BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023805
(277 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|296082445|emb|CBI21450.3| unnamed protein product [Vitis vinifera]
Length = 303
Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust.
Identities = 222/304 (73%), Positives = 237/304 (77%), Gaps = 28/304 (9%)
Query: 1 MDGFIPSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK 60
MD S AEIVFFDLETTVP RAGQRFWVLEFGAI+VCPRKLVELES+STLI+P
Sbjct: 1 MDSSDDSSQERAAEIVFFDLETTVPNRAGQRFWVLEFGAIVVCPRKLVELESYSTLIRPG 60
Query: 61 DLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFA 120
DLSAVAL+S R DGITRE V AP FEEVAD+IFSILNGRVWAGHNI+RFDC RIKEAFA
Sbjct: 61 DLSAVALRSGRSDGITREVVAGAPGFEEVADQIFSILNGRVWAGHNIQRFDCVRIKEAFA 120
Query: 121 EIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLK 180
EIG+ APVPVGMIDSLGVLTEKFGRRAGNMKMATLA+YFGLGQQKHRSLDDVRMNLEVLK
Sbjct: 121 EIGRAAPVPVGMIDSLGVLTEKFGRRAGNMKMATLATYFGLGQQKHRSLDDVRMNLEVLK 180
Query: 181 HCATVLFLESSLPNTFNSNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQRSAVPY 240
HCATVLFLESSLP+ + S T+TTRSRSNGKL CREE+SRKSP SLGYQR AVPY
Sbjct: 181 HCATVLFLESSLPSVLSGKWHDSTTITTRSRSNGKLMCREESSRKSPTTSLGYQR-AVPY 239
Query: 241 TRTSLGK---------------------------MTESVKNLLCKSQGSQPLNTLLKHSH 273
R LGK MTE VKNLLCK++ LN +LKHSH
Sbjct: 240 ARGGLGKVSSFPFSLLKNLHGYLSMPLTNNKSKQMTERVKNLLCKAREKPALNNILKHSH 299
Query: 274 SLLR 277
SLLR
Sbjct: 300 SLLR 303
>gi|356528495|ref|XP_003532838.1| PREDICTED: uncharacterized protein LOC100791906 [Glycine max]
Length = 276
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/264 (79%), Positives = 236/264 (89%), Gaps = 1/264 (0%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
EIVFFDLETTVP++ G+RFWVLEFGAI+V P KL E+ES++TLI+PKDLS V++KSSR D
Sbjct: 14 EIVFFDLETTVPKKGGERFWVLEFGAIVVTPHKLTEIESYTTLIRPKDLSVVSVKSSRSD 73
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GITR+AVE+AP FE+VAD+IFSILNGRVWAGHNI+RFDC RIKEAF +I +PAPVPVG+I
Sbjct: 74 GITRKAVENAPSFEDVADRIFSILNGRVWAGHNIQRFDCVRIKEAFDDINRPAPVPVGII 133
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSLP 193
DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSLP
Sbjct: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSLP 193
Query: 194 NTFNSNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQRSAVPYTRTSLGKMTESVK 253
N +S S +V TRSRSNGK PC+EETSRKSPP +LGYQR+ VPY R SLGK+TESVK
Sbjct: 194 NMLHSKSHGSPSVMTRSRSNGKSPCKEETSRKSPPATLGYQRT-VPYARGSLGKVTESVK 252
Query: 254 NLLCKSQGSQPLNTLLKHSHSLLR 277
LLCK+QG PL LLKHSHSLLR
Sbjct: 253 GLLCKAQGQPPLQQLLKHSHSLLR 276
>gi|356511111|ref|XP_003524273.1| PREDICTED: uncharacterized protein LOC100805245 [Glycine max]
Length = 276
Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/264 (79%), Positives = 234/264 (88%), Gaps = 1/264 (0%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
EIVFFDLETTVP+R G+RFWVLEFGAI+V P KL E+ES++TLI+PKDLS V++KSSR D
Sbjct: 14 EIVFFDLETTVPKRGGERFWVLEFGAIVVTPHKLTEIESYTTLIRPKDLSVVSVKSSRSD 73
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GITR+AVE+AP FE+VAD+IFSILNGRVWAGHNI+RFDC RIKEAF +I + APVPVG+I
Sbjct: 74 GITRKAVENAPSFEDVADRIFSILNGRVWAGHNIQRFDCVRIKEAFNDINRSAPVPVGII 133
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSLP 193
DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSLP
Sbjct: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSLP 193
Query: 194 NTFNSNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQRSAVPYTRTSLGKMTESVK 253
NT +S S +V TRSRS+GK PC+EETSRKSPP S GYQR+ VPY R SLGK+TE VK
Sbjct: 194 NTLHSKWYGSSSVMTRSRSDGKSPCKEETSRKSPPTSYGYQRT-VPYARGSLGKVTERVK 252
Query: 254 NLLCKSQGSQPLNTLLKHSHSLLR 277
LLCK+QG PL LLKHSHSLLR
Sbjct: 253 GLLCKAQGQPPLQHLLKHSHSLLR 276
>gi|357519533|ref|XP_003630055.1| DNA polymerase III polC-type [Medicago truncatula]
gi|355524077|gb|AET04531.1| DNA polymerase III polC-type [Medicago truncatula]
Length = 281
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 202/267 (75%), Positives = 228/267 (85%), Gaps = 4/267 (1%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
EIVFFDLET VP++ GQRFWVLEFGAI+V KL E+ES++TLI+P+DLS +KSSR D
Sbjct: 16 EIVFFDLETNVPKKIGQRFWVLEFGAIVVSAHKLSEIESYTTLIRPEDLSVAPMKSSRSD 75
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GITREAV++AP FE+VA+KIFSILNGRVWAGHNI+RFDC RIKEAF I +PAPVPVG+I
Sbjct: 76 GITREAVKNAPCFEDVAEKIFSILNGRVWAGHNIQRFDCVRIKEAFDGINRPAPVPVGII 135
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSLP 193
DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEV+KHCATVLFLES+LP
Sbjct: 136 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVVKHCATVLFLESTLP 195
Query: 194 NTFN---SNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQRSAVPYTRTSLGKMTE 250
NT + S S ++ TRSR+NGK PCREETSRKSPP S YQR+ VPY R SLGK+ E
Sbjct: 196 NTLHIDKSKWYGSSSIMTRSRTNGKSPCREETSRKSPPASSSYQRT-VPYARGSLGKVAE 254
Query: 251 SVKNLLCKSQGSQPLNTLLKHSHSLLR 277
+K LLCK+QG PL LLKHSHSLLR
Sbjct: 255 RMKGLLCKAQGQPPLQQLLKHSHSLLR 281
>gi|147791948|emb|CAN61478.1| hypothetical protein VITISV_013817 [Vitis vinifera]
Length = 293
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 204/261 (78%), Positives = 219/261 (83%), Gaps = 1/261 (0%)
Query: 1 MDGFIPSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK 60
MD S AEIVFFDLETTVP RAGQRFWVLEFGAI+VCPRKLVELES+STLI+P
Sbjct: 34 MDSSDDSSQERAAEIVFFDLETTVPNRAGQRFWVLEFGAIVVCPRKLVELESYSTLIRPG 93
Query: 61 DLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFA 120
DLSAVAL+S R DGITRE V AP FEEVAD+IFSILNGRVWAGHNI+RFDC RIKEAFA
Sbjct: 94 DLSAVALRSGRSDGITREVVAGAPGFEEVADQIFSILNGRVWAGHNIQRFDCVRIKEAFA 153
Query: 121 EIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLK 180
EIG+ APVPVGMIDSLGVLTEKFGRRAGNMKMATLA+YFGLGQQKHRSLDDVRMNLEVLK
Sbjct: 154 EIGRAAPVPVGMIDSLGVLTEKFGRRAGNMKMATLATYFGLGQQKHRSLDDVRMNLEVLK 213
Query: 181 HCATVLFLESSLPNTFNSNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQRSAVPY 240
HCATVLFLESSLP+ + S T+TTRSRSNGKL CREE+SRKSP SLGYQR AVPY
Sbjct: 214 HCATVLFLESSLPSVLSGKWHDSTTITTRSRSNGKLMCREESSRKSPTTSLGYQR-AVPY 272
Query: 241 TRTSLGKMTESVKNLLCKSQG 261
R LGK++ +LL G
Sbjct: 273 ARGGLGKVSSFPFSLLKNLHG 293
>gi|224083745|ref|XP_002307108.1| predicted protein [Populus trichocarpa]
gi|222856557|gb|EEE94104.1| predicted protein [Populus trichocarpa]
Length = 244
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 194/242 (80%), Positives = 214/242 (88%), Gaps = 1/242 (0%)
Query: 7 SQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVA 66
S T EIVFFDLETTVP +AGQRFWVLEFGAIIVCPRKLVEL+S+STLI+P+DLSAVA
Sbjct: 4 SSPVSTPEIVFFDLETTVPNKAGQRFWVLEFGAIIVCPRKLVELDSYSTLIRPEDLSAVA 63
Query: 67 LKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPA 126
LKS RCDGITREAV +AP FEEVADKIF+ILNGR+WAGHNI+RFDC RIKEAFAEIG+PA
Sbjct: 64 LKSGRCDGITREAVANAPAFEEVADKIFTILNGRIWAGHNIQRFDCVRIKEAFAEIGRPA 123
Query: 127 PVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVL 186
P+PVGM DSLGVLTEKFGRRAGNMKMATLA+YFGLGQQKHRSL+DVRMNLEVLKHCA VL
Sbjct: 124 PMPVGMFDSLGVLTEKFGRRAGNMKMATLATYFGLGQQKHRSLEDVRMNLEVLKHCAAVL 183
Query: 187 FLESSLPNTFNSNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQRSAVPYTRTSLG 246
F+ESSLP+ N + T+ TRSRSNGKL CREE RKSPP +LGYQR AVPYTR LG
Sbjct: 184 FVESSLPSVMNGKWHNPSTMVTRSRSNGKLVCREENCRKSPPTTLGYQR-AVPYTRGRLG 242
Query: 247 KM 248
++
Sbjct: 243 EV 244
>gi|449451459|ref|XP_004143479.1| PREDICTED: DNA polymerase III PolC-type-like [Cucumis sativus]
gi|449504833|ref|XP_004162307.1| PREDICTED: DNA polymerase III PolC-type-like [Cucumis sativus]
Length = 269
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 201/267 (75%), Positives = 222/267 (83%), Gaps = 11/267 (4%)
Query: 11 GTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
G AEIVFFDLETTVP+R GQRF VLEFGAI+VCP KLVELESF+TLI+P DLSAVAL+SS
Sbjct: 14 GAAEIVFFDLETTVPKRVGQRFRVLEFGAIVVCPMKLVELESFTTLIRPTDLSAVALRSS 73
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
R DGITR AV +AP FEEVADKIFSILNGR+WAGHNIRRFDC RIKEAFAEIG+PAP+PV
Sbjct: 74 RPDGITRAAVATAPLFEEVADKIFSILNGRIWAGHNIRRFDCVRIKEAFAEIGRPAPIPV 133
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLES 190
GM+DSLGVLT KFG+RAGNMKMA+LASYF LGQQKHRSLDDVRMNLEVLKHCATVLFLES
Sbjct: 134 GMVDSLGVLTNKFGKRAGNMKMASLASYFQLGQQKHRSLDDVRMNLEVLKHCATVLFLES 193
Query: 191 SLPNTFNSNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQRSAVPYTRTSLGKMTE 250
+LP+ ++S T TTRSR+NGKL CREE+SRKSPP S GYQ +VPY+R LG
Sbjct: 194 TLPSILQEKWKTSSTKTTRSRANGKLNCREESSRKSPPSSPGYQLRSVPYSREGLG---- 249
Query: 251 SVKNLLCKSQGSQPLNTLLKHSHSLLR 277
+G Q LN LLKHS LLR
Sbjct: 250 -------IGKGKQHLNVLLKHSRLLLR 269
>gi|224096223|ref|XP_002310581.1| predicted protein [Populus trichocarpa]
gi|222853484|gb|EEE91031.1| predicted protein [Populus trichocarpa]
Length = 231
Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust.
Identities = 185/222 (83%), Positives = 200/222 (90%)
Query: 11 GTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
G+ EIV FDLETTVP RAGQRF VLEFGAI VCPRKLVEL+S+STLI+PKDLSAVALKS
Sbjct: 10 GSPEIVVFDLETTVPNRAGQRFRVLEFGAITVCPRKLVELDSYSTLIRPKDLSAVALKSG 69
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
RCDGITR AV +AP FEEVADKIFSILNGR+WAGHNI+RFDC RIKEAFAEIGKPAPVP
Sbjct: 70 RCDGITRGAVSNAPAFEEVADKIFSILNGRIWAGHNIQRFDCVRIKEAFAEIGKPAPVPA 129
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLES 190
GMIDSLGVLTE+FGRRAGNMKMATLA+YFGLG+QKHRSLDDVRMNLEVLKHCATVLFLES
Sbjct: 130 GMIDSLGVLTERFGRRAGNMKMATLAAYFGLGKQKHRSLDDVRMNLEVLKHCATVLFLES 189
Query: 191 SLPNTFNSNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLG 232
LP+ N+ + T+ TRSRSNGKLPCREE SRKSPP +LG
Sbjct: 190 CLPSVSNAKWCNPSTIVTRSRSNGKLPCREENSRKSPPTTLG 231
>gi|240256240|ref|NP_195691.4| exonuclease/ nucleic acid binding protein [Arabidopsis thaliana]
gi|332661722|gb|AEE87122.1| exonuclease/ nucleic acid binding protein [Arabidopsis thaliana]
Length = 255
Score = 351 bits (900), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 175/264 (66%), Positives = 209/264 (79%), Gaps = 17/264 (6%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
EIVFFDLET VP +AGQ F +LEFGAIIVCP+KL ELESF+TLI+PKDLS V+++SSR D
Sbjct: 9 EIVFFDLETNVPNKAGQHFHILEFGAIIVCPKKLEELESFTTLIQPKDLSVVSIRSSRSD 68
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GITR V +AP FE+VA+KI +LNGR+WAGHNIRRFDC RIKEAFAEIGK AP P G+I
Sbjct: 69 GITRAKVTNAPSFEDVAEKIHGLLNGRIWAGHNIRRFDCVRIKEAFAEIGKAAPEPSGII 128
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSLP 193
DSLG+L++KFG+RAGNMKMA+LA+YFGLG QKHRSLDDVRMNLEVLKHCATVLFLES+LP
Sbjct: 129 DSLGLLSDKFGKRAGNMKMASLAAYFGLGVQKHRSLDDVRMNLEVLKHCATVLFLESTLP 188
Query: 194 NTFNSNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQRSAVPYTRTSLGKMTESVK 253
N +S + TRSR N ++ R A+PY++ SL KMT++VK
Sbjct: 189 NHLEGKWHTSSKIMTRSRRNYQIAQR-----------------AMPYSKGSLEKMTQNVK 231
Query: 254 NLLCKSQGSQPLNTLLKHSHSLLR 277
NLL K+QG+Q L +L+ HSHSLLR
Sbjct: 232 NLLSKAQGNQTLQSLINHSHSLLR 255
>gi|297802094|ref|XP_002868931.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297314767|gb|EFH45190.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 227
Score = 319 bits (817), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 160/236 (67%), Positives = 189/236 (80%), Gaps = 17/236 (7%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
EIVFFDLETTVP + GQ F +LEFGAIIVCPRKL ELESF+TLI+PKDLS V+++SSR D
Sbjct: 9 EIVFFDLETTVPNKVGQYFHILEFGAIIVCPRKLEELESFTTLIQPKDLSVVSIRSSRSD 68
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GITR V +AP FE+VA+KI+ +LNGR+WAGHNIRRFDC RIKEAFAEIGK AP P G+I
Sbjct: 69 GITRAKVTNAPSFEDVAEKIYGLLNGRIWAGHNIRRFDCIRIKEAFAEIGKAAPEPSGII 128
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSLP 193
DSLG+L++KFG+RAGNMKMA+LA+YFGLG QKHRSLDDVRMNLEVLKHCATVLFLES+LP
Sbjct: 129 DSLGLLSDKFGKRAGNMKMASLAAYFGLGVQKHRSLDDVRMNLEVLKHCATVLFLESTLP 188
Query: 194 NTFNSNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQRSAVPYTRTSLGKMT 249
N QSS + TRSRSN ++ R A+PY++ SLGK++
Sbjct: 189 NQLEGKWQSSSKIMTRSRSNYQIAQR-----------------AMPYSKGSLGKVS 227
>gi|225457353|ref|XP_002281793.1| PREDICTED: uncharacterized protein LOC100265514 [Vitis vinifera]
Length = 497
Score = 317 bits (812), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 147/203 (72%), Positives = 174/203 (85%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
+EI FFD+ETTVP R GQ F +LEFGAI+VCPRKLVELES+STL++P DLS V+ S RC
Sbjct: 8 SEIAFFDVETTVPTRVGQGFAILEFGAILVCPRKLVELESYSTLVRPHDLSLVSSLSVRC 67
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
+GITR+AV SAP F ++AD+++ IL+GR+WAGHNI RFDCARI+EAFAEIG+PAP P G
Sbjct: 68 NGITRDAVVSAPNFRDIADRVYDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGS 127
Query: 133 IDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSL 192
IDSL +LT++FGRRAG+MKMATLA+YFGLGQQ HRSLDDVRMNLEVLK+CATVLFLESSL
Sbjct: 128 IDSLALLTQRFGRRAGDMKMATLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSL 187
Query: 193 PNTFNSNLQSSLTVTTRSRSNGK 215
P+ F +N S TRSRSNGK
Sbjct: 188 PDIFTTNSWVSPNAVTRSRSNGK 210
>gi|147817752|emb|CAN66660.1| hypothetical protein VITISV_031720 [Vitis vinifera]
Length = 535
Score = 317 bits (811), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 147/203 (72%), Positives = 174/203 (85%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
+EI FFD+ETTVP R GQ F +LEFGAI+VCPRKLVELES+STL++P DLS V+ S RC
Sbjct: 8 SEIAFFDVETTVPTRVGQGFAILEFGAILVCPRKLVELESYSTLVRPHDLSLVSSLSVRC 67
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
+GITR+AV SAP F ++AD+++ IL+GR+WAGHNI RFDCARI+EAFAEIG+PAP P G
Sbjct: 68 NGITRDAVVSAPNFRDIADRVYDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGS 127
Query: 133 IDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSL 192
IDSL +LT++FGRRAG+MKMATLA+YFGLGQQ HRSLDDVRMNLEVLK+CATVLFLESSL
Sbjct: 128 IDSLALLTQRFGRRAGDMKMATLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSL 187
Query: 193 PNTFNSNLQSSLTVTTRSRSNGK 215
P+ F +N S TRSRSNGK
Sbjct: 188 PDIFTTNSWVSPNAVTRSRSNGK 210
>gi|297733948|emb|CBI15195.3| unnamed protein product [Vitis vinifera]
Length = 447
Score = 317 bits (811), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 147/203 (72%), Positives = 174/203 (85%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
+EI FFD+ETTVP R GQ F +LEFGAI+VCPRKLVELES+STL++P DLS V+ S RC
Sbjct: 8 SEIAFFDVETTVPTRVGQGFAILEFGAILVCPRKLVELESYSTLVRPHDLSLVSSLSVRC 67
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
+GITR+AV SAP F ++AD+++ IL+GR+WAGHNI RFDCARI+EAFAEIG+PAP P G
Sbjct: 68 NGITRDAVVSAPNFRDIADRVYDILHGRIWAGHNILRFDCARIREAFAEIGRPAPEPKGS 127
Query: 133 IDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSL 192
IDSL +LT++FGRRAG+MKMATLA+YFGLGQQ HRSLDDVRMNLEVLK+CATVLFLESSL
Sbjct: 128 IDSLALLTQRFGRRAGDMKMATLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSL 187
Query: 193 PNTFNSNLQSSLTVTTRSRSNGK 215
P+ F +N S TRSRSNGK
Sbjct: 188 PDIFTTNSWVSPNAVTRSRSNGK 210
>gi|3080450|emb|CAA18767.1| hypothetical protein [Arabidopsis thaliana]
gi|7270965|emb|CAB80644.1| hypothetical protein [Arabidopsis thaliana]
Length = 236
Score = 307 bits (787), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 155/235 (65%), Positives = 184/235 (78%), Gaps = 17/235 (7%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
EIVFFDLET VP +AGQ F +LEFGAIIVCP+KL ELESF+TLI+PKDLS V+++SSR D
Sbjct: 9 EIVFFDLETNVPNKAGQHFHILEFGAIIVCPKKLEELESFTTLIQPKDLSVVSIRSSRSD 68
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GITR V +AP FE+VA+KI +LNGR+WAGHNIRRFDC RIKEAFAEIGK AP P G+I
Sbjct: 69 GITRAKVTNAPSFEDVAEKIHGLLNGRIWAGHNIRRFDCVRIKEAFAEIGKAAPEPSGII 128
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSLP 193
DSLG+L++KFG+RAGNMKMA+LA+YFGLG QKHRSLDDVRMNLEVLKHCATVLFLES+LP
Sbjct: 129 DSLGLLSDKFGKRAGNMKMASLAAYFGLGVQKHRSLDDVRMNLEVLKHCATVLFLESTLP 188
Query: 194 NTFNSNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQRSAVPYTRTSLGKM 248
N +S + TRSR N ++ R A+PY++ SL K+
Sbjct: 189 NHLEGKWHTSSKIMTRSRRNYQIAQR-----------------AMPYSKGSLEKV 226
>gi|255576154|ref|XP_002528971.1| exonuclease, putative [Ricinus communis]
gi|223531561|gb|EEF33390.1| exonuclease, putative [Ricinus communis]
Length = 194
Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 138/174 (79%), Positives = 153/174 (87%)
Query: 1 MDGFIPSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK 60
MD F Q ++EIVFFDLETTVP RAG RFWVLEFGAIIVCPRKLVE+ES++TLI+PK
Sbjct: 1 MDTFESYQEGVSSEIVFFDLETTVPNRAGGRFWVLEFGAIIVCPRKLVEIESYTTLIRPK 60
Query: 61 DLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFA 120
DLS VAL+S R GITR AV AP FEEV+DKI+SILNGR+WAGHNIRRFDC RIKEAFA
Sbjct: 61 DLSVVALRSGRSGGITRNAVADAPAFEEVSDKIYSILNGRIWAGHNIRRFDCIRIKEAFA 120
Query: 121 EIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRM 174
E+GK PVPVGMIDSLGVL++KFGRRAGN+KMATLA YFGLGQQKHRSLDDVR+
Sbjct: 121 ELGKDPPVPVGMIDSLGVLSQKFGRRAGNLKMATLADYFGLGQQKHRSLDDVRI 174
>gi|449440810|ref|XP_004138177.1| PREDICTED: uncharacterized protein LOC101203629 [Cucumis sativus]
Length = 471
Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 143/214 (66%), Positives = 172/214 (80%), Gaps = 5/214 (2%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
+EI FFD+ETTVP R GQ+F +LEFGAI+VCP+KLVELES+STL+KP DLS ++ S RC
Sbjct: 8 SEIAFFDVETTVPTRQGQKFSILEFGAILVCPKKLVELESYSTLVKPSDLSLISSLSVRC 67
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
+GITR+AV S+P F ++AD+++ IL+GR+WAGHNI RFDCARI+EAFAEIG PAP P G
Sbjct: 68 NGITRDAVISSPTFAQIADRVYDILHGRIWAGHNILRFDCARIREAFAEIGVPAPEPKGT 127
Query: 133 IDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSL 192
IDSL +LT++FGRRAG+MKMATLASYFG+GQQ HRSLDDVRMNLEVLK+CATVLFLESSL
Sbjct: 128 IDSLALLTQRFGRRAGDMKMATLASYFGIGQQTHRSLDDVRMNLEVLKYCATVLFLESSL 187
Query: 193 PNTFNSNLQSSLTVTTRSRS-----NGKLPCREE 221
P F N S TR R+ G C E+
Sbjct: 188 PEVFPENSWVSPNAVTRRRAAKSSPQGNTICSED 221
>gi|255547339|ref|XP_002514727.1| exonuclease, putative [Ricinus communis]
gi|223546331|gb|EEF47833.1| exonuclease, putative [Ricinus communis]
Length = 501
Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 139/214 (64%), Positives = 166/214 (77%)
Query: 4 FIPSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLS 63
IP +EI FFDLETTVP R GQ F +LEFGAI+VC RKL EL S+STL++P +LS
Sbjct: 1 MIPGPTDERSEIAFFDLETTVPNRPGQGFAILEFGAILVCSRKLEELHSYSTLVRPANLS 60
Query: 64 AVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
++ S RC+GIT +AV AP F E+AD ++ ILNGR+WAGHNI+RFDC RI+EAFAEIG
Sbjct: 61 LISPTSVRCNGITHDAVVLAPTFAEIADIVYEILNGRIWAGHNIQRFDCVRIREAFAEIG 120
Query: 124 KPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCA 183
+ P G+ID+L +LT KFGRRAG+MKMA+LA+YFGLG+Q HRSLDDVRMNLEVLK+CA
Sbjct: 121 RQPPENKGIIDTLALLTHKFGRRAGDMKMASLATYFGLGKQTHRSLDDVRMNLEVLKYCA 180
Query: 184 TVLFLESSLPNTFNSNLQSSLTVTTRSRSNGKLP 217
TVLFLESSLP+ F S TTRSR NGK P
Sbjct: 181 TVLFLESSLPDAFPEKSWVSPNATTRSRKNGKSP 214
>gi|356512002|ref|XP_003524710.1| PREDICTED: uncharacterized protein LOC100788659 [Glycine max]
Length = 501
Score = 290 bits (743), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 135/207 (65%), Positives = 166/207 (80%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
+EIVFFD+ET+VP RAGQ F +LEFGAI+VCPR L EL +STL++P +LS + S RC
Sbjct: 6 SEIVFFDVETSVPTRAGQGFALLEFGAILVCPRTLTELRDYSTLVRPANLSVITPLSERC 65
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
+GI AV +AP F ++A ++ +L+GR+WAGHNI RFDC RI++AFAEI +P P P G
Sbjct: 66 NGINAAAVSAAPTFADIAHLVYDLLHGRIWAGHNIIRFDCVRIRDAFAEINQPPPEPKGT 125
Query: 133 IDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSL 192
IDSL +LT+KFGRRAG+MKMATLA+YFGLG+Q HRSLDDVRMNLEVLK+CATVLFLESSL
Sbjct: 126 IDSLVLLTQKFGRRAGDMKMATLATYFGLGRQTHRSLDDVRMNLEVLKYCATVLFLESSL 185
Query: 193 PNTFNSNLQSSLTVTTRSRSNGKLPCR 219
P+ F +N S TTRSRSNGK P +
Sbjct: 186 PDIFTANSWVSPNATTRSRSNGKSPSQ 212
>gi|242039735|ref|XP_002467262.1| hypothetical protein SORBIDRAFT_01g022250 [Sorghum bicolor]
gi|241921116|gb|EER94260.1| hypothetical protein SORBIDRAFT_01g022250 [Sorghum bicolor]
Length = 505
Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 143/232 (61%), Positives = 179/232 (77%), Gaps = 5/232 (2%)
Query: 11 GTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKD-LSAVALKS 69
G EI FFD+ET+VP+RAGQ + +LEFGAI+VCPR+LVE+ S++TL++P D +SAV+ S
Sbjct: 37 GGPEIAFFDVETSVPQRAGQGYALLEFGAILVCPRRLVEVASYATLVRPADPVSAVSAAS 96
Query: 70 SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVP 129
RC+GITR+AV AP F +VAD ++ +LNGRVWAGHNI RFD ARI+EAF EIG+ P P
Sbjct: 97 VRCNGITRDAVSGAPPFRDVADAVYDLLNGRVWAGHNIVRFDSARIREAFTEIGRSPPQP 156
Query: 130 VGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLE 189
GMID+L +LT++FGRRAG+MKMA+LA+YFGLG+Q+HRSLDDVRMNLEVLK+CATVLFLE
Sbjct: 157 KGMIDTLPLLTQRFGRRAGDMKMASLANYFGLGKQRHRSLDDVRMNLEVLKYCATVLFLE 216
Query: 190 SSLPNTFN-SNLQSSLTVTTRSRSNGKL-PCREETSRKSPPISLGYQRSAVP 239
+SLP NL TTRSR+NG + P + SPP S QR P
Sbjct: 217 ASLPEVLTVENLVER--ATTRSRANGIVSPDLPKPEANSPPDSSKRQRIVSP 266
>gi|226498878|ref|NP_001148000.1| UTP-glucose-P-uridyltransferase homolog [Zea mays]
gi|194706488|gb|ACF87328.1| unknown [Zea mays]
gi|195615060|gb|ACG29360.1| exonuclease [Zea mays]
gi|413934232|gb|AFW68783.1| exonuclease [Zea mays]
Length = 499
Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 143/234 (61%), Positives = 179/234 (76%), Gaps = 5/234 (2%)
Query: 9 AAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKD-LSAVAL 67
A G EI FFD+ET+VP+RAGQ + +LEFGAI+VCPR+LVE+ S++TL++P D SAV+
Sbjct: 29 AEGPTEIAFFDVETSVPQRAGQGYALLEFGAILVCPRRLVEVASYATLVRPADPASAVSA 88
Query: 68 KSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAP 127
S RC+GITR+AV +AP F +VAD ++ +LNGRVWAGHNI RFD ARI+EAF EIG+ P
Sbjct: 89 ASVRCNGITRDAVSAAPPFRDVADAVYDLLNGRVWAGHNIVRFDSARIREAFTEIGRSPP 148
Query: 128 VPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLF 187
P GMID+L +LT++FGRRAG+MKMA+LA+YFGLG+Q+HRSLDDVRMNLEVLK+CATVLF
Sbjct: 149 QPKGMIDTLPLLTQRFGRRAGDMKMASLANYFGLGKQRHRSLDDVRMNLEVLKYCATVLF 208
Query: 188 LESSLPNTFN-SNLQSSLTVTTRSRSNGKL-PCREETSRKSPPISLGYQRSAVP 239
LE+SLP NL TRSR+NG P + SPP S QR+ P
Sbjct: 209 LEASLPEVLTVENLVER--AMTRSRANGTASPDLPKPEANSPPDSSKRQRTVSP 260
>gi|326496743|dbj|BAJ98398.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 485
Score = 286 bits (733), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 133/213 (62%), Positives = 173/213 (81%), Gaps = 2/213 (0%)
Query: 2 DGFIPSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKD 61
+G + AG AEI FFDLET+VP+RAGQ + +LEFGAI+VCPR+LVE+ ++TL++P D
Sbjct: 13 EGSTAAAQAGGAEIAFFDLETSVPQRAGQGYALLEFGAILVCPRRLVEVACYATLVRPAD 72
Query: 62 LSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAE 121
L V+ S RC+GITR+AV +AP F +VADK + +L+GRVWAGHNI RFD RI+EAF E
Sbjct: 73 LGVVSAASMRCNGITRDAVAAAPCFRDVADKAYDLLHGRVWAGHNIVRFDVPRIREAFIE 132
Query: 122 IGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKH 181
IG+P P P GMID+L +LT++FGRRAG+MKMA+LA+YFGLG+QKHRSLDDVRMNLEVLK+
Sbjct: 133 IGRPPPEPKGMIDTLPLLTQRFGRRAGDMKMASLANYFGLGRQKHRSLDDVRMNLEVLKY 192
Query: 182 CATVLFLESSLPNTFNSNLQSSLTVTTRSRSNG 214
CATVLFLE+SLP +++ + TRS+++G
Sbjct: 193 CATVLFLEASLPEVL--IVENLVGTITRSKTDG 223
>gi|110289067|gb|ABG66074.1| exonuclease family protein, putative, expressed [Oryza sativa
Japonica Group]
Length = 267
Score = 283 bits (725), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 133/202 (65%), Positives = 167/202 (82%), Gaps = 3/202 (1%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
EI FFD+ET+VP+RAGQ + +LEFGAI+VCPR+LV + S++TL++P DL V+ S RC+
Sbjct: 29 EIAFFDVETSVPQRAGQGYALLEFGAILVCPRRLVVVGSYATLVRPGDLGVVSAASVRCN 88
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GITR+AV +AP F +VAD ++S+L+GRVWAGHNI RFD ARI+EAFAEIG+P P P GMI
Sbjct: 89 GITRDAVAAAPAFRDVADAVYSVLHGRVWAGHNIVRFDLARIREAFAEIGRPPPEPKGMI 148
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSLP 193
D+L +LT+KFGRRAG+MKMA+LA+YFGLG+Q HRSLDDVRMNLEVLK+CATVLFLE+SLP
Sbjct: 149 DTLPLLTQKFGRRAGDMKMASLANYFGLGRQSHRSLDDVRMNLEVLKYCATVLFLEASLP 208
Query: 194 NTFN-SNLQSSLTVTTRSRSNG 214
NL TRS++NG
Sbjct: 209 GVLTVENLVER--AITRSQANG 228
>gi|15451563|gb|AAK98687.1|AC021893_21 Putative exonuclease [Oryza sativa Japonica Group]
gi|31432001|gb|AAP53700.1| exonuclease family protein, putative, expressed [Oryza sativa
Japonica Group]
Length = 493
Score = 283 bits (724), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 133/202 (65%), Positives = 167/202 (82%), Gaps = 3/202 (1%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
EI FFD+ET+VP+RAGQ + +LEFGAI+VCPR+LV + S++TL++P DL V+ S RC+
Sbjct: 29 EIAFFDVETSVPQRAGQGYALLEFGAILVCPRRLVVVGSYATLVRPGDLGVVSAASVRCN 88
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GITR+AV +AP F +VAD ++S+L+GRVWAGHNI RFD ARI+EAFAEIG+P P P GMI
Sbjct: 89 GITRDAVAAAPAFRDVADAVYSVLHGRVWAGHNIVRFDLARIREAFAEIGRPPPEPKGMI 148
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSLP 193
D+L +LT+KFGRRAG+MKMA+LA+YFGLG+Q HRSLDDVRMNLEVLK+CATVLFLE+SLP
Sbjct: 149 DTLPLLTQKFGRRAGDMKMASLANYFGLGRQSHRSLDDVRMNLEVLKYCATVLFLEASLP 208
Query: 194 NTFN-SNLQSSLTVTTRSRSNG 214
NL TRS++NG
Sbjct: 209 GVLTVENLVER--AITRSQANG 228
>gi|15240840|ref|NP_196388.1| exonuclease family protein [Arabidopsis thaliana]
gi|9759593|dbj|BAB11450.1| exonuclease-like protein [Arabidopsis thaliana]
gi|332003813|gb|AED91196.1| exonuclease family protein [Arabidopsis thaliana]
Length = 468
Score = 283 bits (723), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 139/236 (58%), Positives = 174/236 (73%), Gaps = 13/236 (5%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
+EI FFD+ETTVP+R GQRF +LEFG+I+VCP+KL EL S++TL++P DLS ++ S RC
Sbjct: 7 SEIAFFDVETTVPKR-GQRFAILEFGSILVCPKKLTELRSYTTLVQPADLSLISSLSVRC 65
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
+GI R+ V AP F ++AD ++ IL+GR+WAGHNI RFDCARI+EAFAEIG+ P P G
Sbjct: 66 NGIKRDDVVLAPLFADIADTVYDILHGRIWAGHNILRFDCARIREAFAEIGRQPPEPKGA 125
Query: 133 IDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSL 192
IDSLG+LT+KFGRRAG+MKMATLA YFGLG Q HRSLDDVRMNLEVLK+CATVLFLESSL
Sbjct: 126 IDSLGLLTQKFGRRAGDMKMATLARYFGLGNQTHRSLDDVRMNLEVLKYCATVLFLESSL 185
Query: 193 PNTFNSNLQSSLTVTTRSRSNG-----------KLPCREETSRKSP-PISLGYQRS 236
P N S T+++R R + +LP E S P P ++ R+
Sbjct: 186 PYAHVDNSVSPETISSRRRIDASREGNTVTTSVRLPSISENSAAQPDPFNMSVLRN 241
>gi|356562862|ref|XP_003549687.1| PREDICTED: uncharacterized protein LOC100818863 [Glycine max]
Length = 501
Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 131/203 (64%), Positives = 164/203 (80%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
+EIVFFD+ET+VP R GQ F +LEFGAI+VCP+ L EL ++STL++P +LS ++ S RC
Sbjct: 6 SEIVFFDVETSVPTRTGQGFALLEFGAILVCPKTLTELRNYSTLVRPANLSVISPLSERC 65
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
+GIT AV +AP F ++A ++ +L+GR+WAGHNI RFDC RI++AFAEI +P P P G
Sbjct: 66 NGITAAAVSAAPSFADIAHLVYDLLHGRIWAGHNIIRFDCVRIRDAFAEINQPPPEPKGT 125
Query: 133 IDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSL 192
IDSL +LT+KFGRRAG+MKMATLA+YFGLG+Q HRSLDDVRMNLEVLK+CATVLFLESSL
Sbjct: 126 IDSLVLLTQKFGRRAGDMKMATLATYFGLGRQTHRSLDDVRMNLEVLKYCATVLFLESSL 185
Query: 193 PNTFNSNLQSSLTVTTRSRSNGK 215
P+ F +N S TRSRSN K
Sbjct: 186 PDIFTANSWVSPNSITRSRSNEK 208
>gi|357146112|ref|XP_003573879.1| PREDICTED: uncharacterized protein LOC100834632 [Brachypodium
distachyon]
Length = 492
Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 129/212 (60%), Positives = 170/212 (80%), Gaps = 5/212 (2%)
Query: 5 IPSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSA 64
+P+ AG EI FFD+ET+VP+R GQ + +LEFGAI+VCPR+LVE+ ++TL++P DL
Sbjct: 19 LPAPVAGGPEIAFFDVETSVPQRTGQGYALLEFGAILVCPRRLVEVACYATLVRPNDLGV 78
Query: 65 VALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGK 124
V+ S RC+GITR+AV AP F +VAD ++ +L+GRVWAGHNI RFD RI+EAF EIG+
Sbjct: 79 VSAASVRCNGITRDAVAGAPGFRDVADAVYDVLHGRVWAGHNIVRFDLPRIREAFTEIGR 138
Query: 125 PAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCAT 184
P P G ID+L +LT++FGRRAG+MKMA+LA+YFGLG+QKHRSLDDVRMNL+VLK+CAT
Sbjct: 139 SPPEPKGTIDTLPLLTQRFGRRAGDMKMASLANYFGLGRQKHRSLDDVRMNLDVLKYCAT 198
Query: 185 VLFLESSLPN--TFNSNLQSSLTVTTRSRSNG 214
VLFLE+SLP T + L+ ++ TRS++NG
Sbjct: 199 VLFLEASLPEVLTVENLLERAI---TRSKANG 227
>gi|297610461|ref|NP_001064570.2| Os10g0407500 [Oryza sativa Japonica Group]
gi|255679392|dbj|BAF26484.2| Os10g0407500 [Oryza sativa Japonica Group]
Length = 517
Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 133/206 (64%), Positives = 167/206 (81%), Gaps = 7/206 (3%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
EI FFD+ET+VP+RAGQ + +LEFGAI+VCPR+LV + S++TL++P DL V+ S RC+
Sbjct: 29 EIAFFDVETSVPQRAGQGYALLEFGAILVCPRRLVVVGSYATLVRPGDLGVVSAASVRCN 88
Query: 74 GITREAVESAPEFEEVADKIFSILN----GRVWAGHNIRRFDCARIKEAFAEIGKPAPVP 129
GITR+AV +AP F +VAD ++S+L+ GRVWAGHNI RFD ARI+EAFAEIG+P P P
Sbjct: 89 GITRDAVAAAPAFRDVADAVYSVLHEFSIGRVWAGHNIVRFDLARIREAFAEIGRPPPEP 148
Query: 130 VGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLE 189
GMID+L +LT+KFGRRAG+MKMA+LA+YFGLG+Q HRSLDDVRMNLEVLK+CATVLFLE
Sbjct: 149 KGMIDTLPLLTQKFGRRAGDMKMASLANYFGLGRQSHRSLDDVRMNLEVLKYCATVLFLE 208
Query: 190 SSLPNTFN-SNLQSSLTVTTRSRSNG 214
+SLP NL TRS++NG
Sbjct: 209 ASLPGVLTVENLVER--AITRSQANG 232
>gi|297806807|ref|XP_002871287.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
gi|297317124|gb|EFH47546.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
Length = 468
Score = 276 bits (707), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 137/236 (58%), Positives = 172/236 (72%), Gaps = 13/236 (5%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
+EI FFD+ETTVP R GQRF +LEFG+I+VCP+KL EL S++TL++P DLS ++ S RC
Sbjct: 7 SEIAFFDVETTVPNR-GQRFAILEFGSILVCPKKLTELRSYTTLVQPADLSLISSLSVRC 65
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
+GI R+ V AP F ++AD ++ IL+GR+WAGHNI RFDCARI+EAFAEIG+ P P G
Sbjct: 66 NGIKRDDVVLAPLFADIADTVYDILHGRIWAGHNILRFDCARIREAFAEIGRQPPEPKGA 125
Query: 133 IDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSL 192
IDSLG+LT++FGRRAG+MKMATLA YFGLG Q HRSLDDVRMNLEVLK+CATVLFLESSL
Sbjct: 126 IDSLGLLTQQFGRRAGDMKMATLARYFGLGNQTHRSLDDVRMNLEVLKYCATVLFLESSL 185
Query: 193 PNTFNSNLQSSLTVTTRSRSNG-----------KLPCREETSRKSP-PISLGYQRS 236
P + S T ++R R + +LP E S P P ++ R+
Sbjct: 186 PYAHVDHSVSPGTTSSRRRIDASHEGNTVTTSVRLPSISENSAAQPDPFNMSILRN 241
>gi|42568689|ref|NP_200947.3| exonuclease-like protein [Arabidopsis thaliana]
gi|111074224|gb|ABH04485.1| At5g61390 [Arabidopsis thaliana]
gi|332010078|gb|AED97461.1| exonuclease-like protein [Arabidopsis thaliana]
Length = 487
Score = 276 bits (706), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 132/227 (58%), Positives = 170/227 (74%), Gaps = 9/227 (3%)
Query: 1 MDGFIPSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK 60
M G P A +EI FFD+ETT+P R GQ + +LEFG+I+VCP+KLVEL+++S L++P
Sbjct: 4 MVGLTP--AEDRSEIAFFDVETTIPFRVGQGYAILEFGSILVCPKKLVELKNYSVLVRPA 61
Query: 61 DLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFA 120
+L+ + +S +C+GI RE VESA F ++AD ++ IL+GR+WAGHNI +FDC RI+EAFA
Sbjct: 62 NLNLITPRSVKCNGIKREDVESALTFADIADTVYDILHGRIWAGHNILKFDCPRIREAFA 121
Query: 121 EIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLK 180
EIG+ P P G IDSL +LT++FGRRAG+MKMATLA+YFGLG Q HRSLDDVRMN EVLK
Sbjct: 122 EIGRDPPEPKGTIDSLALLTQRFGRRAGDMKMATLATYFGLGNQTHRSLDDVRMNFEVLK 181
Query: 181 HCATVLFLESSLPNTFNSNLQSSLTVTTRSRSNGKLPCREETSRKSP 227
+CATVLFLESSLP+ N ++ T T SR R T +KSP
Sbjct: 182 YCATVLFLESSLPDELIENSVTTTTPETSSR-------RRRTIKKSP 221
>gi|297797093|ref|XP_002866431.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
gi|297312266|gb|EFH42690.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
Length = 484
Score = 276 bits (705), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 126/199 (63%), Positives = 160/199 (80%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
+EI FFD+ETT+P RAGQ + +LEFG+I+VCP+KLVEL ++S L++P +L+ + +S +C
Sbjct: 11 SEIAFFDVETTIPFRAGQGYAILEFGSILVCPKKLVELRNYSVLVRPANLNLITPRSVKC 70
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
+GI RE VESA F ++AD ++ IL+GR+WAGHNI +FDC RI EAFAEIG+ P P G
Sbjct: 71 NGIKREDVESAATFADIADTVYDILHGRIWAGHNILKFDCPRISEAFAEIGRDPPEPKGT 130
Query: 133 IDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSL 192
IDSL +LT++FGRRAG+MKMATLASYFGLG Q HRSLDDVRMNLEVLK+CATVLFLESSL
Sbjct: 131 IDSLALLTQRFGRRAGDMKMATLASYFGLGNQTHRSLDDVRMNLEVLKYCATVLFLESSL 190
Query: 193 PNTFNSNLQSSLTVTTRSR 211
P+ N ++ T T SR
Sbjct: 191 PDELIENSVTTTTPETSSR 209
>gi|413942456|gb|AFW75105.1| hypothetical protein ZEAMMB73_060834 [Zea mays]
Length = 308
Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 136/219 (62%), Positives = 168/219 (76%), Gaps = 10/219 (4%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
EIVF D+ETT P AG R+W+LEFGAI+VCPRKLVE+ S+ TLI+P DLSAV+ + + D
Sbjct: 8 EIVFLDVETTAPTSAG-RWWLLEFGAILVCPRKLVEVGSYDTLIRPGDLSAVSRRFT--D 64
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
G+ EA+ SAP F++VADKIF IL+GRVWAGHNI+RFDC RI+EAFA+IG+PAP P G+I
Sbjct: 65 GV--EAIASAPPFKDVADKIFGILDGRVWAGHNIQRFDCPRIREAFADIGRPAPEPAGVI 122
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSLP 193
DSL VL +FGRRAG++KMATLA+YFG+G+QKHRSLDD RMNLEVLKHCATVL LESSLP
Sbjct: 123 DSLNVLAAEFGRRAGDLKMATLATYFGIGKQKHRSLDDARMNLEVLKHCATVLLLESSLP 182
Query: 194 NTFNSNLQS-----SLTVTTRSRSNGKLPCREETSRKSP 227
+ QS ++ T R + P + E + P
Sbjct: 183 HVLCGRHQSRQADGAVVTTRRMAAQQTPPPKHEVHQHRP 221
>gi|242086513|ref|XP_002439089.1| hypothetical protein SORBIDRAFT_09g000300 [Sorghum bicolor]
gi|241944374|gb|EES17519.1| hypothetical protein SORBIDRAFT_09g000300 [Sorghum bicolor]
Length = 319
Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 130/193 (67%), Positives = 154/193 (79%), Gaps = 5/193 (2%)
Query: 7 SQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVA 66
+ AA EIVFFD+ETT P AG R+W+LEFGAI+VCPRKLVE+ S+ TLI+P DLS
Sbjct: 3 TTAAAMREIVFFDVETTAPTPAG-RWWLLEFGAILVCPRKLVEVASYDTLIRPGDLSVAV 61
Query: 67 LKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPA 126
K R + EA+ SAP F++VADKIF IL+GRVWAGHNI+RFDC RI+EAFA+IG+PA
Sbjct: 62 TK--RFSDV--EAIASAPPFKDVADKIFEILDGRVWAGHNIQRFDCPRIREAFADIGRPA 117
Query: 127 PVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVL 186
P P G+IDSL VL FGRRAG++KMATLA+YFG+G+QKHRSLDD RMNLEVLKHCATVL
Sbjct: 118 PEPAGVIDSLNVLAADFGRRAGDLKMATLATYFGIGKQKHRSLDDARMNLEVLKHCATVL 177
Query: 187 FLESSLPNTFNSN 199
LESSLP+
Sbjct: 178 LLESSLPHVLGGT 190
>gi|226493850|ref|NP_001151909.1| exonuclease [Zea mays]
gi|195650883|gb|ACG44909.1| exonuclease [Zea mays]
gi|413950294|gb|AFW82943.1| exonuclease [Zea mays]
Length = 302
Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 130/198 (65%), Positives = 158/198 (79%), Gaps = 3/198 (1%)
Query: 14 EIVFFDLETTVPRRAGQ-RFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
EIVFFD+ETT P AG R+W+LEFGAI+VCPRKLVE+ S+ TLI+P DLSAV+ + +
Sbjct: 6 EIVFFDVETTAPSAAGPGRWWLLEFGAILVCPRKLVEVGSYDTLIRPGDLSAVSRRFT-- 63
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
D + + SAP F++VADKIF IL+GRVWAGHNI+RFDC RI+EAFA+IG+PAP PVG+
Sbjct: 64 DDVEAAIMASAPPFKDVADKIFDILDGRVWAGHNIQRFDCPRIREAFADIGRPAPEPVGV 123
Query: 133 IDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSL 192
IDSL VL FGRRAG++KMATLA+YFG+G+QKHR LDD RMNLEVLKHCATVL LESSL
Sbjct: 124 IDSLNVLAAHFGRRAGDLKMATLATYFGIGKQKHRGLDDARMNLEVLKHCATVLLLESSL 183
Query: 193 PNTFNSNLQSSLTVTTRS 210
P+ + VT R+
Sbjct: 184 PDVLCAQQSRRAAVTRRT 201
>gi|15221225|ref|NP_177579.1| polynucleotidyl transferase, ribonuclease H-like protein
[Arabidopsis thaliana]
gi|12324816|gb|AAG52378.1|AC011765_30 putative exonuclease; 20146-18080 [Arabidopsis thaliana]
gi|20466502|gb|AAM20568.1| putative exonuclease [Arabidopsis thaliana]
gi|23198160|gb|AAN15607.1| putative exonuclease [Arabidopsis thaliana]
gi|332197464|gb|AEE35585.1| polynucleotidyl transferase, ribonuclease H-like protein
[Arabidopsis thaliana]
Length = 506
Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 127/204 (62%), Positives = 160/204 (78%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
+EI FFDLET VP ++G+ F +LEFGAI+VCPR+L EL S+STL++P DLS ++ + R
Sbjct: 11 SEIAFFDLETAVPTKSGEPFAILEFGAILVCPRRLEELYSYSTLVRPTDLSLISTLTKRR 70
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
GITR+ V SA F E+ADK++ IL+GR+WAGHNI RFDC RI+EAFAEIG P P
Sbjct: 71 SGITRDGVLSAHTFSEIADKVYDILHGRIWAGHNIIRFDCVRIREAFAEIGLSPPEPKAT 130
Query: 133 IDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSL 192
IDSL +L++KFG+RAG+MKMA+LA+YFGLG Q HRSLDDVRMNLEV+K+CATVLFLESS+
Sbjct: 131 IDSLSLLSQKFGKRAGDMKMASLATYFGLGDQAHRSLDDVRMNLEVVKYCATVLFLESSV 190
Query: 193 PNTFNSNLQSSLTVTTRSRSNGKL 216
P+ S + R+RSNGKL
Sbjct: 191 PDILTDMSWFSPRKSPRTRSNGKL 214
>gi|297842185|ref|XP_002888974.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
gi|297334815|gb|EFH65233.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
Length = 506
Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 125/208 (60%), Positives = 162/208 (77%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
+EI FFDLET VP ++GQ F +LEFGAI+VCPRKLVEL S+STL++P DLS ++ + R
Sbjct: 11 SEIAFFDLETAVPTKSGQPFAILEFGAILVCPRKLVELYSYSTLVQPTDLSLISTLTKRR 70
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
GITR+ V SAP F E+AD+++ IL+GR+WAGHNI+RFDC RI++AFAEIG P P
Sbjct: 71 SGITRDGVLSAPTFSEIADEVYDILHGRIWAGHNIKRFDCVRIRDAFAEIGLCPPEPKAT 130
Query: 133 IDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSL 192
IDSL +L++KFG+RAG+MKMA+LA+YFGLG Q HRSLDDVRMNLEV+K+CATVLFLESS+
Sbjct: 131 IDSLSLLSQKFGKRAGDMKMASLATYFGLGDQAHRSLDDVRMNLEVVKYCATVLFLESSV 190
Query: 193 PNTFNSNLQSSLTVTTRSRSNGKLPCRE 220
P+ S + R+R + + R+
Sbjct: 191 PDILTDMSWFSPRKSPRARRSNEESVRD 218
>gi|9757860|dbj|BAB08494.1| exonuclease-like protein [Arabidopsis thaliana]
Length = 500
Score = 266 bits (680), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 132/243 (54%), Positives = 170/243 (69%), Gaps = 25/243 (10%)
Query: 1 MDGFIPSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK 60
M G P A +EI FFD+ETT+P R GQ + +LEFG+I+VCP+KLVEL+++S L++P
Sbjct: 1 MVGLTP--AEDRSEIAFFDVETTIPFRVGQGYAILEFGSILVCPKKLVELKNYSVLVRPA 58
Query: 61 DLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFA 120
+L+ + +S +C+GI RE VESA F ++AD ++ IL+GR+WAGHNI +FDC RI+EAFA
Sbjct: 59 NLNLITPRSVKCNGIKREDVESALTFADIADTVYDILHGRIWAGHNILKFDCPRIREAFA 118
Query: 121 EIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLK 180
EIG+ P P G IDSL +LT++FGRRAG+MKMATLA+YFGLG Q HRSLDDVRMN EVLK
Sbjct: 119 EIGRDPPEPKGTIDSLALLTQRFGRRAGDMKMATLATYFGLGNQTHRSLDDVRMNFEVLK 178
Query: 181 HCATVLFL----------------ESSLPNTFNSNLQSSLTVTTRSRSNGKLPCREETSR 224
+CATVLFL ESSLP+ N ++ T T SR R T +
Sbjct: 179 YCATVLFLVCSLYELIQKHAIFQQESSLPDELIENSVTTTTPETSSR-------RRRTIK 231
Query: 225 KSP 227
KSP
Sbjct: 232 KSP 234
>gi|224124082|ref|XP_002330100.1| predicted protein [Populus trichocarpa]
gi|222871234|gb|EEF08365.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 263 bits (672), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 119/175 (68%), Positives = 145/175 (82%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
EI FFD+ETTVP R GQ + +LEFGAI+VCP+KL E+ S+STL++P + ++ S RC+
Sbjct: 6 EIAFFDVETTVPTRPGQGYAILEFGAILVCPQKLEEIRSYSTLVRPSNPKLISSLSVRCN 65
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GI EAV SAP F ++AD ++ IL+GR+WAGHNI RFDC RI+EAFAEIG+ AP P G I
Sbjct: 66 GIIPEAVVSAPSFADIADTVYDILHGRIWAGHNIVRFDCVRIREAFAEIGRAAPEPKGTI 125
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFL 188
DSL +LT+KFGRRAGNMKMA+LA+YFGLG Q HRSLDDVRMN+EVLKHCATVLFL
Sbjct: 126 DSLALLTQKFGRRAGNMKMASLATYFGLGNQTHRSLDDVRMNVEVLKHCATVLFL 180
>gi|125531875|gb|EAY78440.1| hypothetical protein OsI_33531 [Oryza sativa Indica Group]
Length = 482
Score = 250 bits (638), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 124/206 (60%), Positives = 158/206 (76%), Gaps = 13/206 (6%)
Query: 10 AGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKS 69
AG EI FFD+ET+VP+RAGQ + +LEFGAI+VCPR+LV + S++TL++P DL V+ S
Sbjct: 24 AGGPEIAFFDVETSVPQRAGQGYALLEFGAILVCPRRLVVVGSYATLVRPGDLGVVSAAS 83
Query: 70 SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVP 129
RC+GITR+AV +AP F +VAD ++S+L H + R RI+EAFAEIG+P P P
Sbjct: 84 VRCNGITRDAVAAAPAFRDVADAVYSVL-------HGLTR---TRIREAFAEIGRPPPEP 133
Query: 130 VGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLE 189
GMID+L +LT+KFGRRAG+MKMA+LA+YFGLG+Q HRSLDDVRMNLEVLK+CATVLFLE
Sbjct: 134 KGMIDTLPLLTQKFGRRAGDMKMASLANYFGLGRQSHRSLDDVRMNLEVLKYCATVLFLE 193
Query: 190 SSLPNTFN-SNLQSSLTVTTRSRSNG 214
+SLP NL TRS++NG
Sbjct: 194 ASLPGVLTVENLVER--AITRSQANG 217
>gi|222629868|gb|EEE62000.1| hypothetical protein OsJ_16781 [Oryza sativa Japonica Group]
Length = 252
Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 123/202 (60%), Positives = 154/202 (76%), Gaps = 9/202 (4%)
Query: 14 EIVFFDLETTVPR-RAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
E+VFFD+ETT GQR VLEFGAI+VCPR+LVE++S+ T+I+P D+SAV S R
Sbjct: 5 EMVFFDVETTAASADEGQR-SVLEFGAIVVCPRRLVEVDSYHTVIRPGDMSAV---SKRF 60
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
+ V SAP F++VA++IF +L+GRVWAGHNI+RFDC RI+EAFA IG+ AP PV +
Sbjct: 61 AAMVDVDVASAPSFDQVAERIFGVLDGRVWAGHNIQRFDCHRIREAFAAIGRAAPEPVAI 120
Query: 133 IDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSL 192
+DSL VL FGRRAG++KMATLASYFG+G+Q HRSLDD RMNLEVLK CAT+L LES+L
Sbjct: 121 VDSLNVLAHDFGRRAGDLKMATLASYFGIGKQSHRSLDDARMNLEVLKRCATLLLLESTL 180
Query: 193 -PNTFNSNLQSSLTVTTRSRSN 213
P +S+ S+ TR RSN
Sbjct: 181 PPGMLHSSAAGSI---TRKRSN 199
>gi|334183910|ref|NP_001185397.1| polynucleotidyl transferase, ribonuclease H-like protein
[Arabidopsis thaliana]
gi|332197465|gb|AEE35586.1| polynucleotidyl transferase, ribonuclease H-like protein
[Arabidopsis thaliana]
Length = 495
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 118/204 (57%), Positives = 149/204 (73%), Gaps = 11/204 (5%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
+EI FFDLET VP ++G+ F +LEFGAI+VCPR+L EL S+STL++P DLS ++ + R
Sbjct: 11 SEIAFFDLETAVPTKSGEPFAILEFGAILVCPRRLEELYSYSTLVRPTDLSLISTLTKRR 70
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
GITR+ V SA F E+ADK++ IL+GR+WAGHNI RFDC RI+EAFAEIG P P
Sbjct: 71 SGITRDGVLSAHTFSEIADKVYDILHGRIWAGHNIIRFDCVRIREAFAEIGLSPPEPKAT 130
Query: 133 IDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSL 192
IDSL +L++KFG+RAG+MKMA+LA+YFGLG Q HRSLDDVRMNLE ESS+
Sbjct: 131 IDSLSLLSQKFGKRAGDMKMASLATYFGLGDQAHRSLDDVRMNLE-----------ESSV 179
Query: 193 PNTFNSNLQSSLTVTTRSRSNGKL 216
P+ S + R+RSNGKL
Sbjct: 180 PDILTDMSWFSPRKSPRTRSNGKL 203
>gi|242035185|ref|XP_002464987.1| hypothetical protein SORBIDRAFT_01g029940 [Sorghum bicolor]
gi|241918841|gb|EER91985.1| hypothetical protein SORBIDRAFT_01g029940 [Sorghum bicolor]
Length = 435
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 111/202 (54%), Positives = 154/202 (76%), Gaps = 7/202 (3%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDL-SAVALKSSRC 72
EIVF D+ET+ P R +LEFGA++VC R+LV++ S++TL++P D +AV ++RC
Sbjct: 19 EIVFLDVETSTPPRV-----LLEFGAVVVCSRRLVDVSSYATLVRPADPDAAVPDPTARC 73
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
GITR+AV AP F +VADK++ +L+GRVWAGHNI +FD I++AFAEIG+P P P GM
Sbjct: 74 SGITRDAVADAPPFRDVADKVYDVLHGRVWAGHNIVKFDSVIIRDAFAEIGRPPPEPKGM 133
Query: 133 IDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSL 192
+D+L +LT+ FG RAG+MK+A+LA+YFGLG+Q+HRSLDDV+MN++VLK+CATVLFLE SL
Sbjct: 134 VDTLPLLTQWFGPRAGDMKLASLANYFGLGKQRHRSLDDVKMNIDVLKNCATVLFLEESL 193
Query: 193 PNTFN-SNLQSSLTVTTRSRSN 213
N+ T+ T+ S+
Sbjct: 194 RGVLPVQNMLEGATIRTQGTSD 215
>gi|255547337|ref|XP_002514726.1| exonuclease, putative [Ricinus communis]
gi|223546330|gb|EEF47832.1| exonuclease, putative [Ricinus communis]
Length = 448
Score = 233 bits (593), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 114/210 (54%), Positives = 150/210 (71%), Gaps = 3/210 (1%)
Query: 9 AAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALK 68
A +EI FFDLETT+P + F +LEFGAI+VCPR LVEL +++T ++P ++
Sbjct: 8 AGQRSEIAFFDLETTLPGEC-EGFAILEFGAILVCPRTLVELHTYATFVQPAADPSLIFS 66
Query: 69 SS--RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPA 126
SS R +GIT + + SAP F ++AD ++ ILNGR+WAGHN+++FD +I+EAFAEIG+
Sbjct: 67 SSFLRSNGITYDNIVSAPTFSDIADTVYEILNGRLWAGHNVQKFDSVKIREAFAEIGRQP 126
Query: 127 PVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVL 186
PVP G+ID+ +LT KFGRRAG+MKMA+LA+YFGLG+Q HRSLDDVRMN++VLK CATVL
Sbjct: 127 PVPKGVIDTWELLTHKFGRRAGDMKMASLATYFGLGKQTHRSLDDVRMNVDVLKCCATVL 186
Query: 187 FLESSLPNTFNSNLQSSLTVTTRSRSNGKL 216
L + LP F S T S G L
Sbjct: 187 LLVTILPYAFVVTNVGSTTFQPAPFSRGTL 216
>gi|302823961|ref|XP_002993628.1| hypothetical protein SELMODRAFT_48207 [Selaginella moellendorffii]
gi|300138556|gb|EFJ05320.1| hypothetical protein SELMODRAFT_48207 [Selaginella moellendorffii]
Length = 175
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 105/175 (60%), Positives = 138/175 (78%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
EIVF+D+ETTVP GQ + +LEFGA++V R L EL+SF+TL++P L+ V+ +S C+
Sbjct: 1 EIVFYDVETTVPEVKGQGYEILEFGAVVVSARGLEELDSFTTLVRPSSLALVSPRSVSCN 60
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GI ++++ AP F E+AD++ ++L+GRVWAGHNI RFD RIKEAFA IG+ P G I
Sbjct: 61 GIVQDSLVGAPSFLEIADRVHALLHGRVWAGHNILRFDNLRIKEAFASIGRAGPEAAGHI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFL 188
D+ +L + FG+RAGN+KMATLASYFGLG+Q+HRSL DVRMN+EVLK CATVLFL
Sbjct: 121 DTFPLLRKSFGQRAGNLKMATLASYFGLGKQEHRSLADVRMNIEVLKLCATVLFL 175
>gi|302782960|ref|XP_002973253.1| hypothetical protein SELMODRAFT_58287 [Selaginella moellendorffii]
gi|300159006|gb|EFJ25627.1| hypothetical protein SELMODRAFT_58287 [Selaginella moellendorffii]
Length = 175
Score = 226 bits (576), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 105/175 (60%), Positives = 138/175 (78%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
EIVF+D+ETTVP GQ + +LEFGA++V R L EL+SF+TL++P L+ V+ +S C+
Sbjct: 1 EIVFYDVETTVPEVKGQGYDILEFGAVVVSARGLGELDSFTTLVRPSSLALVSPRSVSCN 60
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GI ++++ AP F E+AD++ ++L+GRVWAGHNI RFD RIKEAFA IG+ P G I
Sbjct: 61 GIVQDSLVGAPSFLEIADRVHALLHGRVWAGHNILRFDNLRIKEAFASIGRAGPEAAGHI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFL 188
D+ +L + FG+RAGN+KMATLASYFGLG+Q+HRSL DVRMN+EVLK CATVLFL
Sbjct: 121 DTFPLLRKSFGQRAGNLKMATLASYFGLGKQEHRSLADVRMNIEVLKLCATVLFL 175
>gi|357130185|ref|XP_003566731.1| PREDICTED: uncharacterized protein LOC100832440 [Brachypodium
distachyon]
Length = 265
Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 106/185 (57%), Positives = 138/185 (74%), Gaps = 5/185 (2%)
Query: 14 EIVFFDLETTV-PRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
E+VFFD+ET P ++W+LEFGAI+VCPR+L+EL S+STLI+P D A A+
Sbjct: 9 EMVFFDVETAAAPSSCSHQWWILEFGAILVCPRRLLELSSYSTLIRPDDPQA-AISKRFL 67
Query: 73 DGITREAVE---SAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVP 129
D I ++ + SAP F EVA +I ++L+GRVWAGHNIRRFD R++ AFA G P P P
Sbjct: 68 DSIPSDSGQDHSSAPTFSEVAGEIHALLHGRVWAGHNIRRFDVPRLRAAFAAAGLPPPEP 127
Query: 130 VGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLE 189
++DSL +L +FGRRAG++KMATLA+YFG+G+Q+HR LDD RMNLEV+KHCA VL LE
Sbjct: 128 AAVVDSLDLLASEFGRRAGDLKMATLAAYFGIGKQRHRGLDDARMNLEVIKHCAAVLLLE 187
Query: 190 SSLPN 194
S+LP
Sbjct: 188 STLPG 192
>gi|383100770|emb|CCG48001.1| exonuclease, putative [Triticum aestivum]
Length = 282
Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 117/187 (62%), Positives = 145/187 (77%), Gaps = 4/187 (2%)
Query: 10 AGTAEIVFFDLETTV---PRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVA 66
A E+VFFD+ET P + ++W+LEFGAI+VCPR+LVEL S+STLI+P D SAV+
Sbjct: 5 AAKEEMVFFDVETAAAPSPSDSSGQWWLLEFGAILVCPRRLVELASYSTLIRPGDPSAVS 64
Query: 67 LKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPA 126
+ S D A +AP F +VAD IF++L+GRVWAGHNIRRFDC R++EAFA G+ A
Sbjct: 65 RRFS-GDPSLSAAFRAAPPFADVADDIFALLDGRVWAGHNIRRFDCHRVREAFAAAGRAA 123
Query: 127 PVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVL 186
P PV ++DSL VL FGRRAG++KMATLA+YFG+G+Q HRSLDDVRMNLEVLKHCA VL
Sbjct: 124 PEPVAVVDSLSVLARGFGRRAGDLKMATLAAYFGIGKQTHRSLDDVRMNLEVLKHCAAVL 183
Query: 187 FLESSLP 193
LES+LP
Sbjct: 184 MLESNLP 190
>gi|195657335|gb|ACG48135.1| hypothetical protein [Zea mays]
Length = 458
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 105/201 (52%), Positives = 146/201 (72%), Gaps = 5/201 (2%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
EIVF D+ET+ P +LEFGA++VC R+LVE+ SF+TL++P +L A+ ++R +
Sbjct: 14 EIVFLDVETSTPPCV-----LLEFGAVVVCSRRLVEVSSFATLVRPANLDALPDPTARSN 68
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GITR + AP F +VAD ++ +L+GRVWAGHNI FD I +AFAEIG+P P P MI
Sbjct: 69 GITRGTLADAPPFGDVADMVYDVLHGRVWAGHNIVHFDSMIIMDAFAEIGRPPPQPKAMI 128
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSLP 193
D+L +LT+ FG RAG+MK+A+LA+YFGLG+Q+HRSLDDV+MN++V K+CATVLFLE SL
Sbjct: 129 DTLPLLTQCFGPRAGDMKLASLANYFGLGKQRHRSLDDVKMNIDVFKNCATVLFLEESLR 188
Query: 194 NTFNSNLQSSLTVTTRSRSNG 214
+Q+ + + R+ G
Sbjct: 189 GVRVPTVQNMSSGGAKIRTQG 209
>gi|300681549|emb|CBH32646.1| exonuclease, putative [Triticum aestivum]
Length = 283
Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 115/183 (62%), Positives = 145/183 (79%), Gaps = 4/183 (2%)
Query: 14 EIVFFDLETTV---PRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
E+VFFD+ET P A ++W+LEFGAI+VCPR+LVEL S+STLI+P D +AV+ + S
Sbjct: 8 EMVFFDVETAAAPSPTDASTQWWLLEFGAILVCPRRLVELSSYSTLIRPGDPAAVSRRFS 67
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
D A +AP F +VAD IF++L+GRVWAGHNIRRFDC R+++AFA G+ AP PV
Sbjct: 68 -GDPALSAAFRAAPPFADVADDIFALLHGRVWAGHNIRRFDCHRVRDAFAAAGRAAPEPV 126
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLES 190
++DSL VL + FGRRAG++KMATLA+YFG+G+Q HRSLDDVRMNLEVLKHCA VL LES
Sbjct: 127 AVVDSLSVLAQGFGRRAGDLKMATLAAYFGIGKQTHRSLDDVRMNLEVLKHCAAVLMLES 186
Query: 191 SLP 193
+LP
Sbjct: 187 NLP 189
>gi|224029725|gb|ACN33938.1| unknown [Zea mays]
gi|414867639|tpg|DAA46196.1| TPA: hypothetical protein ZEAMMB73_898479 [Zea mays]
Length = 457
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 101/179 (56%), Positives = 138/179 (77%), Gaps = 5/179 (2%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
EIVF D+ET+ P +LEFGA++VC R+LV++ SF+TL++P +L A+ ++R +
Sbjct: 14 EIVFLDVETSTPPCV-----LLEFGAVVVCSRRLVDVSSFATLVRPANLDALPDPTARSN 68
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GITR + AP F +VAD ++ +L+GRVWAGHNI FD I +AFAEIG+P P P MI
Sbjct: 69 GITRGTLADAPPFRDVADMVYDVLHGRVWAGHNIVHFDSMIIMDAFAEIGRPPPQPKAMI 128
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSL 192
D+L +LT+ FG RAG+MK+A+LA+YFGLG+Q+HRSLDDV+MN++V K+CATVLFLE SL
Sbjct: 129 DTLPLLTQCFGPRAGDMKLASLANYFGLGKQRHRSLDDVKMNIDVFKNCATVLFLEESL 187
>gi|218184498|gb|EEC66925.1| hypothetical protein OsI_33530 [Oryza sativa Indica Group]
Length = 422
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 109/181 (60%), Positives = 134/181 (74%), Gaps = 2/181 (1%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVEL-ESFSTLIKPKDLSAVALKSSRC 72
EI FFD+ET++P +R +LEFG+I +CPR+LVE+ E F TL++P DL V R
Sbjct: 22 EIAFFDVETSMPWGPRERRTLLEFGSIFLCPRQLVEVAEPFITLVRPSDLGVVTEALER- 80
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
GITR A+E AP F +VAD I ++L+GR+WAGHNI FD I+EAFAEIG+ P P GM
Sbjct: 81 KGITRGALEDAPPFCDVADNIHNVLHGRIWAGHNIISFDSEIIREAFAEIGRSPPEPKGM 140
Query: 133 IDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSL 192
ID+L +LT+ FGRRAGNMKMA LA YF LG Q HRSL DVRMNL+VLK C+TVLFLE +
Sbjct: 141 IDTLPLLTQTFGRRAGNMKMANLADYFNLGPQIHRSLYDVRMNLDVLKCCSTVLFLEDNF 200
Query: 193 P 193
P
Sbjct: 201 P 201
>gi|15451562|gb|AAK98686.1|AC021893_20 Putative exonuclease [Oryza sativa Japonica Group]
gi|31432000|gb|AAP53699.1| exonuclease family protein, expressed [Oryza sativa Japonica Group]
gi|222612804|gb|EEE50936.1| hypothetical protein OsJ_31475 [Oryza sativa Japonica Group]
Length = 436
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 107/188 (56%), Positives = 133/188 (70%), Gaps = 1/188 (0%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
EI FFD+ET++P +R +LEFG+I +CPR + E F TL++P DL V R
Sbjct: 22 EIAFFDVETSMPWGPRERRTLLEFGSIFLCPRLVEVAEPFVTLVRPSDLGVVTEALER-K 80
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GITR A+E AP F +VAD I ++L+GR+WAGHNI FD I+EAFAEIG+ P P GMI
Sbjct: 81 GITRGALEDAPPFCDVADNIHNVLHGRIWAGHNIISFDSEIIREAFAEIGRSPPEPKGMI 140
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSLP 193
D+L +LT+ FGRRAGNMKMA LA YF LG Q HRSL DVRMNL+VLK C+TVLFLE + P
Sbjct: 141 DTLPLLTQTFGRRAGNMKMANLADYFNLGPQIHRSLYDVRMNLDVLKCCSTVLFLEDNFP 200
Query: 194 NTFNSNLQ 201
+ L+
Sbjct: 201 KLLSGGLR 208
>gi|449533437|ref|XP_004173682.1| PREDICTED: uncharacterized protein LOC101223607, partial [Cucumis
sativus]
Length = 146
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 95/139 (68%), Positives = 120/139 (86%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
+EI FFD+ETTVP R GQ+F +LEFGAI+VCP+KLVELES+STL+KP DLS ++ S RC
Sbjct: 8 SEIAFFDVETTVPTRQGQKFSILEFGAILVCPKKLVELESYSTLVKPSDLSLISSLSVRC 67
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
+GITR+AV S+P F ++AD+++ IL+GR+WAGHNI RFDCARI+EAFAEIG PAP P G
Sbjct: 68 NGITRDAVISSPTFAQIADRVYDILHGRIWAGHNILRFDCARIREAFAEIGVPAPEPKGT 127
Query: 133 IDSLGVLTEKFGRRAGNMK 151
IDSL +LT++FGRRAG+MK
Sbjct: 128 IDSLALLTQRFGRRAGDMK 146
>gi|302769470|ref|XP_002968154.1| hypothetical protein SELMODRAFT_89701 [Selaginella moellendorffii]
gi|300163798|gb|EFJ30408.1| hypothetical protein SELMODRAFT_89701 [Selaginella moellendorffii]
Length = 168
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 117/175 (66%), Gaps = 10/175 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
EIVF+DLET++P Q +LEFGA+++ + LVE++S++T ++P +++ +
Sbjct: 2 EIVFYDLETSMPEGKEQSREILEFGAVVLSAKGLVEVDSYTTPVRPSVMNSRN-AAGTSS 60
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
G R +ES + GR+WAGHNI FD RI+EAFA IG+P P G I
Sbjct: 61 GALRLLIESMS---------YCTQAGRIWAGHNICEFDNVRIEEAFASIGRPMPEAAGFI 111
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFL 188
D+L +L FG+RAGN+K++TLA+YF LG+Q+HRSL DVRMN++VLK CATVL L
Sbjct: 112 DTLPLLQRTFGQRAGNLKLSTLAAYFSLGKQEHRSLPDVRMNIKVLKRCATVLLL 166
>gi|326529009|dbj|BAK00898.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 305
Score = 147 bits (370), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 88/185 (47%), Positives = 119/185 (64%), Gaps = 14/185 (7%)
Query: 14 EIVFFDLETTVPRRA-GQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
E+VFFD+E P ++EF AI+VCPR+LVE+ S+STLI+ +D SS
Sbjct: 8 EMVFFDVEAAQPPSCPSGECRLVEFAAILVCPRRLVEVSSYSTLIR-QDHPDADENSS-- 64
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
+ A +AP FE+V IF +L+GRVWAGH IRR CAR++ AFA G PAP PVG+
Sbjct: 65 --VLLSAASAAPAFEDVFPDIFELLDGRVWAGHGIRRSGCARVRGAFAAFGLPAPEPVGV 122
Query: 133 IDSLGVLTEK--FGRRAGNMKMATLASYFGLGQQKHRS---LDDVRMNLEVLKHCATVLF 187
+DSL VL + FG+ + + A LA +FG+G ++ R LD R++L+VLKHCA VL
Sbjct: 123 VDSLDVLVAQGCFGQ---DEEAAALAEHFGVGVRRARGLRCLDGARLSLDVLKHCAGVLL 179
Query: 188 LESSL 192
+ESSL
Sbjct: 180 IESSL 184
>gi|194698552|gb|ACF83360.1| unknown [Zea mays]
gi|195655181|gb|ACG47058.1| hypothetical protein [Zea mays]
gi|414867638|tpg|DAA46195.1| TPA: hypothetical protein ZEAMMB73_898479 [Zea mays]
Length = 366
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 64/96 (66%), Positives = 81/96 (84%)
Query: 97 LNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLA 156
++GRVWAGHNI FD I +AFAEIG+P P P MID+L +LT+ FG RAG+MK+A+LA
Sbjct: 1 MHGRVWAGHNIVHFDSMIIMDAFAEIGRPPPQPKAMIDTLPLLTQCFGPRAGDMKLASLA 60
Query: 157 SYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSL 192
+YFGLG+Q+HRSLDDV+MN++V K+CATVLFLE SL
Sbjct: 61 NYFGLGKQRHRSLDDVKMNIDVFKNCATVLFLEESL 96
>gi|226503946|ref|NP_001140253.1| uncharacterized protein LOC100272294 [Zea mays]
gi|194698700|gb|ACF83434.1| unknown [Zea mays]
gi|223944519|gb|ACN26343.1| unknown [Zea mays]
gi|414867636|tpg|DAA46193.1| TPA: hypothetical protein ZEAMMB73_898479 [Zea mays]
gi|414867637|tpg|DAA46194.1| TPA: hypothetical protein ZEAMMB73_898479 [Zea mays]
Length = 370
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/94 (68%), Positives = 79/94 (84%)
Query: 99 GRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASY 158
GRVWAGHNI FD I +AFAEIG+P P P MID+L +LT+ FG RAG+MK+A+LA+Y
Sbjct: 7 GRVWAGHNIVHFDSMIIMDAFAEIGRPPPQPKAMIDTLPLLTQCFGPRAGDMKLASLANY 66
Query: 159 FGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSL 192
FGLG+Q+HRSLDDV+MN++V K+CATVLFLE SL
Sbjct: 67 FGLGKQRHRSLDDVKMNIDVFKNCATVLFLEESL 100
>gi|242052651|ref|XP_002455471.1| hypothetical protein SORBIDRAFT_03g011452 [Sorghum bicolor]
gi|241927446|gb|EES00591.1| hypothetical protein SORBIDRAFT_03g011452 [Sorghum bicolor]
Length = 142
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 79/95 (83%), Gaps = 1/95 (1%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKD-LSAVALKSSRC 72
E+ FFD+ET++P+RA Q + +LEFGA++VCPR+LVE+ S++TL++P D +SAV+ S RC
Sbjct: 47 EMAFFDVETSMPQRADQGYALLEFGAVLVCPRRLVEVASYATLVRPADPVSAVSAASVRC 106
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNI 107
+GITR+AV AP F +VAD ++ +LNGRVWAGHNI
Sbjct: 107 NGITRDAVSGAPPFRDVADAVYDLLNGRVWAGHNI 141
>gi|297814576|ref|XP_002875171.1| hypothetical protein ARALYDRAFT_346774 [Arabidopsis lyrata subsp.
lyrata]
gi|297321009|gb|EFH51430.1| hypothetical protein ARALYDRAFT_346774 [Arabidopsis lyrata subsp.
lyrata]
Length = 267
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 93/178 (52%), Gaps = 11/178 (6%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
++F DLE ++ V+EF +IV + L + ++ T IKP D V+ R +G
Sbjct: 70 LLFLDLEF-------EKEDVIEFAVLIVDSKTLEAVYNYETFIKPSD-GVVSKFRDRPNG 121
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPA---PVPVG 131
IT+ ++ AP F +V + IF +L+G +W GHNI R D + + + P P
Sbjct: 122 ITKAKLQRAPTFLDVHEDIFKVLHGGIWIGHNIIRTDIPLLLKMYRRHNLPEKRIPSFRY 181
Query: 132 MIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLE 189
ID+L L F + +K+ L +F L +Q HRSL+D +NL+V K C V+ +E
Sbjct: 182 KIDTLKWLEGNFLGKTQGLKLNELGKFFKLEEQTHRSLEDCDLNLQVFKLCLCVIGME 239
>gi|297814554|ref|XP_002875160.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297320998|gb|EFH51419.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 93/178 (52%), Gaps = 11/178 (6%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
++F DLE ++ V+EF +IV + L + ++ T IKP D V+ R +G
Sbjct: 69 LLFLDLEF-------EKEDVIEFAVLIVDSKTLEAVYNYETFIKPSD-GVVSKFRDRPNG 120
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPA---PVPVG 131
IT+ ++ AP F +V + IF +L+G +W GHNI R D + + + P P
Sbjct: 121 ITKAKLQRAPTFLDVHEDIFKVLHGGIWIGHNIIRTDIPLLLKMYRRHNLPEKRIPSFRY 180
Query: 132 MIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLE 189
ID+L L F + +K+ L +F L +Q HRSL+D +NL+V K C V+ +E
Sbjct: 181 KIDTLKWLEGNFLGKTQGLKLNELGKFFKLEEQTHRSLEDCDLNLQVFKLCLCVIGME 238
>gi|302773940|ref|XP_002970387.1| hypothetical protein SELMODRAFT_411374 [Selaginella moellendorffii]
gi|300161903|gb|EFJ28517.1| hypothetical protein SELMODRAFT_411374 [Selaginella moellendorffii]
Length = 319
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 59/76 (77%)
Query: 127 PVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVL 186
P G ID+L +L FG+RA N+K++TLA+YF LG+Q+HRSL DVRMN++VLK CATVL
Sbjct: 2 PEAAGFIDTLPLLQRTFGQRARNLKLSTLAAYFSLGKQEHRSLPDVRMNIKVLKRCATVL 61
Query: 187 FLESSLPNTFNSNLQS 202
LES+ P+ F S+ Q+
Sbjct: 62 LLESNFPHLFQSSPQA 77
>gi|449477209|ref|XP_004154961.1| PREDICTED: uncharacterized LOC101223607 [Cucumis sativus]
Length = 359
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 48/61 (78%)
Query: 152 MATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSLPNTFNSNLQSSLTVTTRSR 211
MATLASYFG+GQQ HRSLDDVRMNLEVLK+CATVLFLESSLP F N S TR R
Sbjct: 1 MATLASYFGIGQQTHRSLDDVRMNLEVLKYCATVLFLESSLPEVFPENSWVSPNAVTRRR 60
Query: 212 S 212
+
Sbjct: 61 A 61
>gi|383787519|ref|YP_005472088.1| DNA polymerase III subunit alpha [Fervidobacterium pennivorans DSM
9078]
gi|383110366|gb|AFG35969.1| DNA polymerase III, alpha chain [Fervidobacterium pennivorans DSM
9078]
Length = 1395
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 83/178 (46%), Gaps = 15/178 (8%)
Query: 12 TAEIVFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKS 69
A V DLETT PR ++E GA+ + K+ + F TL+KP L KS
Sbjct: 385 NATYVVLDLETTGLNPRLDE----IMEIGAVKIVEGKISD--EFHTLVKPTTLKE---KS 435
Query: 70 SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVP 129
+ GIT E ++ APE EV DK++ L V HN FD + +K FA G+ P
Sbjct: 436 LQITGITEEMLKDAPEIGEVIDKLWQFLKDAVLVAHN-ADFDISFLKHTFARFGREFNPP 494
Query: 130 VGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDDVRMNLEVLKHCATVL 186
ID+L + + + L +F LG+ Q HR+LDD R+ V +L
Sbjct: 495 --YIDTLRLSQALLRNQMKAFSLDKLVEHFKLGKFQHHRALDDARVTARVFLELVELL 550
>gi|297198751|ref|ZP_06916148.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
29083]
gi|297147193|gb|EDY59400.2| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
29083]
Length = 327
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 95/204 (46%), Gaps = 39/204 (19%)
Query: 51 ESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ + TL+ P +D V + G+T +A+E AP F+++AD+ S L+GRV HN
Sbjct: 55 DHWYTLVNPERDPGPVWIH-----GLTSDALEGAPLFQDIADEFSSRLDGRVLVAHNA-V 108
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRS 168
FD I +A G+ APV + VL+++ G N K+ +LA++FG+ QQ+ H +
Sbjct: 109 FDWQMIAREYARAGRVAPVSQRLCTI--VLSKELGLPLPNHKLESLAAHFGVVQQRAHHA 166
Query: 169 LDDVRMNLEVLKHCATVLFLESSLPNTFNSNLQSSLTVTTRSRSNGKLPCREETSRKSPP 228
LDD R+ L F +L+++ + R + P E T R P
Sbjct: 167 LDDARV-----------------LAEAFRPSLRAAAARSVRLPLHECRPLTEWTDRAVPR 209
Query: 229 ISLGY------------QRSAVPY 240
S GY +R A PY
Sbjct: 210 QSAGYGGYRTTSWRPTRKRPACPY 233
>gi|256825435|ref|YP_003149395.1| hypothetical protein Ksed_16150 [Kytococcus sedentarius DSM 20547]
gi|256688828|gb|ACV06630.1| exonuclease, DNA polymerase III, epsilon subunit family [Kytococcus
sedentarius DSM 20547]
Length = 584
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 82/167 (49%), Gaps = 12/167 (7%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V FDLETT A + EFGA+ V ++V F TL++P + + GI
Sbjct: 28 VVFDLETTGTSSADSE--ITEFGAVKVRGGEVVG--EFQTLVRPA--AGIPPYIQVLTGI 81
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAP-VPVGMID 134
T V +AP E+V + V HN RFD A ++ A G+PAP PV +D
Sbjct: 82 TTAMVSAAPSIEQVLPNFLEFVGDAVLVAHNA-RFDTAFVRRACERTGRPAPGNPV--LD 138
Query: 135 SLGVLTEKFGR-RAGNMKMATLASYF-GLGQQKHRSLDDVRMNLEVL 179
++ + + R N K++TLA+YF HR+LDD R ++VL
Sbjct: 139 TVHLARQLLPRPEVPNHKLSTLAAYFRAETTPSHRALDDARATVDVL 185
>gi|291301852|ref|YP_003513130.1| DNA polymerase III subunit epsilon [Stackebrandtia nassauensis DSM
44728]
gi|290571072|gb|ADD44037.1| DNA polymerase III, epsilon subunit [Stackebrandtia nassauensis DSM
44728]
Length = 578
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 85/172 (49%), Gaps = 14/172 (8%)
Query: 13 AEIVFF--DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
+E+ F DLETT A + E GA+ V R L ++TL+ P + A+ + S
Sbjct: 22 SEVTFMVVDLETT--GVASDACSITEIGAVKV--RGGEVLGEYATLVNPGE--AIDARIS 75
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
GIT V AP EEV G VW HN FD ++ A A+ P P P
Sbjct: 76 ALTGITDAMVADAPAIEEVLPSFLEFARGAVWVAHNA-PFDVGFLRSACAQAELPWPRP- 133
Query: 131 GMIDSLGVLTEKFGRRA--GNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
++D++ VL + R+ N +++TLA YFG + HR+LDD R ++VL
Sbjct: 134 QVVDTV-VLARRLVDRSEVPNKRLSTLARYFGARVKPSHRALDDARATVDVL 184
>gi|406663582|ref|ZP_11071623.1| hypothetical protein B879_03655 [Cecembia lonarensis LW9]
gi|405552189|gb|EKB47732.1| hypothetical protein B879_03655 [Cecembia lonarensis LW9]
Length = 457
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 94/190 (49%), Gaps = 37/190 (19%)
Query: 14 EIVFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
E V D+ETT P + G + E A++ +++ F TL+ P+ + +
Sbjct: 2 EFVIIDIETTGGNPSQGG----ITEIAALVFDGNNIID--RFHTLVNPERFIPNFI--TG 53
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GI++E VE+AP+FEE+A+ ++++L GR + HN+ FD A I+EAF IGK +P
Sbjct: 54 LTGISQEMVENAPKFEEIAEDLWNLLEGRTFVAHNV-NFDYAFIREAFKGIGKELNLP-- 110
Query: 132 MIDSLGVLTEKFGRRAGNMKMATLASYFGLGQ----------QKHRSLDDVR----MNLE 177
+ T + R+A L SY GLG+ +HR+ D + +
Sbjct: 111 -----KLCTVRLSRKA----FPGLGSY-GLGRICEQLAIEISHRHRAFGDAEATAILFQK 160
Query: 178 VLKHCATVLF 187
+ +H + +++
Sbjct: 161 IYQHQSDIIY 170
>gi|413942181|gb|AFW74830.1| hypothetical protein ZEAMMB73_687643 [Zea mays]
Length = 722
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/37 (75%), Positives = 37/37 (100%)
Query: 152 MATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFL 188
+A+LA+YFGLG+Q+HRSLDDV+MN++VLK+CATVLFL
Sbjct: 410 LASLANYFGLGKQRHRSLDDVKMNIDVLKNCATVLFL 446
>gi|297814532|ref|XP_002875149.1| hypothetical protein ARALYDRAFT_346764 [Arabidopsis lyrata subsp.
lyrata]
gi|297320987|gb|EFH51408.1| hypothetical protein ARALYDRAFT_346764 [Arabidopsis lyrata subsp.
lyrata]
Length = 467
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 93/230 (40%), Gaps = 38/230 (16%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+ FFD + R +L F + C E+ S + + + + +
Sbjct: 8 VAFFDFKDG-------RDGLLHFSGMTACS------ETLSVITRRRFCVQATDNTGKPAS 54
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
T ++ P + ++ IL+ + W GH + D A+++E F IGKP+P P G+ID
Sbjct: 55 TTPARDKNKPTLDRYYKSVYFILHDKFWIGHGLVNSDWAKLEEEFNHIGKPSPKPKGIID 114
Query: 135 SLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVL-FLESSLP 193
S+ ++ K+A LA FGLG+ ++ N + +K C + L+
Sbjct: 115 SVPFIS-------SGTKLAQLAVLFGLGEPSLGYYNNCEENYDAIKQCRDAMPILDMEKE 167
Query: 194 NTFNSNL-----------QSSLTVTTRS------RSNGKLPCREETSRKS 226
SN+ Q TT+S R + KL +E RKS
Sbjct: 168 KDMGSNIYPMISHLRKFQQPPEKATTKSARGSEPRKSQKLEGKENPPRKS 217
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 71/147 (48%), Gaps = 15/147 (10%)
Query: 80 VESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVL 139
+++ P E ++++ +L+ + W GH++R+ D +++ IGK P P +ID++ +
Sbjct: 291 LKNEPTLSESYNRVYYMLHNKTWIGHDLRKSDFPMLEKECKHIGKSPPRPKEIIDTVPFI 350
Query: 140 TEKFGRRAGNMKMATLASYFGLGQQKHRSLD--DVRMNLEVLKHCATVL-FLESSLPNTF 196
+ K+ LA GLG+ R LD + ++N +K C + L+ +
Sbjct: 351 S-------SGSKLGKLAVLLGLGKPAAR-LDCRNCQVNYNAIKKCRDAMPILDVEIEQDK 402
Query: 197 NSNLQSSLTVTTRSRSNGKLPCREETS 223
SN+ +++ + + P EETS
Sbjct: 403 ESNMHPMISLIKKYQQ----PPEEETS 425
>gi|410028878|ref|ZP_11278714.1| DNA polymerase III subunit epsilon family exonuclease
[Marinilabilia sp. AK2]
Length = 457
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 84/170 (49%), Gaps = 33/170 (19%)
Query: 14 EIVFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
E V D+ETT P + G + E A++ +++ F TL+ P+ + +
Sbjct: 2 EFVIIDIETTGGNPSQGG----ITEIAALVFDGNNIID--RFHTLVNPERFIPNFI--TG 53
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GI++E VE+AP+FEE+A+ ++++L GR + HN+ FD I+EAF IGK +P
Sbjct: 54 LTGISQEMVENAPKFEEIAEDLWNLLEGRTFVAHNV-NFDYGFIREAFKSIGKELNLP-- 110
Query: 132 MIDSLGVLTEKFGRRAGNMKMATLASYFGLGQ----------QKHRSLDD 171
+ T + R+A L SY GLG+ +HR+ D
Sbjct: 111 -----KLCTVRLSRKA----FPGLGSY-GLGRICEQLAIEISHRHRAFGD 150
>gi|297814534|ref|XP_002875150.1| hypothetical protein ARALYDRAFT_904518 [Arabidopsis lyrata subsp.
lyrata]
gi|297320988|gb|EFH51409.1| hypothetical protein ARALYDRAFT_904518 [Arabidopsis lyrata subsp.
lyrata]
Length = 493
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 93/230 (40%), Gaps = 38/230 (16%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+ FFD + R +L F + C E+ S + + + + +
Sbjct: 8 VAFFDFKDG-------RDGLLHFSGMTACS------ETLSVITRHRFCVQATDNTGKPAS 54
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
T ++ P + ++ IL+ + W GH + D A+++E F IGKP+P P G+ID
Sbjct: 55 TTPARDKNKPTLDRYYKSVYFILHDKFWIGHGLVNSDWAKLEEEFNHIGKPSPKPKGIID 114
Query: 135 SLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVL-FLESSLP 193
++ ++ K+A LA FGLG+ ++ N + +K C + L+
Sbjct: 115 TVPFIS-------SGTKLAQLAVLFGLGEPSLGYYNNCEENYDAIKQCRDAMPILDMEKE 167
Query: 194 NTFNSNL-----------QSSLTVTTRS------RSNGKLPCREETSRKS 226
SN+ Q TT+S R + KL +E RKS
Sbjct: 168 KDMGSNIYPMISHLRKFQQPPEKATTKSARGSEPRKSQKLEGKENPPRKS 217
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 80 VESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVL 139
+++ P E ++++ +L+ + W GH++R+ D +++ IGK P P +ID++ +
Sbjct: 291 LKNEPTLSESYNRVYYMLHNKTWIGHDLRKSDFPMLEKECKHIGKSPPRPKEIIDTVPFI 350
Query: 140 TEKFGRRAGNMKMATLASYFGLGQQKHRSLD--DVRMNLEVLKHCATVL 186
+ K+ LA GLG+ R LD + ++N +K C +
Sbjct: 351 S-------SGSKLGKLAVLLGLGKPAAR-LDCRNCQVNYNAIKKCRDAM 391
>gi|269125769|ref|YP_003299139.1| DNA polymerase III subunit epsilon [Thermomonospora curvata DSM
43183]
gi|268310727|gb|ACY97101.1| DNA polymerase III, epsilon subunit [Thermomonospora curvata DSM
43183]
Length = 328
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 85/168 (50%), Gaps = 21/168 (12%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK-DLSAVALKSSRCDGITR 77
D+ET+ R R VL + + P + +E FSTL+ P D V + G+T
Sbjct: 20 DVETSGLRP--DRHRVLSLAVLTLRPDGHL-VEEFSTLLDPGCDPGPVHIH-----GLTP 71
Query: 78 EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLG 137
E + AP F+ VA+++ +L+GRV HN FD A + F G PV
Sbjct: 72 ERLRGAPTFDRVAERVAELLSGRVMVAHNA-AFDYAFLAHEFGRAGLHLPV------EQR 124
Query: 138 VLTEKFGRRAG----NMKMATLASYFGLGQQK-HRSLDDVRMNLEVLK 180
+ T GRR G +++++TLA+++G+ Q + H +LDD R+ VL+
Sbjct: 125 LCTLALGRRIGLPTPDLRLSTLAAHYGVPQHRAHDALDDARVLAGVLR 172
>gi|31432192|gb|AAP53854.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 514
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 34/43 (79%)
Query: 151 KMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSLP 193
+MA LA YF LG Q HRSL DVRMNL+VLK C+TVLFLE + P
Sbjct: 260 QMANLADYFNLGPQIHRSLYDVRMNLDVLKCCSTVLFLEDNFP 302
>gi|297814530|ref|XP_002875148.1| hypothetical protein ARALYDRAFT_904512 [Arabidopsis lyrata subsp.
lyrata]
gi|297320986|gb|EFH51407.1| hypothetical protein ARALYDRAFT_904512 [Arabidopsis lyrata subsp.
lyrata]
Length = 455
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 74/172 (43%), Gaps = 20/172 (11%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+ FFD + R +L F + C E+ S + + + + +
Sbjct: 8 VAFFDFKDG-------RDGLLHFSGMTACS------ETLSVITRCRFCVQATDNTGKPAS 54
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
T ++ P + ++ IL+ + W GH + D A+++E F IGKP+P P G+ID
Sbjct: 55 TTPARDKNKPTLDRYYKSVYFILHDKFWIGHGLVNSDWAKLEEEFNHIGKPSPKPKGIID 114
Query: 135 SLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVL 186
++ ++ K+A LA FGLG+ ++ N + +K C +
Sbjct: 115 TVPFIS-------SGTKLAQLAVLFGLGEPSLGYYNNCEENYDAIKQCRDAM 159
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 59/116 (50%), Gaps = 11/116 (9%)
Query: 80 VESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVL 139
+++ P E ++++ +L+ + W GH++R+ D +++ IGK P P +ID++ +
Sbjct: 253 LKNEPTLSESYNRVYYMLHNKTWIGHDLRKSDFPMLEKECKHIGKSPPRPKEIIDTVPFI 312
Query: 140 TEKFGRRAGNMKMATLASYFGLGQQKHRSLD--DVRMNLEVLKHCATVL-FLESSL 192
+ K+ LA GLG+ R LD + ++N +K C + L+ SL
Sbjct: 313 S-------SGSKLGKLAVLLGLGKPAAR-LDCRNCQVNYNAIKKCRDAMPILDVSL 360
>gi|443628580|ref|ZP_21112927.1| putative DNA polymerase III subunit epsilon [Streptomyces
viridochromogenes Tue57]
gi|443337934|gb|ELS52229.1| putative DNA polymerase III subunit epsilon [Streptomyces
viridochromogenes Tue57]
Length = 335
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 72/132 (54%), Gaps = 10/132 (7%)
Query: 51 ESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ + TL+ P +D V + G+T EA+E AP F+++AD+ + L+GRV HN
Sbjct: 57 DHWYTLVNPERDPGPVWIH-----GLTSEALEGAPLFKDIADEFSARLDGRVLVAHNA-V 110
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRS 168
FD I +A + APV + L+++ G N K+ +LA++FG+ QQ+ H +
Sbjct: 111 FDWQMIAREYARAEREAPVRQRLCTI--ALSKELGLPLPNHKLESLAAHFGVVQQRAHHA 168
Query: 169 LDDVRMNLEVLK 180
LDD R+ E +
Sbjct: 169 LDDARVLAEAFR 180
>gi|297800934|ref|XP_002868351.1| hypothetical protein ARALYDRAFT_355460 [Arabidopsis lyrata subsp.
lyrata]
gi|297314187|gb|EFH44610.1| hypothetical protein ARALYDRAFT_355460 [Arabidopsis lyrata subsp.
