Your job contains 1 sequence.
>023805
MDGFIPSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK
DLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFA
EIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLK
HCATVLFLESSLPNTFNSNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQRSAVPY
TRTSLGKMTESVKNLLCKSQGSQPLNTLLKHSHSLLR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 023805
(277 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2135302 - symbol:AT4G39810 species:3702 "Arabi... 776 1.5e-89 2
TAIR|locus:2160359 - symbol:AT5G07710 species:3702 "Arabi... 690 5.6e-68 1
TAIR|locus:2163208 - symbol:AT5G61390 species:3702 "Arabi... 673 3.6e-66 1
TAIR|locus:2019100 - symbol:AT1G74390 species:3702 "Arabi... 664 3.2e-65 1
TIGR_CMR|CJE_0502 - symbol:CJE_0502 "exonuclease, DNA pol... 146 2.1e-08 1
UNIPROTKB|Q9KPX9 - symbol:VC_2233 "DNA polymerase III, ep... 131 2.0e-06 1
TIGR_CMR|VC_2233 - symbol:VC_2233 "DNA polymerase III, ep... 131 2.0e-06 1
TIGR_CMR|BA_3672 - symbol:BA_3672 "DNA polymerase III, ep... 132 3.0e-06 1
UNIPROTKB|Q10384 - symbol:MT2247 "Uncharacterized protein... 135 4.8e-06 1
TIGR_CMR|CHY_1772 - symbol:CHY_1772 "DNA polymerase III, ... 135 1.3e-05 1
TIGR_CMR|APH_0730 - symbol:APH_0730 "DNA polymerase III, ... 118 6.8e-05 1
>TAIR|locus:2135302 [details] [associations]
symbol:AT4G39810 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
Pfam:PF00929 EMBL:CP002687 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098 IPI:IPI00537236
RefSeq:NP_195691.4 UniGene:At.54662 ProteinModelPortal:F4JJ23
SMR:F4JJ23 EnsemblPlants:AT4G39810.1 GeneID:830140
KEGG:ath:AT4G39810 OMA:AGHNIRR Uniprot:F4JJ23
Length = 255
Score = 776 (278.2 bits), Expect = 1.5e-89, Sum P(2) = 1.5e-89
Identities = 149/206 (72%), Positives = 174/206 (84%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
EIVFFDLET VP +AGQ F +LEFGAIIVCP+KL ELESF+TLI+PKDLS V+++SSR D
Sbjct: 9 EIVFFDLETNVPNKAGQHFHILEFGAIIVCPKKLEELESFTTLIQPKDLSVVSIRSSRSD 68
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GITR V +AP FE+VA+KI +LNGR+WAGHNIRRFDC RIKEAFAEIGK AP P G+I
Sbjct: 69 GITRAKVTNAPSFEDVAEKIHGLLNGRIWAGHNIRRFDCVRIKEAFAEIGKAAPEPSGII 128
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSLP 193
DSLG+L++KFG+RAGNMKMA+LA+YFGLG QKHRSLDDVRMNLEVLKHCATVLFLES+LP
Sbjct: 129 DSLGLLSDKFGKRAGNMKMASLAAYFGLGVQKHRSLDDVRMNLEVLKHCATVLFLESTLP 188
Query: 194 NTFNSNLQSSLTVTTRSRSNGKLPCR 219
N +S + TRSR N ++ R
Sbjct: 189 NHLEGKWHTSSKIMTRSRRNYQIAQR 214
Score = 137 (53.3 bits), Expect = 1.5e-89, Sum P(2) = 1.5e-89
Identities = 28/44 (63%), Positives = 37/44 (84%)
Query: 234 QRSAVPYTRTSLGKMTESVKNLLCKSQGSQPLNTLLKHSHSLLR 277
QR A+PY++ SL KMT++VKNLL K+QG+Q L +L+ HSHSLLR
Sbjct: 213 QR-AMPYSKGSLEKMTQNVKNLLSKAQGNQTLQSLINHSHSLLR 255
>TAIR|locus:2160359 [details] [associations]
symbol:AT5G07710 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
Pfam:PF00929 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003676
GO:GO:0005622 GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
