Query 023802
Match_columns 277
No_of_seqs 112 out of 147
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 13:02:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023802.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023802hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2loo_A Transmembrane protein 1 99.4 2.6E-17 8.9E-22 132.7 0.0 76 196-274 7-82 (108)
2 2los_A Transmembrane protein 1 99.4 3.7E-17 1.3E-21 134.3 0.0 77 195-274 15-91 (121)
3 3p5n_A RIBU, riboflavin uptake 58.3 58 0.002 27.1 8.9 56 197-255 53-110 (189)
4 3mxz_A Tubulin-specific chaper 47.6 83 0.0028 25.3 7.8 58 102-161 28-88 (116)
5 3fym_A Putative uncharacterize 47.5 9.9 0.00034 29.6 2.3 67 151-218 53-124 (130)
6 1nhl_A Synaptosomal-associated 42.6 77 0.0026 21.8 6.1 34 94-127 9-42 (54)
7 3sja_C Golgi to ER traffic pro 40.4 49 0.0017 24.7 5.0 48 104-162 11-58 (65)
8 1j1j_A Translin; testis/brain 39.3 1.1E+02 0.0038 26.7 8.0 16 145-160 77-92 (240)
9 3axj_A GM27569P, translin; tra 35.9 2.2E+02 0.0075 25.1 9.4 37 124-160 49-95 (249)
10 1a87_A Colicin N; bacteriocin, 35.5 2.9E+02 0.01 26.1 10.9 85 102-187 124-219 (321)
11 2l2t_A Receptor tyrosine-prote 33.3 53 0.0018 22.6 3.9 23 222-244 7-29 (44)
12 3ghg_A Fibrinogen alpha chain; 32.3 89 0.003 31.5 6.8 71 95-174 56-129 (562)
13 2ks1_B Epidermal growth factor 32.1 23 0.00079 24.4 1.9 27 222-248 8-34 (44)
14 4dah_A Sporulation kinase D; a 31.8 1.2E+02 0.0039 23.8 6.3 57 120-176 8-69 (217)
15 3j1z_P YIIP, cation efflux fam 31.7 66 0.0023 28.4 5.4 52 202-253 17-70 (306)
16 4i0x_B ESAT-6-like protein MAB 30.7 1.6E+02 0.0055 21.6 7.7 61 99-167 28-91 (103)
17 3kcu_A Probable formate transp 29.4 40 0.0014 30.4 3.6 64 178-241 13-83 (285)
18 3pkr_A FLIG, flagellar motor s 28.2 59 0.002 29.4 4.5 53 114-166 210-270 (279)
19 2k9y_A Ephrin type-A receptor 26.1 64 0.0022 20.6 3.2 19 221-239 9-27 (41)
20 3fse_A Two-domain protein cont 25.6 1.8E+02 0.0061 27.0 7.3 27 103-130 210-236 (365)
21 1n7s_C SNAP-25A; neuronal snar 24.9 2.1E+02 0.0072 21.1 6.5 22 96-117 34-55 (79)
22 2j69_A Bacterial dynamin-like 24.8 3.4E+02 0.012 26.7 9.5 15 230-244 569-583 (695)
23 3kly_A Putative formate transp 24.1 45 0.0015 30.0 2.9 68 178-245 12-86 (280)
24 3sjb_C Golgi to ER traffic pro 23.5 1.1E+02 0.0038 24.1 4.7 38 113-161 37-74 (93)
25 2e0g_A Chromosomal replication 23.5 15 0.00053 27.6 -0.3 26 98-129 2-27 (107)
26 1got_G GT-gamma; complex (GTP- 23.0 56 0.0019 24.4 2.8 41 133-177 21-61 (73)
27 3rko_K NADH-quinone oxidoreduc 23.0 2.4E+02 0.0083 21.1 6.8 29 204-232 8-36 (100)
28 2xwv_A Sialic acid-binding per 22.1 1.9E+02 0.0064 25.2 6.4 30 146-175 277-306 (312)
29 1gl2_C VTI1B, vesicle transpor 21.7 2.2E+02 0.0075 20.1 6.4 35 93-127 17-51 (65)
30 1qsd_A Protein (beta-tubulin b 21.6 2.9E+02 0.01 21.6 7.4 54 101-156 23-80 (106)
31 4fhr_B Flagellar motor switch 21.1 94 0.0032 26.9 4.2 42 123-164 166-211 (216)
32 3hjl_A Flagellar motor switch 21.0 88 0.003 28.8 4.2 43 122-164 278-324 (329)
33 2oar_A Large-conductance mecha 20.9 84 0.0029 27.2 3.8 28 211-238 24-51 (174)
34 3evf_A RNA-directed RNA polyme 20.8 1.1E+02 0.0037 27.9 4.8 51 95-147 7-69 (277)
35 2zxe_G FXYD10, phospholemman-l 20.6 65 0.0022 24.7 2.7 18 228-245 21-38 (74)
36 1z72_A Transcriptional regulat 20.2 3.3E+02 0.011 22.3 7.3 75 96-171 23-103 (225)
37 3v5w_G G gamma-I, guanine nucl 20.1 60 0.0021 24.8 2.5 43 134-180 18-60 (77)
38 2jp3_A FXYD domain-containing 20.0 79 0.0027 23.8 3.0 18 228-245 19-36 (67)
No 1
>2loo_A Transmembrane protein 14A; helical bundle; NMR {Homo sapiens} PDB: 2lop_A
Probab=99.43 E-value=2.6e-17 Score=132.74 Aligned_cols=76 Identities=16% Similarity=0.221 Sum_probs=70.3
Q ss_pred ccccceechhhHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHhh
Q 023802 196 TLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEIT 274 (277)
