGR01219 371 ITEEASV 377 (454)
T ss_pred hhHhcCC
Confidence 7666543
No 177
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=25.05 E-value=80 Score=23.53 Aligned_cols=16 Identities=38% Similarity=0.548 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 023802 228 RFGVILGGTLLALSIA 243 (277)
Q Consensus 228 ~aGl~fG~lLl~aGyg 243 (277)
+.|++++++|.++|+.
T Consensus 16 igGLi~A~vlfi~Gi~ 31 (50)
T PF02038_consen 16 IGGLIFAGVLFILGIL 31 (50)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHH
Confidence 4577777887777774
No 178
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=25.04 E-value=2.1e+02 Score=22.54 Aligned_cols=74 Identities=12% Similarity=0.246 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHhhhhhhhhHhHHhhcCc---
Q 023802 102 KQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEK---ARKDLTVVAKELSEDGKKYLTEATENNP--- 175 (277)
Q Consensus 102 kq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~k---a~~~L~~~ake~~e~gkeyl~~aaensp--- 175 (277)
+++|++.++|..+...++.+ .+.+|.+.-++++.+.+. ....-..++..+.+ -+..-.+++|
T Consensus 3 ~~~L~~L~~eL~~~~~ld~~--------~~~~L~~l~~dIe~~L~~~~~~~~~~~~l~d~l~~----av~~FE~~HP~l~ 70 (85)
T PF14357_consen 3 QELLEKLHQELEQNPPLDEE--------TRAELSSLDDDIEAQLAEEDEAEAEDESLVDRLNE----AVERFEASHPKLA 70 (85)
T ss_pred HHHHHHHHHHHhcCCCCCHH--------HHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHH----HHHHHHHhCCcHH
Confidence 67889999888888777654 344555555555554444 11111112222211 2224456677
Q ss_pred -hhhHHHhhcCCC
Q 023802 176 -EVKEIVETFTLP 187 (277)
Q Consensus 176 -~vK~i~et~~~~ 187 (277)
.+++|+.|+.+-
T Consensus 71 ~~lr~i~~sLa~M 83 (85)
T PF14357_consen 71 GILRNIMDSLANM 83 (85)
T ss_pred HHHHHHHHHHHHC
Confidence 566777666543
No 179
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=24.87 E-value=1.7e+02 Score=22.18 Aligned_cols=39 Identities=13% Similarity=-0.031 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHH---------hhCCCCchhHHHHHHHHHHHHHH
Q 023802 232 ILGGTLLALSIASLRS---------HKKGKTSPVALKGQAGQRVVYFT 270 (277)
Q Consensus 232 ~fG~lLl~aGygSLk~---------~k~gk~s~l~L~~SavLAavm~~ 270 (277)
+.|.+|++-||-+++. .-++.+...+...-.+++.+.++
T Consensus 9 v~GivLl~~G~~~~~S~~s~~s~~~TG~~t~~t~~~ligG~va~ivGl 56 (59)
T PF11381_consen 9 VGGIVLLYFGYQASDSLGSQVSRAFTGSPTDKTIWYLIGGAVAVIVGL 56 (59)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHhcCCCCchhHHHHHhHHHHHHHHH
Confidence 4566666677766544 23334444555555666666554
No 180
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=24.75 E-value=4.5e+02 Score=22.54 Aligned_cols=77 Identities=25% Similarity=0.264 Sum_probs=46.4
Q ss_pred hhcChhhHHHHHHHHHHHHHHHHHHhhhhh-HHH---HHHHHHHHHH----HHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Q 023802 90 IKASAKESEEAWKQTLAAFREQAIKMQSVS-QEA---YEIYSKRATA----ILKETAEQLKIEAEKARKDLTVVAKELSE 161 (277)
Q Consensus 90 ~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s-~ea---Y~vys~ka~~----vL~etse~L~iqa~ka~~~L~~~ake~~e 161 (277)
...+.+..++.-++-|+..|+||..|-.-. .+| .+...++|.. .+..+.+++..+.+++.++|..-+.++..
T Consensus 52 ~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~~a~~~I~~e~~~a~~~l~~~~~~la~ 131 (161)
T COG0711 52 LKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKERALEELRAEVAELAV 131 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556667777777777777764332 223 2333344433 34455667777788888888887777776
Q ss_pred hhhhh
Q 023802 162 DGKKY 166 (277)
Q Consensus 162 ~gkey 166 (277)
.+-|-
T Consensus 132 ~~aek 136 (161)
T COG0711 132 AIAEK 136 (161)
T ss_pred HHHHH
Confidence 55443
No 181
>COG1556 Uncharacterized conserved protein [Function unknown]
Probab=24.63 E-value=83 Score=29.31 Aligned_cols=43 Identities=14% Similarity=0.212 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023802 96 ESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQL 141 (277)
Q Consensus 96 es~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L 141 (277)
..+=.|.+.++.||+++.+|. .+-++.-+...++|+++.-|..
