BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023803
(277 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GWZ6|SRR1_ARATH Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Arabidopsis thaliana
GN=SRR1 PE=2 SV=2
Length = 275
Score = 304 bits (778), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 148/259 (57%), Positives = 194/259 (74%), Gaps = 6/259 (2%)
Query: 18 DWTIVLPRRGKQ--RRNLRRIRSPEEQQKPWFPTEIESDPHRVSKLLQRIEMSIKKMESS 75
+W +VLP +G+Q RR + EE+++PW ++E DP R ++L Q++E+S+KK+ESS
Sbjct: 13 EWKVVLPSKGRQGRRRKPKPKGQAEEEEQPWKSDDLEIDPQRQARLKQKMEISLKKIESS 72
Query: 76 EFYRTLLDQIQTPEVLNSFYNVLGSESNMQMVIYGIGCLESYGPPRLQLSLAILMKRKFS 135
FY L+Q+++PEV N VLGSE+ +QMV+YGIG +ESY PR QLS+AILMKR+F
Sbjct: 73 SFYTAFLEQLKSPEVSNQIRLVLGSETQLQMVMYGIGSIESYESPRFQLSIAILMKREFD 132
Query: 136 WIGD-IEVFDPILSSTEARVLEALGCSVLSVNEQGRRCAIKPTLFYMPHCEAELYNNLLQ 194
W+GD IEVFDP+LS+TE+ LE+LGCSVLSVNEQ RR A+KPTLF+MPHCEA LY+NLLQ
Sbjct: 133 WVGDNIEVFDPVLSATESSYLESLGCSVLSVNEQARREALKPTLFFMPHCEANLYSNLLQ 192
Query: 195 ANWGA-MLKQMVLFGNSFEMYHQHVLEFKGSIVVDTARHILAARRFTHEFGIKTVSDDYF 253
ANW L ++ LFGNSF+MY + V F ++ T R I+AA+R T EF I+T SDDYF
Sbjct: 193 ANWRMDRLSKIALFGNSFQMYEEQV-SFDAEVICATKR-IIAAQRVTSEFAIETESDDYF 250
Query: 254 AGFHDSSWLFFRPDLESEL 272
A FHDSSW FF ++SEL
Sbjct: 251 AAFHDSSWHFFSSGIDSEL 269
>sp|Q8K2M3|SRR1L_MOUSE SRR1-like protein OS=Mus musculus GN=Srrd PE=2 SV=4
Length = 249
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 103/197 (52%), Gaps = 23/197 (11%)
Query: 33 LRRIRSPEEQQK--PWFPTEIESDPHRVSKLLQRIEMSIKKMESSEFYRTLLDQIQTPEV 90
LRR+R EE + + + +E+ + K L++++ + + +L Q P
Sbjct: 43 LRRLREAEEDLRISDFCSSALETITECLRKQLEQLQPLTEALGRLHLGSSLPSASQEP-- 100
Query: 91 LNSFYNVLGSESNMQMVIYGIGCLESYGPPRLQLSLAIL------MKRKFSWIGDIEVFD 144
+ S S+++ V YG+G S R+QL+ +L + R W V+D
Sbjct: 101 ------LASSASHVKCVCYGLGTFASCPTARIQLAFMLLFLEKCQVPRSHCW-----VYD 149
Query: 145 PILSSTEARVLEALGCSVLSVNEQGRRCAI-KPTLFYMPHCEAELYNNLLQANWGA-MLK 202
P+ S TE VL +LG +VLS NE+G+R +PT+FYMPHC LYNNLL +NW A L
Sbjct: 150 PLFSQTEVSVLTSLGVTVLSENEEGKRSVQGQPTVFYMPHCGTALYNNLLWSNWSADALS 209
Query: 203 QMVLFGNSFEMYHQHVL 219
++++ GNSF + +L
Sbjct: 210 RVLIIGNSFRGLEERLL 226
>sp|Q9UH36|SRR1L_HUMAN SRR1-like protein OS=Homo sapiens GN=SRRD PE=2 SV=1
Length = 339
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 70/125 (56%), Gaps = 13/125 (10%)
Query: 103 NMQMVIYGIGCLESYGPPRLQLSLAIL------MKRKFSWIGDIEVFDPILSSTEARVLE 156
+++ V YGIG + R QL+ +L + R W V+DP+ S E VL
Sbjct: 138 HLKCVCYGIGNFATCIVARNQLTFLLLLLEKCQIPRSHCW-----VYDPLFSQLEIEVLN 192
Query: 157 ALGCSVLSVNEQGRRCAI-KPTLFYMPHCEAELYNNLLQANWGA-MLKQMVLFGNSFEMY 214
LG +VLS NE+G+R +PT+FYM HC LYNNLL +NW L +MV+ GNSF+
Sbjct: 193 TLGVTVLSENEEGKRSIRGEPTIFYMLHCGTALYNNLLWSNWSVDALSKMVIIGNSFKGL 252