EMBL:AB010070 HOGENOM:HOG000243435 ProtClustDB:CLSN2682233
IPI:IPI00526286 RefSeq:NP_196388.1 UniGene:At.32685
ProteinModelPortal:Q9FLR0 SMR:Q9FLR0 EnsemblPlants:AT5G07710.1
GeneID:830664 KEGG:ath:AT5G07710 TAIR:At5g07710 eggNOG:NOG242463
InParanoid:Q9FLR0 OMA:HIATEIN PhylomeDB:Q9FLR0
Genevestigator:Q9FLR0 Uniprot:Q9FLR0
Length = 468
Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
Identities = 139/234 (59%), Positives = 173/234 (73%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
+EI FFD+ETTVP+R GQRF +LEFG+I+VCP+KL EL S++TL++P DLS ++ S RC
Sbjct: 7 SEIAFFDVETTVPKR-GQRFAILEFGSILVCPKKLTELRSYTTLVQPADLSLISSLSVRC 65
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
+GI R+ V AP F ++AD ++ IL+GR+WAGHNI RFDCARI+EAFAEIG+ P P G
Sbjct: 66 NGIKRDDVVLAPLFADIADTVYDILHGRIWAGHNILRFDCARIREAFAEIGRQPPEPKGA 125
Query: 133 IDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSL 192
IDSLG+LT+KFGRRAG+MKMATLA YFGLG Q HRSLDDVRMNLEVLK+CATVLFLESSL
Sbjct: 126 IDSLGLLTQKFGRRAGDMKMATLARYFGLGNQTHRSLDDVRMNLEVLKYCATVLFLESSL 185
Query: 193 PNTFNSNLQSSLTVTTRSRSNGKLPCRE-ETSRKSPPISLGYQRSAVPYTRTSL 245
P N S T+++R R + TS + P IS P+ + L
Sbjct: 186 PYAHVDNSVSPETISSRRRIDASREGNTVTTSVRLPSISENSAAQPDPFNMSVL 239
>TAIR|locus:2163208 [details] [associations]
symbol:AT5G61390 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
Pfam:PF00929 EMBL:CP002688 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098 EMBL:BT026378
IPI:IPI00535115 RefSeq:NP_200947.3 UniGene:At.29105
ProteinModelPortal:Q0V842 PRIDE:Q0V842 EnsemblPlants:AT5G61390.1
GeneID:836260 KEGG:ath:AT5G61390 TAIR:At5g61390 eggNOG:NOG265891
HOGENOM:HOG000243435 InParanoid:Q0V842 OMA:YAILEFG PhylomeDB:Q0V842
ProtClustDB:CLSN2682233 Genevestigator:Q0V842 Uniprot:Q0V842
Length = 487
Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
Identities = 131/227 (57%), Positives = 174/227 (76%)
Query: 1 MDGFIPSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK 60
M G P++ +EI FFD+ETT+P R GQ + +LEFG+I+VCP+KLVEL+++S L++P
Sbjct: 4 MVGLTPAE--DRSEIAFFDVETTIPFRVGQGYAILEFGSILVCPKKLVELKNYSVLVRPA 61
Query: 61 DLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFA 120
+L+ + +S +C+GI RE VESA F ++AD ++ IL+GR+WAGHNI +FDC RI+EAFA
Sbjct: 62 NLNLITPRSVKCNGIKREDVESALTFADIADTVYDILHGRIWAGHNILKFDCPRIREAFA 121
Query: 121 EIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLK 180
EIG+ P P G IDSL +LT++FGRRAG+MKMATLA+YFGLG Q HRSLDDVRMN EVLK
Sbjct: 122 EIGRDPPEPKGTIDSLALLTQRFGRRAGDMKMATLATYFGLGNQTHRSLDDVRMNFEVLK 181
Query: 181 HCATVLFLESSLPNTFNSNLQSSLTVTTRSRSNGKLPCREETSRKSP 227
+CATVLFLESSLP+ +++S+T TT S+ R T +KSP
Sbjct: 182 YCATVLFLESSLPDEL---IENSVTTTTPETSSR----RRRTIKKSP 221
>TAIR|locus:2019100 [details] [associations]
symbol:AT1G74390 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
Pfam:PF00929 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0016740
GO:GO:0003676 GO:GO:0005622 GO:GO:0004527 InterPro:IPR013520
SUPFAM:SSF53098 EMBL:AC011765 HOGENOM:HOG000243435 EMBL:AY099717