T Consensus 30 ~~~~s~~~~~~~~k~~~~~~~---ae~~~t~~~~l~~vi~e~~~~~ 72 (218)
T COG1556 30 LAKLSTDDLVEEFKHFASDVS---AECIETSKSELEEVIREALEEY 72 (218)
T ss_pred ccccchHHHHHHHHHHHHHhh---hheeeccHhhHHHHHHHHHHhc
Confidence 456679999999999999887 6777777777777777765443
No 182
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=24.46 E-value=2.7e+02 Score=25.67 Aligned_cols=51 Identities=25% Similarity=0.276 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 023802 97 SEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELS 160 (277)
Q Consensus 97 s~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~ 160 (277)
.+|.|+-.. ++..+++....+=.+.|.++ -|+-..++||||+- +-+.|-++
T Consensus 13 ~~~~~~~~~----~~~~~~~~~~~~~~~e~~~~--------~~e~~~kaeeaqK~-Gi~~kIf~ 63 (306)
T PF04888_consen 13 SEESLKSKK----EQIERASEAQEKKAEEKAEE--------IEEAQEKAEEAQKA-GIFSKIFG 63 (306)
T ss_pred hHHHHHHHH----HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhc-ChHHHHHH
Confidence 444444443 33345666555555555555 22233445677765 55444443
No 183
>PRK10711 hypothetical protein; Provisional
Probab=24.29 E-value=2.5e+02 Score=26.29 Aligned_cols=71 Identities=13% Similarity=0.066 Sum_probs=47.4
Q ss_pred chhhHHHHHHhhHHHHHhcCC---hhHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHH-HHHHhh
Q 023802 203 GIPYGLLLTLGGFISFMVTGS---IPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVY-FTIEIT 274 (277)
Q Consensus 203 gipYg~LVa~GGiiGY~kaGS---i~SL~aGl~fG~lLl~aGygSLk~~k~gk~s~l~L~~SavLAavm-~~R~~~ 274 (277)
..|+..++-..+..-|-|.++ .|=+. ..++-.+++.+.=.+|+.|++|.+...++.+=+++|-.+ .||+++
T Consensus 8 ~~~lTl~~y~~~~~l~~k~~~~~l~Pll~-s~~~ii~~L~~~~i~Y~~Y~~g~~~l~~lLgPAtVALAvPLY~q~~ 82 (231)
T PRK10711 8 SLPLTLIVFFAARKLAARFKFPLLNPLLV-AMVVIIPFLLLTGIPYEHYFKGSEVLNDLLQPAVVALAFPLYEQLH 82 (231)
T ss_pred HhHHHHHHHHHHHHHHHHcCCCcccHHHH-HHHHHHHHHHHhCCCHHHHHhccHHHHhhhhHHHHHHHHHHHHhHH
Confidence 456667777788888888877 33333 334444444444467999999998888888777776665 555543
No 184
>PF13315 DUF4085: Protein of unknown function (DUF4085)
Probab=24.28 E-value=4.5e+02 Score=24.42 Aligned_cols=51 Identities=22% Similarity=0.317 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcCc-hhhHHHhhcCC
Q 023802 135 KETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNP-EVKEIVETFTL 186 (277)
Q Consensus 135 ~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaensp-~vK~i~et~~~ 186 (277)
.-.+++|+.++.+=.+|-...-+-+..+=++|....+++=| .|+++- ++.-
T Consensus 75 ~~~s~~l~~~~~ew~~~~~~~~~~~~~~Y~e~~~sI~~~lp~~v~ql~-~~sf 126 (208)
T PF13315_consen 75 DYPSEKLKKAITEWCEDYEKRVKRLCQAYYEYYNSIKEKLPQNVQQLF-NFSF 126 (208)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh-hccc
Confidence 34667777777777777777777777888888888999999 877765 4433
No 185
>PRK14788 lipoprotein signal peptidase; Provisional
Probab=24.22 E-value=1.5e+02 Score=26.96 Aligned_cols=17 Identities=0% Similarity=-0.394 Sum_probs=10.3
Q ss_pred CchhHHHHHHHHHHHHH
Q 023802 253 TSPVALKGQAGQRVVYF 269 (277)
Q Consensus 253 ~s~l~L~~SavLAavm~ 269 (277)
+.+..+..++++++++|
T Consensus 87 ~~~~~ial~LIlGGAiG 103 (200)
T PRK14788 87 SKGLIICISLILAGAIG 103 (200)
T ss_pred cHHHHHHHHHHHHHHhh
Confidence 33444566777777764
No 186
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.17 E-value=72 Score=32.33 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHH
Q 023802 96 ESEEAWKQTLAAFREQAIKMQSVSQE 121 (277)
Q Consensus 96 es~E~Wkq~L~~fkeqa~kmq~~s~e 121 (277)
+-.+.|++.+...-+--.+-..+|++
T Consensus 33 ~ld~~~r~~~~~~e~l~~~rn~~sk~ 58 (429)
T COG0172 33 ELDEERRKLLRELEELQAERNELSKE 58 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666554443332333334443
No 187
>PLN02777 photosystem I P subunit (PSI-P)
Probab=24.15 E-value=34 Score=30.92 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=16.6
Q ss_pred eccccCCCchhhhhhhcChhhHHHHHHHHHHH
Q 023802 76 SASHEESSSEESSEIKASAKESEEAWKQTLAA 107 (277)
Q Consensus 76 a~s~e~s~~~e~~~~~~~~ees~E~Wkq~L~~ 107 (277)
.++.|.+.+.++.+.+.=-...||.|.++=|.