lyrata]
Length = 179
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 20/168 (11%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+ FFD + R +L F + C E+ S + + + + +
Sbjct: 8 VAFFDFKD-------GRDGLLHFSGMTACS------ETLSVITRHRFCVQATDNTGKPAS 54
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
T ++ P + ++ IL+ + W GH + D A+++E F IGKP+P P G+ID
Sbjct: 55 TTPARDKNKPTLDRYYKSVYFILHDKFWIGHGLVNSDWAKLEEEFNHIGKPSPKPKGIID 114
Query: 135 SLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
++ ++ K+A LA FGLG+ ++ N + +K C
Sbjct: 115 TVPFISS-------GTKLAQLAVLFGLGEPSLGYYNNCEENYDAIKQC 155
>gi|374990915|ref|YP_004966410.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis
BCW-1]
gi|297161567|gb|ADI11279.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis
BCW-1]
Length = 324
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 30/188 (15%)
Query: 51 ESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ + TL+ P +D V + G+T + + AP F E+AD++ L+GRV HN
Sbjct: 54 DHWYTLVNPQRDPGPVWIH-----GLTSDTLADAPLFSEIADELAQHLDGRVLVAHNA-V 107
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRS 168
FD + + +A G APV + L+++ G N K+ +LA+++G+ Q++ H +
Sbjct: 108 FDWSMLAREYARAGSAAPVRQRLCTI--ALSKELGLPLPNHKLESLAAHYGVVQERAHHA 165
Query: 169 LDDVRMNLEVLKHCATVLFLESSLPNTFNSNLQSSLTVTTRSRSNGKLPCREETSRKSPP 228
LDD R+ L TF +L ++ R L C+ T P
Sbjct: 166 LDDARV-----------------LAETFRPSLHAAAAGGLRL---PLLACQPLTEWSDAP 205
Query: 229 ISLGYQRS 236
+GYQRS
Sbjct: 206 RPIGYQRS 213
>gi|219847899|ref|YP_002462332.1| DNA polymerase III subunit epsilon [Chloroflexus aggregans DSM
9485]
gi|219542158|gb|ACL23896.1| DNA polymerase III, epsilon subunit [Chloroflexus aggregans DSM
9485]
Length = 280
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 83/159 (52%), Gaps = 10/159 (6%)
Query: 15 IVFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+VFFD+ETT + + G R + E + R++ +TLI P+ + ++S+ +
Sbjct: 15 LVFFDVETTGLDLQNGHR--ICELAMLRREHRQITG--QINTLINPE--RELDPQASQVN 68
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GI E ++SAP F E+ ++ + V HN+ FD + + A G P P+ +
Sbjct: 69 GIRAEDLQSAPRFAELTVQVVQLSQQAVRVAHNLP-FDESFLNMELARAGYP-PLTGPAL 126
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDV 172
D+L L + G R G++ + LA+ FGL HR++DDV
Sbjct: 127 DTLE-LARRLGIRRGSLSLGALATSFGLPTPTHRAMDDV 164
>gi|302387397|ref|YP_003823219.1| DNA polymerase III subunit epsilon [Clostridium saccharolyticum
WM1]
gi|302198025|gb|ADL05596.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum
WM1]
Length = 222
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 88/178 (49%), Gaps = 11/178 (6%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V FDLETT A +LE AI V + V +TL+ P + + ++R +GI
Sbjct: 19 VVFDLETTGISPAEDS--ILEISAIKVKGHEPVA--ELNTLVNPG--THIPAGATRINGI 72
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEI-GKPAPVPVGMID 134
T + V++AP +EV S + G + GHNI+ FD + A E+ GK VP +D
Sbjct: 73 TDDMVKAAPGLKEVLPDFLSFIEGEILVGHNIQSFDLLFLYRAAQELFGK--EVPNDYVD 130
Query: 135 SLGVLTEKFGRRAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLKHCATVLFLESS 191
+L + + + G ++ +++YF + + HR+L D MN + + ++ E +
Sbjct: 131 TL-FMAKTTLPQLGRHRLTDISAYFHINTEGAHRALSDCVMNQKCYEQMGKLVHKEEA 187
>gi|266619696|ref|ZP_06112631.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
gi|288868749|gb|EFD01048.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
Length = 264
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 19/177 (10%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V FDLETT + + ++E A+ V + ++E+FS L+ P+ + +++ +GI
Sbjct: 59 VVFDLETTGI--SAVKDDIIEISALKV--KNHEQVETFSRLVNPR--RPIPAGATKVNGI 112
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
T E V+S P E + + ++G + GHNI+ FD + A E+ + A V ID+
Sbjct: 113 TDEMVQSEPGLEFILPEFLDFIDGEILIGHNIQSFDLLFLNRAADEVCRKA-VLNDFIDT 171
Query: 136 LGVLTEKFGRRA-----GNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLKHCATVL 186
L F RA ++ LA YF + + HR+ +D MN +H +L
Sbjct: 172 L------FMARALLPGLSRHRLTDLADYFKISSEGAHRAFNDCVMNQICYEHMGKLL 222
>gi|239631939|ref|ZP_04674970.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|239526404|gb|EEQ65405.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
8700:2]
Length = 309
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 16/172 (9%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ + D+ETT +++ A+ V K+++ +F + +KP +++
Sbjct: 44 DYIVLDIETTGLSSVSDD--IIQLSALKVKEDKVID--TFDSYVKPS--TSIPENVVYIT 97
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEA--FAEIGKPAPVPVG 131
GIT VE+APE E+ K S G GHNI RFD I + E +
Sbjct: 98 GITNSTVENAPEIFEIMPKFVSFTEGMPLVGHNIIRFDIPFIVNNGFYYE-------DIE 150
Query: 132 MIDSLGVLTEK-FGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
+D+ + K F N+K+ TL YFG+ H +LDD + + V +H
Sbjct: 151 ALDTWRLAKNKDFPEPLKNLKLPTLKEYFGISGSSHNALDDCKTTITVYRHL 202
>gi|213965283|ref|ZP_03393480.1| DNA polymerase III, epsilon subunit [Corynebacterium amycolatum
SK46]
gi|213952135|gb|EEB63520.1| DNA polymerase III, epsilon subunit [Corynebacterium amycolatum
SK46]
Length = 529
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 10/169 (5%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V DLETT + ++E GAI K + +FS+ I P + + GI
Sbjct: 24 VVVDLETTGLKAKNDH--IIEIGAIKTRGGKTIG--TFSSFIDPG--MEIPDHITSLTGI 77
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
T VE+AP+ V + G VW HN +FD +++A ++G P P ++D+
Sbjct: 78 TTADVETAPQLGTVITQFLEFARGSVWVAHNA-KFDIGFLRQACTDLGLDWPSP-SVVDT 135
Query: 136 LGVLTEKFGR-RAGNMKMATLASYFGL-GQQKHRSLDDVRMNLEVLKHC 182
L + R + G+ K++ LA Y G + HR+LDD ++VL +
Sbjct: 136 LTLARRVLDRSQVGSFKLSQLARYVGSPNRPAHRALDDAIATVDVLHYL 184
>gi|395773391|ref|ZP_10453906.1| DNA polymerase III subunit epsilon [Streptomyces acidiscabies
84-104]
Length = 329
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 70/132 (53%), Gaps = 10/132 (7%)
Query: 51 ESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ + TL+ P +D V + G+T + +E AP F EVA++ L+GRV HN
Sbjct: 55 DHWYTLVNPERDPGPVWIH-----GLTSDVLEGAPLFAEVAEEFSRRLDGRVLVAHNA-V 108
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRS 168
FD I +A + APV + VL+++ G N K+ TLA++FG+ QQ+ H +
Sbjct: 109 FDWQMIAREYARAEQQAPVRQRLCTI--VLSKELGLPLPNHKLETLAAHFGVVQQRAHHA 166
Query: 169 LDDVRMNLEVLK 180
LDD R+ E +
Sbjct: 167 LDDARVLAEAFR 178
>gi|386846611|ref|YP_006264624.1| DNA polymerase III subunit epsilon [Actinoplanes sp. SE50/110]
gi|359834115|gb|AEV82556.1| DNA polymerase III subunit epsilon [Actinoplanes sp. SE50/110]
Length = 603
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 94/221 (42%), Gaps = 18/221 (8%)
Query: 2 DGFIPSQAAGTAEIVF--FDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLI 57
DG + A A+ F DLETT P G + E GA+ V R V + F TL+
Sbjct: 22 DGSVDPAAVSLADTTFVVLDLETTGGAPDGGG----ITEIGAVKV--RGGVPIGEFGTLV 75
Query: 58 KPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKE 117
P + + + GIT + AP E V + L G V HN +D +K
Sbjct: 76 NPGE--PLPPFITVLTGITEAMLRPAPPIETVLPALLEFLRGAVLVAHNA-PYDVGFLKA 132
Query: 118 AFAEIGKPAPVPVGMIDSLGVLTEKFGR-RAGNMKMATLASYF-GLGQQKHRSLDDVRMN 175
A A G P P P ++D+ + R N K+ TLA +F Q HR+LDD +
Sbjct: 133 ACARHGYPWPAP-RVLDTAALARRALTRDEVPNRKLGTLAQFFRSAVQPNHRALDDAKAT 191
Query: 176 LEVLKHCATVLFLESSLPNTFNSNLQSSLTVTTRSRSNGKL 216
++VL + L S +T ++ + VT RS L
Sbjct: 192 VDVLH--GLIERLGSFRVHTLGDAIEFAKAVTPAQRSRRHL 230
>gi|365825004|ref|ZP_09366964.1| hypothetical protein HMPREF0045_00600 [Actinomyces graevenitzii
C83]
gi|365259192|gb|EHM89187.1| hypothetical protein HMPREF0045_00600 [Actinomyces graevenitzii
C83]
Length = 582
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 80/170 (47%), Gaps = 14/170 (8%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V DLETT + + EFGA+ VC ++ L+ F +L P +AV + GI
Sbjct: 56 VVVDLETTGAQPGPDA--ITEFGAVRVCGGEI--LDEFGSLANPG--TAVPAYITMLTGI 109
Query: 76 TREAVESAPEFEEVADKIFSILN----GRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
T V SAP EEV S V HN RFD + ++ A G P V
Sbjct: 110 TTSMVASAPPLEEVLGDFMSWARLDEPDTVIVAHNA-RFDVSHLRSAAGAFGFDWP-SVR 167
Query: 132 MIDSLGVLTEKFGRR-AGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVL 179
++D+L + + + R N K++TLA + G HR+LDD R ++VL
Sbjct: 168 VLDTLKLTRKAWSRNDVANHKLSTLARFVGAQTTPTHRALDDARATVDVL 217
>gi|383935383|ref|ZP_09988819.1| DNA polymerase III subunit epsilon [Rheinheimera nanhaiensis
E407-8]
gi|383703477|dbj|GAB58910.1| DNA polymerase III subunit epsilon [Rheinheimera nanhaiensis
E407-8]
Length = 736
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 82/178 (46%), Gaps = 35/178 (19%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V D+ETT + R V+E GA+ + ++++ S+STL+ P+ + SR GI
Sbjct: 571 VVLDVETTGGKAGTDR--VIEIGAVKLQGGEVID--SYSTLLNPQ--RPIPSFISRLTGI 624
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVP-----V 130
+ V AP F ++A+K+ L G V+ HN +FD I+ FA + +P +P V
Sbjct: 625 SNSMVSDAPSFAQIANKLADFLQGAVFVAHNA-KFDYGFIRAEFARLEQPFDMPQLCTVV 683
Query: 131 GM--------IDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLK 180
M SLG L ++F + N HR+LDD E+LK
Sbjct: 684 NMRRYYPGLQSYSLGKLCQEFDIKLTN---------------HHRALDDATATAELLK 726
>gi|297562082|ref|YP_003681056.1| DNA polymerase III subunit epsilon [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296846530|gb|ADH68550.1| DNA polymerase III, epsilon subunit [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 595
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 84/173 (48%), Gaps = 15/173 (8%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
A V DLETT +G R + E GA+ V ++V F+TL+ P + + +
Sbjct: 24 ASFVVLDLETTGTSASGSR--ITEVGAVRVRGGEVVG--EFATLVNPG--TPIPANITLL 77
Query: 73 DGITREAVESAPEFEEVADKIFSILNGR---VWAGHNIRRFDCARIKEAFAEIGKPAP-V 128
GIT+ V SAP EEV ++ + L+ V HN FD +K A G P
Sbjct: 78 TGITQSMVASAPPMEEVLPRLLAFLDAEPDTVLVAHNA-PFDTGFLKAACERHGTDWPGY 136
Query: 129 PVGMIDSLGVLTEKFGR-RAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
PV +D+L + R N ++ATLA+YFG+ HR+L+D R + VL
Sbjct: 137 PV--VDTLRLARAVLARGETRNHRLATLAAYFGVPVAPNHRALEDARATVGVL 187
>gi|345010759|ref|YP_004813113.1| DNA polymerase III subunit epsilon [Streptomyces violaceusniger Tu
4113]
gi|344037108|gb|AEM82833.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
4113]
Length = 638
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 13/178 (7%)
Query: 5 IPSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK-DLS 63
+P+ + D+ET+ +R VL I V P + FSTL+ P D
Sbjct: 10 VPAMGDYAYDWALVDVETS--GLMARRDRVLSVAVITVGPDG-EQTGEFSTLLNPGCDPG 66
Query: 64 AVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
V + G+T E ++ AP F++VA +I ++L RV HN +FD + FA
Sbjct: 67 PV-----KVHGLTVERLQGAPTFDQVAGRIGAMLQDRVLVAHNA-QFDYDFLAHEFARAR 120
Query: 124 KPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLK 180
PV + L + G+MK+ TLA+++G+ QQ+ H +LDD R+ +L+
Sbjct: 121 TWLPVSQRLCTL--ALNRQVDPPTGDMKLGTLAAHYGIPQQRAHDALDDTRVLAGILR 176
>gi|297194325|ref|ZP_06911723.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
gi|297152225|gb|EFH31608.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
Length = 658
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 82/173 (47%), Gaps = 21/173 (12%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK-DLSAVALKSSRC 72
+ D+ET+ +R VL + V P + FSTL+ P D V +
Sbjct: 19 DWALVDVETS--GLVARRDRVLSVAVVTVGPDG-AQTGEFSTLLDPGCDPGPVHVH---- 71
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
G+T E + AP FEEVA +I +L GRV HN +FD + FA G PV
Sbjct: 72 -GLTAERLHGAPAFEEVAQRISQMLEGRVLVAHNA-QFDYDFLAHEFARAGVSLPV---- 125
Query: 133 IDSLGVLTEKFGRRAG----NMKMATLASYFGLGQ-QKHRSLDDVRMNLEVLK 180
+ + T RR ++++ TLA+++G+ Q + H +LDD R+ VL+
Sbjct: 126 --ARRLCTLALNRRVDPPTQDLRLGTLAAHYGVPQLRAHDALDDTRVLAGVLR 176
>gi|455647715|gb|EMF26647.1| DNA polymerase III subunit epsilon [Streptomyces gancidicus BKS
13-15]
Length = 641
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 17/171 (9%)
Query: 14 EIVFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK-DLSAVALKSS 70
+ D+ET+ VPRR VL I V P + FSTL+ P D V +
Sbjct: 23 DFALVDVETSGLVPRRD----RVLSVAVITVGPDG-EQTGEFSTLVNPGCDPGPVEVH-- 75
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
G+T + + AP FE+VA +I ++L RV HN +FD + FA PV
Sbjct: 76 ---GLTPDVLAGAPTFEQVAGRIGAMLQDRVLVAHNA-QFDYDFLAHEFARARMWLPVSQ 131
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLK 180
+ L + +MK+ TLA+++G+ QQ+ H +LDD R+ VL+
Sbjct: 132 RLCTL--ALNRQVDPPTDDMKLGTLAAHYGVPQQRAHDALDDTRVLAGVLR 180
>gi|329940730|ref|ZP_08290010.1| exonuclease [Streptomyces griseoaurantiacus M045]
gi|329300024|gb|EGG43922.1| exonuclease [Streptomyces griseoaurantiacus M045]
Length = 336
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 9/137 (6%)
Query: 45 RKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAG 104
R VE ++T+ +D V + G+T EA+E AP F EVA + + L GRV
Sbjct: 49 RGEVEDHWYTTVNPERDPGPVWIH-----GLTSEALEGAPLFHEVAGEFAARLTGRVLVA 103
Query: 105 HNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQ 164
HN FD + I +A G+ PV + L++ N K+ TLA++FG+ Q+
Sbjct: 104 HNA-VFDWSMIAREYARAGQEPPVRQRLCTI--ALSKALALPLPNHKLETLAAHFGVVQR 160
Query: 165 K-HRSLDDVRMNLEVLK 180
+ H +LDD R+ E +
Sbjct: 161 RAHHALDDARVLAEAFR 177
>gi|422874612|ref|ZP_16921097.1| DNA polymerase III PolC [Clostridium perfringens F262]
gi|380304253|gb|EIA16542.1| DNA polymerase III PolC [Clostridium perfringens F262]
Length = 1449
Score = 60.5 bits (145), Expect = 7e-07, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 11/168 (6%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
E V FD+ETT + ++E GA+ + ++V+ SFST + PK + K +
Sbjct: 434 EYVVFDIETTGFSSKNDK--IIEIGAVKLKDGEIVD--SFSTFVDPK--VNIPYKITELT 487
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
IT+ V P +EV K + V HN FD IK+ A++GK PV +
Sbjct: 488 SITQNMVNGQPTIDEVLPKFMEFVGDSVLVAHNA-AFDVGFIKKNLADMGKTLKNPV--M 544
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLK 180
D++ L +K+ +A + G+ + HR++DD + E+LK
Sbjct: 545 DTVP-LARYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILK 591
>gi|134299597|ref|YP_001113093.1| DNA polymerase III subunit epsilon [Desulfotomaculum reducens MI-1]
gi|134052297|gb|ABO50268.1| DNA polymerase III, epsilon subunit [Desulfotomaculum reducens
MI-1]
Length = 930
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 94/198 (47%), Gaps = 19/198 (9%)
Query: 34 VLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKI 93
++E G + + K E++SFSTLI+PK + V +K R GI ++ AP+ +EV I
Sbjct: 21 IIEIGLVKMVDGK--EIDSFSTLIRPKGILPVKIK--RLTGIKDHELQDAPKLQEVLPVI 76
Query: 94 FSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMA 153
+ GHN+ +FD F +P+ + D+L L++ A N ++
Sbjct: 77 LQFIADLPLVGHNV-KFDY-----DFLSTAVQSPLANPLYDTLE-LSKYLMPGASNHRLG 129
Query: 154 TLASYFGLG-QQKHRSLDDVR----MNLEVLKHCATV---LFLESSLPNTFNSNLQSSLT 205
L SY G+ +HR+LDD R + + +L C + L + S + + +L S+
Sbjct: 130 YLCSYLGIDIPNQHRALDDARGAAMLLIHLLNQCEEMEPELIWQLSQFLSKSGSLWHSVL 189
Query: 206 VTTRSRSNGKLPCREETS 223
T SR P R+ T+
Sbjct: 190 ETLSSRMIKMFPDRKITA 207
>gi|220931624|ref|YP_002508532.1| DNA polymerase III subunit alpha [Halothermothrix orenii H 168]
gi|219992934|gb|ACL69537.1| DNA polymerase III, alpha subunit [Halothermothrix orenii H 168]
Length = 1397
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 83/175 (47%), Gaps = 10/175 (5%)
Query: 6 PSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAV 65
P + +A V FDLETT + ++E GA+ V K+++ FS+ +KP + ++
Sbjct: 376 PDVSLESATFVVFDLETTGLNKFKNE--IIEIGAVKVKSGKVID--EFSSFVKPGE--SI 429
Query: 66 ALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKP 125
K + GIT E V AP+ E V ++G + HN FD ++ A + G+
Sbjct: 430 PNKITELTGITNEMVSRAPDIEGVIGDFLEFIDGSILVAHN-ADFDYGFLQVALKKTGQ- 487
Query: 126 APVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
+ ++D+L L+ N K+ TLA + + HR+++D R E+
Sbjct: 488 GDISYPVLDTL-TLSRALLPDLSNHKLNTLARHLNVRLDNHHRAVEDARATSEIF 541
>gi|422869808|ref|ZP_16916313.1| exonuclease, DNA polymerase III, epsilon subunit family
[Enterococcus faecalis TX1467]
gi|329569951|gb|EGG51706.1| exonuclease, DNA polymerase III, epsilon subunit family
[Enterococcus faecalis TX1467]
Length = 240
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 99/219 (45%), Gaps = 17/219 (7%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +++FG ++V K++ +F+T + P + ++S GI+
Sbjct: 17 DLETTGTDPTSDR--IIQFGCVLVQDGKIIA--NFATDVNPNQVVPKQIQS--LTGISNT 70
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP FE+VA I+ L ++ HN+ FD + G P P+ + ID++
Sbjct: 71 QVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-PLTIPAIDTVE- 127
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVLFLE--SSLPNT 195
L + F + +++ L+ GL + H++ D ++ E+L +L E SLP
Sbjct: 128 LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELL-----LLIQEKMKSLPLV 182
Query: 196 FNSNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQ 234
+ T R S E+ ++ P++ YQ
Sbjct: 183 TMEKIAELSQQTARETSTFIQQTYEQMKKQVTPLNPAYQ 221
>gi|152968358|ref|YP_001364142.1| DNA polymerase III subunit epsilon [Kineococcus radiotolerans
SRS30216]
gi|151362875|gb|ABS05878.1| DNA polymerase III, epsilon subunit [Kineococcus radiotolerans
SRS30216]
Length = 224
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 12/166 (7%)
Query: 17 FFDLETTVPR-RAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
D+ETT R G R V++ ++ R VE S+S+L+ P + GI
Sbjct: 28 VLDVETTGLRPETGDR--VVQIAVTLLDARGTVE-RSWSSLVDPHRDPG----PTHVHGI 80
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
T E + AP F ++A + +L+GRV+ HN RFD + G +PV
Sbjct: 81 TAERLAGAPTFAQLAPTVAGLLDGRVFVAHNA-RFDWKFVSAEMRAAG--VHLPVRQRLC 137
Query: 136 LGVLTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDDVRMNLEVLK 180
L ++ N+K+ATLA ++G+ Q + H + DD R+ +EVL+
Sbjct: 138 TWELAQRLDLPVENLKLATLAEHWGVRQLRPHDAEDDTRVLVEVLR 183
>gi|305680841|ref|ZP_07403648.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Corynebacterium matruchotii ATCC 14266]
gi|305659046|gb|EFM48546.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Corynebacterium matruchotii ATCC 14266]
Length = 2479
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 97/200 (48%), Gaps = 23/200 (11%)
Query: 3 GFIPSQ-AAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKP-K 60
G I SQ GT +V D+ETT A + ++E AI+V L +STLI P +
Sbjct: 2074 GQITSQYHPGTYAVV--DVETTGFSTADR---IVEL-AIVVLDDDGENLYEWSTLINPMR 2127
Query: 61 DLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFA 120
D+S A+ GIT + V AP F++VAD + ++L G+++ HN FD +K F
Sbjct: 2128 DISNGAIH-----GITAKDVAVAPTFDQVADDVAALLEGKIFVAHNA-IFDVRMLKSEFD 2181
Query: 121 EIG-KPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGL-GQQKHRSLDDVRMNLEV 178
+G K A + G ID+L + + + + ++ G+ +Q H +L D R +
Sbjct: 2182 RVGLKMAGLADGHIDTLRLAQNSLP--ISSRSLDSCLAFMGITNEQAHSALSDARATGRL 2239
Query: 179 LKHCATVLFLESSLPNTFNS 198
L FL LPN+ S
Sbjct: 2240 LTR-----FLLDELPNSAQS 2254
>gi|254479461|ref|ZP_05092788.1| DNA polymerase III, alpha subunit, Gram-positive type
[Carboxydibrachium pacificum DSM 12653]
gi|214034604|gb|EEB75351.1| DNA polymerase III, alpha subunit, Gram-positive type
[Carboxydibrachium pacificum DSM 12653]
Length = 1375
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 11/174 (6%)
Query: 7 SQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVA 66
S+A+ E V FD+ETT ++E GA+ + +K+V+ +F T + P+ ++
Sbjct: 380 SEASLEGEFVVFDIETTGLSNINDE--IIEIGAVKIKNKKIVD--TFETFVNPQ--IPIS 433
Query: 67 LKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPA 126
++ GI V+ AP EEV K G V HN FD + IK ++G
Sbjct: 434 SFITKLTGIDESMVKDAPLIEEVLPKFLEFAKGAVLVAHN-ANFDVSFIKSKAKKLG--L 490
Query: 127 PVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
V ++D+L L+ + N K+ TLA +F + HR+++D + E+
Sbjct: 491 TVENTVLDTLE-LSRHLYQDLKNYKLDTLAEFFEVKLLHHHRAVEDAKATAEIF 543
>gi|419550253|ref|ZP_14088767.1| DNA polymerase III subunit epsilon [Campylobacter coli 2688]
gi|380531084|gb|EIA56121.1| DNA polymerase III subunit epsilon [Campylobacter coli 2688]
Length = 253
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 18/167 (10%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+E+T + GQ +LE GA+ + + L E++ FS+LI+ K++ + GI +
Sbjct: 76 DIESTGGIKNGQ---ILEIGAVKI--KNLQEIDRFSSLIQVKEIPE---NITELTGIDLD 127
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP +V + L ++ HN+R FD I +A E G G++ + +
Sbjct: 128 MVKDAPSLTKVLNDFRLFLKDSIFVAHNVR-FDYGFISKALNECG------FGILLNRRI 180
Query: 139 LTEKFGR---RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
T +F + + K+ L G+ HR+L+D E+ KHC
Sbjct: 181 CTIEFAQCCIESPRYKLDVLKELLGIKNAHHRALNDALAAAEIFKHC 227
>gi|419587096|ref|ZP_14123046.1| DNA polymerase III subunit epsilon [Campylobacter coli 67-8]
gi|380565342|gb|EIA88088.1| DNA polymerase III subunit epsilon [Campylobacter coli 67-8]
Length = 253
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 18/167 (10%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+E+T + GQ +LE GA+ + + L E++ FS+L++ K++ + GI +
Sbjct: 76 DIESTGGIKNGQ---ILEIGAVKI--KNLQEIDRFSSLVQVKEIPE---NITELTGINLD 127
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP +V + L ++ HN+R FD I +A E G G++ + +
Sbjct: 128 MVKDAPSLTKVLNDFRLFLKDSIFVAHNVR-FDYGFISKALNECG------FGILLNRRI 180
Query: 139 LTEKFGR---RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
T +F + + K+ L G+ HR+L+D E+ KHC
Sbjct: 181 CTIEFAQCCIESPKYKLDVLKELLGIKNAHHRALNDALAAAEIFKHC 227
>gi|271964195|ref|YP_003338391.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
gi|270507370|gb|ACZ85648.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
Length = 574
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 79/167 (47%), Gaps = 13/167 (7%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V FDLETT AG+ + E GA+ V R L F TL+ P S + S GI
Sbjct: 22 VVFDLETTG-VSAGEHA-ITEIGAVKV--RGGEVLGEFGTLVDPG--SPIPPFISVLTGI 75
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPV-PVGMID 134
T V +AP+ E V G HN FD IK A A G P P PV +D
Sbjct: 76 TDTMVVAAPKIESVLPSFLEFAEGTTLVAHNAG-FDLGFIKAACAAHGYPPPAHPV--VD 132
Query: 135 SLGVLTEKFGRR--AGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
++ VL K R A N K++TLA F + +HR+L D + ++VL
Sbjct: 133 TV-VLARKLLTRDEAPNCKLSTLARIFSKTEPRHRALADAQATVDVL 178
>gi|20807845|ref|NP_623016.1| DNA polymerase III PolC [Thermoanaerobacter tengcongensis MB4]
gi|24418364|sp|Q8RA32.1|DPO3_THETN RecName: Full=DNA polymerase III PolC-type; Short=PolIII
gi|20516408|gb|AAM24620.1| DNA polymerase III alpha subunit, the Gram-positive type
[Thermoanaerobacter tengcongensis MB4]
Length = 1401
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 11/174 (6%)
Query: 7 SQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVA 66
S+A+ E V FD+ETT ++E GA+ + +K+V+ +F T + P+ ++
Sbjct: 380 SEASLEGEFVVFDIETTGLSNINDE--IIEIGAVKIKNKKIVD--TFETFVNPQ--IPIS 433
Query: 67 LKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPA 126
++ GI V+ AP EEV K G V HN FD + IK ++G
Sbjct: 434 SFITKLTGIDESMVKDAPLIEEVLPKFLEFAKGAVLVAHN-ANFDVSFIKSKAKKLG--L 490
Query: 127 PVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
V ++D+L L+ + N K+ TLA +F + HR+++D + E+
Sbjct: 491 TVENTVLDTLE-LSRHLYQDLKNYKLDTLAEFFEVKLLHHHRAVEDAKATAEIF 543
>gi|385799864|ref|YP_005836268.1| DNA polymerase III catalytic subunit, PolC type [Halanaerobium
praevalens DSM 2228]
gi|309389228|gb|ADO77108.1| DNA polymerase III catalytic subunit, PolC type [Halanaerobium
praevalens DSM 2228]
Length = 1404
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 81/177 (45%), Gaps = 16/177 (9%)
Query: 7 SQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAI-IVCPRKLVELESFSTLIKPKDLSAV 65
S + E + FDLETT + ++E GA+ +K+ E ESF I P +
Sbjct: 384 SASLAETEFIVFDLETTGLNPSQHE--IIEIGAVKYQGGKKIAEFESF---INPG--VRI 436
Query: 66 ALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFA--EIG 123
K + GI V++AP E+V + V HN FD I+ A EI
Sbjct: 437 PAKITEITGINDRMVKNAPGLEKVINDFIEFAGTGVLVAHN-ADFDYGFIRTALEKLEIE 495
Query: 124 KPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
K ++D+LG L+ + + N K+ TLA YFG+ + HR+LDD EVL
Sbjct: 496 KD---DYTVLDTLG-LSRAVVKDSKNHKLNTLAKYFGVDLENHHRALDDANATAEVL 548
>gi|419567455|ref|ZP_14104614.1| DNA polymerase III subunit epsilon [Campylobacter coli 1417]
gi|380548443|gb|EIA72348.1| DNA polymerase III subunit epsilon [Campylobacter coli 1417]
Length = 253
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 18/167 (10%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+E+T + GQ +LE GA+ + + L E++ FS+L++ K++ + GI +
Sbjct: 76 DIESTGGIKNGQ---ILEIGAVKI--KNLQEIDRFSSLVQVKEIPE---NITELTGINLD 127
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP +V + L ++ HN+R FD I +A E G G++ + +
Sbjct: 128 MVKDAPSLTKVLNDFRLFLKDSIFVAHNVR-FDYGFISKALNECG------FGILLNRRI 180
Query: 139 LTEKFGR---RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
T +F + + K+ L G+ HR+L+D E+ KHC
Sbjct: 181 CTIEFAQCCIESPRYKLDVLKELLGIKNAHHRALNDALAAAEIFKHC 227
>gi|341820012|emb|CCC56236.1| DNA-directed DNA polymerase III epsilon subunit [Weissella
thailandensis fsh4-2]
Length = 970
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 9/143 (6%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R + +++ V K++ FSTLI P + ++ + GI E
Sbjct: 38 DLETT--RTTSESGRIIQIAIAFVQNNKIIN--QFSTLINPHE--SIPRNVVQLTGIDSE 91
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V AP FE+VA+ I ++L+G ++ HN+ FD + F +G P + V ID++
Sbjct: 92 MVTGAPAFEDVAESIHTMLSGTIFVAHNV-NFDLPFLNAEFQRVGMPV-LDVIAIDTV-T 148
Query: 139 LTEKFGRRAGNMKMATLASYFGL 161
L++ A ++ L SY L
Sbjct: 149 LSQIVWPTAPGFRLVDLTSYLSL 171
>gi|302773125|ref|XP_002969980.1| hypothetical protein SELMODRAFT_440920 [Selaginella moellendorffii]
gi|300162491|gb|EFJ29104.1| hypothetical protein SELMODRAFT_440920 [Selaginella moellendorffii]
Length = 1208
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 88/194 (45%), Gaps = 25/194 (12%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLV--ELESFSTLIKPKDLSAVALKSSRC 72
I+ FDLETT R AG R ++EF A R L + + S L+ P V +
Sbjct: 177 IIVFDLETTGFRAAGDR--IIEFAA-----RDLAGGDRSTISALVNPG--RTVPYLITAV 227
Query: 73 DGITREAVES--APEFEEVADKIFSILNGR-------VWAGHNIRRFDCARIKEAFAEIG 123
GIT + V P ++EV I + R + HN +RFD + + F G
Sbjct: 228 TGITNQMVNKPHVPSWKEVGPSIIQFVESRRKGDEPVILVAHNGKRFDVPFLLKEFQSCG 287
Query: 124 KPAPVPVGMIDSLGVLTE---KFGRRAGNMKMATLASYFGL--GQQKHRSLDDVRMNLEV 178
P +DS+ + E KFG ++K++ L +GL ++ HR++ DV M V
Sbjct: 288 IQVPEWWLFLDSMPLAREAKKKFGYNWRSLKLSVLHEAYGLHSTERAHRAMADVNMLASV 347
Query: 179 LKHCATVLFLESSL 192
L+ + L L +S+
Sbjct: 348 LEAIVSELQLPASV 361
>gi|305433007|ref|ZP_07402163.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli JV20]
gi|419536383|ref|ZP_14075864.1| DNA polymerase III subunit epsilon [Campylobacter coli 111-3]
gi|419538353|ref|ZP_14077712.1| DNA polymerase III subunit epsilon [Campylobacter coli 90-3]
gi|419540553|ref|ZP_14079787.1| DNA polymerase III subunit epsilon [Campylobacter coli Z163]
gi|419541678|ref|ZP_14080817.1| DNA polymerase III subunit epsilon [Campylobacter coli 2548]
gi|419544955|ref|ZP_14083892.1| DNA polymerase III subunit epsilon [Campylobacter coli 2553]
gi|419548309|ref|ZP_14086938.1| DNA polymerase III subunit epsilon [Campylobacter coli 2685]
gi|419552892|ref|ZP_14091175.1| DNA polymerase III subunit epsilon [Campylobacter coli 2692]
gi|419554247|ref|ZP_14092392.1| DNA polymerase III subunit epsilon [Campylobacter coli 2698]
gi|419557051|ref|ZP_14095013.1| DNA polymerase III subunit epsilon [Campylobacter coli 84-2]
gi|419558329|ref|ZP_14096199.1| DNA polymerase III subunit epsilon [Campylobacter coli 80352]
gi|419560954|ref|ZP_14098585.1| DNA polymerase III subunit epsilon [Campylobacter coli 86119]
gi|419562194|ref|ZP_14099714.1| DNA polymerase III subunit epsilon [Campylobacter coli 1091]
gi|419564027|ref|ZP_14101412.1| DNA polymerase III subunit epsilon [Campylobacter coli 1098]
gi|419567043|ref|ZP_14104281.1| DNA polymerase III subunit epsilon [Campylobacter coli 1148]
gi|419570376|ref|ZP_14107423.1| DNA polymerase III subunit epsilon [Campylobacter coli 7--1]
gi|419572617|ref|ZP_14109519.1| DNA polymerase III subunit epsilon [Campylobacter coli 132-6]
gi|419574475|ref|ZP_14111216.1| DNA polymerase III subunit epsilon [Campylobacter coli 1891]
gi|419574775|ref|ZP_14111475.1| DNA polymerase III subunit epsilon [Campylobacter coli 1909]
gi|419577744|ref|ZP_14114288.1| DNA polymerase III subunit epsilon [Campylobacter coli 59-2]
gi|419578661|ref|ZP_14115089.1| DNA polymerase III subunit epsilon [Campylobacter coli 1948]
gi|419581929|ref|ZP_14118207.1| DNA polymerase III subunit epsilon [Campylobacter coli 1957]
gi|419583772|ref|ZP_14119937.1| DNA polymerase III subunit epsilon [Campylobacter coli 1961]
gi|419585630|ref|ZP_14121679.1| DNA polymerase III subunit epsilon [Campylobacter coli 202/04]
gi|419588483|ref|ZP_14124305.1| DNA polymerase III subunit epsilon [Campylobacter coli 317/04]
gi|419590635|ref|ZP_14126000.1| DNA polymerase III subunit epsilon [Campylobacter coli 37/05]
gi|419593284|ref|ZP_14128510.1| DNA polymerase III subunit epsilon [Campylobacter coli LMG 9854]
gi|419594811|ref|ZP_14129930.1| DNA polymerase III subunit epsilon [Campylobacter coli LMG 23336]
gi|419597524|ref|ZP_14132498.1| DNA polymerase III subunit epsilon [Campylobacter coli LMG 23341]
gi|419599265|ref|ZP_14134129.1| DNA polymerase III subunit epsilon [Campylobacter coli LMG 23342]
gi|419601370|ref|ZP_14136085.1| DNA polymerase III subunit epsilon [Campylobacter coli LMG 23344]
gi|419602286|ref|ZP_14136865.1| DNA polymerase III subunit epsilon [Campylobacter coli 151-9]
gi|419604864|ref|ZP_14139320.1| DNA polymerase III subunit epsilon [Campylobacter coli LMG 9853]
gi|419606646|ref|ZP_14141006.1| DNA polymerase III subunit epsilon [Campylobacter coli LMG 9860]
gi|419608957|ref|ZP_14143133.1| DNA polymerase III subunit epsilon [Campylobacter coli H6]
gi|419610419|ref|ZP_14144482.1| DNA polymerase III subunit epsilon [Campylobacter coli H8]
gi|419613056|ref|ZP_14146914.1| DNA polymerase III subunit epsilon [Campylobacter coli H9]
gi|419614268|ref|ZP_14148054.1| DNA polymerase III subunit epsilon [Campylobacter coli H56]
gi|419616458|ref|ZP_14150105.1| DNA polymerase III subunit epsilon [Campylobacter coli Z156]
gi|304443708|gb|EFM36365.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli JV20]
gi|380516319|gb|EIA42452.1| DNA polymerase III subunit epsilon [Campylobacter coli Z163]
gi|380518151|gb|EIA44250.1| DNA polymerase III subunit epsilon [Campylobacter coli 111-3]
gi|380518301|gb|EIA44399.1| DNA polymerase III subunit epsilon [Campylobacter coli 90-3]
gi|380524503|gb|EIA50113.1| DNA polymerase III subunit epsilon [Campylobacter coli 2553]
gi|380524540|gb|EIA50148.1| DNA polymerase III subunit epsilon [Campylobacter coli 2548]
gi|380527603|gb|EIA52964.1| DNA polymerase III subunit epsilon [Campylobacter coli 2685]
gi|380530204|gb|EIA55295.1| DNA polymerase III subunit epsilon [Campylobacter coli 2692]
gi|380533158|gb|EIA58114.1| DNA polymerase III subunit epsilon [Campylobacter coli 2698]
gi|380533992|gb|EIA58842.1| DNA polymerase III subunit epsilon [Campylobacter coli 84-2]
gi|380536470|gb|EIA61098.1| DNA polymerase III subunit epsilon [Campylobacter coli 86119]
gi|380539559|gb|EIA63920.1| DNA polymerase III subunit epsilon [Campylobacter coli 80352]
gi|380541595|gb|EIA65853.1| DNA polymerase III subunit epsilon [Campylobacter coli 1091]
gi|380543194|gb|EIA67413.1| DNA polymerase III subunit epsilon [Campylobacter coli 1098]
gi|380544707|gb|EIA68719.1| DNA polymerase III subunit epsilon [Campylobacter coli 1148]
gi|380547335|gb|EIA71257.1| DNA polymerase III subunit epsilon [Campylobacter coli 7--1]
gi|380549545|gb|EIA73337.1| DNA polymerase III subunit epsilon [Campylobacter coli 1891]
gi|380550432|gb|EIA74094.1| DNA polymerase III subunit epsilon [Campylobacter coli 132-6]
gi|380554440|gb|EIA77902.1| DNA polymerase III subunit epsilon [Campylobacter coli 1909]
gi|380556397|gb|EIA79648.1| DNA polymerase III subunit epsilon [Campylobacter coli 59-2]
gi|380557590|gb|EIA80797.1| DNA polymerase III subunit epsilon [Campylobacter coli 1957]
gi|380559250|gb|EIA82412.1| DNA polymerase III subunit epsilon [Campylobacter coli 1948]
gi|380561834|gb|EIA84742.1| DNA polymerase III subunit epsilon [Campylobacter coli 202/04]
gi|380561978|gb|EIA84875.1| DNA polymerase III subunit epsilon [Campylobacter coli 1961]
gi|380570186|gb|EIA92616.1| DNA polymerase III subunit epsilon [Campylobacter coli 317/04]
gi|380570442|gb|EIA92866.1| DNA polymerase III subunit epsilon [Campylobacter coli 37/05]
gi|380571172|gb|EIA93579.1| DNA polymerase III subunit epsilon [Campylobacter coli LMG 9854]
gi|380573389|gb|EIA95536.1| DNA polymerase III subunit epsilon [Campylobacter coli LMG 23341]
gi|380574974|gb|EIA97062.1| DNA polymerase III subunit epsilon [Campylobacter coli LMG 23336]
gi|380575589|gb|EIA97663.1| DNA polymerase III subunit epsilon [Campylobacter coli LMG 23342]
gi|380579172|gb|EIB00977.1| DNA polymerase III subunit epsilon [Campylobacter coli LMG 9853]
gi|380581276|gb|EIB03003.1| DNA polymerase III subunit epsilon [Campylobacter coli 151-9]
gi|380581691|gb|EIB03407.1| DNA polymerase III subunit epsilon [Campylobacter coli LMG 23344]
gi|380584699|gb|EIB06104.1| DNA polymerase III subunit epsilon [Campylobacter coli H6]
gi|380586804|gb|EIB08077.1| DNA polymerase III subunit epsilon [Campylobacter coli LMG 9860]
gi|380588704|gb|EIB09809.1| DNA polymerase III subunit epsilon [Campylobacter coli H9]
gi|380590003|gb|EIB11036.1| DNA polymerase III subunit epsilon [Campylobacter coli H8]
gi|380592879|gb|EIB13731.1| DNA polymerase III subunit epsilon [Campylobacter coli H56]
gi|380595496|gb|EIB16226.1| DNA polymerase III subunit epsilon [Campylobacter coli Z156]
Length = 253
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 18/167 (10%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+E+T + GQ +LE GA+ + + L E++ FS+L++ K++ + GI +
Sbjct: 76 DIESTGGIKNGQ---ILEIGAVKI--KNLQEIDRFSSLVQVKEIPE---NITELTGINLD 127
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP +V + L ++ HN+R FD I +A E G G++ + +
Sbjct: 128 MVKDAPSLTKVLNDFRLFLKDSIFVAHNVR-FDYGFISKALNECG------FGILLNRRI 180
Query: 139 LTEKFGR---RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
T +F + + K+ L G+ HR+L+D E+ KHC
Sbjct: 181 CTIEFAQCCIESPRYKLDVLKELLGIKNAHHRALNDALAAAEIFKHC 227
>gi|386387233|ref|ZP_10072273.1| DNA polymerase III subunit epsilon [Streptomyces tsukubaensis
NRRL18488]
gi|385665303|gb|EIF89006.1| DNA polymerase III subunit epsilon [Streptomyces tsukubaensis
NRRL18488]
Length = 322
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 10/132 (7%)
Query: 51 ESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ + TL+ P +D V + G+TRE + AP F E+AD L RV HN
Sbjct: 31 DQWYTLVNPERDPGPVWIH-----GLTREVLAGAPLFAEIADAFAERLADRVLVAHNA-L 84
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRS 168
FD + I +A G+ APV + L ++ N K+ +LA++FG+ QQ+ H +
Sbjct: 85 FDWSMIAREYARAGRTAPVSRRLCTI--ALAKELSLPLPNHKLESLAAHFGVVQQRAHHA 142
Query: 169 LDDVRMNLEVLK 180
LDD R+ E +
Sbjct: 143 LDDARVLAEAFR 154
>gi|225021279|ref|ZP_03710471.1| hypothetical protein CORMATOL_01291 [Corynebacterium matruchotii ATCC
33806]
gi|224946012|gb|EEG27221.1| hypothetical protein CORMATOL_01291 [Corynebacterium matruchotii ATCC
33806]
Length = 2493
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 97/200 (48%), Gaps = 23/200 (11%)
Query: 3 GFIPSQ-AAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKP-K 60
G I SQ GT +V D+ETT A + ++E AI+V L +STLI P +
Sbjct: 2088 GQITSQYHPGTYAVV--DVETTGFSTADR---IVEL-AIVVLDDDGENLYEWSTLINPMR 2141
Query: 61 DLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFA 120
D+S A+ GIT + V AP F++VAD + ++L G+++ HN FD +K F
Sbjct: 2142 DISNGAIH-----GITAKDVAVAPTFDQVADDVAALLEGKIFVAHNA-IFDVRMLKSEFD 2195
Query: 121 EIG-KPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGL-GQQKHRSLDDVRMNLEV 178
+G K A + G ID+L + + + + ++ G+ +Q H +L D R +
Sbjct: 2196 RVGLKMAGLADGHIDTLRLAQNSLP--ISSRSLDSCLAFMGITNEQAHSALSDARATGRL 2253
Query: 179 LKHCATVLFLESSLPNTFNS 198
L FL LPN+ S
Sbjct: 2254 LTR-----FLLDELPNSARS 2268
>gi|57168588|ref|ZP_00367721.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli
RM2228]
gi|57020093|gb|EAL56770.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter coli
RM2228]
Length = 251
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 18/167 (10%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+E+T + GQ +LE GA+ + + L E++ FS+L++ K++ + GI +
Sbjct: 74 DIESTGGIKNGQ---ILEIGAVKI--KNLQEIDRFSSLVQVKEIPE---NITELTGINLD 125
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP +V + L ++ HN+R FD I +A E G G++ + +
Sbjct: 126 MVKDAPSLTKVLNDFRLFLKDSIFVAHNVR-FDYGFISKALNECG------FGILLNRRI 178
Query: 139 LTEKFGR---RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
T +F + + K+ L G+ HR+L+D E+ KHC
Sbjct: 179 CTIEFAQCCIESPRYKLDVLKELLGIKNAHHRALNDALAAAEIFKHC 225
>gi|357398629|ref|YP_004910554.1| DNA polymerase III subunit epsilon [Streptomyces cattleya NRRL 8057
= DSM 46488]
gi|386354667|ref|YP_006052913.1| DNA polymerase III subunit epsilon [Streptomyces cattleya NRRL 8057
= DSM 46488]
gi|337765038|emb|CCB73747.1| DNA polymerase III subunit epsilon [Streptomyces cattleya NRRL 8057
= DSM 46488]
gi|365805175|gb|AEW93391.1| DNA polymerase III subunit epsilon [Streptomyces cattleya NRRL 8057
= DSM 46488]
Length = 352
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 89/199 (44%), Gaps = 36/199 (18%)
Query: 48 VELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNI 107
VE +S + +D V + G+T E + AP F +VA+++ L GRV HN
Sbjct: 65 VEDHWYSPVNPQRDPGPVWIH-----GLTTEVLRDAPLFAQVAEELTGRLAGRVLVAHNA 119
Query: 108 RRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-H 166
FD + + FA G+ APV + VL ++ G N K+ +LA+++G+ Q++ H
Sbjct: 120 -VFDWSMLAREFARAGRSAPVEHRLCTI--VLAKELGLPLPNHKLESLAAHYGVVQRRAH 176
Query: 167 RSLDDVRMNLEVLKHCATVLFLESSLPNTFNSNLQSSLTVTTRSRSNGKLP---CREETS 223
+LDD R+ L F +LQ + R LP CR T
Sbjct: 177 HALDDARV-----------------LAEAFRPSLQRAAAAGLR------LPLHACRPLTE 213
Query: 224 RKSPPISLGYQRSAVPYTR 242
S P ++G QRS P R
Sbjct: 214 WSSGP-AIGRQRSVAPGGR 231
>gi|422719831|ref|ZP_16776454.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0017]
gi|315032870|gb|EFT44802.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0017]
Length = 929
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 13/217 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +++FG ++V K++ +F+T + P + ++S GI+
Sbjct: 17 DLETTGTDPTSDR--IIQFGCVLVQDGKIIA--NFATDVNPNQVVPKQIQS--LTGISNT 70
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP FE+VA I+ L ++ HN+ FD + G P P+ + ID++
Sbjct: 71 QVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-PLTIPAIDTVE- 127
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVLFLESSLPNTFN 197
L + F + +++ L+ GL + H++ D ++ E+L + SLP
Sbjct: 128 LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKM---KSLPLVTM 184
Query: 198 SNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQ 234
+ T R S E+ ++ P++ YQ
Sbjct: 185 EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNPAYQ 221
>gi|255972155|ref|ZP_05422741.1| DNA polymerase III [Enterococcus faecalis T1]
gi|255963173|gb|EET95649.1| DNA polymerase III [Enterococcus faecalis T1]
Length = 929
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 13/217 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +++FG ++V K++ +F+T + P + ++S GI+
Sbjct: 17 DLETTGTDPTSDR--IIQFGCVLVQDGKIIA--NFATDVNPNQVVPKQIQS--LTGISNT 70
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP FE+VA I+ L ++ HN+ FD + G P P+ + ID++
Sbjct: 71 QVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-PLTIPAIDTVE- 127
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVLFLESSLPNTFN 197
L + F + +++ L+ GL + H++ D ++ E+L + SLP
Sbjct: 128 LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKM---KSLPLVTM 184
Query: 198 SNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQ 234
+ T R S E+ ++ P++ YQ
Sbjct: 185 EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNPAYQ 221
>gi|340360259|ref|ZP_08682729.1| hypothetical protein HMPREF9062_1854 [Actinomyces sp. oral taxon
448 str. F0400]
gi|339883460|gb|EGQ73303.1| hypothetical protein HMPREF9062_1854 [Actinomyces sp. oral taxon
448 str. F0400]
Length = 543
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 82/180 (45%), Gaps = 20/180 (11%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V DLETT A + E GA+ V R E FSTL+ P A+ + + GI
Sbjct: 11 VVVDLETT--GGAAGAHAITEIGAVRV--RGGTVEEEFSTLVDPG--RAIPAQITVLTGI 64
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWA-------GHNIRRFDCARIKEAFAEIGKPAPV 128
T V AP V + + S L W+ HN R FD ++ A E+ P
Sbjct: 65 TNAMVAGAPS---VGEALVSFLEWARWSEADTVLVAHNAR-FDVGHLRRASRELALPWRE 120
Query: 129 PVGMIDSLGVLTEKFGRR-AGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLKHCATVL 186
P ++D+L + +GR N ++ TLAS+ G + HR+LDD R ++VL VL
Sbjct: 121 PT-VLDTLALARRTWGRSDVPNHRLGTLASFVGSPTRPTHRALDDARATVDVLHAALQVL 179
>gi|256853717|ref|ZP_05559082.1| DNA polymerase III [Enterococcus faecalis T8]
gi|307291048|ref|ZP_07570934.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0411]
gi|422684239|ref|ZP_16742482.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX4000]
gi|256710660|gb|EEU25703.1| DNA polymerase III [Enterococcus faecalis T8]
gi|306497897|gb|EFM67428.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0411]
gi|315030986|gb|EFT42918.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX4000]
Length = 929
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 13/217 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +++FG ++V K++ +F+T + P + ++S GI+
Sbjct: 17 DLETTGTDPTSDR--IIQFGCVLVQDGKIIA--NFATDVNPNQVVPKQIQS--LTGISNT 70
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP FE+VA I+ L ++ HN+ FD + G P P+ + ID++
Sbjct: 71 QVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-PLTIPAIDTVE- 127
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVLFLESSLPNTFN 197
L + F + +++ L+ GL + H++ D ++ E+L + SLP
Sbjct: 128 LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKM---KSLPLVTM 184
Query: 198 SNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQ 234
+ T R S E+ ++ P++ YQ
Sbjct: 185 EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNPAYQ 221
>gi|422732373|ref|ZP_16788713.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0645]
gi|315161735|gb|EFU05752.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0645]
Length = 929
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 13/217 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +++FG ++V K++ +F+T + P + ++S GI+
Sbjct: 17 DLETTGTDPTSDR--IIQFGCVLVQDGKIIA--NFATDVNPNQVVPKQIQS--LTGISNT 70
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP FE+VA I+ L ++ HN+ FD + G P P+ + ID++
Sbjct: 71 QVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-PLTIPAIDTVE- 127
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVLFLESSLPNTFN 197
L + F + +++ L+ GL + H++ D ++ E+L + SLP
Sbjct: 128 LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKM---KSLPLVTM 184
Query: 198 SNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQ 234
+ T R S E+ ++ P++ YQ
Sbjct: 185 EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNPAYQ 221
>gi|257416585|ref|ZP_05593579.1| DNA polymerase III [Enterococcus faecalis ARO1/DG]
gi|257158413|gb|EEU88373.1| DNA polymerase III [Enterococcus faecalis ARO1/DG]
Length = 929
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 13/217 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +++FG ++V K++ +F+T + P + ++S GI+
Sbjct: 17 DLETTGTDPTSDR--IIQFGCVLVQDGKIIA--NFATDVNPNQVVPKQIQS--LTGISNT 70
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP FE+VA I+ L ++ HN+ FD + G P P+ + ID++
Sbjct: 71 QVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-PLTIPAIDTVE- 127
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVLFLESSLPNTFN 197
L + F + +++ L+ GL + H++ D ++ E+L + SLP
Sbjct: 128 LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKM---KSLPLVTM 184
Query: 198 SNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQ 234
+ T R S E+ ++ P++ YQ
Sbjct: 185 EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNPAYQ 221
>gi|229549451|ref|ZP_04438176.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis ATCC 29200]
gi|256956656|ref|ZP_05560827.1| DNA polymerase III [Enterococcus faecalis DS5]
gi|257419833|ref|ZP_05596827.1| DNA polymerase III [Enterococcus faecalis T11]
gi|300861259|ref|ZP_07107346.1| helicase, DnaQ family exonuclease/DinG family [Enterococcus
faecalis TUSoD Ef11]
gi|312953414|ref|ZP_07772254.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0102]
gi|384513772|ref|YP_005708865.1| DNA-directed DNA polymerase III subunit epsilon [Enterococcus
faecalis OG1RF]
gi|422693172|ref|ZP_16751186.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0031]
gi|422701382|ref|ZP_16759223.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX1342]
gi|422725994|ref|ZP_16782451.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0312]
gi|430359629|ref|ZP_19425881.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis OG1X]
gi|229305688|gb|EEN71684.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis ATCC 29200]
gi|256947152|gb|EEU63784.1| DNA polymerase III [Enterococcus faecalis DS5]
gi|257161661|gb|EEU91621.1| DNA polymerase III [Enterococcus faecalis T11]
gi|300850298|gb|EFK78048.1| helicase, DnaQ family exonuclease/DinG family [Enterococcus
faecalis TUSoD Ef11]
gi|310628623|gb|EFQ11906.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0102]
gi|315152082|gb|EFT96098.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0031]
gi|315159114|gb|EFU03131.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0312]
gi|315170323|gb|EFU14340.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX1342]
gi|327535661|gb|AEA94495.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis OG1RF]
gi|429513253|gb|ELA02840.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis OG1X]
Length = 929
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 13/217 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +++FG ++V K++ +F+T + P + ++S GI+
Sbjct: 17 DLETTGTDPTSDR--IIQFGCVLVQDGKIIA--NFATDVNPNQVVPKQIQS--LTGISNT 70
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP FE+VA I+ L ++ HN+ FD + G P P+ + ID++
Sbjct: 71 QVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-PLTIPAIDTVE- 127
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVLFLESSLPNTFN 197
L + F + +++ L+ GL + H++ D ++ E+L + SLP
Sbjct: 128 LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKM---KSLPLVTM 184
Query: 198 SNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQ 234
+ T R S E+ ++ P++ YQ
Sbjct: 185 EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNPAYQ 221
>gi|422697807|ref|ZP_16755738.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX1346]
gi|315173642|gb|EFU17659.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX1346]
Length = 929
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 13/217 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +++FG ++V K++ +F+T + P + ++S GI+
Sbjct: 17 DLETTGTDPTSDR--IIQFGCVLVQDGKIIA--NFATDVNPNQVVPKQIQS--LTGISNT 70
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP FE+VA I+ L ++ HN+ FD + G P P+ + ID++
Sbjct: 71 QVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-PLTIPAIDTVE- 127
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVLFLESSLPNTFN 197
L + F + +++ L+ GL + H++ D ++ E+L + SLP
Sbjct: 128 LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKM---KSLPLVTM 184
Query: 198 SNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQ 234
+ T R S E+ ++ P++ YQ
Sbjct: 185 EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNPAYQ 221
>gi|422709920|ref|ZP_16767266.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0027]
gi|315035644|gb|EFT47576.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0027]
Length = 929
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 13/217 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +++FG ++V K++ +F+T + P + ++S GI+
Sbjct: 17 DLETTGTDPTSDR--IIQFGCVLVQDGKIIA--NFATDVNPNQVVPKQIQS--LTGISNT 70
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP FE+VA I+ L ++ HN+ FD + G P P+ + ID++
Sbjct: 71 QVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-PLTIPAIDTVE- 127
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVLFLESSLPNTFN 197
L + F + +++ L+ GL + H++ D ++ E+L + SLP
Sbjct: 128 LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKM---KSLPLVTM 184
Query: 198 SNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQ 234
+ T R S E+ ++ P++ YQ
Sbjct: 185 EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNPAYQ 221
>gi|256963550|ref|ZP_05567721.1| DNA polymerase III [Enterococcus faecalis HIP11704]
gi|307271490|ref|ZP_07552762.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0855]
gi|256954046|gb|EEU70678.1| DNA polymerase III [Enterococcus faecalis HIP11704]
gi|306511762|gb|EFM80760.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0855]
Length = 929
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 13/217 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +++FG ++V K++ +F+T + P + ++S GI+
Sbjct: 17 DLETTGTDPTSDR--IIQFGCVLVQDGKIIA--NFATDVNPNQVVPKQIQS--LTGISNT 70
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP FE+VA I+ L ++ HN+ FD + G P P+ + ID++
Sbjct: 71 QVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-PLTIPAIDTVE- 127
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVLFLESSLPNTFN 197
L + F + +++ L+ GL + H++ D ++ E+L + SLP
Sbjct: 128 LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKM---KSLPLVTM 184
Query: 198 SNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQ 234
+ T R S E+ ++ P++ YQ
Sbjct: 185 EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNPAYQ 221
>gi|345021387|ref|ZP_08785000.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Ornithinibacillus scapharcae TW25]
Length = 973
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 76/162 (46%), Gaps = 9/162 (5%)
Query: 11 GTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
G V DLETT Q ++E G ++V ++V+ FSTL+ P ++ +
Sbjct: 46 GMNRFVVLDLETTGNSSTNQD-KIIEVGMVVVENDQIVD--EFSTLLHPG--KSIPPFIT 100
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
+ GI + V+ AP F++VAD I IL HN+ FD + IGK A +
Sbjct: 101 KLTGIQDDDVKEAPTFDKVADTIVDILENSYLIAHNV-PFDLGFLNAELTAIGK-ARLNN 158
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDD 171
+ID++ LT +A K+ LA Y + HR+L D
Sbjct: 159 PVIDTVE-LTRILYPQAPGFKLGILAEYLDISHDNPHRALSD 199
>gi|257090540|ref|ZP_05584901.1| DNA polymerase III epsilon subunit [Enterococcus faecalis CH188]
gi|422688267|ref|ZP_16746425.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0630]
gi|256999352|gb|EEU85872.1| DNA polymerase III epsilon subunit [Enterococcus faecalis CH188]
gi|315578691|gb|EFU90882.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0630]
Length = 929
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 13/217 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +++FG ++V K++ +F+T + P + ++S GI+
Sbjct: 17 DLETTGTDPTSDR--IIQFGCVLVQDGKIIA--NFATDVNPNQVVPKQIQS--LTGISNT 70
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP FE+VA I+ L ++ HN+ FD + G P P+ + ID++
Sbjct: 71 QVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYDFLARELVRCGTP-PLTIPAIDTVE- 127
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVLFLESSLPNTFN 197
L + F + +++ L+ GL + H++ D ++ E+L + SLP
Sbjct: 128 LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKM---KSLPLVTM 184
Query: 198 SNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQ 234
+ T R S E+ ++ P++ YQ
Sbjct: 185 EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNPAYQ 221
>gi|256763069|ref|ZP_05503649.1| DNA polymerase III [Enterococcus faecalis T3]
gi|257079582|ref|ZP_05573943.1| DNA polymerase III [Enterococcus faecalis JH1]
gi|294779459|ref|ZP_06744857.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
faecalis PC1.1]
gi|307270866|ref|ZP_07552153.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX4248]
gi|312903707|ref|ZP_07762881.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0635]
gi|397700569|ref|YP_006538357.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
D32]
gi|422736826|ref|ZP_16793088.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX1341]
gi|256684320|gb|EEU24015.1| DNA polymerase III [Enterococcus faecalis T3]
gi|256987612|gb|EEU74914.1| DNA polymerase III [Enterococcus faecalis JH1]
gi|294453465|gb|EFG21869.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
faecalis PC1.1]
gi|306512779|gb|EFM81424.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX4248]
gi|310632899|gb|EFQ16182.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0635]
gi|315166434|gb|EFU10451.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX1341]
gi|397337208|gb|AFO44880.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
D32]
Length = 929
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 13/217 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +++FG ++V K++ +F+T + P + ++S GI+
Sbjct: 17 DLETTGTDPTSDR--IIQFGCVLVQDGKIIA--NFATDVNPNQVVPKQIQS--LTGISNT 70
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP FE+VA I+ L ++ HN+ FD + G P P+ + ID++
Sbjct: 71 QVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-PLTIPAIDTVE- 127
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVLFLESSLPNTFN 197
L + F + +++ L+ GL + H++ D ++ E+L + SLP
Sbjct: 128 LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKM---KSLPLVTM 184
Query: 198 SNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQ 234
+ T R S E+ ++ P++ YQ
Sbjct: 185 EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNPAYQ 221
>gi|307287736|ref|ZP_07567779.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0109]
gi|422703714|ref|ZP_16761534.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX1302]
gi|306501474|gb|EFM70777.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0109]
gi|315164835|gb|EFU08852.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX1302]
Length = 929
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 13/217 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +++FG ++V K++ +F+T + P + ++S GI+
Sbjct: 17 DLETTGTDPTSDR--IIQFGCVLVQDGKIIA--NFATDVNPNQVVPKQIQS--LTGISNT 70
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP FE+VA I+ L ++ HN+ FD + G P P+ + ID++
Sbjct: 71 QVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-PLTIPAIDTVE- 127
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVLFLESSLPNTFN 197
L + F + +++ L+ GL + H++ D ++ E+L + SLP
Sbjct: 128 LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKM---KSLPLVTM 184
Query: 198 SNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQ 234
+ T R S E+ ++ P++ YQ
Sbjct: 185 EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNPAYQ 221
>gi|430370051|ref|ZP_19428850.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis M7]
gi|429515600|gb|ELA05111.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis M7]
Length = 923
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 13/217 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +++FG ++V K++ +F+T + P + ++S GI+
Sbjct: 11 DLETTGTDPTSDR--IIQFGCVLVQDGKIIA--NFATDVNPNQVVPKQIQS--LTGISNT 64
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP FE+VA I+ L ++ HN+ FD + G P P+ + ID++
Sbjct: 65 QVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-PLTIPAIDTVE- 121
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVLFLESSLPNTFN 197
L + F + +++ L+ GL + H++ D ++ E+L + SLP
Sbjct: 122 LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKM---KSLPLVTM 178
Query: 198 SNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQ 234
+ T R S E+ ++ P++ YQ
Sbjct: 179 EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNPAYQ 215
>gi|257087406|ref|ZP_05581767.1| DNA polymerase III [Enterococcus faecalis D6]
gi|422724797|ref|ZP_16781273.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX2137]
gi|424675732|ref|ZP_18112629.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
599]
gi|256995436|gb|EEU82738.1| DNA polymerase III [Enterococcus faecalis D6]
gi|315025444|gb|EFT37376.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX2137]
gi|402350368|gb|EJU85272.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
599]
Length = 929
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 13/217 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +++FG ++V K++ +F+T + P + ++S GI+
Sbjct: 17 DLETTGTDPTSDR--IIQFGCVLVQDGKIIA--NFATDVNPNQVVPKQIQS--LTGISNT 70
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP FE+VA I+ L ++ HN+ FD + G P P+ + ID++
Sbjct: 71 QVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-PLTIPAIDTVE- 127
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVLFLESSLPNTFN 197
L + F + +++ L+ GL + H++ D ++ E+L + SLP
Sbjct: 128 LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKM---KSLPLVTM 184
Query: 198 SNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQ 234
+ T R S E+ ++ P++ YQ
Sbjct: 185 EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNPAYQ 221
>gi|302546442|ref|ZP_07298784.1| putative DNA polymerase III epsilon subunit [Streptomyces
hygroscopicus ATCC 53653]
gi|302464060|gb|EFL27153.1| putative DNA polymerase III epsilon subunit [Streptomyces
himastatinicus ATCC 53653]
Length = 335
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 10/132 (7%)
Query: 51 ESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ + TL+ P +D V + G+TRE + AP F ++A L+GRV HN
Sbjct: 58 DRWYTLVNPQRDPGPVWIH-----GLTRETLSDAPLFPDIATAFAERLDGRVLVAHNA-A 111
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRS 168
FD + I FA APV + L+++ G N K+ TLA+++G+ Q++ H +
Sbjct: 112 FDWSMIAREFARSKTEAPVRQRLCTI--ALSKELGLPLANHKLETLAAHYGVVQERAHHA 169
Query: 169 LDDVRMNLEVLK 180
LDD R+ E +
Sbjct: 170 LDDARVLAETFR 181
>gi|302799380|ref|XP_002981449.1| hypothetical protein SELMODRAFT_420926 [Selaginella moellendorffii]
gi|300150989|gb|EFJ17637.1| hypothetical protein SELMODRAFT_420926 [Selaginella moellendorffii]
Length = 1254
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 87/193 (45%), Gaps = 25/193 (12%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLV--ELESFSTLIKPKDLSAVALKSSRC 72
I+ FDLETT R AG R ++EF A R L + + S L+ P V +
Sbjct: 177 IIVFDLETTGFRAAGDR--IIEFAA-----RDLAGGDRSTISALVNPG--RTVPYLITAV 227
Query: 73 DGITREAVES--APEFEEVADKIFSILNGR-------VWAGHNIRRFDCARIKEAFAEIG 123
GIT + V P ++EV I + R + HN +RFD + + F G
Sbjct: 228 TGITNQMVNKPHVPSWKEVGPSIIQFVESRRKGDEPVILVAHNGKRFDVPFLLKEFQSCG 287
Query: 124 KPAPVPVGMIDSLGVLTE---KFGRRAGNMKMATLASYFGL--GQQKHRSLDDVRMNLEV 178
P +DS+ + E KFG ++K++ L +GL ++ HR++ DV M V
Sbjct: 288 IQVPEWWLFLDSMPLARETKKKFGYNWRSLKLSVLHEAYGLHSTERAHRAMADVNMLASV 347
Query: 179 LKHCATVLFLESS 191
L+ + L L +S
Sbjct: 348 LEAIVSELQLPAS 360
>gi|384519199|ref|YP_005706504.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
62]
gi|323481332|gb|ADX80771.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
62]
Length = 929
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 13/217 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +++FG ++V K++ +F+T + P + ++S GI+
Sbjct: 17 DLETTGTDPTSDR--IIQFGCVLVQDGKIIA--NFATDVNPNQVVPKQIQS--LTGISNT 70
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP FE+VA I+ L ++ HN+ FD + G P P+ + ID++
Sbjct: 71 QVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-PLTIPAIDTVE- 127
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVLFLESSLPNTFN 197
L + F + +++ L+ GL + H++ D ++ E+L + SLP
Sbjct: 128 LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKM---KSLPLVTM 184
Query: 198 SNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQ 234
+ T R S E+ ++ P++ YQ
Sbjct: 185 EKIAELSQQTARETSTFIQQTYEQMKKQVTPLNPAYQ 221
>gi|163848613|ref|YP_001636657.1| DNA polymerase III subunit epsilon [Chloroflexus aurantiacus
J-10-fl]
gi|222526548|ref|YP_002571019.1| DNA polymerase III subunit epsilon [Chloroflexus sp. Y-400-fl]
gi|163669902|gb|ABY36268.1| DNA polymerase III, epsilon subunit [Chloroflexus aurantiacus
J-10-fl]
gi|222450427|gb|ACM54693.1| DNA polymerase III, epsilon subunit [Chloroflexus sp. Y-400-fl]
Length = 278
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 22/179 (12%)
Query: 1 MDGFIPSQAAGTAEIVFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLV------ELESF 53
M G Q ++FFD+ETT + +AG R +C ++ E+
Sbjct: 1 MTGIELQQPITDVPLIFFDVETTGLEIQAGHR----------ICEVAMLRWEHGQEVGRI 50
Query: 54 STLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCA 113
+TLI P+ + ++++ +G+ + +AP F ++A ++ + V HN+ FD +
Sbjct: 51 NTLINPE--RELDPQAAQINGLQPAELNNAPLFTDIAPQVVQLSQNAVRIAHNLP-FDES 107
Query: 114 RIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDV 172
+ G P P +D+L L + G R G++ +A LA+ FGL HR++DDV
Sbjct: 108 FLNMELCRAGYP-PFTGPALDTLE-LARRLGIRRGSLSLAALATTFGLPAPTHRAMDDV 164
>gi|419546679|ref|ZP_14085429.1| DNA polymerase III subunit epsilon [Campylobacter coli 2680]
gi|380521977|gb|EIA47679.1| DNA polymerase III subunit epsilon [Campylobacter coli 2680]
Length = 253
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 18/167 (10%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+E+T + GQ +LE GA+ + + L E++ FS+L++ K++ + GI +
Sbjct: 76 DIESTGGIKNGQ---ILEIGAVKI--KNLQEIDRFSSLVQVKEIPE---NITELTGIDLD 127
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP +V + L ++ HN+R FD I +A E G G++ + +
Sbjct: 128 MVKDAPSLTKVLNDFRLFLKDSIFVAHNVR-FDYGFISKALNECG------FGILLNRRI 180
Query: 139 LTEKFGR---RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
T +F + + K+ L G+ HR+L+D E+ KHC
Sbjct: 181 CTIEFAQCCIESPRYKLDVLKELLGIKNAHHRALNDALAAAEIFKHC 227
>gi|418468676|ref|ZP_13039453.1| DNA polymerase III, partial [Streptomyces coelicoflavus ZG0656]
gi|371550718|gb|EHN78089.1| DNA polymerase III, partial [Streptomyces coelicoflavus ZG0656]
Length = 643
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 84/175 (48%), Gaps = 25/175 (14%)
Query: 14 EIVFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK-DLSAVALKSS 70
E D+ET+ VPRR VL + + P + FSTL+ P D V
Sbjct: 28 EWALVDVETSGLVPRRD----RVLSVAVVTLGPDG-AQTGEFSTLLDPGCDPGPV----- 77
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
G+T E + AP F++VA++I ++L GRV HN +FD + FA PV
Sbjct: 78 HVHGLTAERLRGAPAFDQVAERIGALLEGRVLVAHNA-QFDYDFLAHEFARARLRLPV-- 134
Query: 131 GMIDSLGVLTEKFGRRA----GNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLK 180
+ + T RR ++++ TLA+++G+ Q K H +LDD R+ VL+
Sbjct: 135 ----ARRLCTLALNRRVDPPTDDLRLGTLAAHYGVPQLKAHDALDDTRVLAGVLR 185
>gi|257084662|ref|ZP_05579023.1| DNA polymerase III [Enterococcus faecalis Fly1]
gi|256992692|gb|EEU79994.1| DNA polymerase III [Enterococcus faecalis Fly1]
Length = 929
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 96/217 (44%), Gaps = 13/217 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +++FG ++V K++ +F+T + P AV + GI+
Sbjct: 17 DLETTGTDPTSDR--IIQFGCVLVQDGKIIA--NFATDVNPN--QAVPKQIQSLTGISNT 70
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP FE+VA I+ L ++ HN+ FD + G P P+ + ID++
Sbjct: 71 QVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-PLTIPAIDTVE- 127
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVLFLESSLPNTFN 197
L + F + +++ L+ GL + H++ D ++ E+L + SLP
Sbjct: 128 LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKM---KSLPLVTM 184
Query: 198 SNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQ 234
+ T R S E+ ++ P++ YQ
Sbjct: 185 EKIAELSQQTARETSAFIQQTYEQMKKQVTPLNPAYQ 221
>gi|399546332|ref|YP_006559640.1| Excinuclease cho [Marinobacter sp. BSs20148]
gi|399161664|gb|AFP32227.1| Excinuclease cho [Marinobacter sp. BSs20148]
Length = 483
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 82/181 (45%), Gaps = 19/181 (10%)
Query: 6 PSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAV 65
PS+ T F DLETT A R + E G I R ++ + TL+ PK + +
Sbjct: 4 PSRHLKTTTFAFLDLETTGGSAATDR--ITEIG--IQFWRAGECVDQWQTLVNPK--TRI 57
Query: 66 ALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKP 125
+ + GI+ V AP FE++AD++ L+G V+ HN RFD +K F +G+
Sbjct: 58 SPFIEQLTGISNAMVADAPLFEDIADELEQRLDGVVFVAHNA-RFDYGFVKGEFRRLGR- 115
Query: 126 APVPVGMIDSLGVLTEKFGRRAG----NMKMATLASYFGLGQ-QKHRSLDDVRMNLEVLK 180
M + + T K RR M L GL Q Q+HR++ DV L +
Sbjct: 116 ------MFVAKVLCTVKLSRRLYPEFRRHNMDALIERHGLQQVQRHRAMGDVAAMLGFFE 169
Query: 181 H 181
H
Sbjct: 170 H 170
>gi|126665661|ref|ZP_01736642.1| hypothetical protein MELB17_03812 [Marinobacter sp. ELB17]
gi|126629595|gb|EBA00212.1| hypothetical protein MELB17_03812 [Marinobacter sp. ELB17]
Length = 483
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 81/181 (44%), Gaps = 19/181 (10%)
Query: 6 PSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAV 65
PSQ T F DLETT A R + E G I R + + TL+ PK + +
Sbjct: 4 PSQHLKTTTFAFLDLETTGGSVATDR--ITEIG--IQFWRAGECVGQWQTLVNPK--TRI 57
Query: 66 ALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKP 125
+ + GI+ V AP FE++AD++ L+G V+ HN RFD +K F +G+
Sbjct: 58 SPFIEQLTGISNAMVADAPLFEDIADELEQRLDGVVFVAHNA-RFDYGFVKGEFRRLGR- 115
Query: 126 APVPVGMIDSLGVLTEKFGRRAG----NMKMATLASYFGLGQ-QKHRSLDDVRMNLEVLK 180
M + + T K RR M L GL Q Q+HR++ DV L +
Sbjct: 116 ------MFVAKVLCTVKLSRRLYPEFRRHNMDALIERHGLQQVQRHRAMGDVAAMLGFFE 169
Query: 181 H 181
H
Sbjct: 170 H 170
>gi|291530449|emb|CBK96034.1| DNA polymerase III catalytic subunit, PolC type [Eubacterium
siraeum 70/3]
Length = 1605
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 11/169 (6%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+I+ FD+ETT A +R + E GA+ + R + ++ FST + P + + +
Sbjct: 590 DIIVFDIETTGLHPANER--ITEIGAVKL--RNMEIVDRFSTFVNP--MMPIPSNITELT 643
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT + V AP E+VA F G + +FD + I+ A +GK PV +
Sbjct: 644 GITDDMVADAPT-EDVAVSDFMAFCGNSPVCAHNAKFDVSFIRSAATRMGKSFDNPV--V 700
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDDVRMNLEVLKH 181
D+L + + N K+ T+A YF LG HR++ D M + H
Sbjct: 701 DTLSIAKAAL-KGIKNYKLDTIAKYFKLGDFDHHRAVADAEMLCMIYMH 748
>gi|377809744|ref|YP_005004965.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Pediococcus claussenii ATCC BAA-344]
gi|361056485|gb|AEV95289.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Pediococcus claussenii ATCC BAA-344]
Length = 926
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 82/165 (49%), Gaps = 9/165 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT G+ +++ G + ++V+ +S+ + P+ +V +R GIT+E
Sbjct: 10 DLETTGNDMNGEN-RIIQIGCTFIENGRIVD--EYSSDVNPE--RSVPAMITRLTGITQE 64
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V++AP+F ++A K+F++L G + HN+ FD + + F G P+ + ID++ +
Sbjct: 65 RVDTAPKFSDIAGKVFAMLQGTNFVAHNV-NFDFPFLNDEFMRSGYPS-LDTPAIDTVTL 122
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDDVRMNLEVLKHC 182
F + G ++ L Y G+ H + D R VL H
Sbjct: 123 SQVIFAKAPG-YRLRDLTHYLGIEHLNPHSANSDSRATAYVLIHL 166
>gi|154250388|ref|YP_001411213.1| DNA polymerase III PolC [Fervidobacterium nodosum Rt17-B1]
gi|154154324|gb|ABS61556.1| DNA polymerase III, alpha subunit [Fervidobacterium nodosum
Rt17-B1]
Length = 1390
Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats.
Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 13/166 (7%)
Query: 16 VFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
V DLETT + R+ + ++E GA+ K+++ F T ++P L+ KS G
Sbjct: 384 VVLDLETTGLNPRSDE---IMEIGAVKTRDGKVID--EFHTFVRPNKLNK---KSLNITG 435
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
IT + ++ AP+ +V K+ + + HN FD +K ++ G P ID
Sbjct: 436 ITEDMLKDAPDIMQVLPKLLEFIKDSILVAHNA-DFDMTFLKNILSKSGIEFNPP--YID 492
Query: 135 SLGVLTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDDVRMNLEVL 179
+L + + + + L +FGLG Q HR+LDD R+ + V
Sbjct: 493 TLRLSQALLRNKIKSFSLDKLVDHFGLGAFQHHRALDDARVTVNVF 538
>gi|302518301|ref|ZP_07270643.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
gi|302427196|gb|EFK99011.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
Length = 329
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 69/132 (52%), Gaps = 10/132 (7%)
Query: 51 ESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ + TL+ P +D V + G+T E +E AP F E+A+++ L+GRV HN
Sbjct: 53 DHWYTLVNPERDPGPVWIH-----GLTSEVLEGAPLFPEIAEELSRRLDGRVLVAHNA-V 106
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRS 168
FD + + +A G APV + L ++ N K+ TLA++FG+ Q++ H +
Sbjct: 107 FDWSMLAREYARAGITAPVRRRLCTI--ALAKELALPLPNHKLETLAAHFGVEQRRAHHA 164
Query: 169 LDDVRMNLEVLK 180
LDD R+ E +
Sbjct: 165 LDDARVLAEAFR 176
>gi|318057718|ref|ZP_07976441.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG]
gi|318079748|ref|ZP_07987080.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF]
gi|333028027|ref|ZP_08456091.1| putative DNA polymerase III subunit epsilon [Streptomyces sp.
Tu6071]
gi|332747879|gb|EGJ78320.1| putative DNA polymerase III subunit epsilon [Streptomyces sp.
Tu6071]
Length = 331
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 69/132 (52%), Gaps = 10/132 (7%)
Query: 51 ESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ + TL+ P +D V + G+T E +E AP F E+A+++ L+GRV HN
Sbjct: 51 DHWYTLVNPERDPGPVWIH-----GLTSEVLEGAPLFPEIAEELSRRLDGRVLVAHNA-V 104
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRS 168
FD + + +A G APV + L ++ N K+ TLA++FG+ Q++ H +
Sbjct: 105 FDWSMLAREYARAGITAPVRRRLCTI--ALAKELALPLPNHKLETLAAHFGVEQRRAHHA 162
Query: 169 LDDVRMNLEVLK 180
LDD R+ E +
Sbjct: 163 LDDARVLAEAFR 174
>gi|424686651|ref|ZP_18123317.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV25]
gi|402367046|gb|EJV01397.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV25]
Length = 929
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 13/217 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +++FG ++V K++ +F+T + P + ++S GI+
Sbjct: 17 DLETTGTDPTSDR--IIQFGCVLVQDGKIIA--NFATDVNPNQVVPKQIQS--LTGISNT 70
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP FE+VA I+ L ++ HN+ FD + G P P+ + ID++
Sbjct: 71 QVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-PLTIPAIDTVE- 127
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVLFLESSLPNTFN 197
L + F + +++ L+ GL + H++ D ++ E+L + SLP
Sbjct: 128 LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKM---KSLPLVTM 184
Query: 198 SNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQ 234
+ T R S E+ ++ P++ YQ
Sbjct: 185 EKIAELSQQTARETSAFIQQTYEQMKKQVTPLNPAYQ 221
>gi|257082037|ref|ZP_05576398.1| DNA polymerase III [Enterococcus faecalis E1Sol]
gi|256990067|gb|EEU77369.1| DNA polymerase III [Enterococcus faecalis E1Sol]
Length = 929
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 13/217 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +++FG ++V K++ +F+T + P + ++S GI+
Sbjct: 17 DLETTGTDPTSDR--IIQFGCVLVQDGKIIA--NFATDVNPNQVVPKQIQS--LTGISNT 70
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP FE+VA I+ L ++ HN+ FD + G P P+ + ID++
Sbjct: 71 QVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-PLTIPAIDTVE- 127
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVLFLESSLPNTFN 197
L + F + +++ L+ GL + H++ D ++ E+L + SLP
Sbjct: 128 LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKM---KSLPLVTM 184
Query: 198 SNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQ 234
+ T R S E+ ++ P++ YQ
Sbjct: 185 EKIAELSQQTARETSAFIQQTYEQMKKQVTPLNPAYQ 221
>gi|422729573|ref|ZP_16785974.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0012]
gi|315150174|gb|EFT94190.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0012]
Length = 929
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 13/217 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +++FG ++V K++ +F+T + P + ++S GI+
Sbjct: 17 DLETTGTDPTSDR--IIQFGCVLVQDGKIIA--NFATDVNPNQVVPKQIQS--LTGISNT 70
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP FE+VA I+ L ++ HN+ FD + G P P+ + ID++
Sbjct: 71 QVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-PLTIPAIDTVE- 127
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVLFLESSLPNTFN 197
L + F + +++ L+ GL + H++ D ++ E+L + SLP
Sbjct: 128 LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKM---KSLPLVTM 184
Query: 198 SNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQ 234
+ T R S E+ ++ P++ YQ
Sbjct: 185 EKIAELSQQTARETSAFIQQTYEQMKKQVTPLNPAYQ 221
>gi|227553912|ref|ZP_03983959.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis HH22]
gi|227176898|gb|EEI57870.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis HH22]
Length = 929
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 13/217 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +++FG ++V K++ +F+T + P + ++S GI+
Sbjct: 17 DLETTGTDPTSDR--IIQFGCVLVQDGKIIA--NFATDVNPNQVVPKQIQS--LTGISNT 70
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP FE+VA I+ L ++ HN+ FD + G P P+ + ID++
Sbjct: 71 QVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-PLTIPAIDTVE- 127
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVLFLESSLPNTFN 197
L + F + +++ L+ GL + H++ D ++ E+L + SLP
Sbjct: 128 LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKM---KSLPLVTM 184
Query: 198 SNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQ 234
+ T R S E+ ++ P++ YQ
Sbjct: 185 EKIAELSQQTARETSAFIQQTYEQMKKQVTPLNPAYQ 221
>gi|344998861|ref|YP_004801715.1| DNA polymerase III subunit epsilon [Streptomyces sp. SirexAA-E]
gi|344314487|gb|AEN09175.1| DNA polymerase III, epsilon subunit [Streptomyces sp. SirexAA-E]
Length = 333
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 89/193 (46%), Gaps = 38/193 (19%)
Query: 51 ESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ + TL+ P +D V + G+T EA+E AP F EVA ++ L+GRV HN
Sbjct: 51 DHWYTLVNPERDPGPVWIH-----GLTSEALEGAPLFPEVAAQLSERLDGRVLVAHNA-A 104
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRS 168
FD + + +A APV + L+++ N K+ +LA++FG+ QQ+ H +
Sbjct: 105 FDWSMLAREYARAAITAPVRQRLCTI--ALSKELRLPLPNHKLESLAAHFGVVQQRAHHA 162
Query: 169 LDDVRMNLEVLKHCATVLFLESSLPNTFNSNLQSSLTVTTRSRSNGKLP---CREETSRK 225
LDD R+ L F +L ++ +R +LP CR T
Sbjct: 163 LDDARV-----------------LAEAFRPSLHAA------ARGGVRLPLLECRPLTEWT 199
Query: 226 SPPIS--LGYQRS 236
P++ +GYQ S
Sbjct: 200 DSPVAPRVGYQPS 212
>gi|256617168|ref|ZP_05474014.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
gi|307277210|ref|ZP_07558314.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX2134]
gi|256596695|gb|EEU15871.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
gi|295113409|emb|CBL32046.1| DnaQ family exonuclease/DinG family helicase, putative
[Enterococcus sp. 7L76]
gi|306506140|gb|EFM75306.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX2134]
Length = 929
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 13/217 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +++FG ++V K++ +F+T + P + ++S GI+
Sbjct: 17 DLETTGTDPTSDR--IIQFGCVLVQDGKIIA--NFATDVNPNQVVPKQIQS--LTGISNT 70
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP FE+VA I+ L ++ HN+ FD + G P P+ + ID++
Sbjct: 71 QVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-PLTIPAIDTVE- 127
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVLFLESSLPNTFN 197
L + F + +++ L+ GL + H++ D ++ E+L + SLP
Sbjct: 128 LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKM---KSLPLVTM 184
Query: 198 SNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQ 234
+ T R S E+ ++ P++ YQ
Sbjct: 185 EKIAELSQQTARETSAFIQQTYEQMKKQVTPLNPAYQ 221
>gi|229545209|ref|ZP_04433934.1| conserved hypothetical protein [Enterococcus faecalis TX1322]
gi|229309754|gb|EEN75741.1| conserved hypothetical protein [Enterococcus faecalis TX1322]
Length = 175
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 80/162 (49%), Gaps = 10/162 (6%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +++FG ++V K++ +F+T + P + ++S GI+
Sbjct: 17 DLETTGTDPTSDR--IIQFGCVLVQDGKIIA--NFATDVNPNQVVPKQIQS--LTGISNT 70
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP FE+VA I+ L ++ HN+ FD + G P P+ + ID++
Sbjct: 71 QVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-PLTIPAIDTVE- 127
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVL 179
L + F + +++ L+ GL + H++ D ++ E+L
Sbjct: 128 LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELL 169
>gi|29376872|ref|NP_816026.1| DNA polymerase III, subunit epsilon/ATP-dependent helicase DinG
[Enterococcus faecalis V583]
gi|227519901|ref|ZP_03949950.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis TX0104]
gi|422714924|ref|ZP_16771648.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0309A]
gi|422717399|ref|ZP_16774084.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0309B]
gi|424676258|ref|ZP_18113135.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV103]
gi|424680566|ref|ZP_18117369.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV116]
gi|424683143|ref|ZP_18119897.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV129]
gi|424689584|ref|ZP_18126155.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV31]
gi|424694056|ref|ZP_18130465.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV37]
gi|424697635|ref|ZP_18133957.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV41]
gi|424700132|ref|ZP_18136330.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV62]
gi|424703027|ref|ZP_18139164.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV63]
gi|424710147|ref|ZP_18143613.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV65]
gi|424717894|ref|ZP_18147168.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV68]
gi|424721118|ref|ZP_18150216.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV72]
gi|424725024|ref|ZP_18153951.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV73]
gi|424727261|ref|ZP_18155894.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV81]
gi|424742049|ref|ZP_18170383.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV85]
gi|424751181|ref|ZP_18179213.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV93]
gi|29344337|gb|AAO82096.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
[Enterococcus faecalis V583]
gi|227072695|gb|EEI10658.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis TX0104]
gi|315574388|gb|EFU86579.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0309B]
gi|315580138|gb|EFU92329.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0309A]
gi|402353864|gb|EJU88686.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV116]
gi|402357517|gb|EJU92224.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV103]
gi|402365909|gb|EJV00323.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV129]
gi|402367669|gb|EJV02008.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV31]
gi|402371838|gb|EJV05982.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV37]
gi|402374508|gb|EJV08524.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV62]
gi|402375166|gb|EJV09158.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV41]
gi|402383634|gb|EJV17229.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV68]
gi|402383859|gb|EJV17438.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV65]
gi|402385682|gb|EJV19214.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV63]
gi|402392314|gb|EJV25578.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV72]
gi|402392534|gb|EJV25792.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV73]
gi|402397251|gb|EJV30279.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV81]
gi|402401037|gb|EJV33837.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV85]
gi|402405735|gb|EJV38319.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV93]
Length = 929
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 13/217 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +++FG ++V K++ +F+T + P + ++S GI+
Sbjct: 17 DLETTGTDPTSDR--IIQFGCVLVQDGKIIA--NFATDVNPNQVVPKQIQS--LTGISNT 70
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP FE+VA I+ L ++ HN+ FD + G P P+ + ID++
Sbjct: 71 QVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-PLTIPAIDTVE- 127
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVLFLESSLPNTFN 197
L + F + +++ L+ GL + H++ D ++ E+L + SLP
Sbjct: 128 LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKM---KSLPLVTM 184
Query: 198 SNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQ 234
+ T R S E+ ++ P++ YQ
Sbjct: 185 EKIAELSQQTARETSAFIQQTYEQMKKQVTPLNPAYQ 221
>gi|408826173|ref|ZP_11211063.1| DNA polymerase III subunit epsilon [Streptomyces somaliensis DSM
40738]
Length = 300
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 10/132 (7%)
Query: 51 ESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ + TL+ P +D V R G+T + + AP F EVA + L+GRV HN
Sbjct: 28 DHWYTLVNPERDPGPV-----RIHGLTGDMLADAPLFAEVAAEFSERLDGRVLVAHNA-Y 81
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRS 168
FD I +A + APV + L ++ NMK+ +LA++FG+ QQ+ H +
Sbjct: 82 FDWTMIAREYARAARTAPVRRRLCTM--ALAKELALPLPNMKLESLAAHFGVRQQRAHHA 139
Query: 169 LDDVRMNLEVLK 180
LDD R+ E +
Sbjct: 140 LDDARVLAEAFR 151
>gi|422695886|ref|ZP_16753864.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX4244]
gi|315146656|gb|EFT90672.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX4244]
Length = 929
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 13/217 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +++FG ++V K++ +F+T + P + ++S GI+
Sbjct: 17 DLETTGTDPTSDR--IIQFGCVLVQEGKIIA--NFATDVNPNQVVPKQIQS--LTGISNT 70
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP FE+VA I+ L ++ HN+ FD + G P P+ + ID++
Sbjct: 71 QVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-PLTIPAIDTVE- 127
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVLFLESSLPNTFN 197
L + F + +++ L+ GL + H++ D ++ E+L + SLP
Sbjct: 128 LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKM---KSLPLVTM 184
Query: 198 SNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQ 234
+ T R S E+ ++ P++ YQ
Sbjct: 185 EKIAELSQQTARETSAFIQQTYEQMKKQVTPLNPAYQ 221
>gi|441147579|ref|ZP_20964568.1| DNA polymerase III subunit epsilon [Streptomyces rimosus subsp.
rimosus ATCC 10970]
gi|440620191|gb|ELQ83225.1| DNA polymerase III subunit epsilon [Streptomyces rimosus subsp.
rimosus ATCC 10970]
Length = 612
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 71/144 (49%), Gaps = 10/144 (6%)
Query: 39 AIIVCPRKLVELESFSTLIKPK-DLSAVALKSSRCDGITREAVESAPEFEEVADKIFSIL 97
A++ R FSTL+ P D V + G+ E + AP F++VA KI +L
Sbjct: 41 AVVTVGRDGERTGEFSTLLNPGCDPGPVDVH-----GLPSERLRGAPTFDQVAGKIAEML 95
Query: 98 NGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLAS 157
GRV+ HN +FD + FA PV + L+ + +MK+ TLA+
Sbjct: 96 QGRVFVAHNA-QFDYDFLAHEFARARMWLPVSQRLCTL--ALSRQVDPPTDDMKLGTLAA 152
Query: 158 YFGLGQQK-HRSLDDVRMNLEVLK 180
++G+ QQ+ H +LDD R+ +L+
Sbjct: 153 HYGVPQQRAHDALDDTRVLAGILR 176
>gi|424760609|ref|ZP_18188221.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
R508]
gi|402403302|gb|EJV35981.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
R508]
Length = 929
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 13/217 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +++FG ++V K++ +F+T + P + ++S GI+
Sbjct: 17 DLETTGTDPTSDR--IIQFGCVLVQDGKIIA--NFATDVNPNQVVPKQIQS--LTGISNT 70
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP FE+VA I+ L ++ HN+ FD + G P P+ + ID++
Sbjct: 71 QVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-PLTIPAIDTVE- 127
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVLFLESSLPNTFN 197
L + F + +++ L+ GL + H++ D ++ E+L + SLP
Sbjct: 128 LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKM---KSLPLVTM 184
Query: 198 SNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQ 234
+ T R S E+ ++ P++ YQ
Sbjct: 185 EKIAELSQQTARETSAFIQQTYEQMKKQVTPLNPAYQ 221
>gi|257421980|ref|ZP_05598970.1| DNA polymerase III subunit epsilon [Enterococcus faecalis X98]
gi|422706950|ref|ZP_16764647.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0043]
gi|257163804|gb|EEU93764.1| DNA polymerase III subunit epsilon [Enterococcus faecalis X98]
gi|315155308|gb|EFT99324.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0043]
Length = 929
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 13/217 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +++FG ++V K++ +F+T + P + ++S GI+
Sbjct: 17 DLETTGTDPTSDR--IIQFGCVLVQDGKIIA--NFATDVNPNQVVPKQIQS--LTGISNT 70
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP FE+VA I+ L ++ HN+ FD + G P P+ + ID++
Sbjct: 71 QVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-PLTIPAIDTVE- 127
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVLFLESSLPNTFN 197
L + F + +++ L+ GL + H++ D ++ E+L + SLP
Sbjct: 128 LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKM---KSLPLVTM 184
Query: 198 SNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQ 234
+ T R S E+ ++ P++ YQ
Sbjct: 185 EKIAELSQQTARETSAFIQQTYEQMKKQVTPLNPAYQ 221
>gi|381182226|ref|ZP_09891043.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Listeriaceae bacterium TTU M1-001]
gi|380317871|gb|EIA21173.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Listeriaceae bacterium TTU M1-001]
Length = 932
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 9/172 (5%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V DLETT +A + +++F A IV +++VE +FST I P L V I
Sbjct: 9 VVVDLETT-GNQASRDDRIIQFAATIVEGKQIVE--TFSTFINP--LKPVPPFIQELTSI 63
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
T + ++ AP FE+VA+ I ++L+ ++ HN+ FD +++ +G P + +ID+
Sbjct: 64 TPDDLKDAPLFEDVAETILALLDNTIFVAHNV-HFDWTFLQKEMRRVGLSIP-KMKLIDT 121
Query: 136 LGVLTEKFGRRAGNMKMATLASYFG-LGQQKHRSLDDVRMNLEVLKHCATVL 186
+ L + K+ LA FG + + H++ D + E+ C L
Sbjct: 122 VE-LARILYPSVDSYKLQDLADEFGFIHENPHQADSDALVTAELFIKCVEKL 172
>gi|312899802|ref|ZP_07759121.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0470]
gi|422736936|ref|ZP_16793193.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX2141]
gi|428767587|ref|YP_007153698.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
[Enterococcus faecalis str. Symbioflor 1]
gi|311293052|gb|EFQ71608.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0470]
gi|315146017|gb|EFT90033.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX2141]
gi|427185760|emb|CCO72984.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
[Enterococcus faecalis str. Symbioflor 1]
Length = 929
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 13/217 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +++FG ++V K++ +F+T + P + ++S GI+
Sbjct: 17 DLETTGTDPTSDR--IIQFGCVLVQDGKIIA--NFATDVNPNQVVPKQIQS--LTGISNT 70
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP FE+VA I+ L ++ HN+ FD + G P P+ + ID++
Sbjct: 71 QVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-PLTIPAIDTVE- 127
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVLFLESSLPNTFN 197
L + F + +++ L+ GL + H++ D ++ E+L + SLP
Sbjct: 128 LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKM---KSLPLVTM 184
Query: 198 SNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQ 234
+ T R S E+ ++ P++ YQ
Sbjct: 185 EKIAELSQQTARETSAFIQQTYEQMKKQVTPLNPAYQ 221
>gi|255975219|ref|ZP_05425805.1| DNA polymerase III [Enterococcus faecalis T2]
gi|307285838|ref|ZP_07565972.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0860]
gi|255968091|gb|EET98713.1| DNA polymerase III [Enterococcus faecalis T2]
gi|306502599|gb|EFM71866.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0860]
Length = 929
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 13/217 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +++FG ++V K++ +F+T + P + ++S GI+
Sbjct: 17 DLETTGTDPTSDR--IIQFGCVLVQDGKIIA--NFATDVNPNQVVPKQIQS--LTGISNT 70
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP FE+VA I+ L ++ HN+ FD + G P P+ + ID++
Sbjct: 71 QVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-PLTIPAIDTVE- 127
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVLFLESSLPNTFN 197
L + F + +++ L+ GL + H++ D ++ E+L + SLP
Sbjct: 128 LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKM---KSLPLVTM 184
Query: 198 SNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQ 234
+ T R S E+ ++ P++ YQ
Sbjct: 185 EKIAELSQQTARETSAFIQQTYEQMKKQVTPLNPAYQ 221
>gi|256961321|ref|ZP_05565492.1| DNA polymerase III [Enterococcus faecalis Merz96]
gi|293383606|ref|ZP_06629516.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
R712]
gi|293387281|ref|ZP_06631838.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
S613]
gi|312906156|ref|ZP_07765168.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
DAPTO 512]
gi|312909501|ref|ZP_07768356.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
faecalis DAPTO 516]
gi|256951817|gb|EEU68449.1| DNA polymerase III [Enterococcus faecalis Merz96]
gi|291079118|gb|EFE16482.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
R712]
gi|291083318|gb|EFE20281.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
S613]
gi|310627802|gb|EFQ11085.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
DAPTO 512]
gi|311290174|gb|EFQ68730.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
faecalis DAPTO 516]
Length = 929
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 13/217 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +++FG ++V K++ +F+T + P + ++S GI+
Sbjct: 17 DLETTGTDPTSDR--IIQFGCVLVQEGKIIA--NFATDVNPNQVVPKQIQS--LTGISNT 70
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP FE+VA I+ L ++ HN+ FD + G P P+ + ID++
Sbjct: 71 QVQKAPYFEDVAHTIYHYLEDTIFVAHNV-HFDYNFLARELVRCGTP-PLTIPAIDTVE- 127
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVLFLESSLPNTFN 197
L + F + +++ L+ GL + H++ D ++ E+L + SLP
Sbjct: 128 LAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKM---KSLPLVTM 184
Query: 198 SNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQ 234
+ T R S E+ ++ P++ YQ
Sbjct: 185 EKIAELSQQTARETSAFIQQTYEQMKKQVTPLNPAYQ 221
>gi|167750041|ref|ZP_02422168.1| hypothetical protein EUBSIR_01009 [Eubacterium siraeum DSM 15702]
gi|167657062|gb|EDS01192.1| DNA polymerase III, alpha subunit, Gram-positive type [Eubacterium
siraeum DSM 15702]
Length = 1605
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 11/169 (6%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+I+ FD+ETT A +R + E GA+ + R + +E FST + P + + +
Sbjct: 590 DIIVFDIETTGLHPANER--ITEIGAVKL--RNMEIVERFSTFVNP--MMPIPSNITELT 643
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT + V AP E+VA F G + +FD + I+ A A + K PV +
Sbjct: 644 GITDDMVADAPT-EDVAVSDFMAFCGNSPVCAHNAKFDVSFIRSAAARMEKSFDNPV--V 700
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDDVRMNLEVLKH 181
D+L + + N K+ T+A YF LG HR++ D M + H
Sbjct: 701 DTLSIAKAAL-KGIKNYKLDTIAKYFKLGDFDHHRAVADAEMLCMIYMH 748
>gi|110801936|ref|YP_698978.1| DNA polymerase III PolC [Clostridium perfringens SM101]
gi|110682437|gb|ABG85807.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens SM101]
Length = 1449
Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 11/168 (6%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
E V FD+ETT + ++E GA+ + ++V+ SFST + PK + K +
Sbjct: 434 EYVVFDIETTGFSSKNDK--IIEIGAVKLKDGEIVD--SFSTFVDPK--VNIPYKITELT 487
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
IT+ V P +EV K + V HN FD IK+ ++GK PV +
Sbjct: 488 SITQNMVNGQPTIDEVLPKFMEFVGNSVLVAHNA-AFDVGFIKKNLMDMGKTLKNPV--M 544
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLK 180
D++ L +K+ +A + G+ + HR++DD + E+LK
Sbjct: 545 DTVP-LARYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILK 591
>gi|18310673|ref|NP_562607.1| DNA polymerase III PolC [Clostridium perfringens str. 13]
gi|168214476|ref|ZP_02640101.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens CPE str. F4969]
gi|24418366|sp|Q8XJR3.1|DPO3_CLOPE RecName: Full=DNA polymerase III PolC-type; Short=PolIII
gi|18145354|dbj|BAB81397.1| DNA polymerase III alpha subunit [Clostridium perfringens str. 13]
gi|170714031|gb|EDT26213.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens CPE str. F4969]
Length = 1449
Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 11/168 (6%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
E V FD+ETT + ++E GA+ + ++V+ SFST + PK + K +
Sbjct: 434 EYVVFDIETTGFSSKNDK--IIEIGAVKLKDGEIVD--SFSTFVDPK--VNIPYKITELT 487
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
IT+ V P +EV K + V HN FD IK+ ++GK PV +
Sbjct: 488 SITQNMVNGQPTIDEVLPKFMEFVGNSVLVAHNA-AFDVGFIKKNLMDMGKTLKNPV--M 544
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLK 180
D++ L +K+ +A + G+ + HR++DD + E+LK
Sbjct: 545 DTVP-LARYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILK 591
>gi|241896118|ref|ZP_04783414.1| DNA-directed DNA polymerase III epsilon subunit [Weissella
paramesenteroides ATCC 33313]
gi|241870632|gb|EER74383.1| DNA-directed DNA polymerase III epsilon subunit [Weissella
paramesenteroides ATCC 33313]
Length = 970
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 10/162 (6%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R + +++ V +K++ FSTLI P + ++ + GI E
Sbjct: 38 DLETT--RTTSESGRIIQIAIAFVQNKKIIN--QFSTLINPHE--SIPRNVVQLTGINAE 91
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V AP FEEVA+ I ++L G ++ HN+ FD + F IG + + ID++
Sbjct: 92 MVAGAPSFEEVAESIHTMLTGTIFVAHNV-NFDLPFLNAEFQRIGMNT-LNLVAIDTV-T 148
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVL 179
L++ A ++ L SY L + H++ D E+L
Sbjct: 149 LSQIVWPTAPGFRLVDLTSYLALVHGRPHQADSDALATAELL 190
>gi|385815809|ref|YP_005852200.1| DNA polymerase III subunit epsilon [Lactobacillus delbrueckii
subsp. bulgaricus 2038]
gi|325125846|gb|ADY85176.1| DNA polymerase III, epsilon subunit [Lactobacillus delbrueckii
subsp. bulgaricus 2038]
Length = 286
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 24/168 (14%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ FDLETT G++ +++ GA+ V R + FST + P L + S
Sbjct: 32 DYTVFDLETT-----GKK--IIQIGALKV--RDDQTVAKFSTYVNP--LEKINDYVSHLT 80
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GI+ ++AP +EV + GHNI FDC A+ G P P +
Sbjct: 81 GISNYQTDAAPLIDEVMPDFLDFVGDDTLVGHNILSFDC----NVLADNGYPVANP--KL 134
Query: 134 DSLGVLTEKFGRRA------GNMKMATLASYFGLGQQKHRSLDDVRMN 175
D+L +L + +R N++++TL Y+G+ H ++ D N
Sbjct: 135 DTL-LLANSYKKRGLFADPISNVRLSTLKEYYGININSHIAISDCITN 181
>gi|154487175|ref|ZP_02028582.1| hypothetical protein BIFADO_01016 [Bifidobacterium adolescentis
L2-32]
gi|154085038|gb|EDN84083.1| exonuclease [Bifidobacterium adolescentis L2-32]
Length = 261
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 10/173 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D+ETT G+ ++E GA+ + R ++ S+S L+ P+ + K ++
Sbjct: 98 DYVAVDIETT---GLGRDARIIELGAVRI--RHGRKVASYSQLVNPQ--IPIPAKVTQIT 150
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V+ P ++ K ++ W GHNIRRFD I +G P V
Sbjct: 151 GITDRNVKGKPTIDKALPKFYAFCGRDTWIGHNIRRFDIPVIAREAQRVGAGMP-DVSFY 209
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDDVRMNLEVLKHCATV 185
D++ L++ + + ++ L YFG+ + ++HR+ DD ++ +H +
Sbjct: 210 DTME-LSQALLPQLDHHRVVDLIRYFGIAKTERHRAADDAAQTAQIFEHLKQI 261
>gi|410863476|ref|YP_006978710.1| DNA polymerase III subunit epsilon [Alteromonas macleodii AltDE1]
gi|410820738|gb|AFV87355.1| DNA polymerase III subunit epsilon [Alteromonas macleodii AltDE1]
Length = 715
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 19/170 (11%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V D+ETT + R + E G + + K E++ F TL+ P+ + +R I
Sbjct: 544 VVVDIETTGGNNSYNR--ITEIGMVKLVGGK--EVDRFQTLLNPQ--RRIPSSITRLTDI 597
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
+ + V AP F EVAD I S V+ HN+ FD IK+ FA + +P P
Sbjct: 598 SDDMVADAPLFAEVADHIASFTEDAVFVAHNV-NFDYGFIKQEFARLEQPFRRP------ 650
Query: 136 LGVLTEKFGRRA----GNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLK 180
+ T + RR + +A L +F + +Q HR+L D + E+LK
Sbjct: 651 -KMCTVREMRRTHPGLSSYSLANLTKHFHIDMEQHHRALSDAKAAAELLK 699
>gi|440697287|ref|ZP_20879715.1| BRCA1 C-terminal domain protein [Streptomyces turgidiscabies Car8]
gi|440280424|gb|ELP68161.1| BRCA1 C-terminal domain protein [Streptomyces turgidiscabies Car8]
Length = 335
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 9/137 (6%)
Query: 45 RKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAG 104
R VE ++T+ +D V + G+T +A+E AP F ++A++ S L RV
Sbjct: 49 RGEVEDHWYTTVNPERDPGPVWIH-----GLTSDALEGAPLFVDIAEEFASRLADRVLVA 103
Query: 105 HNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQ 164
HN FD + I +A + APV + L+++ G N K+ TLA+++G+ QQ
Sbjct: 104 HNA-VFDWSMIAREYARAEREAPVRQRLCTI--ALSKELGLPLPNHKLETLAAHYGVVQQ 160
Query: 165 K-HRSLDDVRMNLEVLK 180
+ H +LDD R+ E +
Sbjct: 161 RAHHALDDARVLAEAFR 177
>gi|410453939|ref|ZP_11307882.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus bataviensis LMG 21833]
gi|409932619|gb|EKN69577.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus bataviensis LMG 21833]
Length = 933
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 64/112 (57%), Gaps = 10/112 (8%)
Query: 14 EIVFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
+ V DLETT +P++ G R +++F A+++ K+ E FS+L+ PK A+
Sbjct: 4 KFVVIDLETTGNLPKK-GDR--IIQFAAVVIENGKITE--KFSSLLNPK--KAIPPFIEE 56
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
GI + V+ AP F E+A+K+ S+L+G + HN+ FD + ++E E G
Sbjct: 57 LTGINDDMVKGAPLFSEIAEKVTSLLDGAYFVAHNV-LFDLSFLQEELIEAG 107
>gi|379056933|ref|ZP_09847459.1| hypothetical protein SproM1_02552 [Serinicoccus profundi MCCC
1A05965]
Length = 595
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 79/168 (47%), Gaps = 14/168 (8%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V DLETT AG + + EFGA+ V R L F TL++P + + + GI
Sbjct: 29 VVVDLETTGGSPAGSQ--ITEFGAVKV--RGGQVLGEFQTLVRPA--TPIPAFITVLTGI 82
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAP-VPVGMID 134
T V AP V + G V HN FD + +K A E G P P PV +D
Sbjct: 83 TNAMVVQAPAISTVLPQFLEFARGSVLVAHNA-GFDVSFLKAAARETGHPWPGFPV--LD 139
Query: 135 SLGVLTEKFGRR--AGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVL 179
++ L + R+ A N K+A+LA FG HR+L D R ++VL
Sbjct: 140 TV-RLARQLVRKDEAPNHKLASLARLFGATTTPDHRALHDARATVDVL 186
>gi|383776599|ref|YP_005461165.1| putative DNA polymerase III subunit epsilon [Actinoplanes
missouriensis 431]
gi|381369831|dbj|BAL86649.1| putative DNA polymerase III epsilon subunit [Actinoplanes
missouriensis 431]
Length = 578
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 82/190 (43%), Gaps = 28/190 (14%)
Query: 2 DGFIPSQAAGTAEIVF--FDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKP 59
DG + A A+ F DLETT A + E GA+ V R V+L F+TL+ P
Sbjct: 18 DGSVDPAALSLADTTFVVLDLETT--GGAADGAGITEIGAVKV--RAGVQLGEFATLVNP 73
Query: 60 KDLSAVALKS--SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKE 117
V L + GIT + AP E V + L G V HN +D +K
Sbjct: 74 ----GVPLPPFITVLTGITEAMLRPAPPIETVLPALLEFLRGAVLVAHNA-PYDVGFLKA 128
Query: 118 AFAEIGKPAPVPVGMIDSLGVL-TEKFGRRA------GNMKMATLASYF-GLGQQKHRSL 169
A A G P P + VL T RRA N K+ TLA +F + HR+L
Sbjct: 129 ACARHGYPWP-------QMRVLDTAALARRALTKDEVPNRKLGTLARFFRSAVEPNHRAL 181
Query: 170 DDVRMNLEVL 179
DD + ++VL
Sbjct: 182 DDAKATVDVL 191
>gi|422346361|ref|ZP_16427275.1| DNA polymerase III polC-type [Clostridium perfringens WAL-14572]
gi|373225906|gb|EHP48233.1| DNA polymerase III polC-type [Clostridium perfringens WAL-14572]
Length = 1449
Score = 58.5 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 11/168 (6%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
E V FD+ETT + ++E GA+ + ++V+ SFST + PK + K +
Sbjct: 434 EYVVFDIETTGFSSKNDK--IIEIGAVKLKDGEIVD--SFSTFVDPK--VNIPYKITELT 487
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
IT+ V P +EV K + V HN FD IK+ ++GK PV +
Sbjct: 488 SITQNMVNGQPTIDEVLPKFMEFVGDSVLVAHNA-AFDVGFIKKNLMDMGKTLKNPV--M 544
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLK 180
D++ L +K+ +A + G+ + HR++DD + E+LK
Sbjct: 545 DTVP-LARYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILK 591
>gi|168216978|ref|ZP_02642603.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens NCTC 8239]
gi|182380934|gb|EDT78413.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens NCTC 8239]
Length = 1449
Score = 58.5 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 11/168 (6%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
E V FD+ETT + ++E GA+ + ++V+ SFST + PK + K +
Sbjct: 434 EYVVFDIETTGFSSKNDK--IIEIGAVKLKDGEIVD--SFSTFVDPK--VNIPYKITELT 487
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
IT+ V P +EV K + V HN FD IK+ ++GK PV +
Sbjct: 488 SITQNMVNGQPTIDEVLPKFMEFVGDSVLVAHNA-AFDVGFIKKNLMDMGKTLKNPV--M 544
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLK 180
D++ L +K+ +A + G+ + HR++DD + E+LK
Sbjct: 545 DTVP-LARYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILK 591
>gi|168208108|ref|ZP_02634113.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens E str. JGS1987]
gi|170660599|gb|EDT13282.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens E str. JGS1987]
Length = 1449
Score = 58.5 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 11/168 (6%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
E V FD+ETT + ++E GA+ + ++V+ SFST + PK + K +
Sbjct: 434 EYVVFDIETTGFSSKNDK--IIEIGAVKLKDGEIVD--SFSTFVDPK--VNIPYKITELT 487
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
IT+ V P +EV K + V HN FD IK+ ++GK PV +
Sbjct: 488 SITQNMVNGQPTIDEVLPKFMEFVGDSVLVAHNA-AFDVGFIKKNLMDMGKTLKNPV--M 544
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLK 180
D++ L +K+ +A + G+ + HR++DD + E+LK
Sbjct: 545 DTVP-LARYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILK 591
>gi|169342745|ref|ZP_02863785.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens C str. JGS1495]
gi|169299251|gb|EDS81321.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens C str. JGS1495]
Length = 1449
Score = 58.5 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 11/168 (6%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
E V FD+ETT + ++E GA+ + ++V+ SFST + PK + K +
Sbjct: 434 EYVVFDIETTGFSSKNDK--IIEIGAVKLKDGEIVD--SFSTFVDPK--VNIPYKITELT 487
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
IT+ V P +EV K + V HN FD IK+ ++GK PV +
Sbjct: 488 SITQNMVNGQPTIDEVLPKFMEFVGDSVLVAHNA-AFDVGFIKKNLMDMGKTLKNPV--M 544
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLK 180
D++ L +K+ +A + G+ + HR++DD + E+LK
Sbjct: 545 DTVP-LARYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILK 591
>gi|110799061|ref|YP_696378.1| DNA polymerase III PolC [Clostridium perfringens ATCC 13124]
gi|168211421|ref|ZP_02637046.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens B str. ATCC 3626]
gi|110673708|gb|ABG82695.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens ATCC 13124]
gi|170710571|gb|EDT22753.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
perfringens B str. ATCC 3626]
Length = 1449
Score = 58.5 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 11/168 (6%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
E V FD+ETT + ++E GA+ + ++V+ SFST + PK + K +
Sbjct: 434 EYVVFDIETTGFSSKNDK--IIEIGAVKLKDGEIVD--SFSTFVDPK--VNIPYKITELT 487
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
IT+ V P +EV K + V HN FD IK+ ++GK PV +
Sbjct: 488 SITQNMVNGQPTIDEVLPKFMEFVGDSVLVAHNA-AFDVGFIKKNLMDMGKTLKNPV--M 544
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLK 180
D++ L +K+ +A + G+ + HR++DD + E+LK
Sbjct: 545 DTVP-LARYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILK 591
>gi|290962326|ref|YP_003493508.1| DNA polymerase III subunit epsilon [Streptomyces scabiei 87.22]
gi|260651852|emb|CBG74981.1| putative DNA polymerase III, epsilon chain (EC 2.7.7.7)
[Streptomyces scabiei 87.22]
Length = 613
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 71/140 (50%), Gaps = 30/140 (21%)
Query: 53 FSTLIKPKDLSAVALKSSRCD-------GITREAVESAPEFEEVADKIFSILNGRVWAGH 105
FSTL+ P CD G+T + + AP FEE+A ++ ++L+ RV H
Sbjct: 54 FSTLLNPD-----------CDPGPVHVHGLTADRLAGAPAFEEIAPQVGALLSSRVLVAH 102
Query: 106 NIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAG----NMKMATLASYFGL 161
N +FD + FA++ APV S + T R G ++K+ TLA+++G+
Sbjct: 103 NA-QFDYDFLAHEFAQVRSWAPV------SRRLCTLALNRLVGPATPDLKLGTLAAHYGV 155
Query: 162 GQQK-HRSLDDVRMNLEVLK 180
Q+K H + DDVR+ +L+
Sbjct: 156 RQEKAHDAQDDVRVLSGILR 175
>gi|399528694|ref|YP_006560681.1| DNA polymerase III epsilon subunit [Croceibacter phage P2559S]
gi|392284409|gb|AFM54839.1| DNA polymerase III epsilon subunit [Croceibacter phage P2559S]
Length = 246
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 81/169 (47%), Gaps = 14/169 (8%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
IVFFDLETT + R +++ + + E E+ + LI P + ++ G
Sbjct: 7 IVFFDLETTGVNTSTDR--IVQIAILKINTEG--EQETANRLINPG--RPIPKAATDVHG 60
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAF--AEIGKPAPVPVGM 132
IT E V+ AP F+++A +F I +G G+N FD + E F AEI PA
Sbjct: 61 ITDEMVKDAPTFKQIAKSLFDIFDGCDVGGYNSDNFDVPLLIEEFNRAEIEYPA--AGAA 118
Query: 133 IDSLGVLTEKFGRRAGNMKMA-TLASYFGLG-QQKHRSLDDVRMNLEVL 179
I+ + VL K R+ + K+ T Y G H +L+DVR EVL
Sbjct: 119 INFVAVL--KLERKVNSHKLTDTYKRYTGKELDGAHDALNDVRATAEVL 165
>gi|427392683|ref|ZP_18886688.1| exonuclease, DNA polymerase III, epsilon subunit [Alloiococcus
otitis ATCC 51267]
gi|425731193|gb|EKU94014.1| exonuclease, DNA polymerase III, epsilon subunit [Alloiococcus
otitis ATCC 51267]
Length = 925
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 8/141 (5%)
Query: 34 VLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKI 93
+++F I++ ++VE F TL+ P L V ++ + GI+++ V AP F+E+A I
Sbjct: 25 MIQFACILLEDGQVVE--EFDTLVNP--LRPVPIRIQKLTGISQKEVNQAPHFDEIAHII 80
Query: 94 FSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMA 153
+L V+ HN+ FD + E F +G P+ ID++ L+ +A + +
Sbjct: 81 HDLLEDAVFVAHNV-NFDYRFLNERFEAVGL-EPLQTKAIDTVA-LSRICFPQADHYNLT 137
Query: 154 TLASYFGLG-QQKHRSLDDVR 173
L ++ G +Q H +L D R
Sbjct: 138 DLTTWLGYDIEQAHDALYDAR 158
>gi|291440458|ref|ZP_06579848.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
14672]
gi|291343353|gb|EFE70309.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
14672]
Length = 327
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
G+T EA+E AP F +VA++ + L GRV HN FD I +A APV +
Sbjct: 74 GLTSEALEGAPLFRDVAEEFATRLEGRVLVAHNA-VFDWQMIAREYARARSEAPVKQRLC 132
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLK 180
L+++ G N K+ +LA++FG+ Q++ H +LDD R+ E +
Sbjct: 133 TI--ALSKELGLPLPNHKLESLAAHFGVVQRRAHHALDDARVLAEAFR 178
>gi|385332784|ref|YP_005886735.1| DNA polymerase III subunit epsilon [Marinobacter adhaerens HP15]
gi|311695934|gb|ADP98807.1| DNA polymerase III, epsilon subunit [Marinobacter adhaerens HP15]
Length = 486
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 80/183 (43%), Gaps = 33/183 (18%)
Query: 12 TAEIVFFDLETTVPRRA-------GQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSA 64
+A F D+ETT A G RFW G ++ + TL+ P+ +
Sbjct: 10 SATFAFLDIETTGGNSARDRITEIGIRFW--RAGEVV---------GEWQTLLNPE--TR 56
Query: 65 VALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGK 124
++ GI+ E V AP FEEVAD++ + L G+V+ HN RFD IK F +G+
Sbjct: 57 ISPFIENFTGISNEMVADAPLFEEVADELEAQLKGKVFVAHNA-RFDYGFIKSEFRRLGR 115
Query: 125 PAPVPVGMIDSLGVLTEKFGRRAG----NMKMATLASYFGLGQ-QKHRSLDDVRMNLEVL 179
V + T K RR M L + GL + Q+HR++ DV L
Sbjct: 116 LFSAKV-------LCTVKLSRRLYPEFRRHNMDALIARHGLARVQRHRAMGDVSAMLAFF 168
Query: 180 KHC 182
+H
Sbjct: 169 EHA 171
>gi|419704362|ref|ZP_14231910.1| DNA polymerase III PolC [Mycoplasma canis UF33]
gi|384394723|gb|EIE41161.1| DNA polymerase III PolC [Mycoplasma canis UF33]
Length = 1441
Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats.
Identities = 47/132 (35%), Positives = 69/132 (52%), Gaps = 12/132 (9%)
Query: 7 SQAAGTAEIVFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKD-LSA 64
+Q A V FDLETT + + G ++EFGA I+ ++V+ F IKP++ LS
Sbjct: 402 NQKISEASYVVFDLETTSISPKVGD---IIEFGASIIENGQIVDNVQF--FIKPREKLSD 456
Query: 65 VALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGK 124
+ ++ IT E VE+ E EE D+IF IL+ +V HN +FD + + F + K
Sbjct: 457 FTINLTK---ITNEMVENGIEIEEALDRIFKILDNKVAVAHNA-KFDMHFLLQKFKDHNK 512
Query: 125 PAPVPVGMIDSL 136
P IDSL
Sbjct: 513 KIP-NTTFIDSL 523
>gi|419703702|ref|ZP_14231257.1| DNA polymerase III PolC [Mycoplasma canis PG 14]
gi|384394670|gb|EIE41109.1| DNA polymerase III PolC [Mycoplasma canis PG 14]
Length = 1441
Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats.
Identities = 47/132 (35%), Positives = 69/132 (52%), Gaps = 12/132 (9%)
Query: 7 SQAAGTAEIVFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKD-LSA 64
+Q A V FDLETT + + G ++EFGA I+ ++V+ F IKP++ LS
Sbjct: 402 NQKISEASYVVFDLETTSISPKVGD---IIEFGASIIENGQIVDNVQF--FIKPREKLSD 456
Query: 65 VALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGK 124
+ ++ IT E VE+ E EE D+IF IL+ +V HN +FD + + F + K
Sbjct: 457 FTINLTK---ITNEMVENGIEIEEALDRIFKILDNKVAVAHNA-KFDMHFLLQKFKDHNK 512
Query: 125 PAPVPVGMIDSL 136
P IDSL
Sbjct: 513 KIP-NTTFIDSL 523
>gi|339624795|ref|ZP_08660584.1| Rad3-related DNA helicase [Fructobacillus fructosus KCTC 3544]
Length = 805
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 79/162 (48%), Gaps = 11/162 (6%)
Query: 12 TAEIVFFDLETTVPR-RAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
+A V DLETT P G R +++ G V +K+VE F + + P + K
Sbjct: 4 SAAFVIVDLETTSPSVENGGR--IIQIGMTFVKNKKIVE--HFDSFVNPA--QPIDRKIQ 57
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
+ I+ V+ AP FEE+A + ++L G+V+ HN+ FD + FA +G P + +
Sbjct: 58 QLTHISPSDVQDAPFFEELAPSLQALLQGQVFVAHNV-NFDLPYLNAEFARVGLPE-LDL 115
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDD 171
ID++ + F G +++ L +Y L Q HR+ D
Sbjct: 116 QAIDTVQLAQILFPTAPG-YRLSDLTTYLDLPLTQAHRANAD 156
>gi|262202943|ref|YP_003274151.1| DNA polymerase III subunit epsilon [Gordonia bronchialis DSM 43247]
gi|262086290|gb|ACY22258.1| DNA polymerase III, epsilon subunit [Gordonia bronchialis DSM
43247]
Length = 595
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 76/174 (43%), Gaps = 20/174 (11%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+V DLETT AG R + E GA+ + R L F+TL+ P+ ++ + G
Sbjct: 38 LVVVDLETTGSDPAGDR--ITEIGAVKI--RGGEVLGEFATLVDPE--RSIPPQIVTLTG 91
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
IT V +AP EEV G + HN RFD ++ + P P
Sbjct: 92 ITHAMVSAAPRIEEVLPAFIEFARGSILVAHNA-RFDMGFLRRNAQRLHLDFPFP----- 145
Query: 135 SLGVLTEKFGRR------AGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKH 181
L + T RR A ++++ LA F + + HR+LDD R +EV H
Sbjct: 146 -LSLCTVTMARRILHREEAPTVRLSALADLFDVSVRPTHRALDDARATVEVFHH 198
>gi|332143320|ref|YP_004429058.1| DNA polymerase III subunit epsilon [Alteromonas macleodii str.
'Deep ecotype']
gi|327553342|gb|AEB00061.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str.
'Deep ecotype']
Length = 715
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 19/170 (11%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V D+ETT + R + E G + + K E++ F TL+ P+ + +R GI
Sbjct: 544 VVVDIETTGGNNSYNR--ITEIGMVKLVGGK--EVDRFQTLLNPQ--RRIPSSITRLTGI 597
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
+ + V AP F EVAD I S V+ HN+ FD IK+ FA + + P
Sbjct: 598 SDDMVADAPLFAEVADHIASFTEDAVFVAHNV-NFDYGFIKQEFARLEQSFRRP------ 650
Query: 136 LGVLTEKFGRRA----GNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLK 180
+ T + RR + +A L +F + +Q HR+L D + E+LK
Sbjct: 651 -KMCTVREMRRTHPGLSSYSLANLTKHFHIDMEQHHRALSDAKAAAELLK 699
>gi|291436367|ref|ZP_06575757.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291339262|gb|EFE66218.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 631
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 11/153 (7%)
Query: 30 QRFWVLEFGAIIVCPRKLVELESFSTLIKPK-DLSAVALKSSRCDGITREAVESAPEFEE 88
+R VL I + P + FSTL+ P D V + G+T E ++ AP F++
Sbjct: 33 RRDRVLSVAVITIGPDG-EQTGEFSTLLNPGCDPGPVEVH-----GLTVERLQGAPTFDQ 86
Query: 89 VADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAG 148
VA +I ++L GRV HN +FD + FA PV + L +
Sbjct: 87 VAGRIGAMLQGRVLVAHNA-QFDYDFLAHEFARARMWLPVSQRLCTL--ALNRQVDPPTD 143
Query: 149 NMKMATLASYFGLGQQK-HRSLDDVRMNLEVLK 180
+MK+ TLA+++G+ +Q+ H +LDD R+ +L+
Sbjct: 144 DMKLGTLAAHYGVSRQRAHDALDDTRVLAGILR 176
>gi|431747485|ref|ZP_19536276.1| exonuclease, DNA polymerase III, epsilon subunit [Enterococcus
faecium E2134]
gi|430606113|gb|ELB43479.1| exonuclease, DNA polymerase III, epsilon subunit [Enterococcus
faecium E2134]
Length = 600
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 16/165 (9%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
+ FD+ETT + R ++E GA++ ++ V ++SF TL+ PK +A +S + I
Sbjct: 52 IAFDVETTGLNSSSDR--IVEIGAVLF--KEGVPIQSFGTLVNPK--VRIAASASAINNI 105
Query: 76 TREAVESAPEFEEVADKIFSI----LNGRV-WAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
T E + SAP +EV ++ L+G++ HN FD + F+ +G A +
Sbjct: 106 TNEMLNSAPNEQEVYPQLVEFLGDALDGKITMCAHNA-SFDFGFLSNTFSRLGYDAKIK- 163
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGL-GQQKHRSLDDVRM 174
+D+L L+ K + N K T+A YFGL HR+ D +
Sbjct: 164 -YVDTLS-LSRKHIKGIVNHKQETVAEYFGLINDTAHRAESDADI 206
>gi|430851478|ref|ZP_19469226.1| exonuclease, DNA polymerase III, epsilon subunit [Enterococcus
faecium E1185]
gi|431268072|ref|ZP_19506198.1| exonuclease, DNA polymerase III, epsilon subunit [Enterococcus
faecium E1623]
gi|430534002|gb|ELA74477.1| exonuclease, DNA polymerase III, epsilon subunit [Enterococcus
faecium E1185]
gi|430576115|gb|ELB14798.1| exonuclease, DNA polymerase III, epsilon subunit [Enterococcus
faecium E1623]
Length = 600
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 16/165 (9%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
+ FD+ETT + R ++E GA++ ++ V ++SF TL+ PK +A +S + I
Sbjct: 52 IAFDVETTGLNSSSDR--IVEIGAVLF--KEGVPIQSFGTLVNPK--VRIAASASAINNI 105
Query: 76 TREAVESAPEFEEVADKIFSI----LNGRV-WAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
T E + SAP +EV ++ L+G++ HN FD + F+ +G A +
Sbjct: 106 TNEMLNSAPNEQEVYPQLVEFLGDALDGKITMCAHNA-SFDFGFLSNTFSRLGYDAKIK- 163
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGL-GQQKHRSLDDVRM 174
+D+L L+ K + N K T+A YFGL HR+ D +
Sbjct: 164 -YVDTLS-LSRKHIKGIVNHKQETVAEYFGLINDTAHRAESDADI 206
>gi|431739430|ref|ZP_19528360.1| exonuclease, DNA polymerase III, epsilon subunit [Enterococcus
faecium E1972]
gi|430595895|gb|ELB33772.1| exonuclease, DNA polymerase III, epsilon subunit [Enterococcus
faecium E1972]
Length = 600
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 16/165 (9%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
+ FD+ETT + R ++E GA++ ++ V ++SF TL+ PK +A +S + I
Sbjct: 52 IAFDVETTGLNSSSDR--IVEIGAVLF--KEGVPIQSFGTLVNPK--VRIAASASAINNI 105
Query: 76 TREAVESAPEFEEVADKIFSI----LNGRV-WAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
T E + SAP +EV ++ L+G++ HN FD + F+ +G A +
Sbjct: 106 TNEMLNSAPNEQEVYPQLVEFLGDALDGKITMCAHNA-SFDFGFLSNTFSRLGYDAKIK- 163
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGL-GQQKHRSLDDVRM 174
+D+L L+ K + N K T+A YFGL HR+ D +
Sbjct: 164 -YVDTLS-LSRKHIKGIVNHKQETVAEYFGLINDTAHRAESDADI 206
>gi|418050452|ref|ZP_12688538.1| DNA polymerase III, epsilon subunit [Mycobacterium rhodesiae JS60]
gi|353188076|gb|EHB53597.1| DNA polymerase III, epsilon subunit [Mycobacterium rhodesiae JS60]
Length = 614
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 84/204 (41%), Gaps = 31/204 (15%)
Query: 16 VFFDLETTVPRRA----GQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
V DLETT R G R + E GA+ V R L F+TL+ P+ ++ + R
Sbjct: 22 VVVDLETTGGRATASADGSRDAITEIGAVKV--RGGEVLGEFATLVDPQ--RSIPPQIVR 77
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GIT V AP V G V HN FD ++ A + G P P
Sbjct: 78 LTGITTAMVHDAPTIAAVLPMFLEFARGAVLVAHNA-GFDIGFLRSAAEQCGISWPRPPV 136
Query: 132 MIDSLGVLTEKFGRR------AGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVL----- 179
+ T K RR A ++++ATLA+ G Q HR+LDD R ++VL
Sbjct: 137 LC------TVKLARRVLTREEAPSVRLATLAALVGSATQPTHRALDDARATVDVLHALIE 190
Query: 180 ----KHCATVLFLESSLPNTFNSN 199
+ T L LPN N+
Sbjct: 191 RVGNQGVHTYTDLRGYLPNISNAQ 214
>gi|424790990|ref|ZP_18217482.1| NUMOD1 domain protein [Enterococcus faecium V689]
gi|424954709|ref|ZP_18369595.1| NUMOD1 domain protein [Enterococcus faecium R494]
gi|425039612|ref|ZP_18444135.1| NUMOD1 domain protein [Enterococcus faecium 513]
gi|402920162|gb|EJX40698.1| NUMOD1 domain protein [Enterococcus faecium V689]
gi|402935858|gb|EJX55068.1| NUMOD1 domain protein [Enterococcus faecium R494]
gi|403015338|gb|EJY28248.1| NUMOD1 domain protein [Enterococcus faecium 513]
Length = 606
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 16/165 (9%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
+ FD+ETT + R ++E GA++ ++ V ++SF TL+ PK +A +S + I
Sbjct: 58 IAFDVETTGLNSSSDR--IVEIGAVLF--KEGVPIQSFGTLVNPK--VRIAASASAINNI 111
Query: 76 TREAVESAPEFEEVADKIFSI----LNGRV-WAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
T E + SAP +EV ++ L+G++ HN FD + F+ +G A +
Sbjct: 112 TNEMLNSAPNEQEVYPQLVEFLGDALDGKITMCAHNA-SFDFGFLSNTFSRLGYDAKIK- 169
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGL-GQQKHRSLDDVRM 174
+D+L L+ K + N K T+A YFGL HR+ D +
Sbjct: 170 -YVDTLS-LSRKHIKGIVNHKQETVAEYFGLINDTAHRAESDADI 212
>gi|419622450|ref|ZP_14155681.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 23216]
gi|380599384|gb|EIB19754.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 23216]
Length = 253
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+E+T G+ +LE GA+ + K E+ F + IK K++ + GI E
Sbjct: 76 DIESTGGVSKGE---ILEIGAVKIQNSK--EIGRFQSFIKVKEIPE---NITELTGIIYE 127
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
VE+AP +V L ++ HN+R FD + I +A E G G++ + +
Sbjct: 128 MVENAPSLAKVLSDFRFFLKDSIFVAHNVR-FDYSFISKALNECG------FGILLNRRI 180
Query: 139 LTEKFGR---RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
T +F + + K+ L + G+ HR+LDD E+ K+C
Sbjct: 181 CTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAATEIFKYC 227
>gi|357390290|ref|YP_004905130.1| putative exonuclease [Kitasatospora setae KM-6054]
gi|311896766|dbj|BAJ29174.1| putative exonuclease [Kitasatospora setae KM-6054]
Length = 233
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 18/136 (13%)
Query: 53 FSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDC 112
F+TL+ P + + GI + V AP F ++A ++ +L GRV GH++ D
Sbjct: 39 FATLVDPGG----PVGPTHVHGIAQADVLGAPRFRQIAPRLLELLAGRVLVGHHV-TCDR 93
Query: 113 ARIKEAFAEIGKPAP-VPVGMIDSLGVLTEKFGRR----AGNMKMATLASYFGLGQ-QKH 166
A ++ FA IG P VP+ + T + RR AG ++ GLG H
Sbjct: 94 AFLEREFARIGVALPQVPL-------LCTMRLARRQLPEAGGYGLSACVDAAGLGWFPAH 146
Query: 167 RSLDDVRMNLEVLKHC 182
+L D R +E+L+HC
Sbjct: 147 TALGDARATVELLRHC 162
>gi|295839646|ref|ZP_06826579.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
gi|295827583|gb|EDY45420.2| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
Length = 331
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 10/132 (7%)
Query: 51 ESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ + TL+ P +D V + G+T E +E AP F E+A ++ L+GRV HN
Sbjct: 51 DHWYTLVNPERDPGPVWIH-----GLTSEVLEGAPLFPEIAGELSRRLDGRVLVAHNA-V 104
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRS 168
FD + + +A G APV + L ++ N K+ TLA++FG+ Q++ H +
Sbjct: 105 FDWSMLAREYARAGITAPVRRRLCTI--ALAKELALPLPNHKLETLAAHFGVEQRRAHHA 162
Query: 169 LDDVRMNLEVLK 180
LDD R+ E +
Sbjct: 163 LDDARVLAEAFR 174
>gi|424884110|ref|ZP_18307737.1| NUMOD1 domain protein [Enterococcus faecium R497]
gi|402933879|gb|EJX53282.1| NUMOD1 domain protein [Enterococcus faecium R497]
Length = 606
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 16/165 (9%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
+ FD+ETT + R ++E GA++ ++ V ++SF TL+ PK +A +S + I
Sbjct: 58 IAFDVETTGLNSSSDR--IVEIGAVLF--KEGVPIQSFGTLVNPK--VRIAASASAINNI 111
Query: 76 TREAVESAPEFEEVADKIFSI----LNGRV-WAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
T E + SAP +EV ++ L+G++ HN FD + F+ +G A +
Sbjct: 112 TNEMLNSAPNEQEVYPQLVEFLGDALDGKITMCAHNA-SFDFGFLSNTFSRLGYDAKIK- 169
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGL-GQQKHRSLDDVRM 174
+D+L L+ K + N K T+A YFGL HR+ D +
Sbjct: 170 -YVDTLS-LSRKHIKGIVNHKQETVAEYFGLINDTAHRAESDADI 212
>gi|376260767|ref|YP_005147487.1| DNA polymerase III subunit alpha [Clostridium sp. BNL1100]
gi|373944761|gb|AEY65682.1| DNA polymerase III, alpha chain [Clostridium sp. BNL1100]
Length = 1433
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 81/176 (46%), Gaps = 15/176 (8%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKS--SR 71
+ V FD+ETT + + E GA+ V ++V+ FS + P V++ S +
Sbjct: 421 DFVVFDIETTGLNPHQDK--ITEIGAVKVRNGQIVD--RFSAFVNP----GVSIPSFIVK 472
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GIT + V+ AP E+V ++ + G V HN FD IK+ +G+ P
Sbjct: 473 LTGITDDMVKDAPPIEQVLNEFMEFIQGSVLVAHN-ANFDVGFIKQNAKLMGEKVRNP-- 529
Query: 132 MIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHCATVL 186
ID+L L K G K+ +A + + + HR++DD ++ HC VL
Sbjct: 530 YIDTLE-LCRKMFPELGRYKLNIVAKHLKIELENHHRAVDDSMATAKIFMHCINVL 584
>gi|237654602|ref|YP_002890916.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
gi|237625849|gb|ACR02539.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
Length = 502
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 8/109 (7%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+ F D+ETT QR + E G + V + E +STL++P S + R G
Sbjct: 12 LAFVDIETTGG--PAQRESITEIGIVQVDEDGVRE---WSTLVRPA--SRIPETIQRLTG 64
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
I + V AP FE++AD++F L+GR++ HN RFD ++ AF G
Sbjct: 65 IDDDMVADAPRFEDIADEVFDRLDGRLFVAHNA-RFDHGHLRAAFRRAG 112
>gi|383641219|ref|ZP_09953625.1| DNA polymerase III subunit epsilon [Streptomyces chartreusis NRRL
12338]
Length = 331
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 9/137 (6%)
Query: 45 RKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAG 104
R VE ++T+ +D V + G+T EA+E AP F ++A++ + L RV
Sbjct: 51 RGEVEDHWYTTVNPERDPGPVWIH-----GLTSEALEGAPLFADIAEEFTARLRDRVLVA 105
Query: 105 HNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQ- 163
HN FD I +A + APV + L+++ G N K+ +LA++FG+ Q
Sbjct: 106 HNA-VFDWQMIAREYARAKREAPVRQRLCTI--ALSKELGLPLPNHKLESLAAHFGVVQR 162
Query: 164 QKHRSLDDVRMNLEVLK 180
Q H +LDD R+ E +
Sbjct: 163 QAHHALDDARVLAEAFR 179
>gi|291557938|emb|CBL35055.1| DNA polymerase III catalytic subunit, PolC type [Eubacterium
siraeum V10Sc8a]
Length = 1605
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 11/169 (6%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+I+ FD+ETT A +R + E GA+ + R + ++ FST + P + + +
Sbjct: 590 DIIVFDIETTGLHPANER--ITEIGAVKL--RNMEIVDRFSTFVNP--MMPIPSNITELT 643
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT + V AP E+VA F G + +FD + I+ A A + K PV +
Sbjct: 644 GITDDMVADAPT-EDVAVSDFMAFCGNSPVCAHNAKFDVSFIRSAAARMEKSFDNPV--V 700
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDDVRMNLEVLKH 181
D+L + + N K+ T+A YF LG HR++ D M + H
Sbjct: 701 DTLSIAKAAL-KGIKNYKLDTIAKYFKLGDFDHHRAVADAEMLCMIYMH 748
>gi|217077387|ref|YP_002335105.1| DNA polymerase III PolC [Thermosipho africanus TCF52B]
gi|217037242|gb|ACJ75764.1| DNA polymerase III, alpha subunit, Gram-positive type [Thermosipho
africanus TCF52B]
Length = 1365
Score = 57.8 bits (138), Expect = 5e-06, Method: Composition-based stats.
Identities = 51/173 (29%), Positives = 83/173 (47%), Gaps = 15/173 (8%)
Query: 18 FDLETTVPRRAGQRF-WVLEFGAIIVCPRKLVELESFSTLIKP-KDLSAVALKSSRCDGI 75
FDLETT RF ++EFGA+ K+++ +F + +KP KD++ K + GI
Sbjct: 351 FDLETT---GTNARFDEIIEFGAVKYKDGKIID--TFKSFVKPNKDINDFTQKLT---GI 402
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEI-GKPAPVPVGMID 134
T + ++ AP EEV K + G V HN FD I+E + ++ K +P +D
Sbjct: 403 TNDMLKDAPGIEEVVPKFLEFIEGTVLVAHNA-DFDYGFIREVYRKMYDKDLIMP--YLD 459
Query: 135 SLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVL 186
+L + + + + L YF LG K HR+ +D + E+ +L
Sbjct: 460 TLKLSKVILKGKVKSFGLGKLVEYFKLGPFKHHRAFEDASVTAELFGKLVELL 512
>gi|443622030|ref|ZP_21106574.1| hypothetical protein STVIR_0479 [Streptomyces viridochromogenes
Tue57]
gi|443344485|gb|ELS58583.1| hypothetical protein STVIR_0479 [Streptomyces viridochromogenes
Tue57]
Length = 636
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 83/178 (46%), Gaps = 13/178 (7%)
Query: 5 IPSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK-DLS 63
+P + D+ET+ +R VL I + P E FSTL+ P D
Sbjct: 10 VPDTGDYAHDWALVDVETS--GLMARRDRVLSVAVITIGPDGEQSGE-FSTLLNPGCDPG 66
Query: 64 AVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
V + G+T E ++ AP F++VA +I ++L RV HN +FD + FA
Sbjct: 67 PVEVH-----GLTVERLQGAPTFDQVAGRIGAMLQDRVLVAHNA-QFDYDFLAYEFARAR 120
Query: 124 KPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLK 180
PV M L + +MK+ TLA+++G+ QQ+ H +LDD R+ +L+
Sbjct: 121 MWLPVSQRMCTL--ALNRQVDPPTDDMKLGTLAAHYGVPQQRAHDALDDTRVLAGILR 176
>gi|302554712|ref|ZP_07307054.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736]
gi|302472330|gb|EFL35423.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736]
Length = 623
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 13/169 (7%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK-DLSAVALKSSRC 72
+ D+ET+ R R L AI+ + + F+TL+ P D V +
Sbjct: 31 DWALVDVETSGLRPGRDRVLSL---AILTLDARGNQTGEFATLLNPGCDPGPVHIH---- 83
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
G+T + AP FEE+A ++ ++L+GRV HN +FD + FA + PV +
Sbjct: 84 -GLTPARLAGAPTFEEIAPQVGALLSGRVLVAHNA-QFDYDFLAHEFAHVRSWVPVSRRL 141
Query: 133 IDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLK 180
L G ++K+ TLA+++G+ Q++ H + DDVR+ +L+
Sbjct: 142 CTL--ALNRLVGSATPDLKLGTLAAHYGVRQERAHDAQDDVRVLSGILR 188
>gi|326204061|ref|ZP_08193922.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM
2782]
gi|325985828|gb|EGD46663.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM
2782]
Length = 1433
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 15/176 (8%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKS--SR 71
+ V FD+ETT + + E GA+ V ++V+ FS + P V++ S +
Sbjct: 421 DFVVFDIETTGLNPHQDK--ITEIGAVKVRNGQIVD--RFSAFVNP----GVSIPSFIVK 472
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GIT + V+ AP E+V ++ + G V HN FD IK+ +G+ P
Sbjct: 473 LTGITDDMVKDAPPVEQVLNEFMEFIQGSVLVAHN-ANFDVGFIKQNAKLMGEKVKNP-- 529
Query: 132 MIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHCATVL 186
ID+L L K G K+ +A + + + HR++DD ++ HC +L
Sbjct: 530 YIDTLE-LCRKMFPELGRYKLNIVAKHLKIELENHHRAVDDSMATAKIFMHCINIL 584
>gi|383823222|ref|ZP_09978427.1| hypothetical protein MXEN_00380 [Mycobacterium xenopi RIVM700367]
gi|383339547|gb|EID17882.1| hypothetical protein MXEN_00380 [Mycobacterium xenopi RIVM700367]
Length = 626
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 79/171 (46%), Gaps = 14/171 (8%)
Query: 16 VFFDLETTVPRRAGQR----FWVLEFGAIIVCPRKLVELESFSTLIKP-KDLSAVALKSS 70
V DLETT R G + E GA+ V R L F+TL+ P +D+ A +
Sbjct: 25 VVVDLETTGGRATGAAETAADAITEIGAVKV--RGGAVLGEFATLVDPQRDIPA---QIV 79
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
R GIT V AP V F G V HN RFD A ++ A + P P P
Sbjct: 80 RLTGITTAMVCDAPTIGAVLPMFFDFARGAVLVAHNA-RFDLAFLRAAAERLHIPWPRPP 138
Query: 131 GMIDSLGVLTEKFGR-RAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVL 179
++ ++G+ R A ++++A LA F + Q HR+L D R +EVL
Sbjct: 139 -VLCTVGLARRVLSREEAPSVQLAALARLFAVASQPTHRALADARATVEVL 188
>gi|57242277|ref|ZP_00370216.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter
upsaliensis RM3195]
gi|57016957|gb|EAL53739.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter
upsaliensis RM3195]
Length = 260
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 87/187 (46%), Gaps = 20/187 (10%)
Query: 5 IPSQAAGTAEIVF--FDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDL 62
+ ++ + E VF D+E+T +GQ +LE GA+ + K EL+ F + +K +
Sbjct: 60 LKTRTSKIKEQVFCIVDIESTGGINSGQ---ILEIGAVKIQNHK--ELDRFESFVK---V 111
Query: 63 SAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEI 122
+ L ++ GI V+ AP V + LN V+ HN+ +FD I ++ E
Sbjct: 112 DEIPLNITKLTGIELNMVKDAPNLTRVLEAFRLFLNDSVFVAHNV-KFDYNFISKSLYEC 170
Query: 123 GKPAPVPVGMIDSLGVLTEKFGR---RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
G G++ + + T F + ++ + K+ TL + HR+L+D E+
Sbjct: 171 G------FGILLNRKICTVDFAQCCIQSSHYKLDTLKEILKIESIHHRALNDALAAAEIF 224
Query: 180 KHCATVL 186
K+C + L
Sbjct: 225 KYCLSKL 231
>gi|419759956|ref|ZP_14286241.1| DNA polymerase III PolC [Thermosipho africanus H17ap60334]
gi|407514995|gb|EKF49781.1| DNA polymerase III PolC [Thermosipho africanus H17ap60334]
Length = 1365
Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 51/173 (29%), Positives = 83/173 (47%), Gaps = 15/173 (8%)
Query: 18 FDLETTVPRRAGQRF-WVLEFGAIIVCPRKLVELESFSTLIKP-KDLSAVALKSSRCDGI 75
FDLETT RF ++EFGA+ K+++ +F + +KP KD++ K + GI
Sbjct: 351 FDLETT---GTNARFDEIIEFGAVKYKDGKIID--TFKSFVKPSKDINDFTQKLT---GI 402
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEI-GKPAPVPVGMID 134
T + ++ AP EEV K + G V HN FD I+E + ++ K +P +D
Sbjct: 403 TNDMLKDAPGIEEVVPKFLEFIEGTVLVAHNA-DFDYGFIREVYRKMYDKDLIMP--YLD 459
Query: 135 SLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVL 186
+L + + + + L YF LG K HR+ +D + E+ +L
Sbjct: 460 TLKLSRVILKGKVKSFGLGKLVEYFKLGPFKHHRAFEDASVTAELFGKLVELL 512
>gi|389865175|ref|YP_006367416.1| DNA-directed DNA polymerase [Modestobacter marinus]
gi|388487379|emb|CCH88937.1| DNA-directed DNA polymerase [Modestobacter marinus]
Length = 649
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 77/174 (44%), Gaps = 18/174 (10%)
Query: 13 AEIVFF--DLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALK 68
AE+ F DLETT P+ + + E GA+ V R L F TL+ P +
Sbjct: 50 AEVTFVVVDLETTGGSPKDSA----ITEIGAVKV--RGGQVLGEFQTLVDPG--REIPPY 101
Query: 69 SSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPV 128
S GIT V +AP + V G V HN FD ++ A E G P P
Sbjct: 102 ISVLTGITSMMVAAAPRIDSVLPAFLEFARGTVLVAHNA-PFDLGFLRAACEETGTPWP- 159
Query: 129 PVGMIDSLGVLTEKFGRR--AGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVL 179
P +D+ VL + R N K+ TLA +F Q HR+LDD R ++VL
Sbjct: 160 PFASVDT-AVLARRLLTRDEVPNCKLGTLAPFFSAETQPCHRALDDARATVDVL 212
>gi|260663059|ref|ZP_05863952.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
fermentum 28-3-CHN]
gi|260552680|gb|EEX25680.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
fermentum 28-3-CHN]
Length = 946
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 15/171 (8%)
Query: 19 DLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITR 77
DLETT + G R +++ G ++V +++ F T I P+ + V L + GI
Sbjct: 18 DLETTGTSVKTGSR--IIQIGCVLVQDGQVIN--EFETKINPR--TVVPLTIEQLTGIKN 71
Query: 78 EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLG 137
V+ AP FE+VA + S+L+ ++ HN+ FD + F G+ AP+ + ID++
Sbjct: 72 NDVKDAPLFEDVAPTLKSLLDDTIFVAHNV-NFDFPFLNAEFERAGE-APLTIPAIDTV- 128
Query: 138 VLTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDD----VRMNLEVLKHCA 183
L++ A + ++ L SY + Q H ++ D + +E+LK A
Sbjct: 129 TLSQILMPTAPSFRLRDLTSYLAIDHDQPHSAVSDAVATAHLLIELLKRLA 179
>gi|118473161|ref|YP_890494.1| DNA polymerase III subunit epsilon [Mycobacterium smegmatis str.
MC2 155]
gi|399990486|ref|YP_006570837.1| DNA polymerase III subunit epsilon [Mycobacterium smegmatis str.
MC2 155]
gi|118174448|gb|ABK75344.1| DNA polymerase III subunit epsilon [Mycobacterium smegmatis str.
MC2 155]
gi|399235049|gb|AFP42542.1| DNA polymerase III subunit epsilon [Mycobacterium smegmatis str.
MC2 155]
Length = 337
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 83/180 (46%), Gaps = 20/180 (11%)
Query: 6 PSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAV 65
P+ G+ V D+ETT R R ++ A+ V VE S S+L+ P V
Sbjct: 16 PADEPGSGWAVV-DVETTGFRPGQAR--IVSVAALAVGDDGSVE-HSMSSLLNP----GV 67
Query: 66 ALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKP 125
+ G+T E +E P F +V D++ +L GR HN FD + + +G
Sbjct: 68 DPGPTHVHGLTAEMLEGQPCFADVVDELIEVLRGRTLVAHNA-GFDYSFLAAEAELVGAE 126
Query: 126 APVPVGMIDSLGVLTEKFGRR----AGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLK 180
P+ M T + RR N+++ TLA+++G+ Q K H +LDD + ++LK
Sbjct: 127 LPIDTAMC------TVELARRLELGTENLRLETLAAHWGVTQMKPHDALDDALVLAQILK 180
>gi|395216281|ref|ZP_10401257.1| DNA polymerase III subunit epsilon [Pontibacter sp. BAB1700]
gi|394455433|gb|EJF09903.1| DNA polymerase III subunit epsilon [Pontibacter sp. BAB1700]
Length = 469
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 7/105 (6%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+ETT + R + E I +++V+ +STLI P+ + S+ GIT +
Sbjct: 6 DIETTGSQPTQDR--ITEIAIFIHDGKEIVD--KYSTLINPQ--RPIPYYISQLTGITDD 59
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
V+ AP+F EVA +I G V+ HN+ RFD + IK+ FA++G
Sbjct: 60 MVQDAPKFYEVAKEIVQFTEGMVFVAHNV-RFDYSFIKKEFADLG 103
>gi|184155667|ref|YP_001844007.1| helicase [Lactobacillus fermentum IFO 3956]
gi|183227011|dbj|BAG27527.1| helicase [Lactobacillus fermentum IFO 3956]
Length = 943
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 15/171 (8%)
Query: 19 DLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITR 77
DLETT + G R +++ G ++V +++ F T I P+ + V L + GI
Sbjct: 15 DLETTGTSVKTGSR--IIQIGCVLVQDGQVIN--EFETKINPR--TVVPLTIEQLTGIKN 68
Query: 78 EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLG 137
V+ AP FE+VA + S+L+ ++ HN+ FD + F G+ AP+ + ID++
Sbjct: 69 NDVKDAPLFEDVAPTLKSLLDDTIFVAHNV-NFDFPFLNAEFERAGE-APLTIPAIDTV- 125
Query: 138 VLTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDD----VRMNLEVLKHCA 183
L++ A + ++ L SY + Q H ++ D + +E+LK A
Sbjct: 126 TLSQILMPTAPSFRLRDLTSYLAIDHDQPHSAVSDAVATAHLLIELLKRLA 176
>gi|302550499|ref|ZP_07302841.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
DSM 40736]
gi|302468117|gb|EFL31210.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
DSM 40736]
Length = 330
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 17/186 (9%)
Query: 51 ESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ + T++ P +D V + G+T EA+E AP F+++A++ + L GRV HN
Sbjct: 55 DHWYTMVNPERDPGPVWIH-----GLTSEALEGAPLFQDIAEEFTTRLEGRVLVAHNA-V 108
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRS 168
FD I +A + PV + L+++ G N K+ +LA+++G+ Q++ H +
Sbjct: 109 FDWQMIAREYARAQREVPVRQRLCTI--ALSKELGLPLPNHKLESLAAHYGVVQRRAHHA 166
Query: 169 LDDVRMNLEVLKHC-------ATVLFLESSLPNTFNSNLQSSLTVTTRSRSNGKLPCREE 221
LDD R+ E + L L P T S+ ++ + ++ G P
Sbjct: 167 LDDARVLAEAFQPSLRAAAAGGVRLPLLECRPLTEWSDRPATPRIGQQAGYGGYRPTSWR 226
Query: 222 TSRKSP 227
SRK P
Sbjct: 227 PSRKRP 232
>gi|116514157|ref|YP_813063.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
[Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
gi|116093472|gb|ABJ58625.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
[Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
Length = 261
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 24/168 (14%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ FDLETT G++ +++ GA+ V R + FST + P L + S
Sbjct: 7 DYTVFDLETT-----GKK--IIQIGALKV--RDDQTVAKFSTYVNP--LEKINDYVSHLT 55
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GI+ ++AP +EV + GHNI FDC A+ G P P +
Sbjct: 56 GISNYQTDAAPLIDEVMPDFLDFVGDDTLVGHNILSFDC----NVLADNGYPVANP--KL 109
Query: 134 DSLGVLTEKFGRRA------GNMKMATLASYFGLGQQKHRSLDDVRMN 175
D+L +L + +R N++++T+ Y+G+ H ++ D N
Sbjct: 110 DTL-LLANSYKKRGLFADPIPNVRLSTMKEYYGININSHIAISDCITN 156
>gi|182439459|ref|YP_001827178.1| DNA polymerase III subunit epsilon [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326780122|ref|ZP_08239387.1| DNA polymerase III, epsilon subunit [Streptomyces griseus
XylebKG-1]
gi|178467975|dbj|BAG22495.1| putative DNA polymerase III epsilon subunit [Streptomyces griseus
subsp. griseus NBRC 13350]
gi|326660455|gb|EGE45301.1| DNA polymerase III, epsilon subunit [Streptomyces griseus
XylebKG-1]
Length = 341
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 89/196 (45%), Gaps = 38/196 (19%)
Query: 51 ESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ + TL+ P +D V + G+T + +E AP F EVA+++ + L RV HN
Sbjct: 51 DHWYTLVNPERDPGPVWIH-----GLTSDVLEGAPLFPEVAEELSARLADRVLVAHNA-A 104
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRS 168
FD + I +A APV + L ++ N K+A+LA++FG+ QQ+ H +
Sbjct: 105 FDWSMIAREYARASVVAPVEQRLCTI--ALAKELRLPLPNHKLASLAAHFGVVQQRAHHA 162
Query: 169 LDDVRMNLEVLKHCATVLFLESSLPNTFNSNLQSSLTVTTRSRSNGKLP---CREETSRK 225
LDD R+ L F +L ++ +R +LP CR T
Sbjct: 163 LDDARV-----------------LAEAFRPSLHAA------ARGGVRLPLLECRPLTEWS 199
Query: 226 SPPIS--LGYQRSAVP 239
P++ +GYQ S P
Sbjct: 200 DSPVTPRVGYQPSRQP 215
>gi|441216915|ref|ZP_20977195.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
smegmatis MKD8]
gi|440624235|gb|ELQ86101.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
smegmatis MKD8]
Length = 326
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 83/180 (46%), Gaps = 20/180 (11%)
Query: 6 PSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAV 65
P+ G+ V D+ETT R R ++ A+ V VE S S+L+ P V
Sbjct: 5 PADEPGSGWAVV-DVETTGFRPGQAR--IVSVAALAVGDDGSVE-HSMSSLLNP----GV 56
Query: 66 ALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKP 125
+ G+T E +E P F +V D++ +L GR HN FD + + +G
Sbjct: 57 DPGPTHVHGLTAEMLEGQPCFADVVDELIEVLRGRTLVAHNA-GFDYSFLAAEAELVGAE 115
Query: 126 APVPVGMIDSLGVLTEKFGRR----AGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLK 180
P+ M T + RR N+++ TLA+++G+ Q K H +LDD + ++LK
Sbjct: 116 LPIDTAMC------TVELARRLELGTENLRLETLAAHWGVTQMKPHDALDDALVLAQILK 169
>gi|375110632|ref|ZP_09756852.1| DNA polymerase III, epsilon subunit [Alishewanella jeotgali KCTC
22429]
gi|374569206|gb|EHR40369.1| DNA polymerase III, epsilon subunit [Alishewanella jeotgali KCTC
22429]
Length = 749
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 79/178 (44%), Gaps = 35/178 (19%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V D+ETT + R V+E GA+ V ++ L++FSTL+ P + SR GI
Sbjct: 585 VVLDVETTGGKAGTDR--VIEIGAVKVQAGEV--LDTFSTLLNPG--RTIPSFISRLTGI 638
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFA--EIGKPAPVPVGMI 133
+ V AP F ++ADK+ L G V+ HN +FD I+ FA +I P ++
Sbjct: 639 SNAMVADAPTFADIADKLAEFLRGAVFVAHNA-KFDYGFIRSEFARCDITFDMPQLCTVV 697
Query: 134 D-----------SLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLK 180
+ SLG L E+F + N HR+L D E+LK
Sbjct: 698 NMRRYYPGLQSYSLGKLCEEFEIKLNN---------------HHRALADATATAELLK 740
>gi|429202913|ref|ZP_19194274.1| BRCA1 C-terminal domain protein [Streptomyces ipomoeae 91-03]
gi|428661558|gb|EKX61053.1| BRCA1 C-terminal domain protein [Streptomyces ipomoeae 91-03]
Length = 414
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
G+T + +E AP F ++A++ S L RV HN FD + I +A + APV +
Sbjct: 152 GLTSDVLEGAPLFRDIAEEFASRLADRVLVAHNA-VFDWSMIAREYARVEIEAPVRQRLC 210
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLK 180
L+++ G N K+ TLA++FG+ QQ+ H +LDD R+ E +
Sbjct: 211 TI--ALSKELGLPLPNHKLETLAAHFGVVQQRAHHALDDARVLAEAFR 256
>gi|108801863|ref|YP_642060.1| DNA polymerase III subunit epsilon [Mycobacterium sp. MCS]
gi|119871016|ref|YP_940968.1| DNA polymerase III subunit epsilon [Mycobacterium sp. KMS]
gi|108772282|gb|ABG11004.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS]
gi|119697105|gb|ABL94178.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS]
Length = 330
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 20/180 (11%)
Query: 6 PSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAV 65
P+ GT V D+ET+ R R ++ A+ V VE +S +TL+ P V
Sbjct: 9 PAVDTGTGWAVV-DVETSGFRPGQAR--IVSLAALAVGDDGNVE-QSLATLLNP----GV 60
Query: 66 ALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKP 125
+ G+T E +E AP F +V + +L GR HN+ FD + + +G
Sbjct: 61 DPGPTHVHGLTAEMLEGAPRFGDVVADLAELLRGRTLVAHNV-GFDYSFLTAEAELVGAE 119
Query: 126 APVPVGMIDSLGVLTEKFGRRAG----NMKMATLASYFGLGQQK-HRSLDDVRMNLEVLK 180
P IDS+ + T + RR N+++ TLA+++G+ Q K H +LDD ++ ++LK
Sbjct: 120 LP-----IDSV-MCTVELARRLDLGTENLRLETLAAHWGVPQLKPHDALDDAQVLAQILK 173
>gi|227514853|ref|ZP_03944902.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
fermentum ATCC 14931]
gi|227086785|gb|EEI22097.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
fermentum ATCC 14931]
Length = 946
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 15/171 (8%)
Query: 19 DLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITR 77
DLETT + G R +++ G ++V +++ F T I P+ + V L + GI
Sbjct: 18 DLETTGTSVKTGSR--IIQIGCVLVQDGQVIN--EFETKINPR--TVVPLTIEQLTGIKN 71
Query: 78 EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLG 137
V+ AP FE+VA + S+L+ ++ HN+ FD + F G+ AP+ + ID++
Sbjct: 72 NDVKGAPLFEDVAPTLKSLLDDTIFVAHNV-NFDFPFLNAEFERAGE-APLTIPAIDTV- 128
Query: 138 VLTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDD----VRMNLEVLKHCA 183
L++ A + ++ L SY + Q H ++ D + +E+LK A
Sbjct: 129 TLSQILMPTAPSFRLRDLTSYLAIDHDQPHSAVSDAVATAHLLIELLKRLA 179
>gi|345850922|ref|ZP_08803909.1| DNA polymerase III subunit epsilon [Streptomyces zinciresistens
K42]
gi|345637579|gb|EGX59099.1| DNA polymerase III subunit epsilon [Streptomyces zinciresistens
K42]
Length = 331
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 10/132 (7%)
Query: 51 ESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ + TL+ P +D V + G+T EA+E AP F EVA+ + L RV HN
Sbjct: 55 DHWYTLVDPERDPGPVWIH-----GLTSEALEGAPLFHEVAEDFSARLADRVLVAHNA-V 108
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRS 168
FD I +A + APV + L+++ G N K+ +LA++FG+ Q++ H +
Sbjct: 109 FDWQMIAREYARAERRAPVRQRLCTI--ALSKELGLPLPNHKLESLAAHFGVVQRRAHHA 166
Query: 169 LDDVRMNLEVLK 180
LDD R+ E +
Sbjct: 167 LDDARVLAEAFR 178
>gi|433655010|ref|YP_007298718.1| DNA polymerase III, alpha chain [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433293199|gb|AGB19021.1| DNA polymerase III, alpha chain [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 1410
Score = 57.0 bits (136), Expect = 9e-06, Method: Composition-based stats.
Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 13/178 (7%)
Query: 5 IPSQAAGTAE--IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDL 62
+ A+GT + V FD+ETT ++E GA+ + ++V+ +F T + P+
Sbjct: 387 VSGNASGTIDDSFVVFDIETTGLSSINDS--IIEIGAVKIKDCRIVD--TFETFVNPQ-- 440
Query: 63 SAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEI 122
++ ++ GIT + V+ P +EV K + G HN FD IK +
Sbjct: 441 IHISNFITKLTGITDDMVKRYPPIDEVLPKFLEFIKGSTLVAHNA-NFDVTFIKTKAKNL 499
Query: 123 GKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
G PV +D+L L+ N K+ T+A + G+ + HR++DD R E+
Sbjct: 500 GIEVDNPV--LDTLE-LSRHMYENLKNYKLDTVAQHLGVSLENHHRAVDDARATAEIF 554
>gi|320531410|ref|ZP_08032377.1| GIY-YIG catalytic domain protein, partial [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320136382|gb|EFW28363.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 171
str. F0337]
Length = 299
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 84/182 (46%), Gaps = 18/182 (9%)
Query: 13 AEIVFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
A V DLETT P G R + E GA+ V R L FSTL+ P A+ + +
Sbjct: 20 ATFVVVDLETTGGAP---GARS-LTEIGAVKV--RGGQVLADFSTLVNPG--VAIPAQIT 71
Query: 71 RCDGITREAVESAPEFEEVADKIFS----ILNGRVWAGHNIRRFDCARIKEAFAEIGKPA 126
GIT V AP + S + + V HN R FD ++ A A +G
Sbjct: 72 MLTGITNAMVAGAPGVSTCVEAFLSWADLLADDVVLVAHNAR-FDVGHLRGAAAALGLEW 130
Query: 127 PVPVGMIDSLGVLTEKFGR-RAGNMKMATLASYFG-LGQQKHRSLDDVRMNLEVLKHCAT 184
P P ++D+L + + + R N K+ TLA++ G + HR+LDD R ++VL
Sbjct: 131 PEP-RVLDTLALARKAWTRSEVPNHKLGTLAAFVGSRTRPSHRALDDARATVDVLHAALE 189
Query: 185 VL 186
V+
Sbjct: 190 VM 191
>gi|104774090|ref|YP_619070.1| exonuclease [Lactobacillus delbrueckii subsp. bulgaricus ATCC
11842]
gi|103423171|emb|CAI97964.1| Putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
ATCC 11842]
Length = 261
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 24/168 (14%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ FDLETT G++ +++ GA+ V R + FST + P L + S
Sbjct: 7 DYTVFDLETT-----GKK--IIQIGALKV--RDDQTVAKFSTYVNP--LEKINDYVSHLT 55
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GI+ ++AP +EV + GHNI FDC A+ G P P +
Sbjct: 56 GISNYQTDAAPLIDEVMPDFLDFVGDDTLVGHNILSFDC----NVLADNGYPVANP--KL 109
Query: 134 DSLGVLTEKFGRRA------GNMKMATLASYFGLGQQKHRSLDDVRMN 175
D+L +L + +R N++++TL Y+G+ H ++ D N
Sbjct: 110 DTL-LLANSYKKRGLFADPIPNVRLSTLKEYYGININFHIAISDCITN 156
>gi|94985918|ref|YP_605282.1| DNA polymerase III subunit epsilon [Deinococcus geothermalis DSM
11300]
gi|94556199|gb|ABF46113.1| DNA polymerase III, epsilon subunit [Deinococcus geothermalis DSM
11300]
Length = 180
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 20/174 (11%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSA----VALKSS 70
+V FDLETT + +R ++E GA+ V ++VE E F TL++P++ + + ++
Sbjct: 3 VVVFDLETT--GLSPERDAIVEIGALRVVDGRVVESERFETLVRPQNAAGEVVPIPWRAQ 60
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
R GI+ V+ APE +V + + A HNI FD + ++ A G P
Sbjct: 61 RVHGISDAMVQDAPELGQVLPEFLDFVGRSAVAAHNI-GFDSSFMRAAARRCGLVWAPPA 119
Query: 131 GMIDSLGVLTEKFGRRA----GNMKMATLASYFGLG---QQKHRSLDDVRMNLE 177
T + RRA + LA GL +HRSL DV++ E
Sbjct: 120 EYC------TVQLSRRAFPRERTHNLDVLAQRLGLSFAPGGRHRSLGDVQVTAE 167
>gi|257055123|ref|YP_003132955.1| hypothetical protein Svir_10720 [Saccharomonospora viridis DSM
43017]
gi|256584995|gb|ACU96128.1| exonuclease, DNA polymerase III, epsilon subunit family
[Saccharomonospora viridis DSM 43017]
Length = 570
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 80/168 (47%), Gaps = 14/168 (8%)
Query: 16 VFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
V DLETT P AG + E GA+ V ++V F+TL+ P + +
Sbjct: 18 VVVDLETTGVTPDGAG----ITEIGAVKVRGGEVVG--EFATLVDPG--VPIPPQIVALT 69
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V SAP E+V ++G V HN FD + +K A G P P ++
Sbjct: 70 GITPAMVRSAPRIEQVLPTFLEFVSGAVLVAHNA-GFDVSFLKAACQTHGYEWPKPT-VV 127
Query: 134 DSLGVLTEKFGRR-AGNMKMATLASYFGL-GQQKHRSLDDVRMNLEVL 179
+L + GR+ +++TLAS FG KHR+LDD + ++VL
Sbjct: 128 CTLKLARRVLGRQETRGHRLSTLASLFGARSTPKHRALDDAKATVDVL 175
>gi|226356768|ref|YP_002786508.1| DNA polymerase III subunit epsilon [Deinococcus deserti VCD115]
gi|226318758|gb|ACO46754.1| putative DNA-directed DNA polymerase (DNA polymerase III, epsilon
subunit) [Deinococcus deserti VCD115]
Length = 202
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 18/170 (10%)
Query: 15 IVFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSA----VALK 68
+V FDLETT P R G ++E GA+ V ++ E + TL++P + + +
Sbjct: 3 VVVFDLETTGLSPERDG----IVEIGALRVVNGQVHEHLRYETLVRPTNAAGERLMIPWH 58
Query: 69 SSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPV 128
+ R GI+ E V SAP EEV + + HN+ FDC ++ +G
Sbjct: 59 AQRVHGISNEMVRSAPTIEEVLPEFLEFVGDSAVVAHNV-GFDCGFMRAQARRLGM-VWA 116
Query: 129 PVGMIDSLGVLTEKFGR-RAGNMKMATLASYFGLG---QQKHRSLDDVRM 174
P G ++ + F + RA N+ + LA GL +HRS DV++
Sbjct: 117 PAGEHCTVQLSRRAFPKERAHNLTV--LAERLGLNFAPGGRHRSFGDVQV 164
>gi|126437831|ref|YP_001073522.1| DNA polymerase III subunit epsilon [Mycobacterium sp. JLS]
gi|126237631|gb|ABO01032.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. JLS]
Length = 330
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 20/180 (11%)
Query: 6 PSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAV 65
P+ GT V D+ET+ R R ++ A+ V VE +S +TL+ P V
Sbjct: 9 PAVDTGTGWAVV-DVETSGFRPGQAR--IVSLAALAVGDDGNVE-QSLATLLNP----GV 60
Query: 66 ALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKP 125
+ G+T E +E AP F ++ + +L GR HN+ FD + + +G
Sbjct: 61 DPGPTHVHGLTAEMLEGAPRFGDIVADLAELLRGRTLVAHNV-GFDYSFLTAEAELVGAE 119
Query: 126 APVPVGMIDSLGVLTEKFGRRAG----NMKMATLASYFGLGQQK-HRSLDDVRMNLEVLK 180
P IDS+ + T + RR N+++ TLA+++G+ Q K H +LDD ++ ++LK
Sbjct: 120 LP-----IDSV-MCTVELARRLDLGTENLRLETLAAHWGVPQLKPHDALDDAQVLAQILK 173
>gi|296269280|ref|YP_003651912.1| DNA polymerase III subunit epsilon [Thermobispora bispora DSM
43833]
gi|296092067|gb|ADG88019.1| DNA polymerase III, epsilon subunit [Thermobispora bispora DSM
43833]
Length = 574
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 76/168 (45%), Gaps = 12/168 (7%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
V FDLETT A + E GA+ VC ++ F+TLI P + S G
Sbjct: 20 FVVFDLETTGGSPAED--AITEIGAVKVCGGQV--RGEFATLIDPG--RPIPPFISVLTG 73
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPV-PVGMI 133
IT V +AP+ +V + G HN FD ++ A AE G P P PV +
Sbjct: 74 ITDAMVVAAPKLPQVLPAFLEFIRGATLVAHNA-PFDLGFLRAACAEYGYPPPANPV--V 130
Query: 134 DSLGVLTEKFGR-RAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVL 179
D+ + R + K+ATLA YF + HR+L D R ++VL
Sbjct: 131 DTADLARRMLTRDETPDCKLATLARYFRSATEPCHRALADARATVDVL 178
>gi|304316867|ref|YP_003852012.1| DNA polymerase III subunit alpha [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778369|gb|ADL68928.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 1410
Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 13/178 (7%)
Query: 5 IPSQAAGTAE--IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDL 62
+ A+GT + V FD+ETT ++E GA+ + ++V+ +F T + P+
Sbjct: 387 VSGNASGTIDDSFVVFDIETTGLSSINDS--IIEIGAVKIKDCQIVD--TFETFVNPQ-- 440
Query: 63 SAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEI 122
++ ++ GIT + V+ P +EV K + G HN FD IK +
Sbjct: 441 IHISNFITKLTGITDDMVKRYPPIDEVLPKFLEFIKGSTLVAHNA-NFDVTFIKTKAKNL 499
Query: 123 GKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
G PV +D+L L+ N K+ T+A + G+ + HR++DD R E+
Sbjct: 500 GIEVDNPV--LDTLE-LSRHMYENLKNYKLDTVAQHLGVSLENHHRAVDDARATAEIF 554
>gi|365902782|ref|ZP_09440605.1| Rad3-related DNA helicase [Lactobacillus malefermentans KCTC 3548]
Length = 950
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 10/153 (6%)
Query: 19 DLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITR 77
DLETT G R +++ G + V K++ FST I P+ ++ R GIT
Sbjct: 11 DLETTGTSLTEGGR--IIQIGCVFVKNNKIIN--HFSTDINPE--MSIPDPIVRLTGITN 64
Query: 78 EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLG 137
+ V AP F++VA+ ++ +L G + HN+ FD I F +G P P+ + +D++
Sbjct: 65 KRVAKAPIFDDVAEVVYGLLTGTTFVAHNV-NFDFPFINREFERVGFP-PLDIPAVDTVQ 122
Query: 138 VLTEKFGRRAGNMKMATLASYFGLGQQKHRSLD 170
L++ A + ++ L+ F + S D
Sbjct: 123 -LSQILLPTATSYRLQDLSHLFNISHHNPHSAD 154
>gi|124002773|ref|ZP_01687625.1| DNA polymerase III epsilon chain [Microscilla marina ATCC 23134]
gi|123992001|gb|EAY31388.1| DNA polymerase III epsilon chain [Microscilla marina ATCC 23134]
Length = 270
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+VFFDLETT A R ++E+ I P E+E I P+ + ++SS G
Sbjct: 11 LVFFDLETTGTNIAKDR--IVEWAFIKALPNG--EIEKDVKKINPE--MPIPIESSLVHG 64
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
I E V+ AP F+ +A + L G AG+NI RFD + E F +G
Sbjct: 65 IYDEHVKDAPTFKSIAKNLVKFLEGCDLAGYNIVRFDVPVLVEEFLRVG 113
>gi|156741527|ref|YP_001431656.1| DNA polymerase III subunit epsilon [Roseiflexus castenholzii DSM
13941]
gi|156232855|gb|ABU57638.1| DNA polymerase III, epsilon subunit [Roseiflexus castenholzii DSM
13941]
Length = 944
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 11/134 (8%)
Query: 50 LESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+E+F TL++P+ ++ L SSR GIT E + AP F EVA + + L GHN+ R
Sbjct: 36 IETFDTLVQPR--HSLPLNSSRLTGITAEMLAGAPRFSEVAPRFAAFLKNYPLVGHNV-R 92
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGL-GQQKHRS 168
FD ++ + +PA D+ + T R +++ LA G+ + HR+
Sbjct: 93 FDINMLQAQGMRLPQPA------FDTFELATLLMPRTPA-YRLSALAETLGIVHDEAHRA 145
Query: 169 LDDVRMNLEVLKHC 182
L D + +V H
Sbjct: 146 LSDADVTRQVFLHL 159
>gi|345014219|ref|YP_004816573.1| DNA polymerase III subunit epsilon [Streptomyces violaceusniger Tu
4113]
gi|344040568|gb|AEM86293.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
4113]
Length = 328
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 10/132 (7%)
Query: 51 ESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ + TL+ P +D V + G+T E +E AP F E+A ++ L RV HN
Sbjct: 58 DHWYTLVNPQRDPGPVWIH-----GLTEEVLEGAPRFPEIAGELAERLADRVLVAHNA-A 111
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRS 168
FD + + +A APV + L+++ G N K+ TLA+++G+ Q++ H +
Sbjct: 112 FDWSMLAREYARSKSAAPVRQRLCTI--ALSKELGLPLPNHKLETLAAHYGVVQRRAHHA 169
Query: 169 LDDVRMNLEVLK 180
LDD R+ E +
Sbjct: 170 LDDARVLAETFR 181
>gi|419705654|ref|ZP_14233190.1| DNA polymerase III PolC [Mycoplasma canis UFG4]
gi|384396044|gb|EIE42467.1| DNA polymerase III PolC [Mycoplasma canis UFG4]
Length = 1441
Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 47/132 (35%), Positives = 68/132 (51%), Gaps = 12/132 (9%)
Query: 7 SQAAGTAEIVFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKD-LSA 64
+Q A V FDLETT + + G ++EFGA I+ ++V+ F IKP++ LS
Sbjct: 402 NQKISEASYVVFDLETTSLSPKIGD---IIEFGASIIENGQIVDSVQF--FIKPREKLSD 456
Query: 65 VALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGK 124
+ ++ IT E VE+ E EE D+IF IL+ +V HN FD + + F + K
Sbjct: 457 FTINLTK---ITNEMVENGIEIEEALDRIFKILDNKVAVAHNA-NFDMHFLLQKFKDHNK 512
Query: 125 PAPVPVGMIDSL 136
P IDSL
Sbjct: 513 KIP-NTTFIDSL 523
>gi|384937691|ref|ZP_10029387.1| DNA polymerase III PolC [Mycoplasma canis UF31]
gi|384394597|gb|EIE41037.1| DNA polymerase III PolC [Mycoplasma canis UF31]
Length = 1441
Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 47/132 (35%), Positives = 68/132 (51%), Gaps = 12/132 (9%)
Query: 7 SQAAGTAEIVFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKD-LSA 64
+Q A V FDLETT + + G ++EFGA I+ ++V+ F IKP++ LS
Sbjct: 402 NQKISEASYVVFDLETTSLSPKIGD---IIEFGASIIENGQIVDSVQF--FIKPREKLSD 456
Query: 65 VALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGK 124
+ ++ IT E VE+ E EE D+IF IL+ +V HN FD + + F + K
Sbjct: 457 FTINLTK---ITNEMVENGIEIEEALDRIFKILDNKVAVAHNA-NFDMHFLLQKFKDHNK 512
Query: 125 PAPVPVGMIDSL 136
P IDSL
Sbjct: 513 KIP-NTTFIDSL 523
>gi|386839372|ref|YP_006244430.1| DNA polymerase III subunit epsilon [Streptomyces hygroscopicus
subsp. jinggangensis 5008]
gi|374099673|gb|AEY88557.1| DNA polymerase III subunit epsilon [Streptomyces hygroscopicus
subsp. jinggangensis 5008]
gi|451792665|gb|AGF62714.1| DNA polymerase III subunit epsilon [Streptomyces hygroscopicus
subsp. jinggangensis TL01]
Length = 319
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 10/132 (7%)
Query: 51 ESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ + TL+ P +D V + G+T E + AP F ++A++ + L GRV HN
Sbjct: 47 DHWYTLVNPERDPGPVWIH-----GLTSETLAGAPLFADIAEEFAARLEGRVLVAHNA-V 100
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRS 168
FD I +A + + APV + L+++ N K+ +LA++FG+ QQ+ H +
Sbjct: 101 FDWQMIAREYARVRREAPVRQRLCTI--ALSKELALPLPNHKLESLAAHFGVVQQRAHHA 158
Query: 169 LDDVRMNLEVLK 180
LDD R+ E +
Sbjct: 159 LDDARVLAEAFR 170
>gi|433462953|ref|ZP_20420521.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Halobacillus sp. BAB-2008]
gi|432188090|gb|ELK45308.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Halobacillus sp. BAB-2008]
Length = 932
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 19 DLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITR 77
DLETT G R ++E G ++V LE FS+L+ P+ + S GI
Sbjct: 8 DLETTGNAASKGDR--IIEIGVVVVTEEGRT-LEEFSSLVYPE--REIPPFVSSLTGIKE 62
Query: 78 EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLG 137
E V AP F E+A+ I + + HNI FD + + F G P P+ +ID++
Sbjct: 63 EDVLEAPLFSEIAEDIHPLFDHAYIVAHNI-EFDLGFLNDEFKRCGLP-PLHNPIIDTV- 119
Query: 138 VLTEKFGR----RAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVL 179
+F R + K+ LA GLG + HR+L D ++ ++L
Sbjct: 120 ----EFARLMLPTSPTFKLGQLAERLGLGHDRPHRALSDAQVTSDLL 162
>gi|220927905|ref|YP_002504814.1| DNA polymerase III PolC [Clostridium cellulolyticum H10]
gi|219998233|gb|ACL74834.1| DNA polymerase III, alpha subunit [Clostridium cellulolyticum H10]
Length = 1433
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 15/176 (8%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKS--SR 71
+ V FD+ETT R + E GA+ V ++V+ FS + P V++ S +
Sbjct: 421 DFVVFDIETTGLNPQQDR--ITEIGAVKVRNGQIVD--RFSAFVNP----GVSIPSFIVK 472
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GIT + V+ AP E+V ++ + G V HN FD IK IG+ P
Sbjct: 473 LTGITNDMVKDAPPIEQVLNEFMEFIQGSVLVAHN-ANFDVGFIKHNAKIIGEKVKNP-- 529
Query: 132 MIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHCATVL 186
+D+L L K G K+ +A + + + HR++DD ++ HC L
Sbjct: 530 YLDTLE-LCRKMFPELGRYKLNIVAKHLKIELENHHRAVDDSMATAKIFIHCLNEL 584
>gi|225374652|ref|ZP_03751873.1| hypothetical protein ROSEINA2194_00271 [Roseburia inulinivorans DSM
16841]
gi|225213511|gb|EEG95865.1| hypothetical protein ROSEINA2194_00271 [Roseburia inulinivorans DSM
16841]
Length = 228
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 16/185 (8%)
Query: 3 GFIPSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDL 62
G++P + V FDLETT V+E A+ V K+VE FS L+ PK
Sbjct: 12 GYVP-------DYVLFDLETTGTSCIYDE--VIEISAVKVRSGKVVE--EFSQLVNPK-- 58
Query: 63 SAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEI 122
+ +S + I+ E V + P+F +V + + + GHNI+ FD + +
Sbjct: 59 RPIPYAASMVNHISDEMVANEPDFGQVLPEFLTFAGDDILVGHNIQTFDMKFLYRDCERL 118
Query: 123 GKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLKH 181
+ + +D+L V F + +++ LA ++G+ + HR+L D +MN +V ++
Sbjct: 119 FQ-QKLTNDYVDTLRVAKLCFPEWR-HRRLSDLAEHYGISTRGAHRALTDCKMNQQVFEY 176
Query: 182 CATVL 186
A L
Sbjct: 177 LAKEL 181
>gi|29832981|ref|NP_827615.1| DNA polymerase III subunit epsilon [Streptomyces avermitilis
MA-4680]
gi|29610102|dbj|BAC74150.1| putative DNA polymerase III epsilon subunit [Streptomyces
avermitilis MA-4680]
Length = 325
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 10/132 (7%)
Query: 51 ESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ + T++ P +D V + G+T + +E AP FE++A + S L RV HN
Sbjct: 54 DHWYTMVNPERDPGPVWIH-----GLTSDVLEGAPLFEDIAAEFASRLADRVLVAHNA-V 107
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRS 168
FD + I +A APV + L+++ G N K+ +LA++FG+ QQ+ H +
Sbjct: 108 FDWSMIAREYARAKSQAPVRQRLCTI--ALSKELGLPLPNHKLESLAAHFGVVQQRAHHA 165
Query: 169 LDDVRMNLEVLK 180
LDD R+ E +
Sbjct: 166 LDDARVLAEAFR 177
>gi|333983689|ref|YP_004512899.1| DNA polymerase III subunit epsilon [Methylomonas methanica MC09]
gi|333807730|gb|AEG00400.1| DNA polymerase III, epsilon subunit [Methylomonas methanica MC09]
Length = 466
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+ F DLETT R + E G ++V E+ +S L+ P+ + L + G
Sbjct: 6 LAFVDLETTGASATQDR--ITEIGIVLVDDG---EVREWSQLVYPQ--MRIPLFIEQMTG 58
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKP 125
I+ VE AP F E+A ++ +L GR++ HN RFD +K F IG P
Sbjct: 59 ISNSMVEQAPPFAEIAQQVEQLLQGRLFIAHNA-RFDYGFLKNEFKRIGMP 108
>gi|365868304|ref|ZP_09407856.1| DNA polymerase III subunit epsilon [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|414579599|ref|ZP_11436742.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 5S-1215]
gi|420880711|ref|ZP_15344078.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 5S-0304]
gi|420885788|ref|ZP_15349148.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 5S-0421]
gi|420889541|ref|ZP_15352889.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 5S-0422]
gi|420892414|ref|ZP_15355758.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 5S-0708]
gi|420900622|ref|ZP_15363953.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 5S-0817]
gi|420906493|ref|ZP_15369811.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 5S-1212]
gi|420970197|ref|ZP_15433398.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 5S-0921]
gi|421047140|ref|ZP_15510138.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense CCUG 48898 = JCM 15300]
gi|364000718|gb|EHM21915.1| DNA polymerase III subunit epsilon [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|392081551|gb|EIU07377.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 5S-0421]
gi|392085620|gb|EIU11445.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 5S-0304]
gi|392087289|gb|EIU13111.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 5S-0422]
gi|392097983|gb|EIU23777.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 5S-0817]
gi|392104397|gb|EIU30183.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 5S-1212]
gi|392108295|gb|EIU34075.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 5S-0708]
gi|392124123|gb|EIU49884.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 5S-1215]
gi|392176135|gb|EIV01796.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 5S-0921]
gi|392243692|gb|EIV69175.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense CCUG 48898]
Length = 327
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 33/179 (18%)
Query: 51 ESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRF 110
+S +L+ P V + G+T E +E PEF ++A + ++L GR HN+ F
Sbjct: 47 DSVVSLLNP----GVDPGPTHVHGLTPEMLEGQPEFSDIAPDLIALLRGRTLVAHNV-GF 101
Query: 111 DCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRSL 169
D + + +G A +P + LT + N+++ TLA+++G+ Q K H +
Sbjct: 102 DYSFLAAEAELVG--AELPTEAVMCTVELTRRLELDTPNLRLETLAAHWGVEQLKAHDAY 159
Query: 170 DDVRMNLEVLKHCATVLFLESSLPNTFNSNLQSSLTVTTRSRSNGK-LPCREETSRKSP 227
DD R+ EVL V R+R G LP RE T ++ P
Sbjct: 160 DDARVLAEVLP------------------------KVLERARERGTWLPIRETTRKRWP 194
>gi|406965868|gb|EKD91455.1| hypothetical protein ACD_30C00005G0023 [uncultured bacterium]
Length = 472
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 100/239 (41%), Gaps = 43/239 (17%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
++ F D+ETT R + + ++E G + V KL+E S+ TL+ P+ + +
Sbjct: 7 KLAFVDIETTGCRISDR---IIEIGILRVENHKLIE--SYQTLLNPQ--CHIPEEIVELT 59
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFA--EIG-------- 123
GIT +E+AP F EV I+S+L ++ HN+ RFD + +K F EI
Sbjct: 60 GITPSQLEAAPTFYEVKKDIYSLLEDCIFVAHNV-RFDLSFLKNEFKRWEISFSPKQICT 118
Query: 124 ---KPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLK 180
A P +L + E+F + N +HR+ DD ++ +
Sbjct: 119 VKLSRALYPEHRHHNLDSIIERFKFKVKN---------------RHRAFDDAKVLWDFYS 163
Query: 181 HCATVLFLESSLPNTFNSNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQRSAVP 239
H L E+ L N + + S+ + LP KSP + + Y + P
Sbjct: 164 HLTKKLPKETLLLNLKKAMKRPSIPIKISEDILDSLP-------KSPGVYIFYGENRAP 215
>gi|456389692|gb|EMF55087.1| exonuclease [Streptomyces bottropensis ATCC 25435]
Length = 331
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 10/132 (7%)
Query: 51 ESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ + TL+ P +D V + G+T + +E AP F E+A + S L RV HN
Sbjct: 54 DHWYTLVNPERDPGPVWIH-----GLTSDVLEGAPLFREIAQEFSSRLADRVLVAHNA-V 107
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRS 168
FD + I +A APV + L+++ G N K+ +LA++FG+ QQ+ H +
Sbjct: 108 FDWSMIAREYARAETEAPVRQRLCTI--ALSKELGLPLPNHKLESLAAHFGVVQQRAHHA 165
Query: 169 LDDVRMNLEVLK 180
LDD R+ E +
Sbjct: 166 LDDARVLAEAFR 177
>gi|421859002|ref|ZP_16291251.1| DNA polymerase III [Paenibacillus popilliae ATCC 14706]
gi|410831521|dbj|GAC41688.1| DNA polymerase III [Paenibacillus popilliae ATCC 14706]
Length = 309
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 11/172 (6%)
Query: 14 EIVFFDLETTVPRRAGQRFW-VLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
+ DLETT RF +LE AI V +++++ F +L+KP+ + +
Sbjct: 23 DYTILDLETT---GLDPRFEEILELSAIKVRNNEVIDI--FQSLVKPE--HRIGDFITNL 75
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
GIT E V+ AP+ E + V HN FD I + F+ P
Sbjct: 76 TGITNEMVKDAPKIENALPNFLRFIGDDVVVIHN-AHFDVNFIYD-FSLTITGTPFSNNF 133
Query: 133 IDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCAT 184
+D+L L+ K N ++ TLA YF L HRSLDD + +E+ + +
Sbjct: 134 VDTLR-LSRKLFPELKNHRLKTLADYFELTLPNHRSLDDCKAAIELYQFISN 184
>gi|169627433|ref|YP_001701082.1| DNA polymerase III subunit epsilon [Mycobacterium abscessus ATCC
19977]
gi|397678418|ref|YP_006519953.1| DNA polymerase III polC-type [Mycobacterium massiliense str. GO 06]
gi|418250580|ref|ZP_12876824.1| DNA polymerase III subunit epsilon [Mycobacterium abscessus 47J26]
gi|418418535|ref|ZP_12991720.1| DNA polymerase III subunit epsilon [Mycobacterium abscessus subsp.
bolletii BD]
gi|419710975|ref|ZP_14238439.1| DNA polymerase III subunit epsilon [Mycobacterium abscessus M93]
gi|419713740|ref|ZP_14241164.1| DNA polymerase III subunit epsilon [Mycobacterium abscessus M94]
gi|420862142|ref|ZP_15325538.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 4S-0303]
gi|420866727|ref|ZP_15330114.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 4S-0726-RA]
gi|420876030|ref|ZP_15339406.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 4S-0726-RB]
gi|420912963|ref|ZP_15376275.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 6G-0125-R]
gi|420914159|ref|ZP_15377468.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 6G-0125-S]
gi|420921241|ref|ZP_15384538.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 6G-0728-S]
gi|420925050|ref|ZP_15388342.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 6G-1108]
gi|420934438|ref|ZP_15397711.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 1S-151-0930]
gi|420935682|ref|ZP_15398952.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 1S-152-0914]
gi|420944698|ref|ZP_15407953.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 1S-153-0915]
gi|420949390|ref|ZP_15412639.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 1S-154-0310]
gi|420949987|ref|ZP_15413234.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 2B-0626]
gi|420958976|ref|ZP_15422210.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 2B-0107]
gi|420959518|ref|ZP_15422749.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 2B-1231]
gi|420964541|ref|ZP_15427762.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 3A-0810-R]
gi|420975396|ref|ZP_15438584.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 6G-0212]
gi|420980777|ref|ZP_15443950.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 6G-0728-R]
gi|420994908|ref|ZP_15458054.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 2B-0307]
gi|420995873|ref|ZP_15459016.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 2B-0912-R]
gi|421000389|ref|ZP_15463522.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 2B-0912-S]
gi|421005221|ref|ZP_15468340.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 3A-0119-R]
gi|421010772|ref|ZP_15473874.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 3A-0122-R]
gi|421021500|ref|ZP_15484553.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 3A-0731]
gi|421026593|ref|ZP_15489633.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 3A-0930-R]
gi|421032385|ref|ZP_15495411.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 3A-0930-S]
gi|421038112|ref|ZP_15501123.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 4S-0116-R]
gi|421046377|ref|ZP_15509377.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 4S-0116-S]
gi|169239400|emb|CAM60428.1| DNA polymerase III, epsilon subunit (DnaQ) [Mycobacterium
abscessus]
gi|353449816|gb|EHB98212.1| DNA polymerase III subunit epsilon [Mycobacterium abscessus 47J26]
gi|364001708|gb|EHM22900.1| DNA polymerase III subunit epsilon [Mycobacterium abscessus subsp.
bolletii BD]
gi|382939865|gb|EIC64191.1| DNA polymerase III subunit epsilon [Mycobacterium abscessus M93]
gi|382946438|gb|EIC70724.1| DNA polymerase III subunit epsilon [Mycobacterium abscessus M94]
gi|392067505|gb|EIT93353.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 4S-0726-RB]
gi|392075058|gb|EIU00892.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 4S-0726-RA]
gi|392077303|gb|EIU03134.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 4S-0303]
gi|392114957|gb|EIU40726.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 6G-0125-R]
gi|392125653|gb|EIU51406.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 6G-0125-S]
gi|392131077|gb|EIU56823.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 6G-0728-S]
gi|392132850|gb|EIU58595.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 1S-151-0930]
gi|392146304|gb|EIU72028.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 1S-153-0915]
gi|392147189|gb|EIU72910.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 1S-152-0914]
gi|392147458|gb|EIU73178.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 6G-1108]
gi|392150431|gb|EIU76144.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 1S-154-0310]
gi|392165073|gb|EIU90760.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 2B-0626]
gi|392175522|gb|EIV01184.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 6G-0212]
gi|392176575|gb|EIV02233.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 6G-0728-R]
gi|392181010|gb|EIV06662.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 2B-0307]
gi|392191693|gb|EIV17318.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 2B-0912-R]
gi|392202543|gb|EIV28139.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 2B-0912-S]
gi|392204716|gb|EIV30301.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 3A-0119-R]
gi|392214815|gb|EIV40364.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 3A-0122-R]
gi|392218343|gb|EIV43875.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 3A-0731]
gi|392226326|gb|EIV51840.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 4S-0116-R]
gi|392232918|gb|EIV58418.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 3A-0930-S]
gi|392235830|gb|EIV61328.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 4S-0116-S]
gi|392236511|gb|EIV62007.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 3A-0930-R]
gi|392248702|gb|EIV74178.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 2B-0107]
gi|392256730|gb|EIV82184.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
massiliense 2B-1231]
gi|392258818|gb|EIV84260.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 3A-0810-R]
gi|395456683|gb|AFN62346.1| DNA polymerase III polC-type [Mycobacterium massiliense str. GO 06]
Length = 327
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 33/179 (18%)
Query: 51 ESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRF 110
+S +L+ P V + G+T E +E PEF ++A + ++L GR HN+ F
Sbjct: 47 DSVVSLLNP----GVDPGPTHVHGLTPEMLEGQPEFSDIAPDLIALLRGRTLVAHNV-GF 101
Query: 111 DCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRSL 169
D + + +G A +P + LT + N+++ TLA+++G+ Q K H +
Sbjct: 102 DYSFLAAEAELVG--AELPTEAVMCTVELTRRLELDTPNLRLETLAAHWGVEQLKAHDAY 159
Query: 170 DDVRMNLEVLKHCATVLFLESSLPNTFNSNLQSSLTVTTRSRSNGK-LPCREETSRKSP 227
DD R+ EVL V R+R G LP RE T ++ P
Sbjct: 160 DDARVLAEVLP------------------------KVLERARERGTWLPIRETTRKRWP 194
>gi|374851682|dbj|BAL54635.1| hypothetical protein HGMM_F17D01C22 [uncultured Acidobacteria
bacterium]
Length = 278
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 20/174 (11%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPR--KLVELESFSTLIKPKDLSAVALKSSR 71
E V D+ETT R + R V+E A+ + +L +E F+TL+ P+ A+ R
Sbjct: 84 EYVVVDVETTGMRPSADR--VIEVAAVRLARSDGRLRIVEEFATLVNPE--RALPPGIIR 139
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDC----ARIKEAFA-EIGKPA 126
GIT E V AP F E+A+++ +L RV HN RFD A + AFA +G P
Sbjct: 140 LTGITEEMVARAPRFAEIAEEMAVLLGPRVLVAHNA-RFDLAFLNAEFQRAFARRLGNP- 197
Query: 127 PVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVL 179
+ +L V + + N ++ T+A Y G+ ++ HR+ D ++L
Sbjct: 198 -----HLCTLAV-SRRLFPELPNHRLPTVARYLGVEMERWHRARSDAWTTAQIL 245
>gi|291287762|ref|YP_003504578.1| DNA polymerase III subunit epsilon [Denitrovibrio acetiphilus DSM
12809]
gi|290884922|gb|ADD68622.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM
12809]
Length = 205
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 14/172 (8%)
Query: 18 FDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVEL-ESFSTLIKPKDLSAVALKSSRCDGI 75
FD ETT + G R +LE GA+ V P +++L +SF TLI PK + + + GI
Sbjct: 14 FDTETTGMSPDKGAR--LLEIGAVKVKPGLVLDLQDSFCTLINPK--APIPYNAYSVHGI 69
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
+ V PE ++V FS + A HN RFDC+ + AE P+ ++D+
Sbjct: 70 STAMVADKPEIKDVLPGFFSFTENTIIAAHN-ARFDCSFVSHHSAECCIVNPM-TKIVDT 127
Query: 136 LGVLTEKFGRRAGNMKMATLASYFGL-----GQQKHRSLDDVRMNLEVLKHC 182
+ L + + + L YF + +HR+L D +L C
Sbjct: 128 VK-LAKSAHSGLKSYSLGNLIHYFSMDIPLPDTYRHRALYDAAHTALLLTIC 178
>gi|407643470|ref|YP_006807229.1| hypothetical protein O3I_011470 [Nocardia brasiliensis ATCC 700358]
gi|407306354|gb|AFU00255.1| hypothetical protein O3I_011470 [Nocardia brasiliensis ATCC 700358]
Length = 728
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 76/172 (44%), Gaps = 22/172 (12%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V DLETT + E GA+ V R L F+TL+ P AV + GI
Sbjct: 29 VVVDLETTGTSPGADA--ITEIGAVKV--RGGEVLGEFATLVNPG--RAVPPAIVQVTGI 82
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
T V +AP+ + V G V HN RFD A ++ A A+ P P S
Sbjct: 83 TTAMVYAAPKIDAVLPGFLEFAAGAVLVAHNA-RFDMAFLRAAAAQCETPWP-------S 134
Query: 136 LGVL-TEKFGRR------AGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVL 179
VL T K RR A +++++ LA G Q HR+LDD R ++VL
Sbjct: 135 ATVLCTVKLARRVLGRDEAPSVRLSVLAQLLGASTQPTHRALDDARATVDVL 186
>gi|326773509|ref|ZP_08232792.1| DNA polymerase III epsilon subunit, partial [Actinomyces viscosus
C505]
gi|326636739|gb|EGE37642.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505]
Length = 465
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 98/213 (46%), Gaps = 22/213 (10%)
Query: 13 AEIVFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
A V DLETT P G R V E GA+ V R L FSTL+ P A+ + +
Sbjct: 20 ATFVVVDLETTGGAP---GARS-VTEIGAVKV--RGGQVLAEFSTLVNPG--VAIPAQIT 71
Query: 71 RCDGITREAVESAPEF----EEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPA 126
GIT V AP E D + + + HN R FD ++ A A +G
Sbjct: 72 MLTGITNAMVAGAPGVRTCVEAFLDWADLLADDVILVAHNAR-FDVGHLRGAAAAVGLEW 130
Query: 127 PVPVGMIDSLGVLTEKFGR-RAGNMKMATLASYFG-LGQQKHRSLDDVRMNLEVLKHCAT 184
P P ++D+L + + R N K+ TLA++ G + HR+LDD R ++VL H A
Sbjct: 131 PEP-RVLDTLALARRAWTRSEVPNHKLGTLAAFVGSQTRPTHRALDDARATVDVL-HAA- 187
Query: 185 VLFLESSLPNTFNSNLQS-SLTVTTRSRSNGKL 216
L + + L T +L + S V R R+ +L
Sbjct: 188 -LEVMAPLGVTHLEDLSTASDPVPARRRAKSRL 219
>gi|239986791|ref|ZP_04707455.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
11379]
gi|291443743|ref|ZP_06583133.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
15998]
gi|291346690|gb|EFE73594.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
15998]
Length = 343
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 10/132 (7%)
Query: 51 ESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ + TL+ P +D V + G+T + +E AP F EVA+++ + L RV HN
Sbjct: 53 DHWYTLVNPERDPGPVWIH-----GLTSDVLEGAPLFPEVAEELSARLADRVLVAHNA-A 106
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRS 168
FD + I +A APV + L ++ N K+A+LA++FG+ QQ+ H +
Sbjct: 107 FDWSMIAREYARASVVAPVEQRLCTI--ALAKELRLPLPNHKLASLAAHFGVVQQQAHHA 164
Query: 169 LDDVRMNLEVLK 180
LDD R+ E +
Sbjct: 165 LDDARVLAEAFR 176
>gi|449143588|ref|ZP_21774411.1| DNA polymerase III subunit epsilon [Vibrio mimicus CAIM 602]
gi|449080586|gb|EMB51497.1| DNA polymerase III subunit epsilon [Vibrio mimicus CAIM 602]
Length = 247
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 99/234 (42%), Gaps = 29/234 (12%)
Query: 7 SQAAGTAEIVFFDLETTVPRRAGQRFW----VLEFGAIIVCPRKLVELESFSTLIKPKDL 62
S A IV D ETT R G + ++E GA+ + RKL F +KP
Sbjct: 4 SNNAEYQRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTG-RHFHVYLKPD-- 60
Query: 63 SAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEI 122
+ L++ GIT E + PE+++V D+ + G HN FD + FA++
Sbjct: 61 REIQLEAIEVHGITDEFLRDKPEYKDVHDEFLDFIKGAELVAHNA-PFDVGFMDYEFAKL 119
Query: 123 GKPAPVPVG---MIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
G + D+L + F + N+ + L +G+ HR+L ++ E+L
Sbjct: 120 GGSVVKTTDFCKVTDTLAMAKRIFPGKRNNLDI--LCERYGI-DNSHRTLHGALLDAEIL 176
Query: 180 KHCATVLFLESSLPNTFNSNLQSSLTVTTRSRSNGKLPC----REETSRKSPPI 229
A V L + Q+SL + ++++G+L R + RK+ +
Sbjct: 177 ---ADVYLLMTG--------GQTSLQFSAATQNSGELDAESLKRSRSERKALKV 219
>gi|379735550|ref|YP_005329056.1| DNA-directed DNA polymerase [Blastococcus saxobsidens DD2]
gi|378783357|emb|CCG03025.1| DNA-directed DNA polymerase [Blastococcus saxobsidens DD2]
Length = 593
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 73/169 (43%), Gaps = 16/169 (9%)
Query: 16 VFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
V DLETT P+ + + E GA+ V R L F TL+ P A+ S
Sbjct: 28 VVVDLETTGGSPKDSA----ITEIGAVKV--RGGQVLGEFQTLVDPG--HAIPPYISVLT 79
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V +AP V G V HN FD +K A AE G P +
Sbjct: 80 GITSSMVAAAPRIGSVLPSFLEFARGAVLVAHNA-PFDLGFLKAACAENGLAWPA-AASV 137
Query: 134 DSLGVLTEKFGRR--AGNMKMATLASYF-GLGQQKHRSLDDVRMNLEVL 179
D+ VL + R N K+ATLA YF HR+LDD R ++VL
Sbjct: 138 DT-AVLARRLLSRDEVPNCKLATLAPYFSATTSPTHRALDDARATVDVL 185
>gi|420989481|ref|ZP_15452637.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 4S-0206]
gi|421015877|ref|ZP_15478949.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 3A-0122-S]
gi|392183760|gb|EIV09411.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 4S-0206]
gi|392217817|gb|EIV43350.1| DNA-directed DNA polymerase III epsilon subunit [Mycobacterium
abscessus 3A-0122-S]
Length = 313
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 33/179 (18%)
Query: 51 ESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRF 110
+S +L+ P V + G+T E +E PEF ++A + ++L GR HN+ F
Sbjct: 33 DSVVSLLNP----GVDPGPTHVHGLTPEMLEGQPEFSDIAPDLIALLRGRTLVAHNV-GF 87
Query: 111 DCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRSL 169
D + + +G A +P + LT + N+++ TLA+++G+ Q K H +
Sbjct: 88 DYSFLAAEAELVG--AELPTEAVMCTVELTRRLELDTPNLRLETLAAHWGVEQLKAHDAY 145
Query: 170 DDVRMNLEVLKHCATVLFLESSLPNTFNSNLQSSLTVTTRSRSNGK-LPCREETSRKSP 227
DD R+ EVL V R+R G LP RE T ++ P
Sbjct: 146 DDARVLAEVLP------------------------KVLERARERGTWLPIRETTRKRWP 180
>gi|363423809|ref|ZP_09311867.1| DNA polymerase III [Rhodococcus pyridinivorans AK37]
gi|359731365|gb|EHK80421.1| DNA polymerase III [Rhodococcus pyridinivorans AK37]
Length = 600
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 85/181 (46%), Gaps = 14/181 (7%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK-DLSAVALKSSRCDG 74
V D+ET+ R R VL A+++ VE E FSTL+ P D V + +
Sbjct: 21 VVVDVETSGVRSNAHR--VLSVAALVLREDGSVEQE-FSTLVDPGCDPGPVHIHN----- 72
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
+TRE + +P FE++A ++ IL+G HN FD + F G P +
Sbjct: 73 LTRERLTGSPRFEDIAGELAGILDGATIVAHNA-SFDYGFLDAEFRRAGTSLPAEHRLCT 131
Query: 135 SLGVLTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDDVRMNLEV-LKHCATVLFLESSL 192
L+ + N ++ATLA ++ + Q Q+H + DD R+ E+ L+ A L+ L
Sbjct: 132 L--ALSRRLELDVPNFRLATLAQHWQVHQLQEHDAYDDARVLSEIFLRSAAMADNLQLPL 189
Query: 193 P 193
P
Sbjct: 190 P 190
>gi|429205238|ref|ZP_19196515.1| DinG family ATP-dependent helicase [Lactobacillus saerimneri 30a]
gi|428146310|gb|EKW98549.1| DinG family ATP-dependent helicase [Lactobacillus saerimneri 30a]
Length = 931
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 11/155 (7%)
Query: 19 DLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITR 77
DLE+T G R +++F + V K++ +F+TLI P+ + ++ GIT
Sbjct: 11 DLESTGTSFETGDR--IIQFSCVFVKNNKIIN--TFNTLINPE--MKIPRETQNLTGITN 64
Query: 78 EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLG 137
+ V +AP FE+VA I+S+L + HNI +FD + +G P + + ID++
Sbjct: 65 KDVRNAPYFEDVAGTIYSLLQDTNFVAHNI-QFDYRFLNSELERVGYPM-LDLACIDTVQ 122
Query: 138 VLTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDD 171
L + + ++A L S G+ ++ HR+ D
Sbjct: 123 -LAQVLFPTLSSYRLAELGSLLGIENKRPHRADSD 156
>gi|116694719|ref|YP_728930.1| exconuclease [Ralstonia eutropha H16]
gi|113529218|emb|CAJ95565.1| Exconuclease [Ralstonia eutropha H16]
Length = 528
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
IVF DLETT QR + E G + V P ++E + TL+ P ++ R G
Sbjct: 30 IVFVDLETTGA--DAQRDRITEIGVVEVGPDGIIE---WDTLLDPG--MSIPPFIQRMTG 82
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
IT E V P FE +A+ + L GR++ HN RFD +K AF G
Sbjct: 83 ITEEMVRGQPSFESLAESLAERLQGRLFVAHNA-RFDYGFLKNAFRRAG 130
>gi|339322030|ref|YP_004680924.1| excinuclease Cho [Cupriavidus necator N-1]
gi|338168638|gb|AEI79692.1| excinuclease Cho [Cupriavidus necator N-1]
Length = 531
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 89/208 (42%), Gaps = 32/208 (15%)
Query: 9 AAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALK 68
AA + IVF DLETT QR + E G + V P ++E + TL+ P ++
Sbjct: 27 AALSRPIVFVDLETT--GADAQRDRITEIGVVEVGPDGIIE---WDTLLDPG--MSIPPF 79
Query: 69 SSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG----K 124
R GIT E V P FE +A+ + L GR+ HN RFD +K AF G
Sbjct: 80 IQRMTGITEEMVHGQPTFESLAESLAERLQGRLLVAHNA-RFDYGFLKNAFRRAGVTFRA 138
Query: 125 PAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQ-KHRSLDDVRM--------- 174
V + SL E+ G + L + FGL + +HR+L D +
Sbjct: 139 DVLCTVRLSRSLFPSVERHG-------LDALIARFGLTPKGRHRALADAELLWQFWQKIH 191
Query: 175 ---NLEVLKHCATVLFLESSLPNTFNSN 199
++E+++ L +SLP +
Sbjct: 192 ATYSVELVESAVRTLVRRASLPAGLDET 219
>gi|294628658|ref|ZP_06707218.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
gi|292831991|gb|EFF90340.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
Length = 328
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 69/132 (52%), Gaps = 10/132 (7%)
Query: 51 ESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ + TL+ P +D V + G+T EA+E AP F ++A++ + L RV HN
Sbjct: 55 DHWYTLVNPERDPGPVWIH-----GLTSEALEGAPLFTDIAEEFAARLADRVLVAHNA-V 108
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRS 168
FD I +A + APV + L+++ G N K+ +LA++FG+ Q++ H +
Sbjct: 109 FDWQMIAREYARARREAPVRQRLCTI--ALSKELGLPLPNHKLESLAAHFGVVQRRAHHA 166
Query: 169 LDDVRMNLEVLK 180
LDD R+ E +
Sbjct: 167 LDDARVLAEAFR 178
>gi|357389587|ref|YP_004904426.1| putative exonuclease [Kitasatospora setae KM-6054]
gi|311896062|dbj|BAJ28470.1| putative exonuclease [Kitasatospora setae KM-6054]
Length = 617
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 18/128 (14%)
Query: 53 FSTLIKPK-DLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFD 111
++TL+ P D V + G+T E + AP FE+VAD+I ++L+GRV HN +FD
Sbjct: 54 YTTLLDPGCDPGPVHVH-----GLTAERLRGAPAFEQVADRIGALLDGRVMVAHNA-QFD 107
Query: 112 CARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRR----AGNMKMATLASYFGLGQQK-H 166
+ FA PV + + T RR + +A+LA+Y+G+ Q + H
Sbjct: 108 YDFLAHEFARARLHLPV------ARRLCTLALNRRVEPPVAGLSLASLAAYYGVPQTRAH 161
Query: 167 RSLDDVRM 174
+LDD R+
Sbjct: 162 DALDDTRV 169
>gi|397171166|ref|ZP_10494575.1| DNA polymerase III, epsilon subunit [Alishewanella aestuarii B11]
gi|396087065|gb|EJI84666.1| DNA polymerase III, epsilon subunit [Alishewanella aestuarii B11]
Length = 749
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 79/178 (44%), Gaps = 35/178 (19%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V D+ETT + R V+E GA+ V ++ L++FSTL+ P + SR GI
Sbjct: 585 VVLDVETTGGKAGTDR--VIEIGAVKVQAGEV--LDTFSTLLNPG--RTIPSFISRLTGI 638
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFA--EIGKPAPVPVGMI 133
+ V AP F ++ADK+ L G V+ HN +FD I+ FA +I P ++
Sbjct: 639 SNAMVADAPIFADIADKLAEFLRGAVFVAHNA-KFDYGFIRSEFARCDITFDMPQLCTVV 697
Query: 134 D-----------SLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLK 180
+ SLG L E+F + N HR+L D E+LK
Sbjct: 698 NMRRYYPGLQSYSLGKLCEEFEIKLNN---------------HHRALADATATSELLK 740
>gi|406837572|ref|ZP_11097166.1| ATP-dependent helicase DinG [Lactobacillus vini DSM 20605]
Length = 930
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/152 (27%), Positives = 80/152 (52%), Gaps = 8/152 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+ETT + GQR +++F + + R+++ F+TL+ P+ ++V+L+ + GIT
Sbjct: 11 DVETTEVQPDGQR-RLIQFSCVFLKNRRVIN--KFNTLVNPQ--TSVSLEIQQLTGITPA 65
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
+ AP F ++A I+S+L V+ HNI FD + + +G P+ + + ID++
Sbjct: 66 QLNKAPLFSDLAATIYSLLQNTVFVAHNI-NFDYNFLNQELERVGYPS-LELEGIDTVQ- 122
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQKHRSLD 170
L + + K++ L+SY L + D
Sbjct: 123 LAQVLLPTLPSFKLSYLSSYLNLDHRHPHQAD 154
>gi|309791196|ref|ZP_07685728.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides
DG-6]
gi|308226758|gb|EFO80454.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6]
Length = 272
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 11/159 (6%)
Query: 15 IVFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+VFFDLETT + RAG R L A++ VE + + ++P L + +++ +
Sbjct: 14 LVFFDLETTGLDLRAGHRVCEL---ALLRVRGAAVE-DYLGSALRPDRL--LDPEAAAVN 67
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
G + AP F VA ++ + +G V HN+ FD A + A IG+P P+ +
Sbjct: 68 GFQDAELRGAPRFASVAGRVQRMAHGAVLIAHNLP-FDMAFLNAELARIGQP---PLASV 123
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDV 172
++ + R + +A LA +FGL + HR+L DV
Sbjct: 124 TLDTLVLARRLLRRPSYSLAALAEHFGLPRPTHRALADV 162
>gi|310828723|ref|YP_003961080.1| DNA polymerase III subunit epsilon [Eubacterium limosum KIST612]
gi|308740457|gb|ADO38117.1| DNA polymerase III subunit epsilon [Eubacterium limosum KIST612]
Length = 461
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 10/169 (5%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V D+ETT + ++E GA+ + +++ SF T +KP ++++ K + GI
Sbjct: 147 VMVDVETTGLDPSNNE--IIEIGALKITDGNVID--SFKTFVKP--INSIPSKITSITGI 200
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAE-IGKPAPVPVGMID 134
T V AP + V + S L+ G+N+ FD + +++ + G + ID
Sbjct: 201 TNNMVADAPSIKTVLMEFKSFLSDNYIVGYNV-LFDIKFLHDSYYKNFGNCDWLSHDYID 259
Query: 135 SLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHC 182
L K+ + A N K+ T+ Y + ++ HR+L D LE +C
Sbjct: 260 VLR-FCRKYFKSAPNHKLTTMIDYLNIDVKEHHRALADCYATLECYNNC 307
>gi|440224893|ref|YP_007331984.1| DNA polymerase III, epsilon subunit [Rhizobium tropici CIAT 899]
gi|440036404|gb|AGB69438.1| DNA polymerase III, epsilon subunit [Rhizobium tropici CIAT 899]
Length = 238
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT E+++ P FEEVADKI + W HN FD + FA +G+P +P +I
Sbjct: 58 GITDESLKDKPPFEEVADKILNFFGDAKWIAHNA-TFDMGFVNAEFARLGRPPILPDMVI 116
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQ---KHRSLDDVRMNLEV 178
D+L + K G + L +G+ KH +L D + EV
Sbjct: 117 DTLAMARRK--HPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEV 162
>gi|222084205|ref|YP_002542731.1| DNA polymerase III subunit epsilon [Agrobacterium radiobacter K84]
gi|398380841|ref|ZP_10538955.1| DNA polymerase III, epsilon subunit [Rhizobium sp. AP16]
gi|221721653|gb|ACM24809.1| DNA polymerase III, epsilon subunit [Agrobacterium radiobacter K84]
gi|397720272|gb|EJK80830.1| DNA polymerase III, epsilon subunit [Rhizobium sp. AP16]
Length = 236
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 84/201 (41%), Gaps = 12/201 (5%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
+ FD ETT R ++E G I + ++ I P D V + GI
Sbjct: 4 IIFDTETTGLDNKADR--IIEIGGIELF-NHFPTGKTLHLYINPGD-RKVHPDALAVHGI 59
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
T E+++ P F +VAD+I + G W HN FD + F +G+P +P +ID+
Sbjct: 60 TDESLKDKPPFADVADEILAFFEGAKWIAHNA-TFDMGFVNAEFNRLGRPPILPDMVIDT 118
Query: 136 LGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSLPNT 195
L + K G + L +G+ HR+ ++ E+L +++E
Sbjct: 119 LAMARRK--HPMGPNSLDALCRRYGI-DNSHRTRHGALLDSELLAE----VYIEMIGGRQ 171
Query: 196 FNSNLQSSLTVTTRSRSNGKL 216
L SS + RSR N +
Sbjct: 172 TALGLGSSNGSSARSRQNNDV 192
>gi|315604561|ref|ZP_07879624.1| DNA polymerase III [Actinomyces sp. oral taxon 180 str. F0310]
gi|315313573|gb|EFU61627.1| DNA polymerase III [Actinomyces sp. oral taxon 180 str. F0310]
Length = 525
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 79/183 (43%), Gaps = 28/183 (15%)
Query: 10 AGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKS 69
A T V DLETT G R + E GA+ V +L E FS+L++P + +
Sbjct: 5 ASTGSWVVVDLETT---GLGARAEITEIGAVRVREGRLCE--EFSSLVRP--VGPIPPAI 57
Query: 70 SRCDGITREAVESAPEFEEVADKIFSILNGRVWAG-----------HNIRRFDCARIKEA 118
+ GIT V A V D+ + WAG HN FD ++ A
Sbjct: 58 TALTGITPAMVRGADPIATVLDRFLT------WAGFEAKDPVVLVAHNAP-FDIGFLRRA 110
Query: 119 FAEIGKPAPVPVGMIDSLGVLTEKFGRR-AGNMKMATLASYFGLGQ-QKHRSLDDVRMNL 176
A P P V ++D+L + R N K+AT+ASYFG HR+L D R
Sbjct: 111 AAACSLPWPR-VRVVDTLALARLALPRPIVRNHKLATVASYFGTATVPGHRALGDARATA 169
Query: 177 EVL 179
EVL
Sbjct: 170 EVL 172
>gi|258621021|ref|ZP_05716055.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM573]
gi|262166312|ref|ZP_06034049.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223]
gi|424807447|ref|ZP_18232855.1| DNA polymerase III, epsilon subunit [Vibrio mimicus SX-4]
gi|258586409|gb|EEW11124.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM573]
gi|262026028|gb|EEY44696.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223]
gi|342325389|gb|EGU21169.1| DNA polymerase III, epsilon subunit [Vibrio mimicus SX-4]
Length = 247
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 99/234 (42%), Gaps = 29/234 (12%)
Query: 7 SQAAGTAEIVFFDLETTVPRRAGQRFW----VLEFGAIIVCPRKLVELESFSTLIKPKDL 62
S A IV D ETT R G + ++E GA+ + RKL F +KP
Sbjct: 4 SNNAEYQRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTG-RHFHVYLKPD-- 60
Query: 63 SAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEI 122
+ L++ GIT E + PE+++V D+ + G HN FD + FA++
Sbjct: 61 REIQLEAIEVHGITDEFLRDKPEYKDVHDEFLDFIKGAELVAHNA-PFDVGFMDYEFAKL 119
Query: 123 GKPAPVPVG---MIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
G + D+L + F + N+ + L +G+ HR+L ++ E+L
Sbjct: 120 GGSVVKTTDFCKVTDTLAMAKRIFPGKRNNLDI--LCERYGI-DNSHRTLHGALLDAEIL 176
Query: 180 KHCATVLFLESSLPNTFNSNLQSSLTVTTRSRSNGKLPC----REETSRKSPPI 229
A V L + Q+SL + ++++G+L R + RK+ +
Sbjct: 177 ---ADVYLLMTG--------GQTSLQFSAATQNSGELGAESLKRSRSERKALKV 219
>gi|374723782|gb|EHR75862.1| DNA polymerase III subunit epsilon [uncultured marine group II
euryarchaeote]
Length = 298
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 7/135 (5%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
++ FDLETT R L A+I E+ + L+ P+ + +S G
Sbjct: 36 VLAFDLETTGVSTQYDRIVQL---ALIGADETGGEVH-YERLVNPR--RPIPAGASGVHG 89
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
I V S +F VAD++ +++ G + GHN+R+FD A ++ + +GK P P ++D
Sbjct: 90 IYDHDVRSKGDFSTVADEVAALIEGAIIVGHNVRKFDMAMLESEYLRLGKRTPKPKAIMD 149
Query: 135 SLGVLTE-KFGRRAG 148
+ ++ K GR G
Sbjct: 150 TYELVRRLKIGRPHG 164
>gi|403507612|ref|YP_006639250.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Nocardiopsis alba ATCC BAA-2165]
gi|402800627|gb|AFR08037.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Nocardiopsis alba ATCC BAA-2165]
Length = 570
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 23/174 (13%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V DLETT + R + E GA+ V R L+ ++TL+ P L + + + GI
Sbjct: 23 VVVDLETT--GTSASRSRITEVGAVRV--RDGEILDEYTTLVDPDTL--IPAEVTLLTGI 76
Query: 76 TREAVESAPEFEEVADKIFSILN---GRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
T+ V +AP E+V ++ + L V HN FD +K A P P +
Sbjct: 77 TQSMVATAPRIEKVLPELLAFLTEDPDSVLVAHNA-PFDTGFLKAACEREALEWPAP-PV 134
Query: 133 IDSLGVLTEKFGR------RAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
+D+L + R + N ++ TLA+Y+G HR+LDD R ++VL
Sbjct: 135 VDTL-----RLARALLPVPKVRNHRLGTLAAYYGASVTPDHRALDDARATVDVL 183
>gi|259046854|ref|ZP_05737255.1| DnaQ family exonuclease/DinG family helicase [Granulicatella
adiacens ATCC 49175]
gi|259036477|gb|EEW37732.1| DnaQ family exonuclease/DinG family helicase [Granulicatella
adiacens ATCC 49175]
Length = 875
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 19 DLETTVPR-RAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITR 77
DLETT P+ G R + +FG ++ K+VE + + I P+ ++ + G+T
Sbjct: 9 DLETTGPKYEQGDR--IFQFGCTLITDHKIVEHITLN--INPE--QSIPFEIQLLTGVTN 62
Query: 78 EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAE-IGKPAPVPVGMIDSL 136
VE AP F+EVA I+++L GR HN+ FD I A E +G VP ID++
Sbjct: 63 ADVEKAPYFDEVAMNIYNLLEGRTLVAHNV-GFDGPFIITALKEALGIELEVP--FIDTV 119
>gi|375088852|ref|ZP_09735190.1| putative DnaQ family exonuclease/DinG family helicase
[Dolosigranulum pigrum ATCC 51524]
gi|374561817|gb|EHR33156.1| putative DnaQ family exonuclease/DinG family helicase
[Dolosigranulum pigrum ATCC 51524]
Length = 923
Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 50 LESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
LE F+TL+ P L V ++ GIT++ V+ AP FEE+A I +L ++ HN+
Sbjct: 39 LEEFNTLVNP--LKQVPVRIQELTGITQQDVDYAPLFEEIAPIIHELLQETIFVAHNV-A 95
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRS 168
FD + E F +G P+ + + +D++ VL++ A + L + G H +
Sbjct: 96 FDFEFLNEQFQRVGLPS-LEIPAMDTV-VLSQILFPNANYYNLQELTEWLGYDLDTPHDA 153
Query: 169 LDDVRMNLEVLKH 181
L D R + +L+
Sbjct: 154 LYDARATVFLLRQ 166
>gi|365875678|ref|ZP_09415204.1| DNA polymerase iii, epsilon subunit [Elizabethkingia anophelis Ag1]
gi|442587456|ref|ZP_21006273.1| 3'-5' exonuclease [Elizabethkingia anophelis R26]
gi|365756523|gb|EHM98436.1| DNA polymerase iii, epsilon subunit [Elizabethkingia anophelis Ag1]
gi|442562897|gb|ELR80115.1| 3'-5' exonuclease [Elizabethkingia anophelis R26]
Length = 407
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 69/136 (50%), Gaps = 7/136 (5%)
Query: 50 LESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
++ F +L+ P+D+ ++ + GIT + V++AP+F E+A +I I G V GHN+
Sbjct: 33 VDQFISLVNPEDV--ISPYVQKLTGITAKMVKTAPKFHEIAKRIVEITEGTVIVGHNV-E 89
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRS 168
FD I+++F +G ID++ L +K + + L+ G+ +HR+
Sbjct: 90 FDYRMIRQSFHRLGYNYERET--IDTIP-LAKKLIPNEESYSLGKLSKSLGIPLTDRHRA 146
Query: 169 LDDVRMNLEVLKHCAT 184
D R LE+ K T
Sbjct: 147 SGDARATLELFKILLT 162
>gi|392418621|ref|YP_006455226.1| exonuclease, DNA polymerase III, epsilon subunit family
[Mycobacterium chubuense NBB4]
gi|390618397|gb|AFM19547.1| exonuclease, DNA polymerase III, epsilon subunit family
[Mycobacterium chubuense NBB4]
Length = 332
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 84/180 (46%), Gaps = 20/180 (11%)
Query: 6 PSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAV 65
P+ A G+ V D+ET+ R R ++ A+ + VE +SF +L+ P V
Sbjct: 12 PADAPGSGWAVV-DVETSGFRPGQAR--IVSIAALALSDDGNVE-KSFYSLLDP----GV 63
Query: 66 ALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKP 125
+ G+T E + P F +VA + +L GR HN+ FD + + +
Sbjct: 64 DPGPTHVHGLTAEMLAGQPTFADVAGDLVEVLRGRTLVAHNV-GFDYSFLAAEAEMVSAE 122
Query: 126 APVPVGMIDSLGVLTEKFGRRAG----NMKMATLASYFGLGQQK-HRSLDDVRMNLEVLK 180
PV M T + GRR N+K+ TLA+++G+ Q + H +LDD + ++LK
Sbjct: 123 LPVETVMC------TVELGRRLDLGLENLKLETLAAHWGVTQMRPHDALDDAMVLAQILK 176
>gi|403739617|ref|ZP_10951998.1| hypothetical protein AUCHE_16_01910 [Austwickia chelonae NBRC
105200]
gi|403190820|dbj|GAB78768.1| hypothetical protein AUCHE_16_01910 [Austwickia chelonae NBRC
105200]
Length = 481
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 77/163 (47%), Gaps = 24/163 (14%)
Query: 19 DLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGIT 76
DLETT PRR G R ++E V +E E F+TLI+P D + GIT
Sbjct: 166 DLETTGLSPRR-GDR--IVEIAIARVDRYGNIEDE-FATLIRPDDRDTGPVF---VHGIT 218
Query: 77 REAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAF--AEIGKPAPVPVGMID 134
R+AV AP F EVAD + + L+G V HN A +EAF AE + M
Sbjct: 219 RDAVARAPRFAEVADDVLARLDGAVVVAHN------ASFEEAFLHAEFTAAGYQGLAMP- 271
Query: 135 SLGVLTEKFGRR---AGNMKMATLASYFGLG-QQKHRSLDDVR 173
+ T G+R A N + TLA G+ KH +L DVR
Sbjct: 272 --ALCTLWLGQRTFHAANFTLGTLAQQAGIPLVDKHTALGDVR 312
>gi|375146288|ref|YP_005008729.1| DNA polymerase III subunit epsilon [Niastella koreensis GR20-10]
gi|361060334|gb|AEV99325.1| DNA polymerase III, epsilon subunit [Niastella koreensis GR20-10]
Length = 455
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 15/148 (10%)
Query: 50 LESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ F TL++P + + GI+ + V AP FEEVA +IF +L G+++ HN+
Sbjct: 33 INRFETLVRP--VRTIPYYIQVLTGISNDMVAEAPTFEEVAPQIFELLTGKIFVAHNV-N 89
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGV--LTEKFGRRAGNMKMATLASYFGLG-QQKH 166
FD + +K F+ G ++ L LT+K + + L ++FG+ +H
Sbjct: 90 FDYSFLKHHFSAAGYEL-----NLNKLCTVRLTKKVFPGLPSYSLGNLCNHFGIAVYNRH 144
Query: 167 RSLDDVRMNLEVLKHCATVLFLESSLPN 194
R+ D + +L+H L L ++ P+
Sbjct: 145 RAGGDTDATVRLLEH----LLLHNAEPH 168
>gi|117619304|ref|YP_856106.1| DNA polymerase III subunit epsilon [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117560711|gb|ABK37659.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 244
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 93/219 (42%), Gaps = 23/219 (10%)
Query: 16 VFFDLETTVPRRAGQRFW----VLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
+ D ETT AG + ++E G + V RKL F IKP L V ++ +
Sbjct: 10 IILDTETTGMNTAGGPVYLGHRIIEIGCVEVINRKLTG-NHFHVYIKPDRL--VDPEAIQ 66
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG---KPAPV 128
GIT E + P F ++AD+ + G HN FD + + F ++G K A +
Sbjct: 67 VHGITDEFLRDKPSFSQIADEFIEFIRGAELIAHNA-PFDVSFMDYEFGKLGLNFKTADI 125
Query: 129 PVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFL 188
G+ D+L + + F + N+ + L +G+ HR+L ++ E+L A V L
Sbjct: 126 -CGITDTLAMARDLFPGKRNNLDV--LCDRYGI-DNSHRTLHGALLDAEIL---ADVYLL 178
Query: 189 ESSLPNTFNSNLQSSLTVTTRSRSNGKLPCREETSRKSP 227
+ N +SS + SN R S + P
Sbjct: 179 MTGGQTKLNLATESS-----ENESNQDTSIRRLESNRPP 212
>gi|423396064|ref|ZP_17373265.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG2X1-1]
gi|423406944|ref|ZP_17384093.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG2X1-3]
gi|401652547|gb|EJS70102.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG2X1-1]
gi|401659519|gb|EJS77003.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG2X1-3]
Length = 315
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 9/171 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ C +LV+ F + + P+ + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYCNHELVD--QFVSYVNPE--RPIPSRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCAT 184
D++ L +K+ + A N K+ TL G+ H + DD V + CA+
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAS 170
>gi|421187339|ref|ZP_15644699.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB419]
gi|399969138|gb|EJO03561.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB419]
Length = 489
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD--GIT 76
DLETT P + G +++ G V K++ +F T++ P V + D GI
Sbjct: 11 DLETTAPFKEGGH--IIQIGISFVKNWKIIN--NFQTMVNP----GVKIPEQIVDLTGIK 62
Query: 77 REAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSL 136
E VE+AP FE++A I L+G V+ HN+ R+D + FA I K + + +D++
Sbjct: 63 NEDVENAPYFEDLARMIHDQLSGTVFVAHNV-RYDFPYLNGEFARI-KMRRLRLEYVDTV 120
Query: 137 GVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDD-----VRMNLEVLKHCATVLFLESS 191
+ F + K+ L S G+ +H D ++ L++ +H F +++
Sbjct: 121 QLAQIVFP-TMNSYKLDELVSKLGINLPRHHRADQDASATAQLFLKIHEHLQE--FPQNT 177
Query: 192 LPNTFN 197
L N N
Sbjct: 178 LNNLIN 183
>gi|116491119|ref|YP_810663.1| Rad3-related DNA helicase [Oenococcus oeni PSU-1]
gi|118586913|ref|ZP_01544346.1| DNA helicase, Rad3-related family [Oenococcus oeni ATCC BAA-1163]
gi|290890627|ref|ZP_06553698.1| hypothetical protein AWRIB429_1088 [Oenococcus oeni AWRIB429]
gi|419757642|ref|ZP_14283973.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB304]
gi|419857631|ref|ZP_14380336.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB202]
gi|419858351|ref|ZP_14381024.1| Rad3-related DNA helicase [Oenococcus oeni DSM 20252 = AWRIB129]
gi|421184985|ref|ZP_15642399.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB318]
gi|421187217|ref|ZP_15644593.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB418]
gi|421189780|ref|ZP_15647094.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB422]
gi|421190763|ref|ZP_15648047.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB548]
gi|421193717|ref|ZP_15650963.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB553]
gi|421194810|ref|ZP_15652026.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB568]
gi|421196012|ref|ZP_15653204.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB576]
gi|116091844|gb|ABJ56998.1| 3'-5' exonuclease domain and Rad3-related DNA helicase [Oenococcus
oeni PSU-1]
gi|118432640|gb|EAV39373.1| DNA helicase, Rad3-related family [Oenococcus oeni ATCC BAA-1163]
gi|290479755|gb|EFD88408.1| hypothetical protein AWRIB429_1088 [Oenococcus oeni AWRIB429]
gi|399905600|gb|EJN93037.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB304]
gi|399964044|gb|EJN98699.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB418]
gi|399965432|gb|EJO00005.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB318]
gi|399971876|gb|EJO06115.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB553]
gi|399972870|gb|EJO07069.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB422]
gi|399973459|gb|EJO07624.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB548]
gi|399977203|gb|EJO11194.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB568]
gi|399978166|gb|EJO12127.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB576]
gi|410497615|gb|EKP89086.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB202]
gi|410498787|gb|EKP90232.1| Rad3-related DNA helicase [Oenococcus oeni DSM 20252 = AWRIB129]
Length = 489
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD--GIT 76
DLETT P + G +++ G V K++ +F T++ P V + D GI
Sbjct: 11 DLETTAPFKEGGH--IIQIGISFVKNWKIIN--NFQTMVNP----GVKIPEQIVDLTGIK 62
Query: 77 REAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSL 136
E VE+AP FE++A I L+G V+ HN+ R+D + FA I K + + +D++
Sbjct: 63 NEDVENAPYFEDLARMIHDQLSGTVFVAHNV-RYDFPYLNGEFARI-KMRRLRLEYVDTV 120
Query: 137 GVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDD-----VRMNLEVLKHCATVLFLESS 191
+ F + K+ L S G+ +H D ++ L++ +H F +++
Sbjct: 121 QLAQIVFP-TMNSYKLDELVSKLGINLPRHHRADQDASATAQLFLKIHEHLQE--FPQNT 177
Query: 192 LPNTFN 197
L N N
Sbjct: 178 LNNLIN 183
>gi|453050673|gb|EME98204.1| DNA polymerase III subunit epsilon [Streptomyces mobaraensis NBRC
13819 = DSM 40847]
Length = 333
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 10/132 (7%)
Query: 51 ESFSTLIKPK-DLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+++ T++ P+ D V + G+T E + AP FE+VA++ L+GRV HN
Sbjct: 54 DTWYTMVNPRRDPGPVWIH-----GLTSEVLADAPLFEDVAEEFARRLDGRVLVAHNA-A 107
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQ-QKHRS 168
FD + I +A APV + L+++ N K+ +LA+++G+ Q Q H +
Sbjct: 108 FDWSMIAREYARARAEAPVRQRLCTI--ALSKELRLPLPNHKLESLAAHYGVVQRQAHHA 165
Query: 169 LDDVRMNLEVLK 180
LDD R+ E +
Sbjct: 166 LDDARVLAEAFR 177
>gi|339010903|ref|ZP_08643472.1| putative ATP-dependent helicase DinG [Brevibacillus laterosporus
LMG 15441]
gi|338772237|gb|EGP31771.1| putative ATP-dependent helicase DinG [Brevibacillus laterosporus
LMG 15441]
Length = 962
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 12/159 (7%)
Query: 14 EIVFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
+ + D ETT PRR +++ GA++V +++E S+ST +KP + ++
Sbjct: 3 QFIVVDFETTGNQPRRGDS---IIQIGAVVVENGQIIE--SYSTFVKPD--KPIPPFITQ 55
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GIT E V AP EEV + +L+GR + HN FD ++EA G P
Sbjct: 56 LTGITDEMVSDAPSIEEVLPDLLRLLDGRTFVAHNA-AFDLNFLQEALLSQGY-YPFDGP 113
Query: 132 MIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLD 170
++D++ + ++G ++ LAS F + + D
Sbjct: 114 ILDTVELARVLLPMQSG-YRLVELASDFDIQHENPHQAD 151
>gi|94501331|ref|ZP_01307852.1| hypothetical protein RED65_02924 [Bermanella marisrubri]
gi|94426602|gb|EAT11589.1| hypothetical protein RED65_02924 [Oceanobacter sp. RED65]
Length = 738
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 19/170 (11%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V D+ETT R+ R V E G + V ++V+ + +LI P + + +R GI
Sbjct: 574 VIVDVETTGGRKEQHR--VTEVGMVKVLNGEIVD--EWQSLINP--MRHIPQSITRLTGI 627
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVP----VG 131
+ E V +AP F++VAD+I G V+ HN+ FD + F +G+ P V
Sbjct: 628 SNEMVSNAPVFDDVADEIAEFCAGSVFVAHNV-NFDYGFFRSEFERLGRRFHAPKLCTVQ 686
Query: 132 MIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLK 180
M + K+ + + L + + + HR+LDD + V +
Sbjct: 687 M-------SRKYLPGHSSYSLGKLCAALDIDLENHHRALDDAKAAAHVFR 729
>gi|187251744|ref|YP_001876226.1| DNA polymerase III subunit epsilon [Elusimicrobium minutum Pei191]
gi|186971904|gb|ACC98889.1| DNA polymerase III, epsilon subunit [Elusimicrobium minutum Pei191]
Length = 201
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 75/170 (44%), Gaps = 18/170 (10%)
Query: 17 FFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
F D ETT + G R + ++ L+ + T+I P+ ++ + GI
Sbjct: 15 FLDTETTGLSPYDGARLCEIA----VITNGALIAKSEYGTIINPR--CVISQEVINIHGI 68
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
T E AP FE++A + +L V HN FD + FA G P V ++D+
Sbjct: 69 TNEMAAQAPYFEDIAPLLIGLLTDSVIVCHN-ADFDIPFLAAEFARCGLRMPQTV-ILDT 126
Query: 136 LGVLTEKFGRRAGNMK---MATLASYFGLGQQK-HRSLDDVRMNLEVLKH 181
L KF R+ GN K + + S GL + HR++ D +M +V H
Sbjct: 127 L-----KFARKNGNFKKNNLGFIVSELGLSNEGWHRAMADAKMTEKVFYH 171
>gi|269796817|ref|YP_003316272.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease
[Sanguibacter keddieii DSM 10542]
gi|269099002|gb|ACZ23438.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Sanguibacter keddieii DSM 10542]
Length = 611
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 72/132 (54%), Gaps = 10/132 (7%)
Query: 52 SFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFD 111
S+S+L+ P V G+TRE + AP++++VA + ++ RV HN RFD
Sbjct: 56 SWSSLLDP----GVDPGPVHVHGLTRERLAGAPQYQDVAGTLDELVRDRVLVAHNA-RFD 110
Query: 112 CARIKEAFAEIGKP-APVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRSL 169
+ AE + AP+ V L+ + ++++AT+A+++G+ Q++ H +
Sbjct: 111 WGFLA---AESDRARAPLSVDRRLCTLALSRRLDLPVSDLRLATVAAHWGVQQRRAHDAE 167
Query: 170 DDVRMNLEVLKH 181
DDVR+ +EVL+H
Sbjct: 168 DDVRVLVEVLRH 179
>gi|336319633|ref|YP_004599601.1| DNA polymerase III, epsilon subunit [[Cellvibrio] gilvus ATCC
13127]
gi|336103214|gb|AEI11033.1| DNA polymerase III, epsilon subunit [[Cellvibrio] gilvus ATCC
13127]
Length = 633
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 11/149 (7%)
Query: 34 VLEFGAIIVCPRKLVELESFSTLIKPK-DLSAVALKSSRCDGITREAVESAPEFEEVADK 92
VL A + R VE +SF +L+ P D V + G+TRE + +P+F EV+ +
Sbjct: 46 VLSVAAAALDERGNVE-DSFESLLDPGCDPGPVHIH-----GLTRERLAGSPQFAEVSSR 99
Query: 93 IFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKM 152
+ IL+GRV HN FD ++ G PV + L+ + G N ++
Sbjct: 100 LNRILSGRVLVAHNA-AFDHGFLQAESIRAGLDDPVTHRLCTV--ALSRRIGVPVPNHRL 156
Query: 153 ATLASYFGLGQ-QKHRSLDDVRMNLEVLK 180
TLASY+ + + Q H + DDVR+ ++V +
Sbjct: 157 DTLASYWRIPRGQAHVAADDVRVLVDVFR 185
>gi|410479996|ref|YP_006767633.1| DNA polymerase III subunit epsilon [Leptospirillum ferriphilum
ML-04]
gi|406775248|gb|AFS54673.1| DNA polymerase III, epsilon subunit [Leptospirillum ferriphilum
ML-04]
Length = 265
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 90/190 (47%), Gaps = 19/190 (10%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
++ F D+ETT R R ++E G KL L STLIK D+ V S+ +
Sbjct: 2 KVTFLDVETTGLLRD-SRARIIELGFSSWENGKL--LRKTSTLIKGADI--VPDNISKIN 56
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM- 132
GIT E ++ AP FEEV I + G + HN+ FD + E+ +P+G
Sbjct: 57 GITTEMLKDAPRFEEVWKSIKGDIQGSLLVAHNL-AFDVGMVNR---ELILADRIPLGNM 112
Query: 133 -IDSLGVLTEKFGRRAGNMKMATLASYFG-LGQQKHRSLDDVRMNLEVLKHCATVLFLES 190
ID+L L+ K + ++ +A + G L + HR++ D LE L+ + L
Sbjct: 113 GIDTLP-LSRKMLPELSSYRLGEIAKHMGILNENPHRAMGD----LETLEKIVSNLL--G 165
Query: 191 SLPNTFNSNL 200
SLP TF+ +
Sbjct: 166 SLPGTFDEGV 175
>gi|424866610|ref|ZP_18290442.1| DNA polymerase III, epsilon subunit [Leptospirillum sp. Group II
'C75']
gi|124516571|gb|EAY58079.1| DNA polymerase III, epsilon subunit [Leptospirillum rubarum]
gi|387222699|gb|EIJ77118.1| DNA polymerase III, epsilon subunit [Leptospirillum sp. Group II
'C75']
Length = 265
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 90/190 (47%), Gaps = 19/190 (10%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
++ F D+ETT R R ++E G KL L STLIK D+ V S+ +
Sbjct: 2 KVTFLDVETTGLLRD-SRARIIELGFSSWENGKL--LRKTSTLIKGADI--VPDNISKIN 56
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM- 132
GIT E ++ AP FEEV I + G + HN+ FD + E+ +P+G
Sbjct: 57 GITTEMLKDAPRFEEVWKSIKGDIQGSLLVAHNL-AFDVGMVNR---ELILADRIPLGNM 112
Query: 133 -IDSLGVLTEKFGRRAGNMKMATLASYFG-LGQQKHRSLDDVRMNLEVLKHCATVLFLES 190
ID+L L+ K + ++ +A + G L + HR++ D LE L+ + L
Sbjct: 113 GIDTLP-LSRKMLPELSSYRLGEIAKHMGILNENPHRAMGD----LETLEKIVSNLL--G 165
Query: 191 SLPNTFNSNL 200
SLP TF+ +
Sbjct: 166 SLPGTFDEGV 175
>gi|308049181|ref|YP_003912747.1| DNA polymerase III subunit epsilon [Ferrimonas balearica DSM 9799]
gi|307631371|gb|ADN75673.1| DNA polymerase III, epsilon subunit [Ferrimonas balearica DSM 9799]
Length = 240
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 14/181 (7%)
Query: 7 SQAAGTAEIVFFDLETT-VPRRAGQRFW---VLEFGAIIVCPRKLVELESFSTLIKPKDL 62
+QAA +IVF D ETT + + AG + ++E G + + RK ++ I+P
Sbjct: 2 TQAADLRQIVF-DTETTGMNQGAGPHYLGHKLIEIGCVELINRKPTG-RTYHVYIQPD-- 57
Query: 63 SAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEI 122
V ++ + GIT E + P F E+A++ F + G HN FD I F +
Sbjct: 58 RPVDEEAIQVHGITDEFLVGKPRFGEIAEEFFEFIRGAELIAHNA-NFDIGFIDYEFEML 116
Query: 123 GKPAPVP--VGMIDSLGVLTEK--FGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEV 178
G+ + ++D+L + EK G GN+ + L ++G+ HR+L ++ E+
Sbjct: 117 GRFGKLEDHCSLVDTLQLAREKKNRGEIQGNLNLDALCRFYGI-DNSHRTLHGALLDAEI 175
Query: 179 L 179
L
Sbjct: 176 L 176
>gi|425734098|ref|ZP_18852418.1| hypothetical protein C272_03140 [Brevibacterium casei S18]
gi|425482538|gb|EKU49695.1| hypothetical protein C272_03140 [Brevibacterium casei S18]
Length = 584
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 75/167 (44%), Gaps = 9/167 (5%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
V DLETT + E GA+ + R + F +L+KP+ S ++ SR G
Sbjct: 34 FVVVDLETTGTHSGTSE--ITEIGAVKL--RGGEVIGEFQSLVKPEH-SVISPFVSRLTG 88
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
IT V+ AP V G V HN FD ++ A + P P ++D
Sbjct: 89 ITHAMVDDAPSIRSVLPSFLEFAVGAVLVAHNA-PFDIGFLRSACERLDYHWPQPQ-VLD 146
Query: 135 SLGVLTEKFGR-RAGNMKMATLASYFG-LGQQKHRSLDDVRMNLEVL 179
++ + GR N K+ TLA++FG + + HR+L D R EVL
Sbjct: 147 TVTLSRRVLGRDEVRNHKLGTLAAHFGTVVEPDHRALSDARATGEVL 193
>gi|415885283|ref|ZP_11547211.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus methanolicus MGA3]
gi|387590952|gb|EIJ83271.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus methanolicus MGA3]
Length = 936
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 10/107 (9%)
Query: 19 DLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGIT 76
DLETT P+R G R +++F A+++ K++E +S+ + P+ ++ GI
Sbjct: 10 DLETTGNAPKR-GDR--IIQFAAVVIENGKIIE--QYSSFVNPE--QEISPFIEELTGIN 62
Query: 77 REAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
E V++AP F E+A KI S+L+G + HN+ FD + ++E G
Sbjct: 63 DEMVKNAPFFSEIAPKILSLLDGAYFVAHNV-LFDLSFLQEELIHAG 108
>gi|420154543|ref|ZP_14661438.1| exonuclease [Actinomyces massiliensis F0489]
gi|394753241|gb|EJF36815.1| exonuclease [Actinomyces massiliensis F0489]
Length = 561
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 80/175 (45%), Gaps = 16/175 (9%)
Query: 14 EIVFF--DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
E+ F DLETT A + E GA+ V R V FSTL+ P +A+ + +
Sbjct: 14 EVTFIAVDLETT--GGAPGAHAITEIGAVRV--RGGVIDGEFSTLVNPG--AAIPAQITV 67
Query: 72 CDGITREAVESAPEFEEVADKIFSILN----GRVWAGHNIRRFDCARIKEAFAEIGKPAP 127
GIT V AP E F + G + HN R FD ++ A E+ P
Sbjct: 68 LTGITNAMVVDAPPVGEALTSFFEWAHWSGPGTILVAHNAR-FDIGHLRSAAQELTLPWQ 126
Query: 128 VPVGMIDSLGVLTEKFGR-RAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLK 180
P ++D+L + + R N ++ TLAS+ G + HR+LDD R ++VL
Sbjct: 127 EP-RVVDTLALARRAWSRSEVPNHRLGTLASFVGSPTRPTHRALDDARATVDVLH 180
>gi|194291379|ref|YP_002007286.1| DNA polymerase iii, epsilon subunit + giy-yig endonuclease (modular
protein) [Cupriavidus taiwanensis LMG 19424]
gi|193225283|emb|CAQ71225.1| DNA polymerase III, epsilon subunit + GIY-YIG endonuclease (modular
protein) [Cupriavidus taiwanensis LMG 19424]
Length = 532
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 89/202 (44%), Gaps = 32/202 (15%)
Query: 9 AAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALK 68
AA + IVF DLETT QR + E G + V P +VE E TL+ P ++
Sbjct: 27 AALSRPIVFVDLETTGA--DAQRDRITEIGVVEVGPDGIVEWE---TLLDPG--MSIPPF 79
Query: 69 SSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG----K 124
R GI+ + V P FE +A+ + L GR++ HN RFD +K AF G
Sbjct: 80 IQRMTGISDDMVRGQPTFESLAESLAERLQGRLFVAHNA-RFDYGFLKNAFRRAGVTFRA 138
Query: 125 PAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQ-KHRSLDDVRM--------- 174
V + SL E+ G + L + FGL + +HR+L D +
Sbjct: 139 DVLCTVRLSRSLFPSVERHG-------LDALIARFGLTPKGRHRALADAELLWQFWQKIH 191
Query: 175 ---NLEVLKHCATVLFLESSLP 193
++E+++ L +SLP
Sbjct: 192 ATYSVELVEAAVRTLVRRASLP 213
>gi|375011077|ref|YP_004988065.1| exonuclease, DNA polymerase III, epsilon subunit family
[Owenweeksia hongkongensis DSM 17368]
gi|359347001|gb|AEV31420.1| exonuclease, DNA polymerase III, epsilon subunit family
[Owenweeksia hongkongensis DSM 17368]
Length = 441
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+ETT +G + E ++ K+V+ ++S L+ PK + L GIT +
Sbjct: 6 DVETTGGHASGHA--MTEIAIVLYDGTKVVD--NYSQLLNPK--QHIPLNIQTLTGITPD 59
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
VE AP F +VAD++ L ++ HN+ FD + +K AFA +G
Sbjct: 60 MVEDAPTFPDVADEVREFLGDHIFVAHNV-NFDYSFVKSAFASVG 103
>gi|392987464|ref|YP_006486057.1| DNA polymerase III subunit epsilon [Enterococcus hirae ATCC 9790]
gi|392334884|gb|AFM69166.1| DNA polymerase III, epsilon subunit [Enterococcus hirae ATCC 9790]
Length = 322
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 79/180 (43%), Gaps = 20/180 (11%)
Query: 7 SQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVA 66
S A+ ++ V D+ETT G+ V++ A+ V K+ ++F + + D S +
Sbjct: 52 SLASLPSDYVLIDIETT---GFGREDKVIQIAAVKVINDKI--FDTFDSYVSIGD-STLP 105
Query: 67 LKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPA 126
+ + I + + +AP F EV+DK+ + GHN++ FD + A
Sbjct: 106 TQITYLTNINEKILANAPTFTEVSDKLLDFIEDFPIVGHNVKTFDLPFL----------A 155
Query: 127 PVPVGMIDSLGVLTEKFGR----RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
+ + D L V T R N ++ TL ++ + Q H +L+DV E+ +
Sbjct: 156 RNGLDLKDRLAVDTVNLARTTPLNVKNYRLETLTDFYKIETQAHNALNDVLATYEIYNNL 215
>gi|383753932|ref|YP_005432835.1| hypothetical protein SELR_11040 [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381365984|dbj|BAL82812.1| hypothetical protein SELR_11040 [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 325
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 72/165 (43%), Gaps = 29/165 (17%)
Query: 45 RKLVELESFSTLIKPKDLSAVALKSSRCD-------------------GITREAVESAPE 85
R +E++ FS+L++P + + D GIT E + AP+
Sbjct: 48 RNNIEVDFFSSLVQPPPFHVAKSEQDKLDNANYHGLVAYVNCFISCFTGITSEMLSGAPK 107
Query: 86 FEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGR 145
FE++AD +++ L+ + GHNI FD + + + + + +D++ + R
Sbjct: 108 FEDIADALWNFLHNEILVGHNI-HFDLNFLYDNLFDHNQSYILNNDFVDTM-----RIAR 161
Query: 146 RA----GNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVL 186
A + ++ L YF + Q HR+ D + VL+ A ++
Sbjct: 162 LALPDLEHHRLIDLDDYFDIQSQHHRAESDCQTTTIVLQELAKLV 206
>gi|257876649|ref|ZP_05656302.1| DNA polymerase III [Enterococcus casseliflavus EC20]
gi|257810815|gb|EEV39635.1| DNA polymerase III [Enterococcus casseliflavus EC20]
Length = 918
Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 17/180 (9%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +++FG ++V K++ F+ I P ++ + R IT +
Sbjct: 9 DLETTGTDSTIDR--IIQFGCVLVQDGKIIN--RFAADINPD--RRISKQIQRLTHITNQ 62
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V AP FE++AD I+++L+ ++ HNI FD + F G P P+ + ID++
Sbjct: 63 QVSKAPYFEDIADTIYNLLSNTIFVAHNI-YFDYHFLSNEFVRCGLP-PLSIPGIDTVE- 119
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLES---SLPNT 195
L++ F + ++ LA G +H + + EV A L++E+ LP T
Sbjct: 120 LSQVFLPTESSFRLGDLADSIGF---RHDNPHQADSDAEVT--AALFLYIEAIMRQLPRT 174
>gi|319651314|ref|ZP_08005444.1| DnaQ family exonuclease/DinG family helicase [Bacillus sp.
2_A_57_CT2]
gi|317397094|gb|EFV77802.1| DnaQ family exonuclease/DinG family helicase [Bacillus sp.
2_A_57_CT2]
Length = 933
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 61/110 (55%), Gaps = 10/110 (9%)
Query: 16 VFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
V DLETT P++ + +++F A+++ K+ E +S+L+ P+ ++
Sbjct: 6 VVVDLETTGNAPKKGDK---IIQFAAVVIENGKITE--EYSSLVNPE--QSIPPFIEELT 58
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
G++ E VE+AP F E+A K+ ++L G + HN+ FD + ++E E G
Sbjct: 59 GLSDEMVENAPLFSEIAPKVLTLLEGAYFVAHNV-LFDLSFLQEELIEAG 107
>gi|443491506|ref|YP_007369653.1| DNA polymerase III subunit [Mycobacterium liflandii 128FXT]
gi|442584003|gb|AGC63146.1| DNA polymerase III subunit [Mycobacterium liflandii 128FXT]
Length = 674
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 78/177 (44%), Gaps = 26/177 (14%)
Query: 16 VFFDLETTVPRRAGQRF----WVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
V DLETT R G + E GA+ V R V L F+TL+ P+ ++ + R
Sbjct: 58 VVVDLETTGGRATGTEASPPDAITEIGAVKV--RGGVILGEFATLVDPQ--RSIPPQIVR 113
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFA--EIGKPAPVP 129
GIT + AP + V F + V HN FD ++ A +I +P
Sbjct: 114 LTGITTAMLCDAPTIDSVLPMFFEFVGNSVLVAHNAG-FDIGFLRAAAGRCDIARPG--- 169
Query: 130 VGMIDSLGVLTEKFGRR------AGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVL 179
S V T + RR A ++++A LA F + Q HR+LDD R +EVL
Sbjct: 170 -----SKVVCTVRLARRVLSREEAPSVRLAALARLFSVATQPTHRALDDARATVEVL 221
>gi|419705009|ref|ZP_14232551.1| DNA polymerase III PolC [Mycoplasma canis UFG1]
gi|384395870|gb|EIE42297.1| DNA polymerase III PolC [Mycoplasma canis UFG1]
Length = 1441
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 46/132 (34%), Positives = 68/132 (51%), Gaps = 12/132 (9%)
Query: 7 SQAAGTAEIVFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKD-LSA 64
+Q A V FDLETT + + G ++EFGA I+ ++V+ F IKP++ LS
Sbjct: 402 NQKISEASYVVFDLETTSLSPKIGD---IIEFGASIIENGQIVDSVQF--FIKPREKLSD 456
Query: 65 VALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGK 124
+ ++ IT E V++ E EE D+IF IL+ +V HN FD + + F + K
Sbjct: 457 FTINLTK---ITNEMVKNGIEIEEALDRIFKILDNKVAVAHNA-NFDMHFLLQKFKDHNK 512
Query: 125 PAPVPVGMIDSL 136
P IDSL
Sbjct: 513 KIP-NTTFIDSL 523
>gi|418474225|ref|ZP_13043738.1| DNA polymerase III subunit epsilon [Streptomyces coelicoflavus
ZG0656]
gi|371545182|gb|EHN73829.1| DNA polymerase III subunit epsilon [Streptomyces coelicoflavus
ZG0656]
Length = 330
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 10/132 (7%)
Query: 51 ESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ + TL+ P +D V + G+T + + AP F +VA++ + L+GRV HN
Sbjct: 55 DHWYTLVNPQRDPGPVWIH-----GLTNDVLRDAPLFPDVAEEFAARLDGRVLVAHNA-V 108
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRS 168
FD I +A + APV + L++ N K+ +LA++FG+ QQ+ H +
Sbjct: 109 FDWQMIAREYARAEREAPVRQRLCTI--ALSKALDLPLPNHKLESLAAHFGVVQQRAHHA 166
Query: 169 LDDVRMNLEVLK 180
LDD R+ E +
Sbjct: 167 LDDARVLAEAFR 178
>gi|377575333|ref|ZP_09804327.1| DNA polymerase III epsilon subunit [Mobilicoccus pelagius NBRC
104925]
gi|377535910|dbj|GAB49492.1| DNA polymerase III epsilon subunit [Mobilicoccus pelagius NBRC
104925]
Length = 675
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 79/180 (43%), Gaps = 14/180 (7%)
Query: 6 PSQAAGT--AEIVFF--DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKD 61
P + GT +E+ F DLETT A + E GA+ V ++VE F TL+ P+
Sbjct: 86 PPEVLGTPLSEVTFVVVDLETTGGSPADSS--ITEIGAVKVNGGEVVE--EFHTLVDPQ- 140
Query: 62 LSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAE 121
V GIT E +E AP +EV G V HN FD ++ A
Sbjct: 141 -VPVPPFIRLLTGITDEMLEGAPHIDEVLPSFLEFSRGAVLVAHNA-PFDIGFLRAATRA 198
Query: 122 IGKPAPVPVGMIDSLGVLTEKFGR-RAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
G P P ++D++ + R N K+ TLA FG HR+L D R ++VL
Sbjct: 199 CGLSWPAPA-VVDTVTLARRLVTRDEVPNHKLGTLAELFGTAVAPDHRALHDARATVDVL 257
>gi|365924679|ref|ZP_09447442.1| ATP-dependent helicase DinG [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|420264843|ref|ZP_14767446.1| DinG family ATP-dependent helicase [Lactobacillus mali KCTC 3596 =
DSM 20444]
gi|394429691|gb|EJF02103.1| DinG family ATP-dependent helicase [Lactobacillus mali KCTC 3596 =
DSM 20444]
Length = 933
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 6/107 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+ETT G +L+F + + +++V +F+T+I P + ++ + GI+ +
Sbjct: 11 DIETTGTSMDGSN-RMLQFSCVFIKNKEIVN--TFNTMINPG--MPIPIEVQKLTGISDK 65
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKP 125
V AP FE++A I+S+L G V+ HNI FD + E F G P
Sbjct: 66 NVRKAPFFEDMAGTIYSLLQGTVFIAHNI-NFDYRFLNEEFLRCGYP 111
>gi|296140382|ref|YP_003647625.1| DNA polymerase III subunit epsilon [Tsukamurella paurometabola DSM
20162]
gi|296028516|gb|ADG79286.1| DNA polymerase III, epsilon subunit [Tsukamurella paurometabola DSM
20162]
Length = 610
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 72/172 (41%), Gaps = 19/172 (11%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
V DLETT G + E GA+ V R L F+TL+ P+ +A + G
Sbjct: 22 FVVVDLETTGGSPKGGDA-ITEIGAVKV--RGGEVLGEFATLVDPE--RGIAPHITHLTG 76
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
IT V AP V G V HN RFD +K A A G P P P +
Sbjct: 77 ITTAMVTGAPTIASVLPAFLEFAQGAVLVAHNA-RFDIGFLKAAAAATGTPWPKPQTLC- 134
Query: 135 SLGVLTEKFGRR------AGNMKMATLASYF-GLGQQKHRSLDDVRMNLEVL 179
T + RR A ++K++ +A F HR+LDD R ++VL
Sbjct: 135 -----TVQLARRVLTRDEAPSVKLSEMARLFRAETTPTHRALDDARATVDVL 181
>gi|421872967|ref|ZP_16304583.1| dnaQ exonuclease/DinG family helicase [Brevibacillus laterosporus
GI-9]
gi|372457913|emb|CCF14132.1| dnaQ exonuclease/DinG family helicase [Brevibacillus laterosporus
GI-9]
Length = 962
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 12/159 (7%)
Query: 14 EIVFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
+ + D ETT PRR +++ GA++V +++E S+ST +KP + ++
Sbjct: 3 QFIVVDFETTGNQPRRGDS---IIQIGAVVVENGQIIE--SYSTFVKPD--KPIPPFITQ 55
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GIT E V AP EEV + +L+GR + HN FD ++EA G P
Sbjct: 56 LTGITDEMVSDAPSIEEVLPDLLRLLDGRTFVAHNA-GFDLNFLQEALLSQGY-YPFDGP 113
Query: 132 MIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLD 170
++D++ + ++G ++ LAS F + + D
Sbjct: 114 ILDTVELARVLLPMQSG-YRLVELASDFDIQHENPHQAD 151
>gi|411009925|ref|ZP_11386254.1| DNA polymerase III subunit epsilon [Aeromonas aquariorum AAK1]
gi|423196036|ref|ZP_17182619.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila SSU]
gi|404632837|gb|EKB29439.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila SSU]
Length = 244
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 15/171 (8%)
Query: 16 VFFDLETTVPRRAGQRFW----VLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
+ D ETT AG + ++E G + V RKL F IKP L V ++ +
Sbjct: 10 IILDTETTGMNTAGGPVYLGHRIIEIGCVEVINRKLTG-NHFHVYIKPDRL--VDPEAIQ 66
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG---KPAPV 128
GIT E + P F ++AD+ + G HN FD + + F+++G K A +
Sbjct: 67 VHGITDEFLRDKPSFSQIADEFIEFIRGAELIAHNA-PFDVSFMDYEFSKLGLNFKTADI 125
Query: 129 PVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
G+ D+L + + F + N+ + L +G+ HR+L ++ E+L
Sbjct: 126 -CGITDTLAMARDLFPGKRNNLDV--LCDRYGI-DNSHRTLHGALLDAEIL 172
>gi|291529581|emb|CBK95167.1| DNA polymerase III, alpha subunit (gram-positive type) [Eubacterium
rectale M104/1]
Length = 345
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 86/194 (44%), Gaps = 20/194 (10%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAI--IVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
+IV +DLETT + R +L F AI V + E++ + + P + + +
Sbjct: 16 KIVVYDLETTGFKSKNTR--ILSFSAIRYQVSEHGMDEIDRRNMFLNP--MMTIPAYITA 71
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVW-AGHNIRRFDCARIKEAFAEIGKPAPVPV 130
+ IT E V P E +I S LN + +G+N FD + E IG +P
Sbjct: 72 VNHITNEKVADCPTEYEAGAEILSYLNSADFVSGYNNANFDDGLVNEMARRIGFGKWIPK 131
Query: 131 GMIDSL----GVLTEKFGRRAGNMKMATLASYF--GLGQQKHRSLDDV----RMNLEVLK 180
ID + VLT++ N K+ TLA YF G + H S+DDV R+ ++
Sbjct: 132 NEIDVMILAKAVLTKQ---DVPNFKLGTLAEYFHADAGLEFHNSIDDVIATSRVLWGLVN 188
Query: 181 HCATVLFLESSLPN 194
C T E S+ N
Sbjct: 189 KCRTDEHDEGSVVN 202
>gi|381164959|ref|ZP_09874189.1| exonuclease, DNA polymerase III, epsilon subunit family
[Saccharomonospora azurea NA-128]
gi|379256864|gb|EHY90790.1| exonuclease, DNA polymerase III, epsilon subunit family
[Saccharomonospora azurea NA-128]
Length = 566
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 73/170 (42%), Gaps = 19/170 (11%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V DLETT G + E GA+ V R L F+TL+ P + + GI
Sbjct: 18 VIVDLETTGGAPDGGN--ITEIGAVKV--RGGEVLGEFATLVDPG--QPIPPQIVALTGI 71
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
T V SAP E V + G V HN FD + +K A G P PV +
Sbjct: 72 TTAMVRSAPRIEHVLPAFLAFAEGAVLVAHNA-GFDTSFLKAACRAHGYAWPTPVVLC-- 128
Query: 136 LGVLTEKFGRR-----AGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVL 179
T K RR + +++TLA+ FG HR+LDD R ++VL
Sbjct: 129 ----TLKLARRVLRGEVRSHRLSTLAALFGASTTPTHRALDDARATVDVL 174
>gi|289772455|ref|ZP_06531833.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
gi|289702654|gb|EFD70083.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
Length = 330
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 10/132 (7%)
Query: 51 ESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ + TL+ P +D V + G+T + + AP F +VA++ + L+GRV HN
Sbjct: 57 DHWYTLVNPQRDPGPVWIH-----GLTSDVLRDAPLFPDVAEEFAARLDGRVLVAHNA-V 110
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRS 168
FD I +A + APV + L++ N K+ +LA++FG+ QQ+ H +
Sbjct: 111 FDWQMIAREYARAEREAPVRQRLCTI--ALSKALDLPLPNHKLESLAAHFGVVQQRAHHA 168
Query: 169 LDDVRMNLEVLK 180
LDD R+ E +
Sbjct: 169 LDDARVLAEAFR 180
>gi|365853570|ref|ZP_09393837.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
parafarraginis F0439]
gi|363712195|gb|EHL95894.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
parafarraginis F0439]
Length = 943
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 78/152 (51%), Gaps = 8/152 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+ETT A +++F IV ++V ++ T + P+ V + + GIT +
Sbjct: 11 DIETTGTDMADNN-RIIQFSCAIVADNRVVN--TYVTDVNPQ--REVPKRIIQLTGITPQ 65
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
++ AP F++++ K++ +L+G V+ HN+ FD + + F +G P + + ID++
Sbjct: 66 RLKKAPTFDQISAKLYQLLSGTVFVAHNV-NFDFPFLNQEFQRVGYPE-LSIDAIDTV-T 122
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQKHRSLD 170
L++ + ++ L++YF + + + D
Sbjct: 123 LSQILLPTLASYRLQDLSAYFNIVHKHPHTAD 154
>gi|21220316|ref|NP_626095.1| DNA polymerase III subunit epsilon [Streptomyces coelicolor A3(2)]
gi|6117870|emb|CAB59443.1| putative DNA polymerase III, epsilon chain (EC 2.7.7.7)
[Streptomyces coelicolor A3(2)]
Length = 328
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 10/132 (7%)
Query: 51 ESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ + TL+ P +D V + G+T + + AP F +VA++ + L+GRV HN
Sbjct: 55 DHWYTLVNPQRDPGPVWIH-----GLTSDVLRDAPLFPDVAEEFAARLDGRVLVAHNA-V 108
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRS 168
FD I +A + APV + L++ N K+ +LA++FG+ QQ+ H +
Sbjct: 109 FDWQMIAREYARAEREAPVRQRLCTI--ALSKALDLPLPNHKLESLAAHFGVVQQRAHHA 166
Query: 169 LDDVRMNLEVLK 180
LDD R+ E +
Sbjct: 167 LDDARVLAEAFR 178
>gi|315638420|ref|ZP_07893597.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter
upsaliensis JV21]
gi|315481411|gb|EFU72038.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter
upsaliensis JV21]
Length = 260
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 18/171 (10%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+E+T +GQ +LE GA+ + K EL+ F + +K + + L + GI
Sbjct: 76 DIESTGGINSGQ---ILEIGAVKIQNHK--ELDRFESFVK---VDEIPLNITELTGIELN 127
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP V + LN V+ HN+ +FD I ++ E G G++ + +
Sbjct: 128 MVKDAPNLTRVLEAFRLFLNDSVFVAHNV-KFDYNFISKSLYECG------FGILLNRKI 180
Query: 139 LTEKFGR---RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVL 186
T F + + + K+ L + HR+L+D E+ K+C + L
Sbjct: 181 CTIDFAQCCIESSHYKLDALKEILKIESTHHRALNDALAAAEIFKYCLSKL 231
>gi|365828287|ref|ZP_09370111.1| hypothetical protein HMPREF0975_01894 [Actinomyces sp. oral taxon
849 str. F0330]
gi|365263782|gb|EHM93605.1| hypothetical protein HMPREF0975_01894 [Actinomyces sp. oral taxon
849 str. F0330]
Length = 346
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
A V DLETT R G R + E GA+ V R L FSTL+ P + + +
Sbjct: 37 ATFVVVDLETT-GRAPGARA-LTEIGAVKV--RGGRVLADFSTLVNPG--VTIPAQITML 90
Query: 73 DGITREAVESAPEFEEVADKIFSILN----GRVWAGHNIRRFDCARIKEAFAEIGKPAPV 128
GIT V AP + + + V HN R FD ++ A A +G P
Sbjct: 91 TGITNAMVAGAPGVRACMEAFLAWADLPADDVVLVAHNAR-FDVGHLRGAAAALGLEWPE 149
Query: 129 PVGMIDSLGVLTEKFGR-RAGNMKMATLASYFG-LGQQKHRSLDDVRMNLEVLKHCATVL 186
P ++D+L + + + R N K+ TLA++ G + HR+LDD ++VL V+
Sbjct: 150 PC-VLDTLALARKAWTRSEVPNHKLGTLAAFVGSRTRPTHRALDDAHATVDVLHAALEVM 208
>gi|257867744|ref|ZP_05647397.1| DNA polymerase III [Enterococcus casseliflavus EC30]
gi|257874072|ref|ZP_05653725.1| DNA polymerase III [Enterococcus casseliflavus EC10]
gi|257801827|gb|EEV30730.1| DNA polymerase III [Enterococcus casseliflavus EC30]
gi|257808236|gb|EEV37058.1| DNA polymerase III [Enterococcus casseliflavus EC10]
Length = 918
Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats.
Identities = 50/180 (27%), Positives = 85/180 (47%), Gaps = 17/180 (9%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +++FG ++V K++ F+ I P ++ + R IT +
Sbjct: 9 DLETTGTDSTIDR--IIQFGCVLVQDGKIIN--RFAADINPD--RRISKQIQRLTHITNQ 62
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V AP FE++AD I+++L+ ++ HNI FD + F G P P+ + ID++
Sbjct: 63 QVSKAPYFEDIADTIYNLLSNTIFVAHNI-YFDYHFLSNEFVRCGLP-PLSIPGIDTVE- 119
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLES---SLPNT 195
L + F + ++ LA G +H + + EV A L++E+ LP T
Sbjct: 120 LAQVFLPTESSFRLGDLADSIGF---RHDNPHQADSDAEVT--AALFLYIEAIMRQLPRT 174
>gi|421749854|ref|ZP_16187211.1| DNA polymerase iii, epsilon subunit + giy-yig endonuclease (modular
protein), partial [Cupriavidus necator HPC(L)]
gi|409771205|gb|EKN53581.1| DNA polymerase iii, epsilon subunit + giy-yig endonuclease (modular
protein), partial [Cupriavidus necator HPC(L)]
Length = 686
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
IVF DLETT QR + E G + V P + E + TL+ P A+ R G
Sbjct: 39 IVFVDLETTG--TDAQRDRITEIGVVEVGPDGVTE---WDTLLDPG--CAIPPFIQRMTG 91
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
IT E V P FE +A+ + L G+++ HN RFD +K++F G
Sbjct: 92 ITEEMVRGQPTFEALAEALAERLQGKLFVAHNA-RFDYGFLKQSFTRAG 139
>gi|32035046|ref|ZP_00135112.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
exonucleases [Actinobacillus pleuropneumoniae serovar 1
str. 4074]
gi|126208748|ref|YP_001053973.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|126097540|gb|ABN74368.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
Length = 257
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 78/173 (45%), Gaps = 19/173 (10%)
Query: 16 VFFDLETTV-----PRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKP-KDLSAVALKS 69
V D ETT P + G ++E GA+ V R+L +F IKP +++ A+K
Sbjct: 10 VVLDTETTGMSFSGPPQIGHN--IIEIGAVEVINRRLTG-RTFHVYIKPPREVDEEAIK- 65
Query: 70 SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVP 129
GIT E ++ P F EVAD+ + G HN FD A + + F+ +G P P
Sbjct: 66 --VHGITNEFLQDKPVFAEVADEFIEFIKGAELIIHN-APFDVAFMDQEFSYLGNPPPKT 122
Query: 130 VGM---IDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
M DSL V + + + N+ L G+ K R L ++ E+L
Sbjct: 123 AEMCSVTDSLAVARKMYPGKRNNLD--ALCDRLGIDNSK-RVLHGALLDAEIL 172
>gi|388256939|ref|ZP_10134119.1| DNA polymerase III, epsilon subunit [Cellvibrio sp. BR]
gi|387939143|gb|EIK45694.1| DNA polymerase III, epsilon subunit [Cellvibrio sp. BR]
Length = 471
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+ETT R ++E G + V + + +STLI P+ + + R GIT E
Sbjct: 13 DIETTGGNVTYDR--IIEIGIVEVTEQGVTH---WSTLINPR--TTIPEGIQRLTGITNE 65
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKP 125
+AP FE+VA +I L G+++ HN+ RFD I+ FA + P
Sbjct: 66 MAAAAPYFEQVAKEIILRLQGKLFVAHNV-RFDYGFIRNEFARLAYP 111
>gi|333897122|ref|YP_004470996.1| DNA polymerase III subunit alpha [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333112387|gb|AEF17324.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 1410
Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats.
Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 11/174 (6%)
Query: 7 SQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVA 66
+ A V FD+ETT ++E GA+ + ++V+ +F T + P+ ++
Sbjct: 391 TSATIDGSFVVFDIETTGLSSINDN--IIEIGAVKIKNFQIVD--TFETFVNPQ--VHIS 444
Query: 67 LKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPA 126
++ GIT + V+ P EE+ K + + HN FD IK +G
Sbjct: 445 KFITKLTGITDDMVKEYPSIEEILPKFLDFIKDSILVAHNA-NFDVTFIKTKARNLGMEV 503
Query: 127 PVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
PV +D+L L+ N K+ T+A + G+ + HR++DD + E+
Sbjct: 504 DNPV--LDTLE-LSRHMYENLKNYKLDTVAQHLGVSLENHHRAVDDAKATAEIF 554
>gi|406670712|ref|ZP_11077957.1| exonuclease, DNA polymerase III, epsilon subunit [Facklamia hominis
CCUG 36813]
gi|405582228|gb|EKB56234.1| exonuclease, DNA polymerase III, epsilon subunit [Facklamia hominis
CCUG 36813]
Length = 841
Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 88/163 (53%), Gaps = 12/163 (7%)
Query: 19 DLETTVPR-RAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITR 77
DLE+T PR G R +++ GA+IV +++E + +L+ P ++++ + GI
Sbjct: 7 DLESTGPRLDQGDR--IIQIGAVIVSDGQVIEQKQ--SLVNPH--QELSIRIQQLTGIRS 60
Query: 78 EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLG 137
E +++AP+F ++A + F+ L V+ HN+ D +K+ FAE G P IDS+
Sbjct: 61 EELKTAPDFSQIAQEWFARLADCVFVAHNLHH-DLLFLKDHFAESGLNFDPPA--IDSI- 116
Query: 138 VLTEKFGRRAGNMKMATLASYFGL-GQQKHRSLDDVRMNLEVL 179
+L + +A + LA+ F L + H++L D ++ ++L
Sbjct: 117 LLAKICFPQARAYNLIDLAADFHLIYNEAHQALADAQITCQLL 159
>gi|261211353|ref|ZP_05925641.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
gi|260839308|gb|EEX65934.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
Length = 247
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 98/234 (41%), Gaps = 29/234 (12%)
Query: 7 SQAAGTAEIVFFDLETTVPRRAGQRFW----VLEFGAIIVCPRKLVELESFSTLIKPKDL 62
S A IV D ETT R G + ++E GA+ + RKL F +KP
Sbjct: 4 SNNAEYQRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTG-RHFHVYLKPD-- 60
Query: 63 SAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEI 122
+ L++ GIT E + PE++EV + + G HN FD + FA++
Sbjct: 61 REIQLEAIEVHGITDEFLRDKPEYKEVHAEFLDFIKGAELVAHNA-PFDVGFMDYEFAKL 119
Query: 123 GKPAPVPVG---MIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
G + D+L + F + N+ + L +G+ HR+L ++ E+L
Sbjct: 120 GSSIGKTTDFCKVTDTLAMAKRIFPGKRNNLDI--LCERYGI-DNSHRTLHGALLDAEIL 176
Query: 180 KHCATVLFLESSLPNTFNSNLQSSLTVTTRSRSNGKLPC----REETSRKSPPI 229
A V L + Q+SL + S+++G+L R + RK+ +
Sbjct: 177 ---ADVYLLMTG--------GQTSLQFSASSQNSGELGAESLKRARSGRKALKV 219
>gi|255505426|ref|ZP_05346027.3| helicase, RecD/TraA family [Bryantella formatexigens DSM 14469]
gi|255267960|gb|EET61165.1| hypothetical protein BRYFOR_06810 [Marvinbryantia formatexigens DSM
14469]
Length = 1010
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 80/174 (45%), Gaps = 11/174 (6%)
Query: 12 TAEIVFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
A+ V FDLETT + + + V+E A+ V ++ FSTL+ P + +S
Sbjct: 22 VADYVVFDLETTGISSKYDE---VIEISAVKVEAGQVTG--EFSTLVNPG--RKIPPAAS 74
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
R +GIT + V A F EV F+ V GHNI FD + + + P
Sbjct: 75 RVNGITDKMVAGALPFSEVLGDFFAFAGDFVLVGHNINSFDMKFLYRDAKKYFRKVP-DN 133
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGL-GQQKHRSLDDVRMNLEVLKHCA 183
+D+L +L + ++ LA ++G+ + HR+L+D MN +V A
Sbjct: 134 DYVDTL-LLARAALPELSHHRLVDLAEHYGISAKGAHRALNDCHMNQKVYGKLA 186
>gi|418461449|ref|ZP_13032522.1| hypothetical protein SZMC14600_10868 [Saccharomonospora azurea SZMC
14600]
gi|359738445|gb|EHK87332.1| hypothetical protein SZMC14600_10868 [Saccharomonospora azurea SZMC
14600]
Length = 566
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 73/170 (42%), Gaps = 19/170 (11%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V DLETT G + E GA+ V R L F+TL+ P + + GI
Sbjct: 18 VIVDLETTGGAPDGGD--ITEIGAVKV--RGGEVLGEFATLVDPG--QPIPPQIVALTGI 71
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
T V SAP E V + G V HN FD + +K A G P PV +
Sbjct: 72 TTAMVRSAPRIEHVLPAFLAFAEGAVLVAHNA-GFDTSFLKAACRAHGYAWPTPVVLC-- 128
Query: 136 LGVLTEKFGRR-----AGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVL 179
T K RR + +++TLA+ FG HR+LDD R ++VL
Sbjct: 129 ----TLKLARRVLRGEVRSHRLSTLAALFGASTTPTHRALDDARATVDVL 174
>gi|29374711|ref|NP_813863.1| DNA polymerase III subunit epsilon [Enterococcus faecalis V583]
gi|227555735|ref|ZP_03985782.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22]
gi|256761903|ref|ZP_05502483.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|422713135|ref|ZP_16769891.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Enterococcus faecalis TX0309A]
gi|422717758|ref|ZP_16774432.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Enterococcus faecalis TX0309B]
gi|29342169|gb|AAO79935.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis V583]
gi|227175140|gb|EEI56112.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22]
gi|256683154|gb|EEU22849.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|315573941|gb|EFU86132.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Enterococcus faecalis TX0309B]
gi|315581892|gb|EFU94083.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Enterococcus faecalis TX0309A]
Length = 289
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 24/175 (13%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLV---ELESFSTLIKPKDLSAVALKSS 70
E + FD+ETT G F + I + + V E++ F TL+ + + +
Sbjct: 7 EFIAFDIETT-----GLDFH--QDAVIQISAARYVDGIEVDYFDTLVNS---DYIPDEIT 56
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
+ GIT + V +AP +EV +F L + GHNI+ FD +K I + +
Sbjct: 57 KLTGITNDQVLNAPTLDEVMPYLFDYLGDTILVGHNIKSFDFPFLKAKGYNIAEGHEI-- 114
Query: 131 GMIDS-LGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMN----LEVLK 180
D+ T K G A N ++ TL FG+ H +L+DVR++ +E+LK
Sbjct: 115 --YDTRYFAATRKHG--AVNNQLTTLKLLFGIDAISHNALNDVRISAIVFMELLK 165
>gi|312883833|ref|ZP_07743552.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309368582|gb|EFP96115.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 244
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 82/184 (44%), Gaps = 22/184 (11%)
Query: 7 SQAAGTAEIVFFDLETTV------PRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKP- 59
S + I+ D ETT P G R ++E GA+ + RKL F IKP
Sbjct: 4 SHISDQHRIIVLDTETTGMNLEGGPHYQGHR--IIEIGAVEIINRKLTG-RHFHVYIKPD 60
Query: 60 KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAF 119
+D+ A A+ GIT E + PE+++V + + +NG HN FD + F
Sbjct: 61 RDIQAEAVG---VHGITDEFLRDKPEYKDVHAEFLAFINGAELVAHNA-SFDVGFMDYEF 116
Query: 120 ----AEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMN 175
A IGK A + D+L + + F + N+ + L +G+ HR+L ++
Sbjct: 117 SMLDASIGKTAQY-CKVTDTLAMAKKIFPGKRNNLDV--LCDRYGI-DNSHRTLHGALLD 172
Query: 176 LEVL 179
E+L
Sbjct: 173 AEIL 176
>gi|420264051|ref|ZP_14766686.1| DNA polymerase III epsilon subunit [Enterococcus sp. C1]
gi|394768950|gb|EJF48827.1| DNA polymerase III epsilon subunit [Enterococcus sp. C1]
Length = 918
Score = 53.9 bits (128), Expect = 7e-05, Method: Composition-based stats.
Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 17/180 (9%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +++FG ++V K++ F+ I P ++ + R IT +
Sbjct: 9 DLETTGTDSTIDR--IIQFGCVLVQDGKIIN--RFAADINPD--RRISKQIQRLTHITNQ 62
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V AP FE+VAD I+++L+ ++ HNI FD + F G P P+ + ID++
Sbjct: 63 QVSKAPYFEDVADTIYNLLSNTIFVAHNI-YFDYHFLSNEFVRCGLP-PLSLPGIDTVE- 119
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLES---SLPNT 195
L + F + ++ LA G +H + + EV A L++E+ LP T
Sbjct: 120 LAQVFLPTESSFRLGDLADSIGF---RHDNPHQADSDAEVT--AALFLYIEAIMRELPRT 174
>gi|325571052|ref|ZP_08146624.1| DNA polymerase III epsilon subunit [Enterococcus casseliflavus ATCC
12755]
gi|325156137|gb|EGC68323.1| DNA polymerase III epsilon subunit [Enterococcus casseliflavus ATCC
12755]
Length = 918
Score = 53.9 bits (128), Expect = 7e-05, Method: Composition-based stats.
Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 17/180 (9%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +++FG ++V K++ F+ I P ++ + R IT +
Sbjct: 9 DLETTGTDSTIDR--IIQFGCVLVQDGKIIN--RFAADINPD--RRISKQIQRLTHITNQ 62
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V AP FE+VAD I+++L+ ++ HNI FD + F G P P+ + ID++
Sbjct: 63 QVSKAPYFEDVADTIYNLLSNTIFVAHNI-YFDYHFLSNEFVRCGLP-PLSLPGIDTVE- 119
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLES---SLPNT 195
L + F + ++ LA G +H + + EV A L++E+ LP T
Sbjct: 120 LAQVFLPTESSFRLGDLADSIGF---RHDNPHQADSDAEVT--AALFLYIEAIMRELPRT 174
>gi|400291850|ref|ZP_10793837.1| exonuclease [Actinomyces naeslundii str. Howell 279]
gi|399903058|gb|EJN85826.1| exonuclease [Actinomyces naeslundii str. Howell 279]
Length = 545
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 98/213 (46%), Gaps = 22/213 (10%)
Query: 13 AEIVFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
A V DLETT P G R + E GA+ V R L FSTL+ P A+ + +
Sbjct: 13 ATFVVVDLETTGGAP---GARS-LTEIGAVKV--RGGQVLTDFSTLVNPG--VAIPAQIT 64
Query: 71 RCDGITREAVESAPEFEEVADKIFSILN----GRVWAGHNIRRFDCARIKEAFAEIGKPA 126
GIT V AP + + + V HN R FD ++ A A +G
Sbjct: 65 MLTGITNAMVAGAPGVRTCVEAFLTWADLPADDVVLVAHNAR-FDVGHLRGAAAALGLEW 123
Query: 127 PVPVGMIDSLGVLTEKFGR-RAGNMKMATLASYFG-LGQQKHRSLDDVRMNLEVLKHCAT 184
P P ++D+L + + + R N K+ TLA++ G + HR+LDD R ++VL H A
Sbjct: 124 PEP-RVLDTLALARKAWTRSEVPNHKLGTLAAFVGSRTRPTHRALDDARATVDVL-HAA- 180
Query: 185 VLFLESSLPNTFNSNLQS-SLTVTTRSRSNGKL 216
L + + L T +L + S V R R+ +L
Sbjct: 181 -LEVMAPLGVTHLEDLTTASDPVPARRRAKSRL 212
>gi|148656033|ref|YP_001276238.1| DNA polymerase III subunit epsilon [Roseiflexus sp. RS-1]
gi|148568143|gb|ABQ90288.1| DNA polymerase III, epsilon subunit [Roseiflexus sp. RS-1]
Length = 956
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query: 50 LESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
LE+FSTL++P + ++ L SSR GIT + + SAP F EVA + + L GHN+
Sbjct: 36 LETFSTLVQP--VHSLPLNSSRLTGITADMLASAPRFAEVAPRFAAFLKNYPLVGHNV-E 92
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQ-QKHRS 168
FD ++ + +PA D+ + T R +++ LA+ G+ + HR+
Sbjct: 93 FDLRMLRAQGMRLPQPA------FDTFELATLLMPRTPA-YRLSALAATLGIHHDEAHRA 145
Query: 169 LDDVRMNLEVLKHC 182
L D + ++ +
Sbjct: 146 LSDADVTRQIFLYL 159
>gi|159897533|ref|YP_001543780.1| DNA polymerase III subunit epsilon [Herpetosiphon aurantiacus DSM
785]
gi|159890572|gb|ABX03652.1| DNA polymerase III, epsilon subunit [Herpetosiphon aurantiacus DSM
785]
Length = 282
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 17/180 (9%)
Query: 12 TAEIVFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK---DLSAVAL 67
T V FD+E+T + + G R + E A+ + R++++ F L+ P+ D +A A+
Sbjct: 23 TIPFVLFDMESTGLDVQIGHR--ICEMAAMRIQGREIIDRCEF--LVNPQREIDPAAFAV 78
Query: 68 KSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAP 127
+GI+ E V +AP F E+ K+ + + V HN FD + + I P P
Sbjct: 79 -----NGISAEMVANAPSFGEIWPKVNKLFHEAVLVAHNA-YFDIGFLTSELSRIDLP-P 131
Query: 128 VPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLF 187
+ +ID+L + R N + +LA+ G HR++ DV V +H +L+
Sbjct: 132 LETPVIDTLALARRYITARRYN--LTSLATNLGEKAPSHRAMSDVVALRPVFEHLLDILY 189
>gi|295395939|ref|ZP_06806124.1| nuclease subunit of the excinuclease complex [Brevibacterium
mcbrellneri ATCC 49030]
gi|294971212|gb|EFG47102.1| nuclease subunit of the excinuclease complex [Brevibacterium
mcbrellneri ATCC 49030]
Length = 560
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 75/164 (45%), Gaps = 9/164 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT A + E GA V R + F TL++P S ++ R GIT
Sbjct: 19 DLETTGANSAQGD--ITEIGA--VKSRGGEIIGEFQTLVRPTR-SVISPFVERLTGITNS 73
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V +APE V +G + HN FD +KEA A + P P ++D++ +
Sbjct: 74 MVATAPELASVIPMFLEFAHGSILVAHNA-GFDVGFLKEACARLDYPWP-GYEVVDTVRL 131
Query: 139 LTEKFGRR-AGNMKMATLASYFGLGQ-QKHRSLDDVRMNLEVLK 180
R+ N K+ TLA++F + HR+LDD R +L+
Sbjct: 132 ARLCVTRQEVRNHKLGTLATFFNVPTPPTHRALDDARATHHILQ 175
>gi|330718588|ref|ZP_08313188.1| Rad3-related DNA helicase [Leuconostoc fallax KCTC 3537]
Length = 798
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 13/167 (7%)
Query: 16 VFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
V DLETT R G+ +++ G + RK+V+ F T + P L + + +
Sbjct: 12 VVVDLETTGQSVDRGGR---IIQIGMTFIKKRKIVD--HFETFVNPGQL--IDRQIQQLT 64
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
I++ V+ AP FEE+A I ++L V HN+ FD + E F G +P+ + I
Sbjct: 65 HISQNEVQHAPYFEEIAPVIHTLLKDSVIIAHNV-NFDYPYLNEEFERAGL-SPLDIPAI 122
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
D++ +L++ A ++ L Y + HR+ +D E+
Sbjct: 123 DTV-MLSQILLPTAPGYRLVDLTQYLDIKLSNAHRANEDAHATAELF 168
>gi|429218937|ref|YP_007180581.1| DNA polymerase III subunit epsilon family exonuclease [Deinococcus
peraridilitoris DSM 19664]
gi|429129800|gb|AFZ66815.1| exonuclease, DNA polymerase III, epsilon subunit family
[Deinococcus peraridilitoris DSM 19664]
Length = 188
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 76/171 (44%), Gaps = 14/171 (8%)
Query: 14 EIVFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
E V FDLETT P + ++E GA+ V +L+E F L+ P+ + +SR
Sbjct: 12 EYVVFDLETTGLSPEKDA----IIEIGAMYVRDGELIEAPLFHALVNPE--REIPWYASR 65
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GI V AP+ EV + R HNI FD ++ A G P
Sbjct: 66 VHGIRNAHVAGAPKLAEVLPAFLDFVGDRAVVAHNI-GFDAGFMRMATRRHGL-LWTPRE 123
Query: 132 MIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQ---KHRSLDDVRMNLEVL 179
I ++ + F R + K+ LAS FGL + +HRSL DVR+ +
Sbjct: 124 EICTVQLSRRAFPRERSH-KLDLLASRFGLSFEEGGRHRSLGDVRVTAQAF 173
>gi|290961466|ref|YP_003492648.1| exonuclease [Streptomyces scabiei 87.22]
gi|260650992|emb|CBG74110.1| putative exonuclease [Streptomyces scabiei 87.22]
Length = 331
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 10/132 (7%)
Query: 51 ESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ + TL+ P +D V + G+T + +E AP F ++A + + L RV HN
Sbjct: 54 DHWYTLVNPERDPGPVWIH-----GLTSDVLEGAPLFRDIAQEFSARLADRVLVAHNA-V 107
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRS 168
FD + I +A APV + L+++ G N K+ +LA++FG+ QQ+ H +
Sbjct: 108 FDWSMIAREYARAETEAPVRQRLCTI--ALSKELGLPLPNHKLESLAAHFGVVQQRAHHA 165
Query: 169 LDDVRMNLEVLK 180
LDD R+ E +
Sbjct: 166 LDDARVLAEAFR 177
>gi|332523978|ref|ZP_08400230.1| exonuclease DnaQ family/helicase DinG family [Streptococcus
porcinus str. Jelinkova 176]
gi|332315242|gb|EGJ28227.1| exonuclease DnaQ family/helicase DinG family [Streptococcus
porcinus str. Jelinkova 176]
Length = 820
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLE T AG +++ G +IV +K++ SF T I P + +KS GIT +
Sbjct: 12 DLEAT---NAGSDARIIQIGIVIVEDKKIIN--SFQTDINPHSKLSEHIKS--LTGITDQ 64
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAF 119
+ +APEF +VA +IF ++ V+ HN+ +FD + EA
Sbjct: 65 QLATAPEFSQVAGEIFELIKDCVFVAHNV-KFDANLLSEAL 104
>gi|313889930|ref|ZP_07823570.1| putative ATP-dependent DNA helicase DinG [Streptococcus
pseudoporcinus SPIN 20026]
gi|416850978|ref|ZP_11908319.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus pseudoporcinus LQ 940-04]
gi|313121696|gb|EFR44795.1| putative ATP-dependent DNA helicase DinG [Streptococcus
pseudoporcinus SPIN 20026]
gi|356740657|gb|EHI65880.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus pseudoporcinus LQ 940-04]
Length = 820
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLE T AG +++ G +IV +K+++ F T I P + +KS GIT +
Sbjct: 12 DLEAT---NAGSDARIIQIGIVIVENKKIID--RFQTDINPHSKLSEHIKS--LTGITDQ 64
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAF 119
+ SAPEF +VA +IF ++ V+ HN+ +FD + EA
Sbjct: 65 QLASAPEFSQVASQIFELIKDCVFVAHNV-KFDANLLAEAL 104
>gi|390934922|ref|YP_006392427.1| DNA polymerase III polC-type [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389570423|gb|AFK86828.1| DNA polymerase III polC-type [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
Length = 1410
Score = 53.9 bits (128), Expect = 8e-05, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 11/165 (6%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V FD+ETT ++E GA+ + ++V+ +F T + P+ ++ ++ GI
Sbjct: 400 VVFDIETTGLSSINDN--IIEIGAVKIKNCQIVD--TFETFVNPQ--VHISKFITKLTGI 453
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
T + V+ P EE+ K + + HN FD IK +G PV +D+
Sbjct: 454 TDDMVKEYPSIEEILPKFLDFIKDSILVAHNA-NFDVTFIKTKARNLGMEVDNPV--LDT 510
Query: 136 LGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
L L+ N K+ T+A + G+ + HR++DD + E+
Sbjct: 511 LE-LSRHMYENLKNYKLDTVAQHLGVSLENHHRAVDDAKATAEIF 554
>gi|365867336|ref|ZP_09406919.1| DNA polymerase III subunit epsilon [Streptomyces sp. W007]
gi|364003202|gb|EHM24359.1| DNA polymerase III subunit epsilon [Streptomyces sp. W007]
Length = 340
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 86/193 (44%), Gaps = 38/193 (19%)
Query: 51 ESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ + TL+ P +D V + G+T + +E AP F +VA ++ L RV HN
Sbjct: 53 DHWYTLVNPERDPGPVWIH-----GLTSDVLEGAPLFPDVAAELSERLKDRVLVAHNA-A 106
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRS 168
FD + I +A APV + L ++ N K+A+LA++FG+ QQ+ H +
Sbjct: 107 FDWSMIAREYARASVIAPVEHRLCTI--ALAKELRLPLPNHKLASLAAHFGVVQQQAHHA 164
Query: 169 LDDVRMNLEVLKHCATVLFLESSLPNTFNSNLQSSLTVTTRSRSNGKLP---CREETSRK 225
LDD R+ L F +L ++ +R +LP CR T
Sbjct: 165 LDDARV-----------------LAEAFRPSLHAA------ARGGVRLPLLECRPLTEWS 201
Query: 226 SPPIS--LGYQRS 236
P++ +GYQ S
Sbjct: 202 DSPVTPRVGYQSS 214
>gi|294811879|ref|ZP_06770522.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
27064]
gi|326440385|ref|ZP_08215119.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
27064]
gi|294324478|gb|EFG06121.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
27064]
Length = 334
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 10/132 (7%)
Query: 51 ESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ + TL+ P +D V + G+T + + AP F+++AD+ L+GRV HN
Sbjct: 52 DHWYTLVNPERDPGPVWIH-----GLTSDVLAGAPLFQDIADEFSQRLDGRVLVAHNA-M 105
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQ-QKHRS 168
FD + I +A + AP + L ++ N K+ +LA++FG+ Q Q H +
Sbjct: 106 FDWSMIAREYARARRTAPTRQRLCTI--ALAKELRLPLPNHKLESLAAHFGVVQRQAHHA 163
Query: 169 LDDVRMNLEVLK 180
LDD R+ E +
Sbjct: 164 LDDARVLAEAFR 175
>gi|407795567|ref|ZP_11142525.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Salimicrobium sp. MJ3]
gi|407019908|gb|EKE32622.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Salimicrobium sp. MJ3]
Length = 976
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 7/177 (3%)
Query: 4 FIPSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLS 63
F + + DLETT +G+ ++E G +++ K+ E FST I P+ +
Sbjct: 22 FFRKEVVNVSTYAIIDLETT-GNSSGRGDKIIEIGIVVMESDKVTE--EFSTFIYPE--A 76
Query: 64 AVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
+ S GIT + V AP F E+ + +L HNI FD I +A A++G
Sbjct: 77 EIPPFISNLTGITDDHVMDAPLFSEIVPDLKRLLRQDYVIAHNI-DFDLTFINDALAQLG 135
Query: 124 KPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLK 180
+ + +ID++ + + +G+ S Q HR++ D R+ E+ K
Sbjct: 136 EDQ-ISAKVIDTVELSRVLMPKASGHKLSELSESLELSHDQPHRAISDARVTAELWK 191
>gi|54023690|ref|YP_117932.1| hypothetical protein nfa17220 [Nocardia farcinica IFM 10152]
gi|54015198|dbj|BAD56568.1| putative DNA polymerase III subunit [Nocardia farcinica IFM 10152]
Length = 598
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 76/171 (44%), Gaps = 20/171 (11%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V DLETT G + E GA+ V R L F+TL+ P A+ + GI
Sbjct: 28 VVVDLETTGTSPEGDA--ITEIGAVKV--RGGEVLGEFATLVNPG--RAIPPAVVQVTGI 81
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
T V +AP E V G V HN RFD A ++ A A P P D+
Sbjct: 82 TTALVYAAPRIEAVLPGFLEFAAGAVLVAHNA-RFDTAFLRAAAARCALPWP------DA 134
Query: 136 LGVLTEKFGRR------AGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVL 179
+ T K RR A ++++A+LA G Q HR+LDD R ++VL
Sbjct: 135 PVLCTVKLARRVLGRDEAPSVRLASLARLLGASTQPTHRALDDARATVDVL 185
>gi|429885885|ref|ZP_19367455.1| DNA polymerase III epsilon subunit [Vibrio cholerae PS15]
gi|429227255|gb|EKY33303.1| DNA polymerase III epsilon subunit [Vibrio cholerae PS15]
Length = 247
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 103/235 (43%), Gaps = 31/235 (13%)
Query: 7 SQAAGTAEIVFFDLETTVPRRAGQRFW----VLEFGAIIVCPRKLVELESFSTLIKPKDL 62
S A IV D ETT R G + ++E GA+ + RKL F +KP
Sbjct: 4 SNNAEYQRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTG-RHFHVYLKPD-- 60
Query: 63 SAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAE- 121
+ L++ GIT E ++ PE+++V ++ + G HN FD + FA+
Sbjct: 61 RDIQLEAIEVHGITDEFLKDKPEYKDVHEEFLDFIKGAELVAHNA-PFDVGFMDYEFAKL 119
Query: 122 ---IGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEV 178
IGK + + D+L + F + N+ + L +G+ HR+L ++ E+
Sbjct: 120 GGAIGKTSDF-CKVTDTLAMAKRIFPGKRNNLDI--LCERYGI-DNSHRTLHGALLDAEI 175
Query: 179 LKHCATVLFLESSLPNTFNSNLQSSLTVTTRSRSNGKLPC----REETSRKSPPI 229
L A V L + Q+SL ++ ++++G+L R + RK+ +
Sbjct: 176 L---ADVYLLMTG--------GQTSLQFSSATQNSGELSAELLKRARSERKALKV 219
>gi|153829952|ref|ZP_01982619.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 623-39]
gi|422923536|ref|ZP_16956684.1| DNA polymerase III, epsilon subunit [Vibrio cholerae BJG-01]
gi|148874587|gb|EDL72722.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 623-39]
gi|341643966|gb|EGS68225.1| DNA polymerase III, epsilon subunit [Vibrio cholerae BJG-01]
Length = 247
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 103/235 (43%), Gaps = 31/235 (13%)
Query: 7 SQAAGTAEIVFFDLETTVPRRAGQRFW----VLEFGAIIVCPRKLVELESFSTLIKPKDL 62
S A IV D ETT R G + ++E GA+ + RKL F +KP
Sbjct: 4 SNNAEYQRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTG-RHFHVYLKPD-- 60
Query: 63 SAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAE- 121
+ L++ GIT E ++ PE+++V ++ + G HN FD + FA+
Sbjct: 61 RDIQLEAIEVHGITDEFLKDKPEYKDVHEEFLDFIKGAELVAHNA-PFDVGFMDYEFAKL 119
Query: 122 ---IGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEV 178
IGK + + D+L + F + N+ + L +G+ HR+L ++ E+
Sbjct: 120 SGAIGKTSDF-CKVTDTLAMAKRIFPGKRNNLDI--LCERYGI-DNSHRTLHGALLDAEI 175
Query: 179 LKHCATVLFLESSLPNTFNSNLQSSLTVTTRSRSNGKLPC----REETSRKSPPI 229
L A V L + Q+SL ++ ++++G+L R + RK+ +
Sbjct: 176 L---ADVYLLMTG--------GQTSLQFSSATQNSGELSAELLKRARSERKALKV 219
>gi|332668025|ref|YP_004450813.1| DNA polymerase III subunit epsilon [Haliscomenobacter hydrossis DSM
1100]
gi|332336839|gb|AEE53940.1| DNA polymerase III, epsilon subunit [Haliscomenobacter hydrossis
DSM 1100]
Length = 463
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+ETT + + R ++E +I ++ LES+ +LI P+ L + + GI +
Sbjct: 9 DVETTGGKASRDR--IIEIAVVIHDGNQI--LESWESLINPETL--IPWNITILTGINDQ 62
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V +AP+F EVA KI + G ++ HN RFD + I E F +G +
Sbjct: 63 MVANAPKFYEVARKIVELTEGAIFVAHNA-RFDYSFIGEEFKRLGYTYTRK-------QL 114
Query: 139 LTEKFGRRA----GNMKMATLASYFGL-GQQKHRSLDDVRMNLEVLKH 181
T + R+ + L+ +F + Q +HR++ DV+ ++VL++
Sbjct: 115 CTLRLARQTLPGLYAYGLDALSRHFNIHNQARHRAMGDVQATIKVLEY 162
>gi|319407879|emb|CBI81531.1| DNA polymerase III epsilon chain [Bartonella schoenbuchensis R1]
Length = 235
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 93/221 (42%), Gaps = 21/221 (9%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
+ FD ETT + R ++E G + + R L + F + P+ + + + G+
Sbjct: 4 IIFDTETTGLDKDSDR--IIEIGCVEMVDRYLTK-RQFHVYLNPQGV-IIPDEVVAIHGL 59
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
T E +++ +FE++AD+ ++G HN FD + + I KP +ID+
Sbjct: 60 TNERLKNEKKFEDIADEFLEFIDGATMVAHN-ASFDISFLNAELGRINKPLISVDNVIDT 118
Query: 136 LGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLF------LE 189
L + +KF G + L FG+ +R L ++ E+L L L
Sbjct: 119 LAIARQKFP--MGPNSLDVLCKRFGI-DNSNRVLHGALLDAEILADVYIELIGGKQGVLS 175
Query: 190 SSLPNTFNSNLQS----SLTVTTRSRSNGKLPCREETSRKS 226
+ + N+Q+ S TV TR + LP R T K
Sbjct: 176 FDNNSDLDENIQNGKNVSHTVKTRPHA---LPSRLSTQEKD 213
>gi|431797912|ref|YP_007224816.1| DNA polymerase III subunit epsilon family exonuclease [Echinicola
vietnamensis DSM 17526]
gi|430788677|gb|AGA78806.1| exonuclease, DNA polymerase III, epsilon subunit family [Echinicola
vietnamensis DSM 17526]
Length = 457
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 7/111 (6%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+ETT G+R + E A+ ++ L+SF TLI P D + GI +
Sbjct: 7 DIETTGGY--GKRHRITEVAAVAHNGSQI--LDSFQTLINP-DCEIPGFITG-LTGIDQS 60
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVP 129
VE AP FE++AD++++ L +++ HN+ FD I+ F IGK P
Sbjct: 61 MVEGAPYFEDIADELYAFLEDKIFVAHNV-NFDYQFIRSEFERIGKSFDRP 110
>gi|357414170|ref|YP_004925906.1| DNA polymerase III subunit epsilon [Streptomyces flavogriseus ATCC
33331]
gi|320011539|gb|ADW06389.1| DNA polymerase III, epsilon subunit [Streptomyces flavogriseus ATCC
33331]
Length = 346
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 51 ESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ + TL+ P +D V + G+T + +E AP F +VA ++ L GRV HN
Sbjct: 64 DHWYTLVNPERDPGPVWIH-----GLTSDVLEGAPLFPQVAAELSERLAGRVLVAHNA-A 117
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRS 168
FD + I +A APV + L ++ N K+ +LA++FG+ QQ H +
Sbjct: 118 FDWSMIAREYARAAVTAPVEQRLCTI--ALAKELRLPLPNHKLESLAAHFGVVQQHAHHA 175
Query: 169 LDDVRMNLEVLK 180
LDD R+ E +
Sbjct: 176 LDDARVLAEAFR 187
>gi|162455854|ref|YP_001618221.1| DNA polymerase III subunit epsilon [Sorangium cellulosum So ce56]
gi|161166436|emb|CAN97741.1| DNA polymerase III, epsilon subunit [Sorangium cellulosum So ce56]
Length = 258
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 84/194 (43%), Gaps = 18/194 (9%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
I F D+ETT AG R ++E G IV R L ++ LI P + +S+ G
Sbjct: 45 IAFVDVETTGRDPAGDR--IIELG--IVIGRSGEILTRYNWLIHPG--RPIPAESTAIHG 98
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNI---RRFDCARIKEAFAEIGKPAPV--- 128
I VE P F EVA++I G + A +N R F A ++ +P P
Sbjct: 99 IKDADVEGKPSFAEVAEEILGCFKGAIPAAYNATFDRSFLLAELERVGMRPREPPPAMRR 158
Query: 129 PVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVLF 187
V +D L E + + + + +A+ G+ +K HR+ DD L+VL A
Sbjct: 159 EVDWVDPLTFARELY-KNEESRALGDMAARLGISLEKAHRATDDAEAALQVLYALAK--- 214
Query: 188 LESSLPNTFNSNLQ 201
+ +P + +Q
Sbjct: 215 -DPRVPRAYGGLIQ 227
>gi|153825368|ref|ZP_01978035.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-2]
gi|183179467|ref|ZP_02957678.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-3]
gi|229524236|ref|ZP_04413641.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
VL426]
gi|229528763|ref|ZP_04418153.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
gi|254225776|ref|ZP_04919381.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V51]
gi|254286458|ref|ZP_04961415.1| DNA polymerase III, epsilon subunit [Vibrio cholerae AM-19226]
gi|262192140|ref|ZP_06050301.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
gi|297580875|ref|ZP_06942800.1| DNA polymerase III [Vibrio cholerae RC385]
gi|384425198|ref|YP_005634556.1| DNA polymerase III subunit epsilon [Vibrio cholerae LMA3984-4]
gi|417821565|ref|ZP_12468179.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE39]
gi|417825468|ref|ZP_12472056.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE48]
gi|422911072|ref|ZP_16945700.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-09]
gi|423957540|ref|ZP_17735283.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-40]
gi|423985520|ref|ZP_17738834.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-46]
gi|424660736|ref|ZP_18097983.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-16]
gi|125621682|gb|EAZ50011.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V51]
gi|149741052|gb|EDM55121.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-2]
gi|150423407|gb|EDN15351.1| DNA polymerase III, epsilon subunit [Vibrio cholerae AM-19226]
gi|183012878|gb|EDT88178.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-3]
gi|229332537|gb|EEN98023.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
gi|229337817|gb|EEO02834.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
VL426]
gi|262031989|gb|EEY50566.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
gi|297534701|gb|EFH73537.1| DNA polymerase III [Vibrio cholerae RC385]
gi|327484751|gb|AEA79158.1| DNA polymerase III epsilon subunit [Vibrio cholerae LMA3984-4]
gi|340039196|gb|EGR00171.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE39]
gi|340046953|gb|EGR07883.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE48]
gi|341632444|gb|EGS57310.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-09]
gi|408050109|gb|EKG85282.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-16]
gi|408656532|gb|EKL27626.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-40]
gi|408663637|gb|EKL34499.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-46]
Length = 247
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 103/235 (43%), Gaps = 31/235 (13%)
Query: 7 SQAAGTAEIVFFDLETTVPRRAGQRFW----VLEFGAIIVCPRKLVELESFSTLIKPKDL 62
S A IV D ETT R G + ++E GA+ + RKL F +KP
Sbjct: 4 SNNAEYQRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTG-RHFHVYLKPD-- 60
Query: 63 SAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAE- 121
+ L++ GIT E ++ PE+++V ++ + G HN FD + FA+
Sbjct: 61 RDIQLEAIEVHGITDEFLKDKPEYKDVHEEFLDFIKGAELVAHNA-PFDVGFMDYEFAKL 119
Query: 122 ---IGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEV 178
IGK + + D+L + F + N+ + L +G+ HR+L ++ E+
Sbjct: 120 GGAIGKTSDF-CKVTDTLAMAKRIFPGKRNNLDI--LCERYGI-DNSHRTLHGALLDAEI 175
Query: 179 LKHCATVLFLESSLPNTFNSNLQSSLTVTTRSRSNGKLPC----REETSRKSPPI 229
L A V L + Q+SL ++ ++++G+L R + RK+ +
Sbjct: 176 L---ADVYLLMTG--------GQTSLQFSSATQNSGELSAESLKRARSERKALKV 219
>gi|423669181|ref|ZP_17644210.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VDM034]
gi|423674690|ref|ZP_17649629.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VDM062]
gi|401299738|gb|EJS05334.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VDM034]
gi|401309272|gb|EJS14637.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VDM062]
Length = 315
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ C +LV+ F + + P+ + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYCNHELVD--QFVSYVNPE--RPIPSRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EV + L+ + HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIAEVLPLFLAFLDTNIIVAHN-ASFDMRFLKSNVNMLGLPEP-KNNVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA V
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAV 171
>gi|383820435|ref|ZP_09975692.1| DNA polymerase III subunit epsilon [Mycobacterium phlei RIVM601174]
gi|383335437|gb|EID13868.1| DNA polymerase III subunit epsilon [Mycobacterium phlei RIVM601174]
Length = 312
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 16/135 (11%)
Query: 51 ESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRF 110
+S +L+ P V + G+T E +E P F ++ D + +L GR HN+ F
Sbjct: 32 QSLYSLLNP----GVDPGPTHVHGLTAEMLEGQPTFADIVDHLIDLLAGRTLVAHNV-GF 86
Query: 111 DCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAG----NMKMATLASYFGLGQQK- 165
D + + +G+ P M T + RR N+++ TLA ++G+ Q K
Sbjct: 87 DYSFLAAEAEMVGRELPTDTVMC------TVELARRLDLGTENLRLETLARHWGIDQMKP 140
Query: 166 HRSLDDVRMNLEVLK 180
H +LDD + ++LK
Sbjct: 141 HDALDDALVLAQILK 155
>gi|410617632|ref|ZP_11328597.1| DNA polymerase III subunit epsilon [Glaciecola polaris LMG 21857]
gi|410162763|dbj|GAC32735.1| DNA polymerase III subunit epsilon [Glaciecola polaris LMG 21857]
Length = 733
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V D+ETT + G R + E GA+ V K+V+ S+S+LI P+ V +R GI
Sbjct: 569 VVIDVETTGGCKPGHR--ITEIGAVKVINGKVVD--SWSSLINPQ--RRVPHFITRLTGI 622
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
+ E VE AP F EV D + + + ++ HN+ FD K + + + +P
Sbjct: 623 SNEMVEDAPLFCEVLDTLEAFMQNGIFVAHNV-NFDYGFFKLEYERLDRTFSMP-----K 676
Query: 136 LGVLTE--KFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
L + E K+ + + + L +GL HR+L D + E+L
Sbjct: 677 LCTVREMRKYYPGSKSYALGKLTKEYGLSLDHHHRALCDAKAAAELL 723
>gi|343522506|ref|ZP_08759472.1| exonuclease [Actinomyces sp. oral taxon 175 str. F0384]
gi|343401915|gb|EGV14421.1| exonuclease [Actinomyces sp. oral taxon 175 str. F0384]
Length = 545
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 84/182 (46%), Gaps = 18/182 (9%)
Query: 13 AEIVFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
A V DLETT P G R + E GA+ V R L FSTL+ P A+ + +
Sbjct: 13 ATFVVVDLETTGGAP---GARS-LTEIGAVKV--RGGQVLAEFSTLVNPG--VAIPAQIT 64
Query: 71 RCDGITREAVESAPEF----EEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPA 126
GIT V AP E D + + V HN R FD ++ A A +G
Sbjct: 65 MLTGITNAMVAGAPGVRTCVETFLDWADLMADDVVLVAHNAR-FDVGHLRGAAAALGLEW 123
Query: 127 PVPVGMIDSLGVLTEKFGR-RAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHCAT 184
P P ++D+L + + + R N K+ TLA++ G + HR+LDD R ++VL
Sbjct: 124 PEP-RVLDTLALARKVWTRSEVPNHKLGTLAAFVGSQIRPTHRALDDARATVDVLHGALE 182
Query: 185 VL 186
V+
Sbjct: 183 VM 184
>gi|240146656|ref|ZP_04745257.1| DNA polymerase III, alpha chain [Roseburia intestinalis L1-82]
gi|257201200|gb|EEU99484.1| DNA polymerase III, alpha chain [Roseburia intestinalis L1-82]
Length = 226
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 82/170 (48%), Gaps = 13/170 (7%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V +DLETT V+E A+ V K+V+ FS L+ P + +S +
Sbjct: 16 DYVLYDLETTGISSLYDE--VIEISAVKVRNGKIVD--EFSELVNPG--RPIPYAASSVN 69
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGK--PAPVPVG 131
I+ + VE+A FE+V + + V AGHNI FD +K + + K +
Sbjct: 70 NISDKMVENARSFEKVLPEFLAFAGDDVLAGHNIAGFD---MKFLYRDCEKYFGQTLTND 126
Query: 132 MIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLK 180
ID+L + F + K++ LA ++G+ + HR+L D RMN +V +
Sbjct: 127 YIDTLAIAKLCFPEWK-HRKLSDLAEHYGISTKGAHRALADCRMNQQVFE 175
>gi|357235704|ref|ZP_09123047.1| DNA polymerase III, epsilon subunit family protein [Streptococcus
criceti HS-6]
gi|356883686|gb|EHI73886.1| DNA polymerase III, epsilon subunit family protein [Streptococcus
criceti HS-6]
Length = 185
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 82/174 (47%), Gaps = 11/174 (6%)
Query: 11 GTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
G A+ D+ETT A + ++E AI V R+ + FS LI P +K
Sbjct: 17 GLADYTVVDIETTGMSGAAAK--IIEISAIQV--RQHQPVAEFSMLINPHQKLTYFIK-- 70
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
+ GIT ++ APE EEV + L V GHN+ FD + + F K +
Sbjct: 71 QLTGITDAMLDRAPEIEEVLAQFKDFLGQDVIVGHNV-HFDVNFLYDNFLHYRKEY-LTN 128
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLKHCA 183
+D+L L+ K+ + N ++ L Y+G ++ KHR+L+D + +V + A
Sbjct: 129 DFVDTLR-LSRKYLDLSRN-RLDDLIDYYGFAKRDKHRALNDCLLTQQVYEVLA 180
>gi|124005083|ref|ZP_01689925.1| exonuclease [Microscilla marina ATCC 23134]
gi|123989335|gb|EAY28896.1| exonuclease [Microscilla marina ATCC 23134]
Length = 245
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 84/203 (41%), Gaps = 20/203 (9%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
IVFFDLETT R + AII ++E LI P + + ++ G
Sbjct: 7 IVFFDLETTGTDTLNDRIVQI---AIIKLAADGTKVEK-ERLINPT--IPIPPEVTKVHG 60
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVP-VGMI 133
++ E V+ AP F +VA +F + G AG+N FD + E FA G P P V I
Sbjct: 61 VSDEMVKDAPTFHQVAKSLFEFIRGCDLAGYNHLNFDMPLLIEEFARAGVVFPEPDVQYI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-----HRSLDDVRMNLEVLKHCATVLFL 188
D + V R TL++ + L K H ++ D + LE+ + F
Sbjct: 121 DVMKVYYHFHPR--------TLSAAYQLYCHKELENAHNAMADTQATLEIFESQLATHFD 172
Query: 189 ESSLPNTFNSNLQSSLTVTTRSR 211
E N ++ SS V R
Sbjct: 173 EEPSINEIHNLCFSSRHVDFSRR 195
>gi|455649317|gb|EMF28134.1| DNA polymerase III subunit epsilon [Streptomyces gancidicus BKS
13-15]
Length = 327
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
G+T E +E AP F ++A + + L GRV HN FD I +A APV +
Sbjct: 74 GLTSEMLEGAPLFADIAAEFAARLEGRVLVAHNA-VFDWQMIAREYARARGEAPVRQRLC 132
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLK 180
L+++ G N K+ +LA++FG+ Q++ H +LDD R+ E +
Sbjct: 133 TI--ALSKELGLPLPNHKLESLAAHFGVVQRRAHHALDDARVLAEAFR 178
>gi|90961663|ref|YP_535579.1| ATP-dependent helicase DinG [Lactobacillus salivarius UCC118]
gi|90820857|gb|ABD99496.1| ATP-dependent helicase, DinG family [Lactobacillus salivarius
UCC118]
Length = 929
Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT P++ G +++F V K+V FSTLI P + ++ + GI +
Sbjct: 11 DLETTGPKQDGSD-KIIQFSCDFVQSNKIVN--HFSTLINPG--MPIPVEVKKLTGIKDK 65
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V AP F+EVA I+++L + HN+ FD + + G P + + M+D++
Sbjct: 66 DVRYAPYFDEVAGTIYAMLQNTTFVAHNV-NFDYSFLSSELERAGYPE-LELPMMDTVQ- 122
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDDVRMNLEVL 179
LT+ + ++ ++ Y L H++ D + E+L
Sbjct: 123 LTQIIYPTLVSYRLIDISKYLQLSHIHPHKADSDTKATAELL 164
>gi|301300766|ref|ZP_07206950.1| putative DnaQ family exonuclease/DinG family helicase
[Lactobacillus salivarius ACS-116-V-Col5a]
gi|300851616|gb|EFK79316.1| putative DnaQ family exonuclease/DinG family helicase
[Lactobacillus salivarius ACS-116-V-Col5a]
Length = 929
Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT P++ G +++F V K+V FSTLI P + ++ + GI +
Sbjct: 11 DLETTGPKQDGSD-KIIQFSCDFVQSNKIVN--HFSTLINPG--MPIPVEVKKLTGIKDK 65
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V AP F+EVA I+++L + HN+ FD + + G P + + M+D++
Sbjct: 66 DVRYAPYFDEVAGTIYAMLQNTTFVAHNV-NFDYSFLSSELERAGYPE-LELPMMDTVQ- 122
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDDVRMNLEVL 179
LT+ + ++ ++ Y L H++ D + E+L
Sbjct: 123 LTQIIYPTLVSYRLIDISKYLQLSHIHPHKADSDTKATAELL 164
>gi|239991387|ref|ZP_04712051.1| DNA polymerase III [Streptomyces roseosporus NRRL 11379]
gi|291448385|ref|ZP_06587775.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291351332|gb|EFE78236.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length = 641
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 13/169 (7%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK-DLSAVALKSSRC 72
+ D+ET+ +R VL I + P + FSTL+ P D V +
Sbjct: 19 DWALVDVETS--GLVARRDRVLSVAVITIGPDG-EQTGEFSTLLDPGCDPGPVEVH---- 71
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
G+T E + AP F++VA +I ++L RV HN +FD + FA PV +
Sbjct: 72 -GLTAERLRGAPTFDQVAGRIGAMLQDRVLVAHNA-QFDYDFLAHEFARARMWLPVSQRL 129
Query: 133 IDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLK 180
L + +MK+ TLA+++ + QQ+ H +LDD R+ +L+
Sbjct: 130 CTL--ALNRQVDPPTDDMKLGTLATHYDVPQQRAHDALDDTRVLAGILR 176
>gi|90415683|ref|ZP_01223617.1| DNA polymerase III, epsilon subunit [gamma proteobacterium
HTCC2207]
gi|90333006|gb|EAS48176.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
HTCC2207]
Length = 528
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
++V DLETT + R ++E G +++ K+ LE + + + P+ + ++ +
Sbjct: 23 KMVLLDLETTGGKATHHR--IIEIGLLVIEQGKV--LERWQSFVDPETVLPPFIQ--KLT 76
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPV-PVGM 132
GI + AP F EVA+ + + LN R HN RFD +K F IG P+
Sbjct: 77 GIAPSMLRGAPLFSEVAETLLTYLNDRTLVAHNA-RFDYGFLKNEFQRIGISYNAKPLCS 135
Query: 133 IDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRM 174
+ L +F R + + F L + +HR+LDD M
Sbjct: 136 VKFSRSLYPQFKRHG----LDQIIKRFQLPIENRHRALDDAEM 174
>gi|154505436|ref|ZP_02042174.1| hypothetical protein RUMGNA_02959 [Ruminococcus gnavus ATCC 29149]
gi|336434007|ref|ZP_08613813.1| hypothetical protein HMPREF0991_02932 [Lachnospiraceae bacterium
2_1_58FAA]
gi|153794279|gb|EDN76699.1| topoisomerase DNA-binding C4 zinc finger domain protein
[Ruminococcus gnavus ATCC 29149]
gi|336014746|gb|EGN44580.1| hypothetical protein HMPREF0991_02932 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 219
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 9/167 (5%)
Query: 18 FDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITR 77
FDLETT + ++E A+ V + + ++FSTL+ P + ++++ +GIT
Sbjct: 18 FDLETTGI--SANMDDIIEISAVKV--KGGIVQDTFSTLVNPG--RHIPAQATKVNGITD 71
Query: 78 EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLG 137
+ V AP E + + + GHNI+ FD I E+ + V ID+L
Sbjct: 72 QMVSEAPLIREAMTEFLRFVGEDILVGHNIQSFDMKFIYREVEELFQET-VSNDFIDTL- 129
Query: 138 VLTEKFGRRAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLKHCA 183
+ K + ++ LA +FG+ + HR+L+D MN + + A
Sbjct: 130 YMARKCLPELKHHRLTDLAEHFGISSKGAHRALNDCVMNQKCFEEMA 176
>gi|256372239|ref|YP_003110063.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium
ferrooxidans DSM 10331]
gi|256008823|gb|ACU54390.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium
ferrooxidans DSM 10331]
Length = 475
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 73/171 (42%), Gaps = 12/171 (7%)
Query: 12 TAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCP-RKLVELESFSTLIKPKDLSAVALKSS 70
T D+ETT E ++V R L L+S +P + VAL
Sbjct: 15 TVRFAILDVETTGAASGADELT--EVAMMVVQEGRALAHLQSLVHTDRPIPPAIVALT-- 70
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAP-VP 129
GI+ E V AP V ++ +L G V GHN+ RFD + + A G P VP
Sbjct: 71 ---GISNELVADAPSARTVIERTARLLEGTVMVGHNV-RFDRSFLGAAADAAGITLPEVP 126
Query: 130 VGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLK 180
V +D+L + N ++ATLA Y L HR++ DV + +L
Sbjct: 127 V--LDTLTLSRVLLDGEVPNHRLATLAHYLQLPPPSHRAMADVVTTVALLH 175
>gi|418961294|ref|ZP_13513181.1| ATP-dependent helicase DinG [Lactobacillus salivarius SMXD51]
gi|380344961|gb|EIA33307.1| ATP-dependent helicase DinG [Lactobacillus salivarius SMXD51]
Length = 929
Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 9/162 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT P++ G +++F V K+V FSTLI P + ++ + GI +
Sbjct: 11 DLETTGPKQDGSD-KIIQFSCDFVQSNKIVN--HFSTLINPG--MPIPVEVKKLTGIKDK 65
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V AP F+EVA I+++L + HN+ FD + + G P + + M+D++
Sbjct: 66 DVRYAPYFDEVAGTIYAMLQNTTFVAHNV-NFDYSFLSSELERAGYPE-LELPMMDTVQ- 122
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDDVRMNLEVL 179
LT+ + ++ ++ Y L H++ D + E+L
Sbjct: 123 LTQIIYPTLVSYRLIDISKYLQLSHIHPHKADSDTKATAELL 164
>gi|229513876|ref|ZP_04403338.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
gi|421351953|ref|ZP_15802318.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-25]
gi|422308174|ref|ZP_16395327.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1035(8)]
gi|229349057|gb|EEO14014.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
gi|395952398|gb|EJH63012.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-25]
gi|408618039|gb|EKK91128.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1035(8)]
Length = 247
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 103/235 (43%), Gaps = 31/235 (13%)
Query: 7 SQAAGTAEIVFFDLETTVPRRAGQRFW----VLEFGAIIVCPRKLVELESFSTLIKPKDL 62
S A IV D ETT R G + ++E GA+ + RKL F +KP
Sbjct: 4 SNNAEYQRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTG-RHFHVYLKPD-- 60
Query: 63 SAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAE- 121
+ L++ GIT E ++ PE+++V ++ + G HN FD + FA+
Sbjct: 61 RDIQLEAIEVHGITDEFLKDKPEYKDVHEEFLDFIKGAELVAHNA-PFDVGFMDYEFAKL 119
Query: 122 ---IGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEV 178
IGK + + D+L + F + N+ + L +G+ HR+L ++ E+
Sbjct: 120 GGAIGKTSDF-CKVTDTLAMAKRIFPGKRNNLDI--LCERYGI-DNSHRTLHGALLDAEI 175
Query: 179 LKHCATVLFLESSLPNTFNSNLQSSLTVTTRSRSNGKLPC----REETSRKSPPI 229
L A V L + Q+SL ++ ++++G+L R + RK+ +
Sbjct: 176 L---ADVYLLMTG--------GQTSLQFSSVTQNSGELSAESLKRARSERKALKV 219
>gi|408677192|ref|YP_006877019.1| DNA polymerase III epsilon subunit [Streptomyces venezuelae ATCC
10712]
gi|328881521|emb|CCA54760.1| DNA polymerase III epsilon subunit [Streptomyces venezuelae ATCC
10712]
Length = 330
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 51 ESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ + TL+ P +D V + G+T + + AP F E+A + + L+GRV HN
Sbjct: 53 DHWYTLVNPERDPGPVWIH-----GLTTDVLAGAPLFPEIAAEFAARLDGRVLVAHNA-M 106
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRS 168
FD I +A APV + L ++ N K+ +LA++FG+ QQ+ H +
Sbjct: 107 FDWQMIAREYARAESAAPVRQRLCTI--ALAKELSLPLPNHKLESLAAHFGVVQQRAHNA 164
Query: 169 LDDVRMNLEVLK 180
LDD R+ E +
Sbjct: 165 LDDARVLAEAFR 176
>gi|304384907|ref|ZP_07367253.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus
acidilactici DSM 20284]
gi|418069118|ref|ZP_12706398.1| Rad3-related DNA helicase [Pediococcus acidilactici MA18/5M]
gi|304329101|gb|EFL96321.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus
acidilactici DSM 20284]
gi|357537851|gb|EHJ21874.1| Rad3-related DNA helicase [Pediococcus acidilactici MA18/5M]
Length = 927
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 51 ESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRF 110
E++ T I P+ + + SR GIT + V AP+F +VADKI+ L G V+ HN+ F
Sbjct: 39 ETYQTKINPQ--MTIPKRISRLTGITDQQVRQAPKFADVADKIYQKLAGTVFVAHNV-NF 95
Query: 111 DCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLD 170
D + G P + + ID++ + F R G ++ L +Y + S D
Sbjct: 96 DFPFLNRELVRSGYPE-LDLKAIDTVTLSQVLFSRTRG-YRLRDLTNYLHIEHDDPHSAD 153
>gi|270290279|ref|ZP_06196504.1| DnaQ family exonuclease/DinG family helicase [Pediococcus
acidilactici 7_4]
gi|270281060|gb|EFA26893.1| DnaQ family exonuclease/DinG family helicase [Pediococcus
acidilactici 7_4]
Length = 927
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 51 ESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRF 110
E++ T I P+ + + SR GIT + V AP+F +VADKI+ L G V+ HN+ F
Sbjct: 39 ETYQTKINPQ--MTIPKRISRLTGITDQQVRQAPKFADVADKIYQKLAGTVFVAHNV-NF 95
Query: 111 DCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLD 170
D + G P + + ID++ + F R G ++ L +Y + S D
Sbjct: 96 DFPFLNRELVRSGYPE-LDLKAIDTVTLSQVLFSRTRG-YRLRDLTNYLHIEHDDPHSAD 153
>gi|262404569|ref|ZP_06081124.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
gi|262349601|gb|EEY98739.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
Length = 247
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 99/234 (42%), Gaps = 29/234 (12%)
Query: 7 SQAAGTAEIVFFDLETTVPRRAGQRFW----VLEFGAIIVCPRKLVELESFSTLIKPKDL 62
S A IV D ETT R G + ++E GA+ + RKL F +KP
Sbjct: 4 SNNAEYQRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTG-RHFHVYLKPD-- 60
Query: 63 SAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEI 122
+ L++ GIT E + PE+++V ++ + G HN FD + FA++
Sbjct: 61 REIQLEAIEVHGITDEFLRDKPEYKQVHEEFLDFIKGAELVAHNA-PFDVGFMDYEFAKL 119
Query: 123 GKPAPVPVG---MIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
G + D+L + F + N+ + L +G+ HR+L ++ E+L
Sbjct: 120 GGSVIKTTDFCKVTDTLAMAKRIFPGKRNNLDI--LCERYGI-DNSHRTLHGALLDAEIL 176
Query: 180 KHCATVLFLESSLPNTFNSNLQSSLTVTTRSRSNGKLPC----REETSRKSPPI 229
A V L + Q+SL + ++++G+L R + RK+ +
Sbjct: 177 ---ADVYLLMTG--------GQTSLQFSASTQNSGELNAESLKRARSERKALKV 219
>gi|229522180|ref|ZP_04411597.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
gi|419830683|ref|ZP_14354168.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-1A2]
gi|419834366|ref|ZP_14357821.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-61A2]
gi|419837941|ref|ZP_14361379.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-46B1]
gi|421344651|ref|ZP_15795054.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-43B1]
gi|421354933|ref|ZP_15805265.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-45]
gi|422918072|ref|ZP_16952390.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-02A1]
gi|423735898|ref|ZP_17709090.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-41B1]
gi|423822974|ref|ZP_17716984.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-55C2]
gi|423856939|ref|ZP_17720791.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-59A1]
gi|423883567|ref|ZP_17724378.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-60A1]
gi|423998497|ref|ZP_17741749.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-02C1]
gi|424010236|ref|ZP_17753170.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-44C1]
gi|424017394|ref|ZP_17757223.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-55B2]
gi|424020319|ref|ZP_17760102.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-59B1]
gi|424625693|ref|ZP_18064154.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-50A1]
gi|424630180|ref|ZP_18068464.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-51A1]
gi|424634224|ref|ZP_18072324.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-52A1]
gi|424637302|ref|ZP_18075310.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-55A1]
gi|424641209|ref|ZP_18079092.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-56A1]
gi|424649277|ref|ZP_18086940.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-57A1]
gi|443528195|ref|ZP_21094239.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-78A1]
gi|229341105|gb|EEO06110.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
gi|341636954|gb|EGS61648.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-02A1]
gi|395940731|gb|EJH51412.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-43B1]
gi|395954058|gb|EJH64671.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-45]
gi|408011634|gb|EKG49441.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-50A1]
gi|408017686|gb|EKG55173.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-52A1]
gi|408022829|gb|EKG60020.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-56A1]
gi|408023090|gb|EKG60270.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-55A1]
gi|408032095|gb|EKG68691.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-57A1]
gi|408054267|gb|EKG89251.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-51A1]
gi|408620456|gb|EKK93468.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-1A2]
gi|408629324|gb|EKL02023.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-41B1]
gi|408634950|gb|EKL07185.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-55C2]
gi|408640286|gb|EKL12082.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-59A1]
gi|408640633|gb|EKL12421.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-60A1]
gi|408649188|gb|EKL20505.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-61A2]
gi|408852396|gb|EKL92224.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-02C1]
gi|408856489|gb|EKL96184.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-46B1]
gi|408859543|gb|EKL99200.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-55B2]
gi|408863266|gb|EKM02756.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-44C1]
gi|408866896|gb|EKM06267.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-59B1]
gi|443453453|gb|ELT17276.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-78A1]
Length = 247
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 103/235 (43%), Gaps = 31/235 (13%)
Query: 7 SQAAGTAEIVFFDLETTVPRRAGQRFW----VLEFGAIIVCPRKLVELESFSTLIKPKDL 62
S A IV D ETT R G + ++E GA+ + RKL F +KP
Sbjct: 4 SNNAEYQRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTG-RHFHVYLKPD-- 60
Query: 63 SAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAE- 121
+ L++ GIT E ++ PE+++V ++ + G HN FD + FA+
Sbjct: 61 RDIQLEAIEVHGITDEFLKDKPEYKDVHEEFLDFIKGAELVAHNA-PFDVGFMDYEFAKL 119
Query: 122 ---IGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEV 178
IGK + + D+L + F + N+ + L +G+ HR+L ++ E+
Sbjct: 120 GGAIGKTSDF-CKVTDTLAMAKRIFPGKRNNLDI--LCERYGI-DNSHRTLHGALLDAEI 175
Query: 179 LKHCATVLFLESSLPNTFNSNLQSSLTVTTRSRSNGKLPC----REETSRKSPPI 229
L A V L + Q+SL ++ ++++G+L R + RK+ +
Sbjct: 176 L---ADVYLLMTG--------GQTSLQFSSVTQNSGELSAESLKRARSERKALKV 219
>gi|427439084|ref|ZP_18923826.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus lolii
NGRI 0510Q]
gi|425788462|dbj|GAC44614.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus lolii
NGRI 0510Q]
Length = 927
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 51 ESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRF 110
E++ T I P+ + + SR GIT + V AP+F +VADKI+ L G V+ HN+ F
Sbjct: 39 ETYQTKINPQ--MTIPKRISRLTGITDQQVRQAPKFADVADKIYQKLAGTVFVAHNV-NF 95
Query: 111 DCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLD 170
D + G P + + ID++ + F R G ++ L +Y + S D
Sbjct: 96 DFPFLNRELVRSGYPE-LDLKAIDTVTLSQVLFSRTRG-YRLRDLTNYLHIEHDDPHSAD 153
>gi|315443891|ref|YP_004076770.1| exonuclease, DNA polymerase III subunit epsilon family
[Mycobacterium gilvum Spyr1]
gi|315262194|gb|ADT98935.1| exonuclease, DNA polymerase III, epsilon subunit family
[Mycobacterium gilvum Spyr1]
Length = 617
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 72/173 (41%), Gaps = 19/173 (10%)
Query: 15 IVFFDLETTVPRRAGQRF-WVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
V DLETT R +G R + E GA+ V R L F+TL+ P A+ +
Sbjct: 22 FVVVDLETTGGRASGDRHDAITEIGAVKV--RGGEVLGEFATLVDPG--RAIPPQIVALT 77
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP E V G V HN FD ++ A P P P +
Sbjct: 78 GITSAMVYDAPRIESVLPSFLEFCRGAVLVAHNA-GFDMGFLRAAAERNQVPWPKPPVLC 136
Query: 134 DSLGVLTEKFGRR------AGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVL 179
T RR A ++K++ LA FG HR+LDD R ++VL
Sbjct: 137 ------TVALARRVLTRDEAPSVKLSALARLFGASTTPTHRALDDARATVDVL 183
>gi|310287853|ref|YP_003939111.1| DNA polymerase III subunit alpha [Bifidobacterium bifidum S17]
gi|309251789|gb|ADO53537.1| DNA polymerase III alpha subunit [Bifidobacterium bifidum S17]
Length = 180
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 17/172 (9%)
Query: 2 DGFIPSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKP-K 60
DG +P + V DLETT + R ++EFGA+ V RK V+ ++ L+ P +
Sbjct: 4 DGTLPD------DYVVLDLETT--GVSWYRDTIIEFGAVKVVDRKPVD--TYQQLVNPMR 53
Query: 61 DLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFA 120
+L+ + + GIT + +E AP + V GHNI RFD I A
Sbjct: 54 NLNPFITQLT---GITPDMLEPAPTLDTVLPDFLRWCGDDAMIGHNIMRFDIKFIDLAAQ 110
Query: 121 EIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDD 171
I A VP +ID+L ++ + ++ L F + ++HR+L D
Sbjct: 111 RILHHA-VPNRIIDTLQ-MSRSMYPQYNRHRLVDLIQRFDIADVEEHRALSD 160
>gi|254489685|ref|ZP_05102881.1| exonuclease family [Methylophaga thiooxidans DMS010]
gi|224465094|gb|EEF81347.1| exonuclease family [Methylophaga thiooxydans DMS010]
Length = 488
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+V D ETT R + R + E I V +V+ + TL+ P L + +R G
Sbjct: 11 MVILDCETTGGRASRDR--LTEIALIEVEDGHVVK--RWQTLLNP--LRPIPPWITRLTG 64
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
IT V AP F+E+AD++F+ L+G+V HN RFD + ++++F G
Sbjct: 65 ITDATVADAPTFDEIADELFACLDGKVIVAHNA-RFDYSFLRQSFQRCG 112
>gi|393763994|ref|ZP_10352607.1| DNA polymerase III subunit epsilon [Alishewanella agri BL06]
gi|392605308|gb|EIW88206.1| DNA polymerase III subunit epsilon [Alishewanella agri BL06]
Length = 749
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 77/178 (43%), Gaps = 35/178 (19%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V D+ETT + R V+E GA+ V ++ L++FSTL+ P + SR GI
Sbjct: 585 VVLDVETTGGKAGTDR--VIEIGAVKVQAGEV--LDTFSTLLNPG--RTIPSFISRLTGI 638
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFA--EIGKPAPVPVGMI 133
+ V AP F ++A K+ L G V+ HN +FD I+ FA +I P ++
Sbjct: 639 SNAMVADAPTFTDIATKLADFLQGAVFVAHNA-KFDYGFIRAEFARCDITFDMPQLCTVV 697
Query: 134 D-----------SLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLK 180
+ SLG L E+F N HR+L D E+LK
Sbjct: 698 NMRRYYPGLASYSLGKLCEEFEINLNN---------------HHRALADATATAELLK 740
>gi|145223545|ref|YP_001134223.1| hypothetical protein Mflv_2958 [Mycobacterium gilvum PYR-GCK]
gi|145216031|gb|ABP45435.1| DNA polymerase III, epsilon subunit [Mycobacterium gilvum PYR-GCK]
Length = 617
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 72/173 (41%), Gaps = 19/173 (10%)
Query: 15 IVFFDLETTVPRRAGQRF-WVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
V DLETT R +G R + E GA+ V R L F+TL+ P A+ +
Sbjct: 22 FVVVDLETTGGRASGDRHDAITEIGAVKV--RGGEVLGEFATLVDPG--RAIPPQIVALT 77
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP E V G V HN FD ++ A P P P +
Sbjct: 78 GITSAMVYDAPRIESVLPSFLEFCRGAVLVAHNA-GFDMGFLRAAAERNQVPWPKPPVLC 136
Query: 134 DSLGVLTEKFGRR------AGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVL 179
T RR A ++K++ LA FG HR+LDD R ++VL
Sbjct: 137 ------TVALARRVLTRDEAPSVKLSALARLFGASTTPTHRALDDARATVDVL 183
>gi|206603443|gb|EDZ39923.1| DNA polymerase III, epsilon subunit [Leptospirillum sp. Group II
'5-way CG']
Length = 265
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 88/190 (46%), Gaps = 19/190 (10%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+I F D+ETT R R ++E G KL L STLIK D+ V S+ +
Sbjct: 2 KITFLDVETTGLLR-DSRARIIELGFSTWENGKL--LRKNSTLIKSVDV--VPDNISKIN 56
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM- 132
GIT E ++ AP FE+V I G + HN+ FD + + +P+G
Sbjct: 57 GITTEMLKDAPGFEDVWKSIKEDFQGSILVAHNL-AFDVGMVNRELILANR---IPLGNM 112
Query: 133 -IDSLGVLTEKFGRRAGNMKMATLASYFG-LGQQKHRSLDDVRMNLEVLKHCATVLFLES 190
ID+L L+ K + ++ +A + G L + HR++ D LE L+ + L
Sbjct: 113 GIDTLP-LSRKMLPELSSYRLGEIAKHMGILNESPHRAMGD----LETLEKILSNLL--E 165
Query: 191 SLPNTFNSNL 200
SLP TF+ +
Sbjct: 166 SLPGTFDEGV 175
>gi|163941216|ref|YP_001646100.1| DNA polymerase III subunit epsilon [Bacillus weihenstephanensis
KBAB4]
gi|163863413|gb|ABY44472.1| DNA polymerase III, epsilon subunit [Bacillus weihenstephanensis
KBAB4]
Length = 315
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ ++ + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYHNHELVD--QFVSYVNPE--RSIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ +V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTKVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNNVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA V
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAV 171
>gi|423518237|ref|ZP_17494718.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuA2-4]
gi|401161598|gb|EJQ68962.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuA2-4]
Length = 315
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ ++ + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYHNHELVD--QFVSYVNPE--RSIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ +V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTKVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNNVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA V
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAV 171
>gi|307545281|ref|YP_003897760.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581]
gi|307217305|emb|CBV42575.1| DNA polymerase III, epsilon subunit [Halomonas elongata DSM 2581]
Length = 255
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 98/223 (43%), Gaps = 28/223 (12%)
Query: 16 VFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKP-KDLSAVALKSSRCD 73
+ D ETT + R G R +E GA+ + R+L ++ I P +D+ A A++
Sbjct: 4 IILDTETTGIDPREGHRL--IEIGAVEMVNRRLTG-NTYHQYINPERDIEAEAVE---VH 57
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEI----GKPAPVP 129
GIT E V P F EVAD ++ + G HN FD I FA + G P P
Sbjct: 58 GITNEKVADEPVFAEVADAFWAFIKGAELVIHNA-PFDVGFIDHEFARLNEARGGPVLGP 116
Query: 130 VG----MIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC--- 182
V ++D+L + +K + N+ L + + Q HR L ++ E+L
Sbjct: 117 VAEHCRILDTLQLARDKHPGQRNNLD--ALCKRYEI-QNGHRVLHGALLDAEILADVYLA 173
Query: 183 ----ATVLFLESSL-PNTFNSNLQSSLTVTTRSRSNGKLPCRE 220
T L L++S +T ++ L + S S G+L R+
Sbjct: 174 MTGGQTALSLDASAGDDTEQADNGGGLRIRRLSLSPGQLRVRQ 216
>gi|341819830|emb|CCC56034.1| DNA polymerase III, epsilon subunit [Weissella thailandensis
fsh4-2]
Length = 177
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 80/176 (45%), Gaps = 23/176 (13%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V D ET + +R+ + G +V KLV+ F TLIKP S +++R GI
Sbjct: 4 VAMDFETA----SAKRYSAVSLGLAVVRDNKLVD--EFYTLIKPD--SFFDKRNTRIHGI 55
Query: 76 TREAVESAPEFEEVADKI--FSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
T V AP F EV +++ F N V A HN FD ++E G +G+
Sbjct: 56 TEADVLDAPTFPEVWEQVQQFYTPNQLVIA-HN-ASFDNGVLRETLTHYG------IGVP 107
Query: 134 DSLGVLTEKFGRRAG----NMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHCAT 184
L + T + R+ N K+ T+++ G+ Q H +LDD E+L AT
Sbjct: 108 HYLSLDTVRTSRKLYPELPNHKLNTVSAALGIDLQHHHNALDDTVAAAEILVRQAT 163
>gi|359421865|ref|ZP_09213770.1| DNA polymerase III epsilon subunit [Gordonia araii NBRC 100433]
gi|358242199|dbj|GAB11839.1| DNA polymerase III epsilon subunit [Gordonia araii NBRC 100433]
Length = 620
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 78/176 (44%), Gaps = 14/176 (7%)
Query: 8 QAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVAL 67
Q+ T V DLETT + +R + E GA+ VC ++V F+TL+ P A+
Sbjct: 59 QSLATTPFVVLDLETTGG--SAERDAITEIGAVKVCGGEVVG--EFATLVDPD--RAIPD 112
Query: 68 KSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAP 127
+ GIT V +AP EV G V HN RFD + A +G
Sbjct: 113 EIVALTGITETMVSTAPRIGEVLASFLEFARGCVLVAHN-SRFDLGFLSAAARRLGLDWH 171
Query: 128 VPVGMID---SLGVLTEKFGRRAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVL 179
P + + VLT + A ++++A LA F HR+LDD R ++VL
Sbjct: 172 FPATLCTVALARRVLTRE---EAPSVRLADLAILFRASTTPTHRALDDARATVDVL 224
>gi|238060312|ref|ZP_04605021.1| hypothetical protein MCAG_01278 [Micromonospora sp. ATCC 39149]
gi|237882123|gb|EEP70951.1| hypothetical protein MCAG_01278 [Micromonospora sp. ATCC 39149]
Length = 604
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 80/187 (42%), Gaps = 24/187 (12%)
Query: 7 SQAAGTA----------EIVFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFS 54
QAAGT V DLETT P G + E GA+ V R EL +
Sbjct: 34 GQAAGTGVDPALPLYATTFVVVDLETTGGAPDGGG----ITEIGAVKV--RGGEELGVLA 87
Query: 55 TLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCAR 114
TL+ P + + GIT+ + AP E+V + V HN +D
Sbjct: 88 TLVNPG--VPIPPFITVLTGITQAMLVPAPPIEQVLPSFLEFVADAVLVAHNA-PYDVGF 144
Query: 115 IKEAFAEIGKPAPVPVGMIDSLGVLTEKFGR-RAGNMKMATLASYFGLGQQ-KHRSLDDV 172
+K A A G P P ++D+ + GR N K+ TLASYF + HR+LDD
Sbjct: 145 LKAACARHGYRWPNPR-VLDTAALARRVLGRDEVPNRKLGTLASYFRTATRPTHRALDDA 203
Query: 173 RMNLEVL 179
+ ++VL
Sbjct: 204 KATVDVL 210
>gi|227524493|ref|ZP_03954542.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
hilgardii ATCC 8290]
gi|227088363|gb|EEI23675.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
hilgardii ATCC 8290]
Length = 945
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 69/128 (53%), Gaps = 7/128 (5%)
Query: 34 VLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKI 93
+++F +V K+VE ++ + I P+ V + + GIT E ++ AP F++V+ K+
Sbjct: 25 IIQFSCTLVAHGKIVE--TYVSDINPQ--REVPERIIQLTGITPERLKKAPTFDQVSSKL 80
Query: 94 FSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMA 153
+ +L+G V+ HN+ FD + F +G P + + ID++ L++ + ++
Sbjct: 81 YKLLSGTVFVAHNV-NFDFPFLNGEFQRVGYPE-LDIEAIDTV-TLSQILLPTLSSYRLQ 137
Query: 154 TLASYFGL 161
L++YF +
Sbjct: 138 DLSTYFNI 145
>gi|227513350|ref|ZP_03943399.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
buchneri ATCC 11577]
gi|227083223|gb|EEI18535.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
buchneri ATCC 11577]
Length = 945
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 69/128 (53%), Gaps = 7/128 (5%)
Query: 34 VLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKI 93
+++F +V K+VE ++ + I P+ V + + GIT E ++ AP F++V+ K+
Sbjct: 25 IIQFSCTLVAHGKIVE--TYVSDINPQ--REVPERIIQLTGITPERLKKAPTFDQVSSKL 80
Query: 94 FSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMA 153
+ +L+G V+ HN+ FD + F +G P + + ID++ L++ + ++
Sbjct: 81 YKLLSGTVFVAHNV-NFDFPFLNGEFQRVGYPE-LDIEAIDTV-TLSQILLPTLSSYRLQ 137
Query: 154 TLASYFGL 161
L++YF +
Sbjct: 138 DLSTYFNI 145
>gi|256375516|ref|YP_003099176.1| hypothetical protein Amir_1378 [Actinosynnema mirum DSM 43827]
gi|255919819|gb|ACU35330.1| DNA polymerase III, epsilon subunit [Actinosynnema mirum DSM 43827]
Length = 578
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 74/172 (43%), Gaps = 20/172 (11%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
V FDLETT PR A + E GA+ V +++ F TL+ P+ + + G
Sbjct: 31 FVVFDLETTGPRAAEDG--ITEIGAVKVRGGRVIG--EFGTLVDPE--RGIPPQIVALTG 84
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
IT+ V AP V G V HN FD +K A G P P
Sbjct: 85 ITQNMVTGAPVLASVLPAFLEFAEGAVLVAHN-SGFDVGFMKAACERHGYAWPKPP---- 139
Query: 135 SLGVLTEKFGRR------AGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVL 179
V T K RR A + K++ L++ FG+ + HR+L D R +EVL
Sbjct: 140 --VVCTVKLARRVLSREEAPSCKLSALSALFGVPEAPNHRALVDARATVEVL 189
>gi|419619383|ref|ZP_14152851.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 51494]
gi|419632770|ref|ZP_14165223.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 23269]
gi|419646017|ref|ZP_14177495.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 53161]
gi|419671208|ref|ZP_14200881.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1997-14]
gi|419673238|ref|ZP_14202713.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 51037]
gi|419679424|ref|ZP_14208428.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 87459]
gi|419695170|ref|ZP_14223068.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 23210]
gi|380602662|gb|EIB22913.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 51494]
gi|380613675|gb|EIB33145.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 23269]
gi|380624426|gb|EIB43078.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 53161]
gi|380649722|gb|EIB66410.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1997-14]
gi|380654130|gb|EIB70506.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 51037]
gi|380657431|gb|EIB73503.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 87459]
gi|380679560|gb|EIB94402.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 23210]
Length = 256
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 18/167 (10%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+E+T G+ +LE GA+ + K E+ F + +K K++ + GIT E
Sbjct: 76 DIESTGGVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPE---NITELTGITYE 127
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
VE+AP +V L ++ HN+R FD + I +A E G G++ + +
Sbjct: 128 MVENAPSLTKVLSDFRLFLKDSIFVAHNVR-FDYSFISKALNECG------FGILLNRRI 180
Query: 139 LTEKFGR---RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
T +F + + K+ L + G+ HR+LDD E+LK+C
Sbjct: 181 CTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEILKYC 227
>gi|15614254|ref|NP_242557.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus halodurans C-125]
gi|10174308|dbj|BAB05410.1| ATP-dependent DNA helicase [Bacillus halodurans C-125]
Length = 942
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 11/162 (6%)
Query: 16 VFFDLETTVPRRA-GQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
V D+ETT A G R ++E GA+++ + VE SF TL+ P+ ++ G
Sbjct: 6 VVIDIETTGQSVAQGDR--IIEIGAVVIEDEEAVE--SFCTLVNPE--RSIPPFIEELTG 59
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
I+ E V+ AP F + ++ S+L G V+ HN+ FD + +++ G P+ V +ID
Sbjct: 60 ISDEMVKGAPTFHQCIPELMSMLEGGVFVAHNV-HFDLSFLQKLLEHEGY-GPLLVPIID 117
Query: 135 SLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMN 175
++ L+ + K++ L GL + HR+ D ++
Sbjct: 118 TVE-LSRILLPTEESYKLSALTEQLGLEHENPHRADSDAKVT 158
>gi|407701854|ref|YP_006826641.1| DNA polymerase III subunit epsilon [Alteromonas macleodii str.
'Black Sea 11']
gi|407251001|gb|AFT80186.1| DNA polymerase III subunit epsilon [Alteromonas macleodii str.
'Black Sea 11']
Length = 715
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 19/170 (11%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V D+ETT + R + E G + + K E++ F TL+ P+ + +R GI
Sbjct: 544 VVVDIETTGGNSSYNR--ITEIGMVKLVGGK--EVDRFQTLLNPQ--RRIPSNITRLTGI 597
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
+ + V AP F EVA+ + + V+ HN+ FD IK+ FA + + P
Sbjct: 598 SDDMVADAPLFAEVAEHVANFTEDAVFVAHNV-NFDYGFIKQEFARLEQTFRRP------ 650
Query: 136 LGVLTEKFGRRAG----NMKMATLASYFGLG-QQKHRSLDDVRMNLEVLK 180
+ T + RR + +A L +F + +Q HR+L D + E+LK
Sbjct: 651 -KMCTVREMRRTYPGLPSYSLANLTRHFHIDMEQHHRALSDAKAAAELLK 699
>gi|384187620|ref|YP_005573516.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
chinensis CT-43]
gi|410675939|ref|YP_006928310.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
gi|452199996|ref|YP_007480077.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|326941329|gb|AEA17225.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
chinensis CT-43]
gi|409175068|gb|AFV19373.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
gi|452105389|gb|AGG02329.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 315
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEPTN-KVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H +LDD V + CA +
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNALDDCITCAAVYQKCAAI 171
>gi|307261758|ref|ZP_07543424.1| hypothetical protein appser12_13170 [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306868576|gb|EFN00387.1| hypothetical protein appser12_13170 [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
Length = 248
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 19/173 (10%)
Query: 16 VFFDLETTV-----PRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKP-KDLSAVALKS 69
+ D ETT P + G ++E GA+ V R+L +F IKP +++ A+K
Sbjct: 1 MVLDTETTGMSFSGPPQIGHN--IIEIGAVEVINRRLTG-RTFHVYIKPPREVDEEAIK- 56
Query: 70 SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVP 129
GIT E ++ P F EVAD+ + G HN FD A + + F+ +G P P
Sbjct: 57 --VHGITNEFLQDKPVFAEVADEFIEFIKGAELIIHN-APFDVAFMDQEFSYLGNPPPKT 113
Query: 130 VGM---IDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
M DSL V + + + N+ L G+ K R L ++ E+L
Sbjct: 114 AEMCSVTDSLAVARKMYPGKRNNLD--ALCDRLGIDNSK-RVLHGALLDAEIL 163
>gi|256847331|ref|ZP_05552777.1| helicase [Lactobacillus coleohominis 101-4-CHN]
gi|256715995|gb|EEU30970.1| helicase [Lactobacillus coleohominis 101-4-CHN]
Length = 950
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 10/144 (6%)
Query: 19 DLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITR 77
DLETT ++G R +++ G +++ K++ F T I P L + + GIT
Sbjct: 20 DLETTGTSVKSGDR--IIQVGLVMIQDGKIIN--QFETRINP--LMKIPRSVQQLTGITD 73
Query: 78 EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLG 137
+ V AP E++A + S+L+G ++ HN+ FD I +G+ P+ + ID++
Sbjct: 74 KDVSKAPLLEDIAPTLESLLSGTIFVAHNV-NFDFPFINHELTRVGRD-PLRISAIDTV- 130
Query: 138 VLTEKFGRRAGNMKMATLASYFGL 161
L++ A + ++ L SY +
Sbjct: 131 TLSQILMPTAKSYRLRDLTSYLHI 154
>gi|392955788|ref|ZP_10321318.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus macauensis ZFHKF-1]
gi|391878030|gb|EIT86620.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus macauensis ZFHKF-1]
Length = 936
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 94/196 (47%), Gaps = 17/196 (8%)
Query: 16 VFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
V D+ETT P + G R +++ GA++V ++V+ FS+ + P+ A+ +
Sbjct: 6 VVIDVETTGNAPAK-GDR--IIQIGAVVVENHEIVQ--RFSSFVNPE--VAIPPFIEQLT 58
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GI V+ AP FEEVA + ++L G + HN+ FD ++E F G A ++
Sbjct: 59 GIDDSMVQDAPLFEEVAPTLLTMLEGAYFVAHNV-LFDLNFLQEEFQRCGY-ATFQGPLL 116
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMN----LEVLKHCATVLFL 188
D++ L +A ++ LA Y G+ + H++ D + + +++ T+ +
Sbjct: 117 DTVE-LARLLFLQADGYQLNQLADYLGIVHENPHQADSDAEVTAHLLISLIQKLVTLPLV 175
Query: 189 ESSLPNTFNSNLQSSL 204
F + +QSSL
Sbjct: 176 TLQRLQPFLTKMQSSL 191
>gi|227510342|ref|ZP_03940391.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
brevis subsp. gravesensis ATCC 27305]
gi|227189994|gb|EEI70061.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
brevis subsp. gravesensis ATCC 27305]
Length = 945
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 69/128 (53%), Gaps = 7/128 (5%)
Query: 34 VLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKI 93
+++F +V K+VE ++ + I P+ V + + GIT E ++ AP F++V+ K+
Sbjct: 25 IIQFSCTLVAHGKIVE--TYVSDINPQ--REVPERIIQLTGITPERLKKAPTFDQVSSKL 80
Query: 94 FSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMA 153
+ +L+G V+ HN+ FD + F +G P + + ID++ L++ + ++
Sbjct: 81 YKLLSGTVFVAHNV-NFDFPFLNGEFQRVGYPE-LDIEAIDTV-TLSQILLPTLSSYRLQ 137
Query: 154 TLASYFGL 161
L++YF +
Sbjct: 138 DLSAYFNI 145
>gi|218904738|ref|YP_002452572.1| DNA polymerase III subunit epsilon [Bacillus cereus AH820]
gi|218538798|gb|ACK91196.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
AH820]
Length = 315
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + PK + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPK--RPIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA++
Sbjct: 121 DTV-FLAKKYMKHAPNYKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASI 171
>gi|15642231|ref|NP_231864.1| DNA polymerase III subunit epsilon [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121586228|ref|ZP_01676018.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 2740-80]
gi|121726541|ref|ZP_01679790.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V52]
gi|147674786|ref|YP_001217749.1| DNA polymerase III subunit epsilon [Vibrio cholerae O395]
gi|153213799|ref|ZP_01949007.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 1587]
gi|153817083|ref|ZP_01969750.1| DNA polymerase III, epsilon subunit [Vibrio cholerae NCTC 8457]
gi|153820811|ref|ZP_01973478.1| DNA polymerase III, epsilon subunit [Vibrio cholerae B33]
gi|227082357|ref|YP_002810908.1| DNA polymerase III subunit epsilon [Vibrio cholerae M66-2]
gi|227118679|ref|YP_002820575.1| DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
gi|229507692|ref|ZP_04397197.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286]
gi|229512113|ref|ZP_04401592.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33]
gi|229519248|ref|ZP_04408691.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9]
gi|229607196|ref|YP_002877844.1| DNA polymerase III subunit epsilon [Vibrio cholerae MJ-1236]
gi|254849364|ref|ZP_05238714.1| DNA polymerase III [Vibrio cholerae MO10]
gi|255747069|ref|ZP_05421014.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101]
gi|262161386|ref|ZP_06030496.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1]
gi|262167744|ref|ZP_06035446.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27]
gi|298500392|ref|ZP_07010197.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MAK 757]
gi|360036110|ref|YP_004937873.1| DNA polymerase III subunit epsilon [Vibrio cholerae O1 str.
2010EL-1786]
gi|379742038|ref|YP_005334007.1| DNA polymerase III subunit epsilon [Vibrio cholerae IEC224]
gi|417814261|ref|ZP_12460914.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-49A2]
gi|417817998|ref|ZP_12464627.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HCUF01]
gi|418335243|ref|ZP_12944154.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-06A1]
gi|418338852|ref|ZP_12947746.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-23A1]
gi|418346776|ref|ZP_12951534.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-28A1]
gi|418350538|ref|ZP_12955269.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-43A1]
gi|418355397|ref|ZP_12958116.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-61A1]
gi|419827192|ref|ZP_14350691.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1033(6)]
gi|421318306|ref|ZP_15768874.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1032(5)]
gi|421321990|ref|ZP_15772543.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1038(11)]
gi|421325792|ref|ZP_15776316.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1041(14)]
gi|421329450|ref|ZP_15779960.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1042(15)]
gi|421333406|ref|ZP_15783883.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1046(19)]
gi|421336948|ref|ZP_15787409.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1048(21)]
gi|421340376|ref|ZP_15790808.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-20A2]
gi|421347824|ref|ZP_15798201.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-46A1]
gi|422897331|ref|ZP_16934775.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-40A1]
gi|422903529|ref|ZP_16938499.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-48A1]
gi|422907414|ref|ZP_16942212.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-70A1]
gi|422914258|ref|ZP_16948763.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HFU-02]
gi|422926462|ref|ZP_16959475.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-38A1]
gi|423145784|ref|ZP_17133378.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-19A1]
gi|423150460|ref|ZP_17137774.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-21A1]
gi|423154279|ref|ZP_17141460.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-22A1]
gi|423157362|ref|ZP_17144455.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-32A1]
gi|423160933|ref|ZP_17147873.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-33A2]
gi|423165760|ref|ZP_17152484.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-48B2]
gi|423731780|ref|ZP_17705083.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-17A1]
gi|423769065|ref|ZP_17713203.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-50A2]
gi|423895927|ref|ZP_17727406.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-62A1]
gi|423931459|ref|ZP_17731799.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-77A1]
gi|424003212|ref|ZP_17746287.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-17A2]
gi|424007003|ref|ZP_17749973.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-37A1]
gi|424024983|ref|ZP_17764633.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-62B1]
gi|424027869|ref|ZP_17767471.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-69A1]
gi|424587149|ref|ZP_18026727.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1030(3)]
gi|424591940|ref|ZP_18031364.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1037(10)]
gi|424595800|ref|ZP_18035119.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1040(13)]
gi|424599714|ref|ZP_18038892.1| DNA polymerase III, epsilon subunit [Vibrio Cholerae CP1044(17)]
gi|424602475|ref|ZP_18041615.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1047(20)]
gi|424607407|ref|ZP_18046348.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1050(23)]
gi|424611226|ref|ZP_18050065.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-39A1]
gi|424614041|ref|ZP_18052826.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-41A1]
gi|424618015|ref|ZP_18056686.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-42A1]
gi|424622798|ref|ZP_18061303.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-47A1]
gi|424645762|ref|ZP_18083497.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-56A2]
gi|424653531|ref|ZP_18090911.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-57A2]
gi|440710473|ref|ZP_20891121.1| DNA polymerase III epsilon subunit [Vibrio cholerae 4260B]
gi|443504580|ref|ZP_21071536.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-64A1]
gi|443508481|ref|ZP_21075242.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-65A1]
gi|443512325|ref|ZP_21078960.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-67A1]
gi|443515879|ref|ZP_21082389.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-68A1]
gi|443519673|ref|ZP_21086066.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-71A1]
gi|443524564|ref|ZP_21090774.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-72A2]
gi|443532158|ref|ZP_21098172.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-7A1]
gi|443535966|ref|ZP_21101837.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-80A1]
gi|443539499|ref|ZP_21105353.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-81A1]
gi|449055309|ref|ZP_21733977.1| DNA polymerase III epsilon subunit [Vibrio cholerae O1 str. Inaba
G4222]
gi|9656792|gb|AAF95377.1| DNA polymerase III, epsilon subunit [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121549494|gb|EAX59520.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 2740-80]
gi|121630994|gb|EAX63373.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V52]
gi|124115723|gb|EAY34543.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 1587]
gi|126512351|gb|EAZ74945.1| DNA polymerase III, epsilon subunit [Vibrio cholerae NCTC 8457]
gi|126521603|gb|EAZ78826.1| DNA polymerase III, epsilon subunit [Vibrio cholerae B33]
gi|146316669|gb|ABQ21208.1| DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
gi|227010245|gb|ACP06457.1| DNA polymerase III, epsilon subunit [Vibrio cholerae M66-2]
gi|227014129|gb|ACP10339.1| DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
gi|229343937|gb|EEO08912.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9]
gi|229352078|gb|EEO17019.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33]
gi|229355197|gb|EEO20118.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286]
gi|229369851|gb|ACQ60274.1| DNA polymerase III epsilon subunit [Vibrio cholerae MJ-1236]
gi|254845069|gb|EET23483.1| DNA polymerase III [Vibrio cholerae MO10]
gi|255735471|gb|EET90871.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101]
gi|262023809|gb|EEY42508.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27]
gi|262028697|gb|EEY47351.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1]
gi|297541085|gb|EFH77139.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MAK 757]
gi|340036747|gb|EGQ97723.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-49A2]
gi|340037721|gb|EGQ98696.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HCUF01]
gi|341620469|gb|EGS46240.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-48A1]
gi|341620605|gb|EGS46372.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-70A1]
gi|341621214|gb|EGS46961.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-40A1]
gi|341636500|gb|EGS61195.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HFU-02]
gi|341645852|gb|EGS69976.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-38A1]
gi|356416619|gb|EHH70244.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-06A1]
gi|356417782|gb|EHH71395.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-21A1]
gi|356422622|gb|EHH76096.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-19A1]
gi|356427971|gb|EHH81202.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-22A1]
gi|356430494|gb|EHH83703.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-23A1]
gi|356431760|gb|EHH84960.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-28A1]
gi|356439252|gb|EHH92239.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-32A1]
gi|356444210|gb|EHH97022.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-33A2]
gi|356445034|gb|EHH97843.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-43A1]
gi|356450261|gb|EHI02991.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-48B2]
gi|356451895|gb|EHI04574.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-61A1]
gi|356647264|gb|AET27319.1| DNA polymerase III subunit epsilon [Vibrio cholerae O1 str.
2010EL-1786]
gi|378795548|gb|AFC59019.1| DNA polymerase III subunit epsilon [Vibrio cholerae IEC224]
gi|395916564|gb|EJH27394.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1032(5)]
gi|395917630|gb|EJH28458.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1041(14)]
gi|395918984|gb|EJH29808.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1038(11)]
gi|395927984|gb|EJH38747.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1042(15)]
gi|395928808|gb|EJH39561.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1046(19)]
gi|395932047|gb|EJH42791.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1048(21)]
gi|395939659|gb|EJH50341.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-20A2]
gi|395942403|gb|EJH53079.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-46A1]
gi|395958300|gb|EJH68796.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-56A2]
gi|395958821|gb|EJH69285.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-57A2]
gi|395961491|gb|EJH71815.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-42A1]
gi|395970446|gb|EJH80211.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-47A1]
gi|395972497|gb|EJH82087.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1030(3)]
gi|395975153|gb|EJH84650.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1047(20)]
gi|408006577|gb|EKG44715.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-39A1]
gi|408011964|gb|EKG49762.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-41A1]
gi|408030118|gb|EKG66795.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1037(10)]
gi|408031358|gb|EKG67988.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1040(13)]
gi|408041071|gb|EKG77211.1| DNA polymerase III, epsilon subunit [Vibrio Cholerae CP1044(17)]
gi|408042514|gb|EKG78563.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1050(23)]
gi|408607982|gb|EKK81385.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1033(6)]
gi|408622823|gb|EKK95790.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-17A1]
gi|408633342|gb|EKL05703.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-50A2]
gi|408653686|gb|EKL24841.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-77A1]
gi|408654629|gb|EKL25764.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-62A1]
gi|408844857|gb|EKL84980.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-37A1]
gi|408845746|gb|EKL85861.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-17A2]
gi|408869843|gb|EKM09130.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-62B1]
gi|408878492|gb|EKM17493.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-69A1]
gi|439973802|gb|ELP50006.1| DNA polymerase III epsilon subunit [Vibrio cholerae 4260B]
gi|443431051|gb|ELS73605.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-64A1]
gi|443434889|gb|ELS81035.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-65A1]
gi|443438713|gb|ELS88431.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-67A1]
gi|443442816|gb|ELS96119.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-68A1]
gi|443446672|gb|ELT03331.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-71A1]
gi|443449422|gb|ELT09716.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-72A2]
gi|443457548|gb|ELT24945.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-7A1]
gi|443460856|gb|ELT31936.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-80A1]
gi|443465599|gb|ELT40259.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-81A1]
gi|448265351|gb|EMB02586.1| DNA polymerase III epsilon subunit [Vibrio cholerae O1 str. Inaba
G4222]
Length = 247
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 103/235 (43%), Gaps = 31/235 (13%)
Query: 7 SQAAGTAEIVFFDLETTVPRRAGQRFW----VLEFGAIIVCPRKLVELESFSTLIKPKDL 62
S A IV D ETT R G + ++E GA+ + RKL F +KP
Sbjct: 4 SNNAEYQRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTG-RHFHVYLKPD-- 60
Query: 63 SAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAE- 121
+ L++ GIT E ++ PE+++V ++ + G HN FD + FA+
Sbjct: 61 RDIQLEAIEVHGITDEFLKDKPEYKDVHEEFVDFIKGAELVAHNA-PFDVGFMDYEFAKL 119
Query: 122 ---IGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEV 178
IGK + + D+L + F + N+ + L +G+ HR+L ++ E+
Sbjct: 120 GGAIGKTSDF-CKVTDTLAMAKRIFPGKRNNLDI--LCERYGI-DNSHRTLHGALLDAEI 175
Query: 179 LKHCATVLFLESSLPNTFNSNLQSSLTVTTRSRSNGKLPC----REETSRKSPPI 229
L A V L + Q+SL ++ ++++G+L R + RK+ +
Sbjct: 176 L---ADVYLLMTG--------GQTSLQFSSVTQNSGELSAESLKRARSERKALKV 219
>gi|441512147|ref|ZP_20993992.1| DNA polymerase III epsilon subunit [Gordonia amicalis NBRC 100051]
gi|441453114|dbj|GAC51953.1| DNA polymerase III epsilon subunit [Gordonia amicalis NBRC 100051]
Length = 621
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 81/197 (41%), Gaps = 29/197 (14%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+V DLETT AG R + E GA+ + R + F+TL+ P + + G
Sbjct: 50 LVVVDLETTGSDPAGDR--ITEIGAVKI--RGGEVIGEFATLVDPG--RPIPPQIVTLTG 103
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
IT V AP E V G + HN RFD +++ + P
Sbjct: 104 ITTAMVTDAPRIESVLPAFLEFARGAILVAHNA-RFDMGFLRQNALRLHLDWPF------ 156
Query: 135 SLGVLTEKFGRR------AGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL-------- 179
SL + T RR A +K++ LA F + + HR+LDD R +EV
Sbjct: 157 SLSLCTVTMARRILSRDEAPTVKLSALADLFDVSVRPTHRALDDARATVEVFHRLLERVG 216
Query: 180 -KHCATVLFLESSLPNT 195
+ ATV L S LP T
Sbjct: 217 NQGIATVGELTSYLPRT 233
>gi|258627375|ref|ZP_05722159.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM603]
gi|258580413|gb|EEW05378.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM603]
Length = 247
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 98/234 (41%), Gaps = 29/234 (12%)
Query: 7 SQAAGTAEIVFFDLETTVPRRAGQRFW----VLEFGAIIVCPRKLVELESFSTLIKPKDL 62
S A IV D ETT R G + ++E GA+ + RKL F +KP
Sbjct: 4 SNNAEYQRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTG-RHFHVYLKPD-- 60
Query: 63 SAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEI 122
+ L++ GIT E + PE+++V D+ + HN FD + FA++
Sbjct: 61 REIQLEAIEVHGITDEFLRDKPEYKDVHDEFLDFIKDAELVAHNA-PFDVGFMDYEFAKL 119
Query: 123 GKPAPVPVG---MIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
G + D+L + F + N+ + L +G+ HR+L ++ E+L
Sbjct: 120 GGSVVKTTDFCKVTDTLAMAKRIFPGKRNNLDI--LCERYGI-DNSHRTLHGALLDAEIL 176
Query: 180 KHCATVLFLESSLPNTFNSNLQSSLTVTTRSRSNGKLPC----REETSRKSPPI 229
A V L + Q+SL + ++++G+L R + RK+ +
Sbjct: 177 ---ADVYLLMTG--------GQTSLQFSAATQNSGELGAESLKRSRSERKALKV 219
>gi|433650621|ref|YP_007295623.1| exonuclease, DNA polymerase III, epsilon subunit family
[Mycobacterium smegmatis JS623]
gi|433300398|gb|AGB26218.1| exonuclease, DNA polymerase III, epsilon subunit family
[Mycobacterium smegmatis JS623]
Length = 329
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 8/131 (6%)
Query: 51 ESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRF 110
+S TL+ P V + G+T E +E P F +V + +L R HN+ F
Sbjct: 49 QSLYTLLNP----GVDPGPTHVHGLTAEMLEGQPCFGDVVGPLVELLKDRTLVAHNV-GF 103
Query: 111 DCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRSL 169
D + + +G A +PV + LT + N+++ATLAS++G+ Q K H +L
Sbjct: 104 DYSFLAAEAELVG--AELPVDTVMCTVELTRRLELGTENLQLATLASHWGITQIKPHDAL 161
Query: 170 DDVRMNLEVLK 180
DD + ++LK
Sbjct: 162 DDAMVLAQILK 172
>gi|149183101|ref|ZP_01861552.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus sp. SG-1]
gi|148849178|gb|EDL63377.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus sp. SG-1]
Length = 933
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 83/174 (47%), Gaps = 19/174 (10%)
Query: 14 EIVFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKS-- 69
+IV DLETT P++ + +++ A++V +V+ S++T + P + + S
Sbjct: 5 KIVVVDLETTGNSPKKGDK---IIQLAAMVVQGGAVVD--SYTTFVNP----GITIPSFI 55
Query: 70 SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG-KPAPV 128
GI V+ APEF E+A K+ +L+G V+ HN+ +FD ++ E G P
Sbjct: 56 EELTGIHDGMVKDAPEFSEIAPKVLELLDGAVFCAHNV-QFDLGFLQAELEEAGYNPFSG 114
Query: 129 PVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKH 181
P L +T A + K+ L+ F L + H++ D + E+L H
Sbjct: 115 PSFDTVELAKITLP---TADSYKLTELSDRFSLNHSRPHQADSDALVTAELLIH 165
>gi|385840347|ref|YP_005863671.1| DinG family ATP-dependent helicase [Lactobacillus salivarius CECT
5713]
gi|300214468|gb|ADJ78884.1| ATP-dependent helicase, DinG family [Lactobacillus salivarius CECT
5713]
Length = 929
Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 9/162 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT P++ G +++F V K+V FSTLI P + + + GI +
Sbjct: 11 DLETTGPKQDGSD-KIIQFSCDFVQSNKIVN--HFSTLINPG--MPIPAEVKKLTGIKNK 65
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V AP F+EVA I+++L + HN+ FD + + G P + + M+D++
Sbjct: 66 DVRYAPYFDEVAGTIYAMLQNTTFVAHNV-NFDYSFLSSELERAGYPE-LELPMMDTVQ- 122
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDDVRMNLEVL 179
LT+ + ++ ++ Y L H++ D + E+L
Sbjct: 123 LTQIIYPTLVSYRLIDVSKYLQLSHIHPHKADSDTKATAELL 164
>gi|255070749|ref|XP_002507456.1| exonuclease and DNA helicase [Micromonas sp. RCC299]
gi|226522731|gb|ACO68714.1| exonuclease and DNA helicase [Micromonas sp. RCC299]
Length = 1473
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 84/184 (45%), Gaps = 25/184 (13%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+V FDLETT + R ++E A+ V + STL+ P AV G
Sbjct: 295 VVVFDLETTGLNK--DRNRIIEIAAVNVSDPTH---QPMSTLVNPGRF-AVPPPVVALTG 348
Query: 75 ITREAVESAPE----------FEEVADKIFSILNGR--VWAGHNIRRFDCARIKEAFAEI 122
IT A+ SAP F+E D+ G + A HN R+FD ++ + +
Sbjct: 349 IT-NAMVSAPAVPSFQRAAELFQEYIDEARRRCGGASVLLAAHNARQFDAGFLQAEYRRL 407
Query: 123 GKPAPVPVGMIDSLGVLTEKFGRRA---GNMKMATLASYFGL---GQQKHRSLDDVRMNL 176
G+ P +D+L + + + A G+ K+ +LA++FG+ G HR+ D RM
Sbjct: 408 GRELPEDWRFVDTLPLARKTLAKEAVPGGSYKLESLAAHFGVDTAGASAHRAEADARMLG 467
Query: 177 EVLK 180
+VL+
Sbjct: 468 DVLQ 471
>gi|228940696|ref|ZP_04103259.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228973614|ref|ZP_04134196.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228980172|ref|ZP_04140486.1| DNA polymerase III alpha subunit [Bacillus thuringiensis Bt407]
gi|228779530|gb|EEM27783.1| DNA polymerase III alpha subunit [Bacillus thuringiensis Bt407]
gi|228786075|gb|EEM34072.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228818940|gb|EEM65002.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
berliner ATCC 10792]
Length = 324
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 18 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPDRITSLT 71
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 72 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEPTN-KVI 129
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H +LDD V + CA +
Sbjct: 130 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNALDDCITCAAVYQKCAAI 180
>gi|326800820|ref|YP_004318639.1| DNA polymerase III subunit epsilon [Sphingobacterium sp. 21]
gi|326551584|gb|ADZ79969.1| DNA polymerase III, epsilon subunit [Sphingobacterium sp. 21]
Length = 463
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 17/121 (14%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAII-----VCPRKLVELESFSTLIKPKDLSAVALK 68
E D+ETT AG + E I +C R + TL+ P+ + + L
Sbjct: 2 EYAIVDIETTGGHAAGH--GITEIAICIHDGAGICHR-------YETLVNPQ--AHIPLH 50
Query: 69 SSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPV 128
S GI+ E V AP F E+A ++ +L GR++ HN+ FD + IK A G
Sbjct: 51 ISALTGISNEMVADAPTFAEIAATVYQLLEGRIFVAHNV-NFDYSFIKHHLAFCGYSWNA 109
Query: 129 P 129
P
Sbjct: 110 P 110
>gi|365833259|ref|ZP_09374779.1| exonuclease, DNA polymerase III, epsilon subunit [Coprobacillus sp.
3_3_56FAA]
gi|365258347|gb|EHM88355.1| exonuclease, DNA polymerase III, epsilon subunit [Coprobacillus sp.
3_3_56FAA]
Length = 224
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 83/187 (44%), Gaps = 15/187 (8%)
Query: 3 GFIPSQA---AGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTL--- 56
GFI + E V FDLETT + R ++E GAI V K+V+ FSTL
Sbjct: 26 GFIDEETLTIQSIQEYVVFDLETTGFNKKEDR--IIEIGAIKVKNGKVVD--RFSTLCAP 81
Query: 57 IKPKDLSAVALKSSRCDGITR-EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARI 115
IK ++ K + GI + + PE E V + + + ++ HN +FD +
Sbjct: 82 IKAGKQMYISAKITEVTGIKNVDLLNQIPESEAVKNFMCWLGESKISVAHNGAKFDIPFL 141
Query: 116 KEAFAEIG---KPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDV 172
KEA K + M+ S + G N K TLA YFG+ Q HR+++D
Sbjct: 142 KEACKRSNVEFKFTHILDTMLLSKALNYVNNGNIPNN-KQETLARYFGIEYQAHRAVNDC 200
Query: 173 RMNLEVL 179
L++
Sbjct: 201 EALLKIF 207
>gi|406598669|ref|YP_006749799.1| DNA polymerase III subunit epsilon [Alteromonas macleodii ATCC
27126]
gi|406375990|gb|AFS39245.1| DNA polymerase III subunit epsilon [Alteromonas macleodii ATCC
27126]
Length = 711
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 19/170 (11%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V D+ETT + R + E G + + K E++ F TL+ P+ + +R GI
Sbjct: 544 VVVDIETTGGNSSYNR--ITEIGMVKLVGGK--EVDRFQTLLNPQ--RRIPSNITRLTGI 597
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
+ + V AP F EVA+ + + V+ HN+ FD IK+ FA + + P
Sbjct: 598 SDDMVADAPLFAEVAEHVANFTEDAVFVAHNV-NFDYGFIKQEFARLEQSFRRP------ 650
Query: 136 LGVLTEKFGRRAG----NMKMATLASYFGLG-QQKHRSLDDVRMNLEVLK 180
+ T + RR + +A L +F + +Q HR+L D + E+LK
Sbjct: 651 -KMCTVREMRRTYPGLPSYSLANLTKHFHIEMEQHHRALSDAKAAAELLK 699
>gi|407689571|ref|YP_006804744.1| DNA polymerase III subunit epsilon [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407292951|gb|AFT97263.1| DNA polymerase III subunit epsilon [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 711
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 19/170 (11%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V D+ETT + R + E G + + K E++ F TL+ P+ + +R GI
Sbjct: 544 VVVDIETTGGNSSYNR--ITEIGMVKLVGGK--EVDRFQTLLNPQ--RRIPSNITRLTGI 597
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
+ + V AP F EVA+ + + V+ HN+ FD IK+ FA + + P
Sbjct: 598 SDDMVADAPLFAEVAEHVANFTEDAVFVAHNV-NFDYGFIKQEFARLEQSFRRP------ 650
Query: 136 LGVLTEKFGRRAG----NMKMATLASYFGLG-QQKHRSLDDVRMNLEVLK 180
+ T + RR + +A L +F + +Q HR+L D + E+LK
Sbjct: 651 -KMCTVREMRRTYPGLPSYSLANLTKHFHIEMEQHHRALSDAKAAAELLK 699
>gi|149376092|ref|ZP_01893858.1| hypothetical protein MDG893_03900 [Marinobacter algicola DG893]
gi|149359729|gb|EDM48187.1| hypothetical protein MDG893_03900 [Marinobacter algicola DG893]
Length = 483
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 35/189 (18%)
Query: 7 SQAAGTAEIVFFDLETTVPR-------RAGQRFWVLEFGAIIVCPRKLVELESFSTLIKP 59
+Q G+A F D+ETT G RFW GA++ + TL+ P
Sbjct: 5 TQILGSATFAFLDIETTGGNPSHDRITEIGIRFW--RAGAVV---------GEWQTLVNP 53
Query: 60 KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAF 119
+ + ++S GIT + V AP FE++A+ + L ++ HN RFD IK F
Sbjct: 54 ETRISPFIES--LTGITNDMVADAPVFEDIAEVLEKQLKDTIFVAHNA-RFDYGFIKAEF 110
Query: 120 AEIGKPAPVPVGMIDSLGVL-TEKFGRRAG----NMKMATLASYFGLGQ-QKHRSLDDVR 173
+ G++ S VL T K R+ M L GL Q Q+HR+L DV
Sbjct: 111 RRL--------GLLFSAKVLCTVKLSRKLYPGFRRHNMDALIERHGLEQVQRHRALGDVA 162
Query: 174 MNLEVLKHC 182
+ +H
Sbjct: 163 AMMAFFEHA 171
>gi|205355328|ref|ZP_03222099.1| exonuclease possibly DNA polymerase III epsilon subunit
[Campylobacter jejuni subsp. jejuni CG8421]
gi|205346562|gb|EDZ33194.1| exonuclease possibly DNA polymerase III epsilon subunit
[Campylobacter jejuni subsp. jejuni CG8421]
Length = 233
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 18/167 (10%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+E+T G+ +LE GA+ + K E+ F + +K K++ + GIT E
Sbjct: 53 DIESTGGVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPE---NITELTGITYE 104
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
VE+AP +V L ++ HN+R FD + I +A E G G++ + +
Sbjct: 105 MVENAPSLTKVLSDFRLFLKDSIFVAHNVR-FDYSFISKALNECG------FGILLNRRI 157
Query: 139 LTEKFGR---RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
T +F + + K+ L + G+ HR+LDD E+LK+C
Sbjct: 158 CTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEILKYC 204
>gi|399516971|ref|ZP_10758546.1| DinG family ATP-dependent helicase YoaA [Leuconostoc
pseudomesenteroides 4882]
gi|398648155|emb|CCJ66573.1| DinG family ATP-dependent helicase YoaA [Leuconostoc
pseudomesenteroides 4882]
Length = 797
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 24/194 (12%)
Query: 16 VFFDLETTVPRRA-GQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
V DLETT A G R +++ G + RK+V+ F + + P L + + +
Sbjct: 8 VVLDLETTGQSVAKGGR--IIQIGMTFIRQRKIVD--HFESFVNPGQL--IDRQIQQLTH 61
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
I+++ V+ AP F+E+A + S+L+ V HNI FD + + F G PA + ID
Sbjct: 62 ISQKDVQHAPYFDEIAPMLQSLLSDAVIIAHNI-NFDYPYLNDEFERTGFPA-LQTSAID 119
Query: 135 SLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHCATVLFLE---- 189
++ L + A ++ L +Y + HR+ D H +LFLE
Sbjct: 120 TVQ-LAQILLPTAPGYRLLDLTTYLDINLVNAHRANADA--------HATALLFLEMWRR 170
Query: 190 -SSLPNTFNSNLQS 202
LP+ LQ+
Sbjct: 171 AEQLPSVVLQQLQT 184
>gi|291537849|emb|CBL10960.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
intestinalis XB6B4]
Length = 226
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 82/170 (48%), Gaps = 13/170 (7%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V +DLETT V+E A+ V K+V+ FS L+ P + +S +
Sbjct: 16 DYVLYDLETTGISSLYDE--VIEISAVKVRNGKIVD--EFSELVNPG--RPIPYAASSVN 69
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGK--PAPVPVG 131
I+ + VE+A FE+V + + V AGHNI FD +K + + K +
Sbjct: 70 NISDKMVENARSFEKVLPEFLAFAGDDVLAGHNIAGFD---MKFLYRDCEKYFGQTLTND 126
Query: 132 MIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLK 180
ID+L + F + +++ LA ++G+ + HR+L D RMN +V +
Sbjct: 127 YIDTLAIAKLCFPEWK-HRRLSDLAEHYGISTKGAHRALADCRMNQQVFE 175
>gi|225018549|ref|ZP_03707741.1| hypothetical protein CLOSTMETH_02498 [Clostridium methylpentosum
DSM 5476]
gi|224948681|gb|EEG29890.1| hypothetical protein CLOSTMETH_02498 [Clostridium methylpentosum
DSM 5476]
Length = 319
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 12/172 (6%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKP-KDLSAVALKSSR 71
+ V DLETT R ++E GA+ + ++VE SFS+L KP +DL ++ +
Sbjct: 20 TDYVVIDLETT--GYDPHRDEIIELGALRIHEGEVVE--SFSSLTKPQRDLDDYIIQLT- 74
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GI+ E + SAPE +V + + + GHN+ FD I + I + +
Sbjct: 75 --GISNEMLASAPELSDVFPRYLDFIGDSIVVGHNV-HFDVNFIYDTC--IKESLKLFTN 129
Query: 132 MIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHC 182
+ L L+ K + K+ ++S+F + + HRSL D + E + C
Sbjct: 130 DLVDLLWLSRKLLPDLTSHKLCRVSSHFNICVEGMHRSLFDCKTTFECFEKC 181
>gi|407685640|ref|YP_006800814.1| DNA polymerase III subunit epsilon [Alteromonas macleodii str.
'English Channel 673']
gi|407247251|gb|AFT76437.1| DNA polymerase III subunit epsilon [Alteromonas macleodii str.
'English Channel 673']
Length = 711
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 19/170 (11%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V D+ETT + R + E G + + K E++ F TL+ P+ + +R GI
Sbjct: 544 VVVDIETTGGNSSYNR--ITEIGMVKLVGGK--EVDRFQTLLNPQ--RRIPSNITRLTGI 597
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
+ + V AP F EVA+ + + V+ HN+ FD IK+ FA + + P
Sbjct: 598 SDDMVADAPLFAEVAEHVANFTEDAVFVAHNV-NFDYGFIKQEFARLEQSFRRP------ 650
Query: 136 LGVLTEKFGRRAG----NMKMATLASYFGLG-QQKHRSLDDVRMNLEVLK 180
+ T + RR + +A L +F + +Q HR+L D + E+LK
Sbjct: 651 -KMCTVREMRRTYPGLPSYSLANLTKHFHIEMEQHHRALSDAKAAAELLK 699
>gi|228928662|ref|ZP_04091698.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|229123127|ref|ZP_04252334.1| DNA polymerase III alpha subunit [Bacillus cereus 95/8201]
gi|228660421|gb|EEL16054.1| DNA polymerase III alpha subunit [Bacillus cereus 95/8201]
gi|228830981|gb|EEM76582.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 315
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + PK + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPK--RPIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA++
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASI 171
>gi|383825973|ref|ZP_09981115.1| DNA polymerase III subunit epsilon [Mycobacterium xenopi
RIVM700367]
gi|383333735|gb|EID12183.1| DNA polymerase III subunit epsilon [Mycobacterium xenopi
RIVM700367]
Length = 329
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 77/195 (39%), Gaps = 29/195 (14%)
Query: 51 ESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRF 110
+S +L+ P V + G+T +E P+F ++ D + +L+GR HN+ F
Sbjct: 49 QSVVSLLNP----GVDPGPTHVHGLTAAMLEDQPQFADIVDDVVKLLDGRTLVAHNV-AF 103
Query: 111 DCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRR----AGNMKMATLASYFGLGQQK- 165
D A + PV M T + RR N+++ TLA+++G+ QQ+
Sbjct: 104 DYAFLAAEAEFADAELPVDTVMC------TIELARRLDLGVDNLRLETLAAHWGVAQQRP 157
Query: 166 HRSLDDVRMNLEVLKHCATVLFLESSLPNTFNSNLQSSLTVTTRSRSNGKLPCREETSRK 225
H + DD L L LP Q + + R + + P T +
Sbjct: 158 HDAFDD-------------ALVLSRVLPAALERARQRDVWLPVRPVTRRRWPNGRVTHDE 204
Query: 226 SPPISLGYQRSAVPY 240
P+ + R PY
Sbjct: 205 LRPLKMLASRMPCPY 219
>gi|419667644|ref|ZP_14197606.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1997-10]
gi|380645599|gb|EIB62627.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1997-10]
Length = 256
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+E+T G+ +LE GA+ + K E+ F + +K K++ + GIT E
Sbjct: 76 DIESTGGVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPE---NITELTGITYE 127
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
VE+AP +V L ++ HN+R FD I +A E G G++ + +
Sbjct: 128 MVENAPSLTKVLSDFRLFLKDSIFVAHNVR-FDYGFISKALNECG------FGILLNRRI 180
Query: 139 LTEKFGR---RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
T +F + + K+ L + G+ HR+LDD E+LK+C
Sbjct: 181 CTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEILKYC 227
>gi|381395756|ref|ZP_09921451.1| DNA polymerase III subunit epsilon [Glaciecola punicea DSM 14233 =
ACAM 611]
gi|379328635|dbj|GAB56584.1| DNA polymerase III subunit epsilon [Glaciecola punicea DSM 14233 =
ACAM 611]
Length = 714
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 15/165 (9%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+ETT R + + E G + + ++V+ + +LI P+ + S GIT +
Sbjct: 555 DIETTGGRAGTHK--ITEIGMVKMVNGEIVD--QWQSLINPQRRIPSMITS--LTGITND 608
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V AP F ++AD++ + ++ HN+ FD I+E FA I + P L
Sbjct: 609 MVADAPLFADIADELEAFTENCIFVAHNV-NFDYGFIREEFARINRHYKRP-----KLCT 662
Query: 139 LTEKFGRRAG--NMKMATLASYFGLGQQK-HRSLDDVRMNLEVLK 180
+ + G + +A L +F +G Q+ HR+L D E+LK
Sbjct: 663 VQQMRTHYKGLPSYSLANLTRHFDIGMQRHHRALSDAVAASELLK 707
>gi|375099548|ref|ZP_09745811.1| exonuclease, DNA polymerase III, epsilon subunit family
[Saccharomonospora cyanea NA-134]
gi|374660280|gb|EHR60158.1| exonuclease, DNA polymerase III, epsilon subunit family
[Saccharomonospora cyanea NA-134]
Length = 572
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 76/173 (43%), Gaps = 22/173 (12%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V DLETT G + E GA+ V R L F+TL+ P + + GI
Sbjct: 18 VVVDLETTGGAPDGGN--ITEIGAVKV--RGGEVLGEFATLVDPG--VPIPPQIVELTGI 71
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
T V SAP E+V G V HN FD + ++ A AE G P P
Sbjct: 72 TTAMVRSAPGIEQVLPAFLEFAAGAVLVAHNA-GFDTSFLRAACAEHGFTWPKPT----- 125
Query: 136 LGVLTEKFGRRA------GNM--KMATLASYFGLGQQ-KHRSLDDVRMNLEVL 179
V T K RR G + ++++LA+ FG G HR+LDD + ++VL
Sbjct: 126 -VVCTLKLARRVLRQEPRGRLSYRLSSLAALFGSGTTPNHRALDDAKATVDVL 177
>gi|229174271|ref|ZP_04301804.1| DNA polymerase III alpha subunit [Bacillus cereus MM3]
gi|228609128|gb|EEK66417.1| DNA polymerase III alpha subunit [Bacillus cereus MM3]
Length = 318
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ ++ + +
Sbjct: 12 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RSIPDRITSLT 65
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K + +G P P +I
Sbjct: 66 GITNYRVSDAPTIEEVLPLFLAFLHTNVIIAHN-ASFDMRFLKSNVSMLGLPEP-QNKVI 123
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA++
Sbjct: 124 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASI 174
>gi|229918731|ref|YP_002887377.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Exiguobacterium sp. AT1b]
gi|229470160|gb|ACQ71932.1| DnaQ family exonuclease/DinG family helicase [Exiguobacterium sp.
AT1b]
Length = 936
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 8/109 (7%)
Query: 16 VFFDLETTVPR-RAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
V DLETT ++G ++EF A++V +++E +STLI+P + ++
Sbjct: 5 VIVDLETTGHSVKSGDE--LIEFAAVVVQEGEVIE--RYSTLIRPS--RPIPPFITQLTT 58
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
I+ E V AP FE+V I+ +L+GRV+ HN+ FD + E+ + G
Sbjct: 59 ISDEDVSDAPTFEDVIPDIWKMLDGRVFVAHNV-AFDLTFLNESLEQAG 106
>gi|196034235|ref|ZP_03101645.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus W]
gi|228947225|ref|ZP_04109519.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|195993309|gb|EDX57267.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus W]
gi|228812472|gb|EEM58799.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
Length = 315
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + PK + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPK--RPIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA++
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASI 171
>gi|260906794|ref|ZP_05915116.1| hypothetical protein BlinB_15797 [Brevibacterium linens BL2]
Length = 581
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 75/166 (45%), Gaps = 9/166 (5%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V DLETT + + E GA+ R L F +L+KP++ S ++ +R GI
Sbjct: 32 VIVDLETT--GTTAGKSEITEIGAVKT--RGGEVLGEFQSLVKPEE-SVISPFVARLTGI 86
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
T V+ AP V G V HN FD I+ A ++ P P ++D+
Sbjct: 87 THAMVDDAPSIRSVLPSFLEFCVGAVLVAHNA-PFDIGFIRSACEKLDYHWPQPT-VLDT 144
Query: 136 LGVLTEKFGR-RAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
+ + R N K++TLA++FG HR+L D + EVL
Sbjct: 145 VTLSRRVVSRDEVRNHKLSTLAAHFGTEVSPDHRALSDAKATGEVL 190
>gi|309812650|ref|ZP_07706394.1| GIY-YIG catalytic domain protein [Dermacoccus sp. Ellin185]
gi|308433345|gb|EFP57233.1| GIY-YIG catalytic domain protein [Dermacoccus sp. Ellin185]
Length = 608
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 75/167 (44%), Gaps = 11/167 (6%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V DLET R Q + E GA+ V R L F+TL+ P A+ + R GI
Sbjct: 29 VIVDLETAGGRPGAQ--GITEIGAVKV--RGGEVLGEFATLVDPG--CAIPPQIQRLTGI 82
Query: 76 TREAVESAPEFEEVADKIFSILN-GRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
T V +AP+ V F L V HN FD + A ++ P P P ++D
Sbjct: 83 TTAMVHNAPKLASVLPAFFEFLGPDAVLVAHNA-PFDVGFLTAAARDLEVPWPAP-AVVD 140
Query: 135 SLGVLTEKFGR-RAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
++ + R N ++ TLA++FG HR+L D + ++VL
Sbjct: 141 TVKLARALVPRDEVRNHRLGTLAAHFGASVNPNHRALADAQATVDVL 187
>gi|291537711|emb|CBL10823.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
intestinalis M50/1]
Length = 226
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 82/170 (48%), Gaps = 13/170 (7%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V +DLETT V+E A+ V K+V+ FS L+ P + +S +
Sbjct: 16 DYVLYDLETTGISSLYDE--VIEISAVKVRNGKIVD--EFSELVNPG--RPIPYAASSVN 69
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGK--PAPVPVG 131
I+ + VE+A FE+V + + V AGHNI FD +K + + K +
Sbjct: 70 NISDKMVENARSFEKVLPEFLAFAGDDVLAGHNIAGFD---MKFLYRDCEKYFGQTLTND 126
Query: 132 MIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLK 180
ID+L + F + +++ LA ++G+ + HR+L D RMN +V +
Sbjct: 127 YIDTLAIAKLCFPEWK-HRRLSDLAEHYGISTKGAHRALADCRMNQQVFE 175
>gi|386856057|ref|YP_006260234.1| DNA polymerase III subunit epsilon [Deinococcus gobiensis I-0]
gi|379999586|gb|AFD24776.1| DNA polymerase III, epsilon subunit [Deinococcus gobiensis I-0]
Length = 179
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 20/174 (11%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSA----VALKSS 70
+V FDLETT + +R V+E GA+ V ++ E + + TL++P + ++
Sbjct: 3 VVVFDLETT--GLSPERDAVVEIGAVRVVDGRVEETQKYETLVRPTGAGGERMLIPWRAE 60
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG---KPAP 127
R GI+ E VE AP EV + + HNI FD ++ A G KPA
Sbjct: 61 RVHGISNEMVEDAPTLAEVLPEFLEFVGDSAVVAHNI-GFDAGFMRVGAARHGLLWKPA- 118
Query: 128 VPVGMIDSLGVLTEKFGR-RAGNMKMATLASYFGLG---QQKHRSLDDVRMNLE 177
+ ++ + F R RA N+ + LA GL +HRS DV++ +
Sbjct: 119 ---AELCTVQLSRRAFPRERAHNLTV--LAERLGLNFAPGGRHRSFGDVQVTAQ 167
>gi|15835437|ref|NP_297196.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg]
gi|270285617|ref|ZP_06195011.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg]
gi|270289627|ref|ZP_06195929.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Weiss]
gi|301337013|ref|ZP_07225215.1| DNA polymerase III subunit epsilon [Chlamydia muridarum MopnTet14]
gi|8163328|gb|AAF73606.1| DNA polymerase III, epsilon subunit, putative [Chlamydia muridarum
Nigg]
Length = 250
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 83/173 (47%), Gaps = 12/173 (6%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
E V D ETT R V+EF AI ++++ S LI P+ AV+ +S +
Sbjct: 8 EFVCLDCETTGLDVKKDR--VIEFAAIRFTFDEVID--SVEFLIHPE--RAVSAESQKIH 61
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVW-AGHNIRRFDCARIKEAFAEIGKPA-PVPVG 131
I+ ++ P+F EV I R + GH++ FD + + +G+ P
Sbjct: 62 KISDAMLKDKPKFSEVFSTIKGFFKERDYIVGHHVG-FDLQVLSQESERLGETLLPKQHY 120
Query: 132 MIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLKHCA 183
+ID+L L +++G N + LA +F + Q HR++ DV MN++V KH
Sbjct: 121 VIDTLR-LAKEYGDSPNN-SLEALARHFNVPHQGNHRAMKDVEMNVKVFKHLT 171
>gi|397670751|ref|YP_006512286.1| exonuclease [Propionibacterium propionicum F0230a]
gi|395141551|gb|AFN45658.1| exonuclease [Propionibacterium propionicum F0230a]
Length = 561
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 76/163 (46%), Gaps = 11/163 (6%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT AG + E GA+ VC + L F TL++P ++ GIT
Sbjct: 30 DLETT---GAGPDSEITEIGAVKVCGGE--PLGEFQTLVRPSVPIPAMIQV--LTGITDA 82
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V +AP EV + +G V HN FD +K A ++G P PV ++D++ +
Sbjct: 83 MVATAPSPAEVIPEFVRFSDGCVLVAHNA-PFDVGFLKRACGQLGIRWPNPV-VVDTVTL 140
Query: 139 LTEKFGR-RAGNMKMATLASYF-GLGQQKHRSLDDVRMNLEVL 179
+ N K+ TLA++F + HR+L D +EVL
Sbjct: 141 ARRVLPKGEVINCKLGTLAAHFRATTRPDHRALSDAHATVEVL 183
>gi|340627196|ref|YP_004745648.1| hypothetical protein MCAN_22131 [Mycobacterium canettii CIPT
140010059]
gi|340005386|emb|CCC44545.1| conserved hypothetical protein [Mycobacterium canettii CIPT
140010059]
Length = 645
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 82/204 (40%), Gaps = 31/204 (15%)
Query: 16 VFFDLETTVPRRAGQRF----WVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
V DLETT R G + E GA+ VC + L F+TL+ P+ ++ + R
Sbjct: 44 VVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAV--LGEFATLVNPQH--SIPPQIVR 99
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GIT V +AP + V F V HN FD ++ A P P
Sbjct: 100 LTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNA-GFDIGFLRAAARRCDITWPQPQV 158
Query: 132 MIDSLGVLTEKFGRR------AGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVL----- 179
+ T + RR A ++++A LA F + HR+LDD R ++VL
Sbjct: 159 LC------TMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHALIE 212
Query: 180 ----KHCATVLFLESSLPNTFNSN 199
+ T L S LPN +
Sbjct: 213 RVGNQGVHTYAELRSYLPNVTQAQ 236
>gi|289747550|ref|ZP_06506928.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
02_1987]
gi|289759871|ref|ZP_06519249.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T85]
gi|294995379|ref|ZP_06801070.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis 210]
gi|298527188|ref|ZP_07014597.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
tuberculosis 94_M4241A]
gi|385992928|ref|YP_005911226.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
CCDC5180]
gi|385996567|ref|YP_005914865.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
CCDC5079]
gi|424806274|ref|ZP_18231705.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
W-148]
gi|424945591|ref|ZP_18361287.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
NCGM2209]
gi|289688078|gb|EFD55566.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
02_1987]
gi|289715435|gb|EFD79447.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis T85]
gi|298496982|gb|EFI32276.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
tuberculosis 94_M4241A]
gi|326905550|gb|EGE52483.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
W-148]
gi|339296521|gb|AEJ48632.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
CCDC5079]
gi|339300121|gb|AEJ52231.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
CCDC5180]
gi|358230106|dbj|GAA43598.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
NCGM2209]
Length = 329
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 16/134 (11%)
Query: 51 ESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRF 110
+S +L+ PK V + G+T ++ P+F ++A ++ +L GR HN+ F
Sbjct: 49 QSVVSLLNPK----VDPGPTHVHGLTAAMLDDQPQFADIAGEVVDVLRGRTLVAHNV-AF 103
Query: 111 DCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRR----AGNMKMATLASYFGLGQQK- 165
D A + PV M T + RR N+++ TLA+++G+ QQ+
Sbjct: 104 DYAFLAAEAEIAEAELPVDFVMC------TVELARRLQLGVDNLRLETLAAHWGVPQQRP 157
Query: 166 HRSLDDVRMNLEVL 179
H + DDVR+ +L
Sbjct: 158 HDAFDDVRVLTGIL 171
>gi|338536931|ref|YP_004670265.1| exonuclease [Myxococcus fulvus HW-1]
gi|337263027|gb|AEI69187.1| exonuclease [Myxococcus fulvus HW-1]
Length = 219
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 74/174 (42%), Gaps = 7/174 (4%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+ F DLETT R VLE + V R L L + ++P L+ ++ G
Sbjct: 31 LAFIDLETT--GLDASRHEVLEVAVLRVDARSLKVLAEYEARVQPTRLADAHPEALAVCG 88
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAP-VPVGMI 133
+ E A EE + +L G + AGHN FD + E + G P P V +
Sbjct: 89 YSDEEWRDALPLEEALATVTPLLAGTLVAGHNT-SFDWGFLVEGYRRAGLPLPGVDYHRL 147
Query: 134 DSLGVLTEKFGR-RAGNMKMATLASYFGLGQ-QKHRSLDDVRMNLEVLKHCATV 185
D+ + F ++ + LA FGL + HR++ D R LEV + C V
Sbjct: 148 DTASLAWPLFATGEVESLSLNALAKRFGLHRPSPHRAMADARCALEVAR-CLAV 200
>gi|423611819|ref|ZP_17587680.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD107]
gi|401246826|gb|EJR53170.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD107]
Length = 315
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ + HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLDTNIIVAHN-ASFDMRFLKSNVNMLGLPEP-KNNVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H +LDD V + CA+V
Sbjct: 121 DTV-FLAKKYMKYAPNHKLETLKRMLGIRLSSHNALDDCITCAAVYQRCASV 171
>gi|346316469|ref|ZP_08857973.1| DNA polymerase III, alpha subunit, Gram-positive type
[Erysipelotrichaceae bacterium 2_2_44A]
gi|345903092|gb|EGX72862.1| DNA polymerase III, alpha subunit, Gram-positive type
[Erysipelotrichaceae bacterium 2_2_44A]
Length = 1448
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 11/145 (7%)
Query: 18 FDLETTVPRRAGQRF-WVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGIT 76
FDLETT RF ++EFG IV R ++ S IKP A++ ++ GIT
Sbjct: 401 FDLETT---GLSSRFDHIIEFGGQIVKDRACIK--SLQLFIKPP--VALSAFTTELTGIT 453
Query: 77 REAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSL 136
E +++A F + D+I + + HN FD + + A IG+P P+ +ID+L
Sbjct: 454 EEHMKNAKSFADSIDEILDFIGDSILVAHN-ATFDYNFLNDELARIGRP-PIMNPVIDTL 511
Query: 137 GVLTEKFGRRAGNMKMATLASYFGL 161
+ R G ++ +A +G+
Sbjct: 512 DLARSMQADRKG-YRLGQIARSYGI 535
>gi|116333503|ref|YP_795030.1| Rad3-related DNA helicase [Lactobacillus brevis ATCC 367]
gi|116098850|gb|ABJ63999.1| Rad3-related DNA helicase [Lactobacillus brevis ATCC 367]
Length = 948
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 19 DLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITR 77
D+ETT G R +++ G + V +++ F T + P L + SR GIT
Sbjct: 11 DIETTGTSVTDGDR--IIQIGCVFVQHNQVIN--HFETDVNP--LKEIPAAISRLTGITN 64
Query: 78 EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLG 137
+ V AP F++VA ++S+L V+ HN+ FD I +G PA +P+ +D++
Sbjct: 65 KRVRHAPLFDDVAGTLYSLLTNTVFVAHNV-NFDLPFINAELERVGYPA-LPIAAVDTVS 122
Query: 138 VLTEKFGRRAGNMKMATLASYFGLGQQKHRSLD 170
L++ A + ++ L+ F + S D
Sbjct: 123 -LSQILLPTATSFRLRDLSRLFNIEHDNPHSAD 154
>gi|423599107|ref|ZP_17575107.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD078]
gi|401236091|gb|EJR42557.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD078]
Length = 315
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ ++ + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYHNHELVD--QFVSYVNPE--RSIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNNVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA V
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAV 171
>gi|254233206|ref|ZP_04926532.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
tuberculosis C]
gi|124602999|gb|EAY61274.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
tuberculosis C]
Length = 329
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 16/134 (11%)
Query: 51 ESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRF 110
+S +L+ PK V + G+T ++ P+F ++A ++ +L GR HN+ F
Sbjct: 49 QSVVSLLNPK----VDPGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNV-AF 103
Query: 111 DCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRR----AGNMKMATLASYFGLGQQK- 165
D A + PV M T + RR N+++ TLA+++G+ QQ+
Sbjct: 104 DYAFLAAEAEIAEAELPVDFVMC------TVELARRLQLGVDNLRLETLAAHWGVPQQRP 157
Query: 166 HRSLDDVRMNLEVL 179
H + DDVR+ +L
Sbjct: 158 HDAFDDVRVLTGIL 171
>gi|449064248|ref|YP_007431331.1| hypothetical protein K60_022730 [Mycobacterium bovis BCG str. Korea
1168P]
gi|449032756|gb|AGE68183.1| hypothetical protein K60_022730 [Mycobacterium bovis BCG str. Korea
1168P]
Length = 647
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 82/204 (40%), Gaps = 31/204 (15%)
Query: 16 VFFDLETTVPRRAGQRF----WVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
V DLETT R G + E GA+ VC + L F+TL+ P+ ++ + R
Sbjct: 46 VVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAV--LGEFATLVNPQH--SIPPQIVR 101
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GIT V +AP + V F V HN FD ++ A P P
Sbjct: 102 LTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNA-GFDIGFLRAAARRCDITWPQPQV 160
Query: 132 MIDSLGVLTEKFGRR------AGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVL----- 179
+ T + RR A ++++A LA F + HR+LDD R ++VL
Sbjct: 161 LC------TMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHALIE 214
Query: 180 ----KHCATVLFLESSLPNTFNSN 199
+ T L S LPN +
Sbjct: 215 RVGNQGVHTYAELRSYLPNVTQAQ 238
>gi|379708059|ref|YP_005263264.1| DNA-directed DNA polymerase [Nocardia cyriacigeorgica GUH-2]
gi|374845558|emb|CCF62624.1| DNA-directed DNA polymerase [Nocardia cyriacigeorgica GUH-2]
Length = 583
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 74/171 (43%), Gaps = 20/171 (11%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V DLETT + + + E GA+ V R L F+TL+ P A+ GI
Sbjct: 29 VVVDLETT--GTSPESDAITEIGAVKV--RGGEVLGEFATLVDPG--RAIPPAVVHVTGI 82
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
T V +AP E V G V HN RFD A ++ A A G P P +
Sbjct: 83 TTAMVCAAPPIEAVLPGFLEFAAGAVLVAHNA-RFDMAFLRAAAARCGTPWPA------A 135
Query: 136 LGVLTEKFGRR------AGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVL 179
V T + RR A +++++ LA G Q HR+L D R ++VL
Sbjct: 136 QVVCTVRLARRVLARDEAPSVRLSVLARVLGASTQPTHRALADARATVDVL 186
>gi|31793370|ref|NP_855863.1| hypothetical protein Mb2214 [Mycobacterium bovis AF2122/97]
gi|121638072|ref|YP_978296.1| hypothetical protein BCG_2207 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224990566|ref|YP_002645253.1| hypothetical protein JTY_2201 [Mycobacterium bovis BCG str. Tokyo
172]
gi|378771921|ref|YP_005171654.1| hypothetical protein BCGMEX_2194 [Mycobacterium bovis BCG str.
Mexico]
gi|31618962|emb|CAD97067.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
gi|121493720|emb|CAL72195.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224773679|dbj|BAH26485.1| hypothetical protein JTY_2201 [Mycobacterium bovis BCG str. Tokyo
172]
gi|341602110|emb|CCC64784.1| conserved hypothetical protein [Mycobacterium bovis BCG str. Moreau
RDJ]
gi|356594242|gb|AET19471.1| Hypothetical protein BCGMEX_2194 [Mycobacterium bovis BCG str.
Mexico]
Length = 645
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 82/204 (40%), Gaps = 31/204 (15%)
Query: 16 VFFDLETTVPRRAGQRF----WVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
V DLETT R G + E GA+ VC + L F+TL+ P+ ++ + R
Sbjct: 44 VVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAV--LGEFATLVNPQH--SIPPQIVR 99
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GIT V +AP + V F V HN FD ++ A P P
Sbjct: 100 LTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNA-GFDIGFLRAAARRCDITWPQPQV 158
Query: 132 MIDSLGVLTEKFGRR------AGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVL----- 179
+ T + RR A ++++A LA F + HR+LDD R ++VL
Sbjct: 159 LC------TMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHALIE 212
Query: 180 ----KHCATVLFLESSLPNTFNSN 199
+ T L S LPN +
Sbjct: 213 RVGNQGVHTYAELRSYLPNVTQAQ 236
>gi|289574877|ref|ZP_06455104.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|339632219|ref|YP_004723861.1| hypothetical protein MAF_22020 [Mycobacterium africanum GM041182]
gi|289539308|gb|EFD43886.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|339331575|emb|CCC27272.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
Length = 645
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 82/204 (40%), Gaps = 31/204 (15%)
Query: 16 VFFDLETTVPRRAGQRF----WVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
V DLETT R G + E GA+ VC + L F+TL+ P+ ++ + R
Sbjct: 44 VVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAV--LGEFATLVNPQH--SIPPQIVR 99
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GIT V +AP + V F V HN FD ++ A P P
Sbjct: 100 LTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNA-GFDIGFLRAAARRCDITWPQPQV 158
Query: 132 MIDSLGVLTEKFGRR------AGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVL----- 179
+ T + RR A ++++A LA F + HR+LDD R ++VL
Sbjct: 159 LC------TMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHALIE 212
Query: 180 ----KHCATVLFLESSLPNTFNSN 199
+ T L S LPN +
Sbjct: 213 RVGNQGVHTYAELRSYLPNVTQAQ 236
>gi|373124717|ref|ZP_09538557.1| DNA polymerase III, alpha subunit, Gram-positive type
[Erysipelotrichaceae bacterium 21_3]
gi|422327871|ref|ZP_16408898.1| DNA polymerase III, alpha subunit, Gram-positive type
[Erysipelotrichaceae bacterium 6_1_45]
gi|371658845|gb|EHO24119.1| DNA polymerase III, alpha subunit, Gram-positive type
[Erysipelotrichaceae bacterium 21_3]
gi|371662141|gb|EHO27352.1| DNA polymerase III, alpha subunit, Gram-positive type
[Erysipelotrichaceae bacterium 6_1_45]
Length = 1448
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 11/145 (7%)
Query: 18 FDLETTVPRRAGQRF-WVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGIT 76
FDLETT RF ++EFG IV R ++ S IKP A++ ++ GIT
Sbjct: 401 FDLETT---GLSSRFDHIIEFGGQIVKDRACIK--SLQLFIKPP--VALSAFTTELTGIT 453
Query: 77 REAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSL 136
E +++A F + D+I + + HN FD + + A IG+P P+ +ID+L
Sbjct: 454 EEHMKNAKSFADSIDEILDFIGDSILVAHN-ATFDYNFLNDELARIGRP-PIMNPVIDTL 511
Query: 137 GVLTEKFGRRAGNMKMATLASYFGL 161
+ R G ++ +A +G+
Sbjct: 512 DLARSMQADRKG-YRLGQIARSYGI 535
>gi|15609328|ref|NP_216707.1| Conserved hypothetical protein [Mycobacterium tuberculosis H37Rv]
gi|148662008|ref|YP_001283531.1| hypothetical protein MRA_2207 [Mycobacterium tuberculosis H37Ra]
gi|148823398|ref|YP_001288152.1| hypothetical protein TBFG_12219 [Mycobacterium tuberculosis F11]
gi|167969416|ref|ZP_02551693.1| hypothetical protein MtubH3_15860 [Mycobacterium tuberculosis
H37Ra]
gi|253798744|ref|YP_003031745.1| hypothetical protein TBMG_04035 [Mycobacterium tuberculosis KZN
1435]
gi|254551229|ref|ZP_05141676.1| hypothetical protein Mtube_12318 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|289443698|ref|ZP_06433442.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289447819|ref|ZP_06437563.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289570307|ref|ZP_06450534.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289745464|ref|ZP_06504842.1| DNA polymerase III, epsilon subunit [Mycobacterium tuberculosis
02_1987]
gi|294993576|ref|ZP_06799267.1| hypothetical protein Mtub2_03474 [Mycobacterium tuberculosis 210]
gi|297634780|ref|ZP_06952560.1| hypothetical protein MtubK4_11686 [Mycobacterium tuberculosis KZN
4207]
gi|297731771|ref|ZP_06960889.1| hypothetical protein MtubKR_11808 [Mycobacterium tuberculosis KZN
R506]
gi|298525683|ref|ZP_07013092.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|313659105|ref|ZP_07815985.1| hypothetical protein MtubKV_11818 [Mycobacterium tuberculosis KZN
V2475]
gi|375296002|ref|YP_005100269.1| hypothetical protein TBSG_01801 [Mycobacterium tuberculosis KZN
4207]
gi|392386834|ref|YP_005308463.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|392432212|ref|YP_006473256.1| hypothetical protein TBXG_001772 [Mycobacterium tuberculosis KZN
605]
gi|397674076|ref|YP_006515611.1| exonuclease, DNA polymerase III, epsilon subunit [Mycobacterium
tuberculosis H37Rv]
gi|424804529|ref|ZP_18229960.1| DNA polymerase III [Mycobacterium tuberculosis W-148]
gi|424947873|ref|ZP_18363569.1| hypothetical protein NCGM2209_2508 [Mycobacterium tuberculosis
NCGM2209]
gi|1722908|sp|Q10384.1|Y2191_MYCTU RecName: Full=Uncharacterized protein Rv2191/MT2247
gi|148506160|gb|ABQ73969.1| hypothetical protein MRA_2207 [Mycobacterium tuberculosis H37Ra]
gi|148721925|gb|ABR06550.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
gi|253320247|gb|ACT24850.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
1435]
gi|289416617|gb|EFD13857.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289420777|gb|EFD17978.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289544061|gb|EFD47709.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289685992|gb|EFD53480.1| DNA polymerase III, epsilon subunit [Mycobacterium tuberculosis
02_1987]
gi|298495477|gb|EFI30771.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|326903805|gb|EGE50738.1| DNA polymerase III [Mycobacterium tuberculosis W-148]
gi|328458507|gb|AEB03930.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
gi|358232388|dbj|GAA45880.1| hypothetical protein NCGM2209_2508 [Mycobacterium tuberculosis
NCGM2209]
gi|378545385|emb|CCE37662.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|392053621|gb|AFM49179.1| hypothetical protein TBXG_001772 [Mycobacterium tuberculosis KZN
605]
gi|395138981|gb|AFN50140.1| exonuclease, DNA polymerase III, epsilon subunit [Mycobacterium
tuberculosis H37Rv]
gi|440581666|emb|CCG12069.1| hypothetical protein MT7199_2221 [Mycobacterium tuberculosis
7199-99]
gi|444895708|emb|CCP44968.1| Conserved hypothetical protein [Mycobacterium tuberculosis H37Rv]
Length = 645
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 82/204 (40%), Gaps = 31/204 (15%)
Query: 16 VFFDLETTVPRRAGQRF----WVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
V DLETT R G + E GA+ VC + L F+TL+ P+ ++ + R
Sbjct: 44 VVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAV--LGEFATLVNPQH--SIPPQIVR 99
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GIT V +AP + V F V HN FD ++ A P P
Sbjct: 100 LTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNA-GFDIGFLRAAARRCDITWPQPQV 158
Query: 132 MIDSLGVLTEKFGRR------AGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVL----- 179
+ T + RR A ++++A LA F + HR+LDD R ++VL
Sbjct: 159 LC------TMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHALIE 212
Query: 180 ----KHCATVLFLESSLPNTFNSN 199
+ T L S LPN +
Sbjct: 213 RVGNQGVHTYAELRSYLPNVTQAQ 236
>gi|423202221|ref|ZP_17188800.1| DNA polymerase III, epsilon subunit [Aeromonas veronii AER39]
gi|404615373|gb|EKB12345.1| DNA polymerase III, epsilon subunit [Aeromonas veronii AER39]
Length = 244
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 110/256 (42%), Gaps = 35/256 (13%)
Query: 16 VFFDLETTVPRRAGQRFW----VLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
+ D ETT AG + ++E G + V RKL + IKP L V ++ +
Sbjct: 10 IILDTETTGMNTAGGPVYLGHRIIEIGCVEVINRKLTG-NHYHVYIKPDRL--VDPEAIQ 66
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG---KPAPV 128
GIT E + P F ++AD+ + G HN FD + + F+++G K A +
Sbjct: 67 VHGITDEFLRDKPSFSQIADEFLDFIRGAELIAHNA-PFDVSFMDYEFSKLGLNFKTADI 125
Query: 129 PVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFL 188
+ D+L + + F + N+ + L +G+ HR+L ++ E+L A V L
Sbjct: 126 -CTITDTLAMARDLFPGKRNNLDV--LCDRYGI-DNSHRTLHGALLDAEIL---ADVYLL 178
Query: 189 ESSLPNTFNSNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQRSAVPYTR--TSLG 246
+ Q+ L + T S N E+++ + L R A+ R T +
Sbjct: 179 MTG--------GQTKLNLATESNEN-------ESNQDTSIRRLESNRPALKVVRASTEVQ 223
Query: 247 KMTESVKNLLCKSQGS 262
+ E+ +L+ K GS
Sbjct: 224 ALHEARLDLVQKKGGS 239
>gi|417788257|ref|ZP_12435940.1| DinG family ATP-dependent helicase YoaA [Lactobacillus salivarius
NIAS840]
gi|334308434|gb|EGL99420.1| DinG family ATP-dependent helicase YoaA [Lactobacillus salivarius
NIAS840]
Length = 929
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 9/162 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT P++ G +++F V K+V FSTLI P + + + GI +
Sbjct: 11 DLETTGPKQDGSD-KIIQFSCDFVQSNKIVN--HFSTLINPG--MPIPAEVKKLTGIKDK 65
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V AP F+EVA I+++L + HN+ FD + + G P + + M+D++
Sbjct: 66 DVRYAPYFDEVAGTIYAMLQNTTFVAHNV-NFDYSFLSSELERAGYPE-LELPMMDTVQ- 122
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDDVRMNLEVL 179
LT+ + ++ ++ Y L H++ D + E+L
Sbjct: 123 LTQIIYPTLVSYRLIDVSKYLQLSHIHPHKADSDTKATAELL 164
>gi|254232344|ref|ZP_04925671.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|289750785|ref|ZP_06510163.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|422813222|ref|ZP_16861597.1| hypothetical protein TMMG_01471 [Mycobacterium tuberculosis
CDC1551A]
gi|124601403|gb|EAY60413.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|289691372|gb|EFD58801.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|323719091|gb|EGB28236.1| hypothetical protein TMMG_01471 [Mycobacterium tuberculosis
CDC1551A]
Length = 647
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 82/204 (40%), Gaps = 31/204 (15%)
Query: 16 VFFDLETTVPRRAGQRF----WVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
V DLETT R G + E GA+ VC + L F+TL+ P+ ++ + R
Sbjct: 46 VVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAV--LGEFATLVNPQH--SIPPQIVR 101
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GIT V +AP + V F V HN FD ++ A P P
Sbjct: 102 LTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNA-GFDIGFLRAAARRCDITWPQPQV 160
Query: 132 MIDSLGVLTEKFGRR------AGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVL----- 179
+ T + RR A ++++A LA F + HR+LDD R ++VL
Sbjct: 161 LC------TMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHALIE 214
Query: 180 ----KHCATVLFLESSLPNTFNSN 199
+ T L S LPN +
Sbjct: 215 RVGNQGVHTYAELRSYLPNVTQAQ 238
>gi|15843331|ref|NP_338368.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
CDC1551]
gi|148824916|ref|YP_001289670.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis F11]
gi|254366256|ref|ZP_04982300.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
tuberculosis str. Haarlem]
gi|254552821|ref|ZP_05143268.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|289763891|ref|ZP_06523269.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
tuberculosis GM 1503]
gi|306778600|ref|ZP_07416937.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu002]
gi|306786623|ref|ZP_07424945.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu003]
gi|306790989|ref|ZP_07429311.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu004]
gi|306791307|ref|ZP_07429609.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu005]
gi|306795373|ref|ZP_07433675.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu006]
gi|306801344|ref|ZP_07438012.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu008]
gi|306805555|ref|ZP_07442223.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu007]
gi|306969951|ref|ZP_07482612.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu009]
gi|392388303|ref|YP_005309932.1| dnaQ [Mycobacterium tuberculosis UT205]
gi|422814964|ref|ZP_16863182.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
CDC1551A]
gi|13883693|gb|AAK48182.1| DNA polymerase III, epsilon subunit [Mycobacterium tuberculosis
CDC1551]
gi|134151768|gb|EBA43813.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
tuberculosis str. Haarlem]
gi|148723443|gb|ABR08068.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
F11]
gi|289711397|gb|EFD75413.1| DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
tuberculosis GM 1503]
gi|308328330|gb|EFP17181.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu002]
gi|308328734|gb|EFP17585.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu003]
gi|308332576|gb|EFP21427.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu004]
gi|308340068|gb|EFP28919.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu005]
gi|308344057|gb|EFP32908.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu006]
gi|308347855|gb|EFP36706.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu007]
gi|308351843|gb|EFP40694.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu008]
gi|308352508|gb|EFP41359.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu009]
gi|323717575|gb|EGB26777.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
CDC1551A]
gi|378546854|emb|CCE39133.1| dnaQ [Mycobacterium tuberculosis UT205]
gi|379030101|dbj|BAL67834.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis str.
