Query 023804
Match_columns 277
No_of_seqs 113 out of 126
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 13:04:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023804.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023804hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1utxa_ a.35.1.3 (A:) Putative 49.8 4.9 0.00036 26.4 2.6 28 248-275 38-65 (66)
2 d2r1jl1 a.35.1.2 (L:3-68) P22 46.2 4.9 0.00036 26.2 2.1 25 248-272 40-64 (66)
3 d2jxca1 a.39.1.6 (A:121-215) E 39.5 3.7 0.00027 29.1 0.6 46 228-273 1-48 (95)
4 d1y9qa1 a.35.1.8 (A:4-82) Prob 37.9 12 0.0009 24.9 3.2 26 248-273 45-70 (79)
5 d1b0na2 a.35.1.3 (A:1-68) SinR 37.4 7.8 0.00057 25.4 2.0 27 249-275 40-66 (68)
6 d1j3ea_ d.228.1.1 (A:) Replica 36.1 19 0.0014 27.3 4.4 35 223-262 73-114 (115)
7 d2o3fa1 a.4.1.20 (A:1-83) Puta 30.9 12 0.00091 26.0 2.3 19 248-266 45-63 (83)
8 d1fi6a_ a.39.1.6 (A:) Reps1 {M 28.4 11 0.00077 26.2 1.5 23 250-272 25-47 (92)
9 d2b5aa1 a.35.1.3 (A:1-77) Regu 28.3 15 0.0011 24.4 2.2 26 248-273 47-72 (77)
10 d2ofya1 a.35.1.3 (A:3-84) Puta 28.3 11 0.00083 26.2 1.6 26 249-274 51-76 (82)
11 d1c07a_ a.39.1.6 (A:) Eps15 {H 28.1 12 0.0009 26.0 1.8 17 250-266 40-56 (95)
12 d1y7ya1 a.35.1.3 (A:5-73) Rest 27.6 22 0.0016 23.1 3.0 23 248-270 46-68 (69)
13 d1lmb3_ a.35.1.2 (3:) lambda C 27.3 21 0.0016 24.5 3.1 24 248-271 49-72 (87)
14 d1wh7a_ a.4.1.1 (A:) ZF-HD hom 26.9 19 0.0014 24.9 2.6 37 235-271 30-66 (80)
15 d1iq3a_ a.39.1.6 (A:) Pob1 {Hu 26.4 15 0.0011 26.5 2.2 50 225-274 10-62 (110)
16 d1y7ma2 d.7.1.1 (A:1-48) Hypot 25.8 10 0.00075 23.8 0.9 23 253-275 9-31 (48)
No 1
>d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2 {Enterococcus faecalis [TaxId: 1351]}
Probab=49.81 E-value=4.9 Score=26.43 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=24.7
Q ss_pred CCCCCHHHHHHHHhhhCCCccccccccc
Q 023804 248 DDGLSKCAILNICTIYKLNPIDVLKYRN 275 (277)
Q Consensus 248 ~~~l~~~~i~~ic~~~~l~~~d~~k~~~ 275 (277)
....+-+++..||+.||++.+|+..|.+
T Consensus 38 ~~~p~~~~l~~ia~~l~v~~~~lf~~~~ 65 (66)
T d1utxa_ 38 KYNPSLQLALKIAYYLNTPLEDIFQWQP 65 (66)
T ss_dssp SCCCCHHHHHHHHHHTTSCHHHHEEECC
T ss_pred CCCCCHHHHHHHHHHHCCCHHHHcCCCC
Confidence 5679999999999999999999987754
No 2
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=46.16 E-value=4.9 Score=26.24 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHhhhCCCcccccc
Q 023804 248 DDGLSKCAILNICTIYKLNPIDVLK 272 (277)
Q Consensus 248 ~~~l~~~~i~~ic~~~~l~~~d~~k 272 (277)
....+.+++..||+.|+++.++|+.