T Consensus 62 ~a~ge~s~~~~~~~~~ei~k~~~e~Wd~~EdK 93 (167)
T PLN02777 62 MATGEAPAEVETTELPEIVKTVQEAWDKVEDK 93 (167)
T ss_pred HhccCCCcccccccHHHHHHHHHHHHhhhcch
Confidence 33444555444444333334578888776443
No 188
>PRK09109 motC flagellar motor protein; Reviewed
Probab=24.08 E-value=5.3e+02 Score=23.79 Aligned_cols=55 Identities=11% Similarity=0.166 Sum_probs=25.9
Q ss_pred hcCc-hhhHHHhhcCCCCccccccccccccee-----chhhHHHHHHhhHHHHHhc-CChhHHH
Q 023802 172 ENNP-EVKEIVETFTLPTEDVKEFSTLRDFYL-----GIPYGLLLTLGGFISFMVT-GSIPAIR 228 (277)
Q Consensus 172 ensp-~vK~i~et~~~~~e~~~~~s~mHDFcl-----gipYg~LVa~GGiiGY~ka-GSi~SL~ 228 (277)
..+| .++|+.|.-.... ..++.+-.+++- ...+|.+=++-|++.-+.+ ++...|.
T Consensus 118 g~~~~~i~~~le~~i~~~--~~r~~~~~~~l~~~a~~AP~lGllGTVlGlI~~f~~l~~p~~lg 179 (246)
T PRK09109 118 GAEPESIRSVLEVEIDTQ--EHRDLQAAKVFESMGGYAPTIGIIGAVMGLIHVMENLADPSQLG 179 (246)
T ss_pred CCCHHHHHHHHHHHHHHH--HHHHHhHhHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3455 7888887722211 111111122222 2245666666666665555 5544443
No 189
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=24.03 E-value=1.5e+02 Score=25.02 Aligned_cols=39 Identities=18% Similarity=0.172 Sum_probs=29.0
Q ss_pred ceechhhHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHH
Q 023802 200 FYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLL 238 (277)
Q Consensus 200 FclgipYg~LVa~GGiiGY~kaGSi~SL~aGl~fG~lLl 238 (277)
+.++|+.|.+++.|...+.+..--+-++-+|....++|+
T Consensus 5 dvl~Iglgv~~~Gg~~Y~~l~~~G~d~~~AGi~sq~~lv 43 (104)
T PF11460_consen 5 DVLLIGLGVFLLGGLLYGGLQAAGLDSLSAGIWSQALLV 43 (104)
T ss_pred ceeeecHHHHHHHHHHHHHHHHcCCCchhhhHHHHHHHH
Confidence 356788888888777777777777788888877776543
No 190
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=23.90 E-value=3e+02 Score=23.49 Aligned_cols=48 Identities=25% Similarity=0.281 Sum_probs=37.1
Q ss_pred cceechhhHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHH
Q 023802 199 DFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLR 246 (277)
Q Consensus 199 DFclgipYg~LVa~GGiiGY~kaGSi~SL~aGl~fG~lLl~aGygSLk 246 (277)
|.=...++....+.|.++|.......+.-..-.++|..+++.++-.+.
T Consensus 62 ~~~~~~~~~~~~~~g~~iG~~l~~~l~~~~l~~~~~~~ll~~~~~~~~ 109 (240)
T PF01925_consen 62 DWKIVLPLIIGALIGVVIGAWLLSLLPDDILKLIFGLFLLLLAIYMLL 109 (240)
T ss_pred chhhhhhhhhHhHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHh
Confidence 555677888888889999988888777767788888887777765544
No 191
>PF13664 DUF4149: Domain of unknown function (DUF4149)
Probab=23.90 E-value=3.3e+02 Score=20.71 Aligned_cols=21 Identities=10% Similarity=0.107 Sum_probs=13.9
Q ss_pred eechhhHHHHHHhhHHHHHhc
Q 023802 201 YLGIPYGLLLTLGGFISFMVT 221 (277)
Q Consensus 201 clgipYg~LVa~GGiiGY~ka 221 (277)
|+++-.|+.+..+-+++.+.-
T Consensus 2 ~~~~w~G~~~~~~fvvap~lF 22 (101)
T PF13664_consen 2 LLALWLGSMVFFTFVVAPVLF 22 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777766666543
No 192
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=23.84 E-value=79 Score=28.22 Aligned_cols=30 Identities=13% Similarity=0.107 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhhCCCCch
Q 023802 226 AIRFGVILGGTLLALS-IASLRSHKKGKTSP 255 (277)
Q Consensus 226 SL~aGl~fG~lLl~aG-ygSLk~~k~gk~s~ 255 (277)
.+|+|++.+.+..++| +.||-.|++.|.|+
T Consensus 115 g~IaGIvsav~valvGAvsSyiaYqkKKlCF 145 (169)
T PF12301_consen 115 GTIAGIVSAVVVALVGAVSSYIAYQKKKLCF 145 (169)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhccce
Confidence 3445555444433333 35666777777775
No 193
>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies. Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane
Probab=23.62 E-value=74 Score=27.13 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=20.1
Q ss_pred HHHHHHhhHHHHHHHHhhhhhhhhH
Q 023802 143 IEAEKARKDLTVVAKELSEDGKKYL 167 (277)
Q Consensus 143 iqa~ka~~~L~~~ake~~e~gkeyl 167 (277)
.|.|-||..+...|..++++.|||=
T Consensus 91 ~q~d~Ak~ri~d~a~~v~~kake~g 115 (118)
T PF01277_consen 91 DQLDYAKRRIADTASYVGQKAKEVG 115 (118)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4668888888888888888888873
No 194
>PF09677 TrbI_Ftype: Type-F conjugative transfer system protein (TrbI_Ftype); InterPro: IPR014115 This entry represents TrbI, an essential component of the F-type conjugative transfer system for plasmid DNA transfer that has been shown to be localized to the periplasm [, ].