Erdman = ATCC 35801]
gi|440583222|emb|CCG13625.1| putative DNA POLYMERASE III (EPSILON SUBUNIT) DNAQ [Mycobacterium
tuberculosis 7199-99]
Length = 329
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 16/134 (11%)
Query: 51 ESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRF 110
+S +L+ PK V + G+T ++ P+F ++A ++ +L GR HN+ F
Sbjct: 49 QSVVSLLNPK----VDPGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNV-AF 103
Query: 111 DCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRR----AGNMKMATLASYFGLGQQK- 165
D A + PV M T + RR N+++ TLA+++G+ QQ+
Sbjct: 104 DYAFLAAEAEIAEAELPVDFVMC------TVELARRLQLGVDNLRLETLAAHWGVPQQRP 157
Query: 166 HRSLDDVRMNLEVL 179
H + DDVR+ +L
Sbjct: 158 HDAFDDVRVLTGIL 171
>gi|148925831|ref|ZP_01809518.1| exonuclease, possibly dna polymerase III epsilon subunit
[Campylobacter jejuni subsp. jejuni CG8486]
gi|419648243|ref|ZP_14179589.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 9217]
gi|145844817|gb|EDK21921.1| exonuclease, possibly dna polymerase III epsilon subunit
[Campylobacter jejuni subsp. jejuni CG8486]
gi|380626654|gb|EIB45102.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 9217]
Length = 256
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+E+T G+ +LE GA+ + K E+ F + +K K++ + GIT E
Sbjct: 76 DIESTGSVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPE---NITELTGITYE 127
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
VE+AP +V L ++ HN+ RFD + I +A E G G++ + +
Sbjct: 128 MVENAPSLTKVLSDFRLFLKDSIFVAHNV-RFDYSFISKALNECG------FGILLNRRI 180
Query: 139 LTEKFGR---RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
T +F + + K+ L + G+ HR+LDD E+ K+C
Sbjct: 181 CTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEIFKYC 227
>gi|15610847|ref|NP_218228.1| Probable DNA polymerase III (epsilon subunit) DnaQ [Mycobacterium
tuberculosis H37Rv]
gi|148663576|ref|YP_001285099.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
H37Ra]
gi|167970866|ref|ZP_02553143.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
H37Ra]
gi|306778068|ref|ZP_07416405.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu001]
gi|306974185|ref|ZP_07486846.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu010]
gi|307081893|ref|ZP_07491063.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu011]
gi|307086506|ref|ZP_07495619.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu012]
gi|397675668|ref|YP_006517203.1| exonuclease, DNA polymerase III, epsilon subunit [Mycobacterium
tuberculosis H37Rv]
gi|148507728|gb|ABQ75537.1| DNA polymerase III subunit epsilon DnaQ [Mycobacterium tuberculosis
H37Ra]
gi|308213597|gb|EFO72996.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu001]
gi|308356458|gb|EFP45309.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu010]
gi|308360405|gb|EFP49256.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu011]
gi|308364101|gb|EFP52952.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
SUMu012]
gi|395140573|gb|AFN51732.1| exonuclease, DNA polymerase III, epsilon subunit [Mycobacterium
tuberculosis H37Rv]
gi|444897271|emb|CCP46537.1| Probable DNA polymerase III (epsilon subunit) DnaQ [Mycobacterium
tuberculosis H37Rv]
Length = 329
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 16/134 (11%)
Query: 51 ESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRF 110
+S +L+ PK V + G+T ++ P+F ++A ++ +L GR HN+ F
Sbjct: 49 QSVVSLLNPK----VDPGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNV-AF 103
Query: 111 DCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRR----AGNMKMATLASYFGLGQQK- 165
D A + PV M T + RR N+++ TLA+++G+ QQ+
Sbjct: 104 DYAFLAAEAEIAEAELPVDFVMC------TVELARRLQLGVDNLRLETLAAHWGVPQQRP 157
Query: 166 HRSLDDVRMNLEVL 179
H + DDVR+ +L
Sbjct: 158 HDAFDDVRVLTGIL 171
>gi|385995152|ref|YP_005913450.1| hypothetical protein [Mycobacterium tuberculosis CCDC5079]
gi|339295106|gb|AEJ47217.1| hypothetical protein CCDC5079_2027 [Mycobacterium tuberculosis
CCDC5079]
Length = 645
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 82/204 (40%), Gaps = 31/204 (15%)
Query: 16 VFFDLETTVPRRAGQRF----WVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
V DLETT R G + E GA+ VC + L F+TL+ P+ ++ + R
Sbjct: 44 VVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAV--LGEFATLVNPQH--SIPPQIVR 99
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GIT V +AP + V F V HN FD ++ A P P
Sbjct: 100 LTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNA-GFDIGFLRAAARRCDITWPQPQV 158
Query: 132 MIDSLGVLTEKFGRR------AGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVL----- 179
+ T + RR A ++++A LA F + HR+LDD R ++VL
Sbjct: 159 LC------TMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHALIE 212
Query: 180 ----KHCATVLFLESSLPNTFNSN 199
+ T L S LPN +
Sbjct: 213 RVGNQGVHTYAELRSYLPNVTQAQ 236
>gi|385998966|ref|YP_005917265.1| hypothetical protein MTCTRI2_2226 [Mycobacterium tuberculosis
CTRI-2]
gi|344220013|gb|AEN00644.1| hypothetical protein MTCTRI2_2226 [Mycobacterium tuberculosis
CTRI-2]
Length = 645
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 82/204 (40%), Gaps = 31/204 (15%)
Query: 16 VFFDLETTVPRRAGQRF----WVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
V DLETT R G + E GA+ VC + L F+TL+ P+ ++ + R
Sbjct: 44 VVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAV--LGEFATLVNPQH--SIPPQIVR 99
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GIT V +AP + V F V HN FD ++ A P P
Sbjct: 100 LTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNA-GFDIGFLRAAARRCDITWPQPQV 158
Query: 132 MIDSLGVLTEKFGRR------AGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVL----- 179
+ T + RR A ++++A LA F + HR+LDD R ++VL
Sbjct: 159 LC------TMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHALIE 212
Query: 180 ----KHCATVLFLESSLPNTFNSN 199
+ T L S LPN +
Sbjct: 213 RVGNQGVHTYAELRSYLPNVTQAQ 236
>gi|229134413|ref|ZP_04263226.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST196]
gi|228649034|gb|EEL05056.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST196]
Length = 318
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ ++ + +
Sbjct: 12 DYVVIDFETTGFNPYNDK--IIQVAAVKYHNHELVD--QFVSYVNPE--RSIPDRITSLT 65
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 66 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNNVI 123
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA V
Sbjct: 124 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAV 174
>gi|441516128|ref|ZP_20997879.1| DNA polymerase III subunit epsilon [Gordonia hirsuta DSM 44140 =
NBRC 16056]
gi|441456999|dbj|GAC55840.1| DNA polymerase III subunit epsilon [Gordonia hirsuta DSM 44140 =
NBRC 16056]
Length = 599
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 71/166 (42%), Gaps = 8/166 (4%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+V DLETT + Q+ + E GA+ + R L F+TL+ P + + G
Sbjct: 33 LVVVDLETT--GGSAQQDAITEIGAVKI--RGGQVLGEFATLVDPG--RPIPPQIVSLTG 86
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
IT V AP EEV F G + HN RFD ++ A P P +
Sbjct: 87 ITTAMVHDAPRIEEVLPAFFEFARGAILVAHNA-RFDLGFLRRAAERQQLAWPFPAHLCT 145
Query: 135 SLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
+ + A +K++ LA F + + HR+LDD R ++V
Sbjct: 146 VVMARRILSQQEAPTVKLSALAELFDVAVKPTHRALDDARATVDVF 191
>gi|417810349|ref|ZP_12457028.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
salivarius GJ-24]
gi|335349145|gb|EGM50645.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
salivarius GJ-24]
Length = 921
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 9/162 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT P++ G +++F V K+V FSTLI P + + + GI +
Sbjct: 3 DLETTGPKQDGSD-KIIQFSCDFVQSNKIVN--HFSTLINPG--MPIPAEVKKLTGIKDK 57
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V AP F+EVA I+++L + HN+ FD + + G P + + M+D++
Sbjct: 58 DVRYAPYFDEVAGTIYAMLQNTTFVAHNV-NFDYSFLSSELERAGYPE-LELPMMDTVQ- 114
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDDVRMNLEVL 179
LT+ + ++ ++ Y L H++ D + E+L
Sbjct: 115 LTQIIYPTLVSYRLIDVSKYLQLSHIHPHKADSDTKATAELL 156
>gi|229061173|ref|ZP_04198523.1| DNA polymerase III alpha subunit [Bacillus cereus AH603]
gi|228718044|gb|EEL69684.1| DNA polymerase III alpha subunit [Bacillus cereus AH603]
Length = 318
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ ++ + +
Sbjct: 12 DYVVIDFETTGFNPYNDK--IIQVAAVKYHNHELVD--QFVSYVNPE--RSIPDRITSLT 65
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 66 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNNVI 123
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA V
Sbjct: 124 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAV 174
>gi|227890751|ref|ZP_04008556.1| DNA-directed DNA polymerase III epsilon subunit, partial
[Lactobacillus salivarius ATCC 11741]
gi|227867160|gb|EEJ74581.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
salivarius ATCC 11741]
Length = 937
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 9/162 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT P++ G +++F V K+V FSTLI P + + + GI +
Sbjct: 19 DLETTGPKQDGSD-KIIQFSCDFVQSNKIVN--HFSTLINPG--MPIPAEVKKLTGIKDK 73
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V AP F+EVA I+++L + HN+ FD + + G P + + M+D++
Sbjct: 74 DVRYAPYFDEVAGTIYAMLQNTTFVAHNV-NFDYSFLSSELERAGYPE-LELPMMDTVQ- 130
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDDVRMNLEVL 179
LT+ + ++ ++ Y L H++ D + E+L
Sbjct: 131 LTQIIYPTLVSYRLIDVSKYLQLSHIHPHKADSDTKATAELL 172
>gi|229168326|ref|ZP_04296051.1| DNA polymerase III alpha subunit [Bacillus cereus AH621]
gi|228615152|gb|EEK72252.1| DNA polymerase III alpha subunit [Bacillus cereus AH621]
Length = 318
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ ++ + +
Sbjct: 12 DYVVIDFETTGFNPYNDK--IIQVAAVKYHNHELVD--QFVSYVNPE--RSIPDRITSLT 65
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 66 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNNVI 123
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA V
Sbjct: 124 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAV 174
>gi|313899185|ref|ZP_07832705.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
sp. HGF2]
gi|312956008|gb|EFR37656.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
sp. HGF2]
Length = 1448
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 11/145 (7%)
Query: 18 FDLETTVPRRAGQRF-WVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGIT 76
FDLETT RF ++EFG IV R ++ S IKP A++ ++ GIT
Sbjct: 401 FDLETT---GLSSRFDHIIEFGGQIVKDRACIK--SLQLFIKPP--VALSAFTTELTGIT 453
Query: 77 REAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSL 136
E +++A F + D+I + + HN FD + + A IG+P P+ +ID+L
Sbjct: 454 EEHMKNAKSFADSIDEILDFIGDSILVAHN-ATFDYNFLNDELARIGRP-PIMNPVIDTL 511
Query: 137 GVLTEKFGRRAGNMKMATLASYFGL 161
+ R G ++ +A +G+
Sbjct: 512 DLARSMQADRKG-YRLGQIARSYGI 535
>gi|194467815|ref|ZP_03073801.1| DNA polymerase III, epsilon subunit [Lactobacillus reuteri 100-23]
gi|194452668|gb|EDX41566.1| DNA polymerase III, epsilon subunit [Lactobacillus reuteri 100-23]
Length = 283
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 12/154 (7%)
Query: 34 VLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKI 93
+++ AI KLV+ +F TLI P D S KS + I+ ++++ P F+EV
Sbjct: 33 IIQLSAIKYIDDKLVD--TFDTLINP-DGSNNNAKS--VNNISESSLKNQPTFDEVIGDF 87
Query: 94 FSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMA 153
+ + W GHN+ FD + +K +E K A +D+L + +G + GN K+
Sbjct: 88 VNFVEDLPWVGHNL-SFDFSFLK---SEELKIASFKKNSVDTLQIARSIYGNK-GN-KLQ 141
Query: 154 TLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVL 186
LA F + + H SL D ++ + +H +V
Sbjct: 142 QLAKKFNIDYKNLHNSLYDAQIAASLYQHLRSVF 175
>gi|15841682|ref|NP_336719.1| hypothetical protein MT2247 [Mycobacterium tuberculosis CDC1551]
gi|289754299|ref|ZP_06513677.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|308232063|ref|ZP_07414780.2| hypothetical protein TMAG_00380 [Mycobacterium tuberculosis
SUMu001]
gi|308369651|ref|ZP_07418557.2| hypothetical protein TMBG_00738 [Mycobacterium tuberculosis
SUMu002]
gi|308370940|ref|ZP_07423289.2| hypothetical protein TMCG_00287 [Mycobacterium tuberculosis
SUMu003]
gi|308372166|ref|ZP_07427656.2| hypothetical protein TMDG_00669 [Mycobacterium tuberculosis
SUMu004]
gi|308373349|ref|ZP_07431961.2| hypothetical protein TMEG_02559 [Mycobacterium tuberculosis
SUMu005]
gi|308374520|ref|ZP_07436352.2| hypothetical protein TMFG_01153 [Mycobacterium tuberculosis
SUMu006]
gi|308375805|ref|ZP_07668121.1| hypothetical protein TMGG_00749 [Mycobacterium tuberculosis
SUMu007]
gi|308376938|ref|ZP_07668388.1| hypothetical protein TMHG_01381 [Mycobacterium tuberculosis
SUMu008]
gi|308377937|ref|ZP_07480989.2| hypothetical protein TMIG_00859 [Mycobacterium tuberculosis
SUMu009]
gi|308379142|ref|ZP_07485216.2| hypothetical protein TMJG_00453 [Mycobacterium tuberculosis
SUMu010]
gi|308380293|ref|ZP_07489432.2| hypothetical protein TMKG_00453 [Mycobacterium tuberculosis
SUMu011]
gi|308404461|ref|ZP_07493965.2| hypothetical protein TMLG_02678 [Mycobacterium tuberculosis
SUMu012]
gi|385991534|ref|YP_005909832.1| hypothetical protein [Mycobacterium tuberculosis CCDC5180]
gi|13881937|gb|AAK46533.1| DNA polymerase III, epsilon subunit, putative [Mycobacterium
tuberculosis CDC1551]
gi|289694886|gb|EFD62315.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|308215084|gb|EFO74483.1| hypothetical protein TMAG_00380 [Mycobacterium tuberculosis
SUMu001]
gi|308326837|gb|EFP15688.1| hypothetical protein TMBG_00738 [Mycobacterium tuberculosis
SUMu002]
gi|308330190|gb|EFP19041.1| hypothetical protein TMCG_00287 [Mycobacterium tuberculosis
SUMu003]
gi|308334026|gb|EFP22877.1| hypothetical protein TMDG_00669 [Mycobacterium tuberculosis
SUMu004]
gi|308337834|gb|EFP26685.1| hypothetical protein TMEG_02559 [Mycobacterium tuberculosis
SUMu005]
gi|308341594|gb|EFP30445.1| hypothetical protein TMFG_01153 [Mycobacterium tuberculosis
SUMu006]
gi|308345002|gb|EFP33853.1| hypothetical protein TMGG_00749 [Mycobacterium tuberculosis
SUMu007]
gi|308349313|gb|EFP38164.1| hypothetical protein TMHG_01381 [Mycobacterium tuberculosis
SUMu008]
gi|308354021|gb|EFP42872.1| hypothetical protein TMIG_00859 [Mycobacterium tuberculosis
SUMu009]
gi|308357963|gb|EFP46814.1| hypothetical protein TMJG_00453 [Mycobacterium tuberculosis
SUMu010]
gi|308361897|gb|EFP50748.1| hypothetical protein TMKG_00453 [Mycobacterium tuberculosis
SUMu011]
gi|308365560|gb|EFP54411.1| hypothetical protein TMLG_02678 [Mycobacterium tuberculosis
SUMu012]
gi|339298727|gb|AEJ50837.1| hypothetical protein CCDC5180_2000 [Mycobacterium tuberculosis
CCDC5180]
gi|379028469|dbj|BAL66202.1| hypothetical protein ERDMAN_2410 [Mycobacterium tuberculosis str.
Erdman = ATCC 35801]
Length = 637
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 82/204 (40%), Gaps = 31/204 (15%)
Query: 16 VFFDLETTVPRRAGQRF----WVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
V DLETT R G + E GA+ VC + L F+TL+ P+ ++ + R
Sbjct: 36 VVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAV--LGEFATLVNPQH--SIPPQIVR 91
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GIT V +AP + V F V HN FD ++ A P P
Sbjct: 92 LTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNA-GFDIGFLRAAARRCDITWPQPQV 150
Query: 132 MIDSLGVLTEKFGRR------AGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVL----- 179
+ T + RR A ++++A LA F + HR+LDD R ++VL
Sbjct: 151 LC------TMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHALIE 204
Query: 180 ----KHCATVLFLESSLPNTFNSN 199
+ T L S LPN +
Sbjct: 205 RVGNQGVHTYAELRSYLPNVTQAQ 228
>gi|433627308|ref|YP_007260937.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140060008]
gi|432154914|emb|CCK52156.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140060008]
Length = 645
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 82/204 (40%), Gaps = 31/204 (15%)
Query: 16 VFFDLETTVPRRAGQRF----WVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
V DLETT R G + E GA+ VC + L F+TL+ P+ ++ + R
Sbjct: 44 VVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAV--LGEFATLVNPQH--SIPPQIVR 99
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GIT V +AP + V F V HN FD ++ A P P
Sbjct: 100 LTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNA-GFDIGFLRAAARRCDITWPQPQV 158
Query: 132 MIDSLGVLTEKFGRR------AGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVL----- 179
+ T + RR A ++++A LA F + HR+LDD R ++VL
Sbjct: 159 LC------TMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHALIE 212
Query: 180 ----KHCATVLFLESSLPNTFNSN 199
+ T L S LPN +
Sbjct: 213 RVGNQGVHTYAELRSYLPNVTQAQ 236
>gi|408789797|ref|ZP_11201440.1| DinG family ATP-dependent helicase YoaA [Lactobacillus florum 2F]
gi|408520946|gb|EKK20960.1| DinG family ATP-dependent helicase YoaA [Lactobacillus florum 2F]
Length = 925
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 77/147 (52%), Gaps = 8/147 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT AG + +++ A V ++V+ S+ST I D A+ + + GI+ +
Sbjct: 11 DLETTGTSMAG-KARIIQVSASFVQHNQIVD--SYSTYIN--DHVAIPTEITELTGISAQ 65
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
+ +AP F++VA +++ L V+ HN+ FD + +AF G P P+ + +D++
Sbjct: 66 TIMAAPSFDQVAAELYQKLQATVFVAHNV-NFDFPFLNQAFERAGYP-PLTIEAVDTV-T 122
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQK 165
LT+ + ++ L+ +F + +K
Sbjct: 123 LTQILFPTLSSYRLQDLSRHFKIEHRK 149
>gi|300784117|ref|YP_003764408.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32]
gi|384147378|ref|YP_005530194.1| hypothetical protein RAM_11235 [Amycolatopsis mediterranei S699]
gi|399536002|ref|YP_006548664.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei
S699]
gi|299793631|gb|ADJ44006.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32]
gi|340525532|gb|AEK40737.1| hypothetical protein RAM_11235 [Amycolatopsis mediterranei S699]
gi|398316772|gb|AFO75719.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei
S699]
Length = 567
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 74/174 (42%), Gaps = 24/174 (13%)
Query: 16 VFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
V FDLETT P +G + E GA+ V R L F+TL+ P + + +
Sbjct: 23 VVFDLETTGAPPGPSG----ITEIGAVKV--RGGEVLGEFATLVNPG--APIPPQIVSLT 74
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT+ V AP EEV + G V HN FD + ++ A G P
Sbjct: 75 GITQAMVYDAPPIEEVLPAFLEFIGGAVLVAHN-SGFDTSHMRAACEGHGYVWP------ 127
Query: 134 DSLGVLTEKFGRR------AGNMKMATLASYFGL-GQQKHRSLDDVRMNLEVLK 180
+ V T + RR G + LA FG + HR+LDD R ++VL
Sbjct: 128 KATVVCTVRLARRVVPRDEVGRYNLTALALLFGARTRPTHRALDDARATVDVLH 181
>gi|408532903|emb|CCK31077.1| DNA polymerase III subunit epsilon [Streptomyces davawensis JCM
4913]
Length = 327
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 51 ESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ + TL+ P +D V + G+T E +E AP F ++A + L RV HN
Sbjct: 55 DHWYTLVNPERDPGPVWIH-----GLTSEVLEGAPLFPDIAAEFSERLADRVLVAHNA-V 108
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRS 168
FD I +A APV + L+++ G N K+ +LA++FG+ QQ+ H +
Sbjct: 109 FDWQMIAREYARARCEAPVRQRLCTI--ALSKELGLPLPNHKLESLAAHFGVVQQRAHHA 166
Query: 169 LDDVRMNLEVLK 180
LDD R+ E +
Sbjct: 167 LDDARVLAEAFR 178
>gi|404451705|ref|ZP_11016662.1| DNA polymerase III subunit epsilon family exonuclease [Indibacter
alkaliphilus LW1]
gi|403762561|gb|EJZ23616.1| DNA polymerase III subunit epsilon family exonuclease [Indibacter
alkaliphilus LW1]
Length = 454
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 11/116 (9%)
Query: 16 VFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
V D+ETT P + G + E A++ E++ F +LI P+ + +
Sbjct: 4 VIVDIETTGGNPTQGG----ITEIAALLY--ENGQEVDRFHSLINPERFIPGFI--TGLT 55
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVP 129
GI +E V+ +P F E+A+++F L G V+ HN+ FD + I+EAF + G P
Sbjct: 56 GIDQEMVQDSPTFSEIAEELFDFLKGNVFVAHNV-NFDYSFIREAFKKSGFQYDAP 110
>gi|309811312|ref|ZP_07705099.1| exonuclease [Dermacoccus sp. Ellin185]
gi|308434619|gb|EFP58464.1| exonuclease [Dermacoccus sp. Ellin185]
Length = 221
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 12/114 (10%)
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
G++ V AP F ++ D++ +L+GR+ HN FD A + G+ PV
Sbjct: 67 GLSDYDVRDAPGFADLVDELSELLDGRILVAHNA-AFDWAFLAAEARRAGRELPV----- 120
Query: 134 DSLGVLTEKFGRR----AGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHC 182
S + T R N+++ TLA Y+ + + HR+ DDVR+ +EVL+ C
Sbjct: 121 -SERLCTWHLARGLELPTDNLRLGTLAEYWSIPVENAHRAGDDVRVLVEVLRRC 173
>gi|403238050|ref|ZP_10916636.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus sp. 10403023]
Length = 924
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 96/213 (45%), Gaps = 29/213 (13%)
Query: 16 VFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
V DLETT P++ + +++F A+++ +++E F+T + PK + + +
Sbjct: 6 VVVDLETTGNSPKKGDK---IIQFAAVVIEDGEIIE--RFATFVNPK--QDIPIFIEQFT 58
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GI+ E V +AP+F VA +I S+ + HN+ FD + ++E A+ G
Sbjct: 59 GISNEVVANAPDFSIVAPEIISMFKNSYFVAHNV-PFDYSFLQEELAQCG------FENF 111
Query: 134 DSLGVLTEKFGR----RAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVL-------KH 181
L + T + R A + K+ LA L + H++ D + E+L +H
Sbjct: 112 HCLTIDTVELSRVMLPLADSYKLGQLAETLSLPHENPHQADSDAEVTAELLLKILQKIEH 171
Query: 182 CATVLFLE-SSLPNTFNSNLQSSLTVTTRSRSN 213
V + SL N F S+++ L + N
Sbjct: 172 LPLVTIQKLYSLANFFKSDIREILWEIIDDKQN 204
>gi|289578391|ref|YP_003477018.1| DNA polymerase III subunit alpha [Thermoanaerobacter italicus Ab9]
gi|289528104|gb|ADD02456.1| DNA polymerase III, alpha subunit [Thermoanaerobacter italicus Ab9]
Length = 1406
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 11/167 (6%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
E FD+ETT ++E GA+ + K+++ +F T + PK ++ ++
Sbjct: 392 EFTVFDIETTGLSNINDE--IIEIGAVKIKEGKIID--TFETFVNPK--IPISSFITKLT 445
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GI V+ AP EE+ K + V HN FD + IK + V ++
Sbjct: 446 GIDESMVKDAPSIEEILPKFLEFSSNSVLVAHN-ANFDVSFIKSKAKKFN--LNVNNTVL 502
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
D+L L+ + N K+ TLA + + + HR++DD R E+
Sbjct: 503 DTLE-LSRHLYKDLKNYKLDTLAEHLQVKLEHHHRAVDDARATAEIF 548
>gi|419642296|ref|ZP_14174100.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni ATCC 33560]
gi|380625066|gb|EIB43674.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni ATCC 33560]
Length = 253
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+E+T G+ +LE GA+ + K E+ F + +K K++ + GIT E
Sbjct: 76 DIESTGSVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPE---NITELTGITYE 127
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
VE+AP +V L ++ HN+ RFD + I +A E G G++ + +
Sbjct: 128 MVENAPSLTKVLSDFRLFLKDSIFVAHNV-RFDYSFISKALNECG------FGILLNRRI 180
Query: 139 LTEKFGR---RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
T +F + + K+ L + G+ HR+LDD E+ K+C
Sbjct: 181 CTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEIFKYC 227
>gi|404444197|ref|ZP_11009358.1| hypothetical protein MVAC_13261 [Mycobacterium vaccae ATCC 25954]
gi|403654271|gb|EJZ09203.1| hypothetical protein MVAC_13261 [Mycobacterium vaccae ATCC 25954]
Length = 617
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 73/174 (41%), Gaps = 19/174 (10%)
Query: 15 IVFFDLETTVPRRAGQRF-WVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
V DLETT R +G+R + E GA+ V R L F+TL+ P A+ +
Sbjct: 22 FVVVDLETTGGRASGERHDEITEIGAVKV--RGGEVLGEFATLVDPG--RAIPPQIVALT 77
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP E V G V HN FD ++ A P P P +
Sbjct: 78 GITTAMVYDAPRIEAVLPAFLEFCRGAVLVAHNA-GFDIGFLRAAAERHHLPWPKPPVLC 136
Query: 134 DSLGVLTEKFGRR------AGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLK 180
T RR A +++++ LA F G HR+LDD R ++VL
Sbjct: 137 ------TVTLARRVLTRDEAPSVRLSALAQLFRAGTTPTHRALDDARATVDVLH 184
>gi|389821029|ref|ZP_10209965.1| DNA polymerase III subunit epsilon [Planococcus antarcticus DSM
14505]
gi|388462647|gb|EIM05050.1| DNA polymerase III subunit epsilon [Planococcus antarcticus DSM
14505]
Length = 202
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 21/172 (12%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V D ETT R + +++ GA+ + E+ ++ P+ +++ +R GI
Sbjct: 43 VVLDFETTGLRAGSDK--IIQIGAVRYLNHQ--RKETMYMMVNPQ--CSISGTITRITGI 96
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVP-VGMID 134
T VE+AP EEVA ++ + + G HN FD + A EI P+P +ID
Sbjct: 97 TNNDVENAPVIEEVAHELIAFIGGLPIVAHNA-PFDMGFLY-ALEEI---TPIPEYTVID 151
Query: 135 SLGVLTEKFGRRA----GNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
++ K RRA N K+ TL ++ L H +L D + ++C
Sbjct: 152 TV-----KLARRAITQTPNHKLTTLTAFLKLEHDAHDALGDCLATAAIYQYC 198
>gi|325103921|ref|YP_004273575.1| DNA polymerase III subunit epsilon [Pedobacter saltans DSM 12145]
gi|324972769|gb|ADY51753.1| DNA polymerase III, epsilon subunit [Pedobacter saltans DSM 12145]
Length = 459
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 11 GTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
G D+ETT G R + E +I ++VE + TLI PK ++
Sbjct: 3 GRKNYAIVDIETTGAYAGGSR--MTEIAVLIHDGVQVVE--EYHTLINPK--QSIPHYIQ 56
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
GI+ + V APEFE VA K+FS+L +++ HN+ FD + + E G
Sbjct: 57 VLTGISDDMVSDAPEFENVAAKVFSLLQDKIFVAHNV-GFDYSFVHSQLRECG 108
>gi|384439453|ref|YP_005654177.1| DNA-directed DNA polymerase [Thermus sp. CCB_US3_UF1]
gi|359290586|gb|AEV16103.1| DNA-directed DNA polymerase [Thermus sp. CCB_US3_UF1]
Length = 247
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 80/178 (44%), Gaps = 22/178 (12%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELE-----SFSTLIKPKDLSAVALKS 69
+VF DLETT L G V LV LE +F +L++P+ + ++
Sbjct: 73 LVFLDLETTG----------LAPGLHEVIELALVRLEGNRRVAFQSLVRPEHPPSPFIQ- 121
Query: 70 SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVP 129
R GI E +E AP EEV ++ + +L G HN FD ++ A +G P
Sbjct: 122 -RLTGIRAEELEGAPCLEEVLERAYPLLQGATLVLHNA-PFDLGFLRPALEAMGWRLEGP 179
Query: 130 VGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVL 186
V +DS+ L + R + L+ L Q++ HR+LDDV L V+ +L
Sbjct: 180 V--VDSI-PLARRAMRGLKRYGLDALSQVLELPQRREHRALDDVERTLAVVYEVYYML 234
>gi|325282490|ref|YP_004255031.1| DNA polymerase III, epsilon subunit [Deinococcus proteolyticus MRP]
gi|324314299|gb|ADY25414.1| DNA polymerase III, epsilon subunit [Deinococcus proteolyticus MRP]
Length = 185
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 82/185 (44%), Gaps = 26/185 (14%)
Query: 5 IPSQAAGTAEIVFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK-- 60
+P ++ + V FDLETT P R G ++E GA+ + ++V + + TL++P+
Sbjct: 1 MPEKSKWVGDAVVFDLETTGLSPERDG----IVEIGALRIRDGRVVTEDPYQTLVRPQNS 56
Query: 61 --DLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEA 118
+ + ++ R GI+ E V +AP +V + HNI FD ++ A
Sbjct: 57 LGESVTIPWRAERIHGISNEMVVAAPSIAQVLPEFLEWAGDAPLVAHNI-GFDSGFMRAA 115
Query: 119 FAEIG-KPAPVPVGMIDSLGVLTEKFGRRA----GNMKMATLASYFGLG---QQKHRSLD 170
G + AP + T + RRA + +LA GL Q +HRSL
Sbjct: 116 ARHCGLRWAP-------QREICTVQLSRRAFPRERRHNLDSLAGRLGLSFSPQGRHRSLG 168
Query: 171 DVRMN 175
DV +
Sbjct: 169 DVEVT 173
>gi|262170796|ref|ZP_06038474.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451]
gi|261891872|gb|EEY37858.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451]
Length = 247
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 14/180 (7%)
Query: 7 SQAAGTAEIVFFDLETTVPRRAGQRFW----VLEFGAIIVCPRKLVELESFSTLIKPKDL 62
S A IV D ETT R G + ++E GA+ + RKL F +KP
Sbjct: 4 SNNAEYQRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTG-RHFHVYLKPD-- 60
Query: 63 SAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEI 122
+ L++ GIT E + PE+++V D+ + HN FD + FA++
Sbjct: 61 REIQLEAIEVHGITDEFLRDKPEYKDVHDEFLDFIKDAELVAHNA-PFDVGFMDYEFAKL 119
Query: 123 GKPAPVPVG---MIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
G + D+L + F + N+ + L +G+ HR+L ++ E+L
Sbjct: 120 GGSVVKTTDFCKVTDTLAMAKRIFPGKRNNLDI--LCERYGI-DNSHRTLHGALLDAEIL 176
>gi|424842457|ref|ZP_18267082.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Saprospira grandis DSM 2844]
gi|395320655|gb|EJF53576.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Saprospira grandis DSM 2844]
Length = 248
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+VFFDLETT R +++ GAI + P E+++ L+ P+ + +S G
Sbjct: 9 LVFFDLETTGTSIVNDR--IVQIGAIKLFPDGRTEVKN--RLVNPQ--MPIPEGASAVHG 62
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVP 129
I + V +AP+F ++A + L AG+N FD + E FA G P P
Sbjct: 63 IYDKDVVNAPKFRQLAKAFYGWLKDSDLAGYNSDNFDIPMLAEEFARAGMEYPTP 117
>gi|433635258|ref|YP_007268885.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070017]
gi|432166851|emb|CCK64354.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070017]
Length = 645
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 82/204 (40%), Gaps = 31/204 (15%)
Query: 16 VFFDLETTVPRRAGQRF----WVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
V DLETT R G + E GA+ VC + L F+TL+ P+ ++ + R
Sbjct: 44 VVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAV--LGEFATLVNPQ--RSIPPQIVR 99
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GIT V +AP + V F V HN FD ++ A P P
Sbjct: 100 LTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNA-GFDIGFLRAAARRCDITWPQPQV 158
Query: 132 MIDSLGVLTEKFGRR------AGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVL----- 179
+ T + RR A ++++A LA F + HR+LDD R ++VL
Sbjct: 159 LC------TVRLARRVLSRDEAPSVRLAALAQLFAVASNPTHRALDDARATVDVLHALIE 212
Query: 180 ----KHCATVLFLESSLPNTFNSN 199
+ T L S LPN +
Sbjct: 213 RVGNQGVHTYAELRSYLPNATQAQ 236
>gi|229031267|ref|ZP_04187273.1| DNA polymerase III alpha subunit [Bacillus cereus AH1271]
gi|228730025|gb|EEL80999.1| DNA polymerase III alpha subunit [Bacillus cereus AH1271]
Length = 315
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ ++ + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RSIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-QNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA++
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASI 171
>gi|109898663|ref|YP_661918.1| DNA polymerase III subunit epsilon [Pseudoalteromonas atlantica
T6c]
gi|109700944|gb|ABG40864.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica
T6c]
Length = 769
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 15/167 (8%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V D+ETT + G R + E GA+ V K+V+ S+S+LI P+ V +R GI
Sbjct: 605 VVVDVETTGGCKPGHR--ITEIGAVKVIDSKVVD--SWSSLINPE--RRVPHFITRLTGI 658
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
+ + VE AP F EV D + + + ++ HN+ FD K + + + +P
Sbjct: 659 SNDMVEDAPLFCEVIDDLEAFMQDCIFVAHNV-NFDYGFFKLEYGRLERAFSMP-----K 712
Query: 136 LGVLTE--KFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
L + E K+ + + + L+ +GL HR+L D + E+L
Sbjct: 713 LCTVREMRKYYPGSPSYSLGKLSKEYGLSLDNHHRALCDAQAAAELL 759
>gi|392394019|ref|YP_006430621.1| DnaQ family exonuclease/DinG family helicase [Desulfitobacterium
dehalogenans ATCC 51507]
gi|390525097|gb|AFM00828.1| DnaQ family exonuclease/DinG family helicase, putative
[Desulfitobacterium dehalogenans ATCC 51507]
Length = 928
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 90/217 (41%), Gaps = 21/217 (9%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+IV D+ETT ++EF A+ + K E E+FS LI P+ V + R
Sbjct: 5 KIVVVDIETTGFDIYNDE--IIEFAALSIEEGK--EAETFSALISPR--RQVPERILRLT 58
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GI++E + A + DKI ++ + GHN+ FD F E +
Sbjct: 59 GISQEELRQAGSLQTYRDKILNLFQNAIIVGHNV-EFDL-----GFLEHALNIHFENTLW 112
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLG--QQKHRSLDDVRMNLEVLKHCATVLFLESS 191
D+L + T K+ L GL + HR+L D + E+L+ C E
Sbjct: 113 DTLEI-TRILYPNMNKYKLGDLTKSLGLTPLVKAHRALSDAQAAWELLQAC-----WEKG 166
Query: 192 LPNTFNSNLQSSLTVTTRSRSNGKLPCREETSRKSPP 228
L Q +L + SR G L E+T+R+ P
Sbjct: 167 LTLDLGF-YQRALAIAGNSRVTGFLRELEKTTRRKFP 202
>gi|260583570|ref|ZP_05851318.1| DnaQ family exonuclease/DinG family helicase [Granulicatella
elegans ATCC 700633]
gi|260158196|gb|EEW93264.1| DnaQ family exonuclease/DinG family helicase [Granulicatella
elegans ATCC 700633]
Length = 873
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 8/106 (7%)
Query: 19 DLETTVPR-RAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITR 77
DLETT P+ G R + +FG I+ ++V I P+ + + + + G+ +
Sbjct: 9 DLETTGPKFEEGGR--IFQFGCSIIEQGEIVT--QVDLYINPE--TTIPYEIQQLTGVDK 62
Query: 78 EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
+ V+ AP F+EVA IF +L G+ + HNI FD + + E+F E+
Sbjct: 63 KEVKQAPYFDEVASTIFQLLEGKTFVAHNI-SFDYSYLVESFRELA 107
>gi|311746711|ref|ZP_07720496.1| DNA polymerase III, epsilon subunit [Algoriphagus sp. PR1]
gi|126578388|gb|EAZ82552.1| DNA polymerase III, epsilon subunit [Algoriphagus sp. PR1]
Length = 456
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 21/166 (12%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
E D+ETT A + E +I K++E F +LI P+ + +
Sbjct: 2 EFAIVDIETT--GGAASTCGITEIAILIHDGEKVIE--EFESLINPE--QDIPTYITGLT 55
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GI V AP FEE++DK++ +L+GRV+ H++ FD ++ F IG+ V
Sbjct: 56 GIDNSMVSDAPTFEELSDKLWDLLHGRVFVAHSV-NFDYGFVRACFNAIGREFKVDKLCT 114
Query: 134 DSL------GVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVR 173
L G+ + GR K+ LA +HR++ D R
Sbjct: 115 VRLARKIIPGLSSYSLGRICETQKIPILA--------RHRAMGDAR 152
>gi|433644693|ref|YP_007277260.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Mycobacterium smegmatis JS623]
gi|433301413|gb|AGB27230.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Mycobacterium smegmatis JS623]
Length = 193
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 9/147 (6%)
Query: 34 VLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKI 93
VL A+ + P E + TL+ P V + G+T + P + ++AD++
Sbjct: 24 VLSVAALTLTPAATPE-HALHTLLNP----GVDPGPTHVHGLTAAMLAGQPRYADIADQL 78
Query: 94 FSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMA 153
+L+GR+ HN FD A + G A +PV + L ++ ++ +A
Sbjct: 79 APLLHGRILVAHN-AAFDYAFLAAEARRCG--ADLPVADVLCTHELADRLDLGLPSLSLA 135
Query: 154 TLASYFGLGQQK-HRSLDDVRMNLEVL 179
LA+++G+ Q + H +LDD R+ +L
Sbjct: 136 ALAAHWGIQQARPHDALDDARVLAAIL 162
>gi|291450661|ref|ZP_06590051.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
gi|291353610|gb|EFE80512.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
Length = 345
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 70/132 (53%), Gaps = 10/132 (7%)
Query: 51 ESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ + TL+ P +D V + G+T ++ AP F++++D++ + L RV HN
Sbjct: 72 DHWYTLVNPERDPGPVWIH-----GLTTGVLKDAPLFKDISDELSARLADRVLVAHNA-A 125
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRS 168
FD + + +A + APV + L+++ G N K+ +LA++FG+ Q++ H +
Sbjct: 126 FDWSMLAREYARAERVAPVRQRLCTI--ALSKELGLPLPNHKLESLAAHFGVVQERAHHA 183
Query: 169 LDDVRMNLEVLK 180
LDD R+ E +
Sbjct: 184 LDDARVLAEAFR 195
>gi|42782681|ref|NP_979928.1| DNA polymerase III subunit epsilon [Bacillus cereus ATCC 10987]
gi|42738607|gb|AAS42536.1| DNA polymerase III, epsilon subunit, putative [Bacillus cereus ATCC
10987]
Length = 315
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ ++ + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RSIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA++
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASI 171
>gi|423488700|ref|ZP_17465382.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BtB2-4]
gi|423494425|ref|ZP_17471069.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
CER057]
gi|423498785|ref|ZP_17475402.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
CER074]
gi|423661559|ref|ZP_17636728.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VDM022]
gi|401152039|gb|EJQ59480.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
CER057]
gi|401158867|gb|EJQ66256.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
CER074]
gi|401299932|gb|EJS05527.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VDM022]
gi|402433707|gb|EJV65757.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BtB2-4]
Length = 315
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ ++ + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYHNHELVD--QFVSYVNPE--LSIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNNVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA V
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAV 171
>gi|423522593|ref|ZP_17499066.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuA4-10]
gi|401174529|gb|EJQ81737.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuA4-10]
Length = 315
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYHNHELVD--QFVSYVNPE--RPIPSRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLDANVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA V
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAV 171
>gi|384181423|ref|YP_005567185.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324327507|gb|ADY22767.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 315
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ ++ + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RSIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-QNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA++
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASI 171
>gi|229012784|ref|ZP_04169953.1| DNA polymerase III alpha subunit [Bacillus mycoides DSM 2048]
gi|228748465|gb|EEL98321.1| DNA polymerase III alpha subunit [Bacillus mycoides DSM 2048]
Length = 318
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ ++ + +
Sbjct: 12 DYVVIDFETTGFNPYNDK--IIQVAAVKYHNHELVD--QFVSYVNPE--LSIPDRITSLT 65
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 66 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNNVI 123
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA V
Sbjct: 124 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAV 174
>gi|294629410|ref|ZP_06707970.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14]
gi|292832743|gb|EFF91092.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14]
Length = 653
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 18/128 (14%)
Query: 53 FSTLIKPK-DLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFD 111
+STL+ P D V + G+T E + AP FE+VA +I ++L RV HN +FD
Sbjct: 54 YSTLVNPGCDPGPVHIH-----GLTAERLRDAPAFEQVAGRIGALLQDRVMVAHNA-QFD 107
Query: 112 CARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRR----AGNMKMATLASYFGLGQQK-H 166
+ FA PV + + T RR A ++ +A+LA+++G+ Q + H
Sbjct: 108 YDFLAHEFARARLCLPV------NQRLCTLALNRRVEPPAADLSLASLAAHYGVPQTRAH 161
Query: 167 RSLDDVRM 174
+LDD R+
Sbjct: 162 DALDDTRV 169
>gi|374613138|ref|ZP_09685909.1| DNA polymerase III, epsilon subunit [Mycobacterium tusciae JS617]
gi|373546493|gb|EHP73255.1| DNA polymerase III, epsilon subunit [Mycobacterium tusciae JS617]
Length = 339
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 16/135 (11%)
Query: 51 ESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRF 110
+S TL+ P V + G+T E +E P F ++ D + +L GR HN+ F
Sbjct: 59 KSLYTLLNP----GVDPGPTHVHGLTAEMLEGQPRFGDIVDDLIDLLRGRTLVAHNV-GF 113
Query: 111 DCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRR----AGNMKMATLASYFGLGQQK- 165
D + + + P+ M T + RR N+++ TLA+++G+ Q K
Sbjct: 114 DYSFLTAEAEMVDAELPIDTAMC------TVELARRLELGTENLRLETLAAHWGITQLKP 167
Query: 166 HRSLDDVRMNLEVLK 180
H +LDD + ++LK
Sbjct: 168 HDALDDAMVLAQILK 182
>gi|423390188|ref|ZP_17367414.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG1X1-3]
gi|401640566|gb|EJS58297.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG1X1-3]
Length = 315
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYHNHELVD--QFVSYVNPE--RPIPNRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V ++CA +
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQNCAAI 171
>gi|343924173|ref|ZP_08763736.1| DNA polymerase III epsilon subunit [Gordonia alkanivorans NBRC
16433]
gi|343765978|dbj|GAA10662.1| DNA polymerase III epsilon subunit [Gordonia alkanivorans NBRC
16433]
Length = 621
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 81/197 (41%), Gaps = 29/197 (14%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+V DLETT AG R + E GA+ + R + F+TL+ P + + G
Sbjct: 50 LVVVDLETTGSNPAGDR--ITEIGAVKI--RGGEVIGEFATLVDPG--RPIPPQIVTLTG 103
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
IT V AP E V G + HN RFD +++ + P
Sbjct: 104 ITTAMVTDAPRIESVLPSFLEFARGAILVAHNA-RFDMGFLRQNALRLHLDWPF------ 156
Query: 135 SLGVLTEKFGRR------AGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL-------- 179
SL + T RR A +K++ LA F + + HR+LDD R +EV
Sbjct: 157 SLSLCTVTMARRILPRDEAPTVKLSALAELFDVSVRPTHRALDDARATVEVFHRLLERVG 216
Query: 180 -KHCATVLFLESSLPNT 195
+ +TV L S LP T
Sbjct: 217 NQGISTVGELTSYLPRT 233
>gi|419649464|ref|ZP_14180703.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 2008-1025]
gi|380630272|gb|EIB48514.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 2008-1025]
Length = 251
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+E+T G+ +LE GA+ + K E+ F + +K K++ + GIT E
Sbjct: 76 DIESTGGVSKGE---ILEIGAVKIQNYK--EIGRFQSFVKVKEIPE---NITELTGITYE 127
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
VE+AP +V L ++ HN+ RFD + I +A E G G++ + +
Sbjct: 128 MVENAPSLTKVLSDFRLFLKDSIFVAHNV-RFDYSFISKALNECG------FGILLNRRI 180
Query: 139 LTEKFGR---RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
T +F + + K+ L + G+ HR+LDD E+ K+C
Sbjct: 181 CTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEIFKYC 227
>gi|330469366|ref|YP_004407109.1| hypothetical protein VAB18032_27181 [Verrucosispora maris
AB-18-032]
gi|328812337|gb|AEB46509.1| hypothetical protein VAB18032_27181 [Verrucosispora maris
AB-18-032]
Length = 584
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 78/183 (42%), Gaps = 14/183 (7%)
Query: 1 MDGFIPSQAAGTAEIVFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIK 58
+DG P+ V DLETT P G + E GA+ V R EL +TL+
Sbjct: 18 VDGVDPALPLYATTFVVVDLETTGGAPDGGG----ITEIGAVKV--RGGEELGVLATLVN 71
Query: 59 PKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEA 118
P + + GIT + AP E+V ++ V HN +D +K A
Sbjct: 72 PG--VPIPPFITVLTGITEAMLLPAPSIEQVLPSFLEFVSDAVLVAHNA-PYDVGFLKAA 128
Query: 119 FAEIGKPAPVPVGMIDSLGVLTEKFGR-RAGNMKMATLASYF-GLGQQKHRSLDDVRMNL 176
A G P P ++D+ + R N K+ TLA+YF HR+LDD R +
Sbjct: 129 CARHGYRWPNP-RVLDTAALARRVLLRDEVPNRKLGTLAAYFRAATTPTHRALDDARATV 187
Query: 177 EVL 179
+VL
Sbjct: 188 DVL 190
>gi|443293084|ref|ZP_21032178.1| DNA polymerase III polC-type [Micromonospora lupini str. Lupac 08]
gi|385882942|emb|CCH20329.1| DNA polymerase III polC-type [Micromonospora lupini str. Lupac 08]
Length = 584
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 75/168 (44%), Gaps = 14/168 (8%)
Query: 16 VFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
V DLETT P G + E GA+ V R +L +TL+ P + +
Sbjct: 33 VVVDLETTGGAPDGGG----ITEIGAVKV--RGGEQLGELATLVNPG--QPIPPFITVLT 84
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT+ + AP E+V + V HN +D +K A A+ G P P ++
Sbjct: 85 GITQAMLVPAPPIEQVLPSFLEFIADAVLVAHNA-PYDVGFLKAACAKHGHRWPNPR-VL 142
Query: 134 DSLGVLTEKFGR-RAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVL 179
D+ + R N K+ TLA+YF Q HR+LDD + ++VL
Sbjct: 143 DTAALARRVLTRDEVPNRKLGTLAAYFRTATQPTHRALDDAKATVDVL 190
>gi|302561385|ref|ZP_07313727.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
Tu4000]
gi|302479003|gb|EFL42096.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
Tu4000]
Length = 314
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 9/137 (6%)
Query: 45 RKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAG 104
R VE ++T+ +D V + G+T + +E AP F++VA + + L GRV
Sbjct: 37 RGEVEDHWYTTVNPERDPGPVWIH-----GLTSDVLEGAPLFKDVAAEFAARLEGRVLVA 91
Query: 105 HNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQ 164
HN FD I +A APV + L+++ N K+ +LA++FG+ Q+
Sbjct: 92 HNA-VFDWQMIAREYARARGEAPVRQRLCTI--ALSKELKLPLPNHKLESLAAHFGVVQR 148
Query: 165 K-HRSLDDVRMNLEVLK 180
+ H +LDD R+ E +
Sbjct: 149 RAHHALDDARVLAEAFR 165
>gi|424848792|ref|ZP_18273268.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni D2600]
gi|356487948|gb|EHI17886.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni D2600]
Length = 256
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+E+T G+ +LE GA+ + K E+ F + +K K++ + GIT E
Sbjct: 76 DIESTGGVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPK---NITELTGITYE 127
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
VE+AP +V L ++ HN+R FD + I +A E G G++ + +
Sbjct: 128 MVENAPSLAKVLSDFRLFLKDSIFVAHNVR-FDYSFISKALNECG------FGILLNRRI 180
Query: 139 LTEKFGR---RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
T +F + + K+ L + G+ HR+LDD E+ K+C
Sbjct: 181 CTIEFAQCCIESPKYKLEVLKEFLGVENMHHRALDDALAAAEIFKYC 227
>gi|433631308|ref|YP_007264936.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070010]
gi|432162901|emb|CCK60293.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070010]
Length = 645
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 82/204 (40%), Gaps = 31/204 (15%)
Query: 16 VFFDLETTVPRRAGQRF----WVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
V DLETT R G + E GA+ VC + L F+TL+ P+ ++ + R
Sbjct: 44 VVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAV--LGEFATLVNPQH--SIPPQIVR 99
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GIT V +AP + V F V HN FD ++ A P P
Sbjct: 100 LTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNA-GFDIGFLRAAARRCDITWPQPQV 158
Query: 132 MIDSLGVLTEKFGRR------AGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVL----- 179
+ T + RR A ++++A LA F + HR+LDD R ++VL
Sbjct: 159 LC------TMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHALIE 212
Query: 180 ----KHCATVLFLESSLPNTFNSN 199
+ T L S LPN +
Sbjct: 213 RVGNQGVHTYAELRSYLPNVTQAQ 236
>gi|423418508|ref|ZP_17395597.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG3X2-1]
gi|401105114|gb|EJQ13081.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG3X2-1]
Length = 315
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYHNHELVD--QFVSYVNPE--RPIPNRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V ++CA +
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQNCAAI 171
>gi|315504521|ref|YP_004083408.1| DNA polymerase III, subunit epsilon [Micromonospora sp. L5]
gi|315411140|gb|ADU09257.1| DNA polymerase III, epsilon subunit [Micromonospora sp. L5]
Length = 584
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 14/168 (8%)
Query: 16 VFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
V DLETT P G + E GA+ V R EL +TL+ P + +
Sbjct: 33 VVVDLETTGGAPDGGG----ITEIGAVKV--RGGEELGVLATLVNPG--VPIPPFITVLT 84
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT+ + AP E+V ++ V HN +D +K A A+ G P P ++
Sbjct: 85 GITQAMLLPAPPIEQVLPSFLEFISDAVLVAHNA-PYDVGFLKAACAKHGYRWPNPR-VL 142
Query: 134 DSLGVLTEKFGR-RAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVL 179
D+ + R N K+ TLA+YF Q HR+LDD + ++VL
Sbjct: 143 DTAALARRVLTRDEVPNRKLGTLAAYFRTATQPTHRALDDAKATVDVL 190
>gi|429738227|ref|ZP_19272041.1| exonuclease [Prevotella saccharolytica F0055]
gi|429160676|gb|EKY03130.1| exonuclease [Prevotella saccharolytica F0055]
Length = 284
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
++ FDLETT G R +++ I V P E E L+ P ++ ++ S+ G
Sbjct: 9 LIIFDLETTGLDLVGDR--IIQISYIKVNPDGKEEREDL--LVNPS--KSIPIEVSKLTG 62
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
IT E V SAP FE +A + ++ G +AG N FD + E F G
Sbjct: 63 ITNEQVASAPTFEGLASHLQNVFKGCDFAGFNSNHFDIPMLAEEFLRAG 111
>gi|357020105|ref|ZP_09082340.1| DNA polymerase III subunit epsilon [Mycobacterium thermoresistibile
ATCC 19527]
gi|356480141|gb|EHI13274.1| DNA polymerase III subunit epsilon [Mycobacterium thermoresistibile
ATCC 19527]
Length = 309
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 19/166 (11%)
Query: 20 LETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREA 79
+ETT R R ++ A+ V VE S +TL+ P V + G+T +
Sbjct: 1 METTGFRPGQAR--IVSIAALAVGDDGNVE-RSVATLLNP----GVDPGPTHIHGLTADM 53
Query: 80 VESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVL 139
+ P+F ++ D + IL GR HN+ FD A + I P IDS+ +
Sbjct: 54 LAGQPQFADIVDDLIDILRGRTLVAHNV-AFDYAFLVAEAELIDAELP-----IDSV-MC 106
Query: 140 TEKFGRR----AGNMKMATLASYFGLGQ-QKHRSLDDVRMNLEVLK 180
T + RR N+++ TLA+++G+ Q + H +LDD + ++LK
Sbjct: 107 TIELARRMQLGTENLRLETLAAHWGVTQLRAHDALDDALVLTQILK 152
>gi|422532683|ref|ZP_16608629.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA1]
gi|313791823|gb|EFS39934.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA1]
Length = 597
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 73/172 (42%), Gaps = 13/172 (7%)
Query: 13 AEIVF--FDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
+E+ F DLETT Q + E GA+ VC + VE E F TL+ P +
Sbjct: 28 SEVTFCVVDLETTGTSEGSQ---ITEIGAVKVCGGR-VEGE-FQTLVCPT--GPIPASVQ 80
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
GIT V SAP V HN RFD ++ A+A+ P P
Sbjct: 81 VLTGITHAMVRSAPSLSAVLPSWLEFSRSTALVAHNA-RFDIGFLQRAYAQHDYPWGDP- 138
Query: 131 GMIDSLGVLTEKFGR-RAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLK 180
++D+L + R N K++TL+ F HR+L D R ++VL
Sbjct: 139 AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTPSHRALADARATVDVLH 190
>gi|310641367|ref|YP_003946125.1| DNA polymerase iii, epsilon subunit [Paenibacillus polymyxa SC2]
gi|386040409|ref|YP_005959363.1| hypothetical protein PPM_1719 [Paenibacillus polymyxa M1]
gi|309246317|gb|ADO55884.1| DNA polymerase III, epsilon subunit [Paenibacillus polymyxa SC2]
gi|343096447|emb|CCC84656.1| hypothetical protein PPM_1719 [Paenibacillus polymyxa M1]
Length = 245
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 14 EIVFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
E V FDLETT + G +L FGAI V ++E E F TL+ P+ + + + +R
Sbjct: 59 ETVVFDLETTGFSAQHGDE--ILSFGAIRVVGDVIMEKEQFYTLVNPR--TEIPEQITRL 114
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGH 105
GITRE + AP S + GRV H
Sbjct: 115 TGITREMTDGAPPLMNGLHDFMSFVGGRVLVAH 147
>gi|419653276|ref|ZP_14184254.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 2008-872]
gi|419665430|ref|ZP_14195499.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1997-7]
gi|419681259|ref|ZP_14210102.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 140-16]
gi|419686980|ref|ZP_14215397.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1798]
gi|380632797|gb|EIB50847.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 2008-872]
gi|380643534|gb|EIB60757.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1997-7]
gi|380658649|gb|EIB74654.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 140-16]
gi|380663236|gb|EIB78890.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1798]
Length = 253
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+E+T G+ +LE GA+ + K E+ F + +K K++ + GIT E
Sbjct: 76 DIESTGGVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPK---NITELTGITYE 127
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
VE+AP +V L ++ HN+R FD + I +A E G G++ + +
Sbjct: 128 MVENAPSLAKVLSDFRLFLKDSIFVAHNVR-FDYSFISKALNECG------FGILLNRRI 180
Query: 139 LTEKFGR---RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
T +F + + K+ L + G+ HR+LDD E+ K+C
Sbjct: 181 CTIEFAQCCIESPKYKLEVLKEFLGVENMHHRALDDALAAAEIFKYC 227
>gi|407941896|ref|YP_006857536.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni PT14]
gi|419640661|ref|ZP_14172585.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 23357]
gi|419661527|ref|ZP_14191851.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 2008-831]
gi|419677175|ref|ZP_14206332.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 87330]
gi|380619144|gb|EIB38236.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 23357]
gi|380639870|gb|EIB57339.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 2008-831]
gi|380654989|gb|EIB71324.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 87330]
gi|407905734|gb|AFU42563.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni PT14]
Length = 251
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+E+T G+ +LE GA+ + K E+ F + +K K++ + GIT E
Sbjct: 76 DIESTGGVSKGE---ILEIGAVKIQNYK--EIGRFQSFVKVKEIPE---NITELTGITYE 127
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
VE+AP +V L ++ HN+ RFD + I +A E G G++ + +
Sbjct: 128 MVENAPSLTKVLSDFRLFLKDSIFVAHNV-RFDYSFISKALNECG------FGILLNRRI 180
Query: 139 LTEKFGR---RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
T +F + + K+ L + G+ HR+LDD E+ K+C
Sbjct: 181 CTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEIFKYC 227
>gi|419629598|ref|ZP_14162318.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 60004]
gi|419639240|ref|ZP_14171275.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 86605]
gi|419657980|ref|ZP_14188619.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1997-1]
gi|380607517|gb|EIB27374.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 60004]
gi|380616926|gb|EIB36113.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 86605]
gi|380633897|gb|EIB51816.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1997-1]
Length = 253
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+E+T G+ +LE GA+ + K E+ F + +K K++ + GIT E
Sbjct: 76 DIESTGGVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPK---NITELTGITYE 127
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
VE+AP +V L ++ HN+R FD + I +A E G G++ + +
Sbjct: 128 MVENAPSLAKVLSDFRLFLKDSIFVAHNVR-FDYSFISKALNECG------FGILLNRRI 180
Query: 139 LTEKFGR---RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
T +F + + K+ L + G+ HR+LDD E+ K+C
Sbjct: 181 CTIEFAQCCIESPKYKLEVLKEFLGVENMHHRALDDALAAAEIFKYC 227
>gi|228986699|ref|ZP_04146829.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228773030|gb|EEM21466.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 315
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ ++ + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RSIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA++
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASI 171
>gi|422537681|ref|ZP_16613569.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL078PA1]
gi|315080369|gb|EFT52345.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL078PA1]
Length = 597
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 73/172 (42%), Gaps = 13/172 (7%)
Query: 13 AEIVF--FDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
+E+ F DLETT Q + E GA+ VC + VE E F TL+ P +
Sbjct: 28 SEVTFCVVDLETTGTSEGSQ---ITEIGAVKVCGGR-VEGE-FQTLVCPT--GPIPASVQ 80
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
GIT V SAP V HN RFD ++ A+A+ P P
Sbjct: 81 VLTGITHAMVRSAPSLSAVLPSWLEFSRSTALVAHNA-RFDIGFLQRAYAQHDYPWGDP- 138
Query: 131 GMIDSLGVLTEKFGR-RAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLK 180
++D+L + R N K++TL+ F HR+L D R ++VL
Sbjct: 139 AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTPSHRALADARATVDVLH 190
>gi|422552557|ref|ZP_16628348.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA3]
gi|314990240|gb|EFT34331.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA3]
Length = 604
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 73/172 (42%), Gaps = 13/172 (7%)
Query: 13 AEIVF--FDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
+E+ F DLETT Q + E GA+ VC + VE E F TL+ P +
Sbjct: 35 SEVTFCVVDLETTGTSEGSQ---ITEIGAVKVCGGR-VEGE-FQTLVCPT--GPIPASVQ 87
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
GIT V SAP V HN RFD ++ A+A+ P P
Sbjct: 88 VLTGITHAMVRSAPSLSAVLPSWLEFSRSTALVAHNA-RFDIGFLQRAYAQHDYPWGDP- 145
Query: 131 GMIDSLGVLTEKFGR-RAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLK 180
++D+L + R N K++TL+ F HR+L D R ++VL
Sbjct: 146 AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTPSHRALADARATVDVLH 197
>gi|392940949|ref|ZP_10306593.1| DNA polymerase III, alpha chain [Thermoanaerobacter siderophilus
SR4]
gi|392292699|gb|EIW01143.1| DNA polymerase III, alpha chain [Thermoanaerobacter siderophilus
SR4]
Length = 1407
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 15/177 (8%)
Query: 7 SQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVA 66
++A E FD+ETT ++E GA+ + K+++ +F T + PK +
Sbjct: 386 TEATLEDEFTVFDIETTGLSNINDE--IIEIGAVKIKEGKIID--TFETFVNPK----IP 437
Query: 67 LKS--SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGK 124
+ S ++ GI V+ AP EE+ K + V HN FD + IK +
Sbjct: 438 ISSFITKLTGIDESMVKDAPSIEEILPKFLEFASNSVLVAHNA-NFDVSFIKSKAKKFN- 495
Query: 125 PAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLK 180
V ++D+L L+ + N K+ TLA + + + HR++DD E+ K
Sbjct: 496 -LNVNNAVLDTLE-LSRHLYKDLKNYKLDTLADHLQVKLEHHHRAVDDAMATAEIFK 550
>gi|422385212|ref|ZP_16465347.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
acnes HL096PA3]
gi|327332247|gb|EGE73984.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
acnes HL096PA3]
Length = 584
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 73/172 (42%), Gaps = 13/172 (7%)
Query: 13 AEIVF--FDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
+E+ F DLETT Q + E GA+ VC + VE E F TL+ P +
Sbjct: 15 SEVTFCVVDLETTGTSEGSQ---ITEIGAVKVCGGR-VEGE-FQTLVCPT--GPIPASVQ 67
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
GIT V SAP V HN RFD ++ A+A+ P P
Sbjct: 68 VLTGITHAMVRSAPSLSTVLPSWLEFSRSTALVAHNA-RFDIGFLQRAYAQHDYPWGDP- 125
Query: 131 GMIDSLGVLTEKFGR-RAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLK 180
++D+L + R N K++TL+ F HR+L D R ++VL
Sbjct: 126 AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTPSHRALADARATVDVLH 177
>gi|422498827|ref|ZP_16575099.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA3]
gi|315085964|gb|EFT57940.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA3]
Length = 584
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 73/172 (42%), Gaps = 13/172 (7%)
Query: 13 AEIVF--FDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
+E+ F DLETT Q + E GA+ VC + VE E F TL+ P +
Sbjct: 15 SEVTFCVVDLETTGTSEGSQ---ITEIGAVKVCGGR-VEGE-FQTLVCPT--GPIPASVQ 67
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
GIT V SAP V HN RFD ++ A+A+ P P
Sbjct: 68 VLTGITHAMVRSAPSLSAVLPSWLEFSRSTALVAHNA-RFDIGFLQRAYAQHDYPWGDP- 125
Query: 131 GMIDSLGVLTEKFGR-RAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLK 180
++D+L + R N K++TL+ F HR+L D R ++VL
Sbjct: 126 AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTPSHRALADARATVDVLH 177
>gi|359144498|ref|ZP_09178451.1| DNA polymerase III subunit epsilon [Streptomyces sp. S4]
gi|421738209|ref|ZP_16176576.1| DNA polymerase III, epsilon subunit [Streptomyces sp. SM8]
gi|406693373|gb|EKC97027.1| DNA polymerase III, epsilon subunit [Streptomyces sp. SM8]
Length = 324
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 70/132 (53%), Gaps = 10/132 (7%)
Query: 51 ESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ + TL+ P +D V + G+T ++ AP F++++D++ + L RV HN
Sbjct: 51 DHWYTLVNPERDPGPVWIH-----GLTTGVLKDAPLFKDISDELSARLADRVLVAHNA-A 104
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRS 168
FD + + +A + APV + L+++ G N K+ +LA++FG+ Q++ H +
Sbjct: 105 FDWSMLAREYARAERVAPVRQRLCTI--ALSKELGLPLPNHKLESLAAHFGVVQERAHHA 162
Query: 169 LDDVRMNLEVLK 180
LDD R+ E +
Sbjct: 163 LDDARVLAEAFR 174
>gi|289426896|ref|ZP_06428622.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J165]
gi|295130296|ref|YP_003580959.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Propionibacterium acnes SK137]
gi|335051814|ref|ZP_08544722.1| GIY-YIG catalytic domain protein [Propionibacterium sp. 409-HC1]
gi|342211299|ref|ZP_08704024.1| exonuclease [Propionibacterium sp. CC003-HC2]
gi|365973613|ref|YP_004955172.1| hypothetical protein TIA2EST2_03570 [Propionibacterium acnes
TypeIA2 P.acn33]
gi|407935102|ref|YP_006850744.1| hypothetical protein PAC1_03745 [Propionibacterium acnes C1]
gi|417929334|ref|ZP_12572718.1| exonuclease [Propionibacterium acnes SK182]
gi|419420932|ref|ZP_13961160.1| hypothetical protein TICEST70_07027 [Propionibacterium acnes
PRP-38]
gi|422424170|ref|ZP_16501120.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL043PA1]
gi|422435423|ref|ZP_16512280.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL083PA2]
gi|422448757|ref|ZP_16525482.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA3]
gi|422492989|ref|ZP_16569289.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL086PA1]
gi|422502640|ref|ZP_16578885.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL027PA2]
gi|422515935|ref|ZP_16592044.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA2]
gi|422518294|ref|ZP_16594362.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL074PA1]
gi|422524714|ref|ZP_16600723.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL053PA2]
gi|422529392|ref|ZP_16605358.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL053PA1]
gi|422545743|ref|ZP_16621573.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL082PA1]
gi|422549361|ref|ZP_16625161.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA1]
gi|289159985|gb|EFD08163.1| GIY-YIG catalytic domain protein [Propionibacterium acnes J165]
gi|291376452|gb|ADE00307.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Propionibacterium acnes SK137]
gi|313772552|gb|EFS38518.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL074PA1]
gi|313802090|gb|EFS43322.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL110PA2]
gi|313838422|gb|EFS76136.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL086PA1]
gi|314918505|gb|EFS82336.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA1]
gi|314925502|gb|EFS89333.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA3]
gi|314963121|gb|EFT07221.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL082PA1]
gi|314973624|gb|EFT17720.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL053PA1]
gi|315077585|gb|EFT49643.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL053PA2]
gi|315084628|gb|EFT56604.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL027PA2]
gi|327447777|gb|EGE94431.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL043PA1]
gi|327453554|gb|EGF00209.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL083PA2]
gi|333765718|gb|EGL43053.1| GIY-YIG catalytic domain protein [Propionibacterium sp. 409-HC1]
gi|340766843|gb|EGR89368.1| exonuclease [Propionibacterium sp. CC003-HC2]
gi|340773457|gb|EGR95949.1| exonuclease [Propionibacterium acnes SK182]
gi|365743612|gb|AEW78809.1| hypothetical protein TIA2EST2_03570 [Propionibacterium acnes
TypeIA2 P.acn33]
gi|379977423|gb|EIA10748.1| hypothetical protein TICEST70_07027 [Propionibacterium acnes
PRP-38]
gi|407903683|gb|AFU40513.1| hypothetical protein PAC1_03745 [Propionibacterium acnes C1]
Length = 584
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 73/172 (42%), Gaps = 13/172 (7%)
Query: 13 AEIVF--FDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
+E+ F DLETT Q + E GA+ VC + VE E F TL+ P +
Sbjct: 15 SEVTFCVVDLETTGTSEGSQ---ITEIGAVKVCGGR-VEGE-FQTLVCPT--GPIPASVQ 67
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
GIT V SAP V HN RFD ++ A+A+ P P
Sbjct: 68 VLTGITHAMVRSAPSLSAVLPSWLEFSRSTALVAHNA-RFDIGFLQRAYAQHDYPWGDP- 125
Query: 131 GMIDSLGVLTEKFGR-RAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLK 180
++D+L + R N K++TL+ F HR+L D R ++VL
Sbjct: 126 AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTPSHRALADARATVDVLH 177
>gi|86153724|ref|ZP_01071927.1| DNA polymerase III polC-type [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|121612917|ref|YP_001000159.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 81-176]
gi|167005117|ref|ZP_02270875.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 81-176]
gi|419617643|ref|ZP_14151214.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 129-258]
gi|419669142|ref|ZP_14198937.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1997-11]
gi|85842685|gb|EAQ59897.1| DNA polymerase III polC-type [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|87250067|gb|EAQ73025.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 81-176]
gi|380596950|gb|EIB17623.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 129-258]
gi|380647936|gb|EIB64821.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1997-11]
Length = 253
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+E+T G+ +LE GA+ + K E+ F + +K K++ + GIT E
Sbjct: 76 DIESTGGVSKGE---ILEIGAVKIQNSK--EIARFQSFVKVKEIPE---NITELTGITYE 127
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
VE+AP +V L ++ HN+ RFD + I A E G G++ + +
Sbjct: 128 MVENAPSLAKVLSDFRLFLKDSIFVAHNV-RFDYSFISRALNECG------FGILLNRRI 180
Query: 139 LTEKFGR---RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
T +F + + K+ L + G+ HR+LDD E+ K+C
Sbjct: 181 CTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEIFKYC 227
>gi|422474440|ref|ZP_16550904.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL056PA1]
gi|422506586|ref|ZP_16582809.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA2]
gi|422547510|ref|ZP_16623326.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA3]
gi|313823175|gb|EFS60889.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA2]
gi|313833843|gb|EFS71557.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL056PA1]
gi|314919771|gb|EFS83602.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL050PA3]
Length = 604
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 73/172 (42%), Gaps = 13/172 (7%)
Query: 13 AEIVF--FDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
+E+ F DLETT Q + E GA+ VC + VE E F TL+ P +
Sbjct: 35 SEVTFCVVDLETTGTSEGSQ---ITEIGAVKVCGGR-VEGE-FQTLVCPT--GPIPASVQ 87
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
GIT V SAP V HN RFD ++ A+A+ P P
Sbjct: 88 VLTGITHAMVRSAPSLSAVLPSWLEFSRSTALVAHNA-RFDIGFLQRAYAQHDYPWGDP- 145
Query: 131 GMIDSLGVLTEKFGR-RAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLK 180
++D+L + R N K++TL+ F HR+L D R ++VL
Sbjct: 146 AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTPSHRALADARATVDVLH 197
>gi|157414745|ref|YP_001482001.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 81116]
gi|384441101|ref|YP_005657404.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni M1]
gi|415747597|ref|ZP_11476128.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Campylobacter jejuni subsp. jejuni 327]
gi|419634878|ref|ZP_14167202.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 55037]
gi|157385709|gb|ABV52024.1| exonuclease, possibly dna polymerase III epsilon subunit
[Campylobacter jejuni subsp. jejuni 81116]
gi|307747384|gb|ADN90654.1| DNA polymerase III, epsilon subunit [Campylobacter jejuni subsp.
jejuni M1]
gi|315931109|gb|EFV10083.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Campylobacter jejuni subsp. jejuni 327]
gi|380613924|gb|EIB33382.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 55037]
Length = 253
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+E+T G+ +LE GA+ + K E+ F + +K K++ + GIT E
Sbjct: 76 DIESTGGVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPE---NITELTGITYE 127
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
VE+AP +V L ++ HN+ RFD + I +A E G G++ + +
Sbjct: 128 MVENAPSLAKVLSDFRLFLKDSIFVAHNV-RFDYSFISKALNECG------FGILLNRRI 180
Query: 139 LTEKFGR---RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
T +F + + K+ L + G+ HR+LDD E+ K+C
Sbjct: 181 CTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEIFKYC 227
>gi|386000501|ref|YP_005918800.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
CTRI-2]
gi|344221548|gb|AEN02179.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
CTRI-2]
Length = 329
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 16/134 (11%)
Query: 51 ESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRF 110
+S +L+ PK V + G+T ++ P+F ++A ++ +L GR HN+ F
Sbjct: 49 QSVVSLLNPK----VDPGPTHVHGLTAAMLDGQPQFADIAGEVADVLRGRTLVAHNV-AF 103
Query: 111 DCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRR----AGNMKMATLASYFGLGQQK- 165
D A + PV M T + RR N+++ TLA+++G+ QQ+
Sbjct: 104 DYAFLAAEAEIAEAELPVDFVMC------TVELARRLQLGVDNLRLETLAAHWGVPQQRP 157
Query: 166 HRSLDDVRMNLEVL 179
H + DDVR+ +L
Sbjct: 158 HDAFDDVRVLTGIL 171
>gi|422568975|ref|ZP_16644593.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA2]
gi|314960311|gb|EFT04413.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA2]
Length = 604
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 73/172 (42%), Gaps = 13/172 (7%)
Query: 13 AEIVF--FDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
+E+ F DLETT Q + E GA+ VC + VE E F TL+ P +
Sbjct: 35 SEVTFCVVDLETTGTSEGSQ---ITEIGAVKVCGGR-VEGE-FQTLVCPT--GPIPASVQ 87
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
GIT V SAP V HN RFD ++ A+A+ P P
Sbjct: 88 VLTGITHAMVRSAPSLSAVLPSWLEFSRSTALVAHNA-RFDIGFLQRAYAQHDYPWGDP- 145
Query: 131 GMIDSLGVLTEKFGR-RAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLK 180
++D+L + R N K++TL+ F HR+L D R ++VL
Sbjct: 146 AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTPSHRALADARATVDVLH 197
>gi|333895631|ref|YP_004469506.1| DNA polymerase III subunit epsilon [Alteromonas sp. SN2]
gi|332995649|gb|AEF05704.1| DNA polymerase III, epsilon subunit [Alteromonas sp. SN2]
Length = 710
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 7/114 (6%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V D+ETT + R + E G + + ++V+ ++ TLI P+ + +R GI
Sbjct: 544 VVVDIETTGGNNSYNR--ITEIGMVKIVAGEVVD--TYQTLINPQ--RRIPATITRLTGI 597
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVP 129
+ + V AP F EVA++I S + V+ HN+ FD IK+ FA + P P
Sbjct: 598 SDDMVADAPLFVEVAERIASFTDEAVFVAHNV-NFDYGFIKQEFARLELPFKRP 650
>gi|384442785|ref|YP_005659037.1| Exonuclease, possibly dna polymerase III epsilon subunit
[Campylobacter jejuni subsp. jejuni S3]
gi|419644822|ref|ZP_14176394.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 9081]
gi|419659745|ref|ZP_14190261.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 2008-979]
gi|419688415|ref|ZP_14216739.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1854]
gi|424846866|ref|ZP_18271458.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni NW]
gi|315057872|gb|ADT72201.1| Exonuclease, possibly dna polymerase III epsilon subunit
[Campylobacter jejuni subsp. jejuni S3]
gi|356485790|gb|EHI15778.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni NW]
gi|380621311|gb|EIB40122.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 9081]
gi|380638696|gb|EIB56234.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 2008-979]
gi|380665686|gb|EIB81250.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1854]
Length = 256
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+E+T G+ +LE GA+ + K E+ F + +K K++ + GIT E
Sbjct: 76 DIESTGGVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPE---NITELTGITYE 127
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
VE+AP +V L ++ HN+ RFD + I +A E G G++ + +
Sbjct: 128 MVENAPSLTKVLSDFRLFLKDSIFVAHNV-RFDYSFISKALNECG------FGILLNRRI 180
Query: 139 LTEKFGR---RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
T +F + + K+ L + G+ HR+LDD E+ K+C
Sbjct: 181 CTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEIFKYC 227
>gi|354606695|ref|ZP_09024665.1| hypothetical protein HMPREF1003_01232 [Propionibacterium sp.
5_U_42AFAA]
gi|386023682|ref|YP_005941985.1| hypothetical protein PAZ_c07700 [Propionibacterium acnes 266]
gi|422388172|ref|ZP_16468275.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
acnes HL096PA2]
gi|422428399|ref|ZP_16505310.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA1]
gi|422461569|ref|ZP_16538193.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL038PA1]
gi|422477763|ref|ZP_16554186.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL007PA1]
gi|422480318|ref|ZP_16556721.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL063PA1]
gi|422482812|ref|ZP_16559201.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA1]
gi|422496087|ref|ZP_16572374.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL025PA1]
gi|422513063|ref|ZP_16589186.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA2]
gi|422539768|ref|ZP_16615641.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL013PA1]
gi|422556487|ref|ZP_16632241.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL025PA2]
gi|422563382|ref|ZP_16639059.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL046PA1]
gi|313764773|gb|EFS36137.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL013PA1]
gi|313807207|gb|EFS45694.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA2]
gi|313813245|gb|EFS50959.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL025PA1]
gi|313820015|gb|EFS57729.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL036PA1]
gi|313825546|gb|EFS63260.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL063PA1]
gi|313830622|gb|EFS68336.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL007PA1]
gi|315096369|gb|EFT68345.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL038PA1]
gi|315101083|gb|EFT73059.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL046PA1]
gi|327325880|gb|EGE67670.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
acnes HL096PA2]
gi|328753125|gb|EGF66741.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA1]
gi|328759130|gb|EGF72746.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL025PA2]
gi|332675138|gb|AEE71954.1| hypothetical protein PAZ_c07700 [Propionibacterium acnes 266]
gi|353556810|gb|EHC26179.1| hypothetical protein HMPREF1003_01232 [Propionibacterium sp.
5_U_42AFAA]
Length = 587
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 73/172 (42%), Gaps = 13/172 (7%)
Query: 13 AEIVF--FDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
+E+ F DLETT Q + E GA+ VC + VE E F TL+ P +
Sbjct: 18 SEVTFCVVDLETTGTSEGSQ---ITEIGAVKVCGGR-VEGE-FQTLVCPT--GPIPASVQ 70
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
GIT V SAP V HN RFD ++ A+A+ P P
Sbjct: 71 VLTGITHAMVRSAPSLSAVLPSWLEFSRSTALVAHNA-RFDIGFLQRAYAQHDYPWGDP- 128
Query: 131 GMIDSLGVLTEKFGR-RAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLK 180
++D+L + R N K++TL+ F HR+L D R ++VL
Sbjct: 129 AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTPSHRALADARATVDVLH 180
>gi|183983226|ref|YP_001851517.1| hypothetical protein MMAR_3235 [Mycobacterium marinum M]
gi|183176552|gb|ACC41662.1| conserved hypothetical protein [Mycobacterium marinum M]
Length = 674
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 77/177 (43%), Gaps = 26/177 (14%)
Query: 16 VFFDLETTVPRRAGQRF----WVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
V DLETT R G + E GA+ V R V L F+TL+ P+ ++ + R
Sbjct: 58 VVVDLETTGGRATGTEASPPDAITEIGAVKV--RGGVILGEFATLVDPQ--RSIPPQIVR 113
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFA--EIGKPAPVP 129
GIT + AP + V F + V HN FD ++ A +I P
Sbjct: 114 LTGITTAMLCDAPTIDSVLPMFFEFVGNSVLVAHNAG-FDIGFLRAAAGRCDIAWPG--- 169
Query: 130 VGMIDSLGVLTEKFGRR------AGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVL 179
S + T + RR A ++++A LA F + Q HR+LDD R +EVL
Sbjct: 170 -----SKVLCTVRLARRVLSREEAPSVRLAALARLFSVATQPTHRALDDARATVEVL 221
>gi|423401633|ref|ZP_17378806.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG2X1-2]
gi|423477729|ref|ZP_17454444.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG6X1-1]
gi|401653011|gb|EJS70562.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG2X1-2]
gi|402429364|gb|EJV61450.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG6X1-1]
Length = 315
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ ++ + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RSIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-QNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA++
Sbjct: 121 DTV-FLAKKYMKYAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASI 171
>gi|422396121|ref|ZP_16476152.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
acnes HL097PA1]
gi|422431317|ref|ZP_16508196.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL072PA2]
gi|422432883|ref|ZP_16509751.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL059PA2]
gi|422485714|ref|ZP_16562076.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL043PA2]
gi|422488960|ref|ZP_16565289.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL013PA2]
gi|422526950|ref|ZP_16602940.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL083PA1]
gi|422561291|ref|ZP_16636978.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA1]
gi|422579002|ref|ZP_16654526.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA4]
gi|313809712|gb|EFS47433.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL083PA1]
gi|314915265|gb|EFS79096.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA4]
gi|314978176|gb|EFT22270.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL072PA2]
gi|314983574|gb|EFT27666.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA1]
gi|315098227|gb|EFT70203.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL059PA2]
gi|327330574|gb|EGE72320.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
acnes HL097PA1]
gi|327442625|gb|EGE89279.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL013PA2]
gi|327445348|gb|EGE92002.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL043PA2]
Length = 597
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 73/172 (42%), Gaps = 13/172 (7%)
Query: 13 AEIVF--FDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
+E+ F DLETT Q + E GA+ VC + VE E F TL+ P +
Sbjct: 28 SEVTFCVVDLETTGTSEGSQ---ITEIGAVKVCGGR-VEGE-FQTLVCPT--GPIPASVQ 80
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
GIT V SAP V HN RFD ++ A+A+ P P
Sbjct: 81 VLTGITHAMVRSAPSLSAVLPSWLEFSRSTALVAHNA-RFDIGFLQRAYAQHDYPWGDP- 138
Query: 131 GMIDSLGVLTEKFGR-RAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLK 180
++D+L + R N K++TL+ F HR+L D R ++VL
Sbjct: 139 AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTPSHRALADARATVDVLH 190
>gi|422554511|ref|ZP_16630283.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA2]
gi|314987763|gb|EFT31854.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL005PA2]
Length = 587
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 75/172 (43%), Gaps = 13/172 (7%)
Query: 13 AEIVF--FDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
+E+ F DLETT Q + E GA+ VC + VE E F TL+ P +++
Sbjct: 18 SEVTFCVVDLETTGTSEGSQ---ITEIGAVKVCGGR-VEGE-FQTLVCPTGPIPASVQV- 71
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
GIT V SAP V HN RFD ++ A+A+ P P
Sbjct: 72 -LTGITHAMVRSAPSLSAVLPSWLEFSRSTALVAHNA-RFDIGFLQRAYAQHDYPWGDP- 128
Query: 131 GMIDSLGVLTEKFGR-RAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLK 180
++D+L + R N K++TL+ F HR+L D R ++VL
Sbjct: 129 AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTPSHRALADARATVDVLH 180
>gi|332983437|ref|YP_004464878.1| DNA polymerase III subunit epsilon [Mahella australiensis 50-1 BON]
gi|332701115|gb|AEE98056.1| DNA polymerase III, epsilon subunit [Mahella australiensis 50-1
BON]
Length = 296
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 12/180 (6%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
E V DLETT A + ++E A+ ++++ S++TLI P + +S+ +
Sbjct: 121 EFVAIDLETTGLNPAIDK--IVEIAAVKFKYGEIID--SYTTLINPG--IHIPSSASKIN 174
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
IT E V AP+ EV + + + + HN FD +K A++G P I
Sbjct: 175 HITDETVHGAPDLSEVLPNLLNFIGDSILVMHN-ASFDLKFLKYHAAKLGYDISNP--FI 231
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQK--HRSLDDVRMNLEVLKHCATVLFLESS 191
D+L + F N ++AT+A+Y + HR+ +D + VL C ESS
Sbjct: 232 DTLPTCKKLFTDFE-NYQLATVANYLKISTADTFHRACNDAEICGPVLIKCIDTAKNESS 290
>gi|114319829|ref|YP_741512.1| PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
gi|114226223|gb|ABI56022.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
Length = 719
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 93/206 (45%), Gaps = 17/206 (8%)
Query: 16 VFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
V FD ETT P R + ++ GA+ + ++++ E F L+KP A+ ++R
Sbjct: 525 VVFDTETTGLSPARGDE---IIAIGAVRLVNGRVLQDEYFEQLVKP--CRAIPDSATRFH 579
Query: 74 GITREAVESAPEFEEVADKIFSILNGR--VWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GI+ E V APE V + FS G V HN FD ++ A A G P PV
Sbjct: 580 GISNEDVARAPEIGPVL-RAFSRFIGEESVLVAHNA-AFDMGFLRRAQARAGLAFPQPV- 636
Query: 132 MIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHCATVLFLES 190
+D+L +L+ + + + +A G+ Q++H +L D R+ +V +L
Sbjct: 637 -LDTL-LLSVYLHDHSPDHTLEGVAERLGVEVQKRHSALADARVTADVFARMIPLLRERG 694
Query: 191 SLPNTFNSNLQSSLTVTTRSRSNGKL 216
+ T +Q+S V T R +
Sbjct: 695 VV--TLGQAIQASEQVVTVRREQARF 718
>gi|365962435|ref|YP_004944001.1| hypothetical protein TIA2EST36_03615 [Propionibacterium acnes
TypeIA2 P.acn31]
gi|365964677|ref|YP_004946242.1| hypothetical protein TIA2EST22_03650 [Propionibacterium acnes
TypeIA2 P.acn17]
gi|422542566|ref|ZP_16618416.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA1]
gi|314968043|gb|EFT12142.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA1]
gi|365739116|gb|AEW83318.1| hypothetical protein TIA2EST36_03615 [Propionibacterium acnes
TypeIA2 P.acn31]
gi|365741358|gb|AEW81052.1| hypothetical protein TIA2EST22_03650 [Propionibacterium acnes
TypeIA2 P.acn17]
Length = 584
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 73/172 (42%), Gaps = 13/172 (7%)
Query: 13 AEIVF--FDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
+E+ F DLETT Q + E GA+ VC + VE E F TL+ P +
Sbjct: 15 SEVTFCVVDLETTGTSEGSQ---ITEIGAVKVCGGR-VEGE-FQTLVCPT--GPIPASVQ 67
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
GIT V SAP V HN RFD ++ A+A+ P P
Sbjct: 68 VLTGITHAMVRSAPSLSAVLPSWLEFSRSTALVAHNA-RFDIGFLQRAYAQHDYPWGDP- 125
Query: 131 GMIDSLGVLTEKFGR-RAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLK 180
++D+L + R N K++TL+ F HR+L D R ++VL
Sbjct: 126 AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTPSHRALADARATVDVLH 177
>gi|456739492|gb|EMF64031.1| hypothetical protein TIA1EST31_03737 [Propionibacterium acnes
FZ1/2/0]
Length = 584
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 73/172 (42%), Gaps = 13/172 (7%)
Query: 13 AEIVF--FDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
+E+ F DLETT Q + E GA+ VC + VE E F TL+ P +
Sbjct: 15 SEVTFCVVDLETTGTSEGSQ---ITEIGAVKVCGGR-VEGE-FQTLVCPT--GPIPASVQ 67
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
GIT V SAP V HN RFD ++ A+A+ P P
Sbjct: 68 VLTGITHAMVRSAPSLSAVLPSWLEFSRSTALVAHNA-RFDIGFLQRAYAQHDYPWGDP- 125
Query: 131 GMIDSLGVLTEKFGR-RAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLK 180
++D+L + R N K++TL+ F HR+L D R ++VL
Sbjct: 126 AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTPSHRALADARATVDVLH 177
>gi|403250856|ref|ZP_10917242.1| DNA polymerase III, alpha subunit (gram-positive type)
[actinobacterium SCGC AAA027-L06]
gi|402915805|gb|EJX36742.1| DNA polymerase III, alpha subunit (gram-positive type)
[actinobacterium SCGC AAA027-L06]
Length = 211
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 84/174 (48%), Gaps = 18/174 (10%)
Query: 16 VFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
V DLETT P++ + E GA+ V + V++ F+T + P L+A+ +
Sbjct: 11 VVVDLETTGASPKKGAA---ITEIGAVKV--KGGVQIGEFATFVNP--LAAIPAYITEMT 63
Query: 74 GITREAVESAPEFEEVADKIFSILNGR----VWAGHNIRRFDCARIKEAFAEIGKPAPVP 129
GIT + AP +EV F GR V HN FD + +K A +E+ P
Sbjct: 64 GITDLMLAHAPVIDEVFPS-FIEFAGREDHAVIVAHN-APFDLSFLKNAASELEISWP-K 120
Query: 130 VGMIDSLGVLTEKFGRR-AGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLKH 181
+D++ + + + N K++TLA++FG + HR+LDD + E+L +
Sbjct: 121 YKTLDTVTIARQILTKEDVPNCKLSTLATFFGTKTEPNHRALDDAKATTEILHN 174
>gi|383820044|ref|ZP_09975304.1| hypothetical protein MPHLEI_11974 [Mycobacterium phlei RIVM601174]
gi|383335864|gb|EID14285.1| hypothetical protein MPHLEI_11974 [Mycobacterium phlei RIVM601174]
Length = 620
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 76/175 (43%), Gaps = 25/175 (14%)
Query: 16 VFFDLETTVPRRAGQRF-WVLEFGAIIVCPRKLVELESFSTLIKP-KDL--SAVALKSSR 71
V DLETT R +G+R + E GA+ V R L +TL+ P +D+ VAL
Sbjct: 27 VVVDLETTGGRASGERADAITEIGAVKV--RGGEVLGELATLVDPGRDIPPQIVALT--- 81
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GIT V AP E V G V HN FD ++ A P P P
Sbjct: 82 --GITTAMVCDAPRIESVLPAFLEFSRGAVLVAHNA-GFDIGFLRAAAERCQLPWPRPPV 138
Query: 132 MIDSLGVLTEKFGRR------AGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVL 179
+ T K RR A ++++A LA FG HR+LDD R ++VL
Sbjct: 139 LC------TVKLARRVLTRDEAPSVRLAELARLFGASTTPTHRALDDARATVDVL 187
>gi|419627765|ref|ZP_14160658.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 23263]
gi|380606222|gb|EIB26143.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 23263]
Length = 253
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+E+T G+ +LE GA+ + K E+ F + +K K++ + GIT E
Sbjct: 76 DIESTGGVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPE---NITELTGITYE 127
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
VE+AP +V L ++ HN+ RFD + I +A E G G++ + +
Sbjct: 128 MVENAPSLTKVLSDFRLFLKDSIFVAHNV-RFDYSFISKALNECG------FGILLNRRI 180
Query: 139 LTEKFGR---RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
T +F + + K+ L + G+ HR+LDD E+ K+C
Sbjct: 181 CTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEIFKYC 227
>gi|423458293|ref|ZP_17435090.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG5X2-1]
gi|401147190|gb|EJQ54697.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG5X2-1]
Length = 315
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ ++ + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RSIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA++
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAVVYQKCASI 171
>gi|357392585|ref|YP_004907426.1| putative DNA polymerase III subunit epsilon [Kitasatospora setae
KM-6054]
gi|311899062|dbj|BAJ31470.1| putative DNA polymerase III subunit epsilon [Kitasatospora setae
KM-6054]
Length = 329
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 51 ESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ + TL+ P +D V + G+T E + AP F EVA + L RV HN
Sbjct: 57 DHWYTLVNPQRDPGPVWIH-----GLTSEVLAGAPTFPEVAAEFAERLRDRVLVAHNA-L 110
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQ-QKHRS 168
FD I F+ G APV + VL N K+++LA++F + Q Q H +
Sbjct: 111 FDWNMISREFSRAGLRAPVEQRLCTM--VLARDLRLPLPNGKLSSLAAHFDVRQRQAHHA 168
Query: 169 LDDVRMNLEVLK 180
LDD R+ EV +
Sbjct: 169 LDDARVLAEVFR 180
>gi|229018800|ref|ZP_04175648.1| DNA polymerase III alpha subunit [Bacillus cereus AH1273]
gi|229025042|ref|ZP_04181470.1| DNA polymerase III alpha subunit [Bacillus cereus AH1272]
gi|228736248|gb|EEL86815.1| DNA polymerase III alpha subunit [Bacillus cereus AH1272]
gi|228742492|gb|EEL92644.1| DNA polymerase III alpha subunit [Bacillus cereus AH1273]
Length = 315
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYHNHELVD--QFVSYVNPE--RPIPNRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPFFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V ++CA +
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQNCAAI 171
>gi|419651297|ref|ZP_14182397.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 2008-894]
gi|380631427|gb|EIB49621.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 2008-894]
Length = 253
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+E+T G+ +LE GA+ + K E+ F + +K K++ + GIT E
Sbjct: 76 DIESTGGVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPE---NITELTGITYE 127
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
VE+AP +V L ++ HN+ RFD + I +A E G G++ + +
Sbjct: 128 MVENAPSLTKVLSDFRLFLKDSIFVAHNV-RFDYSFISKALNECG------FGILLNRRI 180
Query: 139 LTEKFGR---RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
T +F + + K+ L + G+ HR+LDD E+ K+C
Sbjct: 181 CTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEIFKYC 227
>gi|422437763|ref|ZP_16514607.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL092PA1]
gi|327452827|gb|EGE99481.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL092PA1]
Length = 587
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 73/172 (42%), Gaps = 13/172 (7%)
Query: 13 AEIVF--FDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
+E+ F DLETT Q + E GA+ VC + VE E F TL+ P +
Sbjct: 18 SEVTFCVVDLETTGTSEGSQ---ITEIGAVKVCGGR-VEGE-FQTLVCPT--GPIPASVQ 70
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
GIT V SAP V HN RFD ++ A+A+ P P
Sbjct: 71 VLTGITHAMVRSAPSLSAVLPSWLEFSRSTALVAHNA-RFDIGFLQRAYAQHDYPWGDP- 128
Query: 131 GMIDSLGVLTEKFGR-RAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLK 180
++D+L + R N K++TL+ F HR+L D R ++VL
Sbjct: 129 AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTPSHRALADARATVDVLH 180
>gi|422452161|ref|ZP_16528862.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL030PA2]
gi|315108203|gb|EFT80179.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL030PA2]
Length = 584
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 73/172 (42%), Gaps = 13/172 (7%)
Query: 13 AEIVF--FDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
+E+ F DLETT Q + E GA+ VC + VE E F TL+ P +
Sbjct: 15 SEVTFCVVDLETTGTSEGSQ---ITEIGAVKVCGGR-VEGE-FQTLVCPT--GPIPASVQ 67
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
GIT V SAP V HN RFD ++ A+A+ P P
Sbjct: 68 VLTGITHAMVRSAPSLSAVLPSWLEFSRSTALVAHNA-RFDIGFLQRAYAQHDYPWGDP- 125
Query: 131 GMIDSLGVLTEKFGR-RAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLK 180
++D+L + R N K++TL+ F HR+L D R ++VL
Sbjct: 126 AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTPSHRALADARATVDVLH 177
>gi|399031334|ref|ZP_10731368.1| exonuclease, DNA polymerase III, epsilon subunit family
[Flavobacterium sp. CF136]
gi|398070323|gb|EJL61628.1| exonuclease, DNA polymerase III, epsilon subunit family
[Flavobacterium sp. CF136]
Length = 462
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
E D+ETT +G R + E II +++ + TL+ P+ + L
Sbjct: 5 EYAIVDIETTGGNASGSR--ITEIAIIIHNGTSVID--RWETLVNPE--KEIPLPIFALT 58
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
GI E V+SAP F+++++K+ +L GR++ HN+ FD + ++ E G
Sbjct: 59 GINNEMVKSAPVFDDISEKVLQMLTGRIFVAHNV-NFDYSFVRHQLEEAG 107
>gi|419682159|ref|ZP_14210898.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1213]
gi|380661842|gb|EIB77710.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1213]
Length = 253
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+E+T G+ +LE GA+ + K E+ F + +K K++ + GIT E
Sbjct: 76 DIESTGGVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPE---NITELTGITYE 127
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
VE+AP +V L ++ HN+ RFD + I +A E G G++ + +
Sbjct: 128 MVENAPSLTKVLSDFRLFLKDSIFVAHNV-RFDYSFISKALNECG------FGILLNRRI 180
Query: 139 LTEKFGR---RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
T +F + + K+ L + G+ HR+LDD E+ K+C
Sbjct: 181 CTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEIFKYC 227
>gi|365134462|ref|ZP_09343288.1| DNA polymerase III, alpha subunit, Gram-positive type
[Subdoligranulum sp. 4_3_54A2FAA]
gi|363614038|gb|EHL65541.1| DNA polymerase III, alpha subunit, Gram-positive type
[Subdoligranulum sp. 4_3_54A2FAA]
Length = 1442
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 80/182 (43%), Gaps = 21/182 (11%)
Query: 1 MDGFIP-----SQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFST 55
+D +P + A + V FDLETT A + E GA++V ++ E S+++
Sbjct: 388 VDDMVPVVYGAATGAMSQSFVVFDLETTGLSPA--DCAITEIGAVVVENGEITE--SYNS 443
Query: 56 LIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARI 115
+ P + + ++ IT E V AP EE ++GRV HN FD +
Sbjct: 444 FVNPG--CHIPEEITKITNITDEMVADAPGQEEALRAFLEFVDGRVLIAHNAHGFDIRFL 501
Query: 116 KEAFAEIGKPAPVPVG--MIDSLGVLTEKF-GRRAGNMKMATLASYFGLGQ-QKHRSLDD 171
K G VP G ID+L + + G R N K+ T+ Y + Q HR+ DD
Sbjct: 502 KACAERYG----VPFGNTYIDTLPLAQALYLGLR--NYKLDTIGKYLEIPPFQHHRACDD 555
Query: 172 VR 173
+
Sbjct: 556 AK 557
>gi|422507802|ref|ZP_16583983.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL046PA2]
gi|313818253|gb|EFS55967.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL046PA2]
Length = 597
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 73/172 (42%), Gaps = 13/172 (7%)
Query: 13 AEIVF--FDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
+E+ F DLETT Q + E GA+ VC + VE E F TL+ P +
Sbjct: 28 SEVTFCVVDLETTGTSEGSQ---ITEIGAVKVCGGR-VEGE-FQTLVCPT--GPIPASVQ 80
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
GIT V SAP V HN RFD ++ A+A+ P P
Sbjct: 81 VLTGITHAMVRSAPSLSAVLPSWLEFSRSTALVAHNA-RFDIGFLQRAYAQHDYPWGDP- 138
Query: 131 GMIDSLGVLTEKFGR-RAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLK 180
++D+L + R N K++TL+ F HR+L D R ++VL
Sbjct: 139 AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTPSHRALADARATVDVLH 190
>gi|422393413|ref|ZP_16473466.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
acnes HL099PA1]
gi|422443241|ref|ZP_16520039.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA1]
gi|422445403|ref|ZP_16522150.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL027PA1]
gi|422454750|ref|ZP_16531430.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA3]
gi|422491054|ref|ZP_16567369.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL020PA1]
gi|422510959|ref|ZP_16587105.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL059PA1]
gi|422521558|ref|ZP_16597588.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL045PA1]
gi|422534040|ref|ZP_16609964.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL072PA1]
gi|422569632|ref|ZP_16645239.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL067PA1]
gi|313815838|gb|EFS53552.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL059PA1]
gi|314931784|gb|EFS95615.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL067PA1]
gi|314956043|gb|EFT00441.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL027PA1]
gi|314958449|gb|EFT02552.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL002PA1]
gi|314976217|gb|EFT20312.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL045PA1]
gi|315088618|gb|EFT60594.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL072PA1]
gi|327451091|gb|EGE97745.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL087PA3]
gi|328753779|gb|EGF67395.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL020PA1]
gi|328760388|gb|EGF73957.1| putative DNA polymerase III, epsilon subunit [Propionibacterium
acnes HL099PA1]
Length = 590
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 73/172 (42%), Gaps = 13/172 (7%)
Query: 13 AEIVF--FDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
+E+ F DLETT Q + E GA+ VC + VE E F TL+ P +
Sbjct: 21 SEVTFCVVDLETTGTSEGSQ---ITEIGAVKVCGGR-VEGE-FQTLVCPT--GPIPASVQ 73
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
GIT V SAP V HN RFD ++ A+A+ P P
Sbjct: 74 VLTGITHAMVRSAPSLSAVLPSWLEFSRSTALVAHNA-RFDIGFLQRAYAQHDYPWGDP- 131
Query: 131 GMIDSLGVLTEKFGR-RAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLK 180
++D+L + R N K++TL+ F HR+L D R ++VL
Sbjct: 132 AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTPSHRALADARATVDVLH 183
>gi|311064734|ref|YP_003971459.1| DNA polymerase III subunit alpha [Bifidobacterium bifidum PRL2010]
gi|313141038|ref|ZP_07803231.1| DNA polymerase III subunit epsilon [Bifidobacterium bifidum NCIMB
41171]
gi|390937270|ref|YP_006394829.1| DNA polymerase III polC-type [Bifidobacterium bifidum BGN4]
gi|421734921|ref|ZP_16173965.1| DNA polymerase III polC-type [Bifidobacterium bifidum LMG 13195]
gi|421737064|ref|ZP_16175756.1| DNA polymerase III polC-type [Bifidobacterium bifidum IPLA 20015]
gi|310867053|gb|ADP36422.1| DnaQ DNA polymerase III alpha subunit [Bifidobacterium bifidum
PRL2010]
gi|313133548|gb|EFR51165.1| DNA polymerase III subunit epsilon [Bifidobacterium bifidum NCIMB
41171]
gi|389890883|gb|AFL04950.1| DNA polymerase III polC-type [Bifidobacterium bifidum BGN4]
gi|407077146|gb|EKE50008.1| DNA polymerase III polC-type [Bifidobacterium bifidum LMG 13195]
gi|407295648|gb|EKF15338.1| DNA polymerase III polC-type [Bifidobacterium bifidum IPLA 20015]
Length = 180
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 17/172 (9%)
Query: 2 DGFIPSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKP-K 60
DG +P + V DLETT + R ++EFGA+ V RK V+ ++ L+ P +
Sbjct: 4 DGTLPD------DYVVLDLETT--GVSWYRDTIIEFGAVKVVDRKPVD--TYQQLVNPMR 53
Query: 61 DLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFA 120
+L+ + + GIT + +E AP + V GHNI +FD I A
Sbjct: 54 NLNPFITQLT---GITPDMLEPAPTLDTVLPDFLRWCGDDAMIGHNIMQFDIKFIDLAAQ 110
Query: 121 EIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDD 171
I A VP +ID+L ++ + ++ L F + ++HR+L D
Sbjct: 111 RILHHA-VPNRIIDTLQ-MSRSMYPQYNRHRLVDLIQRFDIADVEEHRALSD 160
>gi|406677781|ref|ZP_11084961.1| DNA polymerase III, epsilon subunit [Aeromonas veronii AMC35]
gi|404623588|gb|EKB20438.1| DNA polymerase III, epsilon subunit [Aeromonas veronii AMC35]
Length = 244
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 110/256 (42%), Gaps = 35/256 (13%)
Query: 16 VFFDLETTVPRRAGQRFW----VLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
+ D ETT AG + ++E G + V RKL + IKP L V ++ +
Sbjct: 10 IILDTETTGMNTAGGPVYLGHRIIEIGCVEVINRKLTG-NHYHVYIKPDRL--VDPEAIQ 66
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG---KPAPV 128
GIT E + P F ++AD+ + G HN FD + + F+++G K A +
Sbjct: 67 VHGITDEFLRDKPSFSQIADEFLEFIRGAELIAHNA-PFDVSFMDYEFSKLGLNFKTADI 125
Query: 129 PVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFL 188
+ D+L + + F + N+ + L +G+ HR+L ++ E+L A V L
Sbjct: 126 -CTITDTLAMARDLFPGKRNNLDV--LCDRYGI-DNSHRTLHGALLDAEIL---ADVYLL 178
Query: 189 ESSLPNTFNSNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQRSAVPYTR--TSLG 246
+ Q+ L + T S N E+++ + L R A+ R T +
Sbjct: 179 MTG--------GQTKLNLATESNEN-------ESNQDTSIRRLESNRPALKVVRASTEVQ 223
Query: 247 KMTESVKNLLCKSQGS 262
+ E+ +L+ K GS
Sbjct: 224 VLHEARLDLVQKKGGS 239
>gi|403386829|ref|ZP_10928886.1| DNA polymerase III PolC [Clostridium sp. JC122]
Length = 1375
Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 45/174 (25%), Positives = 81/174 (46%), Gaps = 11/174 (6%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+IV FDLETT + + ++E GA+ V ++V+ F+ + P ++ K +
Sbjct: 362 DIVVFDLETT--GFSSENDSIIEIGAVKVRDNQIVD--RFNEFVNPN--KSIPYKITELT 415
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT + V+ A E V K + + A HN FD + IK +I ++
Sbjct: 416 GITNDMVKDADPIESVLPKFLEFVGDSMVAAHNAP-FDTSFIKSNCKKIN--VEFKNSIM 472
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHCATVL 186
D++ + F K+ T+ + G+ + HR++DD + E++ HC +L
Sbjct: 473 DTIPLAKFLFPDLK-RYKLNTICKHIGISLENHHRAVDDAKATAEIVLHCLEML 525
>gi|419693867|ref|ZP_14221847.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 9872]
gi|380671945|gb|EIB87136.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 9872]
Length = 253
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+E+T G+ +LE GA+ + K E+ F + +K K++ + GIT E
Sbjct: 76 DIESTGGVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPE---NITELTGITYE 127
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
VE+AP +V L ++ HN+ RFD + I +A E G G++ + +
Sbjct: 128 MVENAPSLAKVLSDFRLFLKDSIFVAHNV-RFDYSFISKALNECG------FGILLNRRI 180
Query: 139 LTEKFGR---RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
T +F + + K+ L + G+ HR+LDD E+ K+C
Sbjct: 181 CTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEIFKYC 227
>gi|422500997|ref|ZP_16577251.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL063PA2]
gi|313827785|gb|EFS65499.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL063PA2]
Length = 590
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 73/172 (42%), Gaps = 13/172 (7%)
Query: 13 AEIVF--FDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
+E+ F DLETT Q + E GA+ VC + VE E F TL+ P +
Sbjct: 21 SEVTFCVVDLETTGTSEGSQ---ITEIGAVKVCGGR-VEGE-FQTLVCPT--GPIPASVQ 73
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
GIT V SAP V HN RFD ++ A+A+ P P
Sbjct: 74 VLTGITHAMVRSAPSLSAVLPSWLEFSRSTALVAHNA-RFDIGFLQRAYAQHDYPWGDP- 131
Query: 131 GMIDSLGVLTEKFGR-RAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLK 180
++D+L + R N K++TL+ F HR+L D R ++VL
Sbjct: 132 AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTPSHRALADARATVDVLH 183
>gi|30263558|ref|NP_845935.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Ames]
gi|47528957|ref|YP_020306.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. 'Ames
Ancestor']
gi|49186408|ref|YP_029660.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Sterne]
gi|65320888|ref|ZP_00393847.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
[Bacillus anthracis str. A2012]
gi|165871011|ref|ZP_02215662.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0488]
gi|167636474|ref|ZP_02394772.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0442]
gi|167640607|ref|ZP_02398869.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0193]
gi|170688408|ref|ZP_02879616.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0465]
gi|170708125|ref|ZP_02898572.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0389]
gi|177652488|ref|ZP_02934955.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0174]
gi|190565123|ref|ZP_03018044.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. Tsiankovskii-I]
gi|229603113|ref|YP_002867802.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. A0248]
gi|254686178|ref|ZP_05150037.1| DNA polymerase III subunit epsilon [Bacillus anthracis str.
CNEVA-9066]
gi|254726056|ref|ZP_05187838.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. A1055]
gi|254738651|ref|ZP_05196354.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Western
North America USA6153]
gi|254744791|ref|ZP_05202469.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Kruger
B]
gi|254752968|ref|ZP_05205004.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Vollum]
gi|254759240|ref|ZP_05211266.1| DNA polymerase III subunit epsilon [Bacillus anthracis str.
Australia 94]
gi|386737364|ref|YP_006210545.1| DNA polymerase III subunit alpha [Bacillus anthracis str. H9401]
gi|421637204|ref|ZP_16077802.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. BF1]
gi|30258193|gb|AAP27421.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. Ames]
gi|47504105|gb|AAT32781.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. 'Ames Ancestor']
gi|49180335|gb|AAT55711.1| DNA polymerase III, epsilon subunit, putative [Bacillus anthracis
str. Sterne]
gi|164713222|gb|EDR18748.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0488]
gi|167511475|gb|EDR86859.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0193]
gi|167528133|gb|EDR90925.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0442]
gi|170126933|gb|EDS95813.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0389]
gi|170667578|gb|EDT18333.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0465]
gi|172082162|gb|EDT67229.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0174]
gi|190564440|gb|EDV18404.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. Tsiankovskii-I]
gi|229267521|gb|ACQ49158.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0248]
gi|384387216|gb|AFH84877.1| DNA polymerase III alpha subunit [Bacillus anthracis str. H9401]
gi|403396000|gb|EJY93238.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. BF1]
Length = 315
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + PK + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPK--RPIPDRIMSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA++
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASI 171
>gi|323339821|ref|ZP_08080090.1| ATP-dependent helicase DinG [Lactobacillus ruminis ATCC 25644]
gi|417974108|ref|ZP_12614932.1| ATP-dependent helicase DinG [Lactobacillus ruminis ATCC 25644]
gi|323092694|gb|EFZ35297.1| ATP-dependent helicase DinG [Lactobacillus ruminis ATCC 25644]
gi|346329563|gb|EGX97858.1| ATP-dependent helicase DinG [Lactobacillus ruminis ATCC 25644]
Length = 968
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 17/152 (11%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLE T G +++F + K+V +FSTLI P L + IT +
Sbjct: 44 DLEMTGTNPNGSE-RLIQFSCVFTEGNKIVN--TFSTLINP--LRKIPEDVQNLTNITDK 98
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+SAP F+EVA I+++L+ V+ HNI D + F IG P +D G+
Sbjct: 99 DVKSAPTFDEVAGTIYALLSDTVFVAHNI-ELDYRFLNSEFERIGFPK------LDLEGI 151
Query: 139 LTEKFGRRA----GNMKMATLASYFGLGQQKH 166
T + + A + ++ LA + G + KH
Sbjct: 152 DTVQLAQIAFPTLASYRLGDLAHFLGF-KHKH 182
>gi|284991755|ref|YP_003410309.1| DNA polymerase III subunit epsilon [Geodermatophilus obscurus DSM
43160]
gi|284065000|gb|ADB75938.1| DNA polymerase III, epsilon subunit [Geodermatophilus obscurus DSM
43160]
Length = 609
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 75/174 (43%), Gaps = 18/174 (10%)
Query: 13 AEIVFF--DLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALK 68
AE+ F DLETT P+ + + E GA+ V R L F TL+ P +
Sbjct: 35 AEVTFVVVDLETTGGSPKDSA----ITEIGAVKV--RGGEVLGEFQTLVDPG--CEIPPY 86
Query: 69 SSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPV 128
S GIT V +AP V G V HN FD +K A A G P P
Sbjct: 87 ISVLTGITSTMVAAAPRIGAVLPHFLEFARGAVLVAHNA-PFDLGFLKAACAANGIPWPA 145
Query: 129 PVGMIDSLGVLTEKFGRR--AGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVL 179
+D+ VL + R N K+ATLA YF + HR+L D R ++VL
Sbjct: 146 -TASVDT-AVLARRLLSRDEVPNCKLATLAPYFRTSTEPCHRALADARATVDVL 197
>gi|118478852|ref|YP_896003.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis str. Al
Hakam]
gi|196038559|ref|ZP_03105868.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
NVH0597-99]
gi|196044683|ref|ZP_03111918.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
03BB108]
gi|225865592|ref|YP_002750970.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
03BB102]
gi|229092581|ref|ZP_04223732.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-42]
gi|229185845|ref|ZP_04313018.1| DNA polymerase III alpha subunit [Bacillus cereus BGSC 6E1]
gi|376267505|ref|YP_005120217.1| DNA polymerase III subunit alpha [Bacillus cereus F837/76]
gi|118418077|gb|ABK86496.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis str. Al
Hakam]
gi|196024718|gb|EDX63390.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
03BB108]
gi|196030967|gb|EDX69565.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
NVH0597-99]
gi|225789766|gb|ACO29983.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
03BB102]
gi|228597557|gb|EEK55204.1| DNA polymerase III alpha subunit [Bacillus cereus BGSC 6E1]
gi|228690734|gb|EEL44510.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-42]
gi|364513305|gb|AEW56704.1| DNA polymerase III alpha subunit [Bacillus cereus F837/76]
Length = 315
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEPQN-KVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ +L +K+ + A N K+ TL G+ H + DD V + CA++
Sbjct: 121 DTV-LLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASI 171
>gi|339498539|ref|ZP_08659515.1| Rad3-related DNA helicase [Leuconostoc pseudomesenteroides KCTC
3652]
Length = 797
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 24/194 (12%)
Query: 16 VFFDLETTVPRRA-GQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
V DLETT A G R +++ G + RK+V+ F + + P L + + +
Sbjct: 8 VVLDLETTGQSVAKGGR--IIQIGMTFIRQRKIVD--HFESFVNPGQL--IDRQIQQLTH 61
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
I+++ V+ AP F+E+A + S+L+ V HNI FD + + F G P + + ID
Sbjct: 62 ISQKDVQHAPYFDEIAPMLQSLLSDAVIIAHNI-NFDYPYLNDEFERTGFPV-LQIPAID 119
Query: 135 SLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHCATVLFLE---- 189
++ L + A ++ L +Y + HR+ D H +LFLE
Sbjct: 120 TVQ-LAQILLPTAPGYRLLDLTTYLDINLVNAHRANADA--------HATALLFLEMWRR 170
Query: 190 -SSLPNTFNSNLQS 202
LP+ LQ+
Sbjct: 171 AEQLPSVVLQQLQT 184
>gi|419698217|ref|ZP_14225938.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 23211]
gi|380675836|gb|EIB90727.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 23211]
Length = 253
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+E+T G+ +LE GA+ + K E+ F + +K K++ + GIT E
Sbjct: 76 DIESTGGVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPE---NITELTGITYE 127
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
VE+AP +V L ++ HN+ RFD + I +A E G G++ + +
Sbjct: 128 MVENAPSLAKVLSDFRLFLKDSIFVAHNV-RFDYSFISKALNECG------FGILLNRRI 180
Query: 139 LTEKFGR---RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
T +F + + K+ L + G+ HR+LDD E+ K+C
Sbjct: 181 CTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEIFKYC 227
>gi|343491450|ref|ZP_08729838.1| DNA polymerase III PolC [Mycoplasma columbinum SF7]
gi|343128763|gb|EGV00556.1| DNA polymerase III PolC [Mycoplasma columbinum SF7]
Length = 1457
Score = 51.2 bits (121), Expect = 5e-04, Method: Composition-based stats.
Identities = 45/128 (35%), Positives = 68/128 (53%), Gaps = 13/128 (10%)
Query: 14 EIVFFDLETT-VPRRAGQRFWVLEFGAIIVCPR-KLVELESFSTLIKPKD-LSAVALKSS 70
E V FD+ETT + R G+ V+E+GA+ V ++ E F IK K LS+ ++
Sbjct: 422 EYVAFDIETTSLFPRFGE---VIEYGAVKVTQSLRIDNKEQF--FIKAKQPLSSF---TT 473
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
GIT + +E ++ D+I+S LN ++ HN RFD +KE F + KP P
Sbjct: 474 NLTGITNKMLEDGKNIQDALDEIYSSLNNKIAIAHNA-RFDYHFLKEQFFKYNKPFP-KF 531
Query: 131 GMIDSLGV 138
+ID+L V
Sbjct: 532 AVIDTLKV 539
>gi|404215637|ref|YP_006669832.1| Nuclease subunit of the excinuclease complex [Gordonia sp. KTR9]
gi|403646436|gb|AFR49676.1| Nuclease subunit of the excinuclease complex [Gordonia sp. KTR9]
Length = 600
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 82/197 (41%), Gaps = 29/197 (14%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+V DLETT A R + E GA+ + +++ F+TL+ P + + G
Sbjct: 44 LVVVDLETTGSDPARDR--ITEIGAVKIRGGEIIG--EFATLVDPG--RPIPPQIVTLTG 97
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
IT + AP E V F G + HN RFD +++ + P
Sbjct: 98 ITTAMLTDAPRIESVLPSFFEFARGSILVAHNA-RFDMGFLRQNAIRLQLP------WTF 150
Query: 135 SLGVLTEKFGRR------AGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL-------- 179
SL + T RR A +K++ LA F + + HR+LDD R +EV
Sbjct: 151 SLSLCTVTMARRILTRDEAPTVKLSALADLFDVSVRPTHRALDDARATVEVFHRLLERVG 210
Query: 180 -KHCATVLFLESSLPNT 195
+ ATV L S LP T
Sbjct: 211 NQGIATVGDLTSYLPRT 227
>gi|378715765|ref|YP_005280654.1| putative exonuclease RNase T/DNA polymerase III [Gordonia
polyisoprenivorans VH2]
gi|375750468|gb|AFA71288.1| putative exonuclease RNase T/DNA polymerase III [Gordonia
polyisoprenivorans VH2]
Length = 585
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 78/176 (44%), Gaps = 21/176 (11%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK-DLSAVALKSSR 71
E V D+ET+ + +R VL A+ + V+ E ++TL+ D V +
Sbjct: 2 GEWVLVDVETS--GTSARRDRVLSLAAMTLDSSGRVQ-EEYATLLDADCDPGPVHIHH-- 56
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
+TR+ + AP F+ + +L GR HN FD + E G P+
Sbjct: 57 ---LTRKRLRGAPTFDATLPHLDRMLAGRTLVAHNA-SFDHGFLVEEARRFGTTLPI--- 109
Query: 132 MIDSLGVLTEKFGRR----AGNMKMATLASYFGLGQ-QKHRSLDDVRMNLEVLKHC 182
S + T RR N+K+ TLA+Y+G+ Q H + DDV+ EV +HC
Sbjct: 110 ---SHRLCTVTLARRLQLNVPNVKLGTLAAYWGIPQASAHDARDDVKTLAEVFRHC 162
>gi|118443832|ref|YP_878213.1| DNA polymerase III PolC [Clostridium novyi NT]
gi|118134288|gb|ABK61332.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
novyi NT]
Length = 1444
Score = 51.2 bits (121), Expect = 5e-04, Method: Composition-based stats.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 11/172 (6%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V FDLETT + Q ++EFGA+ + +++ SFS + P+ + K + I
Sbjct: 432 VVFDLETT--GFSSQYDKIIEFGAVKIKNGNIID--SFSAFVNPE--IKIPYKITELTSI 485
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
T + V+ A ++V K G V HN FD + I++ ++ V +D+
Sbjct: 486 TNDDVKDAETIDKVLPKFIKFAEGTVLVAHN-SNFDMSFIRKNCKDLNIECNYTV--MDT 542
Query: 136 LGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHCATVL 186
+ + F K+ T+A + G+ + HR++DD + ++L HC +L
Sbjct: 543 IPLAKFLFPELK-RYKLNTIAKHLGVSLENHHRAVDDAKATGDILVHCFKLL 593
>gi|302869008|ref|YP_003837645.1| DNA polymerase III subunit epsilon [Micromonospora aurantiaca ATCC
27029]
gi|302571867|gb|ADL48069.1| DNA polymerase III, epsilon subunit [Micromonospora aurantiaca ATCC
27029]
Length = 584
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 14/168 (8%)
Query: 16 VFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
V DLETT P G + E GA+ V R EL +TL+ P + +
Sbjct: 33 VVVDLETTGGAPDGGG----ITEIGAVKV--RGGEELGVLATLVNPG--VPIPPFITVLT 84
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT+ + AP E+V ++ V HN +D +K A A+ G P P ++
Sbjct: 85 GITQAMLLPAPPIEQVLPSFLEFVSDAVLVAHNA-PYDVGFLKAACAKHGYRWPNPR-VL 142
Query: 134 DSLGVLTEKFGR-RAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVL 179
D+ + R N K+ TLA+YF Q HR+LDD + ++VL
Sbjct: 143 DTAALARRVLTRDEVPNRKLGTLAAYFRTATQPTHRALDDAKATVDVL 190
>gi|297544667|ref|YP_003676969.1| DNA polymerase III subunit alpha [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296842442|gb|ADH60958.1| DNA polymerase III, alpha subunit [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 1406
Score = 51.2 bits (121), Expect = 5e-04, Method: Composition-based stats.
Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 15/169 (8%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKS--SR 71
E FD+ETT ++E GA+ + K+++ +F T + PK + + S ++
Sbjct: 392 EFTVFDIETTGLSNINDE--IIEIGAVKIKEGKIID--TFETFVNPK----IPISSFITK 443
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GI V+ AP EE+ K + V HN FD + IK + V
Sbjct: 444 LTGIDESMVKDAPSIEEILPKFLEFSSNSVLVAHNA-NFDVSFIKSKAKKFN--LNVNNT 500
Query: 132 MIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
++D+L L+ + N K+ TLA + + + HR++DD R E+
Sbjct: 501 VLDTLE-LSRHLYKDLKNYKLDTLAEHLQVKLEHHHRAVDDARATAEIF 548
>gi|350569712|ref|ZP_08938108.1| hypothetical protein HMPREF9153_2193 [Propionibacterium avidum ATCC
25577]
gi|348660530|gb|EGY77240.1| hypothetical protein HMPREF9153_2193 [Propionibacterium avidum ATCC
25577]
Length = 641
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 72/164 (43%), Gaps = 11/164 (6%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT G + E GA+ VC VE E F TL++P + +++ GIT
Sbjct: 80 DLETT---GTGDNAQITEIGAVKVCGGH-VEGE-FQTLVRPSEPIPASVQV--LTGITDT 132
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V AP + V G V HN RFD +K A+AE P ++D+L +
Sbjct: 133 MVRPAPPLDAVLPSWSEFSRGTVLVAHNA-RFDVGFLKRAYAEHDYSWENP-AVVDTLAL 190
Query: 139 LTEKFGR-RAGNMKMATLASYF-GLGQQKHRSLDDVRMNLEVLK 180
R N ++ TL+ F HR+L D R ++VL
Sbjct: 191 ARSVLPRDEVRNYRLGTLSQLFRTTTTPSHRALADARATVDVLH 234
>gi|410641539|ref|ZP_11352059.1| DNA polymerase III subunit epsilon [Glaciecola chathamensis S18K6]
gi|410139072|dbj|GAC10246.1| DNA polymerase III subunit epsilon [Glaciecola chathamensis S18K6]
Length = 788
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V D+ETT + G R + E GA+ V ++V+ S+S+LI P+ V +R GI
Sbjct: 624 VVVDVETTGGCKPGHR--ITEIGAVKVINGRVVD--SWSSLINPE--RRVPHFITRLTGI 677
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
+ + VE AP F EV D + + ++ HN+ FD K +A + + +P
Sbjct: 678 SNDMVEDAPLFCEVIDDLECFMQDCIFVAHNV-NFDYGFFKLEYARLERSFSMP-----K 731
Query: 136 LGVLTE--KFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
L + E K+ + + + L +GL HR+L D + E+L
Sbjct: 732 LCTVREMRKYYPGSKSYSLGNLTKEYGLSLDNHHRALCDAQAAAELL 778
>gi|300856800|ref|YP_003781784.1| DNA polymerase III [Clostridium ljungdahlii DSM 13528]
gi|300436915|gb|ADK16682.1| predicted DNA polymerase III [Clostridium ljungdahlii DSM 13528]
Length = 362
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 102/262 (38%), Gaps = 28/262 (10%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
E V D ETT + ++E GA+ K E + F LI P + K ++ +
Sbjct: 60 EFVALDFETTGLDYRNDK--IVEIGAVKYKDEK--ETDKFHFLINPH--IHIPEKITKIN 113
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GI V+ +P EV K+ + HN R FD + E ++ +I
Sbjct: 114 GIEDSMVKDSPSINEVIPKLIDFMGNLPIVVHNAR-FDIDFLDENMSDNKYRGN---SVI 169
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEV-LKHCATVLFLESSL 192
D+L + + K N ++ T+ Y + HR++DD ++ E+ LK+C ++
Sbjct: 170 DTLSI-SRKMFENIDNHRLQTIKDYLKIDLNSHRAIDDAKVAAEIYLKYCREGYPIKKDY 228
Query: 193 PNTFNS----NLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQRSAVPYTRTSLGKM 248
NL++S P E+ + LGY+R T K+
Sbjct: 229 DKLRKQKNKINLETSFKYD---------PIDEDIYKCFIAYKLGYERRDG--TLKQFHKI 277
Query: 249 TESVKNLLCKSQGSQPLNTLLK 270
+ + +CK G + T K
Sbjct: 278 EDKISE-ICKEHGGRYFKTAAK 298
>gi|154174963|ref|YP_001408508.1| DNA polymerase III subunit epsilon [Campylobacter curvus 525.92]
gi|112803051|gb|EAU00395.1| nickel transport permease component NikD [Campylobacter curvus
525.92]
Length = 273
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 18/176 (10%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
E D+ET+ +GQ ++E GA+ + + VE+ F + + D V ++
Sbjct: 75 EFCIVDIETSGGITSGQ---IIEIGALKI--KNGVEIGRFESFV---DAPFVPENITQLT 126
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GI++ + AP + V ++ L V+ HN+ FD I ++ + IG +GM+
Sbjct: 127 GISQSDLTGAPSLKSVLERFKIFLGTSVFVAHNVN-FDYGFISQSLSNIG------LGML 179
Query: 134 DSLGVLTEKFGRR---AGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVL 186
+ + T RR + + +L G+ HR+L+D E+LK C + L
Sbjct: 180 LNRKLCTIDLSRRTIASQKYGLGSLKELLGINNTHHRALNDAIAATEILKICISRL 235
>gi|334134195|ref|ZP_08507707.1| DNA polymerase III, alpha subunit, Gram-positive type
[Paenibacillus sp. HGF7]
gi|333608277|gb|EGL19579.1| DNA polymerase III, alpha subunit, Gram-positive type
[Paenibacillus sp. HGF7]
Length = 1109
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 10/170 (5%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
A V FD+ETT + ++E + V K E++ +ST I+P + + +
Sbjct: 93 ATYVVFDIETTGLSVLNNK--IIEIAGVKVQEGK--EIDRYSTFIQPHE--KIPYHIQQL 146
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
IT E V+ APE + K + V HN RFD I+ +G P + +
Sbjct: 147 TNITDEMVKDAPELADELPKFIDFIGDSVLVAHN-ARFDIGFIQANLKRLGHPQ-MTNAV 204
Query: 133 IDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKH 181
+D+L + F N ++ TL+ F + + HR++DD VL+H
Sbjct: 205 LDTLEMARLLFPSMK-NHRLNTLSDKFKVSLENHHRAIDDTIALGHVLQH 253
>gi|307246199|ref|ZP_07528280.1| hypothetical protein appser1_14030 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307255179|ref|ZP_07536997.1| hypothetical protein appser9_14150 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307259617|ref|ZP_07541341.1| hypothetical protein appser11_14150 [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306852808|gb|EFM85032.1| hypothetical protein appser1_14030 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306862052|gb|EFM94028.1| hypothetical protein appser9_14150 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306866262|gb|EFM98126.1| hypothetical protein appser11_14150 [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
Length = 257
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 75/172 (43%), Gaps = 17/172 (9%)
Query: 16 VFFDLETTV-----PRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
V D ETT P + G ++E GA+ V R+L +F IKP V ++
Sbjct: 10 VVLDTETTGMSFSGPPQIGHN--IIEIGAVEVINRRLTG-RTFHVYIKPP--REVEEEAI 64
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
+ GIT E ++ P F EVAD+ + G HN FD A + + F+ + P P
Sbjct: 65 KVHGITNEFLQDKPVFAEVADEFIEFIKGAELIIHN-APFDVAFMDQEFSYLENPPPKTA 123
Query: 131 GM---IDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
M DSL V + + + N+ L G+ K R L ++ E+L
Sbjct: 124 EMCSVTDSLAVARKMYPGKRNNLD--ALCDRLGIDNSK-RVLHGALLDAEIL 172
>gi|303250637|ref|ZP_07336834.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|302650625|gb|EFL80784.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 257
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 75/172 (43%), Gaps = 17/172 (9%)
Query: 16 VFFDLETTV-----PRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
V D ETT P + G ++E GA+ V R+L +F IKP V ++
Sbjct: 10 VVLDTETTGMSFSGPPQIGHN--IIEIGAVEVINRRLTG-RTFHVYIKPP--REVEEEAI 64
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
+ GIT E ++ P F EVAD+ + G HN FD A + + F+ + P P
Sbjct: 65 KVHGITNEFLQDKPVFAEVADEFIEFIKGAELIIHN-APFDVAFMDQEFSYLENPPPKTA 123
Query: 131 GM---IDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
M DSL V + + + N+ L G+ K R L ++ E+L
Sbjct: 124 EMCSVTDSLAVARKMYPGKRNNLD--ALCDRLGIDNSK-RVLHGALLDAEIL 172
>gi|358447693|ref|ZP_09158209.1| DNA polymerase III subunit epsilon [Marinobacter manganoxydans
MnI7-9]
gi|357228046|gb|EHJ06495.1| DNA polymerase III subunit epsilon [Marinobacter manganoxydans
MnI7-9]
Length = 486
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 76/183 (41%), Gaps = 33/183 (18%)
Query: 12 TAEIVFFDLETTVPRRA-------GQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSA 64
+A F D+ETT A G RFW G ++ + TL+ P+ +
Sbjct: 10 SATFAFLDIETTGGNSARDRITEIGIRFW--RAGEVV---------GEWQTLLNPE--TR 56
Query: 65 VALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGK 124
++ GI+ E V AP F +VAD++ L +V+ HN RFD IK F + +
Sbjct: 57 ISPFIENFTGISNEMVADAPLFADVADELEEQLKDKVFVAHNA-RFDYGFIKSEFRRLER 115
Query: 125 PAPVPVGMIDSLGVLTEKFGRRAG----NMKMATLASYFGLGQ-QKHRSLDDVRMNLEVL 179
V + T K RR M L + GL Q Q+HR++ DV L
Sbjct: 116 LFSAKV-------LCTAKLSRRLYPEFRRHNMDALIARHGLAQVQRHRAMGDVSAMLSFF 168
Query: 180 KHC 182
+H
Sbjct: 169 EHA 171
>gi|383828415|ref|ZP_09983504.1| exonuclease, DNA polymerase III, epsilon subunit family
[Saccharomonospora xinjiangensis XJ-54]
gi|383461068|gb|EID53158.1| exonuclease, DNA polymerase III, epsilon subunit family
[Saccharomonospora xinjiangensis XJ-54]
Length = 569
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 73/173 (42%), Gaps = 22/173 (12%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V DLETT G + E GA+ V R L F+TLI P +++ + GI
Sbjct: 18 VVVDLETTGGAPDGGN--ITEIGAVKV--RGGRVLGEFATLINPG--TSIPPQIVALTGI 71
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
T V AP EEV +G V HN FD + +K A G P P +
Sbjct: 72 TTAMVHHAPRIEEVLPSFLEFADGAVLVAHNA-GFDTSFLKAACGRHGYAWPNPTVLC-- 128
Query: 136 LGVLTEKFGRRA--------GNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVL 179
T K RR + +++ LA+ FG HR+LDD R ++VL
Sbjct: 129 ----TLKLARRVLRREHTPRRSHRLSALAALFGSATTPNHRALDDARACVDVL 177
>gi|227813558|ref|YP_002813567.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. CDC
684]
gi|227004983|gb|ACP14726.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. CDC 684]
Length = 315
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + PK + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPK--RPIPDRIMSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA++
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASI 171
>gi|57237506|ref|YP_178520.1| DNA polymerase III subunit epsilon [Campylobacter jejuni RM1221]
gi|57166310|gb|AAW35089.1| exonuclease, DNA polymerase III, epsilon subunit family
[Campylobacter jejuni RM1221]
Length = 233
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+E+T G+ +LE GA+ + K E+ F + +K K++ + GIT E
Sbjct: 53 DIESTGGVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPE---NITELTGITYE 104
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
VE+AP +V L ++ HN+ RFD + I +A E G G++ + +
Sbjct: 105 MVENAPSLTKVLSDFRLFLKDSIFVAHNV-RFDYSFISKALNECG------FGILLNRRI 157
Query: 139 LTEKFGR---RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
T +F + + K+ L + G+ HR+LDD E+ K+C
Sbjct: 158 CTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEIFKYC 204
>gi|407691663|ref|YP_006816452.1| DNA polymerase III subunit epsilon [Actinobacillus suis H91-0380]
gi|407387720|gb|AFU18213.1| DNA polymerase III subunit epsilon [Actinobacillus suis H91-0380]
Length = 257
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 75/172 (43%), Gaps = 17/172 (9%)
Query: 16 VFFDLETTV-----PRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
V D ETT P + G ++E GA+ V R+L +F IKP V ++
Sbjct: 10 VVLDTETTGMSFSGPPQIGHN--IIEIGAVEVINRRLTG-RTFHVYIKPP--REVEEEAI 64
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
+ GIT E ++ P F EVAD+ + G HN FD A + + F+ + P P
Sbjct: 65 KVHGITNEFLQDKPVFAEVADEFIEFIKGAELIIHN-APFDVAFMDQEFSYLENPPPKTA 123
Query: 131 GM---IDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
M DSL V + + + N+ L G+ K R L ++ E+L
Sbjct: 124 EMCSVTDSLAVARKMYPGKRNNLD--ALCDRLGIDNSK-RVLHGALLDAEIL 172
>gi|399525361|ref|ZP_10765805.1| exonuclease [Atopobium sp. ICM58]
gi|398373254|gb|EJN51214.1| exonuclease [Atopobium sp. ICM58]
Length = 531
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 77/171 (45%), Gaps = 16/171 (9%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V DLETT G + E GA+ V ++ + FS+L +P + S GI
Sbjct: 11 VVVDLETT---GLGAGAEITEIGAVSVRDGRITD--EFSSLARPSRPIPPFITS--LTGI 63
Query: 76 TREAVESAPEFEEVADKI--FSILNGR---VWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
T V A V D+ +S L+G V HN FD ++ A G+P P P
Sbjct: 64 TPAMVADADPIASVLDRFMEWSGLDGESAPVLVAHNAS-FDVGFLRRAARASGRPWPKP- 121
Query: 131 GMIDSLGVLTEKFGRR-AGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVL 179
+ D+L + R N K+AT+ASYFG +HR+L D R EVL
Sbjct: 122 RVADTLALARLALPRPLVRNHKLATIASYFGTATTPEHRALGDARATAEVL 172
>gi|387815555|ref|YP_005431045.1| DNA polymerase III subunit epsilon [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381340575|emb|CCG96622.1| putative DNA polymerase III, epsilon subunit [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 509
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 87/193 (45%), Gaps = 22/193 (11%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
F D+ETT QR + E G I R + + TL+ P+ + ++ R G
Sbjct: 35 FAFVDIETTGGN--AQRDRITEIG--IRFWRNGAVVGEWQTLLNPE--ARISGFIERLTG 88
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
I+ V SAP FE VAD++ L+G ++ HN RFD IK F +G+ +
Sbjct: 89 ISNAMVASAPRFETVADELERHLDGCIFVAHNA-RFDYGFIKSEFRRLGR-------LFS 140
Query: 135 SLGVLTEKFGR----RAGNMKMATLASYFGL-GQQKHRSLDDVRMNLEVLKHCATVL-FL 188
+ + T + R A M L + GL ++HR++ DV L +H T+L
Sbjct: 141 ARVLCTVRLSRALYPEAERHNMDALIARHGLPAVERHRAMGDVTAMLAFFEH--TLLEHG 198
Query: 189 ESSLPNTFNSNLQ 201
E ++ T N LQ
Sbjct: 199 EDTVGATINRLLQ 211
>gi|332306380|ref|YP_004434231.1| DNA polymerase III subunit epsilon [Glaciecola sp. 4H-3-7+YE-5]
gi|332173709|gb|AEE22963.1| DNA polymerase III, epsilon subunit [Glaciecola sp. 4H-3-7+YE-5]
Length = 788
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V D+ETT + G R + E GA+ V ++V+ S+S+LI P+ V +R GI
Sbjct: 624 VVVDVETTGGCKPGHR--ITEIGAVKVINGRVVD--SWSSLINPE--RRVPHFITRLTGI 677
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
+ + VE AP F EV D + + ++ HN+ FD K +A + + +P
Sbjct: 678 SNDMVEEAPLFCEVIDDLECFMQDCIFVAHNV-NFDYGFFKLEYARLERSFSMP-----K 731
Query: 136 LGVLTE--KFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
L + E K+ + + + L +GL HR+L D + E+L
Sbjct: 732 LCTVREMRKYYPGSKSYSLGNLTKEYGLSLDNHHRALCDAQAAAELL 778
>gi|336179029|ref|YP_004584404.1| DNA polymerase III subunit epsilon [Frankia symbiont of Datisca
glomerata]
gi|334860009|gb|AEH10483.1| DNA polymerase III, epsilon subunit [Frankia symbiont of Datisca
glomerata]
Length = 629
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 72/167 (43%), Gaps = 10/167 (5%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
V DLETT R A + E GA+ + R L +TL++P + + S G
Sbjct: 93 FVVVDLETTGSRAADSE--ITEIGAVKI--RGGEVLAELATLVRPD--APIPPFISVLTG 146
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
IT V +AP + +G V HN FD ++EA G P P +D
Sbjct: 147 ITDAMVATAPRIDAALPTFLEFAHGSVLVAHNA-PFDLGFLREACVRCGHPVPD-WEHLD 204
Query: 135 SLGVLTEKFGR-RAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVL 179
+L + + GR + K+A+LA F HR+L D R + VL
Sbjct: 205 TLRIARQVLGRDETPDHKLASLARLFPADAGPCHRALADARATVAVL 251
>gi|402548230|ref|ZP_10845094.1| exonuclease [Campylobacter sp. FOBRC14]
gi|401015717|gb|EJP74495.1| exonuclease [Campylobacter sp. FOBRC14]
Length = 273
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 18/176 (10%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
E D+ET+ +GQ ++E GA+ + + VE+ F + + D V ++
Sbjct: 75 EFCIVDIETSGGITSGQ---IIEIGALKI--KNGVEIGRFESFV---DAPFVPENITQLT 126
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GI++ + AP + V ++ L V+ HN+ FD I ++ + IG +GM+
Sbjct: 127 GISQSDLTGAPSLKSVLERFKIFLGTSVFVAHNVN-FDYGFISQSLSSIG------LGML 179
Query: 134 DSLGVLTEKFGRR---AGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVL 186
+ + T RR + + +L G+ HR+L+D E+LK C + L
Sbjct: 180 LNRKLCTIDLSRRTIASQKYGLGSLKELLGINNTHHRALNDAIAATEILKICISRL 235
>gi|312869960|ref|ZP_07730099.1| putative ATP-dependent DNA helicase DinG [Lactobacillus oris
PB013-T2-3]
gi|311094545|gb|EFQ52850.1| putative ATP-dependent DNA helicase DinG [Lactobacillus oris
PB013-T2-3]
Length = 949
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 9/119 (7%)
Query: 19 DLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITR 77
DLETT G R +++ G ++V +++ F T + P++ + + GI
Sbjct: 23 DLETTGTSVNHGDR--IIQIGCVLVQDGQVIN--HFETKVNPRE--KIPRAVVQLTGIQD 76
Query: 78 EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSL 136
V AP FE+VA I+S+L G + HN+ FD + G P P+P+ ID++
Sbjct: 77 RDVRKAPLFEDVAGTIYSLLTGTTFVAHNV-NFDFPFLNAELERAGYP-PLPIKAIDTV 133
>gi|158316676|ref|YP_001509184.1| DNA polymerase III subunit epsilon [Frankia sp. EAN1pec]
gi|158112081|gb|ABW14278.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EAN1pec]
Length = 389
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 11/140 (7%)
Query: 34 VLEFGAIIVCPRKLVELESFSTLIKPK-DLSAVALKSSRCDGITREAVESAPEFEEVADK 92
VL ++ VE +STL+ P D V + G+TR+ + +P F VAD+
Sbjct: 94 VLSVAVVLTAADGTVE-HRWSTLLDPGCDPGPVHIH-----GLTRQRLAGSPTFAAVADE 147
Query: 93 IFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKM 152
+ +L GRV HN FD + IG PV + L + G ++++
Sbjct: 148 VAGLLAGRVLVAHNA-AFDWRMLAGEAMRIGTTIPVEWRLCTL--TLASRLGLELPSLRL 204
Query: 153 ATLASYFGLGQQK-HRSLDD 171
A+LA+Y+G+ Q++ H + DD
Sbjct: 205 ASLAAYWGVVQRRAHDAQDD 224
>gi|423469803|ref|ZP_17446547.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG6O-2]
gi|402437882|gb|EJV69903.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG6O-2]
Length = 315
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPSRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNNVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA +
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAI 171
>gi|421876389|ref|ZP_16307947.1| ATP-dependent helicase DinG [Leuconostoc citreum LBAE C10]
gi|372557910|emb|CCF24067.1| ATP-dependent helicase DinG [Leuconostoc citreum LBAE C10]
Length = 801
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 21/176 (11%)
Query: 16 VFFDLETTVPRRA-GQRFWVLEFGAIIVCPRKLVE-LESFSTLIKPKDLSAVALKSSRCD 73
V DLETT A G R +++ G + R++++ ESF +P D + +
Sbjct: 8 VVVDLETTGQSVAKGGR--IIQIGMTFIKNRRIIDHFESFVNPAQPIDRNI-----QQLT 60
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
I+++ V++AP FEE+A I ++L G V HN+ FD + + FA G P + I
Sbjct: 61 HISQKEVKNAPYFEEIAPVIQNLLTGTVIIAHNV-NFDYPYLNDEFARTGFPE-LTNAAI 118
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHCATVLFL 188
D++ L + A ++ L +Y + HR+ D H +LFL
Sbjct: 119 DTVQ-LAQVLLPTAPGYRLLDLTTYLNITLNNAHRANADA--------HATALLFL 165
>gi|407985473|ref|ZP_11166069.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Mycobacterium hassiacum DSM 44199]
gi|407372970|gb|EKF21990.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Mycobacterium hassiacum DSM 44199]
Length = 338
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 20/180 (11%)
Query: 6 PSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAV 65
P+ AGT V D+ET+ R V+ A+ + VE ++ +L+ P V
Sbjct: 18 PAHEAGTGWAVV-DVETSGFHPGHAR--VVSIAALALSDDGNVE-QTLYSLLDP----GV 69
Query: 66 ALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKP 125
+ G+T E + P F ++ + +L GR HN+ FD + + IG
Sbjct: 70 DPGPTHVHGLTAEMLAGQPRFADIVAPLIELLRGRTLVAHNV-AFDYSFLVAEAEMIGAE 128
Query: 126 APVPVGMIDSLGVLTEKFGRRAG----NMKMATLASYFGLGQQK-HRSLDDVRMNLEVLK 180
P IDS + T + RR N+++ TLA+++G+ Q K H +LDD + ++LK
Sbjct: 129 LP-----IDS-AMCTVELARRLALGTENLRLETLAAHWGITQLKPHDALDDALVLAQILK 182
>gi|423635620|ref|ZP_17611273.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD156]
gi|401276810|gb|EJR82755.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD156]
Length = 315
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ +V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTKVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA +
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAI 171
>gi|417884939|ref|ZP_12529100.1| exonuclease DnaQ family/helicase DinG family [Lactobacillus oris
F0423]
gi|341596895|gb|EGS39481.1| exonuclease DnaQ family/helicase DinG family [Lactobacillus oris
F0423]
Length = 949
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 9/119 (7%)
Query: 19 DLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITR 77
DLETT G R +++ G ++V +++ F T + P++ + + GI
Sbjct: 23 DLETTGTSVNHGDR--IIQIGCVLVQDGQVIN--HFETKVNPRE--KIPRAVVQLTGIQD 76
Query: 78 EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSL 136
V AP FE+VA I+S+L G + HN+ FD + G P P+P+ ID++
Sbjct: 77 RDVRKAPLFEDVAGTIYSLLTGTTFVAHNV-NFDFPFLNAELERAGYP-PLPIKAIDTV 133
>gi|304403858|ref|ZP_07385520.1| DNA polymerase III, epsilon subunit [Paenibacillus curdlanolyticus
YK9]
gi|304346836|gb|EFM12668.1| DNA polymerase III, epsilon subunit [Paenibacillus curdlanolyticus
YK9]
Length = 244
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 14 EIVFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
EI+ FDLETT P + ++ FGA++V ++ E SF +L+ PK + + ++
Sbjct: 59 EIIVFDLETTGFYPYNGDE---IISFGAVLVKGDEIFEDVSFYSLVNPK--RRIPMHITQ 113
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGH 105
GIT E VE AP+ +V + R+ H
Sbjct: 114 LTGITNEMVEGAPDLMQVLHDFMEFVGRRILLAH 147
>gi|152995731|ref|YP_001340566.1| DNA polymerase III subunit epsilon [Marinomonas sp. MWYL1]
gi|150836655|gb|ABR70631.1| DNA polymerase III, epsilon subunit [Marinomonas sp. MWYL1]
Length = 237
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 74/168 (44%), Gaps = 14/168 (8%)
Query: 16 VFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
V D ETT + + G R ++E G + + RKL F I P V ++ R G
Sbjct: 4 VVLDTETTGIDPKQGHR--IIEIGCVEMIGRKLTN-RHFHVYINPD--REVEEEAFRVHG 58
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG---KPAPVPVG 131
I+ E + P F E+A + F + G HN FD + FA IG K A V G
Sbjct: 59 ISNEFLADKPRFHEIAQEFFDFIKGAELIIHNA-PFDIGFMDHEFARIGGYPKTAEV-CG 116
Query: 132 MIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
+ DSL +K + N+ + L +G+ HR L ++ E+L
Sbjct: 117 VFDSLVYARKKHPGQKNNLDI--LCRRYGI-DNSHRELHGALLDSEIL 161
>gi|229151805|ref|ZP_04280004.1| DNA polymerase III alpha subunit [Bacillus cereus m1550]
gi|228631618|gb|EEK88248.1| DNA polymerase III alpha subunit [Bacillus cereus m1550]
Length = 318
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 12 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPDRITSLT 65
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 66 GITNYRVSDAPTIEEVLPLFLAFLHANVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 123
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ ++A N K+ TL G+ H + DD V + CA +
Sbjct: 124 DTV-FLAKKYMKQAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAI 174
>gi|190150601|ref|YP_001969126.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|303252089|ref|ZP_07338258.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|189915732|gb|ACE61984.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|302649071|gb|EFL79258.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
Length = 257
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 77/173 (44%), Gaps = 19/173 (10%)
Query: 16 VFFDLETTV-----PRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKP-KDLSAVALKS 69
V D ETT P + G ++E GA+ V R+L +F IKP +++ A+K
Sbjct: 10 VVLDTETTGMSFSGPPQIGHN--IIEIGAVEVINRRLTG-RTFHVYIKPPREVDEEAIK- 65
Query: 70 SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVP 129
GIT E ++ P F EVAD+ + G HN FD A + + F+ + P P
Sbjct: 66 --VHGITNEFLQDKPVFAEVADEFIEFIKGAELIIHN-APFDVAFMDQEFSYLENPPPKT 122
Query: 130 VGM---IDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
M DSL V + + + N+ L G+ K R L ++ E+L
Sbjct: 123 AEMCSVTDSLAVARKMYPGKRNNLD--ALCDRLGIDNSK-RVLHGALLDAEIL 172
>gi|410645279|ref|ZP_11355746.1| DNA polymerase III subunit epsilon [Glaciecola agarilytica NO2]
gi|410135209|dbj|GAC04145.1| DNA polymerase III subunit epsilon [Glaciecola agarilytica NO2]
Length = 778
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V D+ETT + G R + E GA+ V ++V+ S+S+LI P+ V +R GI
Sbjct: 614 VVVDVETTGGCKPGHR--ITEIGAVKVINGRVVD--SWSSLINPE--RRVPHFITRLTGI 667
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
+ + VE AP F EV D + + ++ HN+ FD K +A + + +P
Sbjct: 668 SNDMVEDAPLFCEVIDDLERFMQDCIFVAHNV-NFDYGFFKLEYARLERSFSMP-----K 721
Query: 136 LGVLTE--KFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
L + E K+ + + + L +GL HR+L D + E+L
Sbjct: 722 LCTVREMRKYYPGSKSYSLGNLTKEYGLSLDNHHRALCDAQAAAELL 768
>gi|392417017|ref|YP_006453622.1| exonuclease, DNA polymerase III, epsilon subunit family
[Mycobacterium chubuense NBB4]
gi|390616793|gb|AFM17943.1| exonuclease, DNA polymerase III, epsilon subunit family
[Mycobacterium chubuense NBB4]
Length = 623
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 74/173 (42%), Gaps = 19/173 (10%)
Query: 15 IVFFDLETTVPRRAGQRF-WVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
V DLETT R G++ + E GA+ V R L F+TL+ P ++ +
Sbjct: 22 FVVVDLETTGGRPTGEKHDAITEIGAVKV--RGGEVLGEFATLVDPG--RSIPPQIVALT 77
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP E V +G V HN FD ++ A P P P +
Sbjct: 78 GITSAMVYDAPRIEAVLPAFLEFSHGAVLVAHNA-GFDIGFLRAAAERNHVPWPKPPVLC 136
Query: 134 DSLGVLTEKFGRR------AGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVL 179
T + RR A +++++ LA FG HR+LDD R ++VL
Sbjct: 137 ------TVRLARRVLTRDEAPSVRLSALAQLFGASTTPTHRALDDARATVDVL 183
>gi|289426266|ref|ZP_06428012.1| GIY-YIG catalytic domain protein [Propionibacterium acnes SK187]
gi|289153431|gb|EFD02146.1| GIY-YIG catalytic domain protein [Propionibacterium acnes SK187]
Length = 584
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 73/172 (42%), Gaps = 13/172 (7%)
Query: 13 AEIVF--FDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
+E+ F DLETT Q + E GA+ VC + VE E F TL+ P +
Sbjct: 15 SEVTFCVVDLETTGTSEGSQ---ITEIGAVKVCGGR-VEGE-FQTLVCPT--GPIPASVQ 67
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
GIT V SAP + HN RFD ++ A+A+ P P
Sbjct: 68 VLTGITHAMVRSAPSLSAILPSWLEFSRSTALVAHNA-RFDIGFLQRAYAQHDYPWGDP- 125
Query: 131 GMIDSLGVLTEKFGR-RAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLK 180
++D+L + R N K++TL+ F HR+L D R ++VL
Sbjct: 126 AVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTPSHRALADARATVDVLH 177
>gi|387790880|ref|YP_006255945.1| DNA polymerase III subunit epsilon family exonuclease [Solitalea
canadensis DSM 3403]
gi|379653713|gb|AFD06769.1| exonuclease, DNA polymerase III, epsilon subunit family [Solitalea
canadensis DSM 3403]
Length = 460
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+ETT + + E I +++++ S+ TLI P S++ + GI+ E
Sbjct: 12 DIETT--GGYASNYGITEVAIFIHNGKEVID--SYETLINPG--SSIPIHIQSLTGISNE 65
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVP 129
V++AP F EVA+ I+ +L+ +V+ HN+ FD + + G P
Sbjct: 66 MVKNAPSFSEVAENIYQLLHDKVFVAHNV-NFDYSFLTHQLTTCGYQLQAP 115
>gi|311742833|ref|ZP_07716641.1| DNA polymerase III epsilon subunit [Aeromicrobium marinum DSM
15272]
gi|311313513|gb|EFQ83422.1| DNA polymerase III epsilon subunit [Aeromicrobium marinum DSM
15272]
Length = 569
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 72/166 (43%), Gaps = 11/166 (6%)
Query: 19 DLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGIT 76
DLETT P++ + + E GA++V R L F TL+ P + ++ + GIT
Sbjct: 36 DLETTGGSPQKGSR---ITEIGAVLV--RGGEVLGEFQTLVNPDE--SIPAFITVLTGIT 88
Query: 77 REAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSL 136
+ V AP E G V HN FD ++ A AE+ P P + +L
Sbjct: 89 DQMVVQAPRIAEALPSFLEFARGSVLVAHNA-PFDTGFLRHAAAELQIPWPRFEVLDTAL 147
Query: 137 GVLTEKFGRRAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLKH 181
N K+ TLA++ G HR+L D R ++VL H
Sbjct: 148 LARRVLLAGEVRNCKLGTLAAHVGATTTPNHRALSDARATVDVLHH 193
>gi|423574790|ref|ZP_17550909.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
MSX-D12]
gi|423604758|ref|ZP_17580651.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD102]
gi|401211060|gb|EJR17809.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
MSX-D12]
gi|401243906|gb|EJR50270.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD102]
Length = 315
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA++
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASI 171
>gi|423453105|ref|ZP_17429958.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG5X1-1]
gi|401138785|gb|EJQ46350.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG5X1-1]
Length = 315
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPSRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDIRFLKSNVNMLGLPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA++
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASI 171
>gi|333908476|ref|YP_004482062.1| DNA polymerase III subunit epsilon [Marinomonas posidonica
IVIA-Po-181]
gi|333478482|gb|AEF55143.1| DNA polymerase III, epsilon subunit [Marinomonas posidonica
IVIA-Po-181]
Length = 238
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 13/168 (7%)
Query: 16 VFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
V D ETT + R G + ++E G + + RKL + F I P + ++ R G
Sbjct: 4 VILDTETTGIDPRQGHK--IIEIGCVEMVGRKLTK-NHFHVYINPD--REIEEEAFRVHG 58
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV---G 131
I+ E + P F +VA + F + G HN FD I FA +G P G
Sbjct: 59 ISNEFLNDKPRFHQVAQEFFEFIKGAELIIHNA-PFDIGFIDHEFALLGAGYPKVADVCG 117
Query: 132 MIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
+ DSL +K + N+ L +G+ HR L ++ E+L
Sbjct: 118 VFDSLVYARKKHPGQKNNLD--ALCKRYGI-DNSHRDLHGALLDSEIL 162
>gi|289571955|ref|ZP_06452182.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
T17]
gi|289545709|gb|EFD49357.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
T17]
Length = 284
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 16/129 (12%)
Query: 51 ESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRF 110
+S +L+ PK V + G+T ++ P+F ++A ++ +L GR HN+ F
Sbjct: 49 QSVVSLLNPK----VDPGPTHVHGLTAAMLDDQPQFADIAGEVVDVLRGRTLVAHNV-AF 103
Query: 111 DCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRR----AGNMKMATLASYFGLGQQK- 165
D A + PV M T + RR N+++ TLA+++G+ QQ+
Sbjct: 104 DYAFLAAEAEIAEAELPVDFVMC------TVELARRLQLGVDNLRLETLAAHWGVPQQRP 157
Query: 166 HRSLDDVRM 174
H + DD R+
Sbjct: 158 HDAFDDARV 166
>gi|209519136|ref|ZP_03267941.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
gi|209500436|gb|EEA00487.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
Length = 382
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 8/123 (6%)
Query: 1 MDGFIPSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK 60
M + + A A IVF DLETT + R + E G + V P + +S+LI P+
Sbjct: 1 MSELLSPELALDAPIVFVDLETTGGSTSEHR--ITEVGVVEVGPTGVTR---WSSLIDPQ 55
Query: 61 DLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFA 120
+ + GIT + V AP FE +A ++ LNG+++ HN FD ++ F
Sbjct: 56 --QPIPSFIQQLTGITNDMVHGAPTFESIAPALYERLNGKLFVAHNA-SFDRGFLRSEFR 112
Query: 121 EIG 123
G
Sbjct: 113 RAG 115
>gi|423550694|ref|ZP_17527021.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
ISP3191]
gi|401189078|gb|EJQ96138.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
ISP3191]
Length = 315
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-QNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA++
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASI 171
>gi|374366509|ref|ZP_09624588.1| DNA polymerase III, epsilon subunit [Cupriavidus basilensis OR16]
gi|373101979|gb|EHP43021.1| DNA polymerase III, epsilon subunit [Cupriavidus basilensis OR16]
Length = 532
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
IVF DLETT G R + E G + V P +VE + TL+ P + + G
Sbjct: 33 IVFVDLETTGAD--GTRDRITEIGVVEVGPDGIVE---WDTLVDPG--IGIPPFIQQLTG 85
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
IT + V P FE +A + L G+++ HN RFD +K F +G
Sbjct: 86 ITDDMVRGQPTFESLAQTLAEQLQGKLFVAHNA-RFDYGFLKNEFRRVG 133
>gi|229197718|ref|ZP_04324438.1| DNA polymerase III alpha subunit [Bacillus cereus m1293]
gi|228585795|gb|EEK43893.1| DNA polymerase III alpha subunit [Bacillus cereus m1293]
Length = 315
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA++
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASI 171
>gi|387126543|ref|YP_006295148.1| DNA polymerase III subunit epsilon [Methylophaga sp. JAM1]
gi|386273605|gb|AFI83503.1| DNA polymerase III epsilon subunit [Methylophaga sp. JAM1]
Length = 482
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 7/135 (5%)
Query: 48 VELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNI 107
VE + + TLI P ++ S+ GIT V + P F ++A+++ L +V+ H++
Sbjct: 40 VETDRWQTLINPG--VSIPPWISKLTGITDPMVANQPSFADIAEELQQRLADKVFVAHHV 97
Query: 108 RRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKH 166
RFD I+E+F IG + L RR G + + + GL Q+H
Sbjct: 98 -RFDYGFIRESFRRIGITFSAKTLCSVKISRLLYPEQRRHG---IDAIVARLGLNINQRH 153
Query: 167 RSLDDVRMNLEVLKH 181
R++DD ++ LE+ +
Sbjct: 154 RAMDDAQVILELFQQ 168
>gi|295677334|ref|YP_003605858.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1002]
gi|295437177|gb|ADG16347.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
Length = 382
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 8/123 (6%)
Query: 1 MDGFIPSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK 60
M + + A A IVF DLETT + R + E G + V P + +S+L+ P+
Sbjct: 1 MSELLSPEPALDAPIVFVDLETTGGSTSEHR--ITEVGVVEVGP---AGVSRWSSLVDPQ 55
Query: 61 DLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFA 120
+ + GIT + V AP FE +A +F LNG+++ HN FD ++ F
Sbjct: 56 --QPIPSFIQQLTGITNDMVRGAPTFESIAPALFERLNGKLFVAHNA-SFDRGFLRSEFR 112
Query: 121 EIG 123
G
Sbjct: 113 RAG 115
>gi|49478968|ref|YP_037688.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|301055098|ref|YP_003793309.1| DNA polymerase III subunit epsilon [Bacillus cereus biovar
anthracis str. CI]
gi|49330524|gb|AAT61170.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|300377267|gb|ADK06171.1| DNA polymerase III subunit epsilon [Bacillus cereus biovar
anthracis str. CI]
Length = 315
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-QNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA++
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASI 171
>gi|334704346|ref|ZP_08520212.1| DNA polymerase III, epsilon subunit [Aeromonas caviae Ae398]
Length = 244
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 21/174 (12%)
Query: 16 VFFDLETTVPRRAGQRFW----VLEFGAIIVCPRKLVELESFSTLIKPK---DLSAVALK 68
+ D ETT AG + ++E G + V RKL F IKP D A+A+
Sbjct: 10 IILDTETTGMNTAGGPVYLGHRIIEIGCVEVINRKLTG-NHFHVYIKPDRLVDPEAIAVH 68
Query: 69 SSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG---KP 125
GIT + P F ++AD + G HN FD + + F+++G K
Sbjct: 69 -----GITDAFLADKPSFNQIADDFIEFIRGAELIAHNA-PFDVSFMDYEFSKLGLNFKT 122
Query: 126 APVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
A + G+ D+L + + F + N+ + L +G+ HR+L ++ E+L
Sbjct: 123 ADI-CGITDTLAMARDLFPGKRNNLDV--LCDRYGI-DNSHRTLHGALLDAEIL 172
>gi|114707953|ref|ZP_01440845.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Fulvimarina pelagi HTCC2506]
gi|114536582|gb|EAU39714.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Fulvimarina pelagi HTCC2506]
Length = 466
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 15/174 (8%)
Query: 18 FDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
FD ETT +P R +++ GAI + KLVE E+F TL+ P + SS+ GI
Sbjct: 277 FDTETTGLIPHRD----EIVQIGAIRIVDGKLVEGETFDTLVDPG--GPIPRASSKIHGI 330
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
T + V P E + F V HN FD + ++ +G P+ +D+
Sbjct: 331 TDKMVMGQPRIAEAGRRFFEFSKESVLVAHNA-PFDMSFLRRHEKAMGVAFDHPI--VDT 387
Query: 136 LGVLTEKFGRRAGNMKMATLASYFGL---GQQKHRSLDDVRMNLEVLKHCATVL 186
+ V FG +M + + G+ + +H +L D R+ E +K +L
Sbjct: 388 VLVSAIIFGTTERHM-LDVVCERLGIRIEKKDRHTALGDARVTAEAMKRMLPLL 440
>gi|228916240|ref|ZP_04079810.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228843438|gb|EEM88516.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 315
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA++
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASI 171
>gi|228934882|ref|ZP_04097713.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228824782|gb|EEM70583.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 315
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEPQN-KVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA++
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASI 171
>gi|336114205|ref|YP_004568972.1| DnaQ family exonuclease/DinG family helicase [Bacillus coagulans
2-6]
gi|335367635|gb|AEH53586.1| DnaQ family exonuclease/DinG family helicase [Bacillus coagulans
2-6]
Length = 930
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 97/202 (48%), Gaps = 27/202 (13%)
Query: 16 VFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
V DLETT + G R +++F A++V R++ F++ + P+ V S G
Sbjct: 5 VVVDLETTGNSAKKGDR--IIQFSAVVVEGREIKT--QFTSFVNPE--KPVPPFISELTG 58
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
I +E AP F E+A +I IL G ++ HN+ FD +++ G P P +D
Sbjct: 59 IDNGMLEEAPAFSEIAPRIMEILEGSIFVAHNV-LFDLPFLQQELKAAGFP-PFRGPSLD 116
Query: 135 SLGVLTEKFGRRA----GNMKMATLASYFGLGQQK-HRSLDD----VRMNLEVLKHCAT- 184
++ +F R A + K+ LA L ++ HR+ D ++ L ++ CA+
Sbjct: 117 TV-----EFSRIAFPTLSSYKLGDLADSLSLYHERPHRADSDAFVTAKLLLACMEKCASL 171
Query: 185 -VLFLESSLPNTFNSNLQSSLT 205
V+ LE +P ++ +L+S L
Sbjct: 172 PVVTLEQLVPLSY--SLKSDLA 191
>gi|23098512|ref|NP_691978.1| hypothetical protein OB1057 [Oceanobacillus iheyensis HTE831]
gi|22776738|dbj|BAC13013.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 195
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 19/165 (11%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D ET +R G +I+ ++++ F TLI P L++ + GIT E
Sbjct: 8 DFETANEKRNS----ACSVGVVIMNDTEIID--EFYTLINP--LASFRSGNVFIHGITEE 59
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP F E+ + + L + HN FD + ++++ + P P + +
Sbjct: 60 QVQEAPTFAELWPTLSAYLEDTILIAHN-ASFDMSVLRQSLNKYDIPCP------NYTSL 112
Query: 139 LTEKFGR----RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
T K R + N K+ T+A++ G+ H ++DD R + ++
Sbjct: 113 CTVKISRLIWPQLENHKLHTVANHHGIALNHHHAMDDARASAKIF 157
>gi|399053630|ref|ZP_10742429.1| DnaQ family exonuclease/DinG family helicase, putative
[Brevibacillus sp. CF112]
gi|398048407|gb|EJL40879.1| DnaQ family exonuclease/DinG family helicase, putative
[Brevibacillus sp. CF112]
Length = 966
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 12/115 (10%)
Query: 15 IVFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKP-KDLSAVALKSSR 71
++ D ETT PR+ +++ GA+ + ++ E FSTLI P +D+ ++
Sbjct: 4 LLVVDFETTGSHPRQGDS---IIQIGAVAIDDGQITE--CFSTLIHPGQDIPPFI---TQ 55
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPA 126
GIT E V AP EEV + +L+GRV+ HN FD ++EA G A
Sbjct: 56 LTGITNEMVADAPTLEEVFPQFLRLLDGRVFVAHNA-SFDLQFLQEALLSQGYYA 109
>gi|256851162|ref|ZP_05556551.1| ATP-dependent DNA helicase [Lactobacillus jensenii 27-2-CHN]
gi|260660586|ref|ZP_05861501.1| ATP-dependent DNA helicase [Lactobacillus jensenii 115-3-CHN]
gi|297206027|ref|ZP_06923422.1| ATP-dependent DNA helicase [Lactobacillus jensenii JV-V16]
gi|256616224|gb|EEU21412.1| ATP-dependent DNA helicase [Lactobacillus jensenii 27-2-CHN]
gi|260548308|gb|EEX24283.1| ATP-dependent DNA helicase [Lactobacillus jensenii 115-3-CHN]
gi|297149153|gb|EFH29451.1| ATP-dependent DNA helicase [Lactobacillus jensenii JV-V16]
Length = 936
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Query: 7 SQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVA 66
SQA DLETT RR R +++FG I+ R++++ SF LI PK + +
Sbjct: 2 SQALSDQVFAVVDLETTGTRRGQDR--IIQFGCAIIKNRQIIKTYSF--LINPK--ADIP 55
Query: 67 LKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKP 125
GI V + P F+ A +I IL V+ HNI FD + A G P
Sbjct: 56 QAVQNLTGIKPADVVNQPVFKNFATQIEDILQDTVFVAHNI-NFDLPFLNAELAANGFP 113
>gi|374607199|ref|ZP_09680000.1| DNA polymerase III, epsilon subunit [Mycobacterium tusciae JS617]
gi|373555035|gb|EHP81605.1| DNA polymerase III, epsilon subunit [Mycobacterium tusciae JS617]
Length = 627
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 73/172 (42%), Gaps = 19/172 (11%)
Query: 16 VFFDLETTVPRRAGQRF-WVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
V DLETT R +G + E GA+ V R L F+TL+ P ++ + G
Sbjct: 33 VVVDLETTGGRASGDNHDAITEIGAVKV--RGGEVLGEFATLVDPG--RSIPPQIVSLTG 88
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
IT V AP E V G V HN FD ++ A P P P
Sbjct: 89 ITTAMVCDAPRIESVLPAFLEFSRGAVLVAHNA-GFDIGFLRAAAERAHLPWPRP----- 142
Query: 135 SLGVLTEKFGRR------AGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVL 179
L + T + RR A +++++ LA FG HR+LDD R ++VL
Sbjct: 143 -LVLCTVRLARRVLTRDEAPSVRLSALARLFGASTTPTHRALDDARATVDVL 193
>gi|228959796|ref|ZP_04121471.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228799926|gb|EEM46868.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 318
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 12 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPDRITSLT 65
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 66 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 123
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA++
Sbjct: 124 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASI 174
>gi|433449434|ref|ZP_20412298.1| ATP-dependent helicase DinG [Weissella ceti NC36]
gi|429538948|gb|ELA06986.1| ATP-dependent helicase DinG [Weissella ceti NC36]
Length = 941
Score = 50.8 bits (120), Expect = 7e-04, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +++ V K++ +STLI P A+ + GI
Sbjct: 11 DLETTQTSTETGR--IIQIAIAFVQNNKIIN--QYSTLINPG--MAIPRHVVQLTGIDAS 64
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+SAP FE+VA + ++L G V+ HN+ FD + F +G P+ ID++
Sbjct: 65 MVKSAPNFEDVAHMVHAMLQGTVFVAHNV-NFDWPFLNAEFERVGL-TPLTGQAIDTV-T 121
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDDVRMNLEVL 179
L++ A ++ +A Y G+ H++ D EV
Sbjct: 122 LSQMLYPTAPGYRLIDMAQYLGIEHLNPHQADSDAATTAEVF 163
>gi|205373870|ref|ZP_03226672.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus coahuilensis m4-4]
Length = 194
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 10/107 (9%)
Query: 12 TAEIVFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKS 69
T V DLETT P+R G R +++ A ++ ++VE F++ + P + +
Sbjct: 3 THRYVVVDLETTGNSPKR-GDR--IIQLSACLIEHGEIVE--QFTSFLNPN--KTIPIFI 55
Query: 70 SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIK 116
GIT+ V+ AP FE++A K+ S+LN V+ HN+ FD + ++
Sbjct: 56 EELTGITQPMVDDAPNFEQIAPKLISMLNDSVFVAHNV-TFDLSFLQ 101
>gi|325068629|ref|ZP_08127302.1| hypothetical protein AoriK_12441 [Actinomyces oris K20]
Length = 204
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 14/177 (7%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V DLETT + E GA+ V R L FSTL+ P A+ + + GI
Sbjct: 23 VVVDLETTGGAPGARSL--TEIGAVKV--RGGQVLAEFSTLVNPG--VAIPAQITLLTGI 76
Query: 76 TREAVESAPEF----EEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
T V AP E D + + V HN RFD ++ A A + P P
Sbjct: 77 TNAMVAGAPGVRTCVEAFLDWADLLADDVVLVAHN-ARFDVGHLRGAAAALDLEWPEP-R 134
Query: 132 MIDSLGVLTEKFGR-RAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHCATVL 186
++D+L + + + R N K+ TLA++ G + HR+LDD R ++VL V+
Sbjct: 135 VLDTLALARKAWTRSEVPNHKLGTLAAFVGSQIRPTHRALDDARATVDVLHAALEVM 191
>gi|433642377|ref|YP_007288136.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070008]
gi|432158925|emb|CCK56227.1| Conserved protein of unknown function [Mycobacterium canettii CIPT
140070008]
Length = 645
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 81/204 (39%), Gaps = 31/204 (15%)
Query: 16 VFFDLETTVPRRAGQRF----WVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
V DLETT R G + E GA+ VC + L F+TL+ P+ ++ + R
Sbjct: 44 VVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAV--LGEFATLVNPQH--SIPPQIVR 99
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GIT V +AP + V F V HN FD ++ A P P
Sbjct: 100 LTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNA-GFDIGFLRAAARRCDITWPQPQV 158
Query: 132 MIDSLGVLTEKFGRR------AGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVL----- 179
+ T + RR A ++ +A LA F + HR+LDD R ++VL
Sbjct: 159 LC------TMRLARRVLSRDEAPSVHLAALARLFAVASNPTHRALDDARATVDVLHALIE 212
Query: 180 ----KHCATVLFLESSLPNTFNSN 199
+ T L S LPN +
Sbjct: 213 RVGNQGVHTYAELRSYLPNVTQAQ 236
>gi|421470763|ref|ZP_15919119.1| exonuclease [Burkholderia multivorans ATCC BAA-247]
gi|400227002|gb|EJO57027.1| exonuclease [Burkholderia multivorans ATCC BAA-247]
Length = 375
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 86/192 (44%), Gaps = 16/192 (8%)
Query: 1 MDGFIPSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK 60
M PS A +VF DLETT A R + E G + + P + + +++TL+ P
Sbjct: 1 MSDSCPSDPASEQPLVFVDLETTGGTPAEHR--ITEIGVVEIGP---LGVSTWTTLVNPG 55
Query: 61 DLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFA 120
+ + GI+ V AP F E+A +F L+G+++ HN FD ++ F
Sbjct: 56 --QPIPPFIQQLTGISDAMVRDAPSFAELAPALFERLDGKLFVAHNA-SFDRGFLRAEFE 112
Query: 121 EIG---KPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLE 177
G P ++ ++ + F R + + A +A + + +HR+L D + +
Sbjct: 113 RAGFAFNP-----DVLCTVRLSRALFPRESRHGLDALIARHGLVPAARHRALADADLLWQ 167
Query: 178 VLKHCATVLFLE 189
+H V+ LE
Sbjct: 168 FWRHLHDVVPLE 179
>gi|47567894|ref|ZP_00238601.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus G9241]
gi|47555372|gb|EAL13716.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus G9241]
Length = 303
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 3/112 (2%)
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 66 GITNYRVSDAPTIEEVLPLFLAFLHKNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 123
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA++
Sbjct: 124 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASI 174
>gi|347525374|ref|YP_004832122.1| DinG family ATP-dependent helicase [Lactobacillus ruminis ATCC
27782]
gi|345284333|gb|AEN78186.1| ATP-dependent helicase, DinG family [Lactobacillus ruminis ATCC
27782]
Length = 968
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 17/152 (11%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLE T G +++F + K+V +FSTLI P L + IT +
Sbjct: 44 DLEMTGTNPNGSE-RLIQFSCVFTEGNKIVN--TFSTLINP--LRKIPEDVQNLTNITDK 98
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V++AP F+EVA I+++L+ V+ HNI D + F IG P +D G+
Sbjct: 99 DVKNAPTFDEVAGTIYALLSDTVFVAHNI-ELDYRFLNSEFERIGFPK------LDLEGI 151
Query: 139 LTEKFGRRA----GNMKMATLASYFGLGQQKH 166
T + + A + ++ LA ++G + KH
Sbjct: 152 DTVQLAQIAFPTLASYRLGDLAHFWGF-KHKH 182
>gi|52141929|ref|YP_084901.1| DNA polymerase III subunit epsilon [Bacillus cereus E33L]
gi|51975398|gb|AAU16948.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L]
Length = 315
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 3/112 (2%)
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPVFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA++
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASI 171
>gi|423628691|ref|ZP_17604440.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD154]
gi|401269216|gb|EJR75251.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD154]
Length = 315
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA++
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASI 171
>gi|165976701|ref|YP_001652294.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|165876802|gb|ABY69850.1| DNA polymerase III epsilon chain [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
Length = 257
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 75/172 (43%), Gaps = 17/172 (9%)
Query: 16 VFFDLETTV-----PRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
V D ETT P + G ++E GA+ V R+L +F IKP V ++
Sbjct: 10 VVLDTETTGMSFSGPPQIGHN--IIEIGAVEVINRRLTG-RTFHVYIKPP--REVEEEAI 64
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
+ GIT E ++ P F EVAD+ + G HN FD A + + F+ + P P
Sbjct: 65 KVHGITNEFLQDRPVFAEVADEFIEFIKGAELIIHN-APFDVAFMDQEFSYLENPPPKTA 123
Query: 131 GM---IDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
M DSL V + + + N+ L G+ K R L ++ E+L
Sbjct: 124 EMCSVTDSLAVARKMYPGKRNNLD--ALCDRLGIDNSK-RVLHGALLDAEIL 172
>gi|222099063|ref|YP_002533631.1| DNA polymerase III PolC [Thermotoga neapolitana DSM 4359]
gi|221571453|gb|ACM22265.1| DNA polymerase III polC-type [Thermotoga neapolitana DSM 4359]
Length = 1367
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 17/168 (10%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V FD ETT Q ++E GA+ + ++++ + TLIKP ++ KS+ GI
Sbjct: 361 VVFDFETT--GLDPQVDEIIEIGAVKIKEGRIID--EYHTLIKPS--GTISRKSAEITGI 414
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIR---RFDCARIKEAFAEIGKPAPVPVGM 132
T+E +E EEV + L + HN RF IK+ +GK P
Sbjct: 415 TQEMLEGERAIEEVLPEFLEFLEDSILVAHNANFDYRFLRLWIKKV---LGKDWEKP--Y 469
Query: 133 IDSLGVLTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDDVRMNLEVL 179
+D+L + R + + ++ GLG + HR+LDD R+ +V
Sbjct: 470 VDTLALAKSLL--RLKSYSLDSVVKKLGLGSFRHHRALDDARVTAQVF 515
>gi|330829021|ref|YP_004391973.1| DNA polymerase III subunit epsilon [Aeromonas veronii B565]
gi|423210287|ref|ZP_17196841.1| DNA polymerase III, epsilon subunit [Aeromonas veronii AER397]
gi|328804157|gb|AEB49356.1| DNA polymerase III, epsilon subunit [Aeromonas veronii B565]
gi|404616175|gb|EKB13133.1| DNA polymerase III, epsilon subunit [Aeromonas veronii AER397]
Length = 244
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 15/171 (8%)
Query: 16 VFFDLETTVPRRAGQRFW----VLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
+ D ETT AG + ++E G + V RKL + IKP L V ++ +
Sbjct: 10 IILDTETTGMNTAGGPVYLGHRIIEIGCVEVINRKLTG-NHYHVYIKPDRL--VDPEAIQ 66
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG---KPAPV 128
GIT E + P F ++AD+ + G HN FD + + F+++G K A +
Sbjct: 67 VHGITDEFLRDKPSFSQIADEFLEFIRGAELIAHNA-PFDVSFMDYEFSKLGLNFKTADI 125
Query: 129 PVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
+ D+L + + F + N+ + L +G+ HR+L ++ E+L
Sbjct: 126 -CTITDTLAMARDLFPGKRNNLDV--LCDRYGI-DNSHRTLHGALLDAEIL 172
>gi|441500072|ref|ZP_20982242.1| DNA polymerase III epsilon subunit [Fulvivirga imtechensis AK7]
gi|441436163|gb|ELR69537.1| DNA polymerase III epsilon subunit [Fulvivirga imtechensis AK7]
Length = 455
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 50 LESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
++S+ TL+ P + GI + VESAP FEEVA ++F +L RV+ HN+
Sbjct: 33 VDSYETLVNPGQYIPSYITG--LTGINQHMVESAPTFEEVAGEVFELLRDRVFIAHNV-H 89
Query: 110 FDCARIKEAFAEIGKP 125
FD + +K F ++ P
Sbjct: 90 FDYSFLKREFEKLKLP 105
>gi|289755840|ref|ZP_06515218.1| LOW QUALITY PROTEIN: DNA polymerase III subunit epsilon
[Mycobacterium tuberculosis EAS054]
gi|289696427|gb|EFD63856.1| LOW QUALITY PROTEIN: DNA polymerase III subunit epsilon
[Mycobacterium tuberculosis EAS054]
Length = 330
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 16/129 (12%)
Query: 51 ESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRF 110
+S +L+ PK V + G+T ++ P+F ++A ++ +L GR HN+ F
Sbjct: 49 QSVVSLLNPK----VDPGPTHVHGLTAAMLDDQPQFADIAGEVVDVLRGRTLVAHNV-AF 103
Query: 111 DCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRR----AGNMKMATLASYFGLGQQK- 165
D A + PV M T + RR N+++ TLA+++G+ QQ+
Sbjct: 104 DYAFLAAEAEIAEAELPVDFVMC------TVELARRLQLGVDNLRLETLAAHWGVPQQRP 157
Query: 166 HRSLDDVRM 174
H + DD R+
Sbjct: 158 HDAFDDARV 166
>gi|209695823|ref|YP_002263753.1| DNA polymerase III subunit epsilon [Aliivibrio salmonicida LFI1238]
gi|208009776|emb|CAQ80082.1| DNA polymerase III, epsilon chain [Aliivibrio salmonicida LFI1238]
Length = 243
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 24/177 (13%)
Query: 15 IVFFDLETTVPRRAGQRFW----VLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
I+ D ETT +G + ++E GA+ + RKL F IKP L + L++
Sbjct: 11 IIVLDTETTGMNLSGGPIYEGHRIIEIGAVEIINRKLTG-NHFHVYIKPDRL--IDLEAI 67
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
GIT E + PE++++ D+ + + G HN FD + F+++ K +
Sbjct: 68 DVHGITDEFLYGKPEYKDIHDEFLAFIKGAELVAHN-APFDVGFMDYEFSKLNK----LI 122
Query: 131 GMIDSLGVLTEKF--------GRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
G D +T+ G+R + L +G+ HR+L ++ E+L
Sbjct: 123 GTTDQYCKITDTLAMAKKISPGKRN---NLDVLCGRYGI-DNSHRTLHGALLDAEIL 175
>gi|226312093|ref|YP_002771987.1| ATP-dependent helicase [Brevibacillus brevis NBRC 100599]
gi|226095041|dbj|BAH43483.1| probable ATP-dependent helicase [Brevibacillus brevis NBRC 100599]
Length = 967
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 15 IVFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKP-KDLSAVALKSSR 71
++ D ETT PR+ +++ GA+ + ++ E SFSTLI P +D+ ++
Sbjct: 4 LLVVDFETTGSHPRQGDS---IIQIGAVAIDDGQITE--SFSTLIHPGQDIPPFI---TQ 55
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPA 126
GIT E V AP EEV +L+GR + HN FD ++EA G A
Sbjct: 56 LTGITNEMVADAPSLEEVFPDFLRLLDGRAFVAHNA-SFDLQFLQEALLSQGYYA 109
>gi|289572362|ref|ZP_06452589.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
K85]
gi|289536793|gb|EFD41371.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
K85]
Length = 329
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 16/129 (12%)
Query: 51 ESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRF 110
+S +L+ PK V + G+T ++ P+F ++A ++ +L GR HN+ F
Sbjct: 49 QSVVSLLNPK----VDPGPTHVHGLTAAMLDDQPQFADIAGEVVDVLRGRTLVAHNV-AF 103
Query: 111 DCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRR----AGNMKMATLASYFGLGQQK- 165
D A + PV M T + RR N+++ TLA+++G+ QQ+
Sbjct: 104 DYAFLAAEAEIAEAELPVDFVMC------TVELARRLQLGVDNLRLETLAAHWGVPQQRP 157
Query: 166 HRSLDDVRM 174
H + DD R+
Sbjct: 158 HDAFDDARV 166
>gi|229128882|ref|ZP_04257858.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-Cer4]
gi|228654587|gb|EEL10449.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-Cer4]
Length = 318
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 12 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPDRITSLT 65
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 66 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 123
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA +
Sbjct: 124 DTV-FLAKKYMKHATNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAI 174
>gi|385208477|ref|ZP_10035345.1| exonuclease, DNA polymerase III, epsilon subunit family
[Burkholderia sp. Ch1-1]
gi|385180815|gb|EIF30091.1| exonuclease, DNA polymerase III, epsilon subunit family
[Burkholderia sp. Ch1-1]
Length = 383
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 9/120 (7%)
Query: 4 FIPSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLS 63
F+P + A IVF DLETT A R + E G + V P + +S+L+ P+
Sbjct: 5 FLP-EPALDGPIVFVDLETTGGSTAEHR--ITEVGVVEVGP---AGVSRWSSLVDPQ--Q 56
Query: 64 AVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
+ + GIT V AP FE +A +F LNG+++ HN FD ++ F +G
Sbjct: 57 PIPSFIQQLTGITNAMVRGAPTFEAIAPALFERLNGKLFVAHNA-SFDRGFLRGEFRRVG 115
>gi|398816058|ref|ZP_10574716.1| DnaQ family exonuclease/DinG family helicase, putative
[Brevibacillus sp. BC25]
gi|398033405|gb|EJL26708.1| DnaQ family exonuclease/DinG family helicase, putative
[Brevibacillus sp. BC25]
Length = 967
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 15 IVFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKP-KDLSAVALKSSR 71
++ D ETT PR+ +++ GA+ + ++ E SFSTLI P +D+ ++
Sbjct: 4 LLVVDFETTGSHPRQGDS---IIQIGAVAIDDGQITE--SFSTLIHPGQDIPPFI---TQ 55
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPA 126
GIT E V AP EEV +L+GR + HN FD ++EA G A
Sbjct: 56 LTGITNEMVADAPSLEEVFPDFLRLLDGRAFVAHNA-SFDLQFLQEALLSQGYYA 109
>gi|59712542|ref|YP_205318.1| DNA polymerase III subunit epsilon [Vibrio fischeri ES114]
gi|59480643|gb|AAW86430.1| DNA polymerase III epsilon subunit [Vibrio fischeri ES114]
Length = 243
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 18/174 (10%)
Query: 15 IVFFDLETTV------PRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALK 68
I+ D ETT P G R ++E GA+ + RKL F IKP L + L+
Sbjct: 11 IIVLDTETTGMNFSGGPVYEGHR--IVEIGAVEIINRKLTG-NHFHVYIKPDRL--IDLE 65
Query: 69 SSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGK---P 125
+ GIT E + PE++++ D+ + G HN FD + F+++ K
Sbjct: 66 AIDVHGITDEFLYDKPEYKDIHDEFLEFIKGAELVAHN-APFDVGFMDYEFSKLNKLIGT 124
Query: 126 APVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
+ D+L + + F + N+ + L +G+ HR+L ++ E+L
Sbjct: 125 TDQYCKITDTLAMAKKIFPGKRNNLDV--LCERYGI-DNSHRTLHGALLDAEIL 175
>gi|410865804|ref|YP_006980415.1| GIY-YIG catalytic domain-containing protein [Propionibacterium
acidipropionici ATCC 4875]
gi|410822445|gb|AFV89060.1| GIY-YIG catalytic domain-containing protein [Propionibacterium
acidipropionici ATCC 4875]
Length = 604
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 64/148 (43%), Gaps = 8/148 (5%)
Query: 34 VLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKI 93
+ E GA+ V R L +TL++P S + GIT E V AP V
Sbjct: 41 ITEIGAVKV--RGGEVLGELATLVRPG--SHIRGSVQMLTGITDEMVADAPSIGSVLPSW 96
Query: 94 FSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGR-RAGNMKM 152
G V HN RFD ++ A +P P ++D+L + GR + K+
Sbjct: 97 LEFSRGCVLVAHNA-RFDIGFLRRACDAHDRPWPGNT-VLDTLALARSCLGRDEVHDHKL 154
Query: 153 ATLASYF-GLGQQKHRSLDDVRMNLEVL 179
TLA YF HR+LDD R ++V+
Sbjct: 155 GTLARYFSATTSPSHRALDDARATVDVM 182
>gi|402556268|ref|YP_006597539.1| DNA polymerase III subunit epsilon [Bacillus cereus FRI-35]
gi|401797478|gb|AFQ11337.1| DNA polymerase III subunit epsilon [Bacillus cereus FRI-35]
Length = 315
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ ++ + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RSIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA +
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAFI 171
>gi|31794883|ref|NP_857376.1| DNA polymerase III subunit epsilon [Mycobacterium bovis AF2122/97]
gi|121639627|ref|YP_979851.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224992123|ref|YP_002646812.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str.
Tokyo 172]
gi|289445310|ref|ZP_06435054.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
CPHL_A]
gi|339633703|ref|YP_004725345.1| DNA polymerase III subunit epsilon [Mycobacterium africanum
GM041182]
gi|378773490|ref|YP_005173223.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str.
Mexico]
gi|386006518|ref|YP_005924797.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
RGTB423]
gi|433628854|ref|YP_007262483.1| Putative DNA Polymerase III (epsilon subunit) DnaQ [Mycobacterium
canettii CIPT 140060008]
gi|433643901|ref|YP_007289660.1| Putative DNA Polymerase III (epsilon subunit) DnaQ [Mycobacterium
canettii CIPT 140070008]
gi|449065826|ref|YP_007432909.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str.
Korea 1168P]
gi|31620481|emb|CAD95924.1| PUTATIVE DNA POLYMERASE III (EPSILON SUBUNIT) DNAQ [Mycobacterium
bovis AF2122/97]
gi|121495275|emb|CAL73761.1| Putative dna polymerase III (epsilon subunit) dnaQ [Mycobacterium
bovis BCG str. Pasteur 1173P2]
gi|224775238|dbj|BAH28044.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str.
Tokyo 172]
gi|289418268|gb|EFD15469.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
CPHL_A]
gi|339333059|emb|CCC28789.1| putative DNA polymerase III (epsilon subunit) DnaQ [Mycobacterium
africanum GM041182]
gi|341603648|emb|CCC66329.1| putative DNA polymerase III (epsilon subunit) dnaQ [Mycobacterium
bovis BCG str. Moreau RDJ]
gi|356595811|gb|AET21040.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str.
Mexico]
gi|380727006|gb|AFE14801.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis
RGTB423]
gi|432156460|emb|CCK53718.1| Putative DNA Polymerase III (epsilon subunit) DnaQ [Mycobacterium
canettii CIPT 140060008]
gi|432160449|emb|CCK57774.1| Putative DNA Polymerase III (epsilon subunit) DnaQ [Mycobacterium
canettii CIPT 140070008]
gi|449034334|gb|AGE69761.1| DNA polymerase III subunit epsilon [Mycobacterium bovis BCG str.
Korea 1168P]
Length = 329
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 16/129 (12%)
Query: 51 ESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRF 110
+S +L+ PK V + G+T ++ P+F ++A ++ +L GR HN+ F
Sbjct: 49 QSVVSLLNPK----VDPGPTHVHGLTAAMLDDQPQFADIAGEVVDVLRGRTLVAHNV-AF 103
Query: 111 DCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRR----AGNMKMATLASYFGLGQQK- 165
D A + PV M T + RR N+++ TLA+++G+ QQ+
Sbjct: 104 DYAFLAAEAEIAEAELPVDFVMC------TVELARRLQLGVDNLRLETLAAHWGVPQQRP 157
Query: 166 HRSLDDVRM 174
H + DD R+
Sbjct: 158 HDAFDDARV 166
>gi|421215222|ref|ZP_15672150.1| exonuclease family protein [Streptococcus pneumoniae 2070109]
gi|395581355|gb|EJG41827.1| exonuclease family protein [Streptococcus pneumoniae 2070109]
Length = 196
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 26/161 (16%)
Query: 49 ELESFSTLIKPKDLSAVALKS--SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHN 106
E++++ + + ++V+LKS + GIT E ++ AP E+V +K + + G+N
Sbjct: 36 EIDAYDSYVH----TSVSLKSFINGLTGITAETLKDAPPVEKVLEKFQEFVGSLLMIGYN 91
Query: 107 IRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRA------GNMKMATLASYFG 160
+ D + E + + V + E F RR+ N+K+ T+AS+ G
Sbjct: 92 AAKSDLPILAEHGLDYSQQYKVDL--------YDEAFERRSSDLHGIANLKLQTVASFLG 143
Query: 161 LGQQKHRSLDDVRMNLEVLK------HCATVLFLESSLPNT 195
Q H SL+D RM V + +L ESSL N
Sbjct: 144 FQGQSHNSLEDARMTARVYESFLESDQARELLETESSLSNN 184
>gi|340628685|ref|YP_004747137.1| putative DNA polymerase III [Mycobacterium canettii CIPT 140010059]
gi|340006875|emb|CCC46064.1| putative DNA polymerase III (epsilon subunit) DNAQ [Mycobacterium
canettii CIPT 140010059]
Length = 329
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 16/129 (12%)
Query: 51 ESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRF 110
+S +L+ PK V + G+T ++ P+F ++A ++ +L GR HN+ F
Sbjct: 49 QSVVSLLNPK----VDPGPTHVHGLTAAMLDDQPQFADIAGEVVDVLRGRTLVAHNV-AF 103
Query: 111 DCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRR----AGNMKMATLASYFGLGQQK- 165
D A + PV M T + RR N+++ TLA+++G+ QQ+
Sbjct: 104 DYAFLAAEAEIAEAELPVDFVMC------TVELARRLQLGVDNLRLETLAAHWGVPQQRP 157
Query: 166 HRSLDDVRM 174
H + DD R+
Sbjct: 158 HDAFDDARV 166
>gi|289748229|ref|ZP_06507607.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
T92]
gi|289688816|gb|EFD56245.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
T92]
Length = 329
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 16/129 (12%)
Query: 51 ESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRF 110
+S +L+ PK V + G+T ++ P+F ++A ++ +L GR HN+ F
Sbjct: 49 QSVVSLLNPK----VDPGPTHVHGLTAAMLDDQPQFADIAGEVVDVLRGRTLVAHNV-AF 103
Query: 111 DCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRR----AGNMKMATLASYFGLGQQK- 165
D A + PV M T + RR N+++ TLA+++G+ QQ+
Sbjct: 104 DYAFLAAEAEIAEAELPVDFVMC------TVELARRLQLGVDNLRLETLAAHWGVPQQRP 157
Query: 166 HRSLDDVRM 174
H + DD R+
Sbjct: 158 HDAFDDARV 166
>gi|456012887|gb|EMF46575.1| DNA polymerase III epsilon subunit [Planococcus halocryophilus Or1]
Length = 202
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 81/174 (46%), Gaps = 25/174 (14%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAI--IVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
V D ETT R + +++ GA+ I RK E+ ++ P+ +++ +R
Sbjct: 43 VVLDFETTGLRAGNDK--IIQIGAVKYINHERK----ETMYLMVNPQ--CSISSTITRIT 94
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVP-VGM 132
GIT + VE+AP EE+A ++ + + G HN FD + A +I P+P +
Sbjct: 95 GITNKDVENAPVIEEIAHELVAFIGGMPIIAHN-APFDMGFLY-ALEDI---TPIPEYTV 149
Query: 133 IDSLGVLTEKFGRRA----GNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
ID++ + RRA N K+ TL ++ L H +L D + ++C
Sbjct: 150 IDTV-----RLARRAITQTPNHKLTTLTAFLKLEHDAHDALGDCLATAAIYQYC 198
>gi|330444105|ref|YP_004377091.1| DNA polymerase III subunit epsilon [Chlamydophila pecorum E58]
gi|328807215|gb|AEB41388.1| DNA polymerase III epsilon chain [Chlamydophila pecorum E58]
Length = 249
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Query: 50 LESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSIL-NGRVWAGHNIR 108
L+S LI P+ V+++S R I+ +++ P+F V KI + L + GH++
Sbjct: 40 LDSIEFLINPE--KEVSIESQRIHHISNAMLKNQPKFAAVYPKIKAFLKDDDNIVGHSVG 97
Query: 109 RFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQ-KHR 167
FD + + +G+ P +ID+L L +++G N + +LA +F + HR
Sbjct: 98 -FDLQVLAQEVERLGETFPTKYHVIDTLR-LAKEYGDSPNN-SLESLAVHFNVPYDGNHR 154
Query: 168 SLDDVRMNLEVLKH 181
++ DV +N+ + KH
Sbjct: 155 AMKDVEINISIFKH 168
>gi|30021712|ref|NP_833343.1| DNA polymerase III subunit epsilon [Bacillus cereus ATCC 14579]
gi|29897267|gb|AAP10544.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579]
Length = 315
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA +
Sbjct: 121 DTV-FLAKKYMKHATNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAI 171
>gi|347542459|ref|YP_004857096.1| DNA polymerase III PolC [Candidatus Arthromitus sp. SFB-rat-Yit]
gi|346985495|dbj|BAK81170.1| DNA polymerase III PolC [Candidatus Arthromitus sp. SFB-rat-Yit]
Length = 1398
Score = 50.4 bits (119), Expect = 8e-04, Method: Composition-based stats.
Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 11/172 (6%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V FD+ETT ++ ++E GA+ + ++++ FST + P+ + + + I
Sbjct: 383 VVFDIETTGFSNVSEK--IIEIGAVKIKNGEIID--EFSTFVNPEKV--IPFNITELTSI 436
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVP-VGMID 134
+ E V SAP E++ K + +G V HNI FD + I+ + G + ID
Sbjct: 437 SNEMVASAPVIEDIIGKFYDFCSGAVLVAHNI-DFDMSFIRRNGDKFGYSFKNSLLDTID 495
Query: 135 SLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVL 186
+L + R N+ LA HR++DD R +L C +L
Sbjct: 496 ICKLLFPELKRYRLNVVAKHLAIPL---DNHHRAVDDARATAIILIKCFEIL 544
>gi|237732820|ref|ZP_04563301.1| DNA polymerase III subunit epsilon [Mollicutes bacterium D7]
gi|229384061|gb|EEO34152.1| DNA polymerase III subunit epsilon [Coprobacillus sp. D7]
Length = 224
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 84/190 (44%), Gaps = 21/190 (11%)
Query: 3 GFIPSQA---AGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLI-- 57
GFI + E V FDLETT + R ++E GAI V ++V+ FSTL
Sbjct: 26 GFIDEETLTIQSIQEYVVFDLETTGFNKKEDR--IIEIGAIKVKNGRVVD--RFSTLCAP 81
Query: 58 ----KPKDLSAVALKSSRCDGITR-EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDC 112
KP +SA K + GI + + PE E V + + + ++ HN +FD
Sbjct: 82 IKGGKPMYISA---KITEVTGIKNVDLLNQIPESEAVKNFMCWLGESKISVAHNGLKFDI 138
Query: 113 ARIKEAFAEIG---KPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSL 169
+KEA K + M+ S + G N K TLA YFG+ Q HR++
Sbjct: 139 PFLKEACKRSNVEFKFTHILDTMLLSKALNYVNNGNIPNN-KQETLARYFGVDYQAHRAV 197
Query: 170 DDVRMNLEVL 179
+D L++
Sbjct: 198 NDCEALLKIF 207
>gi|423385126|ref|ZP_17362382.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG1X1-2]
gi|423528518|ref|ZP_17504963.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuB1-1]
gi|401638222|gb|EJS55973.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG1X1-2]
gi|402450857|gb|EJV82683.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuB1-1]
Length = 315
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA +
Sbjct: 121 DTV-FLVKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAI 171
>gi|330995701|ref|ZP_08319599.1| exonuclease [Paraprevotella xylaniphila YIT 11841]
gi|329574760|gb|EGG56321.1| exonuclease [Paraprevotella xylaniphila YIT 11841]
Length = 256
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 69/166 (41%), Gaps = 10/166 (6%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+VFFDLETT R ++E I V P ES S I P+ + SS G
Sbjct: 9 VVFFDLETTGINITNDR--IVELCYIKVYPNG--NEESKSMRINPE--MHIPESSSAIHG 62
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
I E V P F++VA + + + G +AG N RFD + E F G +
Sbjct: 63 IYDEDVADCPTFKQVAKDLANTIKGCDFAGFNSNRFDVPMLVEEFLRAGIDIDIRKRKFI 122
Query: 135 SLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
+ + K RR + A Y G + H +L D R EVL
Sbjct: 123 DVQNIYHKLERRTLS---AAYKFYCGKDLENAHSALADTRATYEVL 165
>gi|237804887|ref|YP_002889041.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
B/TZ1A828/OT]
gi|376282546|ref|YP_005156372.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis A2497]
gi|385270240|ref|YP_005813400.1| Exonuclease family protein [Chlamydia trachomatis A2497]
gi|231273187|emb|CAX10100.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
B/TZ1A828/OT]
gi|347975380|gb|AEP35401.1| Exonuclease family protein [Chlamydia trachomatis A2497]
gi|371908576|emb|CAX09206.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis A2497]
gi|438690471|emb|CCP49728.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis A/7249]
gi|438691556|emb|CCP48830.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis A/5291]
gi|438692929|emb|CCP47931.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis A/363]
Length = 250
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 12/172 (6%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
E V D ETT R V+EF AI ++++ S LI P+ AV+ +S +
Sbjct: 7 VEFVCLDCETTGLDVKKDR--VIEFAAIRFTFDEIID--SVEFLIHPE--RAVSAESQKI 60
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVW-AGHNIRRFDCARIKEAFAEIGKPA-PVPV 130
I+ + P+F EV +I R GH++ FD + + +G+ P
Sbjct: 61 HKISDAMLRDKPKFGEVFSRIKGFFKERDHIVGHHVG-FDLQVLSQESERLGETLLPKHH 119
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLKH 181
+ID+L L +++G N + LA +F + Q HR++ DV MN++V KH
Sbjct: 120 YVIDTLR-LAKEYGDSPNN-SLEALARHFNVPHQGNHRAMKDVEMNVKVFKH 169
>gi|289441146|ref|ZP_06430890.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
T46]
gi|289414065|gb|EFD11305.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
T46]
Length = 319
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 16/129 (12%)
Query: 51 ESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRF 110
+S +L+ PK V + G+T ++ P+F ++A ++ +L GR HN+ F
Sbjct: 49 QSVVSLLNPK----VDPGPTHVHGLTAAMLDDQPQFADIAGEVVDVLRGRTLVAHNV-AF 103
Query: 111 DCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRR----AGNMKMATLASYFGLGQQK- 165
D A + PV M T + RR N+++ TLA+++G+ QQ+
Sbjct: 104 DYAFLAAEAEIAEAELPVDFVMC------TVELARRLQLGVDNLRLETLAAHWGVPQQRP 157
Query: 166 HRSLDDVRM 174
H + DD R+
Sbjct: 158 HDAFDDARV 166
>gi|94312850|ref|YP_586059.1| DNA polymerase III, epsilon subunit [Cupriavidus metallidurans
CH34]
gi|93356702|gb|ABF10790.1| DNA polymerase III, epsilon subunit [Cupriavidus metallidurans
CH34]
Length = 530
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 85/196 (43%), Gaps = 32/196 (16%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
IVF DLETT QR + E G + V P + E + TL+ P L+++ G
Sbjct: 35 IVFVDLETTGA--DAQRDRITEIGVVEVGPDGIQE---WDTLVDP--LTSIPPFVQGLTG 87
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV---- 130
IT E V P F +A+ + L GR++ HN RFD +K F G V
Sbjct: 88 ITDEMVRGQPTFALIAEALAEKLQGRLFVAHNA-RFDYGFLKNEFRRAGVTFRADVLCTL 146
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQ-KHRSLDDVRM------------NLE 177
+ SL E+ G + L + FGL + +HR+L D + +++
Sbjct: 147 RLSRSLFPSVERHG-------LDALIARFGLTPKGRHRALADAELLWQFWQKIHEIYSVD 199
Query: 178 VLKHCATVLFLESSLP 193
+++ T L +SLP
Sbjct: 200 LVESAVTSLVKHASLP 215
>gi|365845523|ref|ZP_09386289.1| DNA polymerase III, alpha subunit [Flavonifractor plautii ATCC
29863]
gi|373115402|ref|ZP_09529576.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lachnospiraceae bacterium 7_1_58FAA]
gi|364560056|gb|EHM38012.1| DNA polymerase III, alpha subunit [Flavonifractor plautii ATCC
29863]
gi|371670468|gb|EHO35549.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lachnospiraceae bacterium 7_1_58FAA]
Length = 1386
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 11/161 (6%)
Query: 12 TAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
T +IV FD+ETT + +R + E GA+++ ++VE FST P+ + + +
Sbjct: 361 TGDIVCFDIETTGLDK--RRDVITEIGAVVLRNGEVVE--QFSTFADPE--RPLTREITE 414
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GIT E + AP E + + R A HN FD I E +G+ P
Sbjct: 415 LTGITDEMLRGAPSQAEAINAFLDFVGERPLAAHNA-EFDMGFIAEGCRRMGR--PFDST 471
Query: 132 MIDSLGVLTEKFGRRAGNMKMATLASYFGL-GQQKHRSLDD 171
ID+L +L + G K+ +A + L HR+ DD
Sbjct: 472 SIDTL-ILAQNLLPELGKHKLDIVAEHLNLPAFNHHRAYDD 511
>gi|306829204|ref|ZP_07462394.1| DnaQ family exonuclease/DinG family helicase [Streptococcus mitis
ATCC 6249]
gi|304428290|gb|EFM31380.1| DnaQ family exonuclease/DinG family helicase [Streptococcus mitis
ATCC 6249]
Length = 830
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 90/199 (45%), Gaps = 20/199 (10%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V DLE T G + +++ G +++ ++V+ ++T + P + +K G+
Sbjct: 10 VVVDLEAT---STGSKAKIIQVGIVVIENGEIVD--QYATDVNPHEPLDSHIKE--LTGL 62
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVP-VGMID 134
T + + +APEF +VA KIF ++ V+ HN+ +FD + E G P V ++
Sbjct: 63 TDQRLAAAPEFSQVAGKIFELVKDGVFVAHNV-QFDANLLAEFLFFEGYELRTPRVDTVE 121
Query: 135 SLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHCATVLF------ 187
VL +F + + L G+ +Q H +L D + E+L + LF
Sbjct: 122 LAQVLYPQFEK----YNLGILCQELGIELEQAHTALSDAQATAELLLYMRQKLFELPKGL 177
Query: 188 LESSLPNTFNSNLQSSLTV 206
LES L N +S L +
Sbjct: 178 LESLLDLADNLLYESYLVI 196
>gi|222147020|ref|YP_002547977.1| DNA polymerase III subunit epsilon [Agrobacterium vitis S4]
gi|221734010|gb|ACM34973.1| DNA polymerase III epsilon chain [Agrobacterium vitis S4]
Length = 236
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 10/166 (6%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
+ FD ETT R V+E G I + SF I P D A+ + GI
Sbjct: 4 IVFDTETTGLESKLDR--VIEIGGIELF-NHFPTGRSFHVYINPAD-RAIHPDALAVHGI 59
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
T E ++ P F ++ + + + +G W HN FD I F +G+P P +ID+
Sbjct: 60 TPEFLKDKPVFADIVEDLVAFFDGAKWVAHNA-TFDMGFINAEFERLGRPLVGPEHVIDT 118
Query: 136 LGVLTEKFGRRAGNMKMATLASYFGLG---QQKHRSLDDVRMNLEV 178
L + K G + L +G+ + KH +L D + EV
Sbjct: 119 LSLARRK--HPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEV 162
>gi|433636818|ref|YP_007270445.1| Putative DNA Polymerase III (epsilon subunit) DnaQ [Mycobacterium
canettii CIPT 140070017]
gi|432168411|emb|CCK65947.1| Putative DNA Polymerase III (epsilon subunit) DnaQ [Mycobacterium
canettii CIPT 140070017]
Length = 329
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 16/129 (12%)
Query: 51 ESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRF 110
+S +L+ PK V + G+T ++ P+F ++A ++ +L GR HN+ F
Sbjct: 49 QSVVSLLNPK----VDPGPTHVHGLTAAMLDDQPQFADIAGEVVDVLRGRTLVAHNV-AF 103
Query: 111 DCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRR----AGNMKMATLASYFGLGQQK- 165
D A + PV M T + RR N+++ TLA+++G+ QQ+
Sbjct: 104 DYAFLAAEAEIAEAELPVDFVMC------TVELARRLQLGVDNLRLETLAAHWGVPQQRP 157
Query: 166 HRSLDDVRM 174
H + DD R+
Sbjct: 158 HDAFDDARV 166
>gi|434376667|ref|YP_006611311.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis HD-789]
gi|401875224|gb|AFQ27391.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis HD-789]
Length = 315
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA +
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAI 171
>gi|343083046|ref|YP_004772341.1| exonuclease RNase T and DNA polymerase III [Cyclobacterium marinum
DSM 745]
gi|342351580|gb|AEL24110.1| Exonuclease RNase T and DNA polymerase III [Cyclobacterium marinum
DSM 745]
Length = 267
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
I FFDLE T + R ++E + + P EL++ I P + +++S G
Sbjct: 9 IAFFDLEATGINISTDR--IVEISILKIFPDSSQELKTLK--INPT--VPIPIETSLIHG 62
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
I + VE AP F++VA ++F G AG N+ ++D + E F +G
Sbjct: 63 IYDKDVEDAPTFKDVAKELFRFFEGADLAGFNVLKYDIPLLVEEFLRVG 111
>gi|73537451|ref|YP_297818.1| DNA polymerase III subunit epsilon [Ralstonia eutropha JMP134]
gi|72120788|gb|AAZ62974.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134]
Length = 530
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
IVF DLETT R + E G + V P + E + TL+ P ++ R G
Sbjct: 32 IVFVDLETTGADAQHDR--ITEIGVVEVGPEGIQE---WDTLLDPG--VSIPPFIQRLTG 84
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
IT E V+ P F +A+ + L GR++ HN RFD +K F G
Sbjct: 85 ITDETVQGQPTFASIAEALAERLQGRLFVAHNA-RFDYGFLKNEFRRAG 132
>gi|228909419|ref|ZP_04073244.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 200]
gi|228850196|gb|EEM95025.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 200]
Length = 318
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 12 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPDRITSLT 65
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 66 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 123
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA +
Sbjct: 124 DTV-FLAKKYMKHAPNHKLETLKRILGIRLSSHNAFDDCITCAAVYQKCAAI 174
>gi|423656466|ref|ZP_17631765.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD200]
gi|401290988|gb|EJR96672.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD200]
Length = 315
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPGP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA +
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAI 171
>gi|257869632|ref|ZP_05649285.1| DNA polymerase III [Enterococcus gallinarum EG2]
gi|257803796|gb|EEV32618.1| DNA polymerase III [Enterococcus gallinarum EG2]
Length = 920
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 82/169 (48%), Gaps = 10/169 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT A R +++FG +++ +++ F+T I P ++ + IT +
Sbjct: 9 DLETTGTDPAIDR--IIQFGCVLIQDGQVIN--RFATDINPD--RRISKQIQNLTHITNQ 62
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP FE+VA I+++L V+ HNI FD + + G P+ + + ID++
Sbjct: 63 QVKRAPYFEDVAHTIYNLLTQTVFVAHNI-YFDYHFLSQELIRCGMPS-LEIPGIDTVE- 119
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVL 186
L + F + ++ LA G + H++ D + +L + +++
Sbjct: 120 LAQVFLPTESSFRLGDLAESIGFVHENPHQADSDAEVTAALLLYIESIM 168
>gi|228966505|ref|ZP_04127558.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
sotto str. T04001]
gi|402559080|ref|YP_006601804.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis HD-771]
gi|423359409|ref|ZP_17336912.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD022]
gi|423561995|ref|ZP_17538271.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
MSX-A1]
gi|228793227|gb|EEM40777.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
sotto str. T04001]
gi|401083520|gb|EJP91777.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD022]
gi|401200882|gb|EJR07760.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
MSX-A1]
gi|401787732|gb|AFQ13771.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis HD-771]
Length = 315
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA +
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAI 171
>gi|225012673|ref|ZP_03703108.1| Exonuclease RNase T and DNA polymerase III [Flavobacteria bacterium
MS024-2A]
gi|225003206|gb|EEG41181.1| Exonuclease RNase T and DNA polymerase III [Flavobacteria bacterium
MS024-2A]
Length = 257
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 12 TAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
T + FFDLETT + R ++E + + P L E + + T P+ + ++S
Sbjct: 6 TKPLCFFDLETTGTDISKDR--IVEIAVLKLHPDGLQEKKEWRT--NPE--QPIPAEASA 59
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFD 111
GIT E V S P F+E++++I+S + G AG+N RFD
Sbjct: 60 VHGITDEMVASEPTFKELSNEIYSFIKGCDLAGYNSDRFD 99
>gi|229080815|ref|ZP_04213333.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-2]
gi|229191695|ref|ZP_04318674.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 10876]
gi|228591857|gb|EEK49697.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 10876]
gi|228702549|gb|EEL55017.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-2]
Length = 318
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 12 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPDRITSLT 65
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 66 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 123
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA +
Sbjct: 124 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAI 174
>gi|365884331|ref|ZP_09423385.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 375]
gi|365287077|emb|CCD95916.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 375]
Length = 719
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 12/126 (9%)
Query: 4 FIPSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLS 63
F P Q + + D+ETT AG R + E GA+ + ++V+ + +L+ P+
Sbjct: 539 FDPGQ-----DYIVVDIETTGSWAAGDR--ITEIGAVKIRNHQVVD--EWHSLLNPQ--R 587
Query: 64 AVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
A+ + +R GIT E V AP F VAD + ++ HN+ FD I F+ +
Sbjct: 588 AIPAQITRLTGITNEMVRHAPVFASVADSFLEFMADGIFVAHNV-NFDYGFITYEFSRLD 646
Query: 124 KPAPVP 129
+ P
Sbjct: 647 RKFRYP 652
>gi|75760700|ref|ZP_00740725.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228902109|ref|ZP_04066273.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222]
gi|74491818|gb|EAO55009.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228857535|gb|EEN02031.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222]
Length = 318
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 12 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPDRITSLT 65
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 66 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 123
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA +
Sbjct: 124 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAI 174
>gi|76789273|ref|YP_328359.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis A/HAR-13]
gi|255311354|ref|ZP_05353924.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276]
gi|255317655|ref|ZP_05358901.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276s]
gi|255348913|ref|ZP_05380920.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70]
gi|255503453|ref|ZP_05381843.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70s]
gi|255507132|ref|ZP_05382771.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis D(s)2923]
gi|385240064|ref|YP_005807906.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9768]
gi|385240989|ref|YP_005808830.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11222]
gi|385241918|ref|YP_005809758.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/11023]
gi|385242842|ref|YP_005810681.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9301]
gi|385245525|ref|YP_005814348.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/150]
gi|385246451|ref|YP_005815273.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11074]
gi|386262893|ref|YP_005816172.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis Sweden2]
gi|389858232|ref|YP_006360474.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis F/SW4]
gi|389859108|ref|YP_006361349.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/SW3]
gi|389859984|ref|YP_006362224.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis F/SW5]
gi|76167803|gb|AAX50811.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis A/HAR-13]
gi|289525581|emb|CBJ15059.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis Sweden2]
gi|296435141|gb|ADH17319.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/150]
gi|296436069|gb|ADH18243.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9768]
gi|296436997|gb|ADH19167.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11222]
gi|296437930|gb|ADH20091.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11074]
gi|296438861|gb|ADH21014.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/11023]
gi|297140430|gb|ADH97188.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9301]
gi|380249304|emb|CCE14597.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis F/SW5]
gi|380250179|emb|CCE13708.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis F/SW4]
gi|380251057|emb|CCE12819.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis E/SW3]
gi|440527245|emb|CCP52729.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
D/SotonD1]
gi|440529918|emb|CCP55402.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
E/SotonE4]
gi|440530817|emb|CCP56301.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
E/SotonE8]
gi|440531708|emb|CCP57218.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
F/SotonF3]
gi|440533495|emb|CCP59005.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
Ia/SotonIa1]
gi|440534389|emb|CCP59899.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
Ia/SotonIa3]
gi|440535285|emb|CCP60795.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/Bour]
Length = 250
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 12/172 (6%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
E V D ETT R V+EF AI ++++ S LI P+ AV+ +S +
Sbjct: 7 VEFVCLDCETTGLDVKKDR--VIEFAAIRFTFDEIID--SVEFLIHPE--RAVSAESQKI 60
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVW-AGHNIRRFDCARIKEAFAEIGKPA-PVPV 130
I+ + P+F EV +I R GH++ FD + + +G+ P
Sbjct: 61 HKISDAMLRDKPKFGEVFSRIKGFFKERDHIVGHHVG-FDLQVLSQESERLGETLLPKHH 119
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLKH 181
+ID+L L +++G N + LA +F + Q HR++ DV MN++V KH
Sbjct: 120 YVIDTLR-LAKEYGDSPNN-SLEALARHFNVPHQGNHRAMKDVEMNVKVFKH 169
>gi|349575260|ref|ZP_08887181.1| DNA polymerase III, epsilon subunit [Neisseria shayeganii 871]
gi|348013268|gb|EGY52191.1| DNA polymerase III, epsilon subunit [Neisseria shayeganii 871]
Length = 457
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 103/259 (39%), Gaps = 33/259 (12%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+ DLE+T G F+ + V E+ +F+TLI P+ ++ R G
Sbjct: 21 VAVVDLEST-----GGHFYEDRVTEVAVLHFYRGEIRTFNTLIHPQ--QTISPFIERLTG 73
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
I + V +AP F ++A ++ +L G + HN RFD ++ FA G P P
Sbjct: 74 IRNDMVAAAPRFADIAAELLPLLRGSLLVAHN-SRFDYTFLRHEFARAGHPFAAPTLCTV 132
Query: 135 SLGVLTEKFGRRAGNMKMATLASYFGL-GQQKHRSLDDVRMNLEVLKHCATVLFLESSLP 193
L+ + R + T+ G+ Q+HR+L DV A FLE SL
Sbjct: 133 Q---LSRQLYPRHHKHNLETIIERHGIRAPQRHRALADV---------LALCDFLELSLQ 180
Query: 194 NTFNSNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQRSAVPYTR--TSLGKMTES 251
T ++ Q ++ R G LP P L Q A+P + +
Sbjct: 181 ETDAAHWQQTVHKLLRP---GLLP-------DWLPAHLSQQIHALPDSHGISIWHHPGHQ 230
Query: 252 VKNLLCKSQGSQPLNTLLK 270
LL Q Q ++ LL+
Sbjct: 231 QPQLLVHEQAFQEIHALLR 249
>gi|229590113|ref|YP_002872232.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens SBW25]
gi|229361979|emb|CAY48879.1| DNA polymerase III, epsilon chain [Pseudomonas fluorescens SBW25]
Length = 248
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 108/265 (40%), Gaps = 36/265 (13%)
Query: 16 VFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK---DLSAVALKSSR 71
V D ETT +P G R ++E G + + R+L F ++P D A+ +
Sbjct: 6 VVLDTETTGMPVTDGHR--IIEIGCVELMGRRLTG-RHFHVYLQPDRDSDEGAIGVH--- 59
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV- 130
GIT E ++ P F EVAD+ F +NG HN FD I FA +G+ +
Sbjct: 60 --GITDEFLKGKPRFAEVADEFFEFINGAQLIIHNA-AFDVGFINNEFALMGQTDRADIS 116
Query: 131 ---GMIDSLGVLTEKF-GRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVL 186
++D+L + E+ G+R + L +G+ R L ++ E+L +
Sbjct: 117 KHCSILDTLMMARERHPGQRN---SLDALCKRYGV-DNSGRELHGALLDSEILADVYLTM 172
Query: 187 FLESSLPNTFNSNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQRSAVPYTRTSLG 246
+ Q+SL++ + S+G +R S L R P R S
Sbjct: 173 -----------TGGQTSLSLAGNA-SDGTGSAEGSGNRPSEIRRLPADRKPTPIIRASEQ 220
Query: 247 KMTESVKNL--LCKSQGSQPLNTLL 269
+ E L + KS G+ L T L
Sbjct: 221 DLAEHAARLEAIAKSAGAPALWTQL 245
>gi|206969177|ref|ZP_03230132.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
AH1134]
gi|229071110|ref|ZP_04204336.1| DNA polymerase III alpha subunit [Bacillus cereus F65185]
gi|423437070|ref|ZP_17414051.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG4X12-1]
gi|423581813|ref|ZP_17557924.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD014]
gi|206736218|gb|EDZ53376.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
AH1134]
gi|228712050|gb|EEL63999.1| DNA polymerase III alpha subunit [Bacillus cereus F65185]
gi|401121401|gb|EJQ29192.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG4X12-1]
gi|401214155|gb|EJR20886.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD014]
Length = 315
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA +
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAI 171
>gi|451940049|ref|YP_007460687.1| DNA polymerase III subunit epsilon [Bartonella australis Aust/NH1]
gi|451899436|gb|AGF73899.1| DNA polymerase III subunit epsilon [Bartonella australis Aust/NH1]
Length = 234
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 84/195 (43%), Gaps = 10/195 (5%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
+ FD+ETT + R ++E G + + L F + P+ + ++ + G+
Sbjct: 4 IIFDIETTGLDKDSDR--IIEIGCVEMVDHYLTG-RRFHVYLNPQGV-MISDEVVAIHGL 59
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
T E ++ +F ++AD++ ++ V HN FD + + I KP +ID+
Sbjct: 60 TNERLKDEKKFNDIADELLEFIDNAVIIAHN-ASFDVSFLNAELERINKPLISINNVIDT 118
Query: 136 LGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSLPNT 195
L + KF G + +L FG+ HRSL ++ E+L + L T
Sbjct: 119 LAMARRKFP--LGPNSLDSLCKRFGV-DNSHRSLHGALLDAEIL--AGVYIELTGGKQGT 173
Query: 196 FNSNLQSSLTVTTRS 210
N + SS+ V S
Sbjct: 174 LNFDDGSSIGVNIPS 188
>gi|423412576|ref|ZP_17389696.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG3O-2]
gi|423431639|ref|ZP_17408643.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG4O-1]
gi|401103404|gb|EJQ11386.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG3O-2]
gi|401117708|gb|EJQ25544.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG4O-1]
Length = 315
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA +
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAI 171
>gi|229111034|ref|ZP_04240593.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-15]
gi|228672397|gb|EEL27682.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-15]
Length = 318
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 12 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPDRITSLT 65
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 66 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 123
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA +
Sbjct: 124 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAI 174
>gi|166154751|ref|YP_001654869.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 434/Bu]
gi|166155626|ref|YP_001653881.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|301336025|ref|ZP_07224269.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2tet1]
gi|339626221|ref|YP_004717700.1| exonuclease, DNA polymerase III subunit epsilon family
domain-containing protein [Chlamydia trachomatis L2c]
gi|165930739|emb|CAP04236.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis 434/Bu]
gi|165931614|emb|CAP07190.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|339460834|gb|AEJ77337.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia trachomatis L2c]
gi|440526347|emb|CCP51831.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
L2b/8200/07]
gi|440536172|emb|CCP61685.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2b/795]
gi|440537065|emb|CCP62579.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
L1/440/LN]
gi|440537954|emb|CCP63468.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
L1/1322/p2]
gi|440538844|emb|CCP64358.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L1/115]
gi|440539733|emb|CCP65247.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L1/224]
gi|440540625|emb|CCP66139.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
L2/25667R]
gi|440541513|emb|CCP67027.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
L3/404/LN]
gi|440542400|emb|CCP67914.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
L2b/UCH-2]
gi|440543291|emb|CCP68805.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
L2b/Canada2]
gi|440544182|emb|CCP69696.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2b/LST]
gi|440545072|emb|CCP70586.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2b/Ams1]
gi|440545962|emb|CCP71476.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
L2b/CV204]
gi|440914224|emb|CCP90641.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2b/Ams2]
gi|440915114|emb|CCP91531.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2b/Ams3]
gi|440916005|emb|CCP92422.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
L2b/Canada1]
gi|440916900|emb|CCP93317.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2b/Ams4]
gi|440917790|emb|CCP94207.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2b/Ams5]
Length = 250
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 12/172 (6%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
E V D ETT R V+EF AI ++++ S LI P+ AV+ +S +
Sbjct: 7 VEFVCLDCETTGLDVKKDR--VIEFAAIRFTFDEIID--SVEFLIHPE--RAVSAESQKI 60
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVW-AGHNIRRFDCARIKEAFAEIGKPA-PVPV 130
I+ + P+F EV +I R GH++ FD + + +G+ P
Sbjct: 61 HKISDAMLRDKPKFGEVFSRIKGFFKERDHIVGHHVG-FDLQVLSQESERLGETLLPKHH 119
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLKH 181
+ID+L L +++G N + LA +F + Q HR++ DV MN++V KH
Sbjct: 120 YVIDTLR-LAKEYGDSPNN-SLEALARHFNVPHQGNHRAMKDVEMNVKVFKH 169
>gi|237802965|ref|YP_002888159.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
B/Jali20/OT]
gi|231274199|emb|CAX10993.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
B/Jali20/OT]
Length = 250
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 12/173 (6%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
E V D ETT R V+EF AI ++++ S LI P+ AV+ +S +
Sbjct: 7 VEFVCLDCETTGLDVKKDR--VIEFAAIRFTFDEIID--SVEFLIHPE--RAVSAESQKI 60
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVW-AGHNIRRFDCARIKEAFAEIGKPA-PVPV 130
I+ + P+F EV +I R GH++ FD + + +G+ P
Sbjct: 61 HKISDAMLRDKPKFGEVFSRIKGFFKERDHIVGHHVG-FDLQVLSQESERLGETLLPKHH 119
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLKHC 182
+ID+L L +++G N + LA +F + Q HR++ DV MN++V KH
Sbjct: 120 YVIDTLR-LAKEYGDSPNN-SLEALARHFNVPHQGNHRAMKDVEMNVKVFKHL 170
>gi|395649418|ref|ZP_10437268.1| DNA polymerase III subunit epsilon [Pseudomonas extremaustralis
14-3 substr. 14-3b]
Length = 248
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 108/265 (40%), Gaps = 36/265 (13%)
Query: 16 VFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK---DLSAVALKSSR 71
V D ETT +P G R ++E G + + R+L F ++P D A+ +
Sbjct: 6 VVLDTETTGMPVTDGHR--IIEIGCVELMGRRLTG-RHFHVYLQPDRDSDEGAIGVH--- 59
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GIT E ++ P F EVAD+ F +NG HN FD I FA +G+ +
Sbjct: 60 --GITDEFLKGKPRFAEVADEFFEFINGAQLIIHNA-AFDIGFINNEFALMGQTDRADIS 116
Query: 132 ----MIDSLGVLTEKF-GRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVL 186
++D+L + E+ G+R + L +G+ R L ++ E+L +
Sbjct: 117 QHCTILDTLMMARERHPGQRN---SLDALCKRYGV-DNSGRELHGALLDSEILADVYLTM 172
Query: 187 FLESSLPNTFNSNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQRSAVPYTRTSLG 246
+ Q+SL++ + S+G +R S L R P R S
Sbjct: 173 -----------TGGQTSLSLAGNA-SDGAGSAEGSGNRPSEIRRLPADRKPTPIIRASEQ 220
Query: 247 KMTESVKNL--LCKSQGSQPLNTLL 269
+ E L + KS G+ L T L
Sbjct: 221 DLAEHAARLEAIAKSAGAPALWTQL 245
>gi|225018411|ref|ZP_03707603.1| hypothetical protein CLOSTMETH_02358 [Clostridium methylpentosum
DSM 5476]
gi|224948829|gb|EEG30038.1| hypothetical protein CLOSTMETH_02358 [Clostridium methylpentosum
DSM 5476]
Length = 1453
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 79/188 (42%), Gaps = 11/188 (5%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
E V FD ETT +R + E GA+++ ++ E + + P+ + K +
Sbjct: 432 GEFVVFDTETTGLNAQTER--LTEIGAVVLKNGEITE--EYDEFVNPE--KPIPPKITEL 485
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
GIT V AP +E ++ F+ GR+ HN FD + A A G
Sbjct: 486 TGITDSMVADAPTEKEALERFFAFAKGRILIAHNA-NFDMGFLAAAAARHG--LSCDFTY 542
Query: 133 IDSLGVLTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDDVRMNLEVLKHCATVLFLESS 191
ID+L ++ F N K+ T+ + LG HR+ DD ++ V A L E
Sbjct: 543 IDTLPIVRTLFPTLR-NHKLDTVVKHLKLGDFNHHRACDDAKILGLVFAEVAKRLIQEKG 601
Query: 192 LPNTFNSN 199
+ + + N
Sbjct: 602 VADIADIN 609
>gi|218898703|ref|YP_002447114.1| DNA polymerase III subunit epsilon [Bacillus cereus G9842]
gi|218544955|gb|ACK97349.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
G9842]
Length = 315
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA +
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAI 171
>gi|335996617|ref|ZP_08562534.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
ruminis SPM0211]
gi|335351687|gb|EGM53178.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
ruminis SPM0211]
Length = 968
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 17/152 (11%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLE T G +++F + K+V +FSTLI P L + IT +
Sbjct: 44 DLEMTGTNPNGSE-RLIQFSCVFTEGNKIVN--TFSTLINP--LRKIPEDVQNLTNITDK 98
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V++AP F+EVA I+++L+ V+ HNI D + F IG P +D G+
Sbjct: 99 DVKNAPTFDEVAGTIYALLSDTVFVAHNI-ELDYRFLNSEFERIGFPK------LDLEGI 151
Query: 139 LTEKFGRRA----GNMKMATLASYFGLGQQKH 166
T + + A + ++ LA + G + KH
Sbjct: 152 DTVQLAQIAFPTLASYRLGDLAHFLGF-KHKH 182
>gi|300813717|ref|ZP_07094037.1| DNA polymerase III, alpha subunit, Gram-positive type
[Peptoniphilus sp. oral taxon 836 str. F0141]
gi|300512174|gb|EFK39354.1| DNA polymerase III, alpha subunit, Gram-positive type
[Peptoniphilus sp. oral taxon 836 str. F0141]
Length = 1415
Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 60/216 (27%), Positives = 92/216 (42%), Gaps = 31/216 (14%)
Query: 16 VFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVE---LESFSTLIKPKDLSAVALKSS 70
V FD+ETT P R + E GA+ K+V+ E FS LI P+ L + K
Sbjct: 402 VVFDIETTGLSPIRDK----ITEIGAV-----KIVDGIITERFSQLINPQML--IPEKVQ 450
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
IT VE+ P EEVA K + + V HN +FD A I+ F E P+
Sbjct: 451 ELTRITNALVENEPTIEEVAPKFYDFIKDSVLVAHNA-KFDTAFIRRVFKENDLDFINPI 509
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDDVRMNLEVLKHCATVLF-- 187
S T K ++ +ATL FG+ HR+++D + +F
Sbjct: 510 LDTLSFARATVKDTKK---FNLATLCKKFGVSLVGAHRAVNDAEATAHLFIKLINKIFDP 566
Query: 188 --LESSLPNTFNSNL------QSSLTVTTRSRSNGK 215
++ + N+ S + +SSL++ T++ K
Sbjct: 567 KHIDFNKLNSLKSQIEPEILFESSLSILTKNEEGLK 602
>gi|282882108|ref|ZP_06290749.1| DNA polymerase III, alpha subunit, Gram-positive type
[Peptoniphilus lacrimalis 315-B]
gi|281298138|gb|EFA90593.1| DNA polymerase III, alpha subunit, Gram-positive type
[Peptoniphilus lacrimalis 315-B]
Length = 1415
Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 60/216 (27%), Positives = 92/216 (42%), Gaps = 31/216 (14%)
Query: 16 VFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVE---LESFSTLIKPKDLSAVALKSS 70
V FD+ETT P R + E GA+ K+V+ E FS LI P+ L + K
Sbjct: 402 VVFDIETTGLSPIRDK----ITEIGAV-----KIVDGIITERFSQLINPQML--IPEKVQ 450
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
IT VE+ P EEVA K + + V HN +FD A I+ F E P+
Sbjct: 451 ELTRITNALVENEPTIEEVAPKFYDFIKDSVLVAHNA-KFDTAFIRRVFKENDLDFINPI 509
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDDVRMNLEVLKHCATVLF-- 187
S T K ++ +ATL FG+ HR+++D + +F
Sbjct: 510 LDTLSFARATVKDTKK---FNLATLCKKFGVSLVGAHRAVNDAEATAHLFIKLINKIFDP 566
Query: 188 --LESSLPNTFNSNL------QSSLTVTTRSRSNGK 215
++ + N+ S + +SSL++ T++ K
Sbjct: 567 KHIDFNKLNSLKSQIEPEILFESSLSILTKNEEGLK 602
>gi|228953879|ref|ZP_04115918.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|423425678|ref|ZP_17402709.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG3X2-2]
gi|423503715|ref|ZP_17480307.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HD73]
gi|449090544|ref|YP_007422985.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|228805847|gb|EEM52427.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|401112169|gb|EJQ20050.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG3X2-2]
gi|402458534|gb|EJV90280.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HD73]
gi|449024301|gb|AGE79464.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 315
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA +
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAI 171
>gi|229047293|ref|ZP_04192892.1| DNA polymerase III alpha subunit [Bacillus cereus AH676]
gi|228724035|gb|EEL75381.1| DNA polymerase III alpha subunit [Bacillus cereus AH676]
Length = 318
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 12 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPDRITSLT 65
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 66 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 123
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA +
Sbjct: 124 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAI 174
>gi|406026994|ref|YP_006725826.1| DNA-directed DNA polymerase III subunit epsilon [Lactobacillus
buchneri CD034]
gi|405125483|gb|AFS00244.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
buchneri CD034]
Length = 945
Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 10/153 (6%)
Query: 19 DLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITR 77
D+ETT A R ++F +V K+++ +F T I P+ V + + GIT
Sbjct: 11 DIETTGTDISADNR--TIQFSCCLVSNNKIIK--TFVTDINPQ--REVPNRIVQLTGITN 64
Query: 78 EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLG 137
E ++ A F++VA +++S+LN V+ HN+ FD + F +G P + + ID++
Sbjct: 65 ERLQKAKTFDQVAAQLYSLLNNTVFVAHNV-NFDFPFLNSEFQRVGYPE-LQIEAIDTV- 121
Query: 138 VLTEKFGRRAGNMKMATLASYFGLGQQKHRSLD 170
L++ + ++ L+SYF + + D
Sbjct: 122 TLSQILLPTLSSYRLQDLSSYFNIEHDHPHTAD 154
>gi|419626277|ref|ZP_14159271.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 23223]
gi|380603563|gb|EIB23654.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 23223]
Length = 253
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+E+T G+ +LE GA + K E+ F + +K K++ + GIT E
Sbjct: 76 DIESTGGVSKGE---ILEIGAAKIQNSK--EIGRFQSFVKVKEIPE---NITELTGITYE 127
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
VE+AP +V L ++ HN+ RFD + I +A E G G++ + V
Sbjct: 128 MVENAPSLAKVLSDFRLFLKDSIFVAHNV-RFDYSFISKALNECG------FGILLNRRV 180
Query: 139 LTEKFGR---RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
T +F + + K+ L + G+ HR+LDD E+ K+C
Sbjct: 181 CTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEIFKYC 227
>gi|410625132|ref|ZP_11335920.1| DNA polymerase III subunit epsilon [Glaciecola mesophila KMM 241]
gi|410155263|dbj|GAC22689.1| DNA polymerase III subunit epsilon [Glaciecola mesophila KMM 241]
Length = 763
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V D+ETT + G R + E GA+ V ++V+ S+S+LI P+ V +R GI
Sbjct: 599 VVVDVETTGGCKPGHR--ITEIGAVKVINGRVVD--SWSSLINPE--RRVPHFITRLTGI 652
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
+ + VE AP F EV D + + + ++ HN+ FD K + + + +P
Sbjct: 653 SNDMVEDAPLFCEVIDDLEAFMQDCIFVAHNV-NFDYGFFKLEYGRLERAFSMP-----K 706
Query: 136 LGVLTE--KFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
L + E K+ + + + L +GL HR+L D + E+L
Sbjct: 707 LCTVREMRKYYPGSKSYSLGKLTKEYGLSLDNHHRALCDAQAAAELL 753
>gi|423585980|ref|ZP_17562067.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD045]
gi|423649484|ref|ZP_17625054.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD169]
gi|401232393|gb|EJR38894.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD045]
gi|401283513|gb|EJR89401.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD169]
Length = 315
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA +
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAI 171
>gi|336066143|ref|YP_004561001.1| DNA polymerase III subunit alpha [Erysipelothrix rhusiopathiae str.
Fujisawa]
gi|334296089|dbj|BAK31960.1| DNA polymerase III, alpha subunit, Gram-positive type
[Erysipelothrix rhusiopathiae str. Fujisawa]
Length = 1433
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 103/230 (44%), Gaps = 30/230 (13%)
Query: 5 IPSQAAG----TAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK 60
I S A G T V FDLETT + ++EFG +++ ++V+ T IK
Sbjct: 371 IVSNAHGESLQTGSYVSFDLETT--GLSNYYDHIIEFGGVLIENGRVVK--KMQTFIK-- 424
Query: 61 DLSAVALKS--SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEA 118
+ V ++ IT + +AP EE D+I L V HN +FD I+E
Sbjct: 425 --APVPVRPFIQELTNITDADLVNAPSIEEAMDEILEFLGDHVLVAHN-AQFDIDFIQET 481
Query: 119 FAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK---HRSLDDVR-- 173
IGK P+ +ID+L + F R + ++ ++A + +G + HR+ D
Sbjct: 482 LRRIGK-EPIQNAVIDTLDLSRALFDNRR-SYRLGSIARFMRIGYDEGVAHRADYDAEVL 539
Query: 174 -------MNLEVLKHCATVLFLES-SLPNTFNSNLQSSLTVTTRSRSNGK 215
+ LE L T+ L+S + ++F +S TV +++S+ K
Sbjct: 540 SLVFLEMLRLEQLSTMQTIDDLQSLNNESSFKKLRKSHCTVIAKTQSSIK 589
>gi|393201415|ref|YP_006463257.1| Rad3-related DNA helicase [Solibacillus silvestris StLB046]
gi|327440746|dbj|BAK17111.1| Rad3-related DNA helicase [Solibacillus silvestris StLB046]
Length = 926
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 79/166 (47%), Gaps = 11/166 (6%)
Query: 19 DLETTVPRRA-GQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITR 77
D+ETT A G R +++ +I+ ++V+ +ST I P + L IT
Sbjct: 11 DIETTGHSPASGDR--MIQIAIVIMQGWEIVK--KYSTFINPG--KPIPLFIQDLTNITD 64
Query: 78 EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLG 137
E V+ A FE AD I+ +L G V+ HN FD ++ F G + ID++
Sbjct: 65 EDVKDALPFEAYADYIYELLEGAVFVAHN-TDFDLNFLQAEFNRAGL-SKWHGKKIDTVE 122
Query: 138 VLTEKFGRRAGNMKMATLASYFG-LGQQKHRSLDDVRMNLEVLKHC 182
LT+ + + K++ LA+ F L Q HR+ DD +LKHC
Sbjct: 123 -LTKILFPMSLSYKLSDLANDFNILLQSAHRADDDALATAYLLKHC 167
>gi|15805882|ref|NP_294580.1| DNA polymerase III subunit epsilon [Deinococcus radiodurans R1]
gi|6458571|gb|AAF10431.1|AE001939_8 DNA polymerase III, epsilon subunit, putative [Deinococcus
radiodurans R1]
Length = 197
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 14 EIVFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK----DLSAVAL 67
++V FDLETT P A ++E GA+ + ++ E F TL++P L ++
Sbjct: 22 DVVVFDLETTGFSPASAA----IVEIGAVRIVGGQIDETLKFETLVRPTRPDGSLLSIPW 77
Query: 68 KSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
++ R GI+ E V AP ++V F ++G HN+ FD ++ +G
Sbjct: 78 QAQRVHGISDEMVRRAPAIKDVLPDFFDFVDGSAVVAHNV-SFDGGFMRAGAERLG 132
>gi|406665659|ref|ZP_11073431.1| Rad3-related DNA helicase [Bacillus isronensis B3W22]
gi|405386524|gb|EKB45951.1| Rad3-related DNA helicase [Bacillus isronensis B3W22]
Length = 926
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 79/166 (47%), Gaps = 11/166 (6%)
Query: 19 DLETTVPRRA-GQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITR 77
D+ETT A G R +++ +I+ ++V+ +ST I P + L IT
Sbjct: 11 DIETTGHSPASGDR--MIQIAIVIMQGWEIVK--KYSTFINPG--KPIPLFIQDLTNITD 64
Query: 78 EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLG 137
E V+ A FE AD I+ +L G V+ HN FD ++ F G + ID++
Sbjct: 65 EDVKDALPFEAYADYIYELLEGAVFVAHN-TDFDLNFLQAEFNRAGL-SKWHGKKIDTVE 122
Query: 138 VLTEKFGRRAGNMKMATLASYFG-LGQQKHRSLDDVRMNLEVLKHC 182
LT+ + + K++ LA+ F L Q HR+ DD +LKHC
Sbjct: 123 -LTKILFPMSLSYKLSDLANDFNILLQSAHRADDDALATAYLLKHC 167
>gi|323342031|ref|ZP_08082264.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414]
gi|322464456|gb|EFY09649.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414]
Length = 1433
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 103/230 (44%), Gaps = 30/230 (13%)
Query: 5 IPSQAAG----TAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK 60
I S A G T V FDLETT + ++EFG +++ ++V+ T IK
Sbjct: 371 IVSNAHGESLQTGSYVSFDLETT--GLSNYYDHIIEFGGVLIENGRVVK--KMQTFIK-- 424
Query: 61 DLSAVALKS--SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEA 118
+ V ++ IT + +AP EE D+I L V HN +FD I+E
Sbjct: 425 --APVPVRPFIQELTNITDADLVNAPSIEEAMDEILEFLGDHVLVAHN-AQFDIDFIQET 481
Query: 119 FAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK---HRSLDDVR-- 173
IGK P+ +ID+L + F R + ++ ++A + +G + HR+ D
Sbjct: 482 LRRIGK-EPIQNAVIDTLDLSRALFDNRR-SYRLGSIARFMRIGYDEGVAHRADYDAEVL 539
Query: 174 -------MNLEVLKHCATVLFLES-SLPNTFNSNLQSSLTVTTRSRSNGK 215
+ LE L T+ L+S + ++F +S TV +++S+ K
Sbjct: 540 SLVFLEMLRLEQLSTMQTIDDLQSLNNESSFKKLRKSHCTVIAKTQSSIK 589
>gi|331701432|ref|YP_004398391.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
buchneri NRRL B-30929]
gi|329128775|gb|AEB73328.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
buchneri NRRL B-30929]
Length = 945
Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 10/153 (6%)
Query: 19 DLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITR 77
D+ETT A R ++F +V K+++ +F T I P+ V + + GIT
Sbjct: 11 DIETTGTDISADNR--TIQFSCCLVSNNKIIK--TFVTDINPQ--REVPNRIVQLTGITN 64
Query: 78 EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLG 137
E ++ A F++VA +++S+LN V+ HN+ FD + F +G P + + ID++
Sbjct: 65 ERLQKAKTFDQVAAQLYSLLNNTVFVAHNV-NFDFPFLNSEFQRVGYPE-LQIEAIDTV- 121
Query: 138 VLTEKFGRRAGNMKMATLASYFGLGQQKHRSLD 170
L++ + ++ L+SYF + + D
Sbjct: 122 TLSQILLPTLSSYRLQDLSSYFNIEHDHPHTAD 154
>gi|295100646|emb|CBK98191.1| DNA polymerase III catalytic subunit, PolC type [Faecalibacterium
prausnitzii L2-6]
Length = 1417
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 16/164 (9%)
Query: 12 TAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
E FD ETT + ++ E GA+IV ++VE F T +KP + K +
Sbjct: 394 NGEFCVFDTETTGLDPGVE--YLTEIGAVIVRNGEVVE--EFDTFVKPG--KPITSKITE 447
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG---KPAPV 128
GIT E V AP E ++GR+ GHN FD ++ A G +P
Sbjct: 448 LTGITNEMVADAPSEAEALKAFLDFVDGRILVGHNAHSFDIRFLRAAAKRSGIEFEPT-- 505
Query: 129 PVGMIDSLGVLTEKFGRRAGNMKMATLASYFGL-GQQKHRSLDD 171
ID+L + + N K T+ + L + HR+ +D
Sbjct: 506 ---YIDTL-TMAQAMYPGLHNYKQGTINKHLELPAYEAHRACED 545
>gi|407275231|ref|ZP_11103701.1| DNA polymerase III [Rhodococcus sp. P14]
Length = 613
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 81/172 (47%), Gaps = 13/172 (7%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK-DLSAVALKSSRCDG 74
V D+ET+ R R VL A+++ VE E +STL+ P D V +
Sbjct: 23 VVVDVETSGLRAYAHR--VLSVAALVLREDGSVEQE-YSTLVDPGCDPGPVHVHR----- 74
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
+TRE + AP FE+++ ++ +L G HN FD + F G A +PV
Sbjct: 75 LTRERLAGAPRFEQISGELAEVLAGGTIVAHNA-AFDYGFLDAEFRRAG--AEIPVKHRL 131
Query: 135 SLGVLTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDDVRMNLEVLKHCATV 185
L+ + + K++TLA+++ + Q +H + DD R+ EV A++
Sbjct: 132 CTLALSRRLELDVADHKLSTLAAHWQVQQLLEHDAYDDARVLSEVFVRSASL 183
>gi|423641294|ref|ZP_17616912.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD166]
gi|401278558|gb|EJR84489.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD166]
Length = 315
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA +
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAI 171
>gi|323342398|ref|ZP_08082630.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414]
gi|336066800|ref|YP_004561658.1| DNA polymerase III subunit epsilon [Erysipelothrix rhusiopathiae
str. Fujisawa]
gi|322463510|gb|EFY08704.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414]
gi|334296746|dbj|BAK32617.1| DNA polymerase III, epsilon subunit [Erysipelothrix rhusiopathiae
str. Fujisawa]
Length = 200
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 12/162 (7%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R+ + + E AI R ++++FSTL+KP +++ GIT E
Sbjct: 19 DLETT--GRSNKFEDITELSAIKY--RNYKQVDAFSTLVKPD--NSILPFVVELTGITEE 72
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAF-AEIGKPAPVPVGMIDSLG 137
V AP+ ++V + + V GHN+ FD + +A+ A +G + +D+L
Sbjct: 73 MVSDAPKIDQVIKQFVDFIGTDVILGHNV-MFDYGLVYDAYLATVG--LRMHNDYVDTLR 129
Query: 138 VLTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDDVRMNLEV 178
V + + + N K+ TL +YF + + HR +D EV
Sbjct: 130 V-SRLLNKDSKNHKLETLCAYFDVERLVGHRGSEDCLQTAEV 170
>gi|74316845|ref|YP_314585.1| DNA polymerase III subunit epsilon [Thiobacillus denitrificans ATCC
25259]
gi|74056340|gb|AAZ96780.1| DNA polymerase III, epsilon subunit [Thiobacillus denitrificans
ATCC 25259]
Length = 470
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 8/110 (7%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+ F DLETT A R V E I V +E++STL+ P+ A+ + G
Sbjct: 10 LAFVDLETTGANAARDR--VTE---IGVVVVDGDRVETWSTLVNPE--RAIPQFIQQLTG 62
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGK 124
I+ E V AP F VAD++ L+GR++ HN RFD +K + +G+
Sbjct: 63 ISNEMVADAPTFARVADELAERLDGRLFIAHNA-RFDYGFLKHEYQRLGR 111
>gi|392549853|ref|ZP_10296990.1| DNA polymerase III subunit epsilon [Pseudoalteromonas spongiae
UST010723-006]
Length = 740
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 21/170 (12%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V D+ETT ++ R + E G + V K+ + S+ TL+ P+ + + GI
Sbjct: 576 VVVDIETTGGKKDTHR--ITEIGLVRVEQGKITD--SWQTLVNPE--RHIPKMITELTGI 629
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAP-VPVGMID 134
+ E V+ AP+FE++A+K+ + ++ HN+ FD I++ FA + K + +
Sbjct: 630 SNEMVKDAPKFEQIAEKLDTFSRNAIFVAHNV-NFDYGFIRQEFARLNKKYTRAKICTVQ 688
Query: 135 SL-----GVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
G + G+ ++ + + HR+LDD + E+L
Sbjct: 689 QARKYLPGFKSYSLGKLCCDLNIEL--------KNHHRALDDAKAAAEIL 730
>gi|403716809|ref|ZP_10942247.1| DNA polymerase III subunit epsilon [Kineosphaera limosa NBRC
100340]
gi|403209605|dbj|GAB96930.1| DNA polymerase III subunit epsilon [Kineosphaera limosa NBRC
100340]
Length = 598
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 72/169 (42%), Gaps = 14/169 (8%)
Query: 16 VFFDLETTVPRRAGQRF--WVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
V DLETT G + E GA+ V R L F TL+ P + + S
Sbjct: 55 VVVDLETT----GGSSIECAITEIGAVKV--RGGEVLGQFQTLVNPGE--PIPAVISVLT 106
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP V + V HN FD ++ A +G P ++
Sbjct: 107 GITDSMVAGAPRIATVLPSFLEFVGNSVLVAHNA-PFDVGFLRAAADRLGIDWP-GYQVL 164
Query: 134 DSLGVLTEKFGR-RAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLK 180
D++ + + GR A N K+A+LA FG Q HR+L D R ++VL
Sbjct: 165 DTVKLARQLVGRDEAPNHKLASLARLFGATQTPDHRALHDARATVDVLH 213
>gi|332638894|ref|ZP_08417757.1| helicase [Weissella cibaria KACC 11862]
Length = 940
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R + +++ V +K++ FSTL+ P + + + GIT+
Sbjct: 11 DLETT--RTTSETGRIIQIAVAFVQNKKIIN--QFSTLVNPGE--QIPRNIIQLTGITQN 64
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
V+ AP FE+VA + ++L G ++ HN+ FD + F +G
Sbjct: 65 MVKGAPFFEDVAMTLHAMLQGTIFVAHNV-NFDLPFLNAEFERVG 108
>gi|365159610|ref|ZP_09355788.1| exonuclease, DNA polymerase III, epsilon subunit, partial [Bacillus
sp. 7_6_55CFAA_CT2]
gi|363625073|gb|EHL76127.1| exonuclease, DNA polymerase III, epsilon subunit, partial [Bacillus
sp. 7_6_55CFAA_CT2]
Length = 317
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA +
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAI 171
>gi|228922317|ref|ZP_04085624.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228837372|gb|EEM82706.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 318
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 12 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPDRITSLT 65
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 66 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 123
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA +
Sbjct: 124 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAI 174
>gi|339448370|ref|ZP_08651926.1| ATP-dependent helicase DinG [Lactobacillus fructivorans KCTC 3543]
Length = 937
Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 80/168 (47%), Gaps = 21/168 (12%)
Query: 19 DLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIK-----PKDLSAVALKSSRC 72
D+ETT +G + +++F V ++++ S+ST + PKD++ +
Sbjct: 11 DMETTGTDVSSGDK--IIQFSCTFVQGGQVID--SYSTYVNNGEAIPKDITHLT------ 60
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
GI + ++ AP F++VA I+ IL+G V+ HN+ FD + +G P + +
Sbjct: 61 -GINSQTIKGAPSFDQVAAHIYKILSGTVFVAHNV-NFDFPFLNAELERVGYPE-LNIKA 117
Query: 133 IDSLGVLTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDDVRMNLEVL 179
ID++ L++ F ++ L+ +FG+ H S D +L
Sbjct: 118 IDTV-TLSQIFFPELNGYRLKDLSHHFGISHTHPHSSKSDADATAHLL 164
>gi|350562772|ref|ZP_08931595.1| DNA polymerase III, epsilon subunit [Thioalkalimicrobium aerophilum
AL3]
gi|349779638|gb|EGZ33979.1| DNA polymerase III, epsilon subunit [Thioalkalimicrobium aerophilum
AL3]
Length = 490
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 50 LESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
++S+ LI+P+ + +R GIT V AP F+E+AD++ ++L +V+ HN R
Sbjct: 51 VQSWQQLIRPQ--RTIPPWITRLTGITNAMVADAPRFDEIADELAALLADKVFVAHNA-R 107
Query: 110 FDCARIKEAFAEIG 123
FD IK F ++G
Sbjct: 108 FDYGFIKHQFKQLG 121
>gi|322515310|ref|ZP_08068307.1| DNA-directed DNA polymerase III epsilon subunit [Actinobacillus
ureae ATCC 25976]
gi|322118686|gb|EFX90898.1| DNA-directed DNA polymerase III epsilon subunit [Actinobacillus
ureae ATCC 25976]
Length = 257
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 17/172 (9%)
Query: 16 VFFDLETTV-----PRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
V D ETT P + G ++E GA+ V R+L +F IKP V ++
Sbjct: 10 VVLDTETTGMSFSGPPQIGHN--IIEIGAVEVINRRLTG-RTFHVYIKPP--REVEEEAI 64
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
+ GIT E ++ P F EVAD+ + G HN FD A + + F+ + P P
Sbjct: 65 KVHGITNEFLQDKPVFAEVADEFIEFIKGAELIIHN-APFDVAFMDQEFSYLENPPPKTA 123
Query: 131 ---GMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
+ DSL V + + + N+ L G+ K R L ++ E+L
Sbjct: 124 EICSVTDSLAVARKMYPGKRNNLD--ALCDRLGIDNSK-RVLHGALLDAEIL 172
>gi|394993575|ref|ZP_10386320.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus sp. 916]
gi|393805687|gb|EJD67061.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus sp. 916]
Length = 928
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 10/115 (8%)
Query: 15 IVFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
V D+ETT P++ + +++ A+++ ++ E FS I P A+ +
Sbjct: 6 FVVIDVETTGNSPKKGDK---IIQIAAVVIENGQITE--RFSKYINPN--QAIPPFIEQL 58
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAP 127
GI+ VE+ FEEVA++IF +L+G + HNI FD ++ +E G P
Sbjct: 59 TGISSGMVENELPFEEVAEEIFHLLDGAYFVAHNI-HFDLGFVRHELSEAGYELP 112
>gi|359299710|ref|ZP_09185549.1| DNA polymerase III subunit epsilon [Haemophilus [parainfluenzae]
CCUG 13788]
gi|402306852|ref|ZP_10825887.1| DNA polymerase III, epsilon subunit [Haemophilus sputorum HK 2154]
gi|400373875|gb|EJP26800.1| DNA polymerase III, epsilon subunit [Haemophilus sputorum HK 2154]
Length = 250
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 74/170 (43%), Gaps = 13/170 (7%)
Query: 16 VFFDLETTVPRRAGQ---RFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
V D ETT GQ ++E GA+ V R+L +F IKP V ++ R
Sbjct: 10 VVLDTETTGMNMTGQPQIGHNIIEIGAVEVINRRLTG-RTFHVYIKPP--REVDEEAIRV 66
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
GIT E ++ P F E+AD + + G HN FD A + + F+ + P P +
Sbjct: 67 HGITNEFLQDKPVFAEIADDFLAFIKGAELIIHN-APFDVAFMDQEFSYLKDPPPKTAEI 125
Query: 133 ---IDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
DSL + + + + N+ L G+ K R L ++ E+L
Sbjct: 126 CTVTDSLQMARKMYPGKRNNLD--ALCDRLGIDNSK-RVLHGALLDAEIL 172
>gi|307252915|ref|ZP_07534803.1| hypothetical protein appser6_14260 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306859553|gb|EFM91578.1| hypothetical protein appser6_14260 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 239
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 10/149 (6%)
Query: 34 VLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKI 93
++E GA+ V R+L +F IKP V ++ + GIT E ++ P F EVAD+
Sbjct: 13 IIEIGAVEVINRRLTG-RTFHVYIKPP--REVEEEAIKVHGITNEFLQDKPVFAEVADEF 69
Query: 94 FSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM---IDSLGVLTEKFGRRAGNM 150
+ G HN FD A + + F+ + P P M DSL V + + + N+
Sbjct: 70 IEFIKGAELIIHN-APFDVAFMDQEFSYLENPPPKTAEMCSVTDSLAVARKMYPGKRNNL 128
Query: 151 KMATLASYFGLGQQKHRSLDDVRMNLEVL 179
L G+ K R L ++ E+L
Sbjct: 129 D--ALCDRLGIDNSK-RVLHGALLDAEIL 154
>gi|358464598|ref|ZP_09174560.1| DnaQ family exonuclease/DinG family helicase [Streptococcus sp.
oral taxon 058 str. F0407]
gi|357066702|gb|EHI76840.1| DnaQ family exonuclease/DinG family helicase [Streptococcus sp.