T Consensus 40 ~~~p~~~~l~~ia~~l~v~~~~Ll~ 64 (66)
T d2r1jl1 40 ETEPNGENLLALSKALQCSPDYLLK 64 (66)
T ss_dssp SSCCBHHHHHHHHHHTTSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCHHHHhc
Confidence 5568999999999999999999875
No 3
>d2jxca1 a.39.1.6 (A:121-215) Eps15 {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.53 E-value=3.7 Score=29.14 Aligned_cols=46 Identities=15% Similarity=0.047 Sum_probs=26.5
Q ss_pred ccccCCchhH--HHHHhhCCCCCCCCCHHHHHHHHhhhCCCccccccc
Q 023804 228 PSILVPSGEL--EELIHSGGKTDDGLSKCAILNICTIYKLNPIDVLKY 273 (277)
Q Consensus 228 ~~~~~~s~~l--~~~~~~~~~~~~~l~~~~i~~ic~~~~l~~~d~~k~ 273 (277)
||.+.|++.- +++...-|.++.-|+.+.+..+..+.+|+.++|-+.
T Consensus 1 pw~ls~ee~~~y~~~F~~~D~~~G~i~~~el~~~l~~~gl~~~~L~~I 48 (95)
T d2jxca1 1 PWAVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPVDILGRV 48 (95)
T ss_dssp CCSSCHHHHHHHHHHHHHTCCBTTEEEHHHHHHHHTTSSCCHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHHHcCCCHHHHHHH
Confidence 5666666652 444444443233377777777777777776655443
No 4
>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=37.92 E-value=12 Score=24.94 Aligned_cols=26 Identities=4% Similarity=0.022 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHHhhhCCCccccccc
Q 023804 248 DDGLSKCAILNICTIYKLNPIDVLKY 273 (277)
Q Consensus 248 ~~~l~~~~i~~ic~~~~l~~~d~~k~ 273 (277)
.-..+-+++..||+.||++.+|++..
T Consensus 45 ~~~p~~~~l~~ia~~l~v~~~~l~~~ 70 (79)
T d1y9qa1 45 ESSPTIATLWKIASGLEASFSAFFAN 70 (79)
T ss_dssp CSCCCHHHHHHHHHHHTCCSGGGGTT
T ss_pred CCCCCHHHHHHHHHHHCCCHHHHhCC
Confidence 45789999999999999999999753
No 5
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=37.42 E-value=7.8 Score=25.38 Aligned_cols=27 Identities=7% Similarity=0.100 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHhhhCCCccccccccc
Q 023804 249 DGLSKCAILNICTIYKLNPIDVLKYRN 275 (277)
Q Consensus 249 ~~l~~~~i~~ic~~~~l~~~d~~k~~~ 275 (277)
...+-+++..||+.|+++.+|++....
T Consensus 40 ~~ps~~~l~~ia~~l~v~~~~l~~~~~ 66 (68)
T d1b0na2 40 TNPSIQFLEKVSAVLDVSVHTLLDEKH 66 (68)
T ss_dssp SCCCHHHHHHHHHHHTCCHHHHHCCTT
T ss_pred CCCCHHHHHHHHHHHCCcHHHHcCCCC
Confidence 457999999999999999999987654
No 6
>d1j3ea_ d.228.1.1 (A:) Replication modulator SeqA, C-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=36.11 E-value=19 Score=27.26 Aligned_cols=35 Identities=14% Similarity=0.411 Sum_probs=27.4
Q ss_pred cCCCCc-cccCCchh------HHHHHhhCCCCCCCCCHHHHHHHHhh
Q 023804 223 NLQGVP-SILVPSGE------LEELIHSGGKTDDGLSKCAILNICTI 262 (277)
Q Consensus 223 ~~~~~~-~~~~~s~~------l~~~~~~~~~~~~~l~~~~i~~ic~~ 262 (277)
++-.+| |+..+.-- |+++++ .-|.+.+.|+.||.+
T Consensus 73 ~Ip~TpfWViTN~NT~rKr~ml~~vm~-----~mg~~~~~ie~v~~~ 114 (115)
T d1j3ea_ 73 HVPGTPYWVITNTNTGRKCSMIEHIMQ-----SMQFPAELIEKVCGT 114 (115)
T ss_dssp ECTTSSCEECCCSCHHHHHHHHHHHHH-----HTTCCHHHHHHHHTT
T ss_pred cCCCCCeEEEecCChHHHHHHHHHHHH-----HcCCCHHHHHHHHcc
Confidence 667788 88776533 577777 678999999999974
No 7
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}
Probab=30.85 E-value=12 Score=26.03 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=17.6
Q ss_pred CCCCCHHHHHHHHhhhCCC
Q 023804 248 DDGLSKCAILNICTIYKLN 266 (277)
Q Consensus 248 ~~~l~~~~i~~ic~~~~l~ 266 (277)
.-++|+.||.++|+++|.+
