Query 023803
Match_columns 277
No_of_seqs 183 out of 236
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 13:03:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023803.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023803hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pq4_A Periplasmic binding pro 30.4 2.1E+02 0.0073 25.1 8.7 48 117-166 219-267 (291)
2 2fl7_A Regulatory protein SIR3 27.9 18 0.00061 32.0 1.0 15 1-23 4-18 (232)
3 1rpb_A Tricyclic peptide RP 71 24.9 12 0.00042 21.5 -0.4 8 108-115 1-8 (26)
4 3eag_A UDP-N-acetylmuramate:L- 24.6 2E+02 0.0067 25.5 7.4 74 102-186 3-78 (326)
5 1a8s_A Chloroperoxidase F; hal 20.9 3.1E+02 0.01 22.0 7.4 17 200-216 84-100 (273)
6 3g9k_S Capsule biosynthesis pr 20.6 1.4E+02 0.0048 24.8 5.2 57 108-164 71-139 (177)
7 3vtf_A UDP-glucose 6-dehydroge 20.5 67 0.0023 30.7 3.5 48 102-154 332-383 (444)
8 2dg5_B Gamma-glutamyltranspept 20.3 2.2E+02 0.0076 23.7 6.4 59 107-165 85-157 (190)
9 1brt_A Bromoperoxidase A2; hal 19.2 2.8E+02 0.0094 22.6 6.8 17 201-217 89-105 (277)
10 3kgk_A Arsenical resistance op 18.9 69 0.0024 25.0 2.7 28 138-165 2-46 (110)
No 1
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=30.37 E-value=2.1e+02 Score=25.08 Aligned_cols=48 Identities=13% Similarity=0.156 Sum_probs=36.8
Q ss_pred CchhHHHHHHHHHHHHHhCcCCceEEeCCCCCHHHHHHH-HHcCceEeccC
Q 023803 117 YGPPRLQLSLAILMKRKFSWIGDIEVFDPILSSTEARVL-EALGCSVLSVN 166 (277)
Q Consensus 117 ~~~a~~QLAlll~L~~~l~~~~~v~~yDPvft~~D~~~l-~~LG~~Vl~~n 166 (277)
..++--||+-++..++.-+ -.|.|++|.+++.=.+.| +..|..|+.-+
T Consensus 219 ~eps~~~l~~l~~~ik~~~--v~~If~e~~~~~~~~~~ia~~~g~~v~~ld 267 (291)
T 1pq4_A 219 QEPSAQELKQLIDTAKENN--LTMVFGETQFSTKSSEAIAAEIGAGVELLD 267 (291)
T ss_dssp BCCCHHHHHHHHHHHHTTT--CCEEEEETTSCCHHHHHHHHHHTCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHcC--CCEEEEeCCCChHHHHHHHHHcCCeEEEEc
Confidence 5667778888888777644 268999999998777777 67898876543
No 2
>2fl7_A Regulatory protein SIR3; ORC, silencing, chromatin, transcription; 1.85A {Saccharomyces cerevisiae} PDB: 2fvu_A 3tu4_K*
Probab=27.87 E-value=18 Score=32.00 Aligned_cols=15 Identities=27% Similarity=0.620 Sum_probs=6.7
Q ss_pred CCCCCcccCCcccccCCCcEEec
Q 023803 1 MAASSKVIGPETHMLNEDWTIVL 23 (277)
Q Consensus 1 ~~a~~~~~~~~~~~~~~~W~~V~ 23 (277)
||+..| +-.||+.+.
T Consensus 4 MA~t~k--------dl~GW~i~~ 18 (232)
T 2fl7_A 4 MAKTLK--------DLDGWQVII 18 (232)
T ss_dssp ---------------CTTEEEEE
T ss_pred hhhhhh--------hhcCcEEEE
Confidence 666665 457999887
No 3
>1rpb_A Tricyclic peptide RP 71955; HIV replication inhibitor, replication inhibitor; NMR {Actinomycete SP9440} SCOP: j.24.1.1 PDB: 1rpc_A
Probab=24.90 E-value=12 Score=21.52 Aligned_cols=8 Identities=38% Similarity=0.650 Sum_probs=5.3
Q ss_pred EEecCCCC
Q 023803 108 IYGIGCLE 115 (277)
Q Consensus 108 clGLGsf~ 115 (277)
|||+||-.