Q Consensus 196 ~mHDFclgipYg~LVa~GGiiGY~kaGSi~SL~aGl~fG~lLl~aGygSLk~~k~gk~s~l~L~~SavLAavm~~R~~~ 274 (277)
++-.+|++||||+++++||++||+|+||++||++|+++|++ +++++|+.|++++...+.+..+++++.+|+.|.++
T Consensus 7 ~~~~~~~~~~yg~Ll~~GGi~GY~k~gS~~SL~aG~~~G~l---l~~~~~~~~~~~~~~~l~l~~S~~L~~~m~~R~~~ 82 (108)
T 2loo_A 7 KVGMDLIGFGYAALVTFGSIFGYKRRGGVPSLIAGLFVGCL---AGYGAYRVSNDKRDVKVSLFTAFFLATIMGVRFKR 82 (108)
Confidence 34568999999999999999999999999999999999998 69999999999988888899999999999999875
No 2
>2los_A Transmembrane protein 14C; paramagnetic relaxation enhancement, helic; NMR {Homo sapiens}
Probab=99.41 E-value=3.7e-17 Score=134.35 Aligned_cols=77 Identities=18% Similarity=0.322 Sum_probs=71.1
Q ss_pred cccccceechhhHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHhh
Q 023802 195 STLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEIT 274 (277)
Q Consensus 195 s~mHDFclgipYg~LVa~GGiiGY~kaGSi~SL~aGl~fG~lLl~aGygSLk~~k~gk~s~l~L~~SavLAavm~~R~~~ 274 (277)
..|-=+|++|+||+++++||++||+|+||++||++|+++|++ +++++|+.|++++++++.+..+++++.+|+.|.++
T Consensus 15 ~~m~~~~~~~~yg~Ll~~GGiiGY~k~gS~~SLiaGl~~G~l---~~~~a~~~~~~~~~~~l~l~~S~~L~~~mg~R~~~ 91 (121)
T 2los_A 15 SVVPLHWFGFGYAALVASGGIIGYVKAGSVPSLAAGLLFGSL---AGLGAYQLSQDPRNVWVFLATSGTLAGIMGMRFYH 91 (121)
Confidence 345559999999999999999999999999999999999998 78999999999998889999999999999999874
No 3
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=58.30 E-value=58 Score=27.05 Aligned_cols=56 Identities=11% Similarity=0.268 Sum_probs=31.5
Q ss_pred cccceechhhHHHHH-HhhHHHHHhcCC-hhHHHHHHHHHHHHHHHHHHHHHHhhCCCCch
Q 023802 197 LRDFYLGIPYGLLLT-LGGFISFMVTGS-IPAIRFGVILGGTLLALSIASLRSHKKGKTSP 255 (277)
Q Consensus 197 mHDFclgipYg~LVa-~GGiiGY~kaGS-i~SL~aGl~fG~lLl~aGygSLk~~k~gk~s~ 255 (277)
+=-+.+|..+|++++ ++++++++.+|. .+...+..+.+++ .|+.+.-.+|+.++.+
T Consensus 53 l~~~~~Gp~~g~~~~~l~~ll~~l~~g~~~~g~~~~~l~~~~---~g~~~~~~y~k~~~~~ 110 (189)
T 3p5n_A 53 LATFTFGPVAGIIVALVKNLLNYLFSMGDPVGPFANFLAGAS---FLLTAYAIYKNKRSTK 110 (189)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHH---HHHHHHHHHSSSCSHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHH---HHHHHHHHHHhcccHH
Confidence 334678888888775 577888888764 2333333333333 2233334567766543
No 4
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=47.58 E-value=83 Score=25.27 Aligned_cols=58 Identities=21% Similarity=0.306 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHhhh
Q 023802 102 KQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAE---QLKIEAEKARKDLTVVAKELSE 161 (277)
Q Consensus 102 kq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse---~L~iqa~ka~~~L~~~ake~~e 161 (277)
++=+++.++...||.+=....|++ ||.+.||.||.- .++....+|-.+|..+-.+..+
T Consensus 28 ~kE~~~q~~kiekmk~e~~dey~i--Kkq~evL~Et~~mipd~~~RL~~a~~~L~~~l~~~~~ 88 (116)
T 3mxz_A 28 EKEVEREAAKTADMKDKGADPYDL--KQQENVLGESRMMIPDCHKRLESALADLKSTLAELEE 88 (116)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhccCCHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334455555666666544556776 778899999864 4456666777777776665544
No 5
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=47.48 E-value=9.9 Score=29.60 Aligned_cols=67 Identities=13% Similarity=0.171 Sum_probs=18.0
Q ss_pred HHHHHHHHhhhhhhhhHhHHhhcCc----hhhHHHhhcCCCCcccccccccccc-eechhhHHHHHHhhHHHH
Q 023802 151 DLTVVAKELSEDGKKYLTEATENNP----EVKEIVETFTLPTEDVKEFSTLRDF-YLGIPYGLLLTLGGFISF 218 (277)
Q Consensus 151 ~L~~~ake~~e~gkeyl~~aaensp----~vK~i~et~~~~~e~~~~~s~mHDF-clgipYg~LVa~GGiiGY 218 (277)
-|..+|+.++-+..+.+....+..| ...+.++.|.... .+.+..+..+. |..+..+++++++.++.+
T Consensus 53 ~l~~ia~~L~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~i~i~~~~~~ 124 (130)
T 3fym_A 53 FIRKYASVVNIEPNQLIQAHQDEIPSNQAEWDEVITVFNNNK-DLDYKSKSKEPIQLLVIMGITVLITLLLWI 124 (130)