T Consensus 45 ~~~vS~sTi~Rf~kklG~~ 63 (83)
T d2o3fa1 45 LANSSDAAVIRLCKSLGLK 63 (83)
T ss_dssp HTTCCHHHHHHHHHHTTCS
T ss_pred HHCCCHHHHHHHHHHhCCC
Confidence 5679999999999999998
No 8
>d1fi6a_ a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.41 E-value=11 Score=26.19 Aligned_cols=23 Identities=17% Similarity=0.083 Sum_probs=13.1
Q ss_pred CCCHHHHHHHHhhhCCCcccccc
Q 023804 250 GLSKCAILNICTIYKLNPIDVLK 272 (277)
Q Consensus 250 ~l~~~~i~~ic~~~~l~~~d~~k 272 (277)
-|+.+.+..+++.++|+..+|-+
T Consensus 25 ~i~~~e~~~~l~~~~l~~~~l~~ 47 (92)
T d1fi6a_ 25 FIPGSAAKEFFTKSKLPILELSH 47 (92)
T ss_dssp EEEHHHHHHHHHHHSSCHHHHHH
T ss_pred chhHHHHHHHHHHccCCHHHHHH
Confidence 36666666666666666555443
No 9
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]}
Probab=28.29 E-value=15 Score=24.39 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHHHhhhCCCccccccc
Q 023804 248 DDGLSKCAILNICTIYKLNPIDVLKY 273 (277)
Q Consensus 248 ~~~l~~~~i~~ic~~~~l~~~d~~k~ 273 (277)
.-..+-+++..||+.||++..+++..
T Consensus 47 ~~~p~~~~l~~ia~~l~v~~~~l~~~ 72 (77)
T d2b5aa1 47 DRNISLINIHKICAALDIPASTFFRK 72 (77)
T ss_dssp CSCCBHHHHHHHHHHTTCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCHHHHhcc
Confidence 55699999999999999999888653
No 10
>d2ofya1 a.35.1.3 (A:3-84) Putative transcriptional regulator RHA1_ro04071 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=28.27 E-value=11 Score=26.16 Aligned_cols=26 Identities=15% Similarity=0.074 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHhhhCCCcccccccc
Q 023804 249 DGLSKCAILNICTIYKLNPIDVLKYR 274 (277)
Q Consensus 249 ~~l~~~~i~~ic~~~~l~~~d~~k~~ 274 (277)
...+-+++..||+.||++-+||+.-.
T Consensus 51 ~~ps~~tl~kia~~L~v~~~~Ll~~~ 76 (82)
T d2ofya1 51 ATPAFFTIAAVARVLDLSLDDVAAVV 76 (82)
T ss_dssp SSCBHHHHHHHHHHTTCCHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHCCCHHHHHhhc
Confidence 34799999999999999999998643
No 11
>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.06 E-value=12 Score=26.01 Aligned_cols=17 Identities=18% Similarity=0.374 Sum_probs=8.4
Q ss_pred CCCHHHHHHHHhhhCCC
Q 023804 250 GLSKCAILNICTIYKLN 266 (277)
Q Consensus 250 ~l~~~~i~~ic~~~~l~ 266 (277)
+|+.+.+..|.+.+|.|
T Consensus 40 ~l~~~~l~~i~~~~D~d 56 (95)
T d1c07a_ 40 GLPSTLLAHIWSLCDTK 56 (95)
T ss_dssp TCCHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 34445555555555544
No 12
>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}
Probab=27.58 E-value=22 Score=23.09 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.7
Q ss_pred CCCCCHHHHHHHHhhhCCCcccc
Q 023804 248 DDGLSKCAILNICTIYKLNPIDV 270 (277)
Q Consensus 248 ~~~l~~~~i~~ic~~~~l~~~d~ 270 (277)
.-.++-+++..||+.||++.+|+
T Consensus 46 ~~~p~~~~l~~ia~~l~v~~~~l 68 (69)
T d1y7ya1 46 QRNVSLVNILKLATALDIEPREL 68 (69)
T ss_dssp CSCCBHHHHHHHHHHTTSCGGGG
T ss_pred CCCCCHHHHHHHHHHhCcCHHHH
Confidence 55699999999999999999886
No 13
>d1lmb3_ a.35.1.2 (3:) lambda C1 repressor, DNA-binding domain {Bacteriophage lambda [TaxId: 10710]}
Probab=27.29 E-value=21 Score=24.53 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHhhhCCCccccc
Q 023804 248 DDGLSKCAILNICTIYKLNPIDVL 271 (277)
Q Consensus 248 ~~~l~~~~i~~ic~~~~l~~~d~~ 271 (277)
...+|-+++..||+.|+++.+|+.