Query: 215 HQHVL 219
+ +L
Sbjct: 253 EERLL 257
>sp|Q9VEB5|SRR1L_DROME SRR1-like protein OS=Drosophila melanogaster GN=CG7988 PE=1 SV=1
Length = 276
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 89/198 (44%), Gaps = 13/198 (6%)
Query: 17 EDWTIVLPRRGKQRRNLRRIRSPEEQQKPWFPTEIESDPHRVSKLLQRIEMSIKKMESSE 76
ED+ +V ++ R+ LRR R + + + I+ V K R+E +M S+
Sbjct: 6 EDFQVVTRKKWMARKCLRR-RDRHKSESDYL---IDCPDVNVEKFQPRLENLCTEMCQSD 61
Query: 77 FYRTLLDQIQTPEVLNSFYNVLGSESNMQMVIYGIGCLESYGPPRLQLSLAILMKRKFSW 136
++ ++ +Q + L L ++V G+G Q + I + R
Sbjct: 62 YFLVAMEALQ--QQLEGIRKPLE-----RIVCLGLGPFSRTYHALHQAAFVIGLHRHHK- 113
Query: 137 IGDIEVFDPILSSTEARVLEALGCSVLSVNEQGRRCAIKPTLFYMPHCEAELYNNLLQAN 196
I + FDP+ +E ++ ++S + G+ A PTL+Y+PHC L +N+L +N
Sbjct: 114 IREALYFDPVFRDSEKELIRLFDGCIMSKDCAGKHEATVPTLYYLPHCPYALMHNILWSN 173
Query: 197 WG-AMLKQMVLFGNSFEM 213
W L + L NSFEM
Sbjct: 174 WKRETLPNVFLISNSFEM 191
>sp|O60093|SRR1L_SCHPO SRR1-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=SPBC14C8.13 PE=3 SV=1
Length = 251
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 15/167 (8%)
Query: 49 TEIESDPHRVSKLLQRIEMSIKKMESSEFYRTLLDQIQTPEVLNSFYNVLGSESNMQMVI 108
T+ ++D L ++++ S +K+E SEF +++ Q L+ F + + + +I
Sbjct: 27 TQGDTDLWSQDTLQRKLDNSREKLEYSEFLKSVQSQ------LSEFKDPIH-----KCII 75
Query: 109 YGIGCLESYGPPRLQLSLAILMKRKFSWIGDI-EVFDPILSSTEARVLEALGCSVLSVNE 167
G+G + + LQLSL + + F+ +DP + LE G VL +
Sbjct: 76 LGLGRIHTLTA-SLQLSLFFEIMKIFNLQPRFCSFYDPAFLKDDVEFLENKGFCVLP--D 132
Query: 168 QGRRCAIKPTLFYMPHCEAELYNNLLQANWGAMLKQMVLFGNSFEMY 214
+K TL YMPHC LY L A + ++ GN+ ++Y
Sbjct: 133 PPTPSCLKYTLLYMPHCPTSLYETWLAAYVNDDPRHFIMCGNNLQLY 179
>sp|C7CM35|RUTB_METED Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB
OS=Methylobacterium extorquens (strain DSM 5838 / DM4)
GN=rutB PE=3 SV=1
Length = 248
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 118 GPPRLQLSLAILMKRKFSWIGDIEVFDPILSSTEARVLEA 157
GPP LQ ++ F W+ D+ F+ LSS EAR + A
Sbjct: 209 GPPALQEGALRNIETFFGWVSDVAAFEAALSSDEARRIPA 248
>sp|A9W3I0|RUTB_METEP Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB
OS=Methylobacterium extorquens (strain PA1) GN=rutB PE=3
SV=1
Length = 248
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 118 GPPRLQLSLAILMKRKFSWIGDIEVFDPILSSTEARVLEA 157
GPP LQ ++ F W+ D+ F+ LSS EAR + A
Sbjct: 209 GPPALQEGALRNIETFFGWVSDVAAFEAALSSDEARRIPA 248
>sp|B7KWT6|RUTB_METC4 Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB
OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB
13688) GN=rutB PE=3 SV=1
Length = 248
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 118 GPPRLQLSLAILMKRKFSWIGDIEVFDPILSSTEARVLEA 157
GPP LQ ++ F W+ D+ F+ LSS EAR + A
Sbjct: 209 GPPALQEGALRNIETFFGWVSDVAAFEAALSSDEARRIPA 248