T ss_dssp HHHHHHHHTTCCHHHHHHHTTTTSCCCCCCC------------------------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcccchhHHHHHhcccc-cccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3778888888887776665555444 3345666666644 44555555554 444555555555555444
No 6
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=42.58 E-value=77 Score=21.83 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=27.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 023802 94 AKESEEAWKQTLAAFREQAIKMQSVSQEAYEIYS 127 (277)
Q Consensus 94 ~ees~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys 127 (277)
.+|+++.|-.||..+-+|-.++..+-....++.+
T Consensus 9 ~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~ 42 (54)
T 1nhl_A 9 AIESQDAGIKTITMLDEQKEQLNRIEEGLDQINK 42 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHh
Confidence 4689999999999999998888887776666544
No 7
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=40.43 E-value=49 Score=24.65 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhh
Q 023802 104 TLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSED 162 (277)
Q Consensus 104 ~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~ 162 (277)
....+.+--..|+++|.| |.|+|=| +|+++.||+..+|..+.+.+..|
T Consensus 11 l~~E~~~lk~E~~stSaQ--DeFAKWa---------KL~Rk~DKl~~ele~l~~~l~~~ 58 (65)
T 3sja_C 11 KVKERHELKEFNNSISAQ--DNYAKWT---------KNNRKLDSLDKEINNLKDEIQSE 58 (65)
T ss_dssp HHHHHHHHHHHHTTSCTT--TTHHHHH---------HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccchH--HHHHHHH---------HHHHHHHHHHHHHHHHHHHhhcc
Confidence 333333333456677754 6777764 49999999999999998888764
No 8
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Probab=39.29 E-value=1.1e+02 Score=26.73 Aligned_cols=16 Identities=13% Similarity=0.229 Sum_probs=8.8
Q ss_pred HHHHhhHHHHHHHHhh
Q 023802 145 AEKARKDLTVVAKELS 160 (277)
Q Consensus 145 a~ka~~~L~~~ake~~ 160 (277)
.+++++.+..+++++.
T Consensus 77 l~~~~~~~~~L~~~l~ 92 (240)
T 1j1j_A 77 FGTVKTHLTSLKTKFP 92 (240)
T ss_dssp HHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHcc
Confidence 3344445666666664
No 9
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=35.89 E-value=2.2e+02 Score=25.07 Aligned_cols=37 Identities=19% Similarity=0.135 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHhhHHHHHHHHhh
Q 023802 124 EIYSKRATAILKET----------AEQLKIEAEKARKDLTVVAKELS 160 (277)
Q Consensus 124 ~vys~ka~~vL~et----------se~L~iqa~ka~~~L~~~ake~~ 160 (277)
..+|+|+...|... .++.+...+++++.+..+++++.
T Consensus 49 t~~sk~~I~~Lhr~~~~~~~~~~~~~eA~~~l~~i~~~~~~L~~~l~ 95 (249)
T 3axj_A 49 EHLSKEAQIKLQIIHSDLSQISAACGLARKQVELCAQKYQKLAELVP 95 (249)
T ss_dssp HHHHHHHHHHHGGGGTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677766555322 23333334445555666766665
No 10
>1a87_A Colicin N; bacteriocin, toxin, pore-forming activity; 3.10A {Escherichia coli K12} SCOP: f.1.1.1
Probab=35.48 E-value=2.9e+02 Score=26.09 Aligned_cols=85 Identities=15% Similarity=0.162 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhHHHHHHH----HhhhhhhhhHhHH
Q 023802 102 KQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLK-------IEAEKARKDLTVVAK----ELSEDGKKYLTEA 170 (277)
Q Consensus 102 kq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~-------iqa~ka~~~L~~~ak----e~~e~gkeyl~~a 170 (277)
++.-++.+.-+.-|-++-++..|-|-+|+..+-+|-+++++ +-.|.|-+.+.-... -+...-++.|..|
T Consensus 124 ~~Ek~aLkdAse~ia~fy~kIsE~~GeKYk~lAkeIA~~lknfKGKkIRs~dDALksfEKyk~nlnkK~nakDR~AI~nA 203 (321)
T 1a87_A 124 KNEKEALLKASELVSGMGDKLGEYLGVKYKNVAKEVANDIKNFHGRNIRSYNEAMASLNKVLANPKMKVNKSDKDAIVNA 203 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTCCGGGCCCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHhhChhhhcchhhHHHHHHH
Confidence 34455677777889999999999999999999999988882 224445444444333 4445556777666
Q ss_pred hhcCchhhHHHhhcCCC
Q 023802 171 TENNPEVKEIVETFTLP 187 (277)
Q Consensus 171 aensp~vK~i~et~~~~ 187 (277)
-|+- +.+|+.+-|...