Probab=23.50 E-value=2.3e+02 Score=23.56 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 023802 101 WKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKET 137 (277)
Q Consensus 101 Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~et 137 (277)
=|+++++|.+|..+ .+++.|..+...++=+.-|.++
T Consensus 38 l~~tv~~f~~~~a~-~~lt~~q~~a~t~~F~~aL~~~ 73 (111)
T PF09677_consen 38 LKGTVDEFVQQLAR-SSLTPEQVEALTQRFMQALEAS 73 (111)
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHH
Confidence 37899999988776 7788888888888866666655
No 195
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=23.33 E-value=2.7e+02 Score=27.78 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHH
Q 023802 96 ESEEAWKQTLAAFREQA 112 (277)
Q Consensus 96 es~E~Wkq~L~~fkeqa 112 (277)
.+.+....+|+++.+.+
T Consensus 95 ~~~~~~~~~l~~~~~~~ 111 (525)
T TIGR02231 95 DALKALAKFLEDIREGL 111 (525)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 46666777777776543
No 196
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=23.27 E-value=5.5e+02 Score=27.62 Aligned_cols=60 Identities=15% Similarity=0.220 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Q 023802 102 KQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSE 161 (277)
Q Consensus 102 kq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e 161 (277)
++-++..++++.+.+.-=.+.++...++-..++.++.++.+...++|+++...+-+++-+
T Consensus 531 ~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 531 NEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555666666555666666667777777777777777777777777666666654
No 197
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=23.15 E-value=5.7e+02 Score=24.79 Aligned_cols=41 Identities=27% Similarity=0.395 Sum_probs=32.1
Q ss_pred hhhcChhhHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHH
Q 023802 89 EIKASAKESEEAWKQTLAAFREQAIKMQSV--SQEAYEIYSKR 129 (277)
Q Consensus 89 ~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~--s~eaY~vys~k 129 (277)
-++++-|..---|+.|=..++.++.||-=. -.--|+||-+|
T Consensus 77 g~Kigled~~t~~r~~eakvraei~~mkVt~kvn~h~kI~g~r 119 (265)
T PF06409_consen 77 GIKIGLEDLFTLWRHMEAKVRAEIRKMKVTTKVNSHYKINGKR 119 (265)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHH
Confidence 467777888889999999999999877543 23468999865
No 198
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.09 E-value=88 Score=29.01 Aligned_cols=24 Identities=42% Similarity=0.555 Sum_probs=19.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 023802 107 AFREQAIKMQSVSQEAYEIYSKRATAI 133 (277)
Q Consensus 107 ~fkeqa~kmq~~s~eaY~vys~ka~~v 133 (277)
.+.|||.||- -|-||.|+.||+-.
T Consensus 127 ALNEeAGkmL---LEnYdeYa~rARl~ 150 (223)
T KOG0423|consen 127 ALNEEAGKML---LENYDEYARRARLY 150 (223)
T ss_pred HHhHHHHHHH---HHhHHHHHHHHHHH
Confidence 4668999985 68999999998753
No 199
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=23.08 E-value=3.7e+02 Score=21.03 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHhhHHH
Q 023802 134 LKETAEQLKIEAEKARKDLT 153 (277)
Q Consensus 134 L~etse~L~iqa~ka~~~L~ 153 (277)
+.++.++++...++++.++.