T Consensus 1 clgigscn 8 (26)
T 1rpb_A 1 CLGIGSCN 8 (26)
T ss_dssp CBSCSSBC
T ss_pred Ccceeccc
Confidence 67777743
No 4
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=24.59 E-value=2e+02 Score=25.49 Aligned_cols=74 Identities=19% Similarity=0.123 Sum_probs=44.8
Q ss_pred CcceEEEEecCCCCCCchhHHHHHHHHHHHHHhCcCCceEEeCCCCCHHHHHHHHHcCceEeccCccccccC--CCCeEE
Q 023803 102 SNMQMVIYGIGCLESYGPPRLQLSLAILMKRKFSWIGDIEVFDPILSSTEARVLEALGCSVLSVNEQGRRCA--IKPTLF 179 (277)
Q Consensus 102 ~i~~ivclGLGsf~~~~~a~~QLAlll~L~~~l~~~~~v~~yDPvft~~D~~~l~~LG~~Vl~~n~~g~~~~--~~~TLf 179 (277)
...+|.++|+|.-- +- |+...|.+. . .+|..+|-.-.+...+.|+.+|+.+..... ..... +...++
T Consensus 3 ~~~~i~~iGiGg~G-----ms--~~A~~L~~~-G--~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~-~~~l~~~~~d~vV 71 (326)
T 3eag_A 3 AMKHIHIIGIGGTF-----MG--GLAAIAKEA-G--FEVSGCDAKMYPPMSTQLEALGIDVYEGFD-AAQLDEFKADVYV 71 (326)
T ss_dssp CCCEEEEESCCSHH-----HH--HHHHHHHHT-T--CEEEEEESSCCTTHHHHHHHTTCEEEESCC-GGGGGSCCCSEEE
T ss_pred CCcEEEEEEECHHH-----HH--HHHHHHHhC-C--CEEEEEcCCCCcHHHHHHHhCCCEEECCCC-HHHcCCCCCCEEE
Confidence 35789999999432 11 122233322 2 379999976655456678999998864311 11111 345788
Q ss_pred EecCCCH
Q 023803 180 YMPHCEA 186 (277)
Q Consensus 180 ymPHc~~ 186 (277)
+.|.-+.
T Consensus 72 ~Spgi~~ 78 (326)
T 3eag_A 72 IGNVAKR 78 (326)
T ss_dssp ECTTCCT
T ss_pred ECCCcCC
Confidence 8888864
No 5
>1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12
Probab=20.86 E-value=3.1e+02 Score=21.97 Aligned_cols=17 Identities=35% Similarity=0.245 Sum_probs=13.9
Q ss_pred ccCcEEEEecChhHHHH
Q 023803 200 MLKQMVLFGNSFEMYHQ 216 (277)
Q Consensus 200 ~L~~~vliGNsf~~~~~ 216 (277)
.+.+++++|.|++++.-
T Consensus 84 ~~~~~~lvGhS~Gg~ia 100 (273)
T 1a8s_A 84 DLRDAVLFGFSTGGGEV 100 (273)
T ss_dssp TCCSEEEEEETHHHHHH
T ss_pred CCCCeEEEEeChHHHHH
Confidence 35689999999998755
No 6
>3g9k_S Capsule biosynthesis protein CAPD; CAPD protein, the great lakes regional C excellence, GLRCE, capsule biogenesis/degradation; HET: GLU; 1.79A {Bacillus anthracis} PDB: 3ga9_S*
Probab=20.63 E-value=1.4e+02 Score=24.77 Aligned_cols=57 Identities=18% Similarity=0.119 Sum_probs=44.2
Q ss_pred EEecCCCCCCchhHHHHHHHHHHHHHh-------C-----cCCceEEeCCCCCHHHHHHHHHcCceEec
Q 023803 108 IYGIGCLESYGPPRLQLSLAILMKRKF-------S-----WIGDIEVFDPILSSTEARVLEALGCSVLS 164 (277)
Q Consensus 108 clGLGsf~~~~~a~~QLAlll~L~~~l-------~-----~~~~v~~yDPvft~~D~~~l~~LG~~Vl~ 164 (277)
.+.+|++-.+.....++-+++-+.+.= + ..+....+++-|.+.-.+.|+.+|+.|..
T Consensus 71 ~l~~Gs~GG~~i~~~~~q~l~n~ld~gm~~q~Ai~aPR~~~~~~~~~~E~~~~~~~~~~L~~~Gh~v~~ 139 (177)
T 3g9k_S 71 TIGIGSPGGNRIPQILTPILDKYTHGKGSLQDIINEYRFTFEKNTAYTEIQLSSEVKNELSRKGLNVKK 139 (177)
T ss_dssp EEEEECCCGGGHHHHHHHHHHHHHTTCSCHHHHHHSCCEEEETTEEEESSCCCHHHHHHHHTTTCEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCHHHHHhCCeeecCCCeEEEcCCCCHHHHHHHHHcCCeeEE
Confidence 788999999998888887777766531 1 01246678999999999999999998854
No 7
>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}
Probab=20.54 E-value=67 Score=30.71 Aligned_cols=48 Identities=13% Similarity=0.233 Sum_probs=27.1
Q ss_pred CcceEEEEecCCCC----CCchhHHHHHHHHHHHHHhCcCCceEEeCCCCCHHHHHH
Q 023803 102 SNMQMVIYGIGCLE----SYGPPRLQLSLAILMKRKFSWIGDIEVFDPILSSTEARV 154 (277)
Q Consensus 102 ~i~~ivclGLGsf~----~~~~a~~QLAlll~L~~~l~~~~~v~~yDPvft~~D~~~ 154 (277)
.-.+|.+|||.==. -+.++-..++ -.|.+. . .+|.+|||...+..++.