T Consensus 204 Lesv-d~~dmA~NL~kf 219 (321)
T 1a87_A 204 WKQV-NAKDMANKIGNL 219 (321)
T ss_dssp HHTC-CHHHHHHHHHTT
T ss_pred HHHc-CHHHHHHHHHHH
Confidence 6543 556666655443
No 11
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=33.30 E-value=53 Score=22.65 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=10.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHH
Q 023802 222 GSIPAIRFGVILGGTLLALSIAS 244 (277)
Q Consensus 222 GSi~SL~aGl~fG~lLl~aGygS 244 (277)
.+++++++|++-|.+++++-.+.
T Consensus 7 s~~~aIA~gVVgGv~~v~ii~~~ 29 (44)
T 2l2t_A 7 ARTPLIAAGVIGGLFILVIVGLT 29 (44)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceEEEeehHHHHHHHHHHHH
Confidence 34555555555555544333333
No 12
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=32.33 E-value=89 Score=31.53 Aligned_cols=71 Identities=10% Similarity=0.154 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh---hhhhhhHhHHh
Q 023802 95 KESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELS---EDGKKYLTEAT 171 (277)
Q Consensus 95 ees~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~---e~gkeyl~~aa 171 (277)
++.+..-++.++.+|.+...+|.-++++|..|-.+ .|+||.....+. |+..+-.|+. +.-.+||..-.
T Consensus 56 dkqErDltkrINELKnqLEdlsKnsKdseqy~k~~--------~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKekV 126 (562)
T 3ghg_A 56 DEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNI--------MEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKRKV 126 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH--------HHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHH--------HHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHH
Confidence 34566778889999999999999999988877433 344443333333 4444444444 33455665554
Q ss_pred hcC
Q 023802 172 ENN 174 (277)
Q Consensus 172 ens 174 (277)
+|.
T Consensus 127 dnQ 129 (562)
T 3ghg_A 127 IEK 129 (562)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 13
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=32.15 E-value=23 Score=24.38 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=13.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHh
Q 023802 222 GSIPAIRFGVILGGTLLALSIASLRSH 248 (277)
Q Consensus 222 GSi~SL~aGl~fG~lLl~aGygSLk~~ 248 (277)
.+++++++|++-|.+++++-.+....|
T Consensus 8 s~~~~IA~gVVgGv~~~~ii~~~~~~~ 34 (44)
T 2ks1_B 8 PKIPSIATGMVGALLLLLVVALGIGLF 34 (44)
T ss_dssp SCSSSSTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceEEeehhHHHHHHHHHHHHHHHH
Confidence 445566666666655544444443333
No 14
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=31.81 E-value=1.2e+02 Score=23.82 Aligned_cols=57 Identities=9% Similarity=0.146 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhh-----hhhhHhHHhhcCch
Q 023802 120 QEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSED-----GKKYLTEATENNPE 176 (277)
Q Consensus 120 ~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~-----gkeyl~~aaensp~ 176 (277)
++..+..-+.+..+.+..++++....+..+..|..+|..+... =+++|....+++|.
T Consensus 8 ~~~~~~~~~~~~~~a~~~a~~i~~~l~~~~~~l~~la~~~~~~~~~~~~~~~L~~~~~~~~~ 69 (217)
T 4dah_A 8 DTIAAEHKQEASVLLNLHRNKINYLIGETMARMTSLSIAIDRPVDIKKMQSILEKTFDSEPR 69 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCc
Confidence 3344444455556666677777888888888888888865431 13344455555553
No 15
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=31.75 E-value=66 Score=28.36 Aligned_cols=52 Identities=10% Similarity=0.087 Sum_probs=34.6
Q ss_pred echhhHHHHHHhhHHHHHhcCChhHHHHHH--HHHHHHHHHHHHHHHHhhCCCC
Q 023802 202 LGIPYGLLLTLGGFISFMVTGSIPAIRFGV--ILGGTLLALSIASLRSHKKGKT 253 (277)
Q Consensus 202 lgipYg~LVa~GGiiGY~kaGSi~SL~aGl--~fG~lLl~aGygSLk~~k~gk~ 253 (277)
+++.-.+++++..+++++.+||.+=+.-|+ +.-.+-.++.+.+++..+++.+
T Consensus 17 ~si~~n~~l~~~k~~ag~~sgS~ALlaDa~hsl~D~~s~~i~l~~~~~s~k~~d 70 (306)
T 3j1z_P 17 ASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPAD 70 (306)
T ss_dssp HHHHHHHHHTHHHHHTCTTSSSSCCCTHHHHTTHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 467777888889999999999986444443 2222333355666777777654
No 16
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=30.71 E-value=1.6e+02 Score=21.63 Aligned_cols=61 Identities=16% Similarity=0.162 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhH
Q 023802 99 EAWKQTLAAFREQAIKMQSV---SQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYL 167 (277)
Q Consensus 99 E~Wkq~L~~fkeqa~kmq~~---s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl 167 (277)
..=.+.|+.++.++..+++. ..+|-+.|... ..+.+.-+++.+.-|..++.-+..-+..|-
T Consensus 28 ~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~--------~~~W~~~a~~l~~~L~~i~~~l~~a~~~y~ 91 (103)
T 4i0x_B 28 EFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQA--------HKEWMDAARELVEGLSQMEEAARTAHGAYS 91 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456688888888888877 66666666543 455666667777777777777777666664
No 17
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=29.37 E-value=40 Score=30.43 Aligned_cols=64 Identities=14% Similarity=0.163 Sum_probs=35.5
Q ss_pred hHHHhhcCCCCcccccccccccceechhhHHHHHHhhHHHHHhcCChh-------HHHHHHHHHHHHHHHH
Q 023802 178 KEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIP-------AIRFGVILGGTLLALS 241 (277)
Q Consensus 178 K~i~et~~~~~e~~~~~s~mHDFclgipYg~LVa~GGiiGY~kaGSi~-------SL~aGl~fG~lLl~aG 241 (277)
+|++|.....+++-.+.+...=|+.++-=|+++++|+++-.......+ .+++|++|+..|++.=
T Consensus 13 ~e~~~~~~~~g~~K~~~~~~~~~~~~ilAG~~I~~g~~~~~~v~~~~~~~~~g~~~ll~g~~F~vGL~lVv 83 (285)
T 3kcu_A 13 AAMAKVAEEAGVYKATKHPLKTFYLAITAGVFISIAFVFYITATTGTGTMPFGMAKLVGGICFSLGLILCV 83 (285)
T ss_dssp ----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSCHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHH
Confidence 566777666665445566666688899999999999887666554332 5888998887766543
No 18
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=28.17 E-value=59 Score=29.45 Aligned_cols=53 Identities=17% Similarity=0.274 Sum_probs=41.5
Q ss_pred HhhhhhHHH----HHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHhhhhhhhh
Q 023802 114 KMQSVSQEA----YEIYSKRATAILKETAEQL----KIEAEKARKDLTVVAKELSEDGKKY 166 (277)
Q Consensus 114 kmq~~s~ea----Y~vys~ka~~vL~etse~L----~iqa~ka~~~L~~~ake~~e~gkey 166 (277)
-|.+.+.+. |.--|+||.+.|+|--|-+ ....|+||++.-.+++.+.++|+=-
T Consensus 210 ALKGa~~elrekil~nmS~Raa~~l~eele~~GpVr~~dVE~Aq~~Iv~~~R~L~e~GeI~ 270 (279)
T 3pkr_A 210 ALKTSTKDLTDKFLNNMSSRAAEQFVEEMQYLGAVKIKDVDVAQRKIIEIVQSLQEKGVIQ 270 (279)
T ss_dssp HTTTSCHHHHHHHHTTSCHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHcCCCHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEE
Confidence 344444443 4456899999999988876 5689999999999999999999743
No 19
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=26.08 E-value=64 Score=20.64 Aligned_cols=19 Identities=32% Similarity=0.240 Sum_probs=11.6
Q ss_pred cCChhHHHHHHHHHHHHHH
Q 023802 221 TGSIPAIRFGVILGGTLLA 239 (277)
Q Consensus 221 aGSi~SL~aGl~fG~lLl~ 239 (277)
.++++.++.|++.|.++++
T Consensus 9 ~~~~~~I~~~vv~Gv~ll~ 27 (41)
T 2k9y_A 9 GSGNLAVIGGVAVGVVLLL 27 (41)
T ss_dssp CCSSTHHHHHHHHHHHHHH
T ss_pred CCceEEEEeehhHHHHHHH
Confidence 4555666666666666555
No 20
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=25.65 E-value=1.8e+02 Score=26.99 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 023802 103 QTLAAFREQAIKMQSVSQEAYEIYSKRA 130 (277)
Q Consensus 103 q~L~~fkeqa~kmq~~s~eaY~vys~ka 130 (277)
|.+..+. .|++..-.+.|||+.|++|.
T Consensus 210 ~~v~~ln-~a~~ge~~~~~a~e~~a~~~ 236 (365)
T 3fse_A 210 DIVRGLN-TALGGERYSLEALEKYTEKE 236 (365)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHH-HHhhcChhHHHHHHHHHHhc
Confidence 4444443 56778888899999999997
No 21
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=24.91 E-value=2.1e+02 Score=21.13 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 023802 96 ESEEAWKQTLAAFREQAIKMQS 117 (277)
Q Consensus 96 es~E~Wkq~L~~fkeqa~kmq~ 117 (277)
|+++.|-.||..+-+|-.+|..
T Consensus 34 Ete~~G~~Tl~~L~~Q~Eql~r 55 (79)
T 1n7s_C 34 ESKDAGIRTLVMLDEQGEQLDR 55 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHH
Confidence 4445555555544444444433
No 22
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=24.76 E-value=3.4e+02 Score=26.74 Aligned_cols=15 Identities=27% Similarity=0.184 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHH
Q 023802 230 GVILGGTLLALSIAS 244 (277)
Q Consensus 230 Gl~fG~lLl~aGygS 244 (277)
|+-.|.+|+.+|++.