T Consensus 86 ~~ea~~~~~~~~~~a~~~i~ 105 (132)
T PF00430_consen 86 LAEAEKEAERIIEQAEAEIE 105 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 200
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=22.76 E-value=4.7e+02 Score=27.19 Aligned_cols=89 Identities=15% Similarity=0.123 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHH---------------HHHHHHHHHHHHHHHHH----HHHHhhHHHHHHHH
Q 023802 98 EEAWKQTLAAFREQAIKMQSVSQEAYEIYS---------------KRATAILKETAEQLKIE----AEKARKDLTVVAKE 158 (277)
Q Consensus 98 ~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys---------------~ka~~vL~etse~L~iq----a~ka~~~L~~~ake 158 (277)
++-.++++..+|+.+..+.++...+.-.|. +.+..+|.+..++|... .|..+.-+..++++
T Consensus 390 ~~~l~~~~~l~~~r~~~l~d~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~e~~~~~~~~~~~~ 469 (513)
T PRK14895 390 IGYIKQAMPSLLVRSETLLELTRLAQIYLVDSPIIYSQDSKEIIENCDKNLIKQIIENLSELEQFDKESVQNKFKEIAAA 469 (513)
T ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHhCCCCccchHHHHHhhhhhHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 345588888999888888877777643331 22345667766777552 45566777888888
Q ss_pred hhhhhhhhHhH---H---hhcCchhhHHHhhcCC
Q 023802 159 LSEDGKKYLTE---A---TENNPEVKEIVETFTL 186 (277)
Q Consensus 159 ~~e~gkeyl~~---a---aensp~vK~i~et~~~ 186 (277)
.|-++++...- | ...+|++-|+.+-++-
T Consensus 470 ~g~k~~~l~~plR~AltG~~~gP~l~~~~~lLGk 503 (513)
T PRK14895 470 NDLKLNDIMKPVRALITGMTASPSVFEIAEILGK 503 (513)
T ss_pred hCCCHHHhHHHHHHHHcCCCCCCCHHHHHHHhCH
Confidence 88888885432 2 3677888888887765
No 201
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=22.71 E-value=1.7e+02 Score=20.74 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=17.3
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHhhCCCC
Q 023802 226 AIRFGVILGGT---LLALSIASLRSHKKGKT 253 (277)
Q Consensus 226 SL~aGl~fG~l---Ll~aGygSLk~~k~gk~ 253 (277)
.|.+|+++|.+ +..+.+.||.-+++|+.
T Consensus 4 plL~GiVlGli~vtl~Glfv~Ay~QY~Rg~q 34 (37)
T PF02529_consen 4 PLLSGIVLGLIPVTLAGLFVAAYLQYRRGNQ 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCS--T
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHhcccc
Confidence 35667766654 34456788888988864
No 202
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=22.33 E-value=1.7e+02 Score=27.85 Aligned_cols=44 Identities=34% Similarity=0.473 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHhhhhhhh
Q 023802 122 AYEIYSKRATAILKETAEQL----KIEAEKARKDLTVVAKELSEDGKK 165 (277)
Q Consensus 122 aY~vys~ka~~vL~etse~L----~iqa~ka~~~L~~~ake~~e~gke 165 (277)
-|.--|+|+...|+|--+.+ ..+.|+||+.+-.+++++.++|+=
T Consensus 282 il~nmS~R~a~~l~eel~~~g~v~~~dve~Aq~~I~~~~r~l~~~G~I 329 (339)
T PRK05686 282 FLSNMSKRAAEMLREDLEALGPVRLSDVEEAQKKIVQIARRLAEAGEI 329 (339)
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 45667999999999987765 568999999999999999999973
No 203
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=22.32 E-value=3.9e+02 Score=25.26 Aligned_cols=37 Identities=22% Similarity=0.400 Sum_probs=22.1
Q ss_pred HhhHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 023802 212 LGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGK 252 (277)
Q Consensus 212 ~GGiiGY~kaGSi~SL~aGl~fG~lLl~aGygSLk~~k~gk 252 (277)
+||++-|...|.. +|..+|++-...||..+.-.++|.
T Consensus 184 ~~~~~~~~~~~~~----~gGaSGvVygL~g~~~~~~~~~p~ 220 (276)
T PRK10907 184 LSGWVQSKFSGPW----FGGLSGVVYALMGYVWLRGERDPQ 220 (276)
T ss_pred HHHHHHHHHccch----hhHHHHHHHHHHHHHHHHhccccc
Confidence 4455556666643 566667766666776665555553
No 204
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=22.25 E-value=4.4e+02 Score=21.61 Aligned_cols=65 Identities=18% Similarity=0.278 Sum_probs=31.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 023802 93 SAKESEEAWKQTLAAFREQAIKMQSVS-QEAYEIY-------SKRATAILKETAEQLKIEAEKARKDLTVVAK 157 (277)
Q Consensus 93 ~~ees~E~Wkq~L~~fkeqa~kmq~~s-~eaY~vy-------s~ka~~vL~etse~L~iqa~ka~~~L~~~ak 157 (277)
+.++..+.-++-|...+.++..+-.-. .+|-.++ .+.+..+..++-+++..+.++++.+|..-+-
T Consensus 53 ~a~~~~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l~~~~~ 125 (156)
T PRK05759 53 ELELAQAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQERKRAREELRKQVA 125 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555665555543322 2222222 2334445555555666666666655544333
No 205
>PRK02935 hypothetical protein; Provisional
Probab=22.24 E-value=2.8e+02 Score=23.76 Aligned_cols=51 Identities=16% Similarity=0.290 Sum_probs=28.2
Q ss_pred cccccccccceechhhHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Q 023802 191 VKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIA 243 (277)
Q Consensus 191 ~~~~s~mHDFclgipYg~LVa~GGiiGY~kaGSi~SL~aGl~fG~lLl~aGyg 243 (277)
.+|+-+++-|-+.+.+.+++.- .+|.+.+.|..=....+++|.+.+.++..