EMBL:BT000288 IPI:IPI00527477 PIR:F96772 RefSeq:NP_177579.1
UniGene:At.34885 ProteinModelPortal:Q9CA74 SMR:Q9CA74 PRIDE:Q9CA74
EnsemblPlants:AT1G74390.1 GeneID:843780 KEGG:ath:AT1G74390
TAIR:At1g74390 eggNOG:NOG293656 OMA:TECSESD PhylomeDB:Q9CA74
ProtClustDB:CLSN2914563 ArrayExpress:Q9CA74 Genevestigator:Q9CA74
Uniprot:Q9CA74
Length = 506
Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
Identities = 133/220 (60%), Positives = 166/220 (75%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
+EI FFDLET VP ++G+ F +LEFGAI+VCPR+L EL S+STL++P DLS ++ + R
Sbjct: 11 SEIAFFDLETAVPTKSGEPFAILEFGAILVCPRRLEELYSYSTLVRPTDLSLISTLTKRR 70
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
GITR+ V SA F E+ADK++ IL+GR+WAGHNI RFDC RI+EAFAEIG P P
Sbjct: 71 SGITRDGVLSAHTFSEIADKVYDILHGRIWAGHNIIRFDCVRIREAFAEIGLSPPEPKAT 130
Query: 133 IDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSL 192
IDSL +L++KFG+RAG+MKMA+LA+YFGLG Q HRSLDDVRMNLEV+K+CATVLFLESS+
Sbjct: 131 IDSLSLLSQKFGKRAGDMKMASLATYFGLGDQAHRSLDDVRMNLEVVKYCATVLFLESSV 190
Query: 193 PNTFNSNLQSSLTVTTRSRSNGKLPC---REE-TSRKSPP 228
P+ S + R+RSNGKL RE TS S P
Sbjct: 191 PDILTDMSWFSPRKSPRTRSNGKLVANGVRESSTSSSSSP 230
>TIGR_CMR|CJE_0502 [details] [associations]
symbol:CJE_0502 "exonuclease, DNA polymerase III, epsilon
subunit family" species:195099 "Campylobacter jejuni RM1221"
[GO:0004527 "exonuclease activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009360 "DNA polymerase III complex"
evidence=ISS] InterPro:IPR006054 InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0003677
GO:GO:0006260 GO:GO:0005622 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0004527 eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
GO:GO:0003887 KO:K02342 TIGRFAMs:TIGR00573 HOGENOM:HOG000258615
RefSeq:YP_178520.1 ProteinModelPortal:Q5HW15 STRING:Q5HW15
GeneID:3231263 KEGG:cjr:CJE0502 PATRIC:20042716 OMA:ARLKHQD
ProtClustDB:PRK08517 BioCyc:CJEJ195099:GJC0-512-MONOMER
Uniprot:Q5HW15
Length = 233
Score = 146 (56.5 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 46/167 (27%), Positives = 78/167 (46%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+E+T G+ +LE GA+ + K E+ F + +K K++ + GIT E
Sbjct: 53 DIESTGGVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPE---NITELTGITYE 104
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
VE+AP +V L ++ HN+R FD + I +A E G G++ + +
Sbjct: 105 MVENAPSLTKVLSDFRLFLKDSIFVAHNVR-FDYSFISKALNECG------FGILLNRRI 157
Query: 139 LTEKFGR---RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
T +F + + K+ L + G+ HR+LDD E+ K+C
Sbjct: 158 CTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEIFKYC 204
>UNIPROTKB|Q9KPX9 [details] [associations]
symbol:VC_2233 "DNA polymerase III, epsilon subunit"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR006054
InterPro:IPR006055 InterPro:IPR006309 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0003677 GO:GO:0006260
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0004527
InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0003887 GO:GO:0009360
KO:K02342 ProtClustDB:PRK05711 TIGRFAMs:TIGR00573
TIGRFAMs:TIGR01406 OMA:ILAREKH HSSP:P03007 PIR:F82101
RefSeq:NP_231864.1 ProteinModelPortal:Q9KPX9 SMR:Q9KPX9
DNASU:2613155 GeneID:2613155 KEGG:vch:VC2233 PATRIC:20083511
Uniprot:Q9KPX9
Length = 247
Score = 131 (51.2 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 55/212 (25%), Positives = 92/212 (43%)
Query: 7 SQAAGTAEIVFFDLETTVPRRAGQRFW----VLEFGAIIVCPRKLVELESFSTLIKPKDL 62
S A IV D ETT R G + ++E GA+ + RKL F +KP D
Sbjct: 4 SNNAEYQRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTG-RHFHVYLKP-DR 61
Query: 63 SAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAE- 121
+ L++ GIT E ++ PE+++V ++ + G HN FD + FA+
Sbjct: 62 D-IQLEAIEVHGITDEFLKDKPEYKDVHEEFVDFIKGAELVAHNAP-FDVGFMDYEFAKL 119
Query: 122 ---IGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEV 178
IGK + + D+L + F + N+ + L +G+ HR+L ++ E+
Sbjct: 120 GGAIGKTSDF-CKVTDTLAMAKRIFPGKRNNLDI--LCERYGI-DNSHRTLHGALLDAEI 175
Query: 179 LKHCATVLFLESSLPNTFNSNLQSSLTVTTRS 210
L +L F+S Q+S ++ S
Sbjct: 176 LAD-VYLLMTGGQTSLQFSSVTQNSGELSAES 206
>TIGR_CMR|VC_2233 [details] [associations]
symbol:VC_2233 "DNA polymerase III, epsilon subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR006054 InterPro:IPR006055
InterPro:IPR006309 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0003677 GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0009360 KO:K02342 ProtClustDB:PRK05711 TIGRFAMs:TIGR00573
TIGRFAMs:TIGR01406 OMA:ILAREKH HSSP:P03007 PIR:F82101
RefSeq:NP_231864.1 ProteinModelPortal:Q9KPX9 SMR:Q9KPX9
DNASU:2613155 GeneID:2613155 KEGG:vch:VC2233 PATRIC:20083511
Uniprot:Q9KPX9
Length = 247
Score = 131 (51.2 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 55/212 (25%), Positives = 92/212 (43%)
Query: 7 SQAAGTAEIVFFDLETTVPRRAGQRFW----VLEFGAIIVCPRKLVELESFSTLIKPKDL 62
S A IV D ETT R G + ++E GA+ + RKL F +KP D
Sbjct: 4 SNNAEYQRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTG-RHFHVYLKP-DR 61
Query: 63 SAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAE- 121
+ L++ GIT E ++ PE+++V ++ + G HN FD + FA+
Sbjct: 62 D-IQLEAIEVHGITDEFLKDKPEYKDVHEEFVDFIKGAELVAHNAP-FDVGFMDYEFAKL 119
Query: 122 ---IGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEV 178
IGK + + D+L + F + N+ + L +G+ HR+L ++ E+
Sbjct: 120 GGAIGKTSDF-CKVTDTLAMAKRIFPGKRNNLDI--LCERYGI-DNSHRTLHGALLDAEI 175
Query: 179 LKHCATVLFLESSLPNTFNSNLQSSLTVTTRS 210
L +L F+S Q+S ++ S
Sbjct: 176 LAD-VYLLMTGGQTSLQFSSVTQNSGELSAES 206
>TIGR_CMR|BA_3672 [details] [associations]
symbol:BA_3672 "DNA polymerase III, epsilon subunit,
putative" species:198094 "Bacillus anthracis str. Ames" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR006054 InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0005622 GO:GO:0004527 InterPro:IPR013520
SUPFAM:SSF53098 GO:GO:0003887 KO:K02342 TIGRFAMs:TIGR00573
HSSP:P03007 RefSeq:NP_845935.1 RefSeq:YP_020306.1
RefSeq:YP_029660.1 ProteinModelPortal:Q81Y85 DNASU:1089228