T Consensus 569 ~~p~~~~~~~~~~~~ 583 (695)
T 2j69_A 569 LGPIGFALLGLGVGF 583 (695)
T ss_dssp HHHHHHHHHHTTTTS
T ss_pred hhhHHHHHhhhhhhh
Confidence 555566666666663
No 23
>3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A*
Probab=24.13 E-value=45 Score=30.03 Aligned_cols=68 Identities=16% Similarity=0.210 Sum_probs=40.9
Q ss_pred hHHHhhcCCCCcccccccccccceechhhHHHHHHhhHHHHHhcCCh-------hHHHHHHHHHHHHHHHHHHHH
Q 023802 178 KEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSI-------PAIRFGVILGGTLLALSIASL 245 (277)
Q Consensus 178 K~i~et~~~~~e~~~~~s~mHDFclgipYg~LVa~GGiiGY~kaGSi-------~SL~aGl~fG~lLl~aGygSL 245 (277)
+|++|.....+++-.+.+...=|+.++-=|+++++|+++-....... ..+++|++|+..|++.=++..
T Consensus 12 ~e~~~~~~~~g~~K~~~~~~~~~~~~~~AG~~I~~g~~~~~~v~~~~~~~~~g~~~ll~g~~F~vGL~lVvl~g~ 86 (280)
T 3kly_A 12 PQMAERAAITGEGKAKKAAYKSFLLAISAGIQIGIAFVFYTVVTTGAHDMPYGVTKLLGGLAFSLGLILVVITGG 86 (280)
T ss_dssp ----------CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHccc
Confidence 46667666665444455566668889999999999988766655433 258899999888777665443
No 24
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=23.52 E-value=1.1e+02 Score=24.14 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=28.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Q 023802 113 IKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSE 161 (277)
Q Consensus 113 ~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e 161 (277)
..|+++|.| |.|+|=| +|+++.||+.++|..+.+.+..
T Consensus 37 ~E~~stSaQ--DeFAKWa---------KL~Rk~DKl~~ele~l~~~l~~ 74 (93)
T 3sjb_C 37 EFNNSISAQ--DNYAKWT---------KNNRKLDSLDKEINNLKDEIQS 74 (93)
T ss_dssp HHHTTSCTT--TCHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccchH--HHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 445666644 6677764 4899999999999988887765
No 25
>2e0g_A Chromosomal replication initiator protein DNAA; domain structure, structural genomics, NPPSFA; NMR {Escherichia coli K12}
Probab=23.45 E-value=15 Score=27.57 Aligned_cols=26 Identities=15% Similarity=0.534 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 023802 98 EEAWKQTLAAFREQAIKMQSVSQEAYEIYSKR 129 (277)
Q Consensus 98 ~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys~k 129 (277)
++.|.++|+.+|++ ++.+.|+-|=+.
T Consensus 2 ~~~W~~vl~~Lk~~------l~~~~f~tWi~p 27 (107)
T 2e0g_A 2 LSLWQQCLARLQDE------LPATEFSMWIRP 27 (107)
T ss_dssp CCHHHHHHHHHHHH------CSCCHHHHTTTT
T ss_pred hHHHHHHHHHHHHH------CCHHHHHHHHHh
Confidence 45899999999865 677788877654
No 26
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=23.05 E-value=56 Score=24.42 Aligned_cols=41 Identities=29% Similarity=0.416 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcCchh
Q 023802 133 ILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEV 177 (277)
Q Consensus 133 vL~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaensp~v 177 (277)
-|+...||||.|++--|.-.+..|+++ +.|...-+++-|-|
T Consensus 21 ~lr~~veqLr~el~~~RikVS~aa~~L----~~Yce~~~~~DpLl 61 (73)
T 1got_G 21 KLKMEVDQLKKEVTLERMLVSKCCEEF----RDYVEERSGEDPLV 61 (73)
T ss_dssp HHHHHHHHHHHHTTCCCCCHHHHHHHH----HHHHHHHGGGCHHH
T ss_pred HHHHHHHHHHHHHCCchhhHHHHHHHH----HHHHHhcCCCCCCc
Confidence 456677999999999898889888888 55887777777743
No 27
>3rko_K NADH-quinone oxidoreductase subunit K; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=22.97 E-value=2.4e+02 Score=21.11 Aligned_cols=29 Identities=10% Similarity=0.249 Sum_probs=23.4
Q ss_pred hhhHHHHHHhhHHHHHhcCChhHHHHHHH
Q 023802 204 IPYGLLLTLGGFISFMVTGSIPAIRFGVI 232 (277)
Q Consensus 204 ipYg~LVa~GGiiGY~kaGSi~SL~aGl~ 232 (277)
+..++++.+-|+.|++.+.+......++=
T Consensus 8 ~~~~~~lf~iGl~g~~~r~~ll~~LlslE 36 (100)
T 3rko_K 8 LILAAILFVLGLTGLVIRRNLLFMLIGLE 36 (100)