T Consensus 6 ssKINkiRt~aL~lvfiG~~vM--y~Giff~~~~~~m~ifm~~G~l~~l~S~v 56 (110)
T PRK02935 6 SNKINKIRTFALSLVFIGFIVM--YLGIFFRESIIIMTIFMLLGFLAVIASTV 56 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH--HHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 3455566665554444332221 13455677776666677778776665544
No 206
>PRK09713 focB putative formate transporter; Provisional
Probab=22.24 E-value=87 Score=29.69 Aligned_cols=54 Identities=13% Similarity=0.229 Sum_probs=37.3
Q ss_pred cccccccccccceechhhHHHHHHhhHHHHHhcCC------hhHHHHHHHHHHHHHHHHH
Q 023802 189 EDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGS------IPAIRFGVILGGTLLALSI 242 (277)
Q Consensus 189 e~~~~~s~mHDFclgipYg~LVa~GGiiGY~kaGS------i~SL~aGl~fG~lLl~aGy 242 (277)
++-.+.+...-|+.++.=|+++++|+++-...... ...+++|++|+..|+..-+
T Consensus 24 ~~k~~~~~~~~~~~~i~AG~~I~~g~~~~~~v~~~~~~~~g~~~ll~g~~F~vGLilIv~ 83 (282)
T PRK09713 24 AHKIARSKVSVFLMAMSAGVFMAIGFTFYLSVIADAPSSQALTHLVGGLCFTLGFILLAV 83 (282)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHHHH
Confidence 33444566678888998888888888766555422 3668888888877665543
No 207
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=22.07 E-value=6e+02 Score=23.02 Aligned_cols=65 Identities=17% Similarity=0.191 Sum_probs=34.4
Q ss_pred hhhhcChhhHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhHH
Q 023802 88 SEIKASAKESEEAWKQTLAAFREQAIKMQSVSQ-EAYEIY-------SKRATAILKETAEQLKIEAEKARKDL 152 (277)
Q Consensus 88 ~~~~~~~ees~E~Wkq~L~~fkeqa~kmq~~s~-eaY~vy-------s~ka~~vL~etse~L~iqa~ka~~~L 152 (277)
++...+.++..+.+++.|...+.++..|-.-.+ +|-... -+.|..++.++-++++.+.+++..+|
T Consensus 49 e~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~l 121 (246)
T TIGR03321 49 DTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSDEL 121 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556666777777777777666544222 222221 22344455555556666666665544
No 208
>PF05433 Rick_17kDa_Anti: Glycine zipper 2TM domain; InterPro: IPR008816 This domain includes a putative two transmembrane alpha-helical region that contains glycine zipper motifs []. The domain is found in several Rickettsia genus specific 17 kDa surface antigen proteins [].; GO: 0019867 outer membrane
Probab=22.07 E-value=1.6e+02 Score=20.68 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=15.0
Q ss_pred HHhhHHHHHh---cCChhHHHHHHHHHHH
Q 023802 211 TLGGFISFMV---TGSIPAIRFGVILGGT 236 (277)
Q Consensus 211 a~GGiiGY~k---aGSi~SL~aGl~fG~l 236 (277)
+.|+++|... .+.+.+.+.|.+.|++
T Consensus 8 ~~Ga~~G~~ig~~~g~~~g~~~Ga~~Ga~ 36 (42)
T PF05433_consen 8 AVGAVAGSQIGGGNGRTLGAVAGAVAGAL 36 (42)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Confidence 3566666666 3455555555555555
No 209
>PHA02047 phage lambda Rz1-like protein
Probab=21.94 E-value=3.6e+02 Score=22.77 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcCc-hhhHHHhh
Q 023802 127 SKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNP-EVKEIVET 183 (277)
Q Consensus 127 s~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaensp-~vK~i~et 183 (277)
|-|+..+-.++.|+|..|.|.++..+..+=+.|-. |..-+|-.- +||...|.
T Consensus 25 ~~r~~g~~h~~a~~la~qLE~a~~r~~~~Q~~V~~-----l~~kae~~t~Ei~~aL~~ 77 (101)
T PHA02047 25 SYRALGIAHEEAKRQTARLEALEVRYATLQRHVQA-----VEARTNTQRQEVDRALDQ 77 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHh
Confidence 34677777889999999999999988887666543 222244444 66666664
No 210
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.85 E-value=3.9e+02 Score=24.61 Aligned_cols=51 Identities=16% Similarity=0.057 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023802 96 ESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAE 146 (277)
Q Consensus 96 es~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ 146 (277)
-+-..|+++.+.+++.-.++.--..+.|+-+.++-..-|++..++++.+..
T Consensus 121 ldp~~~~~~a~~Ia~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~l~ 171 (287)
T cd01137 121 MSPKNAIIYVKNIAKALSEADPANAETYQKNAAAYKAKLKALDEWAKAKFA 171 (287)
T ss_pred cCHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678999999998888888888888888877766666666665555544
No 211
>PF05119 Terminase_4: Phage terminase, small subunit; InterPro: IPR006448 This entry is represented by Streptococcus phage 7201, Orf21. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group of sequences describe the distinct family of phage (and integrated prophage) putative terminase small subunit sequnces. Members tend to be encoded by the gene adjacent to the phage terminase large subunit gene.