oral taxon 058 str. F0407]
Length = 830
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 90/199 (45%), Gaps = 20/199 (10%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V DLE T G + +++ G +++ ++++ ++T + P + +K G+
Sbjct: 10 VVVDLEAT---STGSKAKIIQVGIVVIENGEIID--QYATDVNPHEPLDSHIKE--LTGL 62
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVP-VGMID 134
T + + +APEF +VA KIF ++ V+ HN+ +FD + E G P V ++
Sbjct: 63 TDQRLAAAPEFSQVAGKIFELVKDGVFVAHNV-QFDANLLAEFLFFEGYELRTPRVDTVE 121
Query: 135 SLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHCATVLF------ 187
VL +F + + L G+ +Q H +L D + E+L + LF
Sbjct: 122 LAQVLYPQFEK----YNLGILCQELGIELEQAHTALSDAQATAELLLYMRQKLFELPKGL 177
Query: 188 LESSLPNTFNSNLQSSLTV 206
LES L N +S L +
Sbjct: 178 LESLLDLADNLLYESYLVI 196
>gi|160944143|ref|ZP_02091373.1| hypothetical protein FAEPRAM212_01645 [Faecalibacterium prausnitzii
M21/2]
gi|158444819|gb|EDP21823.1| DNA polymerase III, alpha subunit, Gram-positive type
[Faecalibacterium prausnitzii M21/2]
Length = 1417
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 12/161 (7%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
E FD ETT + ++ E GA+I+ ++VE F T +KP + K +
Sbjct: 395 GEFCVFDTETTGLDPGVE--YLTEIGAVIIRNGEVVE--EFDTFVKPG--KPITPKITEL 448
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG-KPAPVPVG 131
GIT E V AP +E + + R+ GHN+ FD ++ A G K P
Sbjct: 449 TGITNEMVADAPSEKEALEAFLAFAGDRILVGHNVHAFDMRFLRAAAKRSGIKLEPT--- 505
Query: 132 MIDSLGVLTEKFGRRAGNMKMATLASYFGL-GQQKHRSLDD 171
ID+L + + N K T+ + L + HR+ +D
Sbjct: 506 YIDTL-TMAQTMYPGLHNYKQGTINKHLELPAYEAHRACED 545
>gi|423558865|ref|ZP_17535167.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
MC67]
gi|401190634|gb|EJQ97675.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
MC67]
Length = 318
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ ++ + +
Sbjct: 12 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RSIPDRITSLT 65
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 66 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 123
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +++ + A N K+ TL G+ H + DD V + CA++
Sbjct: 124 DTV-FLAKRYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQRCASI 174
>gi|307250533|ref|ZP_07532477.1| hypothetical protein appser4_13130 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306857426|gb|EFM89538.1| hypothetical protein appser4_13130 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
Length = 248
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 17/172 (9%)
Query: 16 VFFDLETTV-----PRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
+ D ETT P + G ++E GA+ V R+L +F IKP V ++
Sbjct: 1 MVLDTETTGMSFSGPPQIGHN--IIEIGAVEVINRRLTG-RTFHVYIKPP--REVEEEAI 55
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
+ GIT E ++ P F EVAD+ + G HN FD A + + F+ + P P
Sbjct: 56 KVHGITNEFLQDKPVFAEVADEFIEFIKGAELIIHN-APFDVAFMDQEFSYLENPPPKTA 114
Query: 131 GM---IDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
M DSL V + + + N+ L G+ K R L ++ E+L
Sbjct: 115 EMCSVTDSLAVARKMYPGKRNNLD--ALCDRLGIDNSK-RVLHGALLDAEIL 163
>gi|315127113|ref|YP_004069116.1| hypothetical protein PSM_A2044 [Pseudoalteromonas sp. SM9913]
gi|315015627|gb|ADT68965.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
Length = 718
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 15/156 (9%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+ETT + G R + E G + + ++V+ +++TLI P+ + + GI
Sbjct: 558 DIETTGGLKGGNR--ITEIGIVKIKQGEIVD--TWTTLINPE--RPIPRFITSLTGINDA 611
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V +AP F E+A + + L+G ++ HN+ FD IK+ IG +P L
Sbjct: 612 MVSNAPIFSEIAAPLLNQLSGSIFVAHNV-NFDYGFIKKELERIGINFKMP-----KLCT 665
Query: 139 LTE--KFGRRAGNMKMATLASYFGLG-QQKHRSLDD 171
+ E K + + + L+++F L HR+LDD
Sbjct: 666 VVESRKAFKGLKSYSLGNLSAHFNLDLTNHHRALDD 701
>gi|357050827|ref|ZP_09112023.1| DnaQ family exonuclease/DinG family helicase [Enterococcus
saccharolyticus 30_1]
gi|355380452|gb|EHG27588.1| DnaQ family exonuclease/DinG family helicase [Enterococcus
saccharolyticus 30_1]
Length = 920
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 43/169 (25%), Positives = 83/169 (49%), Gaps = 10/169 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT A R +++FG +++ +++ F+T I P ++ + IT +
Sbjct: 9 DLETTGTDPAIDR--IIQFGCVLIQDGQVIN--RFATDINPD--RRISKQIQNLTHITNQ 62
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V+ AP FE+VA I+++L V+ HNI FD + + G P P+ + ID++
Sbjct: 63 QVKRAPYFEDVAHTIYNLLTQTVFVAHNI-YFDYHFLSQELIRCGMP-PLEIPGIDTVE- 119
Query: 139 LTEKFGRRAGNMKMATLASYFG-LGQQKHRSLDDVRMNLEVLKHCATVL 186
L + F + ++ LA G + + H++ D + +L + +++
Sbjct: 120 LAQVFLPTESSFRLGDLAESIGFVHENPHQADSDAEVTAALLLYIESIM 168
>gi|171315543|ref|ZP_02904779.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
gi|171099380|gb|EDT44118.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
Length = 375
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 1 MDGFIPSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK 60
M F PS A +VF DLETT A R + E G + + P + + +++TL+ P
Sbjct: 1 MPDFRPSDPACEQPLVFVDLETTGGSSAEHR--ITEIGVVEIGP---LGVSTWTTLVNPG 55
Query: 61 DLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFA 120
++ + GI+ E V AP F +A +F L+G+++ HN FD ++ F
Sbjct: 56 --QSIPPFIQQLTGISDEMVRDAPSFASLAPTLFERLDGKLFVAHNA-SFDRGFLRAEFD 112
Query: 121 EIG 123
G
Sbjct: 113 RAG 115
>gi|363893413|ref|ZP_09320511.1| DNA polymerase III, alpha subunit, Gram-positive type
[Eubacteriaceae bacterium ACC19a]
gi|361963717|gb|EHL16783.1| DNA polymerase III, alpha subunit, Gram-positive type
[Eubacteriaceae bacterium ACC19a]
Length = 1402
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 11/159 (6%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
E V FD+ETT + + + E GA+ + ++V+ +FS LI PK + K +
Sbjct: 387 EYVVFDIETT--GFSNKNDAITEIGAVKIKNCEIVD--TFSQLINPK--RPIPEKIQKLT 440
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT E V P EEV +G V HN FD I+E E + I
Sbjct: 441 GITDELVVDKPFIEEVLPNFLEFCSGSVLVAHN-SDFDTGFIREKSFE--QKLDYDFDAI 497
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDD 171
D+L VL+ N K+ T+A + + HR++DD
Sbjct: 498 DTL-VLSRLIMTELKNHKLNTIAKELDISLENHHRAVDD 535
>gi|254386412|ref|ZP_05001717.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
gi|194345262|gb|EDX26228.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
Length = 334
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 10/132 (7%)
Query: 51 ESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ + TL+ P +D V + G+T + ++ AP F+++A + L RV HN
Sbjct: 63 DHWYTLVNPQRDPGPVWIH-----GLTSDMLQDAPLFKDIAGEFAGRLADRVLVAHNA-I 116
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRS 168
FD I +A + APV + L+++ N K+ +LA++FG+ QQ+ H +
Sbjct: 117 FDWQMIAREYARAEETAPVRQRLCTI--ALSKELNLPLPNHKLESLAAHFGVVQQRAHHA 174
Query: 169 LDDVRMNLEVLK 180
LDD R+ E +
Sbjct: 175 LDDARVLAEAFR 186
>gi|307248305|ref|ZP_07530330.1| hypothetical protein appser2_12830 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|307263945|ref|ZP_07545548.1| hypothetical protein appser13_13530 [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|306855175|gb|EFM87353.1| hypothetical protein appser2_12830 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|306870707|gb|EFN02448.1| hypothetical protein appser13_13530 [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 239
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 12/150 (8%)
Query: 34 VLEFGAIIVCPRKLVELESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADK 92
++E GA+ V R+L +F IKP +++ A+K GIT E ++ P F EVAD+
Sbjct: 13 IIEIGAVEVINRRLTG-RTFHVYIKPPREVDEEAIK---VHGITNEFLQDKPVFAEVADE 68
Query: 93 IFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM---IDSLGVLTEKFGRRAGN 149
+ G HN FD A + + F+ + P P M DSL V + + + N
Sbjct: 69 FIEFIKGAELIIHN-APFDVAFMDQEFSYLENPPPKTAEMCSVTDSLAVARKMYPGKRNN 127
Query: 150 MKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
+ L G+ K R L ++ E+L
Sbjct: 128 LD--ALCDRLGIDNSK-RVLHGALLDAEIL 154
>gi|433644481|ref|YP_007277049.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Mycobacterium smegmatis JS623]
gi|433301201|gb|AGB27019.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Mycobacterium smegmatis JS623]
Length = 195
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 78/166 (46%), Gaps = 11/166 (6%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+V D+ET+ A R +L A+ + P +VE ++ TL+ P V + G
Sbjct: 7 LVVIDVETSGFDPASAR--ILSVAALTLSPTCVVEHSTY-TLLDP----GVDPGPTHVHG 59
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
+T + P + +VA ++ S++NGR+ HN FD + G A +PV +
Sbjct: 60 LTAAMLAGQPRYADVAARLASLMNGRILVAHN-AAFDYGFLAAESHRCG--ATLPVAEVL 116
Query: 135 SLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVL 179
L ++ +A+LA+Y+ + Q + H +LDD R+ +L
Sbjct: 117 CSLELAGLLDLGLDSLSLASLAAYWNVPQARPHDALDDARVLAAIL 162
>gi|325001618|ref|ZP_08122730.1| hypothetical protein PseP1_22781 [Pseudonocardia sp. P1]
Length = 403
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 6/149 (4%)
Query: 34 VLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKI 93
+ E GA+ V R + STL+ P + V +R GIT + AP V +
Sbjct: 42 ITEVGAVSV--RGGESIGELSTLVDPG--TRVPADVTRLTGITNGMLAGAPPLGAVLPPV 97
Query: 94 FSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMA 153
+L G V HN FD ++ A +P P P + + ++++
Sbjct: 98 LDLLRGSVLVAHNA-PFDTGFLRAACERHERPWPSPPVLCTARLARAVLPRSECPSVRLG 156
Query: 154 TLASYFGL-GQQKHRSLDDVRMNLEVLKH 181
LA++FG HR+L D R +EVL H
Sbjct: 157 ALAAHFGCRTTPDHRALTDARATVEVLHH 185
>gi|206976138|ref|ZP_03237047.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
H3081.97]
gi|217961012|ref|YP_002339580.1| DNA polymerase III subunit epsilon [Bacillus cereus AH187]
gi|222097065|ref|YP_002531122.1| DNA polymerase iii subunit epsilon [Bacillus cereus Q1]
gi|229140223|ref|ZP_04268781.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST26]
gi|375285515|ref|YP_005105954.1| DNA polymerase III subunit epsilon [Bacillus cereus NC7401]
gi|423353298|ref|ZP_17330925.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
IS075]
gi|423374588|ref|ZP_17351926.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
AND1407]
gi|423567509|ref|ZP_17543756.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
MSX-A12]
gi|206745592|gb|EDZ56990.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
H3081.97]
gi|217066526|gb|ACJ80776.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
AH187]
gi|221241123|gb|ACM13833.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1]
gi|228643309|gb|EEK99582.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST26]
gi|358354042|dbj|BAL19214.1| DNA polymerase III, epsilon subunit, putative [Bacillus cereus
NC7401]
gi|401089938|gb|EJP98102.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
IS075]
gi|401093876|gb|EJQ01962.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
AND1407]
gi|401213568|gb|EJR20307.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
MSX-A12]
Length = 315
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-QNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA +
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAFI 171
>gi|326385547|ref|ZP_08207181.1| transposase [Novosphingobium nitrogenifigens DSM 19370]
gi|326209881|gb|EGD60664.1| transposase [Novosphingobium nitrogenifigens DSM 19370]
Length = 307
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 18/177 (10%)
Query: 6 PSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSA- 64
P +AA + V D+ET R + + + G IV R E+ ++ TL+ P+D A
Sbjct: 24 PDRAAEVPDFVVVDVETACARVSS----ICQIG--IVGFRDGREMFAYETLVDPRDEFAP 77
Query: 65 --VALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEI 122
VA+ GIT + V+ P F+++ + + L GRV H++ FD + + A
Sbjct: 78 FNVAIH-----GITADRVDGEPTFDDIHGIVDAHLRGRVTVAHSL--FDKSALAAACGVS 130
Query: 123 GKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
G+P + +DS+ V + + + ++ LA + G+ + H +L D R VL
Sbjct: 131 GQPV-IETEWLDSVRVAKLAWPQLQSH-RLNVLARFLGIEHRHHDALSDARAAGMVL 185
>gi|307257347|ref|ZP_07539117.1| hypothetical protein appser10_13450 [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306864197|gb|EFM96110.1| hypothetical protein appser10_13450 [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
Length = 248
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 77/173 (44%), Gaps = 19/173 (10%)
Query: 16 VFFDLETTV-----PRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKP-KDLSAVALKS 69
+ D ETT P + G ++E GA+ V R+L +F IKP +++ A+K
Sbjct: 1 MVLDTETTGMSFSGPPQIGHN--IIEIGAVEVINRRLTG-RTFHVYIKPPREVDEEAIK- 56
Query: 70 SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVP 129
GIT E ++ P F EVAD+ + G HN FD A + + F+ + P P
Sbjct: 57 --VHGITNEFLQDKPVFAEVADEFIEFIKGAELIIHN-APFDVAFMDQEFSYLENPPPKT 113
Query: 130 VGM---IDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
M DSL V + + + N+ L G+ K R L ++ E+L
Sbjct: 114 AEMCSVTDSLAVARKMYPGKRNNLD--ALCDRLGIDNSK-RVLHGALLDAEIL 163
>gi|377345165|emb|CCG00859.1| DNA polymerase III [uncultured Flavobacteriia bacterium]
Length = 275
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 12 TAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK-DLSAVALKSS 70
T IVFFDLETT A R ++E + V P ES + L+ P+ D+ V++
Sbjct: 6 TKPIVFFDLETTGVHIATDR--IVEIAVLKVFPNG--NKESKTWLVNPEMDIPQVSID-- 59
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
GIT E V + P F+E+A ++ ++ G AG N RFD + E G
Sbjct: 60 -VHGITNEKVMTEPTFKELAKEVSEMIAGCDLAGFNSNRFDIPLLAEELMRAG 111
>gi|410099905|ref|ZP_11294872.1| exonuclease, DNA polymerase III, epsilon subunit [Parabacteroides
goldsteinii CL02T12C30]
gi|409217246|gb|EKN10224.1| exonuclease, DNA polymerase III, epsilon subunit [Parabacteroides
goldsteinii CL02T12C30]
Length = 257
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 78/181 (43%), Gaps = 22/181 (12%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
IVFFDLETT R ++E + V P + ES + I P+ + +S+ G
Sbjct: 9 IVFFDLETTGINIVKDR--IVEISFVKVHPNG--KEESKTRRINPE--MPIPPESTAIHG 62
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
IT E V+ P F+E+A + + + G AG+N RFD + E F G +
Sbjct: 63 ITDEDVKDCPTFKEIAKSLAAQIEGCDLAGYNSNRFDIPLLAEEFLRAGVDIDLNKRKFV 122
Query: 135 SLGVLTEKFGRR----------------AGNMKMATLASYFGLGQQKHRSLDDVRMNLEV 178
+ + K +R A + T+A+Y L Q R DD++ +++
Sbjct: 123 DVQTIFHKMEQRTLSAAYKFYCDKSLENAHTAEADTMATYEILKAQLDRYPDDLQNDIDF 182
Query: 179 L 179
L
Sbjct: 183 L 183
>gi|326389440|ref|ZP_08211007.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
JW 200]
gi|325994445|gb|EGD52870.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
JW 200]
Length = 1407
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 15/176 (8%)
Query: 7 SQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVA 66
++A E FD+ETT ++E GA+ + K+++ +F T + PK +
Sbjct: 386 TEATLEDEFTVFDIETTGLSNINDE--IIEIGAVKIKEGKIID--TFETFVNPK----IP 437
Query: 67 LKS--SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGK 124
+ S ++ GI V+ AP EE+ K + V HN FD + IK +
Sbjct: 438 ISSFITKLTGIDESMVKDAPSIEEILPKFLEFASNSVLVAHNA-NFDVSFIKSKAKKFN- 495
Query: 125 PAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
V ++D+L L+ + N K+ TLA + + + HR++DD E+
Sbjct: 496 -LNVNNAVLDTLE-LSRHLYKDLKNYKLDTLADHLQVKLEHHHRAVDDAMATAEIF 549
>gi|332876762|ref|ZP_08444520.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|357047364|ref|ZP_09108971.1| exonuclease [Paraprevotella clara YIT 11840]
gi|332685321|gb|EGJ58160.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|355529965|gb|EHG99390.1| exonuclease [Paraprevotella clara YIT 11840]
Length = 256
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 70/166 (42%), Gaps = 10/166 (6%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+VFFDLETT R ++E I V P ES S I P+ + SS G
Sbjct: 9 VVFFDLETTGINITTDR--IVELCYIKVYPNG--NEESKSMRINPE--MHIPESSSAIHG 62
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
I E V P F++VA ++ + + G +AG N RFD + E F G +
Sbjct: 63 IYDEDVADCPTFKQVARELANTIKGCDFAGFNSNRFDVPMLVEEFLRAGIDIDIRKRKFI 122
Query: 135 SLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
+ + K RR + A Y G + H +L D R EVL
Sbjct: 123 DVQNIYHKLERRTLS---AAYKFYCGKDLENAHSALADTRATYEVL 165
>gi|282878677|ref|ZP_06287446.1| exonuclease [Prevotella buccalis ATCC 35310]
gi|281299222|gb|EFA91622.1| exonuclease [Prevotella buccalis ATCC 35310]
Length = 284
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
I+ FDLETT R +++ I V P E E+ L+ P+ + L+ S G
Sbjct: 9 IIVFDLETTGLDLVKDR--IIQISYIKVFPDGKEEREN--ILVNPE--KNIPLEVSALTG 62
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
IT E V AP+F+++A K+ G +AG+N FD + E F G
Sbjct: 63 ITNEDVADAPKFQDIAQKLAEEFKGCDFAGYNSNHFDIPILAEEFLRAG 111
>gi|167037626|ref|YP_001665204.1| DNA polymerase III PolC [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|320116041|ref|YP_004186200.1| DNA polymerase III subunit alpha [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|166856460|gb|ABY94868.1| DNA polymerase III, alpha subunit [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319929132|gb|ADV79817.1| DNA polymerase III, alpha subunit [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 1407
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 15/176 (8%)
Query: 7 SQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVA 66
++A E FD+ETT ++E GA+ + K+++ +F T + PK +
Sbjct: 386 TEATLEDEFTVFDIETTGLSNINDE--IIEIGAVKIKEGKIID--TFETFVNPK----IP 437
Query: 67 LKS--SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGK 124
+ S ++ GI V+ AP EE+ K + V HN FD + IK +
Sbjct: 438 ISSFITKLTGIDESMVKDAPSIEEILPKFLEFASNSVLVAHNA-NFDVSFIKSKAKKFN- 495
Query: 125 PAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
V ++D+L L+ + N K+ TLA + + + HR++DD E+
Sbjct: 496 -LNVNNAVLDTLE-LSRHLYKDLKNYKLDTLADHLQVKLEHHHRAVDDAMATAEIF 549
>gi|359446651|ref|ZP_09236302.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. BSi20439]
gi|358039457|dbj|GAA72551.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. BSi20439]
Length = 718
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 15/156 (9%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+ETT + G R + E G + + ++V+ +++TLI P+ + + GI
Sbjct: 558 DIETTGGLKGGNR--ITEIGIVKIKQGEIVD--TWTTLINPE--RPIPRFITSLTGINDA 611
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V +AP F E+A + + L+G ++ HN+ FD IK+ IG +P L
Sbjct: 612 MVSNAPIFSEIAAPLLNQLSGSIFVAHNV-NFDYGFIKKELERIGINFKMP-----KLCT 665
Query: 139 LTE--KFGRRAGNMKMATLASYFGLG-QQKHRSLDD 171
+ E K + + + L+++F L HR+LDD
Sbjct: 666 VVESRKAFKGLKSYSLGNLSAHFNLDLTNHHRALDD 701
>gi|256750786|ref|ZP_05491671.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
CCSD1]
gi|256750369|gb|EEU63388.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
CCSD1]
Length = 1407
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 15/176 (8%)
Query: 7 SQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVA 66
++A E FD+ETT ++E GA+ + K+++ +F T + PK +
Sbjct: 386 TEATLEDEFTVFDIETTGLSNINDE--IIEIGAVKIKEGKIID--TFETFVNPK----IP 437
Query: 67 LKS--SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGK 124
+ S ++ GI V+ AP EE+ K + V HN FD + IK +
Sbjct: 438 ISSFITKLTGIDESMVKDAPSIEEILPKFLEFASNSVLVAHNA-NFDVSFIKSKAKKFN- 495
Query: 125 PAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
V ++D+L L+ + N K+ TLA + + + HR++DD E+
Sbjct: 496 -LNVNNAVLDTLE-LSRHLYKDLKNYKLDTLAEHLQVKLEHHHRAVDDAMATAEIF 549
>gi|150020376|ref|YP_001305730.1| DNA polymerase III subunit epsilon [Thermosipho melanesiensis
BI429]
gi|149792897|gb|ABR30345.1| DNA polymerase III, epsilon subunit [Thermosipho melanesiensis
BI429]
Length = 184
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 18 FDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK-DLSAVALKSSRCDGI 75
D ETT + G R ++E + + K++E + +L+ P +SA+ S + GI
Sbjct: 10 LDTETTGLNPYFGDR--IIEVAIVPIYKGKIIESWIYHSLVNPHIKISAL---SEKIHGI 64
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
+ +ESAP E++ D I + ++ HN R D + + A E+G+ P+ V ID+
Sbjct: 65 SNSEIESAPGLEKILDNIRAYAKDTIFVMHN-ARMDLSFLDIATKEVGQ-FPINVRYIDT 122
Query: 136 LGVLTEKFGRRAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVL 179
L + +G++ + +L F G++ HR+L D + +V
Sbjct: 123 LEISLILYGKKRS---LESLVREFKFGEKVPHRALGDAILTAKVF 164
>gi|390456485|ref|ZP_10242013.1| hypothetical protein PpeoK3_20903 [Paenibacillus peoriae KCTC 3763]
Length = 245
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 14 EIVFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
E V FDLETT + G +L FGAI V ++E E F TL+ P+ + + +
Sbjct: 59 ETVVFDLETTGFSAQHGDE--ILSFGAIRVVGDTIMEKEQFYTLVNPR--TVIPEHITEL 114
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGH 105
GITRE + AP S + GRV H
Sbjct: 115 TGITREMTDEAPPLMNGLHDFMSFVGGRVLVAH 147
>gi|375308028|ref|ZP_09773315.1| DNA polymerase III subunit epsilon [Paenibacillus sp. Aloe-11]
gi|375080359|gb|EHS58580.1| DNA polymerase III subunit epsilon [Paenibacillus sp. Aloe-11]
Length = 245
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 14 EIVFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
E V FDLETT + G +L FGAI V ++E E F TL+ P+ + + +
Sbjct: 59 ETVVFDLETTGFSAQHGDE--ILSFGAIRVVGDTIMEKEQFYTLVNPR--TVIPEHITEL 114
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGH 105
GITRE + AP S + GRV H
Sbjct: 115 TGITREMTDEAPPLMNGLHDFMSFVGGRVLVAH 147
>gi|326382523|ref|ZP_08204214.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL
B-59395]
gi|326198642|gb|EGD55825.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL
B-59395]
Length = 623
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 73/171 (42%), Gaps = 20/171 (11%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V DLETT R + E GA+ + R L F+TL+ P A+ + GI
Sbjct: 60 VVVDLETTGGSADDDR--ITEIGAVKI--RGGEVLGEFATLVDPG--RAIPPQIVALTGI 113
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
T + AP EEV G V HN RFD ++++ A + P P S
Sbjct: 114 TTAMLYDAPRIEEVLPAFAEFARGTVLVAHNA-RFDMGFLRKSAARMRLPWPF------S 166
Query: 136 LGVLTEKFGRR------AGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
+ T RR A +K++ LA F + + HR+LDD R +EV
Sbjct: 167 TSLCTVVMARRILSRQEAPTVKLSALAELFQVSVRPTHRALDDARATVEVF 217
>gi|86151527|ref|ZP_01069741.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni
subsp. jejuni 260.94]
gi|315123999|ref|YP_004066003.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni
subsp. jejuni ICDCCJ07001]
gi|85841156|gb|EAQ58404.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni
subsp. jejuni 260.94]
gi|315017721|gb|ADT65814.1| DNA polymerase III alpha chain PolC-type [Campylobacter jejuni
subsp. jejuni ICDCCJ07001]
Length = 253
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+E+T G+ +LE GA + K E+ F + +K K++ + GIT E
Sbjct: 76 DIESTGGVSKGE---ILEIGAAKIQNSK--EIGRFQSFVKVKEIPE---NITELTGITYE 127
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
VE+AP +V L ++ HN+ RFD + I +A E G G++ + +
Sbjct: 128 MVENAPSLAKVLSDFRLFLKDSIFVAHNV-RFDYSFISKALNECG------FGILLNRRI 180
Query: 139 LTEKFGR---RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
T +F + + K+ L + G+ HR+LDD E+ K+C
Sbjct: 181 CTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEIFKYC 227
>gi|348031040|ref|YP_004873726.1| DNA polymerase III subunit epsilon [Glaciecola nitratireducens
FR1064]
gi|347948383|gb|AEP31733.1| DNA polymerase III, epsilon subunit [Glaciecola nitratireducens
FR1064]
Length = 713
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 15/156 (9%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+ETT R R + E G + + ++V + +LI P+ + + GI +
Sbjct: 548 DIETTGGRAQHHR--ITEVGIVKMIGGEVVA--EWQSLINPE--RRIPHNITSLTGIDND 601
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V AP F EVAD I +G V+ HN+ FD IKE F + + P L
Sbjct: 602 MVADAPLFAEVADDIDEFTDGCVFVAHNV-NFDYGFIKEEFNRLERHYRRP-----KLCT 655
Query: 139 LTE--KFGRRAGNMKMATLASYFGLGQQK-HRSLDD 171
+ E K + + +A L +FG+ Q+ HR++ D
Sbjct: 656 VREMRKHYKGLSSYSLANLTKHFGIDMQRHHRAMSD 691
>gi|167040287|ref|YP_001663272.1| DNA polymerase III PolC [Thermoanaerobacter sp. X514]
gi|300914371|ref|ZP_07131687.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561]
gi|307724393|ref|YP_003904144.1| DNA polymerase III subunit alpha [Thermoanaerobacter sp. X513]
gi|166854527|gb|ABY92936.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X514]
gi|300889306|gb|EFK84452.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561]
gi|307581454|gb|ADN54853.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X513]
Length = 1407
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 15/176 (8%)
Query: 7 SQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVA 66
++A E FD+ETT ++E GA+ + K+++ +F T + PK +
Sbjct: 386 TEATLEDEFTVFDIETTGLSNINDE--IIEIGAVKIKEGKIID--TFETFVNPK----IP 437
Query: 67 LKS--SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGK 124
+ S ++ GI V+ AP EE+ K + V HN FD + IK +
Sbjct: 438 ISSFITKLTGIDESMVKDAPSIEEILPKFLEFASNSVLVAHNA-NFDVSFIKSKAKKFN- 495
Query: 125 PAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
V ++D+L L+ + N K+ TLA + + + HR++DD E+
Sbjct: 496 -LNVNNAVLDTLE-LSRHLYKDLKNYKLDTLAEHLQVKLEHHHRAVDDAMATAEIF 549
>gi|134295037|ref|YP_001118772.1| DNA polymerase III subunit epsilon [Burkholderia vietnamiensis G4]
gi|387901655|ref|YP_006331994.1| DNA polymerase III subunit epsilon [Burkholderia sp. KJ006]
gi|134138194|gb|ABO53937.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4]
gi|387576547|gb|AFJ85263.1| DNA polymerase III epsilon subunit [Burkholderia sp. KJ006]
Length = 375
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 10/189 (5%)
Query: 1 MDGFIPSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK 60
M PS A +VF DLETT A R + E G + + P + +++TL+ P
Sbjct: 1 MSDLYPSDPASEQPLVFVDLETTGGSPAEHR--ITEIGVVEIGPG---HMSTWTTLVNPG 55
Query: 61 DLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFA 120
+ + GI+ + V AP F +A +F L+G+++ HN FD ++ F
Sbjct: 56 --QPIPPFIQQLTGISDDMVRDAPSFASLAPALFERLDGKLFVAHNA-SFDRGFLRAEFE 112
Query: 121 EIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLK 180
G V + ++ + F R + + A + Y + +HR+L D + + +
Sbjct: 113 RAGLAFNPDV--LCTVKLSRALFPRESRHGLDALIERYGLVPAARHRALADADLIWQFWR 170
Query: 181 HCATVLFLE 189
T++ LE
Sbjct: 171 QLHTLVPLE 179
>gi|383937840|ref|ZP_09991075.1| DNA polymerase III, epsilon subunit [Streptococcus pseudopneumoniae
SK674]
gi|383715270|gb|EID71241.1| DNA polymerase III, epsilon subunit [Streptococcus pseudopneumoniae
SK674]
Length = 196
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 26/161 (16%)
Query: 49 ELESFSTLIKPKDLSAVALKS--SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHN 106
E++++ + + ++V LKS + GIT E ++ AP EEV + + + G+N
Sbjct: 36 EIDAYDSYVH----TSVPLKSFINGLTGITAETLKDAPPVEEVIQEFQEFVGALLMIGYN 91
Query: 107 IRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRA------GNMKMATLASYFG 160
+ D + E + + V + E F RR+ N+K+ T+AS+ G
Sbjct: 92 AAKSDLPILAEHGLDYSQQYKVDL--------YDEAFERRSSDLHGIANLKLQTVASFLG 143
Query: 161 LGQQKHRSLDDVRMNLEVLK------HCATVLFLESSLPNT 195
Q H SL+D RM V + +L ESSL N
Sbjct: 144 FQGQSHNSLEDARMTARVYESFLESDQARELLETESSLSNN 184
>gi|116618479|ref|YP_818850.1| Rad3-related DNA helicase [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|116097326|gb|ABJ62477.1| Rad3-related DNA helicase [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
Length = 797
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 93/212 (43%), Gaps = 27/212 (12%)
Query: 16 VFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
V DLETT ++ G+ +++ G + R++V+ F + + P L + + +
Sbjct: 8 VVVDLETTGHSVKKGGR---IIQIGMTFIKKRQIVD--HFESFVNPGQL--IDRQIQQLT 60
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
I+++ V++AP FEE+A + ++L V HN+ FD + + F G P + I
Sbjct: 61 HISQKDVQNAPYFEEIAPLLQNLLQNTVIIAHNV-NFDYPYLNDEFERTGFPL-LKSAAI 118
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHCATVLFLESSL 192
D++ + F G ++ L +Y + + HR+ D H +LFL+
Sbjct: 119 DTVQLAQILFPTAPG-YRLLDLTTYLNITLKNAHRANADA--------HATALLFLK--- 166
Query: 193 PNTFNSNLQSSLTVTTRSRSNGKLPCREETSR 224
F L+ +T + G P +T +
Sbjct: 167 ---FWKKLEELPDITLKQLQQGDWPLLRQTQQ 195
>gi|375011664|ref|YP_004988652.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Owenweeksia hongkongensis DSM 17368]
gi|359347588|gb|AEV32007.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Owenweeksia hongkongensis DSM 17368]
Length = 255
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
I FFDLETT R ++E G + + P ES + L+ P+ + ++S G
Sbjct: 9 ICFFDLETTGVNVVTDR--IVEVGVLKIFPNG--NKESKTWLVNPE--RPIPAETSAIHG 62
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
IT E V + P F+E+A ++ ++ G+N +FD I E F G
Sbjct: 63 ITDEKVANEPTFKELAHRVHDMIKDSDLGGYNSNKFDIPMIAEEFLRAG 111
>gi|381336851|ref|YP_005174626.1| Rad3-related DNA helicase [Leuconostoc mesenteroides subsp.
mesenteroides J18]
gi|356644817|gb|AET30660.1| Rad3-related DNA helicase [Leuconostoc mesenteroides subsp.
mesenteroides J18]
Length = 797
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 93/212 (43%), Gaps = 27/212 (12%)
Query: 16 VFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
V DLETT ++ G+ +++ G + R++V+ F + + P L + + +
Sbjct: 8 VVVDLETTGHSVKKGGR---IIQIGMTFIKKRQIVD--HFESFVNPGQL--IDRQIQQLT 60
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
I+++ V++AP FEE+A + ++L V HN+ FD + + F G P + I
Sbjct: 61 HISQKDVQNAPYFEEIAPLLQNLLQNTVIIAHNV-NFDYPYLNDEFERTGFPL-LKSAAI 118
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHCATVLFLESSL 192
D++ + F G ++ L +Y + + HR+ D H +LFL+
Sbjct: 119 DTVQLAQILFPTAPG-YRLLDLTTYLNITLKNAHRANADA--------HATALLFLK--- 166
Query: 193 PNTFNSNLQSSLTVTTRSRSNGKLPCREETSR 224
F L+ +T + G P +T +
Sbjct: 167 ---FWKKLEELPDITLKQLQQGDWPLLRQTQQ 195
>gi|329942403|ref|ZP_08291213.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydophila psittaci Cal10]
gi|332287044|ref|YP_004421945.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
gi|384450183|ref|YP_005662783.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
gi|384451191|ref|YP_005663789.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 01DC11]
gi|384452167|ref|YP_005664764.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 08DC60]
gi|384453141|ref|YP_005665737.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci C19/98]
gi|384454119|ref|YP_005666714.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 02DC15]
gi|392376297|ref|YP_004064075.1| putative DNA polymerase III epsilon chain [Chlamydophila psittaci
RD1]
gi|406593012|ref|YP_006740191.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci NJ1]
gi|406594042|ref|YP_006741235.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci MN]
gi|407453571|ref|YP_006732679.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci 84/55]
gi|407454905|ref|YP_006733796.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci GR9]
gi|407456269|ref|YP_006734842.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci VS225]
gi|407457638|ref|YP_006735943.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci WS/RT/E30]
gi|407458884|ref|YP_006736987.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci M56]
gi|407460256|ref|YP_006738031.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci WC]
gi|410858072|ref|YP_006974012.1| putative DNA polymerase III epsilon chain [Chlamydia psittaci
01DC12]
gi|449070728|ref|YP_007437808.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci Mat116]
gi|313847640|emb|CBY16628.1| putative DNA polymerase III epsilon chain [Chlamydophila psittaci
RD1]
gi|325507354|gb|ADZ18992.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
gi|328815313|gb|EGF85301.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydophila psittaci Cal10]
gi|328914277|gb|AEB55110.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci 6BC]
gi|334691922|gb|AEG85141.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci C19/98]
gi|334692901|gb|AEG86119.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 01DC11]
gi|334693876|gb|AEG87093.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 02DC15]
gi|334694856|gb|AEG88072.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 08DC60]
gi|405780330|gb|AFS19080.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci 84/55]
gi|405781448|gb|AFS20197.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci GR9]
gi|405782474|gb|AFS21222.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci MN]
gi|405783530|gb|AFS22277.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci VS225]
gi|405784818|gb|AFS23564.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci WS/RT/E30]
gi|405786202|gb|AFS24947.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci M56]
gi|405787407|gb|AFS26151.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci WC]
gi|405788884|gb|AFS27626.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci NJ1]
gi|410810967|emb|CCO01610.1| putative DNA polymerase III epsilon chain [Chlamydia psittaci
01DC12]
gi|449039236|gb|AGE74660.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci Mat116]
Length = 249
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 34 VLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKI 93
++EF AI ++++ S TLI P ++ +S R I+ ++ P EV KI
Sbjct: 26 IIEFAAIRFTFDRVID--SMETLINPD--RVISAESQRIHHISDAMLKDQPRIAEVFPKI 81
Query: 94 FSILN-GRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKM 152
S L G GH++ FD + + IG+ +ID+L L +++G N +
Sbjct: 82 KSFLKEGDYIVGHSVG-FDLQVLSQEAERIGESFLSKYYVIDTLR-LAKEYGDSPNN-SL 138
Query: 153 ATLASYFGLGQQ-KHRSLDDVRMNLEVLKH 181
LA +F + HR++ DV +N+ + KH
Sbjct: 139 EALAVHFNVPYDGNHRAMKDVEINISIFKH 168
>gi|186475443|ref|YP_001856913.1| DNA polymerase III subunit epsilon [Burkholderia phymatum STM815]
gi|184191902|gb|ACC69867.1| DNA polymerase III, epsilon subunit [Burkholderia phymatum STM815]
Length = 392
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 7 SQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVA 66
S+ A IVF DLETT R + E G + V P + S++TL+ P +
Sbjct: 7 SEPALDVPIVFVDLETTGGSVGDHR--ITEVGVVEVGPNGV---SSWTTLVDPG--QPIP 59
Query: 67 LKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
+ GIT + V AP FE +A +F+ L+G+++ HN FD ++ F G
Sbjct: 60 PFIQQLTGITNDMVRGAPTFEAIAADLFARLDGKLFIAHNA-SFDRGFLRSEFQRAG 115
>gi|453365745|dbj|GAC78665.1| DNA polymerase III epsilon subunit [Gordonia malaquae NBRC 108250]
Length = 604
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 74/172 (43%), Gaps = 20/172 (11%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+V DLETT + + E GA+ + R L F+TL+ P + + G
Sbjct: 33 LVVVDLETT--GGSSDTDAITEIGAVKI--RGGEVLGEFATLVDPG--REIPPQIVALTG 86
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
IT AP EEV G + HN RFD A +++A A + P P
Sbjct: 87 ITTAMTYDAPPIEEVLPAFAEFARGSILVAHNA-RFDTAFLRKAAARMNLPWPF------ 139
Query: 135 SLGVLTEKFGRR------AGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
+ + T RR A ++K++ LA F + + HR+LDD R ++V
Sbjct: 140 TTSLCTVAMARRILTRDEAPSVKLSALADLFNVSVRPTHRALDDARATVDVF 191
>gi|125973511|ref|YP_001037421.1| DNA polymerase III PolC [Clostridium thermocellum ATCC 27405]
gi|125713736|gb|ABN52228.1| DNA polymerase III, alpha subunit [Clostridium thermocellum ATCC
27405]
Length = 1442
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 11/175 (6%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
E V FD+ETT + + + E GA+ + K+V+ +FST + P+ + +
Sbjct: 427 GEFVVFDIETT--GLSADKDKITEIGAVKIKEGKIVD--TFSTFVNPE--IPIPEFVVKL 480
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
GIT + V AP ++V + + HN FD I+ I + PV
Sbjct: 481 TGITDDMVSDAPTIDKVLPEFLEFVGTSPLVAHN-AVFDTGFIRHNARLINRNVDNPV-- 537
Query: 133 IDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHCATVL 186
ID+L + + F + K+ +A + G+ + HR+LDD + E+ C +L
Sbjct: 538 IDTLELSRQMFPELKKH-KLDVVAKHLGVSLENHHRALDDAKACGEIFIKCLEIL 591
>gi|406591901|ref|YP_006739081.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci CP3]
gi|405787773|gb|AFS26516.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci CP3]
Length = 249
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 34 VLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKI 93
++EF AI ++++ S TLI P ++ +S R I+ ++ P EV KI
Sbjct: 26 IIEFAAIRFTFDRVID--SMETLINPD--RVISAESQRIHHISDAMLKDQPRIAEVFPKI 81
Query: 94 FSILN-GRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKM 152
S L G GH++ FD + + IG+ +ID+L L +++G N +
Sbjct: 82 KSFLKEGDYIVGHSVG-FDLQVLSQEAERIGESFLSKYYVIDTLR-LAKEYGDSPNN-SL 138
Query: 153 ATLASYFGLGQQ-KHRSLDDVRMNLEVLKH 181
LA +F + HR++ DV +N+ + KH
Sbjct: 139 EALAVHFNVPYDGNHRAMKDVEINISIFKH 168
>gi|256003329|ref|ZP_05428320.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM
2360]
gi|281417714|ref|ZP_06248734.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20]
gi|385778569|ref|YP_005687734.1| DNA polymerase III subunit alpha [Clostridium thermocellum DSM
1313]
gi|419723603|ref|ZP_14250718.1| DNA polymerase III polC-type [Clostridium thermocellum AD2]
gi|419724572|ref|ZP_14251634.1| DNA polymerase III polC-type [Clostridium thermocellum YS]
gi|255992619|gb|EEU02710.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM
2360]
gi|281409116|gb|EFB39374.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20]
gi|316940249|gb|ADU74283.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM
1313]
gi|380772119|gb|EIC05977.1| DNA polymerase III polC-type [Clostridium thermocellum YS]
gi|380780285|gb|EIC09968.1| DNA polymerase III polC-type [Clostridium thermocellum AD2]
Length = 1442
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 11/175 (6%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
E V FD+ETT + + + E GA+ + K+V+ +FST + P+ + +
Sbjct: 427 GEFVVFDIETT--GLSADKDKITEIGAVKIKEGKIVD--TFSTFVNPE--IPIPEFVVKL 480
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
GIT + V AP ++V + + HN FD I+ I + PV
Sbjct: 481 TGITDDMVSDAPTIDKVLPEFLEFVGTSPLVAHN-AVFDTGFIRHNARLINRNVDNPV-- 537
Query: 133 IDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHCATVL 186
ID+L + + F + K+ +A + G+ + HR+LDD + E+ C +L
Sbjct: 538 IDTLELSRQMFPELKKH-KLDVVAKHLGVSLENHHRALDDAKACGEIFIKCLEIL 591
>gi|423592479|ref|ZP_17568510.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD048]
gi|401229855|gb|EJR36364.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD048]
Length = 315
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ ++ + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYHNHELVD--QFVSYVNPE--RSIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EV + L+ + HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIAEVLPLFLAFLDTNIIVAHN-ASFDMRFLKSNVNMLGLPEP-KNNVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA V
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAV 171
>gi|379729757|ref|YP_005321953.1| putative DNA polymerase III subunit epsilon [Saprospira grandis
str. Lewin]
gi|378575368|gb|AFC24369.1| putative DNA polymerase III epsilon chain [Saprospira grandis str.
Lewin]
Length = 248
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+VFFDLETT R +++ GAI + P E+++ L+ P+ + +S G
Sbjct: 9 LVFFDLETTGTSIVNDR--IVQIGAIKLFPDGRTEVKN--RLVNPQ--MPIPEGASAVHG 62
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVP 129
I + V + P+F ++A + L AG+N FD + E FA G P P
Sbjct: 63 IYDKDVVNEPKFRQLAKAFYGWLKDSDLAGYNSDNFDIPMLAEEFARAGIEYPTP 117
>gi|377571758|ref|ZP_09800861.1| DNA polymerase III epsilon subunit [Gordonia terrae NBRC 100016]
gi|377530893|dbj|GAB46026.1| DNA polymerase III epsilon subunit [Gordonia terrae NBRC 100016]
Length = 620
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 81/197 (41%), Gaps = 29/197 (14%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+V DLETT A R + E GA+ + +++ F+TL+ P + + G
Sbjct: 64 LVVVDLETTGSDPARDR--ITEIGAVKIRGGEIIG--EFATLVDPG--RPIPPQIVTLTG 117
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
IT + AP E V F G + HN RFD +++ + P
Sbjct: 118 ITTAMLTDAPRIESVLPSFFEFARGSILVAHNA-RFDMGFLRQNAIRLQLP------WTF 170
Query: 135 SLGVLTEKFGRR------AGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL-------- 179
L + T RR A +K++ LA F + + HR+LDD R +EV
Sbjct: 171 GLTLCTVTMARRILTRDEAPTVKLSALADLFDVAVRPTHRALDDARATVEVFHRLLERVG 230
Query: 180 -KHCATVLFLESSLPNT 195
+ ATV L S LP T
Sbjct: 231 NQGIATVGDLTSYLPRT 247
>gi|121602632|ref|YP_988343.1| DNA polymerase III, epsilon subunit [Bartonella bacilliformis
KC583]
gi|421760162|ref|ZP_16196983.1| DNA polymerase III subunit epsilon [Bartonella bacilliformis INS]
gi|120614809|gb|ABM45410.1| DNA polymerase III, epsilon subunit [Bartonella bacilliformis
KC583]
gi|411176634|gb|EKS46651.1| DNA polymerase III subunit epsilon [Bartonella bacilliformis INS]
Length = 234
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 8/164 (4%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
+ FD ETT + R ++E G + + R L F + P+ + + + G+
Sbjct: 4 IIFDTETTGLDKDNDR--IIEIGCVEMVDRYLTG-RQFHVYLNPQGV-IIPDEVVAIHGL 59
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
T E ++ +F+++AD++ ++G + HN FD + + + KP +ID+
Sbjct: 60 TNERLKGEKKFDDIADELLEFIDGAMMIAHN-ANFDISFLNAELKRVNKPLISIDNVIDT 118
Query: 136 LGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
L + KF G + L FG+ HR L ++ E+L
Sbjct: 119 LAMARRKF--PMGPNSLDVLCKRFGI-DNSHRILHGALLDAEIL 159
>gi|385682020|ref|ZP_10055948.1| hypothetical protein AATC3_39113 [Amycolatopsis sp. ATCC 39116]
Length = 573
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 73/171 (42%), Gaps = 20/171 (11%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V FDLETT + + E GA+ V R L F+TL+ P V + GI
Sbjct: 28 VVFDLETTGTKPGPDG--ITEIGAVKV--RGGEVLGEFATLVDPG--MPVPPQIVALTGI 81
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
T + AP+ + V +G V HN FD + ++ A G P P P
Sbjct: 82 TSAMLHDAPKIDRVLPAFLEFASGAVLVAHNA-PFDTSFMRAACLHHGYPWPKPA----- 135
Query: 136 LGVLTEKFGRR------AGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
V T + RR + + +++ LA+ FG HR+LDD R + VL
Sbjct: 136 -VVCTVRLARRVLTRQDSPSFRLSALAALFGSPVTPNHRALDDARATVHVL 185
>gi|118463087|ref|YP_879676.1| DNA polymerase III subunit epsilon [Mycobacterium avium 104]
gi|118164374|gb|ABK65271.1| DNA polymerase III subunit epsilon [Mycobacterium avium 104]
Length = 329
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 16/134 (11%)
Query: 51 ESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRF 110
+S +L+ P V + G+T +E P+F ++A + +L GR HN+ F
Sbjct: 50 QSVVSLLNP----GVDPGPTHVHGLTAAMLEDQPQFADIAGDVVEVLRGRTLVAHNV-AF 104
Query: 111 DCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRR----AGNMKMATLASYFGLGQQK- 165
D A + G PV M T + RR N+++ TLA+Y+G+ QQ+
Sbjct: 105 DYAFLAAEAELAGIELPVDTVMC------TVELARRLDLGIDNLRLETLAAYWGVTQQRP 158
Query: 166 HRSLDDVRMNLEVL 179
H + DD + VL
Sbjct: 159 HDAFDDAMVLTGVL 172
>gi|375307349|ref|ZP_09772638.1| Inhibitor of the KinA pathway to sporulation, exonuclease
[Paenibacillus sp. Aloe-11]
gi|375080694|gb|EHS58913.1| Inhibitor of the KinA pathway to sporulation, exonuclease
[Paenibacillus sp. Aloe-11]
Length = 223
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 19/181 (10%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVC--PRKLVELESFSTLIKPKDLSAVALKSSR 71
+ + +DLE TV R A +++ GA+ V L ++F + ++P + ++ + +
Sbjct: 2 QYIIYDLEFTVSRNARYSSEIIDIGAVKVVQGDDGLYVADTFHSFVRPSNRPVLSTDTVQ 61
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCA---RIKEAFAEIGKPAPV 128
GIT+ +++AP F E ++ + W G + + CA ++ + V
Sbjct: 62 FTGITQRDIDAAPLFPEAVEQFVA------WLGTDSPYYLCAWGPDDRQKLVSHCRTHHV 115
Query: 129 PVGMIDSLGVLTEKFGR---RAGNMKMATLAS-----YFGLGQQKHRSLDDVRMNLEVLK 180
+G I + + ++ R +G + +L+ + Q+HR+LDD +V
Sbjct: 116 DLGWIHNTNDIQKQISRLFGSSGKYRQLSLSQALELCHIDFDGQQHRALDDAINTAQVFM 175
Query: 181 H 181
H
Sbjct: 176 H 176
>gi|365540520|ref|ZP_09365695.1| DNA polymerase III subunit epsilon [Vibrio ordalii ATCC 33509]
Length = 247
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 88/210 (41%), Gaps = 27/210 (12%)
Query: 15 IVFFDLETTVPRRAGQRFW----VLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
IV D ETT R G + ++E GA+ + RKL F +KP + L++
Sbjct: 12 IVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTG-RHFHVYLKPD--REIQLEAI 68
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAF----AEIGKPA 126
GIT E + P++ +V + + G HN FD + F A+IGK
Sbjct: 69 EIHGITDEFLVDKPQYRDVHQEFLDFIKGAELVAHNA-PFDVGFMDYEFRKLDAKIGKTE 127
Query: 127 PVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVL 186
+ D+L + F + N+ + L +G+ HR+L ++ E+L A V
Sbjct: 128 QY-CKVTDTLAMAKRIFPGKRNNLDI--LCDRYGI-DNSHRTLHGALLDAEIL---ADVY 180
Query: 187 FLESSLPNTFNSNLQSSLTVTTRSRSNGKL 216
L + Q+SL +RS+G +
Sbjct: 181 LLMTG--------GQTSLQFNAGTRSDGSV 202
>gi|336320547|ref|YP_004600515.1| DNA polymerase III, epsilon subunit [[Cellvibrio] gilvus ATCC
13127]
gi|336104128|gb|AEI11947.1| DNA polymerase III, epsilon subunit [[Cellvibrio] gilvus ATCC
13127]
Length = 622
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 72/166 (43%), Gaps = 10/166 (6%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V DLETT A + E GA+ V R L F TL+ P V GI
Sbjct: 49 VVVDLETTGGTPAD--CAITEIGAVKV--RGGQVLGEFQTLVDPG--GPVPPFIQVLTGI 102
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
T + AP EEV +G V HN FD ++ A A G P P ++D+
Sbjct: 103 TTAMLIGAPPIEEVLPAFLEFAHGAVLVAHNA-PFDVGFLRAAAARTGHAWPGP-RVVDT 160
Query: 136 LGVLTEKFGR-RAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
+ + R A N K++TLA+ F HR+LDD R ++VL
Sbjct: 161 VRLARRVVTRDEAPNHKLSTLAALFHAEVTPTHRALDDARATVDVL 206
>gi|336123526|ref|YP_004565574.1| DNA polymerase III subunit epsilon [Vibrio anguillarum 775]
gi|335341249|gb|AEH32532.1| DNA polymerase III, epsilon chain [Vibrio anguillarum 775]
Length = 247
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 89/210 (42%), Gaps = 27/210 (12%)
Query: 15 IVFFDLETTVPRRAGQRFW----VLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
IV D ETT R G + ++E GA+ + RKL F +KP + L++
Sbjct: 12 IVVLDTETTGMNREGGPHYEGHRIVEIGAVEIINRKLTG-RHFHVYLKPD--REIQLEAI 68
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAF----AEIGKPA 126
GIT E + P++ +V + + G HN FD + F A+IGK
Sbjct: 69 EIHGITDEFLMDKPQYRDVHQEFLDFIKGAELVAHNA-PFDVGFMDYEFRKLDAKIGKTE 127
Query: 127 PVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVL 186
+ D+L + F + N+ + L +G+ HR+L ++ E+L A V
Sbjct: 128 QY-CKVTDTLAMAKRIFPGKRNNLDI--LCDRYGI-DNSHRTLHGALLDAEIL---ADVY 180
Query: 187 FLESSLPNTFNSNLQSSLTVTTRSRSNGKL 216
L + Q+SL + +RS+G +
Sbjct: 181 LL--------MTGGQTSLQFSAGTRSDGSV 202
>gi|309776025|ref|ZP_07671017.1| DNA polymerase III, alpha subunit, Gram-positive type
[Erysipelotrichaceae bacterium 3_1_53]
gi|308916307|gb|EFP62055.1| DNA polymerase III, alpha subunit, Gram-positive type
[Erysipelotrichaceae bacterium 3_1_53]
Length = 1271
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 13/146 (8%)
Query: 18 FDLETTVPRRAGQRF-WVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGIT 76
FDLETT RF ++EFG IV R ++ S IKP A++ ++ GIT
Sbjct: 224 FDLETT---GLSSRFDHIIEFGGQIVKDRACIK--SLQMFIKPP--VALSAFTTELTGIT 276
Query: 77 REAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG-KPAPVPVGMIDS 135
E +++A F + D+I + + HN FD + + A IG KP PV ID+
Sbjct: 277 EEHMKNAKSFADSIDEILDFIGDSILVAHN-ATFDYNFLNDELARIGRKPIMNPV--IDT 333
Query: 136 LGVLTEKFGRRAGNMKMATLASYFGL 161
L + R G ++ +A +G+
Sbjct: 334 LDLARSMQADRKG-YRLGQIARSYGI 358
>gi|260063517|ref|YP_003196597.1| DNA polymerase III subunit epsilon [Robiginitalea biformata
HTCC2501]
gi|88782961|gb|EAR14135.1| putative DNA polymerase III epsilon chain [Robiginitalea biformata
HTCC2501]
Length = 258
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 73/168 (43%), Gaps = 14/168 (8%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
I FFDLETT A R ++E + V P ES + L+ P + ++S G
Sbjct: 9 ICFFDLETTGTNIATDR--IVELAILKVFPNG--NKESKTWLVNPG--VPIPEEASAIHG 62
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
IT E V P F E+A +++ ++ G AG N RFD + E G V M +
Sbjct: 63 ITDEKVAGEPTFRELAREVYQMIQGCDLAGFNSNRFDIPLLAEELLRAG----VDFDMKN 118
Query: 135 SLGVLTEKFGRRAGNMKMATLASYFGLGQQ---KHRSLDDVRMNLEVL 179
++ V + + +A A F G++ H + D + EVL
Sbjct: 119 AVSVDVQTIFHKMEKRTLAA-AYQFYCGKELTDAHSATADTQATYEVL 165
>gi|313115651|ref|ZP_07801107.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii
KLE1255]
gi|310622037|gb|EFQ05536.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii
KLE1255]
Length = 1417
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 69/161 (42%), Gaps = 12/161 (7%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
E FD ETT + ++ E GA+IV ++VE F T +KP + K +
Sbjct: 395 GEFCVFDTETTGLDPGVE--YMTEIGAVIVKNGEVVE--EFDTFVKPG--KPITPKITEL 448
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG-KPAPVPVG 131
GIT E V AP +E + R+ GHN+ FD ++ A G K P
Sbjct: 449 TGITNEMVADAPGEKEALEAFLKFAGDRILVGHNVHAFDMRFLRAAAKRSGIKLEPT--- 505
Query: 132 MIDSLGVLTEKFGRRAGNMKMATLASYFGL-GQQKHRSLDD 171
ID+L + + N K T+ + L + HR+ +D
Sbjct: 506 YIDTL-TMAQAMYPGLHNYKQGTINKHLELPAYEAHRACED 545
>gi|146341316|ref|YP_001206364.1| DNA-directed DNA polymerase [Bradyrhizobium sp. ORS 278]
gi|146194122|emb|CAL78141.1| hypothetical protein; putative DNA-directed DNA polymerase
[Bradyrhizobium sp. ORS 278]
Length = 737
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 4 FIPSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLS 63
F P Q + V D+ETT +G R + E GA+ V +LVE + +LI P+
Sbjct: 557 FDPEQ-----DYVVVDIETTGSWSSGDR--ITEIGAVKVRNHQLVE--QWHSLINPQ--R 605
Query: 64 AVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
+ K GIT + V AP F E+AD + + ++ HN+ FD + F +
Sbjct: 606 PIPAKIVELTGITNQMVRDAPVFHEIADSFMAFMGDGIFVAHNV-NFDYGFLSSEFERLE 664
Query: 124 KPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLK 180
+ P + +G+ G + + L + +G+ HR+L D R +L
Sbjct: 665 RRFRFP-KLCTCVGMRRRYPGHTS--YGLGKLCAIYGIELDDHHRALCDARAAAHLLN 719
>gi|372209263|ref|ZP_09497065.1| exonuclease [Flavobacteriaceae bacterium S85]
Length = 258
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 12 TAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
T +VFFDLETT A R ++E + V P ES + L+ P + +SS
Sbjct: 6 TKPLVFFDLETTGVNIAVDR--IVEISILKVYPNG--NKESKTWLVNPT--VKIPKESSD 59
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKE 117
GIT E V++ P F++++ +++ ++ G AG N RFD + E
Sbjct: 60 IHGITDEKVKNEPTFKQLSKEVYQLIKGCDLAGFNSNRFDIPLLAE 105
>gi|256390076|ref|YP_003111640.1| exonuclease RNase T and DNA polymerase III [Catenulispora
acidiphila DSM 44928]
gi|256356302|gb|ACU69799.1| Exonuclease RNase T and DNA polymerase III [Catenulispora
acidiphila DSM 44928]
Length = 204
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 52 SFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFD 111
S+ +L++P+ + ++R GITRE VE AP FE+V ++ +L RV HN+ FD
Sbjct: 46 SWDSLLRPQG----GVGATRVHGITREMVEPAPRFEDVGMELHGLLVDRVVVAHNL-AFD 100
Query: 112 CARIKEAFAEIGKPAP 127
+ FA +G +P
Sbjct: 101 AKFLVTQFARLGVHSP 116
>gi|229098054|ref|ZP_04229002.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-29]
gi|228685245|gb|EEL39175.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-29]
Length = 318
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 12 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPSRITSLT 65
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 66 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGFPEP-KNKVI 123
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + C ++
Sbjct: 124 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCTSI 174
>gi|229117071|ref|ZP_04246451.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-3]
gi|423378632|ref|ZP_17355916.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG1O-2]
gi|423441686|ref|ZP_17418592.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG4X2-1]
gi|423448089|ref|ZP_17424968.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG5O-1]
gi|423464759|ref|ZP_17441527.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG6O-1]
gi|423534101|ref|ZP_17510519.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuB2-9]
gi|423540632|ref|ZP_17517023.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuB4-10]
gi|423546865|ref|ZP_17523223.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuB5-5]
gi|423623345|ref|ZP_17599123.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD148]
gi|228666360|gb|EEL21822.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-3]
gi|401130500|gb|EJQ38169.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG5O-1]
gi|401174167|gb|EJQ81379.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuB4-10]
gi|401180369|gb|EJQ87531.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuB5-5]
gi|401258514|gb|EJR64699.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD148]
gi|401634279|gb|EJS52046.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG1O-2]
gi|402416518|gb|EJV48834.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG4X2-1]
gi|402419196|gb|EJV51476.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
BAG6O-1]
gi|402463071|gb|EJV94773.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuB2-9]
Length = 315
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPSRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGFPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + C ++
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCTSI 171
>gi|308180572|ref|YP_003924700.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
plantarum subsp. plantarum ST-III]
gi|308046063|gb|ADN98606.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
plantarum subsp. plantarum ST-III]
Length = 934
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 10/153 (6%)
Query: 19 DLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITR 77
D+ETT + G R +++ G V K++ +F+T + P L+ V GI+
Sbjct: 11 DIETTGTSVKDGDR--IIQIGCAFVKNNKIIN--TFATDVNP--LTTVPAVIENLTGISN 64
Query: 78 EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLG 137
V AP F+++A ++S+L G V+ HN+ FD I +G P +P+ +D++
Sbjct: 65 ARVRKAPPFDDLAGTVYSLLQGTVFVAHNV-NFDLPFINSELQRVGYPE-LPIQAVDTVS 122
Query: 138 VLTEKFGRRAGNMKMATLASYFGLGQQKHRSLD 170
L++ A + ++ L+ + S D
Sbjct: 123 -LSQILLPTASSFRLRDLSHLLAIDHNHPHSAD 154
>gi|418275317|ref|ZP_12890640.1| ATP-dependent helicase DinG [Lactobacillus plantarum subsp.
plantarum NC8]
gi|376008868|gb|EHS82197.1| ATP-dependent helicase DinG [Lactobacillus plantarum subsp.
plantarum NC8]
Length = 934
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 10/153 (6%)
Query: 19 DLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITR 77
D+ETT + G R +++ G V K++ +F+T + P L+ V GI+
Sbjct: 11 DIETTGTSVKDGDR--IIQIGCAFVKNNKIIN--TFATDVNP--LTTVPAVIENLTGISN 64
Query: 78 EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLG 137
V AP F+++A ++S+L G V+ HN+ FD I +G P +P+ +D++
Sbjct: 65 ARVRKAPPFDDLAGTVYSLLQGTVFVAHNV-NFDLPFINSELQRVGYPE-LPIQAVDTVS 122
Query: 138 VLTEKFGRRAGNMKMATLASYFGLGQQKHRSLD 170
L++ A + ++ L+ + S D
Sbjct: 123 -LSQILLPTASSFRLRDLSHLLAIDHNHPHSAD 154
>gi|308068487|ref|YP_003870092.1| DNA polymerase III subunit epsilon [Paenibacillus polymyxa E681]
gi|305857766|gb|ADM69554.1| DNA polymerase III, epsilon chain [Paenibacillus polymyxa E681]
Length = 245
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 14 EIVFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
E V FDLETT + G +L FGAI V ++E E F TL+ P+ + + +
Sbjct: 59 ETVVFDLETTGFSAQHGDE--ILSFGAIRVVGDMVMEKEQFYTLVNPR--TVIPEHITEL 114
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGH 105
GITRE + AP S + GRV H
Sbjct: 115 TGITREMTDQAPPLMNGLHDFMSFVGGRVLVAH 147
>gi|300767360|ref|ZP_07077272.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|448821251|ref|YP_007414413.1| ATP-dependent helicase DinG [Lactobacillus plantarum ZJ316]
gi|300495179|gb|EFK30335.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|448274748|gb|AGE39267.1| ATP-dependent helicase DinG [Lactobacillus plantarum ZJ316]
Length = 936
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 10/153 (6%)
Query: 19 DLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITR 77
D+ETT + G R +++ G V K++ +F+T + P L+ V GI+
Sbjct: 13 DIETTGTSVKDGDR--IIQIGCAFVKNNKIIN--TFATDVNP--LTTVPAVIENLTGISN 66
Query: 78 EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLG 137
V AP F+++A ++S+L G V+ HN+ FD I +G P +P+ +D++
Sbjct: 67 ARVRKAPPFDDLAGTVYSLLQGTVFVAHNV-NFDLPFINSELQRVGYPE-LPIQAVDTVS 124
Query: 138 VLTEKFGRRAGNMKMATLASYFGLGQQKHRSLD 170
L++ A + ++ L+ + S D
Sbjct: 125 -LSQILLPTASSFRLRDLSHLLAIDHNHPHSAD 156
>gi|259503450|ref|ZP_05746352.1| ATP-dependent helicase DinG [Lactobacillus antri DSM 16041]
gi|259168528|gb|EEW53023.1| ATP-dependent helicase DinG [Lactobacillus antri DSM 16041]
Length = 929
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 9/119 (7%)
Query: 19 DLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITR 77
DLETT G R +++ G ++V +++ F T I P++ A+ + GI
Sbjct: 3 DLETTGTSVNHGDR--IIQVGCVLVQDGQVIN--RFETKINPRERIPRAV--VQLTGIQE 56
Query: 78 EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSL 136
V AP FE+VA I+S+L G ++ HN+ FD + G P P+ + ID++
Sbjct: 57 RDVRKAPLFEDVAGTIYSLLTGTIFVAHNV-NFDFPFLNAELERAGYP-PLSIKAIDTV 113
>gi|15605265|ref|NP_220051.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
D/UW-3/CX]
gi|385243743|ref|YP_005811589.1| Exonuclease family protein [Chlamydia trachomatis D-EC]
gi|385244623|ref|YP_005812467.1| Exonuclease family protein [Chlamydia trachomatis D-LC]
gi|3328974|gb|AAC68138.1| DNA Pol III Epsilon Chain [Chlamydia trachomatis D/UW-3/CX]
gi|297748666|gb|ADI51212.1| Exonuclease family protein [Chlamydia trachomatis D-EC]
gi|297749546|gb|ADI52224.1| Exonuclease family protein [Chlamydia trachomatis D-LC]
gi|440525460|emb|CCP50711.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
K/SotonK1]
gi|440528137|emb|CCP53621.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
D/SotonD5]
gi|440529027|emb|CCP54511.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
D/SotonD6]
gi|440532601|emb|CCP58111.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
G/SotonG1]
Length = 250
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 12/172 (6%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
E V D ETT R V+EF AI ++++ S LI P+ AV+ +S +
Sbjct: 7 VEFVCLDCETTGLDVKKDR--VIEFAAIRFTFDEIID--SVEFLIHPE--RAVSAESQKI 60
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVW-AGHNIRRFDCARIKEAFAEIGKPA-PVPV 130
I+ + P+F EV +I R GH++ FD + + +G+ P
Sbjct: 61 HKISDAMLRDKPKFGEVFSRIKGFFKERDHIVGHHVG-FDLQVLSQESERLGETLLPKHH 119
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLKH 181
+ID+L L + +G N + LA +F + Q HR++ DV MN++V KH
Sbjct: 120 YVIDTLR-LAKGYGDSPNN-SLEALARHFNVPHQGNHRAMKDVEMNVKVFKH 169
>gi|399926160|ref|ZP_10783518.1| exonuclease, RNase T and DNA polymerase III [Myroides injenensis
M09-0166]
Length = 257
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
I FFDLETT A R ++E G + V P ES + L+ P + S++ G
Sbjct: 9 ICFFDLETTGIDVAKDR--IVEIGILKVFPNG--NKESKTWLVNPG--MPIPEHSTKIHG 62
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
IT E V + P F E+A I++++ AG N RFD + E G
Sbjct: 63 ITDEQVANEPTFNELAPHIYNMIKDSDLAGFNSDRFDIPLLVEELLRAG 111
>gi|148992870|ref|ZP_01822489.1| exonuclease [Streptococcus pneumoniae SP9-BS68]
gi|168490187|ref|ZP_02714386.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP195]
gi|417678947|ref|ZP_12328344.1| exonuclease family protein [Streptococcus pneumoniae GA17570]
gi|418125618|ref|ZP_12762528.1| exonuclease family protein [Streptococcus pneumoniae GA44511]
gi|418191538|ref|ZP_12828042.1| exonuclease family protein [Streptococcus pneumoniae GA47388]
gi|418214166|ref|ZP_12840901.1| exonuclease family protein [Streptococcus pneumoniae GA54644]
gi|418234191|ref|ZP_12860770.1| exonuclease family protein [Streptococcus pneumoniae GA08780]
gi|419484142|ref|ZP_14023918.1| exonuclease family protein [Streptococcus pneumoniae GA43257]
gi|419508064|ref|ZP_14047717.1| exonuclease family protein [Streptococcus pneumoniae GA49542]
gi|421220142|ref|ZP_15676992.1| exonuclease family protein [Streptococcus pneumoniae 2070425]
gi|421222468|ref|ZP_15679259.1| exonuclease family protein [Streptococcus pneumoniae 2070531]
gi|421278768|ref|ZP_15729576.1| exonuclease family protein [Streptococcus pneumoniae GA17301]
gi|421294342|ref|ZP_15745065.1| exonuclease [Streptococcus pneumoniae GA56113]
gi|421300859|ref|ZP_15751529.1| exonuclease [Streptococcus pneumoniae GA19998]
gi|147928322|gb|EDK79338.1| exonuclease [Streptococcus pneumoniae SP9-BS68]
gi|183571454|gb|EDT91982.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae SP195]
gi|332073326|gb|EGI83805.1| exonuclease family protein [Streptococcus pneumoniae GA17570]
gi|353797584|gb|EHD77917.1| exonuclease family protein [Streptococcus pneumoniae GA44511]
gi|353857439|gb|EHE37402.1| exonuclease family protein [Streptococcus pneumoniae GA47388]
gi|353871449|gb|EHE51320.1| exonuclease family protein [Streptococcus pneumoniae GA54644]
gi|353888436|gb|EHE68210.1| exonuclease family protein [Streptococcus pneumoniae GA08780]
gi|379583653|gb|EHZ48530.1| exonuclease family protein [Streptococcus pneumoniae GA43257]
gi|379611782|gb|EHZ76504.1| exonuclease family protein [Streptococcus pneumoniae GA49542]
gi|395588419|gb|EJG48749.1| exonuclease family protein [Streptococcus pneumoniae 2070425]
gi|395588636|gb|EJG48964.1| exonuclease family protein [Streptococcus pneumoniae 2070531]
gi|395880201|gb|EJG91254.1| exonuclease family protein [Streptococcus pneumoniae GA17301]
gi|395894632|gb|EJH05612.1| exonuclease [Streptococcus pneumoniae GA56113]
gi|395898419|gb|EJH09363.1| exonuclease [Streptococcus pneumoniae GA19998]
Length = 196
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 85/196 (43%), Gaps = 31/196 (15%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKS--SR 71
+ + FDLE + GQ + A V R E++++ + + ++V LKS +
Sbjct: 6 DYIAFDLE--FNQHEGQTHLI---QASAVRFRDGREIDAYDSYVH----TSVPLKSFING 56
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GIT E ++ AP E+V ++ + + G+N + D + E + + V +
Sbjct: 57 LTGITAETLKDAPPVEKVLEEFQEFVGSLLMIGYNAAKSDLPILAEHGLDYSQQYKVDL- 115
Query: 132 MIDSLGVLTEKFGRRA------GNMKMATLASYFGLGQQKHRSLDDVRMNLEVLK----- 180
E F RR+ N+K+ T+AS+ G Q H SL+D RM V +
Sbjct: 116 -------YDEAFERRSSDLHGIANLKLQTVASFLGFQGQSHNSLEDARMTARVYESFLES 168
Query: 181 -HCATVLFLESSLPNT 195
+L ESSL N
Sbjct: 169 DQARELLETESSLSNN 184
>gi|260767799|ref|ZP_05876734.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
gi|260617308|gb|EEX42492.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
Length = 246
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 89/209 (42%), Gaps = 29/209 (13%)
Query: 15 IVFFDLETTV------PRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALK 68
IV D ETT P G R ++E GA+ + RKL F +KP A+ +
Sbjct: 12 IVVLDTETTGMNLEGGPHYEGHR--IIEIGAVEIINRKLTG-RHFHVYLKPD--RAIQDE 66
Query: 69 SSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPV 128
+ GIT E + PE+++V ++ + G HN FD + F+++ P
Sbjct: 67 AIEVHGITDEFLVDKPEYKDVHEEFLDFIRGAELVAHNA-PFDVGFMDYEFSKLSIPTAK 125
Query: 129 P---VGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
+ D+L + + F + N+ + L +G+ HR+L ++ E+L A V
Sbjct: 126 TDELCKVTDTLAMAKKIFPGKRNNLDV--LCDRYGI-DNSHRTLHGALLDAEIL---ADV 179
Query: 186 LFLESSLPNTFNSNLQSSLTVTTRSRSNG 214
L + Q+SL + S+ NG
Sbjct: 180 YLLMTG--------GQTSLQFSGSSQENG 200
>gi|380032554|ref|YP_004889545.1| ATP-dependent helicase DinG [Lactobacillus plantarum WCFS1]
gi|342241797|emb|CCC79031.1| ATP-dependent helicase DinG [Lactobacillus plantarum WCFS1]
Length = 934
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 10/153 (6%)
Query: 19 DLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITR 77
D+ETT + G R +++ G V K++ +F+T + P L+ V GI+
Sbjct: 11 DIETTGTSVKDGDR--IIQIGCAFVKNNKIIN--TFATDVNP--LTTVPAVIENLTGISN 64
Query: 78 EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLG 137
V AP F+++A ++S+L G V+ HN+ FD I +G P +P+ +D++
Sbjct: 65 ARVRKAPPFDDLAGTVYSLLQGTVFVAHNV-NFDLPFINSELQRVGYPE-LPIQAVDTVS 122
Query: 138 VLTEKFGRRAGNMKMATLASYFGLGQQKHRSLD 170
L++ A + ++ L+ + S D
Sbjct: 123 -LSQILLPTASSFRLRDLSHLLAIDHNHPHSAD 154
>gi|386714550|ref|YP_006180873.1| bifunctional ATP-dependent DNA helicase DinG / DnaQ family
exonuclease [Halobacillus halophilus DSM 2266]
gi|384074106|emb|CCG45599.1| bifunctional ATP-dependent DNA helicase DinG / DnaQ family
exonuclease [Halobacillus halophilus DSM 2266]
Length = 930
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 12/163 (7%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT + + ++E G +I V ++ FS+LI P + + GI E
Sbjct: 8 DLETTGNAKEDR---IIEIGIVITKETGSV-IKEFSSLIYPD--RGIPPFITSLTGIEEE 61
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG-KPAPVPVGMIDSLG 137
V AP F E+ D+++ ++ HNI FD + F G +P PV ID++
Sbjct: 62 DVLDAPFFSEIIDEVYHLIKDSYIVAHNI-EFDLGFLNGEFKRCGYEPLHNPV--IDTVE 118
Query: 138 VLTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVL 179
L + K+ LA G+G + HR+L D ++ ++L
Sbjct: 119 -LARILIPTSPTFKLGQLADLLGMGHDRPHRALSDAQVTRDLL 160
>gi|254556626|ref|YP_003063043.1| ATP-dependent helicase DinG [Lactobacillus plantarum JDM1]
gi|254045553|gb|ACT62346.1| ATP-dependent helicase DinG [Lactobacillus plantarum JDM1]
Length = 934
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 10/153 (6%)
Query: 19 DLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITR 77
D+ETT + G R +++ G V K++ +F+T + P L+ V GI+
Sbjct: 11 DIETTGTSVKDGDR--IIQIGCAFVKNNKIIN--TFATDVNP--LTTVPAVIENLTGISN 64
Query: 78 EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLG 137
V AP F+++A ++S+L G V+ HN+ FD I +G P +P+ +D++
Sbjct: 65 ARVRKAPPFDDLAGTVYSLLQGTVFVAHNV-NFDLPFINSELQRVGYPE-LPIQAVDTVS 122
Query: 138 VLTEKFGRRAGNMKMATLASYFGLGQQKHRSLD 170
L++ A + ++ L+ + S D
Sbjct: 123 -LSQILLPTASSFRLRDLSHLLAIDHNHPHSAD 154
>gi|251797402|ref|YP_003012133.1| DNA polymerase III subunit alpha [Paenibacillus sp. JDR-2]
gi|247545028|gb|ACT02047.1| DNA polymerase III, alpha subunit [Paenibacillus sp. JDR-2]
Length = 1437
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 10/164 (6%)
Query: 9 AAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALK 68
A TAE + FD+ETT + ++E + + R+ E++ FST I P + +
Sbjct: 415 ALATAEYIVFDIETTGLSIINNK--IIELAGVKM--REGKEVDRFSTFINPHE--KIPYH 468
Query: 69 SSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPV 128
+ I E V+ APE E + + + HN RFD I+ IG P V
Sbjct: 469 IQQLTNINDEMVKDAPELEPKLREFIDFIGDSILVAHN-ARFDIGFIQANLKSIGMP-DV 526
Query: 129 PVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDD 171
++D+L L N ++ TL++ + + HR++DD
Sbjct: 527 TNPVLDTLE-LARFLHPTMKNHRLNTLSAKYKVSLDNHHRAVDD 569
>gi|326803711|ref|YP_004321529.1| DnaQ family exonuclease/DinG family helicase [Aerococcus urinae
ACS-120-V-Col10a]
gi|326651377|gb|AEA01560.1| exonuclease DnaQ family/helicase DinG family [Aerococcus urinae
ACS-120-V-Col10a]
Length = 890
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 54/197 (27%), Positives = 90/197 (45%), Gaps = 22/197 (11%)
Query: 19 DLETTVPR-RAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITR 77
DLETT + G R +++ G + + +K ++ F + I+P L V S GI
Sbjct: 9 DLETTGTKYNRGDR--IIQIGVVFLEGQK--KIGEFKSNIQP--LIPVPKNISDLTGIQT 62
Query: 78 EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLG 137
E + AP FE++A +F L V+ HNI FD + +F +G PA +D G
Sbjct: 63 EDLRDAPLFEDIAPDLFQQLQDCVFVAHNI-NFDYKFLSASFEGVGLPA------LDLEG 115
Query: 138 VLTEKFGR----RAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATVLFLESSL 192
+ T + R +A + K+ + G+ K H +++D R ++L V+ +SL
Sbjct: 116 IDTVELIRVLYPQAASYKLGDFSLDHGINLVKAHTAIEDARATAQLL---VQVMDKVASL 172
Query: 193 PNTFNSNLQSSLTVTTR 209
P + +Q L R
Sbjct: 173 PESLYKAMQPWLKFFIR 189
>gi|381209154|ref|ZP_09916225.1| hypothetical protein LGrbi_04393 [Lentibacillus sp. Grbi]
Length = 225
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 19/180 (10%)
Query: 4 FIPSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLS 63
+ G + V D ET +R+ G +V ++VE + +LI P L+
Sbjct: 13 YYTWNGGGIMQFVSIDFETANEKRSSP----CAIGIAVVKGNEIVE--EYYSLINP--LT 64
Query: 64 AVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
+ ++R GIT V AP F E+ + S L+ + HN FD + I+ +
Sbjct: 65 HFSSFNTRIHGITAGDVADAPTFAELWPTLNSYLSNHLVVAHNA-SFDMSVIRHTLDQFN 123
Query: 124 KPAPVPVGMIDSLGVLTEKFGRRAG----NMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
P +D L T RR N K+ T+AS G+ + H +L+D R+ ++L
Sbjct: 124 LTYP----EMDYL--CTANISRRVWPELTNHKLNTVASRHGIQFEHHHALEDARVAAKIL 177
>gi|403529938|ref|YP_006664467.1| DNA polymerase III subunit epsilon [Bartonella quintana RM-11]
gi|403232010|gb|AFR25753.1| DNA polymerase III epsilon chain [Bartonella quintana RM-11]
Length = 235
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 72/164 (43%), Gaps = 8/164 (4%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
+ FD ETT + R ++E G + + R L + F + P+ + ++ ++ G+
Sbjct: 4 IIFDTETTGLDKEKDR--IIEIGCVEMVDRYLTG-KRFHVYLNPQGV-VISDEAVAIHGL 59
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
T E +++ F ++AD++ +NG HN FD + + KP ++D+
Sbjct: 60 TNERLKNEKSFSDIADELLEFINGATMVAHN-ASFDIGFLNAELGRVNKPLISVDNILDT 118
Query: 136 LGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
L + KF G + L FG+ HR ++ E+L
Sbjct: 119 LAMARRKF--PMGPNSLDVLCKRFGI-DNSHRVFHGALLDAEIL 159
>gi|409392387|ref|ZP_11243955.1| DNA polymerase III epsilon subunit [Gordonia rubripertincta NBRC
101908]
gi|403197725|dbj|GAB87189.1| DNA polymerase III epsilon subunit [Gordonia rubripertincta NBRC
101908]
Length = 608
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 80/197 (40%), Gaps = 29/197 (14%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+V DLETT A R + E GA+ + R + F+TL+ P + + G
Sbjct: 37 LVVVDLETTGSNPAHDR--ITEIGAVKI--RGGEVIGEFATLVDPG--RPIPPQIVTLTG 90
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
IT V AP E V G + HN RFD +++ + P
Sbjct: 91 ITTAMVTDAPRIESVLPAFLEFARGSILVAHNA-RFDMGFLRQNALRLHLDWPF------ 143
Query: 135 SLGVLTEKFGRR------AGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL-------- 179
SL + T RR A +K++ LA F + + HR+LDD R +EV
Sbjct: 144 SLSLCTVTMARRILPRDEAPTVKLSALADLFDVSVRPTHRALDDARATVEVFHRLLERVG 203
Query: 180 -KHCATVLFLESSLPNT 195
+ +TV L S LP T
Sbjct: 204 NQGISTVGELTSYLPRT 220
>gi|392554225|ref|ZP_10301362.1| hypothetical protein PundN2_02185 [Pseudoalteromonas undina NCIMB
2128]
Length = 718
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 15/156 (9%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+ETT + G R + E G + + +++ +++TLI P+ + ++ GI
Sbjct: 558 DIETTGGLKGGNR--ITEIGIVKIQQGNIID--TWTTLINPE--RPIPRFITKLTGINDA 611
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
V AP F ++ + L+G ++ HN+ FD IK+ E+G +P L
Sbjct: 612 MVSDAPIFSDIVSTLLDKLSGSIFVAHNV-NFDYGFIKKELEELGINFKMP-----KLCT 665
Query: 139 LTE--KFGRRAGNMKMATLASYFGLG-QQKHRSLDD 171
+ E K + + + L+++F L HR+LDD
Sbjct: 666 VVESRKAFKGLKSYSLGNLSTHFNLDLTNHHRALDD 701
>gi|337750008|ref|YP_004644170.1| protein PolC [Paenibacillus mucilaginosus KNP414]
gi|386725636|ref|YP_006191962.1| protein PolC [Paenibacillus mucilaginosus K02]
gi|336301197|gb|AEI44300.1| PolC [Paenibacillus mucilaginosus KNP414]
gi|384092761|gb|AFH64197.1| PolC [Paenibacillus mucilaginosus K02]
Length = 1436
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 71/160 (44%), Gaps = 10/160 (6%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
AE + FD+ETT + ++E + + K E++ FST + P + + +
Sbjct: 420 AEYIVFDIETTGLSVTSNK--IIEIAGVRMKEGK--EIDRFSTFVDPHE--RIPYNIQQL 473
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
IT E V AP EEV + + V HN RFD I+ +G P V +
Sbjct: 474 TNITDEMVRGAPTIEEVLPQFVEFIGDSVLVAHN-ARFDIGFIQANCKRLGLPE-VKNPV 531
Query: 133 IDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDD 171
+D+L L N ++ TLA F + + HR++DD
Sbjct: 532 LDTLE-LARLLMPTLKNHRLNTLADKFKVSLENHHRAIDD 570
>gi|407705995|ref|YP_006829580.1| glycosyl transferase group 1 [Bacillus thuringiensis MC28]
gi|407383680|gb|AFU14181.1| DNA polymerase III alpha subunit [Bacillus thuringiensis MC28]
Length = 318
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 12 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPSRITSLT 65
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 66 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGFPEP-KNKVI 123
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + C ++
Sbjct: 124 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCTSI 174
>gi|441164056|ref|ZP_20968400.1| DNA polymerase III subunit epsilon [Streptomyces rimosus subsp.
rimosus ATCC 10970]
gi|440616245|gb|ELQ79393.1| DNA polymerase III subunit epsilon [Streptomyces rimosus subsp.
rimosus ATCC 10970]
Length = 344
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 10/132 (7%)
Query: 51 ESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ + TL+ P +D V + G+T + + +AP F E+ ++ L GRV HN
Sbjct: 71 DHWYTLVNPQRDPGPVWIH-----GLTSDMLSTAPLFPEIVPELSRRLEGRVLVAHNA-M 124
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRS 168
FD + I +A APV + L+++ N K+ +LA+++G+ Q+ H +
Sbjct: 125 FDWSMIAREYARAEAEAPVRQRLCTI--ALSKELRLPLPNHKLESLAAHYGVKQEHAHHA 182
Query: 169 LDDVRMNLEVLK 180
LDD R+ E +
Sbjct: 183 LDDARVLAEAFR 194
>gi|227529135|ref|ZP_03959184.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
vaginalis ATCC 49540]
gi|227350979|gb|EEJ41270.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
vaginalis ATCC 49540]
Length = 960
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 9/119 (7%)
Query: 19 DLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITR 77
DLETT G R +++ G ++V +++ F T I P+ AV ++ GI
Sbjct: 29 DLETTGTSVNHGDR--IIQVGCVLVQDGEIIN--HFETKINPR--VAVPRHITQLTGIKN 82
Query: 78 EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSL 136
V +AP FE++A ++S+L+G ++ HN+ FD + G P+ + + ID++
Sbjct: 83 NDVRNAPLFEDIAGTLYSLLSGTIFVAHNV-NFDFPFLNAELERAGYPS-LSIKAIDTV 139
>gi|441505447|ref|ZP_20987431.1| DNA polymerase III epsilon subunit [Photobacterium sp. AK15]
gi|441426838|gb|ELR64316.1| DNA polymerase III epsilon subunit [Photobacterium sp. AK15]
Length = 243
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 19/179 (10%)
Query: 10 AGTAEIVFFDLETTV-----PRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSA 64
A I+ FD ETT P G R ++E GA+ + RKL SF IKP
Sbjct: 3 ATNERIIVFDTETTGMNMTGPHYEGHR--IIEIGAVEIINRKLTG-NSFHVYIKPD--RE 57
Query: 65 VALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAE--- 121
+ L++ GIT E ++ P + ++ ++ + G HN FD + F +
Sbjct: 58 IDLEAIDVHGITDEFLQDKPTYADIHEEFMEFIRGAELVAHNA-PFDIGFMDYEFRKLDP 116
Query: 122 -IGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
IGK + D+L + F + N+ + L S +G+ HR+L ++ E+L
Sbjct: 117 SIGKTEDF-CKVTDTLDMAKRLFPGKRNNLDV--LCSRYGI-DNSHRTLHGALLDAEIL 171
>gi|29839853|ref|NP_828959.1| DNA polymerase III subunit epsilon [Chlamydophila caviae GPIC]
gi|29834200|gb|AAP04837.1| DNA polymerase III, epsilon chain [Chlamydophila caviae GPIC]
Length = 249
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 34 VLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKI 93
++EF A+ K+++ S TLI P ++ +S R I+ ++ P EV KI
Sbjct: 26 IIEFAAMRFTFDKVID--SMETLINPD--RVISAESQRIHRISDAMLKDQPRIAEVFPKI 81
Query: 94 FSILN-GRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKM 152
S L G GH++ FD + + IG+ +ID+L L +++G N +
Sbjct: 82 KSFLKEGDYIVGHSVG-FDLQVLTQEAERIGESFLSKYYIIDTLR-LAKEYGDSPNN-SL 138
Query: 153 ATLASYFGLGQQ-KHRSLDDVRMNLEVLKH 181
LA +F + HR++ DV +N+ + KH
Sbjct: 139 EALAVHFNVPYDGNHRAMKDVEININIFKH 168
>gi|404259950|ref|ZP_10963252.1| DNA polymerase III subunit epsilon [Gordonia namibiensis NBRC
108229]
gi|403401533|dbj|GAC01662.1| DNA polymerase III subunit epsilon [Gordonia namibiensis NBRC
108229]
Length = 621
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 80/197 (40%), Gaps = 29/197 (14%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+V DLETT R + E GA+ + R + F+TL+ P A+ + G
Sbjct: 50 LVVVDLETTGSSPTDDR--ITEIGAVKI--RGGEVIGEFATLVDPG--RAIPPQIVTLTG 103
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
IT V AP E V G + HN RFD +++ + P
Sbjct: 104 ITTAMVTDAPRIESVLPAFLEFARGSILVAHNA-RFDMGFLRQNALRLHLDWPF------ 156
Query: 135 SLGVLTEKFGRR------AGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL-------- 179
SL + T RR A +K++ LA F + + HR+LDD R +EV
Sbjct: 157 SLSLCTVTMARRILPRDEAPTVKLSALAELFDVSVRPTHRALDDARATVEVFHRLLERVG 216
Query: 180 -KHCATVLFLESSLPNT 195
+ +TV L S LP T
Sbjct: 217 NQGISTVGELTSYLPRT 233
>gi|377830851|ref|ZP_09813842.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
mucosae LM1]
gi|377555299|gb|EHT16987.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
mucosae LM1]
Length = 947
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 119/283 (42%), Gaps = 52/283 (18%)
Query: 19 DLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITR 77
DLETT + G R +++ G ++V +++ F T I P+ + + + GIT
Sbjct: 16 DLETTGTSVKHGDR--IIQIGCVLVQAGQIIN--QFETKINPR--TKIPHSIEQLTGITN 69
Query: 78 EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLG 137
V AP F++VAD + S+L+ ++ HN+ FD + G + + + ID++
Sbjct: 70 SDVHDAPWFDDVADTLESLLSDTIFVAHNV-NFDFPFLNAELERAGHQS-LAIPAIDTV- 126
Query: 138 VLTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDD------------------------- 171
L + A + ++ L+SY + Q H + D
Sbjct: 127 TLAQILLPTAKSFRLRDLSSYLAIEHDQPHSAASDAEATAVLLIDLLKKVHQLPTLTLAS 186
Query: 172 -VRMNLEVLKHCATVLFLESSLPNTFNSNLQSSLTVTTRSRSNGKLPCREETSRKSPPIS 230
V+M L++ K A V E NL + L V SNG + KS P++
Sbjct: 187 LVKMKLQLPKQTADVFSQELEKRRHHPQNLSADLYV-----SNGLV------LHKSRPLA 235
Query: 231 --LGYQRSAVPYTRTSLGKMTESVKNLLCKSQGSQPLNTLLKH 271
+ + ++A P T+ + K+ L ++ S+ +N++ H
Sbjct: 236 TPMAHDKNAYPATKKAKEKLFGD--QLEFRATQSKMMNSIYNH 276
>gi|168187912|ref|ZP_02622547.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum C str. Eklund]
gi|169294244|gb|EDS76377.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum C str. Eklund]
Length = 1441
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 48/193 (24%), Positives = 89/193 (46%), Gaps = 12/193 (6%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V FDLETT + Q ++EFGA+ + +++ SFS + P+ + + + I
Sbjct: 429 VVFDLETT--GFSSQYDKIIEFGAVKIKNGNIID--SFSAFVNPE--MKIPYRITELTSI 482
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
T E V+ A ++V K V HN FD + I++ ++ V +D+
Sbjct: 483 TNEDVKDAETIDKVLPKFMKFAEDTVLVAHN-SNFDMSFIRKNCNDLNIECNYTV--MDT 539
Query: 136 LGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHCATVLF-LESSLP 193
+ + F K+ T+A + G+ + HR++DD + ++L HC +L +E +
Sbjct: 540 IPLAKFLFPELK-RYKLNTIAKHLGVSLENHHRAVDDAKATGDILVHCFKLLKEMEITSL 598
Query: 194 NTFNSNLQSSLTV 206
N N+ ++ V
Sbjct: 599 NDLNNKFLGNIDV 611
>gi|357008006|ref|ZP_09073005.1| PolC [Paenibacillus elgii B69]
Length = 1437
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 10/160 (6%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
AE V FD+ETT + ++E + + K E++ F+T I P + + +
Sbjct: 421 AEYVIFDIETTGLSVTSNK--IIELAGVRMKEGK--EIDRFATFIDPHE--RIPYNIQQL 474
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
IT + V+ APE EE+ K + V HN RFD I+ +G P V +
Sbjct: 475 TNITDDMVKGAPELEEMLPKFIEFVGDSVLVAHN-ARFDIGFIQANCKRLGLPE-VTNPV 532
Query: 133 IDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDD 171
+D+L + F N ++ TL+ F + HR++DD
Sbjct: 533 LDTLELARLLFPTLK-NHRLNTLSDKFKVSLDNHHRAIDD 571
>gi|417935354|ref|ZP_12578673.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus mitis bv. 2 str. F0392]
gi|340769847|gb|EGR92365.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus mitis bv. 2 str. F0392]
Length = 830
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 89/199 (44%), Gaps = 20/199 (10%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V DLE T G + +++ G +++ +++ ++T + P + +K G+
Sbjct: 10 VVVDLEAT---STGSKAKIIQVGIVVIEDGDIID--QYATDVNPHEPLDSHIKE--LTGL 62
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVP-VGMID 134
T + + +APEF +VA KIF ++ ++ HN+ +FD + E G P V ++
Sbjct: 63 TDQRLAAAPEFSQVARKIFELVKDGIFVAHNV-QFDANLLAEFLFFEGYELRTPRVDTVE 121
Query: 135 SLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHCATVLF------ 187
VL +F + + L G+ +Q H +L D + E+L + LF
Sbjct: 122 LAQVLYPQFEK----YNLGILCQELGIELEQAHTALSDAQATAELLLYMRQKLFELPKGL 177
Query: 188 LESSLPNTFNSNLQSSLTV 206
LES L N +S L +
Sbjct: 178 LESLLDLADNLLYESYLVI 196
>gi|229075504|ref|ZP_04208492.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-18]
gi|228707600|gb|EEL59785.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-18]
Length = 318
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 12 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPSRITSLT 65
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 66 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGFPEP-KNKVI 123
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + C ++
Sbjct: 124 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCTSI 174
>gi|312143668|ref|YP_003995114.1| DNA polymerase III subunit alpha [Halanaerobium hydrogeniformans]
gi|311904319|gb|ADQ14760.1| DNA polymerase III, alpha subunit [Halanaerobium hydrogeniformans]
Length = 1401
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 54/200 (27%), Positives = 87/200 (43%), Gaps = 23/200 (11%)
Query: 6 PSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAI-IVCPRKLVELESFSTLIKPKDLSA 64
P++ T E V FDLETT + ++E GA+ I K+ E E+F + K
Sbjct: 380 PAEIKQT-EFVVFDLETTGLNPSQHD--IIEIGAVKIKAGEKIAEFETFIDIDK-----N 431
Query: 65 VALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFA--EI 122
V K + GI + AP+ + ++ + V HN FD ++ A EI
Sbjct: 432 VPAKITEITGINTSMLTGAPKLKAAIERFIDFIGDGVLVAHNA-DFDYGFLRTALQKLEI 490
Query: 123 GKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKH 181
+ ++D+L L+ + + N K+ TLA YF + HR+L D E+LK
Sbjct: 491 NRKE---YTVLDTLA-LSRALIKDSKNYKLNTLAEYFSVELDDHHRALADADATAEILKK 546
Query: 182 CATVLFLESSLPNTFNSNLQ 201
++ + NSNL+
Sbjct: 547 LLAIIEKDD------NSNLK 560
>gi|385679948|ref|ZP_10053876.1| DNA polymerase III subunit epsilon [Amycolatopsis sp. ATCC 39116]
Length = 509
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 72/172 (41%), Gaps = 13/172 (7%)
Query: 9 AAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALK 68
A GT E D ETT Q ++E A+ V V L FSTL+ P V
Sbjct: 16 AVGT-EFTAIDFETT----GLQPGRIIEVAAVRVRADGTV-LGEFSTLVDPG--PGVDSG 67
Query: 69 SSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPV 128
+R GITR ++SAP ++A + + G V GHN+ F+ + IG P
Sbjct: 68 PARVHGITRAQLDSAPALGQIAGHLLDLCQGSVLVGHNL-AFEQGFLAAELERIGLRLPT 126
Query: 129 PVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDDVRMNLEVL 179
G+ N ++AT+A GLG H++ D R +VL
Sbjct: 127 LPGVCTLAAARAALR---LPNYRLATVAEALGLGGFPAHQAAPDARACAQVL 175
>gi|197284137|ref|YP_002150009.1| DNA polymerase III subunit epsilon [Proteus mirabilis HI4320]
gi|194681624|emb|CAR40653.1| DNA polymerase III, epsilon subunit [Proteus mirabilis HI4320]
Length = 252
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 13/170 (7%)
Query: 16 VFFDLETTVPRRAGQRFW---VLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
+ D ETT + G + ++E GA+ V R+L +F IKP+ L V ++
Sbjct: 9 IVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTG-RNFHVYIKPERL--VDPEAFEV 65
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVP--- 129
GI+ E +E P F E+AD+ + + G HN FD + F ++ + P+
Sbjct: 66 HGISDEFLEDCPSFAEIADEFLAYIRGAELIIHNA-SFDIGFMDYEFQKLNRDIPLTETF 124
Query: 130 VGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
+ DSL + E F + N+ L + + K R+L ++ E+L
Sbjct: 125 CQITDSLAMARELFPGKRNNLD--ALCDRYLIDNSK-RTLHGALLDAEIL 171
>gi|120436992|ref|YP_862678.1| exonuclease domain-containing protein [Gramella forsetii KT0803]
gi|117579142|emb|CAL67611.1| protein containing exonuclease domain [Gramella forsetii KT0803]
Length = 507
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 7/106 (6%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+ETT G R + E I+V K+++ +S+L+ P A+ L GI E
Sbjct: 10 DIETTGNGIKGNR--ITEICVIVVQNGKVID--EYSSLVNPS--QAIPLYIETLTGINDE 63
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGK 124
V +AP+F E+AD+I I ++ HN+ FD I+ FA + +
Sbjct: 64 MVFNAPQFSEIADEITKITKDCIFVAHNV-NFDYNIIRAEFASLDR 108
>gi|222824026|ref|YP_002575600.1| DNA polymerase III subunit epsilon [Campylobacter lari RM2100]
gi|222539248|gb|ACM64349.1| DNA polymerase III, epsilon subunit [Campylobacter lari RM2100]
Length = 254
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 36/176 (20%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+E+T ++GQ +LE GA+ + K E++ F + +K + ++ + GI+ +
Sbjct: 76 DIESTGGIKSGQ---ILEIGAVKIQNYK--EIDRFESFVK---VESIPENITELTGISLD 127
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
VE+AP + V + L ++ HN+ RFD I +A E + GV
Sbjct: 128 MVENAPSLKTVLNNFKLFLKDSIFVAHNV-RFDYHFISKAMYE------------NDFGV 174
Query: 139 LTEKFGRRAGNMKMA------------TLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
L RR + +A L + + + HR+L D E+LK+C
Sbjct: 175 L---LNRRLCTIDLAKKCIESPKYGLDALKEFLCIESKHHRALSDALAASEILKYC 227
>gi|295424856|ref|ZP_06817571.1| ATP-dependent DNA helicase [Lactobacillus amylolyticus DSM 11664]
gi|295065422|gb|EFG56315.1| ATP-dependent DNA helicase [Lactobacillus amylolyticus DSM 11664]
Length = 934
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT +R +++FG I+ K+V+ SF +I P + L I E
Sbjct: 14 DLETTGTQRENNNH-IIQFGCAIIKNMKVVKTYSF--MINPH--REIPLSVQNLTRIHNE 68
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPA 126
VE AP+F A KI +IL V+ HN+ FD + + G PA
Sbjct: 69 DVEKAPDFSHYAKKIIAILEDTVFVAHNV-NFDLPFLNYELMQHGYPA 115
>gi|229104149|ref|ZP_04234821.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-28]
gi|228679166|gb|EEL33371.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-28]
Length = 315
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPSRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGFPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + C ++
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCTSI 171
>gi|256424475|ref|YP_003125128.1| DNA polymerase III subunit epsilon [Chitinophaga pinensis DSM 2588]
gi|256039383|gb|ACU62927.1| DNA polymerase III, epsilon subunit [Chitinophaga pinensis DSM
2588]
Length = 456
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+ETT + + E I R +V+ + TLI P ++S GIT E
Sbjct: 6 DIETTGGHASAN--GITEIAIYIYDGRNIVQ--QYETLINPGVPIPRYIQS--LTGITDE 59
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
V +AP F+EVA IF++L+ +++ HN+ FD + I+ A+ G
Sbjct: 60 MVANAPAFDEVAGDIFALLHDKIFVAHNV-NFDYSFIQYHLAQAG 103
>gi|168485945|ref|ZP_02710453.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
CDC1087-00]
gi|418184814|ref|ZP_12821361.1| exonuclease family protein [Streptococcus pneumoniae GA47283]
gi|418193620|ref|ZP_12830112.1| exonuclease family protein [Streptococcus pneumoniae GA47439]
gi|419510616|ref|ZP_14050260.1| exonuclease family protein [Streptococcus pneumoniae NP141]
gi|419530192|ref|ZP_14069722.1| exonuclease family protein [Streptococcus pneumoniae GA40028]
gi|421212917|ref|ZP_15669878.1| exonuclease family protein [Streptococcus pneumoniae 2070108]
gi|183571068|gb|EDT91596.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
CDC1087-00]
gi|353851350|gb|EHE31346.1| exonuclease family protein [Streptococcus pneumoniae GA47283]
gi|353859600|gb|EHE39550.1| exonuclease family protein [Streptococcus pneumoniae GA47439]
gi|379574191|gb|EHZ39135.1| exonuclease family protein [Streptococcus pneumoniae GA40028]
gi|379633809|gb|EHZ98378.1| exonuclease family protein [Streptococcus pneumoniae NP141]
gi|395580504|gb|EJG40985.1| exonuclease family protein [Streptococcus pneumoniae 2070108]
Length = 196
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 26/161 (16%)
Query: 49 ELESFSTLIKPKDLSAVALKS--SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHN 106
E++++ + + ++V+LKS + GIT E ++ AP E+V ++ + + G+N
Sbjct: 36 EIDAYDSYVH----TSVSLKSFINGLTGITAETLKDAPPVEKVLEEFQEFVGSLLMIGYN 91
Query: 107 IRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRA------GNMKMATLASYFG 160
+ D + E + + V + E F RR+ N+K+ T+AS+ G
Sbjct: 92 AAKSDLPILAEHGLDYSQQYKVDL--------YDEAFERRSSDLHGIANLKLQTVASFLG 143
Query: 161 LGQQKHRSLDDVRMNLEVLK------HCATVLFLESSLPNT 195
Q H SL+D RM V + +L ESSL N
Sbjct: 144 FQGQSHNSLEDARMTARVYESFLESDQARELLETESSLSNN 184
>gi|322373090|ref|ZP_08047626.1| putative DnaQ family exonuclease/DinG family helicase
[Streptococcus sp. C150]
gi|321278132|gb|EFX55201.1| putative DnaQ family exonuclease/DinG family helicase
[Streptococcus sp. C150]
Length = 828
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 90/201 (44%), Gaps = 28/201 (13%)
Query: 11 GTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK---DLSAVAL 67
T + DLE T +++ G +I+ ++++ F++ + P D + L
Sbjct: 5 NTNKYAIVDLEATFASSMAS---IIQVGIVIMQNGQVID--EFASDVNPHQKLDDHIIHL 59
Query: 68 KSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAP 127
GIT + + AP+F E+A KIF ++ ++ HN+ +FD + EA G
Sbjct: 60 T-----GITDQQLAQAPDFSEIARKIFDLIEDCIFVAHNV-KFDANLLSEALFMEGYELR 113
Query: 128 VPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHCATVL 186
P +D++ L + F + K++ L+ L Q H +++D R ++L H +
Sbjct: 114 TP--RVDTVE-LAQVFYPTLEHYKLSHLSKVLNLDLAQAHTAIEDARATGQLLFHLMDKI 170
Query: 187 FLESSLPN-------TFNSNL 200
+SLP TF+ NL
Sbjct: 171 ---ASLPRQTIDLLLTFSDNL 188
>gi|311068754|ref|YP_003973677.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus atrophaeus 1942]
gi|419820606|ref|ZP_14344215.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus atrophaeus C89]
gi|310869271|gb|ADP32746.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus atrophaeus 1942]
gi|388475080|gb|EIM11794.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus atrophaeus C89]
Length = 930
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 10/115 (8%)
Query: 15 IVFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
V D+ETT P++ + +++ A+++ ++ E FS I P ++ +
Sbjct: 6 FVVIDVETTGNSPKKGDK---IIQIAAVVIENGQITE--RFSKYINPN--KSIPFFIEQL 58
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAP 127
GIT VE+ FE VA+++F +L+G + HNI FD +K E G P
Sbjct: 59 TGITNSMVENEQPFEAVAEEVFQLLDGAYFVAHNI-HFDLGFVKYELNEAGFRLP 112
>gi|425067022|ref|ZP_18470138.1| DNA polymerase III subunit epsilon [Proteus mirabilis WGLW6]
gi|425073540|ref|ZP_18476646.1| DNA polymerase III subunit epsilon [Proteus mirabilis WGLW4]
gi|404595225|gb|EKA95776.1| DNA polymerase III subunit epsilon [Proteus mirabilis WGLW4]
gi|404601693|gb|EKB02085.1| DNA polymerase III subunit epsilon [Proteus mirabilis WGLW6]
Length = 252
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 13/170 (7%)
Query: 16 VFFDLETTVPRRAGQRFW---VLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
+ D ETT + G + ++E GA+ V R+L +F IKP+ L V ++
Sbjct: 9 IVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTG-RNFHVYIKPERL--VDPEAFEV 65
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVP--- 129
GI+ E +E P F E+AD+ + + G HN FD + F ++ + P+
Sbjct: 66 HGISDEFLEDCPSFAEIADEFLAYIRGAELIIHNA-SFDIGFMDYEFQKLNRDIPLTETF 124
Query: 130 VGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
+ DSL + E F + N+ L + + K R+L ++ E+L
Sbjct: 125 CQITDSLAMARELFPGKRNNLD--ALCDRYLIDNSK-RTLHGALLDAEIL 171
>gi|395783697|ref|ZP_10463546.1| DNA polymerase III, epsilon subunit [Bartonella melophagi K-2C]
gi|395425819|gb|EJF91979.1| DNA polymerase III, epsilon subunit [Bartonella melophagi K-2C]
Length = 234
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 5/128 (3%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
+ FD ETT + R ++E G + + R L F + P+ + + + G+
Sbjct: 4 IIFDTETTGLDKDSDR--IIEIGCVEMVDRYLTR-RQFHVYLNPQGV-IIPDEVVAIHGL 59
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
T E +++ +FE++AD+ ++G HN FD + + I KP +ID+
Sbjct: 60 TNERLKNEKKFEDIADEFLEFIDGATMVAHN-ASFDISFLNAELGRINKPLISVDNVIDT 118
Query: 136 LGVLTEKF 143
L + +KF
Sbjct: 119 LAIARQKF 126
>gi|227357997|ref|ZP_03842339.1| DNA polymerase III, epsilon subunit [Proteus mirabilis ATCC 29906]
gi|227161732|gb|EEI46764.1| DNA polymerase III, epsilon subunit [Proteus mirabilis ATCC 29906]
Length = 252
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 13/170 (7%)
Query: 16 VFFDLETTVPRRAGQRFW---VLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
+ D ETT + G + ++E GA+ V R+L +F IKP+ L V ++
Sbjct: 9 IVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTG-RNFHVYIKPERL--VDPEAFEV 65
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVP--- 129
GI+ E +E P F E+AD+ + + G HN FD + F ++ + P+
Sbjct: 66 HGISDEFLEDCPSFAEIADEFLAYIRGAELIIHNA-SFDIGFMDYEFQKLNRDIPLTETF 124
Query: 130 VGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
+ DSL + E F + N+ L + + K R+L ++ E+L
Sbjct: 125 CQITDSLAMARELFPGKRNNLD--ALCDRYLIDNSK-RTLHGALLDAEIL 171
>gi|402838038|ref|ZP_10886553.1| DNA polymerase III, alpha subunit, Gram-positive type
[Eubacteriaceae bacterium OBRC8]
gi|402274469|gb|EJU23653.1| DNA polymerase III, alpha subunit, Gram-positive type
[Eubacteriaceae bacterium OBRC8]
Length = 1402
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 49/159 (30%), Positives = 71/159 (44%), Gaps = 11/159 (6%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
E V FD+ETT + + + E GA+ + ++V +FS LI PK + K +
Sbjct: 387 EYVVFDIETT--GFSNKNDAITEIGAVKIKNCEIVG--TFSQLINPK--RPIPEKIQKLT 440
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT E V P EEV +G V HN FD I+E E + I
Sbjct: 441 GITDELVADKPFIEEVLPNFLEFCSGSVLVAHN-SDFDTGFIREKSFE--QKLDYDFDAI 497
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDD 171
D+L VL+ N K+ T+A + + HR++DD
Sbjct: 498 DTL-VLSRLIMTELKNHKLNTIAKELDISLENHHRAVDD 535
>gi|363889343|ref|ZP_09316706.1| DNA polymerase III, alpha subunit, Gram-positive type
[Eubacteriaceae bacterium CM5]
gi|361966766|gb|EHL19653.1| DNA polymerase III, alpha subunit, Gram-positive type
[Eubacteriaceae bacterium CM5]
Length = 1402
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 49/159 (30%), Positives = 71/159 (44%), Gaps = 11/159 (6%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
E V FD+ETT + + + E GA+ + ++V +FS LI PK + K +
Sbjct: 387 EYVVFDIETT--GFSNKNDAITEIGAVKIKNCEIVG--TFSQLINPK--RPIPEKIQKLT 440
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT E V P EEV +G V HN FD I+E E + I
Sbjct: 441 GITDELVADKPFIEEVLPNFLEFCSGSVLVAHN-SDFDTGFIREKSFE--QKLDYDFDAI 497
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDD 171
D+L VL+ N K+ T+A + + HR++DD
Sbjct: 498 DTL-VLSRLIMTELKNHKLNTIAKELDISLENHHRAVDD 535
>gi|299142830|ref|ZP_07035958.1| exonuclease [Prevotella oris C735]
gi|298575698|gb|EFI47576.1| exonuclease [Prevotella oris C735]
Length = 284
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 23/128 (17%)
Query: 18 FDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELES------FSTLIKP-KDLSAVALKSS 70
D+ET P R C LV +E+ F +LIKP D V ++
Sbjct: 9 IDIETMTPERTS------------ACALGLVRVENDVIVQKFYSLIKPIPDDRTVT--NT 54
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
GIT E VE+AP F+E+ I ++G+V A HN FD +K+ A G P+
Sbjct: 55 HVHGITPEMVENAPTFQELWPTIEHYISGQVLAAHN-TSFDLDVLKKVSAHYGITIPI-T 112
Query: 131 GMIDSLGV 138
G++D+ +
Sbjct: 113 GVVDTFSL 120
>gi|406929169|gb|EKD64827.1| hypothetical protein ACD_50C00290G0004 [uncultured bacterium]
Length = 463
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 19/166 (11%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+I F D+ETT R ++E G + V K+V F +LI + + +
Sbjct: 4 DISFLDIETTGINPQMDR--IIEIGIVRVQNDKIVG--KFDSLINSQ--TGIPPFIKNLT 57
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GI + +E+AP F EV D+I IL+ + HN RFD +K F +GK
Sbjct: 58 GIDDKDIENAPSFYEVGDEISQILSDSILVAHN-ARFDYGFLKSEFKRLGKT-------F 109
Query: 134 DSLGVLTEKFGRRAG-NMKMATLASY---FGLG-QQKHRSLDDVRM 174
+ + K R+ N+ L S FG+ +++HR+ DD ++
Sbjct: 110 STKHFCSIKLARQLFPNLTYYNLDSIIRNFGIECKRRHRAFDDAKV 155
>gi|111018828|ref|YP_701800.1| DNA polymerase III [Rhodococcus jostii RHA1]
gi|110818358|gb|ABG93642.1| probable DNA polymerase III [Rhodococcus jostii RHA1]
Length = 649
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 78/172 (45%), Gaps = 13/172 (7%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK-DLSAVALKSSRCDG 74
V D+ET+ R + R VL A+ + VE E TL+ P D V + +
Sbjct: 72 VVVDVETSGLRSSTHR--VLSVAALALREDGSVERE-LVTLLNPGCDPGPVHIHN----- 123
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
+T + + AP FEEVA+ + +L+GR HN FD + G P +
Sbjct: 124 LTPQRLAGAPRFEEVANDLLELLDGRTLVAHNA-SFDYGFLDAEVRRAGMTMPTRQRLCT 182
Query: 135 SLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLKHCATV 185
L+ + N K++TLA+++ + Q + H + DD + EV H A++
Sbjct: 183 L--ALSRRLEIDVPNHKLSTLAAHWKVRQNRAHDAYDDALVLTEVFAHSASL 232
>gi|337745894|ref|YP_004640056.1| DNA polymerase III subunit epsilon [Paenibacillus mucilaginosus
KNP414]
gi|379719851|ref|YP_005311982.1| DNA polymerase III subunit epsilon [Paenibacillus mucilaginosus
3016]
gi|386722448|ref|YP_006188774.1| hypothetical protein B2K_09785 [Paenibacillus mucilaginosus K02]
gi|336297083|gb|AEI40186.1| DNA polymerase III, epsilon subunit [Paenibacillus mucilaginosus
KNP414]
gi|378568523|gb|AFC28833.1| DNA polymerase III subunit epsilon [Paenibacillus mucilaginosus
3016]
gi|384089573|gb|AFH61009.1| hypothetical protein B2K_09785 [Paenibacillus mucilaginosus K02]
Length = 245
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 12 TAEIVFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKS 69
T E+V FDLETT P + ++ FGA+ V R L E ++F +L+ PK A+ +
Sbjct: 57 TVELVVFDLETTGFSPYNGDE---IISFGAVTVTGRTLSEKDTFYSLVNPK--RAIPREI 111
Query: 70 SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGH 105
GIT E V AP+ + +V H
Sbjct: 112 EELTGITNEMVADAPDLLHALRGFLEFVQQKVLVAH 147
>gi|345017707|ref|YP_004820060.1| DNA polymerase III polC-type [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033050|gb|AEM78776.1| DNA polymerase III polC-type [Thermoanaerobacter wiegelii Rt8.B1]
Length = 1407
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 15/176 (8%)
Query: 7 SQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVA 66
++A E FD+ETT ++E GA+ + K+++ +F T + PK +
Sbjct: 386 TEATLEDEFTVFDIETTGLSNINDE--IIEIGAVKIKEGKIID--TFETFVNPK----IP 437
Query: 67 LKS--SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGK 124
+ S ++ GI V+ AP EE+ + V HN FD + IK +
Sbjct: 438 ISSFITKLTGIDESIVKDAPSIEEILPNFLEFSSNSVLVAHNA-NFDVSFIKSKAKKFN- 495
Query: 125 PAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
V ++D+L L+ + N K+ TL+ + + + HR++DD R E+
Sbjct: 496 -LNVNNAVLDTLE-LSRHLYKDLKNYKLDTLSEHLQVKLEHHHRAVDDARATAEIF 549
>gi|388467218|ref|ZP_10141428.1| DNA polymerase III, epsilon subunit [Pseudomonas synxantha BG33R]
gi|388010798|gb|EIK71985.1| DNA polymerase III, epsilon subunit [Pseudomonas synxantha BG33R]
Length = 248
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 101/249 (40%), Gaps = 34/249 (13%)
Query: 16 VFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK---DLSAVALKSSR 71
V D ETT +P G R ++E G + + R+L F ++P D A+ +
Sbjct: 6 VVLDTETTGMPVTDGHR--IIEIGCVELMGRRLTG-RHFHVYLQPDRDSDEGAIGVH--- 59
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GIT E ++ P F EVAD+ F +NG HN FD I FA +G+ +
Sbjct: 60 --GITDEFLKGKPRFAEVADEFFEFINGAQLIIHNA-AFDIGFINNEFALMGQTDRADIS 116
Query: 132 ----MIDSLGVLTEKF-GRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVL 186
++D+L + E+ G+R + L +G+ R L ++ E+L +
Sbjct: 117 QHCTILDTLMMARERHPGQRN---SLDALCKRYGV-DNSGRELHGALLDSEILADVYLTM 172
Query: 187 FLESSLPNTFNSNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQRSAVPYTRTSLG 246
+ Q+SL++ + S+G +R S L R P R S
Sbjct: 173 -----------TGGQTSLSLAGNA-SDGSGSAEGSGNRPSEIRRLPADRKPTPIIRASEQ 220
Query: 247 KMTESVKNL 255
+ E V L
Sbjct: 221 DLAEHVARL 229
>gi|387929510|ref|ZP_10132187.1| ATP-dependent DNA helicase/DNA polymerase III subunit epsilon
[Bacillus methanolicus PB1]
gi|387586328|gb|EIJ78652.1| ATP-dependent DNA helicase/DNA polymerase III subunit epsilon
[Bacillus methanolicus PB1]
Length = 936
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 10/107 (9%)
Query: 19 DLET--TVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGIT 76
DLET P+R G R +++F A+++ K++E +S+ I P+ + GI
Sbjct: 10 DLETIGNAPKR-GDR--IIQFAAVVIENGKIIE--QYSSFINPE--QQIPPFIEELTGIN 62
Query: 77 REAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
E V+ AP F E+A KI ++L+ + HN+ FD + ++E G
Sbjct: 63 DEMVKDAPLFSEIAPKILTMLDDAYFVAHNV-LFDLSFLQEELIHAG 108
>gi|149196822|ref|ZP_01873875.1| exonuclease [Lentisphaera araneosa HTCC2155]
gi|149139932|gb|EDM28332.1| exonuclease [Lentisphaera araneosa HTCC2155]
Length = 261
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
IVFFDLETT R ++E I V P ++++ + P+ ++ ++S G
Sbjct: 9 IVFFDLETTGLNPTEDR--IIEICCIKVHPDGKRDIKT--RRVNPE--KPISSEASEITG 62
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
IT E V+ P F+++A I+ G +G+NI RFD + E F G
Sbjct: 63 ITDEDVKDEPTFKQMAKGIYKFFEGCDISGYNIMRFDLRVLTEEFKRAG 111
>gi|194397817|ref|YP_002037629.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae G54]
gi|225861122|ref|YP_002742631.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
Taiwan19F-14]
gi|298231026|ref|ZP_06964707.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae str.
Canada MDR_19F]
gi|298253983|ref|ZP_06977569.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae str.