T ss_dssp HHHHHHHHHHHHHHHHHCCBHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888899999999999988877653
No 28
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=22.09 E-value=1.9e+02 Score=25.20 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=19.4
Q ss_pred HHHhhHHHHHHHHhhhhhhhhHhHHhhcCc
Q 023802 146 EKARKDLTVVAKELSEDGKKYLTEATENNP 175 (277)
Q Consensus 146 ~ka~~~L~~~ake~~e~gkeyl~~aaensp 175 (277)
+.++......+++.++.|++.+....+-+|
T Consensus 277 ~a~~~v~~~~~~~~~~~g~~~~~~~~~~~~ 306 (312)
T 2xwv_A 277 ESMKPYYAEFVKQTGQKGESALKQIEAINP 306 (312)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHhCc
Confidence 334444445566677778887777777776
No 29
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=21.71 E-value=2.2e+02 Score=20.15 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=28.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 023802 93 SAKESEEAWKQTLAAFREQAIKMQSVSQEAYEIYS 127 (277)
Q Consensus 93 ~~ees~E~Wkq~L~~fkeqa~kmq~~s~eaY~vys 127 (277)
-..|+++.|-++|..+..|-..++.....+.++-+
T Consensus 17 i~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~ 51 (65)
T 1gl2_C 17 IATETDQIGTEIIEELGEQRDQLERTKSRLVNTNE 51 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHh
Confidence 35689999999999999999999888777776543
No 30
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=21.58 E-value=2.9e+02 Score=21.60 Aligned_cols=54 Identities=19% Similarity=0.362 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHH
Q 023802 101 WKQTLAAFREQAIKMQSVSQ-EAYEIYSKRATAILKETAE---QLKIEAEKARKDLTVVA 156 (277)
Q Consensus 101 Wkq~L~~fkeqa~kmq~~s~-eaY~vys~ka~~vL~etse---~L~iqa~ka~~~L~~~a 156 (277)
..+=+++.++...||.+-.. ..|++ ++.+.||.||.- ..+....+|-.+|..+-
T Consensus 23 Y~kE~~~q~~riek~k~~~~~dey~i--Kkq~evl~Et~~mipd~~~Rl~~a~~~L~~~l 80 (106)
T 1qsd_A 23 YQQELKDQEAHVAKLKEDKSVDPYDL--KKQEEVLDDTKRLLPTLYEKIREFKEDLEQFL 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33445555666666665544 56776 778899999864 34555666666776655
No 31
>4fhr_B Flagellar motor switch protein FLIG; motor protein; 1.93A {Thermotoga maritima} PDB: 1lkv_X 3ajc_A 1qc7_A 3soh_B
Probab=21.13 E-value=94 Score=26.87 Aligned_cols=42 Identities=31% Similarity=0.516 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHhhhhhh
Q 023802 123 YEIYSKRATAILKETAEQL----KIEAEKARKDLTVVAKELSEDGK 164 (277)
Q Consensus 123 Y~vys~ka~~vL~etse~L----~iqa~ka~~~L~~~ake~~e~gk 164 (277)
+.--|+||...|+|--|-+ ....|.||++.-.+++.+.++|+
T Consensus 166 l~nmS~Raa~~l~ee~e~~gpvr~~dVe~Aq~~Iv~~~r~L~~~Ge 211 (216)
T 4fhr_B 166 FKNMSKRAAALLKDELEYMGPVRLKDVEEAQQKIINIIRRLEEAGE 211 (216)
T ss_dssp HTTSCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 4556899999999877654 36889999999999999999996
No 32
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=21.02 E-value=88 Score=28.82 Aligned_cols=43 Identities=33% Similarity=0.475 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHhhhhhh
Q 023802 122 AYEIYSKRATAILKETAEQL----KIEAEKARKDLTVVAKELSEDGK 164 (277)
Q Consensus 122 aY~vys~ka~~vL~etse~L----~iqa~ka~~~L~~~ake~~e~gk 164 (277)
-|.--|+||.+.|+|--|-+ ....|+||++.-.+++.+.++|+
T Consensus 278 il~nmS~Raa~~l~eele~~GpVr~~dVE~Aq~~Iv~~~r~L~e~Ge 324 (329)
T 3hjl_A 278 FLSNMSKRAAKLFLEDMEALGPVKKSEIEKAQRQVVNIIRKMIDEGK 324 (329)
T ss_dssp HHTTSCHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 34456899999999988876 57899999999999999999996
No 33
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=20.86 E-value=84 Score=27.25 Aligned_cols=28 Identities=29% Similarity=0.619 Sum_probs=24.6
Q ss_pred HHhhHHHHHhcCChhHHHHHHHHHHHHH
Q 023802 211 TLGGFISFMVTGSIPAIRFGVILGGTLL 238 (277)
Q Consensus 211 a~GGiiGY~kaGSi~SL~aGl~fG~lLl 238 (277)
.+-++=-|+.+|++.-|+.|++.|++..