EnsemblBacteria:EBBACT00000011122 EnsemblBacteria:EBBACT00000018521
EnsemblBacteria:EBBACT00000024461 GeneID:1089228 GeneID:2815455
GeneID:2848298 KEGG:ban:BA_3672 KEGG:bar:GBAA_3672 KEGG:bat:BAS3404
HOGENOM:HOG000095225 OMA:KKYVLTE ProtClustDB:PRK06807
BioCyc:BANT260799:GJAJ-3466-MONOMER
BioCyc:BANT261594:GJ7F-3577-MONOMER Uniprot:Q81Y85
Length = 315
Score = 132 (51.5 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 46/172 (26%), Positives = 74/172 (43%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + PK + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPK--RPIPDRIMSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNAS-FDMRFLKSNVNMLGLPEPKNK-VI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA++
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASI 171
>UNIPROTKB|Q10384 [details] [associations]
symbol:MT2247 "Uncharacterized protein Rv2191/MT2247"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR006054
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
InterPro:IPR000305 Pfam:PF00929 Pfam:PF01541 GO:GO:0005829
GO:GO:0005886 GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 GO:GO:0006260 EMBL:BX842579
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098 eggNOG:COG0322
SMART:SM00465 SUPFAM:SSF82771 PROSITE:PS50164 GO:GO:0003887
KO:K02342 TIGRFAMs:TIGR00573 PIR:H70783 RefSeq:NP_216707.1
RefSeq:NP_336719.1 RefSeq:YP_006515611.1 ProteinModelPortal:Q10384
SMR:Q10384 EnsemblBacteria:EBMYCT00000000128
EnsemblBacteria:EBMYCT00000072423 GeneID:13318880 GeneID:887265
GeneID:924179 KEGG:mtc:MT2247 KEGG:mtu:Rv2191 KEGG:mtv:RVBD_2191
PATRIC:18126696 TubercuList:Rv2191 HOGENOM:HOG000021021 OMA:PYNRRSR
ProtClustDB:PRK07883 Uniprot:Q10384
Length = 645
Score = 135 (52.6 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 49/170 (28%), Positives = 75/170 (44%)
Query: 16 VFFDLETTVPRRAGQRFW----VLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
V DLETT R G + E GA+ VC + L F+TL+ P+ ++ + R
Sbjct: 44 VVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAV--LGEFATLVNPQH--SIPPQIVR 99
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GIT V +AP + V F V HN FD ++ A P P
Sbjct: 100 LTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNAG-FDIGFLRAAARRCDITWPQPQ- 157
Query: 132 MIDSLGVLTEKFGR-RAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVL 179
++ ++ + R A ++++A LA F + HR+LDD R ++VL
Sbjct: 158 VLCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVL 207
>TIGR_CMR|CHY_1772 [details] [associations]
symbol:CHY_1772 "DNA polymerase III, alpha subunit,
Gram-positive type" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0009360 "DNA polymerase III complex" evidence=ISS]
InterPro:IPR003141 InterPro:IPR004013 InterPro:IPR004365
InterPro:IPR006054 InterPro:IPR006055 InterPro:IPR006308
InterPro:IPR011708 InterPro:IPR012337 Pfam:PF01336 Pfam:PF02811
Pfam:PF07733 SMART:SM00479 SMART:SM00481 Pfam:PF00929 GO:GO:0005737
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006261