T Consensus 49 ~~~~s~~~l~~ia~~l~v~~~~~~ 72 (87)
T d1lmb3_ 49 INALNAYNAALLAKILKVSVEEFS 72 (87)
T ss_dssp SSCCCHHHHHHHHHHHTSCGGGTC
T ss_pred cCCCcHHHHHHHHHHHCCCHHHHC
Confidence 667999999999999999998875
No 14
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=26.87 E-value=19 Score=24.91 Aligned_cols=37 Identities=8% Similarity=0.023 Sum_probs=25.3
Q ss_pred hhHHHHHhhCCCCCCCCCHHHHHHHHhhhCCCccccc
Q 023804 235 GELEELIHSGGKTDDGLSKCAILNICTIYKLNPIDVL 271 (277)
Q Consensus 235 ~~l~~~~~~~~~~~~~l~~~~i~~ic~~~~l~~~d~~ 271 (277)
+.|+.+.+...-.+.-.|.+.+++||+..||++..|-
T Consensus 30 ~~L~~~fe~~~~~~~~p~~~~~~~la~~~gl~~~~i~ 66 (80)
T d1wh7a_ 30 EKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLK 66 (80)
T ss_dssp HHHHHHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHhcccccCcCHHHHHHHHHHHCCCHHHee
Confidence 3355545533222456789999999999999976664
No 15
>d1iq3a_ a.39.1.6 (A:) Pob1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.42 E-value=15 Score=26.48 Aligned_cols=50 Identities=14% Similarity=-0.015 Sum_probs=34.4
Q ss_pred CCCccccCCchh--HHHHHhhCCCC-CCCCCHHHHHHHHhhhCCCcccccccc
Q 023804 225 QGVPSILVPSGE--LEELIHSGGKT-DDGLSKCAILNICTIYKLNPIDVLKYR 274 (277)
Q Consensus 225 ~~~~~~~~~s~~--l~~~~~~~~~~-~~~l~~~~i~~ic~~~~l~~~d~~k~~ 274 (277)
...||.+.+++. .+++...-|.+ +.-|+.+.+..+..+.+|+..+|-+..
T Consensus 10 ~~~~~~lt~ee~~~y~~lF~~~D~d~~G~Is~~e~~~~l~~s~L~~~~L~~Iw 62 (110)
T d1iq3a_ 10 PDEPWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIW 62 (110)
T ss_dssp CCSSCCCSSSSHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSSCSSCCHHHHH
T ss_pred CCCCCccCHHHHHHHHHHHHHhCCCcccchhHHHHHHHHHhhccchHHHHHHH
Confidence 346799999877 35555444432 444888888888888888877765443
No 16
>d1y7ma2 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=25.80 E-value=10 Score=23.84 Aligned_cols=23 Identities=9% Similarity=0.195 Sum_probs=19.5
Q ss_pred HHHHHHHHhhhCCCccccccccc
Q 023804 253 KCAILNICTIYKLNPIDVLKYRN 275 (277)
Q Consensus 253 ~~~i~~ic~~~~l~~~d~~k~~~ 275 (277)
.||+..|++.|+.+.+|++++-.
T Consensus 9 GDTL~~IA~~y~v~~~~i~~~N~ 31 (48)
T d1y7ma2 9 GDTLNSIAADFRISTAALLQANP 31 (48)
T ss_dssp TCCHHHHHHHTTSCCCCCCCTSC
T ss_pred CCCHHHHHHHhCCCHHHHHHHcC
Confidence 46899999999999999887643
Done!