Probab=21.63 E-value=3.6e+02 Score=20.33 Aligned_cols=44 Identities=20% Similarity=0.406 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023802 97 SEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLK 142 (277)
Q Consensus 97 s~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~ 142 (277)
+.+.||.+...+++- .-+..+....-+.|.. +....+++.++|+
T Consensus 1 Ak~~w~~i~~~L~~~-~~l~~~D~~~l~~yc~-~~~~~~~~~~~l~ 44 (100)
T PF05119_consen 1 AKKEWKRIVPELKEL-GILSNLDVPLLERYCE-AYSRYREAEKELK 44 (100)
T ss_pred ChHHHHHHHHHHHHc-CCCcHhHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 457899999998853 3355555555555553 3344444544444
No 212
>PF15556 Zwint: ZW10 interactor
Probab=21.51 E-value=4.9e+02 Score=24.88 Aligned_cols=42 Identities=14% Similarity=0.305 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Q 023802 120 QEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSE 161 (277)
Q Consensus 120 ~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e 161 (277)
+.-|-.--+|-..-|-+.|-.+|..--.++.+|..+-.|++.
T Consensus 125 QkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~ 166 (252)
T PF15556_consen 125 QKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGT 166 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555656667777777777777888888777777764
No 213
>PRK06937 type III secretion system protein; Reviewed
Probab=21.45 E-value=5.6e+02 Score=22.47 Aligned_cols=60 Identities=20% Similarity=0.211 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Q 023802 102 KQTLAAFREQAIKMQSVSQEAYEIYSKRAT------------AILKETAEQLKIEAEKARKDLTVVAKELSE 161 (277)
Q Consensus 102 kq~L~~fkeqa~kmq~~s~eaY~vys~ka~------------~vL~etse~L~iqa~ka~~~L~~~ake~~e 161 (277)
.++|+.-|++|.+|..-.++.|+---++.- +-+.++..+.....+..+++|..++-.+.+
T Consensus 33 ~~il~~A~~~A~~i~~~A~~~~e~~~~~Gy~~G~~~a~~e~~e~l~~~~~~~~~~~~~~e~~l~~Lvl~ia~ 104 (204)
T PRK06937 33 EELVEAARQRAEEIEAEAQEVYEQQKQLGYQAGLDEARTEQAELILETVLQCQEFYRGVEQQMSEVVLEAVR 104 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777776666666654322211 223333333444445566667666666554
No 214
>TIGR03745 conj_TIGR03745 integrating conjugative element membrane protein, PFL_4702 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=21.33 E-value=1.8e+02 Score=24.61 Aligned_cols=24 Identities=8% Similarity=0.098 Sum_probs=16.0
Q ss_pred HHHHHHHHhhCCCCchhHHHHHHH
Q 023802 240 LSIASLRSHKKGKTSPVALKGQAG 263 (277)
Q Consensus 240 aGygSLk~~k~gk~s~l~L~~Sav 263 (277)
..+..|..+++||..|--+..-.+
T Consensus 61 ~a~~ty~Ei~~Gk~~W~~fg~~v~ 84 (104)
T TIGR03745 61 HALGTYHEIRTGKATWGDFGATVV 84 (104)
T ss_pred HHHHHHHHHHcchhhHHhCcchhh
Confidence 456677888889988755544333
No 215
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=21.21 E-value=1e+02 Score=24.81 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHhhHHHH
Q 023802 135 KETAEQLKIEAEKARKDLTV 154 (277)
Q Consensus 135 ~etse~L~iqa~ka~~~L~~ 154 (277)
.|+.+.|+.|.+.||+||..
T Consensus 67 peA~~eL~~eI~eAK~dLr~ 86 (91)
T PF08285_consen 67 PEAAKELQKEIKEAKADLRK 86 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999964
No 216
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=20.94 E-value=3.6e+02 Score=20.91 Aligned_cols=69 Identities=17% Similarity=0.027 Sum_probs=35.4
Q ss_pred ccceechhhHHHHHHhhHHHHHhc-CChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHH
Q 023802 198 RDFYLGIPYGLLLTLGGFISFMVT-GSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVV 267 (277)
Q Consensus 198 HDFclgipYg~LVa~GGiiGY~ka-GSi~SL~aGl~fG~lLl~aGygSLk~~k~gk~s~l~L~~SavLAav 267 (277)
|++...+..|.+....+...|+.+ .-.++ ..-++.+..-+.....+-..+|..-+...++..-.+++++
T Consensus 32 ~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv 101 (113)
T PF13536_consen 32 KPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGV 101 (113)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 444444444555544555555554 22223 3336666666666667777777655544444433333333
No 217
>PF12699 phiKZ_IP: phiKZ-like phage internal head proteins; InterPro: IPR024413 Phage internal head proteins (IP) are proteins that are encoded by a bacteriophage and assembled into the mature virion inside the capsid head. The most analogous characterised IP proteins are those of bacteriophage T4, which are known to be proteolytically processed during phage maturation, and then subsequently injected into the host cell during infection. The phiKZ_IP family consists of internal head proteins encoded by phiKZ-like phages. Each phage encodes three to six members of this family []. Members of the family reside in the head [] and are cleaved during phage maturation to separate an N-terminal propeptide from a C-terminal domain. The C-terminal domain remains in the mature capsid. The N-terminal propeptide domain is either mostly or completely removed from the mature capsid. In one case, an unrelated polypeptide is embedded in the propeptide and also remains in the mature capsid. The phiKZ-like IP proteins are not discernibly homologous to the T4 IP proteins, and it is not known if the phiKZ-like IP proteins are injected into the host cell, or have some other function within the head.
