BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023804
(277 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O13942|YEPC_SCHPO Uncharacterized protein C23H3.12c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC23H3.12c PE=4 SV=1
Length = 226
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 73/128 (57%), Gaps = 12/128 (9%)
Query: 77 APQGSMKNKIHGLGLKLLSGVKPSEMFLKSIS--KEVSQVE------VTYPSSLNARLVR 128
A + K K+ LG ++L E FL++I+ K+++ E + +P +L + +
Sbjct: 46 ASKSYTKQKVVSLGNRILHATPYEENFLRAIAPVKKLNDTELHQTLYIEHPPNLESSTIL 105
Query: 129 RRL-RHIAMRGTILHNKYLYGSVSLLPLTFVFSVLPL-PNVPFFWILYRTYSHWRALQGS 186
L R ++ T H YL G++ LPLT F ++PL PN+P F++ YR Y ++RA+QGS
Sbjct: 106 AELNRSKQLQKT--HTNYLIGNIIGLPLTIPFILIPLIPNIPGFYLCYRAYCNFRAIQGS 163
Query: 187 EKLLQLVS 194
+L +++S
Sbjct: 164 IQLARVMS 171
>sp|Q55311|SRP54_SYNE7 Signal recognition particle protein OS=Synechococcus elongatus
(strain PCC 7942) GN=ffh PE=3 SV=1
Length = 485
Score = 38.5 bits (88), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%)
Query: 38 LKQLWHKLTSSEKHNSNNVELVVDFVSHKMNNAWIGLEKAPQGSMKNKIHGLGLKLLSGV 97
L+Q W KL +K + +NV+ + V + A + L + + + +G +++SG+
Sbjct: 9 LEQAWTKLRGQDKISESNVQEALKEVRRALLEADVNLGVVKEFIAQVQEKAVGTQVISGI 68
Query: 98 KPSEMFLKSISKEVSQV 114
+P + F+K + E+ QV
Sbjct: 69 RPDQQFIKVVYDELVQV 85
>sp|A0L1H3|SYR_SHESA Arginine--tRNA ligase OS=Shewanella sp. (strain ANA-3) GN=argS PE=3
SV=1
Length = 581
Score = 35.0 bits (79), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 145 YLYGSVSLLPLTFVFSVLPLPNVPFFWILYRTYSHWRALQGSEKLLQLVSNDSHTQNFGF 204
YLY + L + + SVL V +F L R H++ + KL + V ND ++ GF
Sbjct: 317 YLYATTDLAAMRYRSSVLKADRVLYFVDL-RQALHFQQVFSLAKLAKFVRNDMSLEHLGF 375
Query: 205 SNVKGSEA 212
+ G +
Sbjct: 376 GTMNGEDG 383
>sp|Q0HEF5|SYR_SHESM Arginine--tRNA ligase OS=Shewanella sp. (strain MR-4) GN=argS PE=3
SV=1
Length = 581
Score = 35.0 bits (79), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 145 YLYGSVSLLPLTFVFSVLPLPNVPFFWILYRTYSHWRALQGSEKLLQLVSNDSHTQNFGF 204
YLY + L + + SVL V +F L R H++ + KL + V ND ++ GF
Sbjct: 317 YLYATTDLAAMRYRSSVLKADRVLYFVDL-RQALHFQQVFSLAKLAKFVRNDMSLEHLGF 375
Query: 205 SNVKGSEA 212
+ G +
Sbjct: 376 GTMNGEDG 383
>sp|Q0HZJ6|SYR_SHESR Arginine--tRNA ligase OS=Shewanella sp. (strain MR-7) GN=argS PE=3
SV=1
Length = 581
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 145 YLYGSVSLLPLTFVFSVLPLPNVPFFWILYRTYSHWRALQGSEKLLQLVSNDSHTQNFGF 204
YLY + L + + SVL V +F L R H++ + KL + V ND ++ GF
Sbjct: 317 YLYATTDLAAMRYRSSVLKADRVLYFVDL-RQALHFQQVFSLAKLAKFVRNDMSLEHLGF 375
Query: 205 SNVKGSEA 212
+ G +
Sbjct: 376 GTMNGEDG 383
>sp|P48569|YD183_YEAST Uncharacterized protein YDL183C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YDL183C PE=1 SV=1
Length = 320
Score = 34.7 bits (78), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 129 RRLRHIAMRGTILHNKY-LYGSVSLLPLTFVFSVLPLPNVPFFWILYRTYSHWRALQGSE 187
R+++ + G I H K+ LY + L + + +PNVP F++ YR Y + +A G++
Sbjct: 176 RQMKKLYQEGLIYHKKWTLYCLLGLPLTIPLILIPLIPNVPGFYLSYRAYVNIKAYLGAK 235
Query: 188 KLLQLVSNDSHTQNFGFSNVKG-SEAEHNNSECETSNLQ----GVPSILV 232
L L+ +S QN F + G +E + T Q G P +L+
Sbjct: 236 HLKSLL--ESSKQNLEFRELLGYTEVYKRGTSSRTQGNQKESKGAPELLL 283
>sp|P74214|SRP54_SYNY3 Signal recognition particle protein OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=ffh PE=3 SV=1
Length = 482
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 38 LKQLWHKLTSSEKHNSNNVELVVDFVSHKMNNAWIGLEKAPQGSMKN-KIHGLGLKLLSG 96
L+ W KL +K + +N++ + V + A + L+ +G +K+ + LG ++SG
Sbjct: 9 LEDAWKKLRGQDKISESNIKEALQEVRRALLAADVNLQ-VVKGFIKDVEQKALGADVISG 67
Query: 97 VKPSEMFLKSISKEV 111
V P + F+K + E+
Sbjct: 68 VNPGQQFIKIVYDEL 82
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,866,272
Number of Sequences: 539616
Number of extensions: 4271899
Number of successful extensions: 10182
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 10177
Number of HSP's gapped (non-prelim): 11
length of query: 277
length of database: 191,569,459
effective HSP length: 116
effective length of query: 161
effective length of database: 128,974,003
effective search space: 20764814483
effective search space used: 20764814483
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)