T Consensus 24 mlkeFKeFi~RGNViDLAVgVIIGaAF~ 51 (174)
T 2oar_A 24 MLKGFKEFLARGNIVDLAVAVVIGTAFT 51 (174)
T ss_dssp CHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 5778889999999999999999999843
No 34
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=20.78 E-value=1.1e+02 Score=27.91 Aligned_cols=51 Identities=24% Similarity=0.302 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHH-HHHHHHhhhhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Q 023802 95 KESEEAWKQTLAAF-REQAIKMQSVSQEAYEIYSKRATAILKE-----------TAEQLKIEAEK 147 (277)
Q Consensus 95 ees~E~Wkq~L~~f-keqa~kmq~~s~eaY~vys~ka~~vL~e-----------tse~L~iqa~k 147 (277)
++=-|.||+.|+++ |++-.+-. ....+||--+.|+..|++ ++.||..-.||
T Consensus 7 ~tlg~~wk~~ln~l~k~~f~~y~--~~~i~e~~r~~ar~~l~~~~~~~~~YrSRaA~KL~ei~ek 69 (277)
T 3evf_A 7 KTLGEVWKRELNLLDKRQFELYK--RTDIVEVDRDTARRHLAEGKVDTGVAVSRGTAKLRWFHER 69 (277)
T ss_dssp CCHHHHHHHHHHHSCHHHHHHHH--TSSEEEECCHHHHHHHHTTCCSSCBCSSTHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHhhhHHHHHhhh--hhccccccHHHHHHHHhcCCccCCCccccHHHHHHHHHHh
Confidence 34568999999987 64432110 001112223788999988 78888877777
No 35
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=20.57 E-value=65 Score=24.66 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023802 228 RFGVILGGTLLALSIASL 245 (277)
Q Consensus 228 ~aGl~fG~lLl~aGygSL 245 (277)
+.|++|+++|.++|+.-+
T Consensus 21 igGLifA~vLfi~GI~ii 38 (74)
T 2zxe_G 21 VVGLIVAAVLCVIGIIIL 38 (74)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eccchhHHHHHHHHHHHH
Confidence 457788888888887644
No 36
>1z72_A Transcriptional regulator, putative; structu genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 1.45A {Streptococcus pneumoniae} SCOP: a.132.1.3 PDB: 2a6b_A
Probab=20.15 E-value=3.3e+02 Score=22.33 Aligned_cols=75 Identities=13% Similarity=0.211 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHH-HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHhhhhhhhhHhH
Q 023802 96 ESEEAWKQTLAA-FREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKA-----RKDLTVVAKELSEDGKKYLTE 169 (277)
Q Consensus 96 es~E~Wkq~L~~-fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka-----~~~L~~~ake~~e~gkeyl~~ 169 (277)
+.++.|+++++. |- +.+.=-.++.++|.-|=.----.|++.+.-+-.-+.|| +..+...+.++.++..++...
T Consensus 23 ~~~~~w~~~~~HPFv-~~l~~GtL~~~~f~~YL~QDy~yl~~f~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~E~~~~~~ 101 (225)
T 1z72_A 23 SSQKDWQAAINHRFV-KELFAGTIENKVLKDYLIQDYHFFDAFLSMLGACVAHADKLESKLRFAKQLGFLEADEDGYFQK 101 (225)
T ss_dssp TTHHHHHHHHTCHHH-HHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHCChHH-HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888764 33 22333458999999999998899999988888888777 344555555655544554444
Q ss_pred Hh
Q 023802 170 AT 171 (277)
Q Consensus 170 aa 171 (277)
.+
T Consensus 102 ~~ 103 (225)
T 1z72_A 102 AF 103 (225)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 37
>3v5w_G G gamma-I, guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Bos taurus} PDB: 1xhm_B 3pvu_G* 3cik_G 3krw_G* 3krx_G* 3psc_G 1omw_G* 3pvw_G* 3uzs_G 1gp2_G* 1gg2_G* 2bcj_G* 3ah8_G* 2qns_B 3kj5_B 3sn6_G*
Probab=20.12 E-value=60 Score=24.82 Aligned_cols=43 Identities=26% Similarity=0.414 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcCchhhHH
Q 023802 134 LKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEVKEI 180 (277)
Q Consensus 134 L~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaensp~vK~i 180 (277)
.+.+.||||.+|.--|.-.+..|+++ ++|...-+.+.|-|.-|
T Consensus 18 ~rk~VeQLr~Ea~i~RikVSqaaadL----~~yc~~~~~~DpLl~Gv 60 (77)
T 3v5w_G 18 ARKLVEQLKMEANIDRIKVSKAAADL----MAYCEAHAKEDPLLTPV 60 (77)
T ss_dssp HHHHHHHHHHHHSSCCCCHHHHHHHH----HHHHHHSGGGCTTTSCC
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHH----HHHHHhcCCCCCCcCCC
Confidence 35589999999999898899988888 56888888888854444
No 38
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=20.01 E-value=79 Score=23.78 Aligned_cols=18 Identities=39% Similarity=0.425 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023802 228 RFGVILGGTLLALSIASL 245 (277)
Q Consensus 228 ~aGl~fG~lLl~aGygSL 245 (277)
+.|++|+++|.++|+.-+
T Consensus 19 igGLifA~vLfi~GI~ii 36 (67)
T 2jp3_A 19 LGGLIFGGLLCIAGIALA 36 (67)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ecchhhHHHHHHHHHHHH
Confidence 456777777777776533
Done!