>sp|C5B0U8|RUTB_METEA Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB
OS=Methylobacterium extorquens (strain ATCC 14718 / DSM
1338 / AM1) GN=rutB PE=3 SV=1
Length = 248
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 118 GPPRLQLSLAILMKRKFSWIGDIEVFDPILSSTEARVLEA 157
GPP LQ ++ F W+ D+ F+ LSS EAR + A
Sbjct: 209 GPPALQEGALRNIETFFGWVSDVAAFEAALSSDEARRIPA 248
>sp|Q06688|SRR1L_YEAST SRR1-like protein BER1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=BER1 PE=1 SV=1
Length = 274
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 140 IEVFDPILSSTEARVLEALGCSVLSVNEQGRRCAI--KPTLFYMPHCEAELYNNLLQA 195
+ ++DPI + E + L++LG L E AI + L+++PH +L N+L +
Sbjct: 95 VSLYDPIFTKEEIQYLKSLGSKWLIEEEFSENDAIDYESVLYFLPHAPLDLTENILSS 152
>sp|P77180|YKGH_ECOLI Uncharacterized protein YkgH OS=Escherichia coli (strain K12)
GN=ykgH PE=4 SV=1
Length = 222
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 62 LQRIEMSIKKMESSEFY--RTLLDQIQTPEVLNS--FYNVLGSESNMQMVIYGIGCLESY 117
+ R++ SI K +SE++ R +LD+IQTP +NS + ++ N + G GC+
Sbjct: 119 ISRVQASIIKWYASEYHNGRQVLDEIQTPSAINSELYTKMIYLTRNWSLYPNGDGCVTIS 178
Query: 118 GP 119
P
Sbjct: 179 SP 180
>sp|Q8IBB8|YPF15_PLAF7 Uncharacterized protein MAL8P1.12 OS=Plasmodium falciparum (isolate
3D7) GN=MAL8P1.12 PE=4 SV=1
Length = 1033
Score = 32.3 bits (72), Expect = 4.3, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 21 IVLPRRGKQRRNLRRIRSPEEQQKPWFPTEIESDPHRVSKLLQRIEMSIKK--MESSEFY 78
I+ ++ K ++++ P E Q ++ +I+ D + + L++I I K +E+ F
Sbjct: 774 IICNQKNKDQKDI----CPNENQHIYYKMKIDQDIINLKEQLKKINEQIDKENIETKNFQ 829
Query: 79 RTLLDQIQTPEVLN 92
RTL D IQT + N
Sbjct: 830 RTLDDIIQTNKEFN 843
>sp|P29013|YCGB_ECOLI Uncharacterized protein YcgB OS=Escherichia coli (strain K12)
GN=ycgB PE=4 SV=2
Length = 510
Score = 30.8 bits (68), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 13/98 (13%)
Query: 31 RNLRRI-RSPEEQQKPWFPTEIESDPHRVSKLLQRIEMSIKKMESSEFYRTLLDQIQTPE 89
++++RI +SP E+ K WFP SD L+ + +++ + F + Q +P+
Sbjct: 343 QDIKRICQSPTEEDKYWFPDIAGSD------WLETLHFAMRDFKDESF----ISQFLSPK 392
Query: 90 VLNS--FYNVLGSESNMQMVIYGIGCLESYGPPRLQLS 125
V+ F+ VL + + + I I E Y R +LS
Sbjct: 393 VMRDFRFFTVLDDDRHNYLEISAIHNEEGYREIRNRLS 430
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,800,976
Number of Sequences: 539616
Number of extensions: 3737576
Number of successful extensions: 9364
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 9345
Number of HSP's gapped (non-prelim): 14
length of query: 277
length of database: 191,569,459
effective HSP length: 116
effective length of query: 161
effective length of database: 128,974,003
effective search space: 20764814483
effective search space used: 20764814483
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)