Probab=20.90 E-value=4.5e+02 Score=25.26 Aligned_cols=32 Identities=13% Similarity=0.017 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHH----HhhhhhHHHHHHHHH
Q 023802 97 SEEAWKQTLAAFREQAI----KMQSVSQEAYEIYSK 128 (277)
Q Consensus 97 s~E~Wkq~L~~fkeqa~----kmq~~s~eaY~vys~ 128 (277)
+.|+||..+....+.+. |++..=++.|..+..
T Consensus 51 s~Edlk~~~k~~~~k~~e~i~kl~~~l~~~~~~~~~ 86 (339)
T PF12699_consen 51 SLEDLKERAKEAGKKIKEFIKKLIADLKDYAVKFMS 86 (339)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55555555544444333 555555555555443
No 218
>PRK05715 NADH:ubiquinone oxidoreductase subunit K; Validated
Probab=20.40 E-value=3.9e+02 Score=20.87 Aligned_cols=27 Identities=7% Similarity=0.203 Sum_probs=20.9
Q ss_pred hHHHHHHhhHHHHHhcCChhHHHHHHH
Q 023802 206 YGLLLTLGGFISFMVTGSIPAIRFGVI 232 (277)
Q Consensus 206 Yg~LVa~GGiiGY~kaGSi~SL~aGl~ 232 (277)
-++++..-|+.|++.+.+......|+=
T Consensus 10 ~~~~lf~iGl~~~~~~~~li~~Ll~lE 36 (100)
T PRK05715 10 LAAILFCIGLVGLLLRRNAIVVLMSIE 36 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666779999999888888877754
No 219
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=20.32 E-value=1.1e+02 Score=30.48 Aligned_cols=24 Identities=42% Similarity=0.451 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHH
Q 023802 131 TAILKETAEQLKIEAEKARKDLTV 154 (277)
Q Consensus 131 ~~vL~etse~L~iqa~ka~~~L~~ 154 (277)
++.|++.+||||.|.+++|+.+..
T Consensus 4 ~~~l~~Eae~L~~qi~~~r~~~~D 27 (343)
T KOG0286|consen 4 LEQLRQEAEQLKNQIRDARKKLND 27 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 577899999999999999987654
No 220
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=20.13 E-value=5.2e+02 Score=23.92 Aligned_cols=62 Identities=18% Similarity=0.238 Sum_probs=42.5
Q ss_pred hhhhcChhhHHHHHHHHHHHHHHH-HHHhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023802 88 SEIKASAKESEEAWKQTLAAFREQ-AIKMQSVSQ--EAYEIYSKRATAILKETAEQLKIEAEKAR 149 (277)
Q Consensus 88 ~~~~~~~ees~E~Wkq~L~~fkeq-a~kmq~~s~--eaY~vys~ka~~vL~etse~L~iqa~ka~ 149 (277)
++-+.+=|++.|.|-.-+-.|.+. +.-++.+.. +|--.|-++|.++|.+...+|+.+.+.+.
T Consensus 168 e~ae~k~e~~~e~~~~~M~~~l~~E~e~~~~l~~lv~aQl~YH~~a~e~L~~l~~~l~~~~~~~~ 232 (244)
T cd07595 168 EEAELKLEQCRDALATDMYEFLAKEAEIASYLIDLIEAQREYHRTALSVLEAVLPELQEQIEQSP 232 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444556777776666666655 444444443 67888999999999999888887776654
No 221
>PF03480 SBP_bac_7: Bacterial extracellular solute-binding protein, family 7; InterPro: IPR018389 This family of proteins are involved in binding extracellular solutes for transport across the bacterial cytoplasmic membrane. This family includes a C4-dicarboxylate-binding protein DctP [, ] and the sialic acid-binding protein SiaP. The structure of the SiaP receptor has revealed an overall topology similar to ATP binding cassette ESR (extracytoplasmic solute receptors) proteins []. Upon binding of sialic acid, SiaP undergoes domain closure about a hinge region and kinking of an alpha-helix hinge component [].; GO: 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 2HZK_C 2HZL_B 2HPG_C 2XWI_A 2XWK_A 2WX9_A 2CEY_A 2WYP_A 3B50_A 2CEX_B ....
Probab=20.11 E-value=1.8e+02 Score=26.05 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHhhhhhhhh
Q 023802 118 VSQEAYEIYSKRATAILKETAEQLK-IEAEKARKDLTVVAKELSEDGKKY 166 (277)
Q Consensus 118 ~s~eaY~vys~ka~~vL~etse~L~-iqa~ka~~~L~~~ake~~e~gkey 166 (277)
+++++|+--++.-+.+|.++.+... ...+..++.....-+.+.+.|-+.
T Consensus 211 ~n~~~w~~L~~e~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v 260 (286)
T PF03480_consen 211 MNKDWWDSLPDEDQEALDDAADEAEARAREYYEAEDEEALKELEENGVTV 260 (286)
T ss_dssp EEHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EE
T ss_pred EcHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCEE
Confidence 4667777777777777777766553 333444444555555555566554
Done!