T Consensus 332 ~g~~V~vlGlafK~~tdD~ReSpa~~ii--~~L~~~-G--a~V~~~DP~~~~~~~~~ 383 (444)
T 3vtf_A 332 RGRHVGVLGLAFKPNTDDVRESRGVEVA--RLLLER-G--ARVYVHDPMAMEKARAV 383 (444)
T ss_dssp TTCEEEEECCSSSSSCCCCTTCHHHHHH--HHHHHT-T--CEEEEECSSTHHHHHHH
T ss_pred CCCEEEEEeeecCCCCCccccCcHHHHH--HHHHHC-C--CEEEEECCCCChHHHHh
Confidence 45689999995222 2233333332 223332 2 37999999886554443
No 8
>2dg5_B Gamma-glutamyltranspeptidase; gamma-glutamyltransferase, GGT, gamma-GT, glutathione; HET: GLU; 1.60A {Escherichia coli K12} SCOP: d.153.1.6 PDB: 2dbu_B 2dbw_B* 2dbx_B* 2e0x_B 2e0y_B 2z8i_B* 2z8j_B* 2z8k_B*
Probab=20.31 E-value=2.2e+02 Score=23.73 Aligned_cols=59 Identities=17% Similarity=0.092 Sum_probs=44.3
Q ss_pred EEEecCCCCCCchhHHHHHHHHHHHHH-------hC-------cCCceEEeCCCCCHHHHHHHHHcCceEecc
Q 023803 107 VIYGIGCLESYGPPRLQLSLAILMKRK-------FS-------WIGDIEVFDPILSSTEARVLEALGCSVLSV 165 (277)
Q Consensus 107 vclGLGsf~~~~~a~~QLAlll~L~~~-------l~-------~~~~v~~yDPvft~~D~~~l~~LG~~Vl~~ 165 (277)
..+.+|++-.+.....++-+++-+.+. +. +.+....+++-|.+.-.+.|+.+|+.|...
T Consensus 85 ~~l~~Gs~GG~~i~~~~~q~l~n~ld~gm~~q~Ai~aPR~~~~~~~~~~~~E~~~~~~~~~~L~~~Gh~v~~~ 157 (190)
T 2dg5_B 85 TWLVTGSPGGSRIITTVLQMVVNSIDYGLNVAEATNAPRFHHQWLPDELRVEKGFSPDTLKLLEAKGQKVALK 157 (190)
T ss_dssp EEEEECCCCGGGHHHHHHHHHHHHHTSCCCHHHHHHSCCEECCSSSCCEEECTTSCHHHHHHHHHTTCCEEEC
T ss_pred EEEEEECCCcchHHHHHHHHHHHHHccCCCHHHHhhCCEEeeccCCCeEEecCCCCHHHHHHHHhCCcEeEEe
Confidence 578999999999888887777776653 11 012346678899999999999999987543
No 9
>1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta hydrolase fold, mutant M99T; 1.50A {Streptomyces aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A
Probab=19.25 E-value=2.8e+02 Score=22.56 Aligned_cols=17 Identities=29% Similarity=0.186 Sum_probs=13.4
Q ss_pred cCcEEEEecChhHHHHh
Q 023803 201 LKQMVLFGNSFEMYHQH 217 (277)
Q Consensus 201 L~~~vliGNsf~~~~~~ 217 (277)
+.+++++|.|++++.-.
T Consensus 89 ~~~~~lvGhS~Gg~va~ 105 (277)
T 1brt_A 89 LQDAVLVGFSTGTGEVA 105 (277)
T ss_dssp CCSEEEEEEGGGHHHHH
T ss_pred CCceEEEEECccHHHHH
Confidence 56899999999976543
No 10
>3kgk_A Arsenical resistance operon trans-acting represso; alpha+beta, chaperone, DNA-binding, RE transcription, transcription regulation; 1.40A {Escherichia coli} PDB: 3mwh_A
Probab=18.90 E-value=69 Score=24.98 Aligned_cols=28 Identities=29% Similarity=0.498 Sum_probs=19.4
Q ss_pred CceEEeCCCCC-----------------HHHHHHHHHcCceEecc
Q 023803 138 GDIEVFDPILS-----------------STEARVLEALGCSVLSV 165 (277)
Q Consensus 138 ~~v~~yDPvft-----------------~~D~~~l~~LG~~Vl~~ 165 (277)
+++.+|||.+. ..|.+.|+.-|++|..-
T Consensus 2 ~~i~ifepamCCstGvCG~~vd~~L~~~~~~~~~lk~~Gi~V~Ry 46 (110)
T 3kgk_A 2 KTLMVFDPAMAASTGVCGTDVDQALVDFSTDVQWLKQSGVQIERF 46 (110)
T ss_dssp CCEEEEECC-------------CHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CceEEecchhccccCCcCCCCCHHHHHHHHHHHHHHHCCCeEEEE
Confidence 36899999985 45677778888887543
Done!