GO:GO:0090305 InterPro:IPR013520 SUPFAM:SSF53098 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0008408 GO:GO:0003887
TIGRFAMs:TIGR00573 eggNOG:COG2176 KO:K03763 OMA:IYGMEAN
HAMAP:MF_00356 TIGRFAMs:TIGR01405 RefSeq:YP_360592.1
ProteinModelPortal:Q3AB92 STRING:Q3AB92 GeneID:3727188
KEGG:chy:CHY_1772 PATRIC:21276655 HOGENOM:HOG000058064
BioCyc:CHYD246194:GJCN-1771-MONOMER InterPro:IPR024754 Pfam:PF11490
Uniprot:Q3AB92
Length = 1407
Score = 135 (52.6 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 48/175 (27%), Positives = 80/175 (45%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
IV FD ET+ + QR ++E GA+ + ++ E +FS LI+P+ ++ K S G
Sbjct: 394 IVAFDFETS--GLSSQRDEIIEIGAVKIFDGEIKE--TFSVLIRPQ--KPISAKISELTG 447
Query: 75 ITREAVESAP-EFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
IT + +E +F E +K +G + HN FD +++A +G V +
Sbjct: 448 ITNDLLEKEGLDFGEAIEKFLRFCDGSILLAHNAA-FDYGFLRQALKRLGHERKFSV--V 504
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHCATVLF 187
D+L ++ F N K+ T+ + + HR+L D EV LF
Sbjct: 505 DNLALVRILFPELK-NHKLKTITEHLEVSLNNHHRALADSYALAEVFLKLLPRLF 558
>TIGR_CMR|APH_0730 [details] [associations]
symbol:APH_0730 "DNA polymerase III, epsilon subunit"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0004527
"exonuclease activity" evidence=ISS] [GO:0009360 "DNA polymerase
III complex" evidence=ISS] InterPro:IPR006054 InterPro:IPR006055
InterPro:IPR006309 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0004527 eggNOG:COG0847
InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0003887
HOGENOM:HOG000258616 KO:K02342 TIGRFAMs:TIGR00573
TIGRFAMs:TIGR01406 OMA:IRVVQEK RefSeq:YP_505310.1
ProteinModelPortal:Q2GJZ1 STRING:Q2GJZ1 GeneID:3931235
KEGG:aph:APH_0730 PATRIC:20950150 ProtClustDB:CLSK2463724
BioCyc:APHA212042:GHPM-747-MONOMER Uniprot:Q2GJZ1
Length = 244
Score = 118 (46.6 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 45/166 (27%), Positives = 74/166 (44%)
Query: 14 EIVFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKP-KDLSAVALKSSR 71
EIV D ETT + G R ++E G + + + F I P +D+S A +R
Sbjct: 5 EIVL-DTETTGLDADGGDR--IIEIGCVELVDYVMTG-RVFHKYIDPERDISVAA---TR 57
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GITRE++ P+F EVAD++ L HN R FD ++ + +
Sbjct: 58 VHGITRESLIGMPKFAEVADELLDFLQDSALVIHNAR-FDMRFLEVEIERLSNKRAITNT 116
Query: 132 MIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK---HRSLDDVRM 174
++D+L + +KF ++ L F + Q+ H +L D +
Sbjct: 117 IVDTLEMARKKFPGMPASLD--ALCKRFNISTQERKFHGALKDATL 160
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.133 0.386 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 277 277 0.00080 115 3 11 22 0.48 33
33 0.41 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 11
No. of states in DFA: 597 (63 KB)
Total size of DFA: 179 KB (2104 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.00u 0.07s 24.07t Elapsed: 00:00:01
Total cpu time: 24.00u 0.07s 24.07t Elapsed: 00:00:01
Start: Tue May 21 00:52:26 2013 End: Tue May 21 00:52:27 2013