Canada MDR_19A]
gi|298502997|ref|YP_003724937.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
TCH8431/19A]
gi|387788336|ref|YP_006253404.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae ST556]
gi|417312563|ref|ZP_12099275.1| exonuclease family protein [Streptococcus pneumoniae GA04375]
gi|418082915|ref|ZP_12720116.1| exonuclease family protein [Streptococcus pneumoniae GA44288]
gi|418085058|ref|ZP_12722242.1| exonuclease family protein [Streptococcus pneumoniae GA47281]
gi|418093820|ref|ZP_12730949.1| exonuclease family protein [Streptococcus pneumoniae GA49138]
gi|418100818|ref|ZP_12737904.1| exonuclease family protein [Streptococcus pneumoniae 7286-06]
gi|418118718|ref|ZP_12755675.1| exonuclease family protein [Streptococcus pneumoniae GA18523]
gi|418121060|ref|ZP_12758006.1| exonuclease family protein [Streptococcus pneumoniae GA44194]
gi|418141578|ref|ZP_12778391.1| exonuclease family protein [Streptococcus pneumoniae GA13455]
gi|418150458|ref|ZP_12787209.1| exonuclease family protein [Streptococcus pneumoniae GA14798]
gi|418152726|ref|ZP_12789466.1| exonuclease family protein [Streptococcus pneumoniae GA16121]
gi|418157538|ref|ZP_12794254.1| exonuclease family protein [Streptococcus pneumoniae GA16833]
gi|418164852|ref|ZP_12801522.1| exonuclease family protein [Streptococcus pneumoniae GA17371]
gi|418171410|ref|ZP_12808034.1| exonuclease family protein [Streptococcus pneumoniae GA19451]
gi|418196023|ref|ZP_12832502.1| exonuclease family protein [Streptococcus pneumoniae GA47688]
gi|418197817|ref|ZP_12834280.1| exonuclease family protein [Streptococcus pneumoniae GA47778]
gi|418223478|ref|ZP_12850118.1| exonuclease family protein [Streptococcus pneumoniae 5185-06]
gi|418227572|ref|ZP_12854191.1| exonuclease family protein [Streptococcus pneumoniae 3063-00]
gi|419425014|ref|ZP_13965213.1| exonuclease family protein [Streptococcus pneumoniae 7533-05]
gi|419427341|ref|ZP_13967524.1| exonuclease family protein [Streptococcus pneumoniae 5652-06]
gi|419429148|ref|ZP_13969315.1| exonuclease family protein [Streptococcus pneumoniae GA11856]
gi|419435857|ref|ZP_13975950.1| exonuclease family protein [Streptococcus pneumoniae 8190-05]
gi|419438089|ref|ZP_13978159.1| exonuclease family protein [Streptococcus pneumoniae GA13499]
gi|419444792|ref|ZP_13984807.1| exonuclease family protein [Streptococcus pneumoniae GA19923]
gi|419446937|ref|ZP_13986942.1| exonuclease family protein [Streptococcus pneumoniae 7879-04]
gi|419448630|ref|ZP_13988627.1| exonuclease family protein [Streptococcus pneumoniae 4075-00]
gi|419451329|ref|ZP_13991315.1| exonuclease family protein [Streptococcus pneumoniae EU-NP02]
gi|419490908|ref|ZP_14030648.1| exonuclease family protein [Streptococcus pneumoniae GA47179]
gi|419501719|ref|ZP_14041405.1| exonuclease family protein [Streptococcus pneumoniae GA47628]
gi|419518782|ref|ZP_14058389.1| exonuclease family protein [Streptococcus pneumoniae GA08825]
gi|419527617|ref|ZP_14067160.1| exonuclease family protein [Streptococcus pneumoniae GA17719]
gi|419532218|ref|ZP_14071735.1| exonuclease family protein [Streptococcus pneumoniae GA47794]
gi|421274890|ref|ZP_15725722.1| exonuclease family protein [Streptococcus pneumoniae GA52612]
gi|421287707|ref|ZP_15738472.1| exonuclease [Streptococcus pneumoniae GA58771]
gi|194357484|gb|ACF55932.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae G54]
gi|225727595|gb|ACO23446.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
Taiwan19F-14]
gi|298238592|gb|ADI69723.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
TCH8431/19A]
gi|327389271|gb|EGE87616.1| exonuclease family protein [Streptococcus pneumoniae GA04375]
gi|353756828|gb|EHD37427.1| exonuclease family protein [Streptococcus pneumoniae GA44288]
gi|353758753|gb|EHD39341.1| exonuclease family protein [Streptococcus pneumoniae GA47281]
gi|353765696|gb|EHD46238.1| exonuclease family protein [Streptococcus pneumoniae GA49138]
gi|353772754|gb|EHD53259.1| exonuclease family protein [Streptococcus pneumoniae 7286-06]
gi|353790670|gb|EHD71051.1| exonuclease family protein [Streptococcus pneumoniae GA18523]
gi|353793887|gb|EHD74246.1| exonuclease family protein [Streptococcus pneumoniae GA44194]
gi|353805829|gb|EHD86103.1| exonuclease family protein [Streptococcus pneumoniae GA13455]
gi|353815966|gb|EHD96178.1| exonuclease family protein [Streptococcus pneumoniae GA14798]
gi|353819371|gb|EHD99569.1| exonuclease family protein [Streptococcus pneumoniae GA16121]
gi|353823986|gb|EHE04160.1| exonuclease family protein [Streptococcus pneumoniae GA16833]
gi|353829713|gb|EHE09844.1| exonuclease family protein [Streptococcus pneumoniae GA17371]
gi|353835147|gb|EHE15241.1| exonuclease family protein [Streptococcus pneumoniae GA19451]
gi|353861474|gb|EHE41411.1| exonuclease family protein [Streptococcus pneumoniae GA47688]
gi|353863973|gb|EHE43892.1| exonuclease family protein [Streptococcus pneumoniae GA47778]
gi|353878276|gb|EHE58106.1| exonuclease family protein [Streptococcus pneumoniae 5185-06]
gi|353883173|gb|EHE62982.1| exonuclease family protein [Streptococcus pneumoniae 3063-00]
gi|379138078|gb|AFC94869.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae ST556]
gi|379538094|gb|EHZ03275.1| exonuclease family protein [Streptococcus pneumoniae GA13499]
gi|379551096|gb|EHZ16191.1| exonuclease family protein [Streptococcus pneumoniae GA11856]
gi|379565770|gb|EHZ30761.1| exonuclease family protein [Streptococcus pneumoniae GA17719]
gi|379572485|gb|EHZ37442.1| exonuclease family protein [Streptococcus pneumoniae GA19923]
gi|379594487|gb|EHZ59297.1| exonuclease family protein [Streptococcus pneumoniae GA47179]
gi|379602080|gb|EHZ66852.1| exonuclease family protein [Streptococcus pneumoniae GA47628]
gi|379606388|gb|EHZ71136.1| exonuclease family protein [Streptococcus pneumoniae GA47794]
gi|379614477|gb|EHZ79187.1| exonuclease family protein [Streptococcus pneumoniae 7879-04]
gi|379615992|gb|EHZ80693.1| exonuclease family protein [Streptococcus pneumoniae 8190-05]
gi|379618794|gb|EHZ83469.1| exonuclease family protein [Streptococcus pneumoniae 5652-06]
gi|379620343|gb|EHZ85002.1| exonuclease family protein [Streptococcus pneumoniae 7533-05]
gi|379623034|gb|EHZ87668.1| exonuclease family protein [Streptococcus pneumoniae EU-NP02]
gi|379623688|gb|EHZ88321.1| exonuclease family protein [Streptococcus pneumoniae 4075-00]
gi|379641761|gb|EIA06296.1| exonuclease family protein [Streptococcus pneumoniae GA08825]
gi|395875618|gb|EJG86699.1| exonuclease family protein [Streptococcus pneumoniae GA52612]
gi|395888319|gb|EJG99331.1| exonuclease [Streptococcus pneumoniae GA58771]
Length = 196
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 31/196 (15%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKS--SR 71
+ + FDLE + GQ+ + V R E++++ + + ++V LKS +
Sbjct: 6 DYIAFDLEFN--QHEGQKHLI---QVSAVRFRDGREIDAYDSYVH----TSVPLKSFING 56
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GIT E ++ AP E+V ++ + + G+N + D + E + + V +
Sbjct: 57 LTGITAETLKDAPPVEKVLEEFQEFVGSLLMIGYNAAKSDLPILAEYGLDYSQQYKVDL- 115
Query: 132 MIDSLGVLTEKFGRRA------GNMKMATLASYFGLGQQKHRSLDDVRMNLEVLK----- 180
E F RR+ N+K+ T+AS+ G Q H SL+D RM V +
Sbjct: 116 -------YDEAFERRSSDLHGIANLKLQTVASFLGFQGQSHNSLEDARMTARVYESFLES 168
Query: 181 -HCATVLFLESSLPNT 195
+L ESSL N
Sbjct: 169 DQARELLETESSLSNN 184
>gi|430808473|ref|ZP_19435588.1| DNA polymerase III, epsilon subunit [Cupriavidus sp. HMR-1]
gi|429499167|gb|EKZ97615.1| DNA polymerase III, epsilon subunit [Cupriavidus sp. HMR-1]
Length = 530
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 85/196 (43%), Gaps = 32/196 (16%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
IVF DLETT QR + E G + V P + E + TL+ P L+++ G
Sbjct: 35 IVFVDLETTGA--DAQRDRITEIGVVEVGPDGIQE---WDTLVDP--LTSIPPFVQGLTG 87
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV---- 130
IT + V P F +A+ + L GR++ HN RFD +K F G V
Sbjct: 88 ITDDMVRGQPTFALIAEALAEKLQGRLFVAHNA-RFDYGFLKNEFRRAGVTFRADVLCTL 146
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQ-KHRSLDDVRM------------NLE 177
+ SL E+ G + L + FGL + +HR+L D + +++
Sbjct: 147 RLSRSLFPSVERHG-------LDALIARFGLTPKGRHRALADAELLWQFWQKIHEIYSVD 199
Query: 178 VLKHCATVLFLESSLP 193
+++ T L +SLP
Sbjct: 200 LVESAVTSLVKHASLP 215
>gi|90414055|ref|ZP_01222038.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK]
gi|90324850|gb|EAS41378.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK]
Length = 246
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 15/180 (8%)
Query: 7 SQAAGTAEIVFFDLETTVPRRAGQRF---WVLEFGAIIVCPRKLVELESFSTLIKPKDLS 63
+ A I+ D ETT G + ++E GA+ + RKL SF IKP
Sbjct: 4 TMKATNQRIIVLDTETTGMNMTGPHYEGHCIIEIGAVEIINRKLTG-NSFHVYIKPD--R 60
Query: 64 AVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAE-- 121
+ +++ GIT E + P ++EV D+ + G HN FD + F +
Sbjct: 61 TIEVEAIGVHGITDEFLIGKPVYKEVHDEFLEFIKGAELVAHN-APFDVGFMDYEFRKLN 119
Query: 122 --IGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
IGK + D+L + + F + N+ + L S +G+ HR+L ++ E+L
Sbjct: 120 PNIGKTEDF-CKVTDTLAMAKKIFPGKRNNLDI--LCSRYGI-DNSHRTLHGALLDAEIL 175
>gi|313674131|ref|YP_004052127.1| DNA polymerase iii, epsilon subunit [Marivirga tractuosa DSM 4126]
gi|312940829|gb|ADR20019.1| DNA polymerase III, epsilon subunit [Marivirga tractuosa DSM 4126]
Length = 465
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+ETT A R + E I+ K+V+ + TLI P+ + + S GI +
Sbjct: 6 DIETTGGYAARNR--ICEIAIILHDGEKVVK--EYQTLINPE--RHIPPQLSAIHGINDQ 59
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
VE AP+F E A I +L G ++ H++ FD + +K AF ++G
Sbjct: 60 MVEDAPKFYEEAKTIHELLEGNIFVAHSV-NFDYSFVKAAFQDLG 103
>gi|111222131|ref|YP_712925.1| DNA-directed DNA polymerase [Frankia alni ACN14a]
gi|111149663|emb|CAJ61355.1| putative DNA-directed DNA polymerase [Frankia alni ACN14a]
Length = 238
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 81/197 (41%), Gaps = 28/197 (14%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
A +V DLE T + Q +LE + + + ES++T+I P +A +
Sbjct: 32 AALVAIDLEGTGAQDGDQED-ILEIALVPLHAGAMQIAESYTTVINPG--RRIAARPWLS 88
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
G+T + + +P V ++ + LNGR+ GHN+ + P P G+
Sbjct: 89 PGLTNQVLAGSPPLGRVEPELAARLNGRILVGHNV------GVDWRLLHRRCPTVTPAGL 142
Query: 133 IDSLGVLTEKFGRRAGNMKMATLASYFGL---------GQQKHRSLDD---VRMNLEVLK 180
+D+L L G R GN + TL L G Q HR+L D + L L
Sbjct: 143 LDTL-RLARHLGVRTGN-PLTTLLDRHDLTRQVTELAAGSQPHRALWDAIGAGLLLATLT 200
Query: 181 HCATVLFLESSLPNTFN 197
H +SS P T +
Sbjct: 201 HQ-----FDSSRPATLD 212
>gi|62184729|ref|YP_219514.1| DNA polymerase III subunit epsilon [Chlamydophila abortus S26/3]
gi|424824778|ref|ZP_18249765.1| DNA polymerase III subunit epsilon chain [Chlamydophila abortus
LLG]
gi|62147796|emb|CAH63542.1| putative DNA polymerase III epsilon chain [Chlamydophila abortus
S26/3]
gi|333409877|gb|EGK68864.1| DNA polymerase III subunit epsilon chain [Chlamydophila abortus
LLG]
Length = 249
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 9/150 (6%)
Query: 34 VLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKI 93
++EF AI +++ S TLI P ++ +S R I+ ++ P EV KI
Sbjct: 26 IIEFAAIRFTFDSVID--SMETLINPD--RVISAESQRIHHISDAMLKDQPRIAEVFPKI 81
Query: 94 FSILN-GRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKM 152
S L G GH++ FD + + IG+ +ID+L L +++G N +
Sbjct: 82 KSFLKEGDYIVGHSVG-FDLQVLSQEAERIGETFLSKYYIIDTLR-LAKEYGDSPNN-SL 138
Query: 153 ATLASYFGLGQQ-KHRSLDDVRMNLEVLKH 181
LA +F + HR++ DV +N+ + KH
Sbjct: 139 EALAVHFNVPYDGNHRAMKDVEINISIFKH 168
>gi|253800757|ref|YP_003033758.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis KZN
1435]
gi|297636389|ref|ZP_06954169.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis KZN
4207]
gi|297733383|ref|ZP_06962501.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis KZN
R506]
gi|313660714|ref|ZP_07817594.1| DNA polymerase III subunit epsilon [Mycobacterium tuberculosis KZN
V2475]
gi|375297980|ref|YP_005102247.1| DNA polymerase III subunit epsilon DnaQ [Mycobacterium tuberculosis
KZN 4207]
gi|392434194|ref|YP_006475238.1| DNA polymerase III subunit epsilon DnaQ [Mycobacterium tuberculosis
KZN 605]
gi|253322260|gb|ACT26863.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
KZN 1435]
gi|328460485|gb|AEB05908.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
KZN 4207]
gi|392055603|gb|AFM51161.1| DNA polymerase III epsilon subunit dnaQ [Mycobacterium tuberculosis
KZN 605]
Length = 329
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 16/134 (11%)
Query: 51 ESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRF 110
+S +L+ PK V + G+T ++ P+F ++A ++ +L GR HN+ F
Sbjct: 49 QSVVSLLNPK----VDPGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNV-AF 103
Query: 111 DCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRR----AGNMKMATLASYFGLGQQK- 165
D A + PV M T + RR N+++ TLA+++ + QQ+
Sbjct: 104 DYAFLAAEAEIAEAELPVDFVMC------TVELARRLQLGVDNLRLETLAAHWRVPQQRP 157
Query: 166 HRSLDDVRMNLEVL 179
H + DDVR+ +L
Sbjct: 158 HDAFDDVRVLTGIL 171
>gi|402310313|ref|ZP_10829279.1| DNA polymerase III, alpha subunit, Gram-positive type [Eubacterium
sp. AS15]
gi|400368765|gb|EJP21772.1| DNA polymerase III, alpha subunit, Gram-positive type [Eubacterium
sp. AS15]
Length = 1398
Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 53/196 (27%), Positives = 83/196 (42%), Gaps = 12/196 (6%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
+ FDLETT + + + E GAI V ++VE FS LI P+ + K + GI
Sbjct: 383 IVFDLETT--GFSNRNDAITEIGAIKVENGEIVE--EFSQLINPE--RPIPEKIQKLTGI 436
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
T E V P EV K + HN FD ++E +E P ID+
Sbjct: 437 TNEMVIDKPTISEVLPKFLDFCKDSILVAHN-SDFDTGFVREKASE--NNLPYDFDAIDT 493
Query: 136 LGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEV-LKHCATVLFLESSLP 193
+ +L+ N K+ T+A + + HR++DD ++ L + + +E
Sbjct: 494 V-ILSRLLMPDLKNHKLNTIAKELNVSLENHHRAVDDATATAQIFLNFISKLKAMEVENF 552
Query: 194 NTFNSNLQSSLTVTTR 209
N N ++S T R
Sbjct: 553 NEINEKIKSIDTSKIR 568
>gi|374323247|ref|YP_005076376.1| hypothetical protein HPL003_17045 [Paenibacillus terrae HPL-003]
gi|357202256|gb|AET60153.1| hypothetical protein HPL003_17045 [Paenibacillus terrae HPL-003]
Length = 245
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 14 EIVFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
E V FDLETT + G +L FGAI V ++E E F TL+ P+ +A+ +
Sbjct: 59 ETVVFDLETTGFSAQHGDE--ILSFGAIRVVGDTIMEKEQFYTLVNPR--TAIPEHITEL 114
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGH 105
GITRE ++A + S + GRV H
Sbjct: 115 TGITREMTDAALPLMDGLHDFMSFVGGRVLVAH 147
>gi|406587334|ref|ZP_11062231.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus sp. GMD1S]
gi|419814525|ref|ZP_14339306.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus sp. GMD2S]
gi|419817343|ref|ZP_14341507.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus sp. GMD4S]
gi|404466067|gb|EKA11426.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus sp. GMD4S]
gi|404471728|gb|EKA16210.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus sp. GMD2S]
gi|404473190|gb|EKA17544.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus sp. GMD1S]
Length = 821
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 89/196 (45%), Gaps = 20/196 (10%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLE T G + +++ G +++ ++V+ ++T + P + +K G+T +
Sbjct: 4 DLEAT---STGSKAKIIQVGIVVIENGEIVD--QYATDVNPHEPLDSHIKE--LTGLTDQ 56
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVP-VGMIDSLG 137
+ +APEF +VA KIF ++ ++ HN+ +FD + E G P V ++
Sbjct: 57 RLAAAPEFSQVAGKIFELVKDGIFVAHNV-QFDANLLAEFLFFEGYELRTPRVDTVELAQ 115
Query: 138 VLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHCATVLF------LES 190
VL +F + + L G+ +Q H +L D + E+L + LF LES
Sbjct: 116 VLYPQFEK----YNLGILCQELGIELEQAHAALSDAQATAELLLYMRQKLFELPKGLLES 171
Query: 191 SLPNTFNSNLQSSLTV 206
L N +S L +
Sbjct: 172 LLDLADNLLYESYLVI 187
>gi|310640616|ref|YP_003945374.1| exonuclease rnase t and DNA polymerase iii [Paenibacillus polymyxa
SC2]
gi|386039741|ref|YP_005958695.1| exonuclease domain-containing protein 1 [Paenibacillus polymyxa M1]
gi|309245566|gb|ADO55133.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus polymyxa
SC2]
gi|343095779|emb|CCC83988.1| exonuclease domain-containing protein 1 [Paenibacillus polymyxa M1]
Length = 223
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 79/181 (43%), Gaps = 19/181 (10%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRK--LVELESFSTLIKPKDLSAVALKSSR 71
+ + +DLE TV R A +++ GA+ V + L ++F + ++P + ++ + +
Sbjct: 2 QYIIYDLEFTVSRNARYSSEIIDIGAVKVIHGEDGLFVADTFHSFVRPSNRPVISTDTVQ 61
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCA---RIKEAFAEIGKPAPV 128
GIT+ +++AP F E + + W G + + CA ++ + V
Sbjct: 62 FTGITQRDIDAAPLFPEAVKQFIA------WLGTDSTYYLCAWGPDDRQKLVSHCRTHHV 115
Query: 129 PVGMIDSLGVLTEKFGR---RAGNMKMATLASYFGLGQ-----QKHRSLDDVRMNLEVLK 180
+G I + + ++ R G + +L+ L Q+HR+LDD +V
Sbjct: 116 DLGWIHNTNDIQKQISRLFSSNGKYRQLSLSQALELCNIEFDGQQHRALDDAVNTAQVFM 175
Query: 181 H 181
H
Sbjct: 176 H 176
>gi|404393644|ref|ZP_10985564.1| DNA polymerase III, alpha subunit, Gram-positive type
[Eubacteriaceae bacterium CM2]
gi|404278870|gb|EJZ44350.1| DNA polymerase III, alpha subunit, Gram-positive type
[Eubacteriaceae bacterium CM2]
Length = 1282
Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 49/159 (30%), Positives = 71/159 (44%), Gaps = 11/159 (6%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
E V FD+ETT + + + E GA+ + ++V +FS LI PK + K +
Sbjct: 277 EYVVFDIETT--GFSNKNDAITEIGAVKIKNCEIVG--TFSQLINPK--RPIPEKIQKLT 330
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT E V P EEV +G V HN FD I+E E + I
Sbjct: 331 GITDELVADKPFIEEVLPNFLEFCSGSVLVAHN-SDFDTGFIREKSFE--QKLNYDFDAI 387
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDD 171
D+L VL+ N K+ T+A + + HR++DD
Sbjct: 388 DTL-VLSRLIMTELKNHKLNTIAKELDISLENHHRAVDD 425
>gi|404393669|ref|ZP_10985577.1| DNA polymerase III, alpha subunit, Gram-positive type
[Eubacteriaceae bacterium CM2]
gi|404278800|gb|EJZ44313.1| DNA polymerase III, alpha subunit, Gram-positive type
[Eubacteriaceae bacterium CM2]
Length = 1402
Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 49/159 (30%), Positives = 71/159 (44%), Gaps = 11/159 (6%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
E V FD+ETT + + + E GA+ + ++V +FS LI PK + K +
Sbjct: 387 EYVVFDIETT--GFSNKNDAITEIGAVKIKNCEIVG--TFSQLINPK--RPIPEKIQKLT 440
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT E V P EEV +G V HN FD I+E E + I
Sbjct: 441 GITDELVADKPFIEEVLPNFLEFCSGSVLVAHN-SDFDTGFIREKSFE--QKLNYDFDAI 497
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDD 171
D+L VL+ N K+ T+A + + HR++DD
Sbjct: 498 DTL-VLSRLIMTELKNHKLNTIAKELDISLENHHRAVDD 535
>gi|386820628|ref|ZP_10107844.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Joostella marina DSM 19592]
gi|386425734|gb|EIJ39564.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Joostella marina DSM 19592]
Length = 259
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 77/186 (41%), Gaps = 22/186 (11%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
I FFDLETT A R V+E + V P ES + L+ P+ + SS G
Sbjct: 9 ICFFDLETTGIDVARDR--VVEISILKVFPNG--NKESKTWLVNPE--MPIPPASSAIHG 62
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFA------EIGKPAPV 128
IT E V + P F+E++ I++++ AG+N RFD + E ++G V
Sbjct: 63 ITDEKVANEPTFKELSKTIYNMIKDSDLAGYNSNRFDIPVLAEELLRSDIDFDMGSRVAV 122
Query: 129 PVGMI----------DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEV 178
V I + K A + T A+Y L Q R DD+ N++
Sbjct: 123 DVQTIFHKMEQRTLSAAYKFYCGKSLEDAHTAEADTNATYEVLKSQLDRYKDDLENNMKF 182
Query: 179 LKHCAT 184
L T
Sbjct: 183 LSEFTT 188
>gi|86134050|ref|ZP_01052632.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
gi|85820913|gb|EAQ42060.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
Length = 275
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Query: 12 TAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
T IVFFDLETT A R ++E + V P ES + L+ P+ + ++
Sbjct: 6 TKPIVFFDLETTGVNIATDR--IVEISILKVFPNG--NKESKTWLVNPE--IEIPQGATD 59
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
GIT E V + P F+E+A K+ ++ G AG N RFD + E G
Sbjct: 60 VHGITNEKVVTEPTFKELAGKVSEMIAGCDLAGFNSNRFDIPLLAEELMRAG 111
>gi|91784877|ref|YP_560083.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400]
gi|91688831|gb|ABE32031.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400]
Length = 395
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 7 SQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVA 66
S+ A IVF DLETT A R + E G + V P + +S+L+ P+
Sbjct: 19 SEPALDGPIVFVDLETTGGSTAEHR--ITEVGVVEVGP---AGVSRWSSLVDPQQPIPSF 73
Query: 67 LKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
++ + GIT V AP FE +A +F LNG+++ HN FD ++ F G
Sbjct: 74 IQ--QLTGITNAMVRGAPTFEAIAPALFERLNGKLFVAHNA-SFDRGFLRGEFRRAG 127
>gi|373111592|ref|ZP_09525847.1| hypothetical protein HMPREF9712_03440 [Myroides odoratimimus CCUG
10230]
gi|423131944|ref|ZP_17119619.1| hypothetical protein HMPREF9714_03019 [Myroides odoratimimus CCUG
12901]
gi|371640259|gb|EHO05864.1| hypothetical protein HMPREF9712_03440 [Myroides odoratimimus CCUG
10230]
gi|371640945|gb|EHO06539.1| hypothetical protein HMPREF9714_03019 [Myroides odoratimimus CCUG
12901]
Length = 257
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
I FFDLETT A R V+E + V P ES + L+ P+ A+ +S+ G
Sbjct: 9 ICFFDLETTGIDVARDR--VVEISILKVFPNG--NKESKTWLVNPE--RAIPAQSTAIHG 62
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
IT E V + P F+E+A +++++ AG N RFD + E G
Sbjct: 63 ITDEKVANEPTFKELAPLVYNMIKDSDLAGFNSDRFDIPLLAEELLRAG 111
>gi|423315875|ref|ZP_17293780.1| exonuclease, DNA polymerase III, epsilon subunit [Bergeyella
zoohelcum ATCC 43767]
gi|405585591|gb|EKB59415.1| exonuclease, DNA polymerase III, epsilon subunit [Bergeyella
zoohelcum ATCC 43767]
Length = 409
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 12/160 (7%)
Query: 50 LESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
++ F +L+ P+ + +A + GI+ + V +AP+F E+A +I I G GHNI
Sbjct: 33 MDQFFSLVNPE--AEIAPYVQKLTGISTKMVRTAPKFHELARRIVEITEGTTLVGHNI-D 89
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRS 168
FD +++ F +G + +D++ L ++ A + L G+ HR+
Sbjct: 90 FDYRMLRQEFRRLGYDFHIET--LDTIP-LAKQLIPDAEGYSLGKLVKSLGIPLSNAHRA 146
Query: 169 LDDVRMNLEVLKHCATVLFLESSLPNTFNSNLQSSLTVTT 208
+D R LE+ K + + + NT L T
Sbjct: 147 ENDARATLELFK-----ILISKDVENTIIQKLHEDTNAKT 181
>gi|375139240|ref|YP_004999889.1| exonuclease, DNA polymerase III, epsilon subunit family
[Mycobacterium rhodesiae NBB3]
gi|359819861|gb|AEV72674.1| exonuclease, DNA polymerase III, epsilon subunit family
[Mycobacterium rhodesiae NBB3]
Length = 339
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 51 ESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRF 110
+S +L+ P V + G+T E +E P F ++ + +L GR HN+ F
Sbjct: 59 QSLYSLLNP----GVDPGPTHVHGLTAEMLEGQPCFGDIVGDLIDLLRGRTLVAHNV-GF 113
Query: 111 DCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRSL 169
D + + + P+ M LT + N+++ TLA+++G+ Q K H +L
Sbjct: 114 DYSFLTAEAEMVAAELPIDTAMCTV--ELTRRLELGTENLRLETLAAHWGITQLKPHDAL 171
Query: 170 DDVRMNLEVLK 180
DD + ++LK
Sbjct: 172 DDAMVLAQILK 182
>gi|329961134|ref|ZP_08299389.1| exonuclease [Bacteroides fluxus YIT 12057]
gi|328532072|gb|EGF58882.1| exonuclease [Bacteroides fluxus YIT 12057]
Length = 256
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 70/166 (42%), Gaps = 10/166 (6%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
IVFFDLETT R ++E + V P ES + I P+ + +SS G
Sbjct: 9 IVFFDLETTGTNINSDR--IVEICYLKVYPNG--NEESKTMRINPE--MHIPAESSAVHG 62
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
I E + P F+EVA KI + + G AG N RFD + E F G +
Sbjct: 63 IYDEDIADCPTFKEVARKIANDIEGCDLAGFNSNRFDIPVLAEEFLRAGVDIDMSRRKFV 122
Query: 135 SLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
+ V+ K +R + A Y G + H + D R EVL
Sbjct: 123 DVQVIFHKMEQRTLS---AAYKFYCGKNLEDAHTAEADTRATYEVL 165
>gi|424863291|ref|ZP_18287204.1| DNA polymerase III, epsilon subunit [SAR86 cluster bacterium
SAR86A]
gi|400757912|gb|EJP72123.1| DNA polymerase III, epsilon subunit [SAR86 cluster bacterium
SAR86A]
Length = 238
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 11/164 (6%)
Query: 16 VFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+ D ETT + + G R V+E GA+++ RK E E F T + P L + ++S+ G
Sbjct: 6 IILDTETTGLEVKQGHR--VIEIGAVLLNDRKKSE-EHFHTYLNPSRL--IDEEASKVHG 60
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEA--FAEIGKPAPVPVGM 132
IT +E P F+E+A++ + G HN FD I A P +
Sbjct: 61 ITNSDLEDKPAFDEIAEEFIQFIEGSTLVIHN-APFDVGFINHELKLASTSYPMLEEICE 119
Query: 133 I-DSLGVLTEKF-GRRAGNMKMATLASYFGLGQQKHRSLDDVRM 174
I DSL + +K+ G+R +A G + H +L D +
Sbjct: 120 IEDSLTLARDKYPGQRNSLDALAMRFDISGYDRTFHGALLDANI 163
>gi|338734104|ref|YP_004672577.1| DNA polymerase III subunit epsilon [Simkania negevensis Z]
gi|336483487|emb|CCB90086.1| DNA polymerase III epsilon subunit [Simkania negevensis Z]
Length = 249
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 7/137 (5%)
Query: 50 LESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ES LI P + + IT E V+ P+ ++V + +G V GH I
Sbjct: 40 IESREDLIDPA--CPIPQHTIEIHHITDEMVQGKPKIQDVLAEYLEFFSGHVIIGHGIP- 96
Query: 110 FDCARIKEAFAEIGKPAPV-PVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQ-KHR 167
FD A ++ A + P+ + + ID+L L +G N + L S+F + HR
Sbjct: 97 FDIAIVEAAAQKFRIPSKLSKLPFIDTLR-LARLYGESPTN-SLEMLRSHFNIKPHGAHR 154
Query: 168 SLDDVRMNLEVLKHCAT 184
+++DV +N+EV KH +
Sbjct: 155 AMNDVHVNIEVFKHLCS 171
>gi|377558773|ref|ZP_09788355.1| DNA polymerase III epsilon subunit [Gordonia otitidis NBRC 100426]
gi|377524166|dbj|GAB33520.1| DNA polymerase III epsilon subunit [Gordonia otitidis NBRC 100426]
Length = 590
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 10/169 (5%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+V DLETT R + E GA+ + R L F+TL+ P + + + G
Sbjct: 24 LVVVDLETTGGSATDDR--ITEIGAVKI--RGGQVLGEFATLVDPG--APIPPQIVALTG 77
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
IT V AP +EV G + HN RFD + +++ + P +
Sbjct: 78 ITEAMVYDAPRIDEVLPSFIEFARGSILVAHNA-RFDMSFLRQNALRLHLQWPF-TATLC 135
Query: 135 SLGVLTEKFGR-RAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKH 181
++ + GR A ++++ LA F + + HR+LDD R +EV H
Sbjct: 136 TVTMARRILGRDEAPTVRLSALADLFDVTVRPTHRALDDARATVEVFHH 184
>gi|373451494|ref|ZP_09543415.1| DNA polymerase III, alpha subunit, Gram-positive type [Eubacterium
sp. 3_1_31]
gi|371968297|gb|EHO85758.1| DNA polymerase III, alpha subunit, Gram-positive type [Eubacterium
sp. 3_1_31]
Length = 1443
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 95/214 (44%), Gaps = 31/214 (14%)
Query: 18 FDLETTVPRRAGQRF-WVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGIT 76
FDLETT RF ++EFG I+ R ++ S +KP A++ ++ I+
Sbjct: 399 FDLETT---GLSSRFDHIIEFGGQIMKDRTCIK--SLQLFVKPP--IALSAFTTELTNIS 451
Query: 77 REAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG-KPAPVPVGMIDS 135
E +++A F E D+I + + HN FD + IG KP PV ID+
Sbjct: 452 EENMKNAKPFAECVDEILEFIGDSILVAHN-ASFDYGFLNAELERIGRKPLMNPV--IDT 508
Query: 136 LGV---LTEKFGRRAGNMKMATLASYFGLGQQK---HRSLDDVRMNLEV-------LKHC 182
L + + ++ G R GN LA +G+ + HR+ D + +V LKH
Sbjct: 509 LDLARSMMDRKGYRLGN-----LARQYGIRYDEDVAHRADYDAEVLAQVFMHMLNDLKHI 563
Query: 183 ATVLFLES-SLPNTFNSNLQSSLTVTTRSRSNGK 215
T+ L+ P+ FN +T+ ++ + K
Sbjct: 564 KTLKQLQDMQDPDCFNKVRDKHVTILAKNMAGLK 597
>gi|423135680|ref|ZP_17123326.1| hypothetical protein HMPREF9715_03101 [Myroides odoratimimus CIP
101113]
gi|371640784|gb|EHO06380.1| hypothetical protein HMPREF9715_03101 [Myroides odoratimimus CIP
101113]
Length = 257
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
I FFDLETT A R V+E + V P ES + L+ P+ A+ +S+ G
Sbjct: 9 ICFFDLETTGIDVARDR--VVEISILKVFPNG--NKESKTWLVNPE--RAIPAQSTAIHG 62
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
IT E V + P F+E+A +++++ AG N RFD + E G
Sbjct: 63 ITDEKVANEPTFKELAPLVYNMIKDSDLAGFNSDRFDIPLLAEELLRAG 111
>gi|187925051|ref|YP_001896693.1| DNA polymerase III subunit epsilon [Burkholderia phytofirmans PsJN]
gi|187716245|gb|ACD17469.1| DNA polymerase III, epsilon subunit [Burkholderia phytofirmans
PsJN]
Length = 383
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 9/120 (7%)
Query: 4 FIPSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLS 63
F+P + A IVF DLETT A R + E G + + P + +S+L+ P+
Sbjct: 5 FLP-EPALDGPIVFVDLETTGGSTAEHR--ITEVGVVEIGP---AGVSRWSSLVDPQ--Q 56
Query: 64 AVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
+ + GIT V AP F+ +A ++F LNG+++ HN FD ++ F +G
Sbjct: 57 PIPSFIQQLTGITNAMVRGAPTFDVIAPELFKRLNGKLFVAHNA-SFDRGFLRGEFRRVG 115
>gi|54310042|ref|YP_131062.1| DNA polymerase III subunit epsilon [Photobacterium profundum SS9]
gi|46914481|emb|CAG21260.1| Putative DNA polymerase III, epsilon subunit [Photobacterium
profundum SS9]
Length = 246
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 15/180 (8%)
Query: 7 SQAAGTAEIVFFDLETTVPRRAGQRF---WVLEFGAIIVCPRKLVELESFSTLIKPKDLS 63
+ A I+ D ETT G + ++E GA+ + RKL SF IKP
Sbjct: 4 TMKATNQRIIVLDTETTGMNMTGPHYEGHCIIEIGAVEIINRKLTG-NSFHVYIKPD--R 60
Query: 64 AVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAE-- 121
+ +++ GIT E + P ++EV D+ + G HN FD + F +
Sbjct: 61 TIEVEAIGVHGITDEFLIGKPVYKEVHDEFLEFIKGAELVAHN-APFDVGFMDYEFRKLN 119
Query: 122 --IGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
IGK + D+L + + F + N+ + L S +G+ HR+L ++ E+L
Sbjct: 120 PNIGKTEDF-CKVTDTLAMAKKIFPGKRNNLDI--LCSRYGI-DNSHRTLHGALLDAEIL 175
>gi|293402030|ref|ZP_06646169.1| DNA polymerase III, alpha subunit, Gram-positive type
[Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291304422|gb|EFE45672.1| DNA polymerase III, alpha subunit, Gram-positive type
[Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 1443
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 95/214 (44%), Gaps = 31/214 (14%)
Query: 18 FDLETTVPRRAGQRF-WVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGIT 76
FDLETT RF ++EFG I+ R ++ S +KP A++ ++ I+
Sbjct: 399 FDLETT---GLSSRFDHIIEFGGQIMKDRTCIK--SLQLFVKPP--IALSAFTTELTNIS 451
Query: 77 REAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG-KPAPVPVGMIDS 135
E +++A F E D+I + + HN FD + IG KP PV ID+
Sbjct: 452 EENMKNAKPFAECVDEILEFIGDSILVAHN-ASFDYGFLNAELERIGRKPLMNPV--IDT 508
Query: 136 LGV---LTEKFGRRAGNMKMATLASYFGLGQQK---HRSLDDVRMNLEV-------LKHC 182
L + + ++ G R GN LA +G+ + HR+ D + +V LKH
Sbjct: 509 LDLARSMMDRKGYRLGN-----LARQYGIRYDEDVAHRADYDAEVLAQVFMHMLNDLKHI 563
Query: 183 ATVLFLES-SLPNTFNSNLQSSLTVTTRSRSNGK 215
T+ L+ P+ FN +T+ ++ + K
Sbjct: 564 KTLKQLQDMQDPDCFNKVRDKHVTILAKNMAGLK 597
>gi|423367558|ref|ZP_17344990.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD142]
gi|401084108|gb|EJP92358.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD142]
Length = 315
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPSRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EV + L+ + HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIAEVLPLFLAFLDTNIIVAHN-ASFDMRFLKSNVNMLGLPEP-KNNVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + CA V
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLNSHNAFDDCITCAAVYQKCAAV 171
>gi|373464354|ref|ZP_09555893.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
kisonensis F0435]
gi|371762556|gb|EHO51085.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
kisonensis F0435]
Length = 954
Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 45/189 (23%), Positives = 86/189 (45%), Gaps = 13/189 (6%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+ETT A ++F +V K+ + +F T I P+ V + + GIT +
Sbjct: 20 DIETTGTDLAADD-RTIQFSCCLVSDNKITD--TFVTDINPQ--REVPNRIVQLTGITND 74
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
+ AP F++VA K++ +LN V+ HN+ FD + F +G P + + ID++
Sbjct: 75 RLTHAPTFDQVAAKLYGLLNETVFVAHNV-NFDFPFLNAEFQRVGYPE-LQIEAIDTV-T 131
Query: 139 LTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSLPNTFNS 198
+++ + ++ L++YF + + D + L +L L + ++
Sbjct: 132 MSQILLPTLSSYRLQDLSAYFNIEHDHPHTADS-----DALATAKLLLILLRQIEELPST 186
Query: 199 NLQSSLTVT 207
LQ L V+
Sbjct: 187 TLQQILNVS 195
>gi|423345229|ref|ZP_17322918.1| exonuclease, DNA polymerase III, epsilon subunit [Parabacteroides
merdae CL03T12C32]
gi|409223015|gb|EKN15952.1| exonuclease, DNA polymerase III, epsilon subunit [Parabacteroides
merdae CL03T12C32]
Length = 256
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+VFFDLETT R ++E + V P + ES + I P+ + +S+ G
Sbjct: 9 LVFFDLETTGINIVKDR--IVEISFVKVYPNG--KEESKTRRINPE--MPIPPESTAIHG 62
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
IT E V+ P F+E+A + + ++G AG+N RFD + E F G
Sbjct: 63 ITDEDVKDCPTFKEIAKSLAAQIDGCDLAGYNSNRFDIPLLAEEFLRAG 111
>gi|433603457|ref|YP_007035826.1| hypothetical protein BN6_16300 [Saccharothrix espanaensis DSM
44229]
gi|407881310|emb|CCH28953.1| hypothetical protein BN6_16300 [Saccharothrix espanaensis DSM
44229]
Length = 571
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 72/174 (41%), Gaps = 20/174 (11%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
V FDLETT + + E GA+ V R L +FSTL+ P+ + + G
Sbjct: 23 FVVFDLETT--GGSANADTITEIGAVKV--RGGRVLGTFSTLVDPE--RGIPPQIVALTG 76
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
IT+ V AP V G V HN FD +K A G P P
Sbjct: 77 ITQLMVTGAPRLATVLPAFLEFAAGSVLVAHN-SGFDVGFVKAACERHGYHWPKPS---- 131
Query: 135 SLGVLTEKFGRR------AGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLKH 181
V T K RR A + +++ LA F +G HR+L D + +EVL H
Sbjct: 132 --VVCTVKLARRVLTRDEAPSCRLSALAQLFRIGTTPNHRALVDAQATVEVLHH 183
>gi|344205209|ref|YP_004790351.1| DNA polymerase III subunit alpha [Mycoplasma putrefaciens KS1]
gi|343957132|gb|AEM68847.1| DNA polymerase III, alpha subunit [Mycoplasma putrefaciens KS1]
Length = 1483
Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 11/168 (6%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
++VFFDLETT + + ++EFGAII K E + LIKPK + +
Sbjct: 435 KMVFFDLETT--GLSPELDEIIEFGAIIF-DTKTGERKEIDILIKPK--KPLKQFTKELT 489
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
IT + +E+ P E+ +I+ ++ V HN FD + ++G P P+ +I
Sbjct: 490 NITDQMLENKPSIEQAFAEIYDVIKDGVLLAHNA-NFDFNFLSSWAKKLGYP-PLTNTII 547
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGL---GQQKHRSLDDVRMNLEV 178
D+L V F N ++ TLA G+ + HR D + EV
Sbjct: 548 DTLSVARVIFPELK-NHRLETLAKKTGVYYDARVAHRGNYDADILAEV 594
>gi|159046099|ref|YP_001534893.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12]
gi|157913859|gb|ABV95292.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12]
Length = 485
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 52/122 (42%), Gaps = 8/122 (6%)
Query: 11 GTAEIVFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALK 68
G + V FD ETT +P R + V + A V K+V+ E F TL+ P + L
Sbjct: 287 GDLKYVIFDTETTGLLPERGDE---VCQIAACRVVNGKMVKTEMFDTLVNPG--RPIPLS 341
Query: 69 SSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPV 128
++ GIT V AP+F +G V HN FD A AEIG
Sbjct: 342 ATNIHGITDAMVADAPDFLTAGRAFHGFADGAVLIAHN-APFDMAFFYRKQAEIGARFDH 400
Query: 129 PV 130
PV
Sbjct: 401 PV 402
>gi|375094186|ref|ZP_09740451.1| exonuclease, DNA polymerase III, epsilon subunit family
[Saccharomonospora marina XMU15]
gi|374654919|gb|EHR49752.1| exonuclease, DNA polymerase III, epsilon subunit family
[Saccharomonospora marina XMU15]
Length = 563
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 72/173 (41%), Gaps = 24/173 (13%)
Query: 16 VFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
V DLETT P G + E GA+ V R L F+TL+ P + + +
Sbjct: 18 VIVDLETTGGAPAARG----ITEIGAVKV--RGGETLGEFATLVDPG--APIPPQVVALT 69
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V +AP E V +G V HN FD ++ A G P P
Sbjct: 70 GITSAMVSAAPRIERVLPAFLEFASGAVLVAHNA-GFDTTFLRAACQAHGYAWPRPP--- 125
Query: 134 DSLGVLTEKFGRRA------GNMKMATLASYFGL-GQQKHRSLDDVRMNLEVL 179
V T + RR G +++ LA+ G + HR+LDD R ++VL
Sbjct: 126 ---VVCTLRLARRVLAPEHTGGYRLSALATLLGARTKPTHRALDDARATVDVL 175
>gi|309790215|ref|ZP_07684787.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides
DG-6]
gi|308227800|gb|EFO81456.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6]
Length = 935
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 13/154 (8%)
Query: 34 VLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKI 93
++EF A+ ++ LE FS LI P+ + LK +R GIT + + AP F +V KI
Sbjct: 23 IIEFAAVKFRDGEI--LERFSQLIAPR--QPLPLKITRLTGITAQDLADAPHFNDVGGKI 78
Query: 94 FSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMA 153
+ GH+I FD ++ +P + D+ + T + A K+
Sbjct: 79 AGFIKSYPLVGHSI-NFDLGMLRAQGMNFTQP------VYDTFDLATILMPQIA-VYKLG 130
Query: 154 TLASYFGLGQ-QKHRSLDDVRMNLEVLKHCATVL 186
+A G+ HR+L+D + V H V+
Sbjct: 131 AIADRLGIPHPDDHRALNDAEVTAHVFTHLLGVI 164
>gi|189349710|ref|YP_001945338.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC
17616]
gi|189333732|dbj|BAG42802.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC
17616]
Length = 375
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 16/187 (8%)
Query: 6 PSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAV 65
P A +VF DLETT A R + E G + + P + + +++TL+ P +
Sbjct: 6 PPDPASEQPLVFVDLETTGGTPAEHR--ITEIGVVEIGP---LGVSTWTTLVNPG--QPI 58
Query: 66 ALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG-- 123
+ GI+ V AP F E+A +F L+G+++ HN FD ++ F G
Sbjct: 59 PPFIQQLTGISDAMVRDAPSFAELAPALFERLDGKLFVAHNA-SFDRGFLRAEFERAGFA 117
Query: 124 -KPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
P ++ ++ + F R + + A +A + + +HR+L D + + +H
Sbjct: 118 FNP-----DVLCTVRLSRALFPRESRHGLDALIARHGLVPAARHRALADADLLWQFWRHL 172
Query: 183 ATVLFLE 189
++ LE
Sbjct: 173 HGIVPLE 179
>gi|218231342|ref|YP_002368423.1| DNA polymerase III subunit epsilon [Bacillus cereus B4264]
gi|229146178|ref|ZP_04274553.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST24]
gi|296504117|ref|YP_003665817.1| DNA polymerase III subunit epsilon TlpA [Bacillus thuringiensis
BMB171]
gi|218159299|gb|ACK59291.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
B4264]
gi|228637237|gb|EEK93692.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST24]
gi|296325169|gb|ADH08097.1| DNA polymerase III subunit epsilon tlpA [Bacillus thuringiensis
BMB171]
Length = 315
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 9/172 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D ETT + +++ A+ +LV+ F + + P+ + + +
Sbjct: 9 DYVVIDFETTGFNPYNDK--IIQVAAVKYRNHELVD--QFVSYVNPE--RPIPDRITSLT 62
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EEV + L+ V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + C +
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCVAI 171
>gi|423616157|ref|ZP_17591991.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD115]
gi|401259122|gb|EJR65299.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VD115]
Length = 315
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 3/112 (2%)
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V +AP EEV + L V HN FD +K +G P P +I
Sbjct: 63 GITNYRVSNAPTIEEVLPLFLAFLYTNVIVAHN-ASFDMRFLKSNVNMLGLPEP-KNKVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V + C ++
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCTSI 171
>gi|320528160|ref|ZP_08029325.1| DNA polymerase III subunit epsilon domain protein [Solobacterium
moorei F0204]
gi|320131508|gb|EFW24073.1| DNA polymerase III subunit epsilon domain protein [Solobacterium
moorei F0204]
Length = 186
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 14 EIVFFDLETTVPRRAGQ---RFWVLEFGAIIVCPRKLVELESFSTLIKPK-DLSAVALKS 69
+IV D ET + A V+E G II + + +LIKP+ ++ + +
Sbjct: 3 KIVAIDFETANNQMASVCSVGVAVMEDGVII---------DHYYSLIKPEENVGYFSPYN 53
Query: 70 SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVP 129
R GIT V+ AP F E+ ++ V HN RFD + +K+ GK PV
Sbjct: 54 IRIHGITARDVKGAPTFSEIYSELTGYFEDAVIVAHN-ARFDMSCLKQTCLNTGKKIPV- 111
Query: 130 VGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
+ D++ + F + ++ + Y G+ H +L D LE++
Sbjct: 112 LEYFDTVELCKRVFSNLEHH-RLNDVCEYIGIELDHHNALSDANGCLEIV 160
>gi|374289372|ref|YP_005036457.1| putative DNA polymerase III PolC-type [Bacteriovorax marinus SJ]
gi|301167913|emb|CBW27498.1| putative DNA polymerase III PolC-type [Bacteriovorax marinus SJ]
Length = 438
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 10/173 (5%)
Query: 8 QAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVAL 67
+ E FDLETT + ++E G + + ++++ +++ LI+P+ +
Sbjct: 6 ELINNLEFCVFDLETTGGNHKSDK--IIEIGLVKIKNFEVIDQKNY--LIQPE--IKIPE 59
Query: 68 KSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAP 127
+ I E V+ +P E+V D+I + + HN FD +GKP
Sbjct: 60 FIQKLTSIKEEDVKDSPVIEDVIDEILKFMGDSILVAHN-TSFDVPFFNSVLKRLGKPQL 118
Query: 128 VPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVL 179
+ +L +T+ N + ++ FG+ +K HR+LDD E+L
Sbjct: 119 KNKSLCTNL--MTKYLIPNLMNSNLNYMSKIFGIKHKKAHRALDDALATAELL 169
>gi|161525562|ref|YP_001580574.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC
17616]
gi|160342991|gb|ABX16077.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans ATCC
17616]
Length = 398
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 16/192 (8%)
Query: 1 MDGFIPSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK 60
M P A +VF DLETT A R + E G + + P + + +++TL+ P
Sbjct: 24 MSDSCPPDPASEQPLVFVDLETTGGTPAEHR--ITEIGVVEIGP---LGVSTWTTLVNPG 78
Query: 61 DLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFA 120
+ + GI+ V AP F E+A +F L+G+++ HN FD ++ F
Sbjct: 79 --QPIPPFIQQLTGISDAMVRDAPSFAELAPALFERLDGKLFVAHNA-SFDRGFLRAEFE 135
Query: 121 EIG---KPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLE 177
G P ++ ++ + F R + + A +A + + +HR+L D + +
Sbjct: 136 RAGFAFNP-----DVLCTVRLSRALFPRESRHGLDALIARHGLVPAARHRALADADLLWQ 190
Query: 178 VLKHCATVLFLE 189
+H ++ LE
Sbjct: 191 FWRHLHGIVPLE 202
>gi|315924481|ref|ZP_07920702.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263]
gi|315622185|gb|EFV02145.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263]
Length = 1442
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 79/183 (43%), Gaps = 26/183 (14%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
E VFFDLETT AG R ++E A+ + + + L++F T + P + K +
Sbjct: 425 GEFVFFDLETT-GLYAG-RDAIIEIAAVKIKNKHV--LDTFQTFVNPH--RPIPQKITEL 478
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
IT + V E E +G++ A HN FD + A G P +
Sbjct: 479 TSITDQMVAQGKEEEAAVRAFLDFCDGKILAAHNA-SFDMGFMSIALERYGIPNTIT--Y 535
Query: 133 IDSLGV---LTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDD--------VR-MNLEVL 179
+D+L + L R N+K LASYF + HR++DD VR M L
Sbjct: 536 VDTLPMARTLIPDIARH--NLK--KLASYFKIDMGHHHRAIDDSICSAKIFVRLMGLAEK 591
Query: 180 KHC 182
+HC
Sbjct: 592 QHC 594
>gi|423207434|ref|ZP_17193990.1| DNA polymerase III, epsilon subunit [Aeromonas veronii AMC34]
gi|404620501|gb|EKB17398.1| DNA polymerase III, epsilon subunit [Aeromonas veronii AMC34]
Length = 244
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 84/195 (43%), Gaps = 18/195 (9%)
Query: 16 VFFDLETTVPRRAGQRFW----VLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
+ D ETT G + ++E G + V RKL + IKP V ++ +
Sbjct: 10 IILDTETTGMNTGGGPVYLGHRIIEIGCVEVINRKLTG-NHYHVYIKPD--RPVDPEAVQ 66
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG---KPAPV 128
GIT E + P F ++AD+ + G HN FD + + F+++G K A +
Sbjct: 67 VHGITDEFLRDKPSFSQIADEFLEFIRGAELIAHNA-PFDVSFMDYEFSKLGLNFKTADI 125
Query: 129 PVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFL 188
+ D+L + + F + N+ + L +G+ HR+L ++ E+L A V L
Sbjct: 126 -CTITDTLAMARDLFPGKRNNLDV--LCDRYGI-DNSHRTLHGALLDAEIL---ADVYLL 178
Query: 189 ESSLPNTFNSNLQSS 203
+ N +SS
Sbjct: 179 MTGGQTKLNLATESS 193
>gi|423511605|ref|ZP_17488136.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuA2-1]
gi|402451219|gb|EJV83044.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuA2-1]
Length = 315
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 3/112 (2%)
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V AP EV + L+ + HN FD +K +G P P +I
Sbjct: 63 GITNYRVSDAPTIAEVLPLFLAFLDTNIIVAHN-ASFDMRFLKSNVNMLGLPEP-KNNVI 120
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATV 185
D++ L +K+ + A N K+ TL G+ H + DD V ++CA V
Sbjct: 121 DTV-FLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQNCAAV 171
>gi|281492444|ref|YP_003354424.1| ATP-dependent DNA helicase/DNA polymerase III subunit epsilon
[Lactococcus lactis subsp. lactis KF147]
gi|281376108|gb|ADA65599.1| ATP-dependent DNA helicase/DNA polymerase III, epsilon subunit
[Lactococcus lactis subsp. lactis KF147]
Length = 794
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 58/105 (55%), Gaps = 7/105 (6%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLE T + + +++ G ++V ++VE +FST + P + + + S G++ +
Sbjct: 11 DLEATDAHSSENK--IIQIGIVLVEDGEIVE--TFSTEVNPHE--PLLPRISELTGLSDK 64
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
+++APEF EVA K+ +L V+ HN RFD ++++F G
Sbjct: 65 QLKTAPEFSEVAGKVRELLTDSVFVAHN-ARFDYGLLEKSFLNAG 108
>gi|423330056|ref|ZP_17307856.1| hypothetical protein HMPREF9711_03430 [Myroides odoratimimus CCUG
3837]
gi|404602528|gb|EKB02224.1| hypothetical protein HMPREF9711_03430 [Myroides odoratimimus CCUG
3837]
Length = 257
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
I FFDLETT A R V+E + V P ES + L+ P+ A+ +S+ G
Sbjct: 9 ICFFDLETTGIDVARDR--VVEISILKVFPNG--NKESKTWLVNPE--RAIPAQSTAIHG 62
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
IT E V + P F+E+A +++++ AG N RFD + E G
Sbjct: 63 ITDEKVANEPTFKELAPLVYNMIKDSDLAGFNSDRFDIPLLAEELLRAG 111
>gi|418182623|ref|ZP_12819184.1| exonuclease family protein [Streptococcus pneumoniae GA43380]
gi|353850860|gb|EHE30864.1| exonuclease family protein [Streptococcus pneumoniae GA43380]
Length = 174
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 26/161 (16%)
Query: 49 ELESFSTLIKPKDLSAVALKS--SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHN 106
E++++ + + ++V LKS + GIT E ++ AP E+V ++ + + G+N
Sbjct: 14 EIDAYDSYVH----TSVPLKSFINGLTGITAETLKDAPPVEKVLEEFQEFVGSLLMIGYN 69
Query: 107 IRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRA------GNMKMATLASYFG 160
+ D + E + + V + E F RR+ N+K+ T+AS+ G
Sbjct: 70 AAKSDLPILAEHGLDYSQQYKVDL--------YDEAFERRSSDLHGIANLKLQTVASFLG 121
Query: 161 LGQQKHRSLDDVRMNLEVLK------HCATVLFLESSLPNT 195
Q H SL+D RM V + +L ESSL N
Sbjct: 122 FQGQSHNSLEDARMTARVYESFLESDQARELLETESSLSNN 162
>gi|385831314|ref|YP_005869127.1| ATP-dependent DNA helicase DinG [Lactococcus lactis subsp. lactis
CV56]
gi|418037592|ref|ZP_12675967.1| Hydrolase acting on acid anhydrides in phosphorous-containing
anhydrides [Lactococcus lactis subsp. cremoris CNCM
I-1631]
gi|326407322|gb|ADZ64393.1| ATP-dependent DNA helicase DinG [Lactococcus lactis subsp. lactis
CV56]
gi|354694360|gb|EHE94026.1| Hydrolase acting on acid anhydrides in phosphorous-containing
anhydrides [Lactococcus lactis subsp. cremoris CNCM
I-1631]
Length = 794
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 58/105 (55%), Gaps = 7/105 (6%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLE T + + +++ G ++V ++VE +FST + P + + + S G++ +
Sbjct: 11 DLEATDAHSSENK--IIQIGIVLVEDGEIVE--TFSTEVNPHE--PLLPRISELTGLSDK 64
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
+++APEF EVA K+ +L V+ HN RFD ++++F G
Sbjct: 65 QLKTAPEFSEVAAKVRELLTDSVFVAHN-ARFDYGLLEKSFLNAG 108
>gi|403745742|ref|ZP_10954490.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
hesperidum URH17-3-68]
gi|403121086|gb|EJY55410.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
hesperidum URH17-3-68]
Length = 223
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 77/163 (47%), Gaps = 7/163 (4%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT R +L A + R+ + E + L++ DL+ V+ R G+T E
Sbjct: 40 DLETTGFSAEADR--ILSVAAACMTGRQGLS-EMYYELVRHDDLAGVSDTVWRLTGLTPE 96
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
A+ S E E V + + GRVW H+ R + + ++ + + P+ ID+ V
Sbjct: 97 ALHSGKELERVLRHVLGMAVGRVWIAHHA-RHELSFLQRQARLLWRLKLRPIA-IDT-AV 153
Query: 139 LTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLK 180
+ + R + + + ++ G+ + +H++ DVRM EV +
Sbjct: 154 VAQALARISRTPTLEEVCAWLGVEVKHRHQADADVRMTAEVWR 196
>gi|269127278|ref|YP_003300648.1| DNA polymerase III subunit epsilon [Thermomonospora curvata DSM
43183]
gi|268312236|gb|ACY98610.1| DNA polymerase III, epsilon subunit [Thermomonospora curvata DSM
43183]
Length = 605
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 72/168 (42%), Gaps = 12/168 (7%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
V DLETT A + E GA+ V R L F+TL+ P + + G
Sbjct: 44 FVVVDLETTGGSPADSA--ITEVGAVKV--RGGERLGEFATLVDPG--VPIPPFITALTG 97
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPV-PVGMI 133
IT++ V +AP V G V HN FD ++ A P P PV +
Sbjct: 98 ITQQMVTNAPPMSAVLPAFLEFARGCVLVAHNA-PFDIGFLRAACTAHDHPWPAFPV--V 154
Query: 134 DSLGVLTEKFGR-RAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVL 179
D+ + R N K+ATLA YF G + HR+L D R ++VL
Sbjct: 155 DTADLARRVLTREEVPNCKLATLARYFRTGTEPCHRALADARATVDVL 202
>gi|383754985|ref|YP_005433888.1| putative DNA polymerase III subunit epsilon [Selenomonas
ruminantium subsp. lactilytica TAM6421]
gi|381367037|dbj|BAL83865.1| putative DNA polymerase III subunit epsilon [Selenomonas
ruminantium subsp. lactilytica TAM6421]
Length = 191
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 12/127 (9%)
Query: 51 ESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRF 110
+ + TLI+P ++ + + GIT + ++AP F E+ ++ S L GR+ HN RF
Sbjct: 34 DVYYTLIQPP-MNKYNYFNVQIHGITPQDTKNAPTFAEIWPELKSHLEGRIVVAHN-ARF 91
Query: 111 DCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAG----NMKMATLASYFGLGQQKH 166
D + + A G AP D++ + R+A N K+ T+ ++ + Q H
Sbjct: 92 DMSVLSACLATEGLAAP-DFSYCDTVAI-----ARKAWPFLENHKLDTVGTHLHIDFQHH 145
Query: 167 RSLDDVR 173
++DD R
Sbjct: 146 NAMDDAR 152
>gi|374673940|dbj|BAL51831.1| ATP-dependent helicase DinG [Lactococcus lactis subsp. lactis IO-1]
Length = 794
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 58/105 (55%), Gaps = 7/105 (6%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLE T + + +++ G ++V ++VE +FST + P + + + S G++ +
Sbjct: 11 DLEATDAHSSENK--IIQIGIVLVEDGEIVE--TFSTEVNPHE--PLLPRISELTGLSDK 64
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
+++APEF EVA K+ +L V+ HN RFD ++++F G
Sbjct: 65 QLKTAPEFSEVAAKVRELLTDSVFVAHN-ARFDYGLLEKSFLNAG 108
>gi|163791070|ref|ZP_02185490.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
[Carnobacterium sp. AT7]
gi|159873626|gb|EDP67710.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
[Carnobacterium sp. AT7]
Length = 939
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 8/109 (7%)
Query: 19 DLETTVPRRA-GQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITR 77
D+ETT A G R +++FG +++ ++V F+T I P L+++ + G++
Sbjct: 11 DIETTGGNVASGDR--MIQFGCVLLEGDQVVH--RFATNINP--LTSIPKQIEHLTGLSN 64
Query: 78 EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPA 126
+ V AP FE++A I+++L+G + HNI +FD + G PA
Sbjct: 65 KTVAQAPYFEDIAATIYNLLDGCIIIAHNI-QFDYTFLSAELQRCGMPA 112
>gi|429758674|ref|ZP_19291187.1| exonuclease, DNA polymerase III, epsilon subunit family
[Actinomyces sp. oral taxon 181 str. F0379]
gi|429172888|gb|EKY14425.1| exonuclease, DNA polymerase III, epsilon subunit family
[Actinomyces sp. oral taxon 181 str. F0379]
Length = 213
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 75/172 (43%), Gaps = 18/172 (10%)
Query: 9 AAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALK 68
A A+ + DLETT R ++E GA + R+L++ SFS LI P S +
Sbjct: 19 AWNQAKWLVVDLETT---GLSSRDTIIEIGAAVYENRELID--SFSALINPG--SPLPSF 71
Query: 69 SSRCDGITREAVESAPEFEEVADKIFSIL-----NGRVWAG---HNIRRFDCARIKEAFA 120
+ G+ E + AP+ V G++ AG HN+ FD ++ A
Sbjct: 72 ITALTGLDDETLAHAPDLHTVFSHFCQWAEHLCDQGKI-AGLIAHNVA-FDWGFLERAQR 129
Query: 121 EIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDV 172
G P P ID+L + N K+ TL +F LG +HR+LDD
Sbjct: 130 TCGMPLPH-FQPIDTLSMARALLPTEVPNHKLTTLREHFELGGGQHRALDDA 180
>gi|406025570|ref|YP_006705871.1| DNA polymerase III subunit epsilon [Cardinium endosymbiont cEper1
of Encarsia pergandiella]
gi|404433169|emb|CCM10451.1| DNA polymerase III subunit epsilon [Cardinium endosymbiont cEper1
of Encarsia pergandiella]
Length = 266
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 18/173 (10%)
Query: 12 TAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
T +VF DLETT R ++E I + P +F I P+ + ++SS
Sbjct: 6 TNSLVFLDLETTGTNVVHDR--IIEIAMIKLMPNG--NRLTFYKRINPE--QTIPIESSL 59
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GI E ++ P F+++ ++ + L G AG N+ RFD + E+F V
Sbjct: 60 IHGIYTEDLKDKPTFKQIGKELIAFLKGADLAGFNLLRFDIPILVESFLRAELEFKVETR 119
Query: 132 MIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-----HRSLDDVRMNLEVL 179
I + L +R TL + + QK H ++ D+ LEVL
Sbjct: 120 KIVDVQKLFHLMEKR-------TLKAAYQFYCQKELDGAHNAMVDIEATLEVL 165
>gi|269956792|ref|YP_003326581.1| DNA polymerase III subunit epsilon [Xylanimonas cellulosilytica DSM
15894]
gi|269305473|gb|ACZ31023.1| DNA polymerase III, epsilon subunit [Xylanimonas cellulosilytica
DSM 15894]
Length = 584
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 77/168 (45%), Gaps = 14/168 (8%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKP-KDLSAVALKSSRCDG 74
V DLETT R + E GA+ V R L F +L+ P +++ A +R G
Sbjct: 34 VVVDLETTGTRTTDS--GITEIGAVKV--RGGEVLGEFQSLVNPGREVPAFV---ARLTG 86
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAP-VPVGMI 133
IT V +AP + V + V HN FD +K A A +G P P PV +
Sbjct: 87 ITTAMVSTAPSIDLVLPSFLEWAHDCVLVAHNA-PFDVGFLKAAAAGLGYPWPGFPV--V 143
Query: 134 DSLGVLTEKFGR-RAGNMKMATLASYF-GLGQQKHRSLDDVRMNLEVL 179
D++ + + A N K+ATLA F +HR+L D R ++VL
Sbjct: 144 DTVPLARRVVPKDEAPNHKLATLAHLFRARVTPEHRALADARATVDVL 191
>gi|86149218|ref|ZP_01067450.1| DNA polymerase III PolC-type [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|88596976|ref|ZP_01100212.1| exonuclease, possibly dna polymerase III epsilon subunit
[Campylobacter jejuni subsp. jejuni 84-25]
gi|218562107|ref|YP_002343886.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni NCTC 11168 = ATCC 700819]
gi|317510490|ref|ZP_07967907.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Campylobacter jejuni subsp. jejuni 305]
gi|403055230|ref|YP_006632635.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni NCTC 11168-BN148]
gi|415730219|ref|ZP_11472913.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Campylobacter jejuni subsp. jejuni DFVF1099]
gi|419636935|ref|ZP_14169119.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 9879]
gi|419674883|ref|ZP_14204164.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 110-21]
gi|419692547|ref|ZP_14220632.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1928]
gi|85840576|gb|EAQ57833.1| DNA polymerase III PolC-type [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|88190665|gb|EAQ94638.1| exonuclease, possibly dna polymerase III epsilon subunit
[Campylobacter jejuni subsp. jejuni 84-25]
gi|112359813|emb|CAL34600.1| exonuclease, dna polymerase III epsilon subunit [Campylobacter
jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
gi|315928220|gb|EFV07537.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Campylobacter jejuni subsp. jejuni DFVF1099]
gi|315930011|gb|EFV09154.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Campylobacter jejuni subsp. jejuni 305]
gi|380616278|gb|EIB35487.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 9879]
gi|380652444|gb|EIB68925.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 110-21]
gi|380669498|gb|EIB84782.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1928]
gi|401780882|emb|CCK66577.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni NCTC 11168-BN148]
Length = 253
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+E+T G+ +LE GA+ + K E+ F + +K K++ + GIT E
Sbjct: 76 DIESTGGVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPK---NITELTGITYE 127
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
VE+A +V L ++ HN+R FD + I +A E G G++ + +
Sbjct: 128 MVENASSLAKVLSDFRLFLKDSIFVAHNVR-FDYSFISKALNECG------FGILLNRRI 180
Query: 139 LTEKFGR---RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
T +F + + K+ L + G+ HR+LDD E+ K+C
Sbjct: 181 CTIEFAQCCIESPKYKLEVLKEFLGVENMHHRALDDALAAAEIFKYC 227
>gi|421589866|ref|ZP_16034948.1| DNA polymerase III subunit epsilon [Rhizobium sp. Pop5]
gi|403705096|gb|EJZ20782.1| DNA polymerase III subunit epsilon [Rhizobium sp. Pop5]
Length = 240
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 67/164 (40%), Gaps = 8/164 (4%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
+ FD ETT R ++E G I + + I P D V + GI
Sbjct: 4 IIFDTETTGLDNRTDR--IIEIGGIELF-NHFPTGNTIHIFINPGD-QKVHPDALAVHGI 59
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
T E ++ F EVA+KI + W HN FD I FA IG P +P ++D+
Sbjct: 60 TDEFLKDKQPFAEVAEKILTFFGDAKWIAHNA-TFDMGFINAEFARIGLPPILPERVVDT 118
Query: 136 LGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
L + K G + L +G+ HR+ ++ E+L
Sbjct: 119 LSMARRK--HPMGPNSLDALCRRYGI-DNSHRTKHGALLDSELL 159
>gi|421289622|ref|ZP_15740373.1| exonuclease [Streptococcus pneumoniae GA54354]
gi|395888863|gb|EJG99873.1| exonuclease [Streptococcus pneumoniae GA54354]
Length = 174
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 26/161 (16%)
Query: 49 ELESFSTLIKPKDLSAVALKS--SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHN 106
E++++ + + ++V LKS + GIT E ++ AP E+V ++ + + G+N
Sbjct: 14 EIDAYDSYVH----TSVPLKSFINGLTGITAETLKDAPPVEKVLEEFQEFVGSLLMIGYN 69
Query: 107 IRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRA------GNMKMATLASYFG 160
+ D + E + + V + E F RR+ N+K+ T+AS+ G
Sbjct: 70 AAKSDLPILAEHGLDYSQQYKVDL--------YDEAFERRSSDLHGIANLKLQTVASFLG 121
Query: 161 LGQQKHRSLDDVRMNLEVLK------HCATVLFLESSLPNT 195
Q H SL+D RM V + +L ESSL N
Sbjct: 122 FQGQSHNSLEDARMTARVYESFLESDQARELLETESSLSNN 162
>gi|383790057|ref|YP_005474631.1| DNA polymerase III subunit epsilon family exonuclease [Spirochaeta
africana DSM 8902]
gi|383106591|gb|AFG36924.1| exonuclease, DNA polymerase III, epsilon subunit family
[Spirochaeta africana DSM 8902]
Length = 188
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 80/178 (44%), Gaps = 14/178 (7%)
Query: 13 AEIVF--FDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
AEI FD ETT + ++EFGA+ R ++ SF L P + ++
Sbjct: 8 AEITLTAFDFETTGLHAGIDK--IVEFGAVQF--RDGQQVGSFEALCNPG--IPIHPDAA 61
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
R GIT E V P +EV + + V HN +FD ++ A E G P +
Sbjct: 62 RVSGITDEMVAGEPSVQEVLQQFIGFVGDSVLIAHN-AQFDLGFLRAALLEFGLP-DMKN 119
Query: 131 GMIDSLGVLTEKF-GRRAGNMKMATLASYFGL-GQQKHRSLDDVRMNLEVLKHCATVL 186
+ID+ + + F G+++ +++ L ++ G+ HR+ DD M + + A L
Sbjct: 120 QVIDTQKLAQKAFPGQKSYSLQ--NLVAFLGIPPNTAHRAKDDAYMCMRLFTAAADAL 175
>gi|306820890|ref|ZP_07454510.1| DNA polymerase III PolC [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|304551004|gb|EFM38975.1| DNA polymerase III PolC [Eubacterium yurii subsp. margaretiae ATCC
43715]
Length = 1398
Score = 48.1 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 53/196 (27%), Positives = 83/196 (42%), Gaps = 12/196 (6%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
+ FDLETT + + + E GAI V ++VE FS LI P+ + K + GI
Sbjct: 383 IVFDLETT--GFSNRNDAITEIGAIKVENGEIVE--EFSQLINPE--RPIPEKIQKLTGI 436
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
T E V P EV K + HN FD ++E +E P ID+
Sbjct: 437 TNEMVIDKPTISEVLPKFLDFCKDSILVAHN-SDFDTGFVREKASE--NNLPYDFDAIDT 493
Query: 136 LGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEV-LKHCATVLFLESSLP 193
+ +L+ N K+ T+A + + HR++DD ++ L + + +E
Sbjct: 494 V-ILSRLLMPDLKNHKLNTIAKELNVSLENHHRAVDDATATAQIFLNFISKLKAMEIENF 552
Query: 194 NTFNSNLQSSLTVTTR 209
N N ++S T R
Sbjct: 553 NEINEKIKSIDTSKIR 568
>gi|15673814|ref|NP_267989.1| DinG [Lactococcus lactis subsp. lactis Il1403]
gi|12724861|gb|AAK05930.1|AE006413_6 ATP-dependent helicase DinG [Lactococcus lactis subsp. lactis
Il1403]
Length = 794
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 58/105 (55%), Gaps = 7/105 (6%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLE T + + +++ G ++V ++VE +FST + P + + + S G++ +
Sbjct: 11 DLEATDAHSSENK--IIQIGIVLVEDGEIVE--TFSTEVNPHE--PLLPRISELTGLSDK 64
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
+++APEF EVA K+ +L V+ HN RFD ++++F G
Sbjct: 65 QLKTAPEFSEVAAKVRELLTDSVFVAHN-ARFDYGLLEKSFLNAG 108
>gi|403069957|ref|ZP_10911289.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Oceanobacillus sp. Ndiop]
Length = 941
Score = 48.1 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 15/171 (8%)
Query: 5 IPSQAAGTAEIVFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDL 62
+ S+ + V DLETT P + + ++E G +++ + ++ +T + P
Sbjct: 3 LESKVEKVDKFVVIDLETTGHSPSKNDK---IIEVGIVVI--ENDIITDTHATFLNPN-- 55
Query: 63 SAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEI 122
++ S+ GI+ E VE AP F E ADKI I HN+ FD + A
Sbjct: 56 QSIPPFISKLTGISDEDVEGAPLFYEKADKIIEIFQDSYLIAHNV-SFDLGFLNAELAAN 114
Query: 123 GKPAPV-PVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDD 171
G+ PV ID++ L+ +A + K+ LA Y + Q HR+L D
Sbjct: 115 GRERLTNPV--IDTVE-LSRILFPKAPSYKLGQLAEYLDIHHQDPHRALSD 162
>gi|417089795|ref|ZP_11955709.1| Rad3-related DNA helicase [Streptococcus suis R61]
gi|353533924|gb|EHC03563.1| Rad3-related DNA helicase [Streptococcus suis R61]
Length = 837
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 75/154 (48%), Gaps = 12/154 (7%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLE T G +++ G ++V ++++ S++T I P +L +K+ GIT +
Sbjct: 32 DLEAT---GTGADAKIIQIGIVLVENGEIID--SYATDINPYELLDDHIKN--LTGITDQ 84
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
+ AP+F +VA I+ ++ ++ HN+ +FD + EA G P +D++
Sbjct: 85 QLSQAPDFGQVASTIYDMIGDAIFVAHNV-KFDANLLAEALFFEGYELLTP--RVDTVE- 140
Query: 139 LTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDD 171
L++ F + LA + LG Q H ++ D
Sbjct: 141 LSQLFFPTFDKYSLGNLAEHLDLGLDQAHTAISD 174
>gi|417916418|ref|ZP_12559998.1| exonuclease DnaQ family/helicase DinG family [Streptococcus mitis
bv. 2 str. SK95]
gi|342829754|gb|EGU64100.1| exonuclease DnaQ family/helicase DinG family [Streptococcus mitis
bv. 2 str. SK95]
Length = 830
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 89/199 (44%), Gaps = 20/199 (10%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V DLE T G + +++ G +++ ++++ ++T + P + +K G+
Sbjct: 10 VVVDLEAT---STGSKAKIIQVGIVVIENGEIID--QYATDVNPHEPLDSHIKE--LTGL 62
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVP-VGMID 134
T + +APEF +VA KIF ++ ++ HN+ +FD + E G P V ++
Sbjct: 63 TDRRLAAAPEFSQVAGKIFELVKDGIFVAHNV-QFDANLLAEFLFFEGYELRTPRVDTVE 121
Query: 135 SLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHCATVLF------ 187
VL +F + + L G+ +Q H +L D + E+L + LF
Sbjct: 122 LAQVLYPQFEK----YNLGILCQELGIELEQAHTALSDAQATAELLLYMRQKLFELPKGL 177
Query: 188 LESSLPNTFNSNLQSSLTV 206
LES L N +S L +
Sbjct: 178 LESLLDLADNLLYESYLVI 196
>gi|387784291|ref|YP_006070374.1| DNA polymerase III, epsilon subunit:DnaQ exonuclease/DinG helicase
[Streptococcus salivarius JIM8777]
gi|338745173|emb|CCB95539.1| DNA polymerase III, epsilon subunit:DnaQ exonuclease/DinG helicase
[Streptococcus salivarius JIM8777]
Length = 828
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 94/216 (43%), Gaps = 28/216 (12%)
Query: 11 GTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK---DLSAVAL 67
T + DLE T A +++ G +I+ ++V+ F++ + P D V L
Sbjct: 5 NTNKYAIVDLEAT---SASSTASIIQVGIVIMQNGQVVD--EFASDVNPHQELDEHIVHL 59
Query: 68 KSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAP 127
GIT + + AP+F E+A IF ++ G ++ HN+ +FD + EA G
Sbjct: 60 T-----GITDQQLAQAPDFSEIARTIFELIEGCIFVAHNV-KFDANLLAEALFMEGFELR 113
Query: 128 VPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHCATVL 186
P +D++ L + F K++ L+ L Q H +++D R ++L H +
Sbjct: 114 TP--RVDTVE-LAQVFYPTFEQYKLSHLSKVLNLDLAQAHTAIEDARATGQLLFHLMDKI 170
Query: 187 FLESSLPN-------TFNSNLQSSLTVTTRSRSNGK 215
+SLP TF+ NL + R G+
Sbjct: 171 ---ASLPRQTIEMLLTFSDNLLFETELVIRDAIRGQ 203
>gi|304406144|ref|ZP_07387801.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus
curdlanolyticus YK9]
gi|304344728|gb|EFM10565.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus
curdlanolyticus YK9]
Length = 223
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 75/168 (44%), Gaps = 19/168 (11%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCP--RKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ +DLE TV R+ ++E GA+ + + +E++ F T +KP+ + ++
Sbjct: 5 IVYDLEFTVLRKQQYAADIIEIGAVKLTDGDQGPIEIDRFQTYVKPERNKVITTHTTEFT 64
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCA---RIKEAFAEIGKPAPVPV 130
GIT+E V++AP F + D R W G + + C+ K+ F + + +
Sbjct: 65 GITQEQVDAAPTFPDAIDLF------RQWIG-DTTYYLCSWGPDDKQHFVRQCRDMKIEL 117
Query: 131 GMIDSLGVLTEKFGRRAGN-------MKMATLASYFGLGQQKHRSLDD 171
+ ++ L + + GN + A + F +HR+LDD
Sbjct: 118 NWLRNMNDLQLYYTKLQGNDASKRIGLARALETAGFVFDGAQHRALDD 165
>gi|387784719|ref|YP_006070802.1| DNA polymerase III subunit epsilon [Streptococcus salivarius
JIM8777]
gi|338745601|emb|CCB95967.1| DNA polymerase III, epsilon chain [Streptococcus salivarius
JIM8777]
Length = 196
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 20/140 (14%)
Query: 49 ELESFSTLIKPKDLSAVALKS--SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHN 106
E++ F + + S V L+S + GIT + + AP+ E V S + G+N
Sbjct: 36 EVDQFDSFV----YSDVPLQSFINGLTGITADKIAKAPKLESVLTDFKSFVGDTPLIGYN 91
Query: 107 IRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAG------NMKMATLASYFG 160
+ D + E ++ + +L V E F RRA N+K+ ++A +FG
Sbjct: 92 ALKSDLPILSENGLDLEEQY--------ALDVFDEAFDRRASDLNGIVNLKLTSVADFFG 143
Query: 161 LGQQKHRSLDDVRMNLEVLK 180
+ H SLDD RM ++ +
Sbjct: 144 IKGHGHNSLDDARMTAQIYE 163
>gi|384447736|ref|YP_005655787.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni IA3902]
gi|284925719|gb|ADC28071.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni IA3902]
Length = 256
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+E+T G+ +LE GA+ + K E+ F + +K K++ + GIT E
Sbjct: 76 DIESTGGVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPK---NITELTGITYE 127
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
VE+A +V L ++ HN+R FD + I +A E G G++ + +
Sbjct: 128 MVENASSLAKVLSDFRLFLKDSIFVAHNVR-FDYSFISKALNECG------FGILLNRRI 180
Query: 139 LTEKFGR---RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
T +F + + K+ L + G+ HR+LDD E+ K+C
Sbjct: 181 CTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDALAAAEIFKYC 227
>gi|395785268|ref|ZP_10465000.1| DNA polymerase III, epsilon subunit [Bartonella tamiae Th239]
gi|423717833|ref|ZP_17692023.1| DNA polymerase III, epsilon subunit [Bartonella tamiae Th307]
gi|395424815|gb|EJF90986.1| DNA polymerase III, epsilon subunit [Bartonella tamiae Th239]
gi|395427233|gb|EJF93349.1| DNA polymerase III, epsilon subunit [Bartonella tamiae Th307]
Length = 234
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 71/164 (43%), Gaps = 8/164 (4%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
+ FD ETT + R ++E G + + R L ++F + P+ + + + G+
Sbjct: 4 IIFDTETTGLHKESDR--IVEIGCVEMVDRYLTG-KTFHVYLNPQGV-LIPDEVVAVHGL 59
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
T E ++ P F+E+AD + G HN FD + + KP ++D+
Sbjct: 60 TNERLKDEPIFDEIADDFLDFIEGATLIAHNA-SFDLGFLNAELERVKKPLISVDRILDT 118
Query: 136 LGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
L + K+ G + L FG+ HR+L ++ E+L
Sbjct: 119 LAMARRKYP--MGPNSLDALCKRFGI-DNSHRTLHGALLDSEIL 159
>gi|115375897|ref|ZP_01463146.1| DNA polymerase III PolC-type, putative [Stigmatella aurantiaca
DW4/3-1]
gi|310819816|ref|YP_003952174.1| exonuclease [Stigmatella aurantiaca DW4/3-1]
gi|115367075|gb|EAU66061.1| DNA polymerase III PolC-type, putative [Stigmatella aurantiaca
DW4/3-1]
gi|309392888|gb|ADO70347.1| Exonuclease [Stigmatella aurantiaca DW4/3-1]
Length = 219
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 72/172 (41%), Gaps = 6/172 (3%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+ F DLETT R VLE + V R L L + ++P L+ ++ G
Sbjct: 31 LAFIDLETT--GLDASRHEVLEVAILRVDARSLKVLAEYEARVQPTRLADAHPEALAVCG 88
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAP-VPVGMI 133
+ E A EV + +L G + AGHN FD + E + P P V +
Sbjct: 89 YSDEEWRDALPLREVLATVTPLLAGTLVAGHNT-SFDWGFLVEGYRSTELPLPSVDYHRL 147
Query: 134 DSLGVLTEKFGR-RAGNMKMATLASYFGLGQ-QKHRSLDDVRMNLEVLKHCA 183
D+ + ++ + LA +FGL + HR++ D R LEV + A
Sbjct: 148 DTASLAWPLLATGEVESLSLNALAKHFGLHRPTPHRAMADARCALEVARRLA 199
>gi|170017004|ref|YP_001727923.1| Rad3-related DNA helicase [Leuconostoc citreum KM20]
gi|414596483|ref|ZP_11446058.1| ATP-dependent helicase DinG [Leuconostoc citreum LBAE E16]
gi|169803861|gb|ACA82479.1| Rad3-related DNA helicase [Leuconostoc citreum KM20]
gi|390482945|emb|CCF28119.1| ATP-dependent helicase DinG [Leuconostoc citreum LBAE E16]
Length = 801
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 21/176 (11%)
Query: 16 VFFDLETTVPRRA-GQRFWVLEFGAIIVCPRKLVE-LESFSTLIKPKDLSAVALKSSRCD 73
V DLETT A G R +++ G + R++++ ESF +P D + +
Sbjct: 8 VVVDLETTGQSVAKGGR--IIQIGMTFIKNRRIIDHFESFVNPAQPIDRNI-----QQLT 60
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
I+++ V++AP FEE+A I ++L V HN+ FD + + FA G P + I
Sbjct: 61 HISQKEVKNAPYFEEIAPVIQNLLTDTVIIAHNV-NFDYPYLNDEFARTGFPE-LTNAAI 118
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHCATVLFL 188
D++ L + A ++ L +Y + HR+ D H +LFL
Sbjct: 119 DTVQ-LAQILLPTAPGYRLLDLTTYLNITLNNAHRANADA--------HATALLFL 165
>gi|420151740|ref|ZP_14658836.1| exonuclease [Actinomyces massiliensis F0489]
gi|394766302|gb|EJF47417.1| exonuclease [Actinomyces massiliensis F0489]
Length = 309
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 103/246 (41%), Gaps = 27/246 (10%)
Query: 2 DGFIPSQAAG---TAEIVF--FDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTL 56
D P+ +G TAE+ + DLETT A ++E G +++ P + S+STL
Sbjct: 69 DTATPATVSGPMSTAEVGYAVIDLETTGLSPAADS--IIEVGIVLLDPDGATQ-RSWSTL 125
Query: 57 IKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIK 116
+ P ++V + + G+ E + AP E+AD + L GR HN RFD +
Sbjct: 126 VDPG--ASVDVGPTFIHGLVAEDLIGAPALPEIADLLVRDLAGRAVVAHNA-RFDVGFLT 182
Query: 117 EAFAEIG---KPAPVPVGMIDSLGVLTEKFGRR---AGNMKMATLASYFGLGQQKHR-SL 169
+A +G + A +P V T + R + ++ T G+ H +L
Sbjct: 183 QALGALGRLNRGARIPR-------VCTMELARSYITTPSRRLVTCCESAGVRIGSHHCAL 235
Query: 170 DDVRMNLEVLKHCATVLFLESSLPNTFNSNLQSSLTVTTRSRSNGKLPCREETSRKSPPI 229
DD +L+H +V P ++ +L+S+ T + R + R +P
Sbjct: 236 DDAHACAGLLRHYMSVGHERGDDPVAWSRSLESAAAFTAWTWDEAA--ARTQEDRLTPRA 293
Query: 230 SLGYQR 235
G R
Sbjct: 294 GDGVPR 299
>gi|383788669|ref|YP_005473238.1| hypothetical protein CSE_10090 [Caldisericum exile AZM16c01]
gi|381364306|dbj|BAL81135.1| hypothetical protein CSE_10090 [Caldisericum exile AZM16c01]
Length = 678
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ VFFDLETT R + V+E GAI V ++V +F TL++P +++ +
Sbjct: 2 KFVFFDLETTGLNRDDE---VIEIGAIKVVDFEIV--STFKTLVRPH--KSISRFITNLT 54
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT E ++ A E +V + + + HN A + F E P+ ++
Sbjct: 55 GITLEDLDKAQERNKVKEDFKKFIEDSILVAHN------ASFDKEFLERFLEEPLQNEVV 108
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLK 180
D+L L + + L L ++K HR+ +D M E+ K
Sbjct: 109 DTLE-LARLIYPELSSHSLEKLVQTLNLKKEKAHRAFNDALMLYELFK 155
>gi|238062933|ref|ZP_04607642.1| DNA polymerase III, epsilon subunit [Micromonospora sp. ATCC 39149]
gi|237884744|gb|EEP73572.1| DNA polymerase III, epsilon subunit [Micromonospora sp. ATCC 39149]
Length = 286
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 23/175 (13%)
Query: 11 GTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKP-KDLSAVALKS 69
G V D+ETT R ++E + + ++V+ ++TL+ P +D +
Sbjct: 33 GEVPFVVVDVETTGLSSTSDR--IVEIALVRIEGGRVVD--EWATLVDPGRDPDPTFVHH 88
Query: 70 SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG-KPAPV 128
IT E + AP F +VA +I S L+G V HN RF+ I + FA +G AP+
Sbjct: 89 -----ITAEMLSGAPTFADVAGEILSRLDGAVVVAHNA-RFEEGFIAQEFARVGISTAPL 142
Query: 129 PVGMIDSLGVLTEKFGRR---AGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
P V T + R+ A N ++ + + +G+ H +L D R ++L
Sbjct: 143 P-------AVCTLRLARQVLAAPNFQLVSCCTVYGIELHDAHTALGDTRATAQLL 190
>gi|395244657|ref|ZP_10421612.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
hominis CRBIP 24.179]
gi|394483010|emb|CCI82620.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
hominis CRBIP 24.179]
Length = 935
Score = 48.1 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 6/93 (6%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT +R Q +++FG I+ RK+V+ SF LI P + L GI E
Sbjct: 14 DLETTGTQRQ-QNDRIIQFGCAIIKKRKVVKTYSF--LINPH--KEIPLSVENLTGIKNE 68
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFD 111
V+SA +F+ A +I IL+ +++ HN+ FD
Sbjct: 69 DVKSAHDFKFYAKRIRRILDKKIFVAHNV-NFD 100
>gi|296127268|ref|YP_003634520.1| DNA polymerase III subunit epsilon [Brachyspira murdochii DSM
12563]
gi|296019084|gb|ADG72321.1| DNA polymerase III, epsilon subunit [Brachyspira murdochii DSM
12563]
Length = 252
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 13/165 (7%)
Query: 13 AEIVFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
A D+ETT PR ++E GAI K E++ FSTL+K + + S
Sbjct: 59 ANYTIIDVETTGLKPREDK----IIEIGAIKYRDNK--EIDYFSTLVK---VDYIPNFIS 109
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
IT + V++AP +E + + + + G+N+ FD + +A E+ +
Sbjct: 110 SYTNITNKMVKNAPRVDEAIKQFYDFVGDDILVGYNV-PFDIKFLYDALYEVSNGELLLN 168
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRM 174
+ + ++ + N K T+ASY+ + HR++ D ++
Sbjct: 169 NDFIDVMYIAKRVLKDLENYKQVTVASYYNISIDNLHRAMGDCKL 213
>gi|433632806|ref|YP_007266434.1| Putative DNA Polymerase III (epsilon subunit) DnaQ [Mycobacterium
canettii CIPT 140070010]
gi|432164399|emb|CCK61855.1| Putative DNA Polymerase III (epsilon subunit) DnaQ [Mycobacterium
canettii CIPT 140070010]
Length = 329
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 16/134 (11%)
Query: 51 ESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRF 110
+S +L+ P V + G+T ++ P+F ++A ++ +L GR HN+ F
Sbjct: 49 QSVVSLLNP----GVDPGPTHVHGLTAAMLDDQPQFADIAGEVVDVLRGRTLVAHNV-GF 103
Query: 111 DCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRR----AGNMKMATLASYFGLGQQK- 165
D A + PV M T + RR N+++ TLA+++G+ QQ+
Sbjct: 104 DYAFLAAEAEIAEAELPVDFVMC------TVELARRLQLGVDNLRLETLAAHWGVPQQRP 157
Query: 166 HRSLDDVRMNLEVL 179
H + DD R+ +L
Sbjct: 158 HDAFDDARVLTGIL 171
>gi|421878142|ref|ZP_16309625.1| ATP-dependent helicase DinG [Leuconostoc citreum LBAE C11]
gi|390448017|emb|CCF25745.1| ATP-dependent helicase DinG [Leuconostoc citreum LBAE C11]
Length = 801
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 21/176 (11%)
Query: 16 VFFDLETTVPRRA-GQRFWVLEFGAIIVCPRKLVE-LESFSTLIKPKDLSAVALKSSRCD 73
V DLETT A G R +++ G + R++++ ESF +P D + +
Sbjct: 8 VVVDLETTGQSVAKGGR--IIQIGMTFIKNRRIIDHFESFVNPAQPIDRNI-----QQLT 60
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
I+++ V++AP FEE+A I ++L V HN+ FD + + FA G P + I
Sbjct: 61 HISQKEVKNAPYFEEIAPVIQNLLTDTVIIAHNV-NFDYPYLNDEFARTGFPE-LTNAAI 118
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHCATVLFL 188
D++ L + A ++ L +Y + HR+ D H +LFL
Sbjct: 119 DTVQ-LAQILLPTAPGYRLLDLTTYLNITLNNAHRANADA--------HATALLFL 165
>gi|373856605|ref|ZP_09599349.1| DnaQ family exonuclease/DinG family helicase [Bacillus sp. 1NLA3E]
gi|372453584|gb|EHP27051.1| DnaQ family exonuclease/DinG family helicase [Bacillus sp. 1NLA3E]
Length = 934
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 10/104 (9%)
Query: 16 VFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
V DLETT P+R + +++F A+++ K+ E FS+L+ P+ +
Sbjct: 6 VVIDLETTGNSPKRGDK---IIQFAAVVINNGKITE--QFSSLVNPQ--QKIPAFIEELT 58
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKE 117
G+ E V+SAP F E+A+ + +L + HN+ FD + ++E
Sbjct: 59 GLNDEMVKSAPLFSEIAETVAKMLEDAYFVAHNV-LFDLSFLQE 101
>gi|149371249|ref|ZP_01890735.1| DNA Pol III Epsilon Chain [unidentified eubacterium SCB49]
gi|149355387|gb|EDM43946.1| DNA Pol III Epsilon Chain [unidentified eubacterium SCB49]
Length = 257
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 58/125 (46%), Gaps = 12/125 (9%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
I FFDLETT A R ++E + V P ESF + P + +S G
Sbjct: 9 ICFFDLETTGINIAKDR--IVEIAILKVFPNG--NKESFVWKVNPT--IPIPKVTSDIHG 62
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAF--AEIG----KPAPV 128
IT E V + P F+E+A K+F+++ AG N RFD + E AEI K A V
Sbjct: 63 ITDEMVVNEPTFKELAPKVFALIKDSDLAGFNSNRFDIPLLAEELLRAEIDYDLKKAASV 122
Query: 129 PVGMI 133
V I
Sbjct: 123 DVQTI 127
>gi|126435878|ref|YP_001071569.1| hypothetical protein Mjls_3300 [Mycobacterium sp. JLS]
gi|126235678|gb|ABN99078.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. JLS]
Length = 630
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 73/172 (42%), Gaps = 19/172 (11%)
Query: 16 VFFDLETTVPRRAGQR-FWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
V DLETT R G+R + E GA+ V R L +TL+ P A+ + G
Sbjct: 31 VVVDLETTGGRATGERPDAITEIGAVKV--RGGEVLGELATLVDPG--RAIPPQIVSLTG 86
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
IT V +AP E V G V HN FD ++ A + G P P +
Sbjct: 87 ITTAMVCAAPRIESVLPAFLEFARGSVLVAHNA-GFDIGFLRAAAEQCGLTWPRPPVLC- 144
Query: 135 SLGVLTEKFGRR------AGNMKMATLASYF-GLGQQKHRSLDDVRMNLEVL 179
T K RR A +++++ LA F HR+LDD R ++VL
Sbjct: 145 -----TVKLARRVLTRDEAPSVRLSALAQLFRAKTTPTHRALDDARATVDVL 191
>gi|333992634|ref|YP_004525248.1| DNA polymerase III subunit epsilon [Mycobacterium sp. JDM601]
gi|333488602|gb|AEF37994.1| DNA polymerase III (epsilon subunit) DnaQ [Mycobacterium sp.
JDM601]
Length = 329
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 70 SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVP 129
+ G+T E + P+F +V D++ ++L GR HN+ FD + G PV
Sbjct: 64 THVHGLTAEMLAGQPQFADVVDEVAALLAGRTLVAHNV-AFDYTFLAAEAEMAGAELPVD 122
Query: 130 VGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLK 180
M LT + N+++ TLA+++G+ Q + H +LDD R+ VL+
Sbjct: 123 SVMCTL--ELTRRLDLGLANLRLQTLAAHWGVVQTRAHDALDDARVLAGVLE 172
>gi|149010360|ref|ZP_01831731.1| exonuclease [Streptococcus pneumoniae SP19-BS75]
gi|303254460|ref|ZP_07340566.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS455]
gi|303259905|ref|ZP_07345880.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
SP-BS293]
gi|303262320|ref|ZP_07348264.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
SP14-BS292]
gi|303264742|ref|ZP_07350660.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS397]
gi|303267563|ref|ZP_07353409.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS457]
gi|303269154|ref|ZP_07354933.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS458]
gi|387759244|ref|YP_006066222.1| putative exonuclease [Streptococcus pneumoniae INV200]
gi|418139341|ref|ZP_12776171.1| exonuclease family protein [Streptococcus pneumoniae GA13338]
gi|418180452|ref|ZP_12817023.1| exonuclease family protein [Streptococcus pneumoniae GA41688]
gi|418200161|ref|ZP_12836606.1| exonuclease family protein [Streptococcus pneumoniae GA47976]
gi|419514547|ref|ZP_14054174.1| exonuclease family protein [Streptococcus pneumoniae England14-9]
gi|419523338|ref|ZP_14062918.1| exonuclease family protein [Streptococcus pneumoniae GA13723]
gi|421296015|ref|ZP_15746727.1| exonuclease [Streptococcus pneumoniae GA58581]
gi|147764841|gb|EDK71770.1| exonuclease [Streptococcus pneumoniae SP19-BS75]
gi|301801833|emb|CBW34546.1| putative exonuclease [Streptococcus pneumoniae INV200]
gi|302598627|gb|EFL65667.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS455]
gi|302636643|gb|EFL67134.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
SP14-BS292]
gi|302639110|gb|EFL69570.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
SP-BS293]
gi|302641341|gb|EFL71709.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS458]
gi|302642912|gb|EFL73213.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS457]
gi|302645829|gb|EFL76058.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae BS397]
gi|353846064|gb|EHE26102.1| exonuclease family protein [Streptococcus pneumoniae GA41688]
gi|353865208|gb|EHE45117.1| exonuclease family protein [Streptococcus pneumoniae GA47976]
gi|353905584|gb|EHE81007.1| exonuclease family protein [Streptococcus pneumoniae GA13338]
gi|379558069|gb|EHZ23106.1| exonuclease family protein [Streptococcus pneumoniae GA13723]
gi|379637643|gb|EIA02196.1| exonuclease family protein [Streptococcus pneumoniae England14-9]
gi|395897228|gb|EJH08192.1| exonuclease [Streptococcus pneumoniae GA58581]
Length = 196
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 26/161 (16%)
Query: 49 ELESFSTLIKPKDLSAVALKS--SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHN 106
E++++ + + ++V LKS + GIT E ++ AP E+V ++ + + G+N
Sbjct: 36 EIDAYDSYVH----TSVPLKSFINGLTGITAETLKDAPPVEKVLEEFQEFVGSLLMIGYN 91
Query: 107 IRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRA------GNMKMATLASYFG 160
+ D + E + + V + E F RR+ N+K+ T+AS+ G
Sbjct: 92 AAKSDLPILAEHGLDYSQQYKVDL--------YDEAFERRSSDLHGIANLKLQTVASFLG 143
Query: 161 LGQQKHRSLDDVRMNLEVLK------HCATVLFLESSLPNT 195
Q H SL+D RM V + +L ESSL N
Sbjct: 144 FQGQSHNSLEDARMTARVYESFLESDQARELLETESSLSNN 184
>gi|418187001|ref|ZP_12823530.1| exonuclease family protein [Streptococcus pneumoniae GA47360]
gi|353852826|gb|EHE32812.1| exonuclease family protein [Streptococcus pneumoniae GA47360]
Length = 196
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 26/161 (16%)
Query: 49 ELESFSTLIKPKDLSAVALKS--SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHN 106
E++++ + + ++V LKS + GIT E ++ AP E+V ++ + + G+N
Sbjct: 36 EIDAYDSYVH----TSVPLKSFINGLTGITAETLKDAPPVEKVLEEFQEFVGSLLMIGYN 91
Query: 107 IRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRA------GNMKMATLASYFG 160
+ D + E + + V + E F RR+ N+K+ T+AS+ G
Sbjct: 92 ATKSDLPILAEHGLDYSQQYKVDL--------YDEAFERRSSDLHGIANLKLQTVASFLG 143
Query: 161 LGQQKHRSLDDVRMNLEVLK------HCATVLFLESSLPNT 195
Q H SL+D RM V + +L ESSL N
Sbjct: 144 FQGQSHNSLEDARMTARVYESFLESDQARELLETESSLSNN 184
>gi|262204572|ref|YP_003275780.1| exonuclease RNase T and DNA polymerase III [Gordonia bronchialis
DSM 43247]
gi|262087919|gb|ACY23887.1| Exonuclease RNase T and DNA polymerase III [Gordonia bronchialis
DSM 43247]
Length = 590
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 13/172 (7%)
Query: 11 GTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK-DLSAVALKS 69
G + V D+ETT +R VL + + VE E ++TL+ P D V + +
Sbjct: 6 GKSGWVLVDVETT--GTNARRDRVLSLATMTLDYDGRVEDE-YATLLNPGCDPGPVHIHN 62
Query: 70 SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVP 129
+TR+ + AP F+ + +L GR HN FD + E +G A +P
Sbjct: 63 -----LTRDRLHGAPTFDVTMSPLQQMLAGRTMVAHNA-TFDHGFLVEEARRLG--ATLP 114
Query: 130 VGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLK 180
+ L + N+K+ TLA+Y+G+ Q+ H + DDVR EV +
Sbjct: 115 IDHRLCTVTLARRLQLDVPNVKLGTLATYWGIRQRAAHDARDDVRTLAEVFR 166
>gi|225850145|ref|YP_002730379.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1]
gi|225645024|gb|ACO03210.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1]
Length = 205
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 7/132 (5%)
Query: 50 LESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
L+ F +LIKP ++ + S+ GIT V P ++V + + + GHNI R
Sbjct: 42 LDRFWSLIKP-EIELIPEHISKLTGITTAMVIDQPTVDKVLPDFLNFIENTILVGHNI-R 99
Query: 110 FDCARIKEAFAEI-GKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGL-GQQKHR 167
FD A + + EI K P D L K + +A++A +F + ++HR
Sbjct: 100 FDLAFLNKKAKEILNKTIKNPFICTDHLA---RKILSDIDSKSLASIAQHFNIPFSRQHR 156
Query: 168 SLDDVRMNLEVL 179
++ D +NLE+
Sbjct: 157 AMYDAEVNLEIF 168
>gi|163755942|ref|ZP_02163059.1| putative DNA polymerase III epsilon chain [Kordia algicida OT-1]
gi|161324113|gb|EDP95445.1| putative DNA polymerase III epsilon chain [Kordia algicida OT-1]
Length = 257
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
I FFDLETT A R ++E + V P ES + L+ P+ + ++S G
Sbjct: 9 ICFFDLETTGVEVAKDR--IVEIAILKVYPNG--NKESKTWLVNPE--MPIPAETSEIHG 62
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKE 117
IT + V + P F+E++ +I++++ AG+N RFD + E
Sbjct: 63 ITDDKVANEPTFKELSKEIYNMIKDSDLAGYNSDRFDIPLLAE 105
>gi|357237757|ref|ZP_09125097.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus ictaluri 707-05]
gi|356753506|gb|EHI70616.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus ictaluri 707-05]
Length = 819
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 78/163 (47%), Gaps = 12/163 (7%)
Query: 12 TAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
T + DLE T AG +++ G +I+ +++V S+ T + P + +K +
Sbjct: 6 TKKYAVIDLEAT---NAGPNAAIIQVGIVIIEGKEIVH--SYQTDVNPHQPLSDHIK--Q 58
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GIT + ++ AP+F +VA IF ++ V+ HN+ +FD + EA G P
Sbjct: 59 LTGITDKQLQKAPDFSQVAKPIFDLIEDCVFVAHNV-KFDANLLAEALFFEGYDLLTP-- 115
Query: 132 MIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVR 173
+D++ L + F ++ L+ GL Q+ H ++ D +
Sbjct: 116 RVDTVE-LAQVFYPTLEKYNLSHLSKELGLQLQEAHTAIADAQ 157
>gi|154148582|ref|YP_001406342.1| DNA polymerase III subunit epsilon [Campylobacter hominis ATCC
BAA-381]
gi|153804591|gb|ABS51598.1| DNA polymerase III subunit epsilon [Campylobacter hominis ATCC
BAA-381]
Length = 262
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 20/178 (11%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
A+ F D+ET GQ ++E GAI V +++ L +F T + ++ ++ +
Sbjct: 73 ADFCFVDIETNGGIDKGQ---IIEIGAIKVRAKEI--LNTFKTFVYASNIPENIVELT-- 125
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVP--V 130
GI +++AP V + L V+ HN++ FD I E+ +IG + +
Sbjct: 126 -GIHTNDLKNAPHLSNVLENFRLFLGDSVFVAHNVK-FDYGFISESLQKIGFGGLLNRRI 183
Query: 131 GMID--SLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVL 186
ID + +K+G +++L G+ + HR+ D E+ K C L
Sbjct: 184 DTIDLAKRTIAAQKYG-------LSSLKELLGIENEHHRAFSDALSCYEIFKFCTQKL 234
>gi|417686428|ref|ZP_12335706.1| exonuclease family protein [Streptococcus pneumoniae GA41301]
gi|332076265|gb|EGI86731.1| exonuclease family protein [Streptococcus pneumoniae GA41301]
Length = 196
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 26/161 (16%)
Query: 49 ELESFSTLIKPKDLSAVALKS--SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHN 106
E++++ + + ++V LKS + GIT E ++ AP E+V ++ + + G+N
Sbjct: 36 EIDAYDSYVH----TSVPLKSFINGLTGITAETLKDAPPVEKVLEEFQEFVGSLLMIGYN 91
Query: 107 IRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRA------GNMKMATLASYFG 160
+ D + E + + V + E F RR+ N+K+ T+AS+ G
Sbjct: 92 AAKSDLPILAEHGLDYNQQYKVDL--------YDEAFERRSSDLHGIANLKLQTVASFLG 143
Query: 161 LGQQKHRSLDDVRMNLEVLK------HCATVLFLESSLPNT 195
Q H SL+D RM V + +L ESSL N
Sbjct: 144 FQGQSHNSLEDARMTARVYESFLESDQARELLETESSLSNN 184
>gi|419631236|ref|ZP_14163830.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 23264]
gi|419685760|ref|ZP_14214275.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1577]
gi|380611116|gb|EIB30674.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 23264]
gi|380662384|gb|EIB78127.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1577]
Length = 253
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+E+T G+ +LE GA+ + K E+ F + +K K++ + GIT E
Sbjct: 76 DIESTGGVSKGE---ILEIGAVKIQNSK--EIGRFQSFVKVKEIPK---NITELTGITYE 127
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGV 138
VE+A +V L ++ HN+R FD + I +A E G G++ + +
Sbjct: 128 MVENASSLAKVLSDFRLFLKDSIFVAHNVR-FDYSFISKALNECG------FGILLNRRI 180
Query: 139 LTEKFGR---RAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
T +F + + K+ L + G+ HR+LDD E+ K+C
Sbjct: 181 CTIEFAQCCIESPKYKLEVLKEFLGVENMHHRALDDALAAAEIFKYC 227
>gi|359767262|ref|ZP_09271053.1| DNA polymerase III epsilon subunit [Gordonia polyisoprenivorans
NBRC 16320]
gi|359315377|dbj|GAB23886.1| DNA polymerase III epsilon subunit [Gordonia polyisoprenivorans
NBRC 16320]
Length = 609
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 73/172 (42%), Gaps = 20/172 (11%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
IV DLETT A R + E GA+ V R L F+TL+ P+ ++ + G
Sbjct: 34 IVVVDLETTGGDPA--RDAITEIGAVKV--RGGEVLGEFATLVDPQ--RSIPPQIVALTG 87
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
IT V AP+ EV G + HN RFD ++ A + P +
Sbjct: 88 ITSAMVYDAPQIGEVLSSFVEFARGCLLVAHNA-RFDMGFLRHNAARLDLAWPFHTSLC- 145
Query: 135 SLGVLTEKFGRR------AGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
T + RR A +++ LA F + + HR+LDD R +EVL
Sbjct: 146 -----TVRLARRVLTRDEAPTVRLGALADLFDVSVRPTHRALDDARATVEVL 192
>gi|221231753|ref|YP_002510905.1| exonuclease [Streptococcus pneumoniae ATCC 700669]
gi|415698199|ref|ZP_11457110.1| exonuclease family protein [Streptococcus pneumoniae 459-5]
gi|415749395|ref|ZP_11477339.1| exonuclease family protein [Streptococcus pneumoniae SV35]
gi|415752079|ref|ZP_11479190.1| exonuclease family protein [Streptococcus pneumoniae SV36]
gi|418123266|ref|ZP_12760200.1| exonuclease family protein [Streptococcus pneumoniae GA44378]
gi|418127852|ref|ZP_12764748.1| exonuclease family protein [Streptococcus pneumoniae NP170]
gi|418137029|ref|ZP_12773871.1| exonuclease family protein [Streptococcus pneumoniae GA11663]
gi|418178026|ref|ZP_12814610.1| exonuclease family protein [Streptococcus pneumoniae GA41565]
gi|419473059|ref|ZP_14012910.1| exonuclease family protein [Streptococcus pneumoniae GA13430]
gi|220674213|emb|CAR68744.1| putative exonuclease [Streptococcus pneumoniae ATCC 700669]
gi|353797353|gb|EHD77688.1| exonuclease family protein [Streptococcus pneumoniae GA44378]
gi|353800313|gb|EHD80627.1| exonuclease family protein [Streptococcus pneumoniae NP170]
gi|353844800|gb|EHE24843.1| exonuclease family protein [Streptococcus pneumoniae GA41565]
gi|353901656|gb|EHE77188.1| exonuclease family protein [Streptococcus pneumoniae GA11663]
gi|379552566|gb|EHZ17655.1| exonuclease family protein [Streptococcus pneumoniae GA13430]
gi|381309775|gb|EIC50608.1| exonuclease family protein [Streptococcus pneumoniae SV36]
gi|381317204|gb|EIC57934.1| exonuclease family protein [Streptococcus pneumoniae 459-5]
gi|381317689|gb|EIC58414.1| exonuclease family protein [Streptococcus pneumoniae SV35]
Length = 196
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 26/161 (16%)
Query: 49 ELESFSTLIKPKDLSAVALKS--SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHN 106
E++++ + + ++V LKS + GIT E ++ AP E+V ++ + + G+N
Sbjct: 36 EIDAYDSYVH----TSVPLKSFINGLTGITAETLKDAPPVEKVLEEFQEFVGSLLMIGYN 91
Query: 107 IRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRA------GNMKMATLASYFG 160
+ D + E + + V + E F RR+ N+K+ T+AS+ G
Sbjct: 92 AAKSDLPILAEHGLDYSQQYKVDL--------YDEAFERRSSDLHGIANLKLQTVASFLG 143
Query: 161 LGQQKHRSLDDVRMNLEVLK------HCATVLFLESSLPNT 195
Q H SL+D RM V + +L ESSL N
Sbjct: 144 FQGQSHNSLEDARMTARVYESFLESDQARELLETESSLSNN 184
>gi|124002035|ref|ZP_01686889.1| DNA polymerase III, epsilon subunit [Microscilla marina ATCC 23134]
gi|123992501|gb|EAY31846.1| DNA polymerase III, epsilon subunit [Microscilla marina ATCC 23134]
Length = 463
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 50 LESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
++SF +L+ P+ ++ + ++ GIT + V +AP+F E+A I +I G V+ HN
Sbjct: 33 VDSFHSLVNPE--CYISDRITQITGITNDMVANAPKFYEIAKDILAITEGTVFVAHNA-H 89
Query: 110 FDCARIKEAFAEIG 123
FD ++E F +G
Sbjct: 90 FDYGFVREEFKALG 103
>gi|148998570|ref|ZP_01826010.1| exonuclease [Streptococcus pneumoniae SP11-BS70]
gi|225856651|ref|YP_002738162.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae P1031]
gi|307067654|ref|YP_003876620.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease
[Streptococcus pneumoniae AP200]
gi|387626344|ref|YP_006062519.1| putative exonuclease [Streptococcus pneumoniae INV104]
gi|410476432|ref|YP_006743191.1| DNA-directed DNA polymerase III subunit epsilon [Streptococcus
pneumoniae gamPNI0373]
gi|417693912|ref|ZP_12343101.1| exonuclease family protein [Streptococcus pneumoniae GA47901]
gi|419493129|ref|ZP_14032856.1| exonuclease family protein [Streptococcus pneumoniae GA47210]
gi|421304941|ref|ZP_15755597.1| exonuclease [Streptococcus pneumoniae GA62331]
gi|421314159|ref|ZP_15764749.1| exonuclease [Streptococcus pneumoniae GA47562]
gi|444382140|ref|ZP_21180344.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
PCS8106]
gi|444384831|ref|ZP_21182922.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
PCS8203]
gi|444388394|ref|ZP_21186379.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
PCS125219]
gi|444389874|ref|ZP_21187789.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
PCS70012]
gi|444393355|ref|ZP_21191007.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
PCS81218]
gi|444395892|ref|ZP_21193431.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
PNI0002]
gi|444397453|ref|ZP_21194936.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
PNI0006]
gi|444400780|ref|ZP_21198150.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
PNI0007]
gi|444402307|ref|ZP_21199475.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
PNI0008]
gi|444405957|ref|ZP_21202791.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
PNI0009]
gi|444408668|ref|ZP_21205301.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
PNI0010]
gi|444409428|ref|ZP_21206020.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
PNI0076]
gi|444411652|ref|ZP_21207980.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
PNI0153]
gi|444416197|ref|ZP_21212392.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
PNI0199]
gi|444418801|ref|ZP_21214755.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
PNI0360]
gi|444421410|ref|ZP_21217139.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
PNI0427]
gi|444422338|ref|ZP_21217995.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
PNI0446]
gi|147755568|gb|EDK62615.1| exonuclease [Streptococcus pneumoniae SP11-BS70]
gi|225725179|gb|ACO21031.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae P1031]
gi|301794129|emb|CBW36537.1| putative exonuclease [Streptococcus pneumoniae INV104]
gi|306409191|gb|ADM84618.1| DNA polymerase III, epsilon subunit-like 3'-5' exonuclease
[Streptococcus pneumoniae AP200]
gi|332204995|gb|EGJ19060.1| exonuclease family protein [Streptococcus pneumoniae GA47901]
gi|379595167|gb|EHZ59976.1| exonuclease family protein [Streptococcus pneumoniae GA47210]
gi|395905603|gb|EJH16508.1| exonuclease [Streptococcus pneumoniae GA62331]
gi|395914659|gb|EJH25503.1| exonuclease [Streptococcus pneumoniae GA47562]
gi|406369377|gb|AFS43067.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
pneumoniae gamPNI0373]
gi|444249451|gb|ELU55941.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
PCS125219]
gi|444251591|gb|ELU58060.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
PCS8203]
gi|444253100|gb|ELU59559.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
PCS8106]
gi|444255893|gb|ELU62233.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
PNI0002]
gi|444256337|gb|ELU62675.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
PCS70012]
gi|444260110|gb|ELU66418.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
PNI0006]
gi|444261011|gb|ELU67318.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
PCS81218]
gi|444265250|gb|ELU71269.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
PNI0007]
gi|444266667|gb|ELU72606.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
PNI0008]
gi|444269495|gb|ELU75302.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
PNI0010]
gi|444270524|gb|ELU76282.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
PNI0009]
gi|444275549|gb|ELU81171.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
PNI0153]
gi|444277972|gb|ELU83459.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
PNI0199]
gi|444279466|gb|ELU84862.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
PNI0076]
gi|444280207|gb|ELU85580.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
PNI0360]
gi|444282548|gb|ELU87803.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
PNI0427]
gi|444288268|gb|ELU93165.1| DNA polymerase III, epsilon subunit [Streptococcus pneumoniae
PNI0446]
Length = 196
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 26/161 (16%)
Query: 49 ELESFSTLIKPKDLSAVALKS--SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHN 106
E++++ + + ++V LKS + GIT E ++ AP E+V ++ + + G+N
Sbjct: 36 EIDAYDSYVH----TSVPLKSFINGLTGITAETLKDAPPVEKVLEEFQEFVGSLLMIGYN 91
Query: 107 IRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRA------GNMKMATLASYFG 160
+ D + E + + V + E F RR+ N+K+ T+AS+ G
Sbjct: 92 AAKSDLPILAEHGLDYSQQYKVDL--------YDEAFERRSSDLHGIANLKLQTVASFLG 143
Query: 161 LGQQKHRSLDDVRMNLEVLK------HCATVLFLESSLPNT 195
Q H SL+D RM V + +L ESSL N
Sbjct: 144 FQGQSHNSLEDARMTARVYESFLESDQARELLETESSLSNN 184
>gi|115379647|ref|ZP_01466730.1| DNA polymerase III epsilon subunit [Stigmatella aurantiaca DW4/3-1]
gi|310819920|ref|YP_003952278.1| exonuclease [Stigmatella aurantiaca DW4/3-1]
gi|115363357|gb|EAU62509.1| DNA polymerase III epsilon subunit [Stigmatella aurantiaca DW4/3-1]
gi|309392992|gb|ADO70451.1| Exonuclease [Stigmatella aurantiaca DW4/3-1]
Length = 219
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 74/183 (40%), Gaps = 6/183 (3%)
Query: 4 FIPSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLS 63
PS + F DLETT R VLE + V R L L + ++P L+
Sbjct: 20 LFPSLPPHLRTLCFVDLETT--GLDASRHEVLEVAVLRVDARSLKVLAEYEARVQPTRLA 77
Query: 64 AVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
++ G + E A EEV + +L G + AGHN FD + E +
Sbjct: 78 DAHPEALAVCGYSDEEWRDALSLEEVLATVTPLLAGTLVAGHNT-SFDWGFLVEGYRRTA 136
Query: 124 KPAP-VPVGMIDSLGVLTEKFGR-RAGNMKMATLASYFGLGQ-QKHRSLDDVRMNLEVLK 180
P V +D+ + ++ + LA +FG+ + HR++ D R LEV +
Sbjct: 137 LTLPSVDYHRLDTASLAWPLLATGEVESLSLNALARHFGIHRPTPHRAMADARCALEVAR 196
Query: 181 HCA 183
A
Sbjct: 197 RLA 199
>gi|423686715|ref|ZP_17661523.1| DNA polymerase III subunit epsilon [Vibrio fischeri SR5]
gi|371494783|gb|EHN70381.1| DNA polymerase III subunit epsilon [Vibrio fischeri SR5]
Length = 223
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 12/158 (7%)
Query: 25 PRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAP 84
P G R ++E GA+ + RKL F IKP L + L++ GIT E + P
Sbjct: 7 PVYEGHR--IVEIGAVEIINRKLTG-NHFHVYIKPDRL--IDLEAIDVHGITDEFLYDKP 61
Query: 85 EFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGK---PAPVPVGMIDSLGVLTE 141
E++++ D+ + G HN FD + F+++ K + D+L + +
Sbjct: 62 EYKDIHDEFLEFIKGAELVAHN-APFDVGFMDYEFSKLNKLIGTTDQYCKITDTLAMAKK 120
Query: 142 KFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
F + N+ + L +G+ HR+L ++ E+L
Sbjct: 121 IFPGKRNNLDV--LCERYGI-DNSHRTLHGALLDAEIL 155
>gi|418046412|ref|ZP_12684500.1| DNA polymerase III, epsilon subunit [Mycobacterium rhodesiae JS60]
gi|353192082|gb|EHB57586.1| DNA polymerase III, epsilon subunit [Mycobacterium rhodesiae JS60]
Length = 329
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 11/157 (7%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V D+ET+ R R ++ A+ + P+ VE S +L+ P V + G+
Sbjct: 17 VVVDVETSGFRPGHAR--IISLAALALDPQGRVE-HSVVSLLNP----GVDPGPTHIHGL 69
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
T E +E P F ++A + +L+GR HN+ FD + + AE+ A +PV +
Sbjct: 70 TAEMLEDQPTFADIAPDVIDLLHGRTLVAHNV-AFDYSFLASE-AELAGTA-LPVDTVMC 126
Query: 136 LGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDD 171
L + N+++ TLA ++ + Q + H + DD
Sbjct: 127 TVELARRLELGLENLRLETLARHWAVPQTRAHDAFDD 163
>gi|322391860|ref|ZP_08065325.1| DNA polymerase III, epsilon subunit [Streptococcus peroris ATCC
700780]
gi|321145340|gb|EFX40736.1| DNA polymerase III, epsilon subunit [Streptococcus peroris ATCC
700780]
Length = 196
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 19/124 (15%)
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT E ++ AP+ EEV K + G+N + D ++E + + V +
Sbjct: 59 GITSETLKDAPKVEEVLQKFQEFIGNLPLVGYNAAKSDLPILQEYGLDYREQYLVDL--- 115
Query: 134 DSLGVLTEKFGRRA------GNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLF 187
E RR+ N+K+ T+AS+ G Q H SL+D RM +V + F
Sbjct: 116 -----YNEALERRSSDLHGIANLKLQTVASFLGFKGQSHNSLEDARMTAQVYE-----AF 165
Query: 188 LESS 191
LES
Sbjct: 166 LESD 169
>gi|300727971|ref|ZP_07061349.1| exonuclease [Prevotella bryantii B14]
gi|299774813|gb|EFI71427.1| exonuclease [Prevotella bryantii B14]
Length = 279
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Query: 12 TAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
T ++ FDLETT R +++ I V P E + L+ P+ + S
Sbjct: 6 TKPLIIFDLETTGLDMVNDR--IIQISYIKVMPNG--EEKRGDELVNPE--KPIPAFVSD 59
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
GIT E V++AP F+E+ K+ I G +AG N RFD + E F G
Sbjct: 60 LTGITNEQVKNAPTFKEIGTKLADIFKGCDFAGFNSNRFDIPLLCEEFLRAG 111
>gi|182683937|ref|YP_001835684.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
CGSP14]
gi|182629271|gb|ACB90219.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
CGSP14]
Length = 208
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 26/161 (16%)
Query: 49 ELESFSTLIKPKDLSAVALKS--SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHN 106
E++++ + + ++V LKS + GIT E ++ AP E+V ++ + + G+N
Sbjct: 48 EIDAYDSYVH----TSVPLKSFINGLTGITAETLKDAPPVEKVLEEFQEFVGSLLMIGYN 103
Query: 107 IRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRA------GNMKMATLASYFG 160
+ D + E + + V + E F RR+ N+K+ T+AS+ G
Sbjct: 104 AAKSDLPILAEHGLDYSQQYKVDL--------YDEAFERRSSDLHGIANLKLQTVASFLG 155
Query: 161 LGQQKHRSLDDVRMNLEVLK------HCATVLFLESSLPNT 195
Q H SL+D RM V + +L ESSL N
Sbjct: 156 FQGQSHNSLEDARMTARVYESFLESDQARELLETESSLSNN 196
>gi|418070705|ref|ZP_12707980.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus
rhamnosus R0011]
gi|423077964|ref|ZP_17066651.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
rhamnosus ATCC 21052]
gi|357540125|gb|EHJ24142.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus
rhamnosus R0011]
gi|357552594|gb|EHJ34364.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
rhamnosus ATCC 21052]
Length = 933
Score = 48.1 bits (113), Expect = 0.005, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 10/144 (6%)
Query: 19 DLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITR 77
DLETT + G R +++FG +V K+++ + S +I P +V R GI+
Sbjct: 11 DLETTGTSVKDGDR--MIQFGCALVRHGKIIQ--TISQMINPD--RSVPQTIQRLTGISP 64
Query: 78 EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLG 137
E + +AP F+EVA + +L V+ HN+ FD + F IG P + + ID++
Sbjct: 65 ERLVAAPYFDEVASALHQVLTKTVFVAHNV-NFDYPFLNAEFERIGLPK-LQLEAIDTVE 122
Query: 138 VLTEKFGRRAGNMKMATLASYFGL 161
L + G+ +++ L ++F +
Sbjct: 123 -LAQVLLPEIGSFRLSDLTTHFAI 145
>gi|158313649|ref|YP_001506157.1| hypothetical protein Franean1_1813 [Frankia sp. EAN1pec]
gi|158109054|gb|ABW11251.1| DNA polymerase III, epsilon subunit [Frankia sp. EAN1pec]
Length = 603
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 73/166 (43%), Gaps = 10/166 (6%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V DLETT A + E GA+ V R L S+L++P + + S GI
Sbjct: 30 VVVDLETTGGSPATSE--ITEIGAVRV--RGGQILGEMSSLVRPS--APIPAFISVLTGI 83
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
T V +AP EV G V HN FD ++ A G PAP +D+
Sbjct: 84 TGAMVATAPGIGEVVPTFLEFARGAVLVAHNA-PFDLGFLRAAATACGYPAPA-WEHLDT 141
Query: 136 LGVLTEKFGR-RAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVL 179
+ + R + ++++LA+ FG Q HR+L D R ++VL
Sbjct: 142 VRIARRVISRDETRDCRLSSLAALFGSATQPNHRALADARATVDVL 187
>gi|15902940|ref|NP_358490.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae R6]
gi|15458502|gb|AAK99700.1| DNA polymerase III, epsilon chain [Streptococcus pneumoniae R6]
Length = 208
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 26/161 (16%)
Query: 49 ELESFSTLIKPKDLSAVALKS--SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHN 106
E++++ + + ++V LKS + GIT E ++ AP E+V ++ + + G+N
Sbjct: 48 EIDAYDSYVH----TSVPLKSFINGLTGITAETLKDAPPVEKVLEEFQEFVGSLLMIGYN 103
Query: 107 IRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRA------GNMKMATLASYFG 160
+ D + E + + V + E F RR+ N+K+ T+AS+ G
Sbjct: 104 AAKSDLPILAEHGLDYSQQYKVDL--------YDEAFERRSSDLHGIANLKLQTVASFLG 155
Query: 161 LGQQKHRSLDDVRMNLEVLK------HCATVLFLESSLPNT 195
Q H SL+D RM V + +L ESSL N
Sbjct: 156 FQGQSHNSLEDARMTARVYESFLESDQARELLETESSLSNN 196
>gi|354617355|ref|ZP_09034792.1| DNA polymerase III, epsilon subunit, partial [Saccharomonospora
paurometabolica YIM 90007]
gi|353218291|gb|EHB83093.1| DNA polymerase III, epsilon subunit, partial [Saccharomonospora
paurometabolica YIM 90007]
Length = 508
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 73/176 (41%), Gaps = 24/176 (13%)
Query: 13 AEIVFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
A V DLETT P G + E GA+ V R L F+TL+ P + +
Sbjct: 15 ATFVIVDLETTGGPPGARG----ITEVGAVKV--RGGEVLAEFATLVDPG--VPIPPQIV 66
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
GIT V AP +EV +G V HN FD + ++ A ++G P P
Sbjct: 67 ELTGITSAMVADAPPIDEVLPAFLEFASGCVLVAHNA-GFDVSFLRTACHDLGYRWPRPT 125
Query: 131 GMIDSLGVLTEKFGRRA------GNMKMATLASYFGL-GQQKHRSLDDVRMNLEVL 179
V T K RR + ++ LA FG HR+LDD R ++VL
Sbjct: 126 ------TVCTLKLARRVLSREETRSHRLGALARLFGAETTPTHRALDDARATVDVL 175
>gi|313206803|ref|YP_004045980.1| DNA polymerase III subunit epsilon [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|383486111|ref|YP_005395023.1| DNA polymerase iii, epsilon subunit [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|386321214|ref|YP_006017376.1| DNA polymerase III, epsilon subunit related 3'-5' exonucleases
[Riemerella anatipestifer RA-GD]
gi|416109383|ref|ZP_11591342.1| DNA polymerase III epsilon subunit [Riemerella anatipestifer RA-YM]
gi|442313981|ref|YP_007355284.1| hypothetical protein G148_0285 [Riemerella anatipestifer RA-CH-2]
gi|312446119|gb|ADQ82474.1| DNA polymerase III, epsilon subunit [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|315023876|gb|EFT36878.1| DNA polymerase III epsilon subunit [Riemerella anatipestifer RA-YM]
gi|325335757|gb|ADZ12031.1| DNA polymerase III, epsilon subunit related 3'-5' exonucleases
[Riemerella anatipestifer RA-GD]
gi|380460796|gb|AFD56480.1| DNA polymerase iii, epsilon subunit [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|441482904|gb|AGC39590.1| hypothetical protein G148_0285 [Riemerella anatipestifer RA-CH-2]
Length = 407
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 9/137 (6%)
Query: 50 LESFSTLIKPK-DLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIR 108
++ F +++ P+ D+S + GIT + V++AP+F E+A +I I G GHN+
Sbjct: 33 VDQFISMVNPEADISHFV---QKLTGITPKMVKTAPKFHEIAKRIIEITEGSTLVGHNV- 88
Query: 109 RFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHR 167
FD ++++F +G + +D++ L +K + + L G+ + HR
Sbjct: 89 DFDYRMLRQSFKRLG--YHFSIETLDTIP-LAKKLIPNEESYSLGKLVKSLGIPLAEHHR 145
Query: 168 SLDDVRMNLEVLKHCAT 184
+ D R L++ K T
Sbjct: 146 ASSDARATLDLFKLLMT 162
>gi|424657352|ref|ZP_18094637.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-81A2]
gi|408052473|gb|EKG87512.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-81A2]
Length = 226
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 95/213 (44%), Gaps = 29/213 (13%)
Query: 25 PRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAP 84
P G R ++E GA+ + RKL F +KP + L++ GIT E ++ P
Sbjct: 7 PHYEGHR--IIEIGAVEIINRKLTG-RHFHVYLKPD--RDIQLEAIEVHGITDEFLKDKP 61
Query: 85 EFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAE----IGKPAPVPVGMIDSLGVLT 140
E+++V ++ + G HN FD + FA+ IGK + + D+L +
Sbjct: 62 EYKDVHEEFVDFIKGAELVAHNA-PFDVGFMDYEFAKLGGAIGKTSDF-CKVTDTLAMAK 119
Query: 141 EKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSLPNTFNSNL 200
F + N+ + L +G+ HR+L ++ E+L A V L +
Sbjct: 120 RIFPGKRNNLDI--LCERYGI-DNSHRTLHGALLDAEIL---ADVYLL--------MTGG 165
Query: 201 QSSLTVTTRSRSNGKLPC----REETSRKSPPI 229
Q+SL ++ ++++G+L R + RK+ +
Sbjct: 166 QTSLQFSSVTQNSGELSAESLKRARSERKALKV 198
>gi|15900868|ref|NP_345472.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae TIGR4]
gi|111657353|ref|ZP_01408111.1| hypothetical protein SpneT_02001430 [Streptococcus pneumoniae
TIGR4]
gi|116515938|ref|YP_816361.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae D39]
gi|148984737|ref|ZP_01818005.1| exonuclease [Streptococcus pneumoniae SP3-BS71]
gi|148988438|ref|ZP_01819885.1| exonuclease [Streptococcus pneumoniae SP6-BS73]
gi|149002547|ref|ZP_01827481.1| exonuclease [Streptococcus pneumoniae SP14-BS69]
gi|149006328|ref|ZP_01830040.1| exonuclease [Streptococcus pneumoniae SP18-BS74]
gi|149019585|ref|ZP_01834904.1| exonuclease [Streptococcus pneumoniae SP23-BS72]
gi|168483063|ref|ZP_02708015.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
CDC1873-00]
gi|168491083|ref|ZP_02715226.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
CDC0288-04]
gi|168494423|ref|ZP_02718566.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
CDC3059-06]
gi|168575656|ref|ZP_02721592.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
MLV-016]
gi|169834430|ref|YP_001694438.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
Hungary19A-6]
gi|225854497|ref|YP_002736009.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae JJA]
gi|225858787|ref|YP_002740297.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae 70585]
gi|237650859|ref|ZP_04525111.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae CCRI
1974]
gi|237822226|ref|ZP_04598071.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae CCRI
1974M2]
gi|307127457|ref|YP_003879488.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
670-6B]
gi|342163658|ref|YP_004768297.1| DNA polymerase III subunit epsilon [Streptococcus pseudopneumoniae
IS7493]
gi|387757377|ref|YP_006064356.1| putative exonuclease [Streptococcus pneumoniae OXC141]
gi|417676748|ref|ZP_12326159.1| exonuclease family protein [Streptococcus pneumoniae GA17545]
gi|417696184|ref|ZP_12345363.1| exonuclease family protein [Streptococcus pneumoniae GA47368]
gi|417698407|ref|ZP_12347580.1| exonuclease family protein [Streptococcus pneumoniae GA41317]
gi|418073777|ref|ZP_12711035.1| exonuclease family protein [Streptococcus pneumoniae GA11184]
gi|418078485|ref|ZP_12715708.1| exonuclease family protein [Streptococcus pneumoniae 4027-06]
gi|418080451|ref|ZP_12717663.1| exonuclease family protein [Streptococcus pneumoniae 6735-05]
gi|418086724|ref|ZP_12723894.1| exonuclease family protein [Streptococcus pneumoniae GA47033]
gi|418089389|ref|ZP_12726546.1| exonuclease family protein [Streptococcus pneumoniae GA43265]
gi|418091734|ref|ZP_12728876.1| exonuclease family protein [Streptococcus pneumoniae GA44452]
gi|418096107|ref|ZP_12733222.1| exonuclease family protein [Streptococcus pneumoniae GA16531]
gi|418098364|ref|ZP_12735463.1| exonuclease family protein [Streptococcus pneumoniae 6901-05]
gi|418102714|ref|ZP_12739790.1| exonuclease family protein [Streptococcus pneumoniae NP070]
gi|418105057|ref|ZP_12742116.1| exonuclease family protein [Streptococcus pneumoniae GA44500]
gi|418107387|ref|ZP_12744425.1| exonuclease family protein [Streptococcus pneumoniae GA41410]
gi|418109958|ref|ZP_12746983.1| exonuclease family protein [Streptococcus pneumoniae GA49447]
gi|418112351|ref|ZP_12749353.1| exonuclease family protein [Streptococcus pneumoniae GA41538]
gi|418114492|ref|ZP_12751482.1| exonuclease family protein [Streptococcus pneumoniae 5787-06]
gi|418116732|ref|ZP_12753703.1| exonuclease family protein [Streptococcus pneumoniae 6963-05]
gi|418130155|ref|ZP_12767039.1| exonuclease family protein [Streptococcus pneumoniae GA07643]
gi|418132835|ref|ZP_12769708.1| exonuclease family protein [Streptococcus pneumoniae GA11304]
gi|418135054|ref|ZP_12771911.1| exonuclease family protein [Streptococcus pneumoniae GA11426]
gi|418143809|ref|ZP_12780609.1| exonuclease family protein [Streptococcus pneumoniae GA13494]
gi|418146215|ref|ZP_12782997.1| exonuclease family protein [Streptococcus pneumoniae GA13637]
gi|418148418|ref|ZP_12785183.1| exonuclease family protein [Streptococcus pneumoniae GA13856]
gi|418155029|ref|ZP_12791760.1| exonuclease family protein [Streptococcus pneumoniae GA16242]
gi|418162045|ref|ZP_12798732.1| exonuclease family protein [Streptococcus pneumoniae GA17328]
gi|418166622|ref|ZP_12803278.1| exonuclease family protein [Streptococcus pneumoniae GA17971]
gi|418169095|ref|ZP_12805739.1| exonuclease family protein [Streptococcus pneumoniae GA19077]
gi|418173365|ref|ZP_12809979.1| exonuclease family protein [Streptococcus pneumoniae GA41277]
gi|418175809|ref|ZP_12812406.1| exonuclease family protein [Streptococcus pneumoniae GA41437]
gi|418202265|ref|ZP_12838695.1| exonuclease family protein [Streptococcus pneumoniae GA52306]
gi|418216444|ref|ZP_12843168.1| exonuclease family protein [Streptococcus pneumoniae
Netherlands15B-37]
gi|418218735|ref|ZP_12845402.1| exonuclease family protein [Streptococcus pneumoniae NP127]
gi|418221046|ref|ZP_12847700.1| exonuclease family protein [Streptococcus pneumoniae GA47751]
gi|418225417|ref|ZP_12852046.1| exonuclease family protein [Streptococcus pneumoniae NP112]
gi|418229736|ref|ZP_12856342.1| exonuclease family protein [Streptococcus pneumoniae EU-NP01]
gi|418232060|ref|ZP_12858647.1| exonuclease family protein [Streptococcus pneumoniae GA07228]
gi|418238566|ref|ZP_12865121.1| exonuclease family protein [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|418973046|ref|ZP_13521086.1| DNA polymerase III, epsilon subunit [Streptococcus pseudopneumoniae
ATCC BAA-960]
gi|419422713|ref|ZP_13962929.1| exonuclease family protein [Streptococcus pneumoniae GA43264]
gi|419433547|ref|ZP_13973665.1| exonuclease family protein [Streptococcus pneumoniae GA40183]
gi|419440211|ref|ZP_13980263.1| exonuclease family protein [Streptococcus pneumoniae GA40410]
gi|419442479|ref|ZP_13982510.1| exonuclease family protein [Streptococcus pneumoniae GA13224]
gi|419453015|ref|ZP_13992988.1| exonuclease family protein [Streptococcus pneumoniae EU-NP03]
gi|419455394|ref|ZP_13995354.1| exonuclease family protein [Streptococcus pneumoniae EU-NP04]
gi|419457376|ref|ZP_13997321.1| exonuclease family protein [Streptococcus pneumoniae GA02254]
gi|419459837|ref|ZP_13999770.1| exonuclease family protein [Streptococcus pneumoniae GA02270]
gi|419462154|ref|ZP_14002064.1| exonuclease family protein [Streptococcus pneumoniae GA02714]
gi|419464387|ref|ZP_14004280.1| exonuclease family protein [Streptococcus pneumoniae GA04175]
gi|419466436|ref|ZP_14006319.1| exonuclease family protein [Streptococcus pneumoniae GA05248]
gi|419468861|ref|ZP_14008732.1| exonuclease family protein [Streptococcus pneumoniae GA06083]
gi|419470946|ref|ZP_14010805.1| exonuclease family protein [Streptococcus pneumoniae GA07914]
gi|419475386|ref|ZP_14015226.1| exonuclease family protein [Streptococcus pneumoniae GA14688]
gi|419477656|ref|ZP_14017481.1| exonuclease family protein [Streptococcus pneumoniae GA18068]
gi|419479819|ref|ZP_14019626.1| exonuclease family protein [Streptococcus pneumoniae GA19101]
gi|419486541|ref|ZP_14026307.1| exonuclease family protein [Streptococcus pneumoniae GA44128]
gi|419488836|ref|ZP_14028586.1| exonuclease family protein [Streptococcus pneumoniae GA44386]
gi|419495309|ref|ZP_14035027.1| exonuclease family protein [Streptococcus pneumoniae GA47461]
gi|419499510|ref|ZP_14039209.1| exonuclease family protein [Streptococcus pneumoniae GA47597]
gi|419503804|ref|ZP_14043473.1| exonuclease family protein [Streptococcus pneumoniae GA47760]
gi|419505924|ref|ZP_14045585.1| exonuclease family protein [Streptococcus pneumoniae GA49194]
gi|419512388|ref|ZP_14052022.1| exonuclease family protein [Streptococcus pneumoniae GA05578]
gi|419516667|ref|ZP_14056285.1| exonuclease family protein [Streptococcus pneumoniae GA02506]
gi|419525740|ref|ZP_14065304.1| exonuclease family protein [Streptococcus pneumoniae GA14373]
gi|419534463|ref|ZP_14073966.1| exonuclease family protein [Streptococcus pneumoniae GA17457]
gi|421206447|ref|ZP_15663508.1| exonuclease family protein [Streptococcus pneumoniae 2090008]
gi|421208812|ref|ZP_15665834.1| exonuclease family protein [Streptococcus pneumoniae 2070005]
gi|421211096|ref|ZP_15668080.1| exonuclease family protein [Streptococcus pneumoniae 2070035]
gi|421217529|ref|ZP_15674430.1| exonuclease family protein [Streptococcus pneumoniae 2070335]
gi|421224861|ref|ZP_15681605.1| exonuclease family protein [Streptococcus pneumoniae 2070768]
gi|421229638|ref|ZP_15686310.1| exonuclease family protein [Streptococcus pneumoniae 2061376]
gi|421231764|ref|ZP_15688409.1| exonuclease family protein [Streptococcus pneumoniae 2080076]
gi|421233979|ref|ZP_15690601.1| exonuclease family protein [Streptococcus pneumoniae 2061617]
gi|421236137|ref|ZP_15692738.1| exonuclease family protein [Streptococcus pneumoniae 2071004]
gi|421238625|ref|ZP_15695193.1| exonuclease family protein [Streptococcus pneumoniae 2071247]
gi|421242939|ref|ZP_15699460.1| exonuclease family protein [Streptococcus pneumoniae 2081074]
gi|421244814|ref|ZP_15701315.1| exonuclease family protein [Streptococcus pneumoniae 2081685]
gi|421247254|ref|ZP_15703741.1| exonuclease family protein [Streptococcus pneumoniae 2082170]
gi|421249289|ref|ZP_15705751.1| exonuclease family protein [Streptococcus pneumoniae 2082239]
gi|421266017|ref|ZP_15716900.1| exonuclease family protein [Streptococcus pneumoniae SPAR27]
gi|421268197|ref|ZP_15719068.1| exonuclease family protein [Streptococcus pneumoniae SPAR95]
gi|421270545|ref|ZP_15721401.1| exonuclease family protein [Streptococcus pneumoniae SPAR48]
gi|421272646|ref|ZP_15723490.1| exonuclease family protein [Streptococcus pneumoniae SPAR55]
gi|421280980|ref|ZP_15731778.1| exonuclease [Streptococcus pneumoniae GA04672]
gi|421283181|ref|ZP_15733968.1| exonuclease [Streptococcus pneumoniae GA04216]
gi|421284901|ref|ZP_15735678.1| exonuclease [Streptococcus pneumoniae GA60190]
gi|421291867|ref|ZP_15742605.1| exonuclease [Streptococcus pneumoniae GA56348]
gi|421298459|ref|ZP_15749147.1| exonuclease [Streptococcus pneumoniae GA60080]
gi|421303208|ref|ZP_15753872.1| exonuclease [Streptococcus pneumoniae GA17484]
gi|421307264|ref|ZP_15757908.1| exonuclease [Streptococcus pneumoniae GA60132]
gi|421311732|ref|ZP_15762339.1| exonuclease [Streptococcus pneumoniae GA58981]
gi|14972467|gb|AAK75112.1| exonuclease [Streptococcus pneumoniae TIGR4]
gi|116076514|gb|ABJ54234.1| exonuclease [Streptococcus pneumoniae D39]
gi|147759484|gb|EDK66476.1| exonuclease [Streptococcus pneumoniae SP14-BS69]
gi|147762105|gb|EDK69067.1| exonuclease [Streptococcus pneumoniae SP18-BS74]
gi|147923128|gb|EDK74243.1| exonuclease [Streptococcus pneumoniae SP3-BS71]
gi|147926119|gb|EDK77193.1| exonuclease [Streptococcus pneumoniae SP6-BS73]
gi|147930960|gb|EDK81940.1| exonuclease [Streptococcus pneumoniae SP23-BS72]
gi|168996932|gb|ACA37544.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
Hungary19A-6]
gi|172043421|gb|EDT51467.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
CDC1873-00]
gi|183574623|gb|EDT95151.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
CDC0288-04]
gi|183575623|gb|EDT96151.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
CDC3059-06]
gi|183578481|gb|EDT99009.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
MLV-016]
gi|225720810|gb|ACO16664.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae 70585]
gi|225723767|gb|ACO19620.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae JJA]
gi|301799966|emb|CBW32552.1| putative exonuclease [Streptococcus pneumoniae OXC141]
gi|306484519|gb|ADM91388.1| DNA polymerase III subunit epsilon [Streptococcus pneumoniae
670-6B]
gi|332075608|gb|EGI86076.1| exonuclease family protein [Streptococcus pneumoniae GA17545]
gi|332201459|gb|EGJ15529.1| exonuclease family protein [Streptococcus pneumoniae GA47368]
gi|332202848|gb|EGJ16917.1| exonuclease family protein [Streptococcus pneumoniae GA41317]
gi|341933540|gb|AEL10437.1| DNA polymerase III subunit epsilon [Streptococcus pseudopneumoniae
IS7493]
gi|353747676|gb|EHD28332.1| exonuclease family protein [Streptococcus pneumoniae 4027-06]
gi|353750624|gb|EHD31262.1| exonuclease family protein [Streptococcus pneumoniae GA11184]
gi|353752991|gb|EHD33615.1| exonuclease family protein [Streptococcus pneumoniae 6735-05]
gi|353758985|gb|EHD39571.1| exonuclease family protein [Streptococcus pneumoniae GA47033]
gi|353762075|gb|EHD42638.1| exonuclease family protein [Streptococcus pneumoniae GA43265]
gi|353763834|gb|EHD44384.1| exonuclease family protein [Streptococcus pneumoniae GA44452]
gi|353769724|gb|EHD50240.1| exonuclease family protein [Streptococcus pneumoniae 6901-05]
gi|353771094|gb|EHD51605.1| exonuclease family protein [Streptococcus pneumoniae GA16531]
gi|353776880|gb|EHD57355.1| exonuclease family protein [Streptococcus pneumoniae NP070]
gi|353778127|gb|EHD58597.1| exonuclease family protein [Streptococcus pneumoniae GA44500]
gi|353779570|gb|EHD60034.1| exonuclease family protein [Streptococcus pneumoniae GA41410]
gi|353782870|gb|EHD63300.1| exonuclease family protein [Streptococcus pneumoniae GA49447]
gi|353784217|gb|EHD64638.1| exonuclease family protein [Streptococcus pneumoniae GA41538]
gi|353787234|gb|EHD67641.1| exonuclease family protein [Streptococcus pneumoniae 5787-06]
gi|353789709|gb|EHD70101.1| exonuclease family protein [Streptococcus pneumoniae 6963-05]
gi|353803447|gb|EHD83739.1| exonuclease family protein [Streptococcus pneumoniae GA07643]
gi|353806791|gb|EHD87064.1| exonuclease family protein [Streptococcus pneumoniae GA11304]
gi|353809550|gb|EHD89810.1| exonuclease family protein [Streptococcus pneumoniae GA13494]
gi|353813093|gb|EHD93326.1| exonuclease family protein [Streptococcus pneumoniae GA13856]
gi|353815011|gb|EHD95233.1| exonuclease family protein [Streptococcus pneumoniae GA13637]
gi|353823321|gb|EHE03496.1| exonuclease family protein [Streptococcus pneumoniae GA16242]
gi|353828428|gb|EHE08568.1| exonuclease family protein [Streptococcus pneumoniae GA17328]
gi|353830218|gb|EHE10348.1| exonuclease family protein [Streptococcus pneumoniae GA17971]
gi|353834937|gb|EHE15033.1| exonuclease family protein [Streptococcus pneumoniae GA19077]
gi|353840064|gb|EHE20138.1| exonuclease family protein [Streptococcus pneumoniae GA41277]
gi|353842377|gb|EHE22424.1| exonuclease family protein [Streptococcus pneumoniae GA41437]
gi|353868068|gb|EHE47958.1| exonuclease family protein [Streptococcus pneumoniae GA52306]
gi|353873495|gb|EHE53356.1| exonuclease family protein [Streptococcus pneumoniae
Netherlands15B-37]
gi|353875390|gb|EHE55242.1| exonuclease family protein [Streptococcus pneumoniae NP127]
gi|353875969|gb|EHE55819.1| exonuclease family protein [Streptococcus pneumoniae GA47751]
gi|353882725|gb|EHE62536.1| exonuclease family protein [Streptococcus pneumoniae NP112]
gi|353886787|gb|EHE66567.1| exonuclease family protein [Streptococcus pneumoniae GA07228]
gi|353889642|gb|EHE69412.1| exonuclease family protein [Streptococcus pneumoniae EU-NP01]
gi|353894316|gb|EHE74058.1| exonuclease family protein [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|353902291|gb|EHE77821.1| exonuclease family protein [Streptococcus pneumoniae GA11426]
gi|379532374|gb|EHY97603.1| exonuclease family protein [Streptococcus pneumoniae GA02254]
gi|379532863|gb|EHY98087.1| exonuclease family protein [Streptococcus pneumoniae GA02270]
gi|379533000|gb|EHY98223.1| exonuclease family protein [Streptococcus pneumoniae GA02714]
gi|379539606|gb|EHZ04785.1| exonuclease family protein [Streptococcus pneumoniae GA04175]
gi|379544559|gb|EHZ09703.1| exonuclease family protein [Streptococcus pneumoniae GA05248]
gi|379545662|gb|EHZ10801.1| exonuclease family protein [Streptococcus pneumoniae GA07914]
gi|379546964|gb|EHZ12102.1| exonuclease family protein [Streptococcus pneumoniae GA06083]
gi|379554446|gb|EHZ19526.1| exonuclease family protein [Streptococcus pneumoniae GA13224]
gi|379559214|gb|EHZ24244.1| exonuclease family protein [Streptococcus pneumoniae GA14373]
gi|379560931|gb|EHZ25952.1| exonuclease family protein [Streptococcus pneumoniae GA14688]
gi|379565197|gb|EHZ30190.1| exonuclease family protein [Streptococcus pneumoniae GA17457]
gi|379567038|gb|EHZ32025.1| exonuclease family protein [Streptococcus pneumoniae GA18068]
gi|379570985|gb|EHZ35944.1| exonuclease family protein [Streptococcus pneumoniae GA19101]
gi|379576548|gb|EHZ41472.1| exonuclease family protein [Streptococcus pneumoniae GA40183]
gi|379579978|gb|EHZ44874.1| exonuclease family protein [Streptococcus pneumoniae GA40410]
gi|379587729|gb|EHZ52576.1| exonuclease family protein [Streptococcus pneumoniae GA44386]
gi|379588156|gb|EHZ53002.1| exonuclease family protein [Streptococcus pneumoniae GA44128]
gi|379588171|gb|EHZ53016.1| exonuclease family protein [Streptococcus pneumoniae GA43264]
gi|379595391|gb|EHZ60199.1| exonuclease family protein [Streptococcus pneumoniae GA47461]
gi|379602564|gb|EHZ67335.1| exonuclease family protein [Streptococcus pneumoniae GA47597]
gi|379606481|gb|EHZ71228.1| exonuclease family protein [Streptococcus pneumoniae GA47760]
gi|379607838|gb|EHZ72584.1| exonuclease family protein [Streptococcus pneumoniae GA49194]
gi|379626724|gb|EHZ91340.1| exonuclease family protein [Streptococcus pneumoniae EU-NP03]
gi|379629851|gb|EHZ94445.1| exonuclease family protein [Streptococcus pneumoniae EU-NP04]
gi|379636858|gb|EIA01416.1| exonuclease family protein [Streptococcus pneumoniae GA05578]
gi|379640670|gb|EIA05209.1| exonuclease family protein [Streptococcus pneumoniae GA02506]
gi|383350492|gb|EID28360.1| DNA polymerase III, epsilon subunit [Streptococcus pseudopneumoniae
ATCC BAA-960]
gi|395573819|gb|EJG34406.1| exonuclease family protein [Streptococcus pneumoniae 2070035]
gi|395575768|gb|EJG36333.1| exonuclease family protein [Streptococcus pneumoniae 2070005]
gi|395576361|gb|EJG36917.1| exonuclease family protein [Streptococcus pneumoniae 2090008]
gi|395585015|gb|EJG45407.1| exonuclease family protein [Streptococcus pneumoniae 2070335]
gi|395590649|gb|EJG50953.1| exonuclease family protein [Streptococcus pneumoniae 2070768]
gi|395596254|gb|EJG56476.1| exonuclease family protein [Streptococcus pneumoniae 2080076]
gi|395596299|gb|EJG56519.1| exonuclease family protein [Streptococcus pneumoniae 2061376]
gi|395602105|gb|EJG62249.1| exonuclease family protein [Streptococcus pneumoniae 2071247]
gi|395602876|gb|EJG63018.1| exonuclease family protein [Streptococcus pneumoniae 2061617]
gi|395605056|gb|EJG65188.1| exonuclease family protein [Streptococcus pneumoniae 2071004]
gi|395609314|gb|EJG69401.1| exonuclease family protein [Streptococcus pneumoniae 2081685]
gi|395609638|gb|EJG69724.1| exonuclease family protein [Streptococcus pneumoniae 2081074]
gi|395614590|gb|EJG74609.1| exonuclease family protein [Streptococcus pneumoniae 2082239]
gi|395614890|gb|EJG74908.1| exonuclease family protein [Streptococcus pneumoniae 2082170]
gi|395868340|gb|EJG79458.1| exonuclease family protein [Streptococcus pneumoniae SPAR48]
gi|395868753|gb|EJG79870.1| exonuclease family protein [Streptococcus pneumoniae SPAR27]
gi|395871113|gb|EJG82224.1| exonuclease family protein [Streptococcus pneumoniae SPAR95]
gi|395875755|gb|EJG86833.1| exonuclease family protein [Streptococcus pneumoniae SPAR55]
gi|395881144|gb|EJG92193.1| exonuclease [Streptococcus pneumoniae GA04216]
gi|395882141|gb|EJG93188.1| exonuclease [Streptococcus pneumoniae GA04672]
gi|395886880|gb|EJG97895.1| exonuclease [Streptococcus pneumoniae GA60190]
gi|395894084|gb|EJH05065.1| exonuclease [Streptococcus pneumoniae GA56348]
gi|395901830|gb|EJH12766.1| exonuclease [Streptococcus pneumoniae GA17484]
gi|395902415|gb|EJH13348.1| exonuclease [Streptococcus pneumoniae GA60080]
gi|395907871|gb|EJH18756.1| exonuclease [Streptococcus pneumoniae GA60132]
gi|395912310|gb|EJH23173.1| exonuclease [Streptococcus pneumoniae GA58981]
gi|429317802|emb|CCP37607.1| putative exonuclease [Streptococcus pneumoniae SPN034156]
gi|429319346|emb|CCP32604.1| putative exonuclease [Streptococcus pneumoniae SPN034183]
gi|429321162|emb|CCP34578.1| putative exonuclease [Streptococcus pneumoniae SPN994039]
gi|429322982|emb|CCP30619.1| putative exonuclease [Streptococcus pneumoniae SPN994038]
Length = 196
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 26/161 (16%)
Query: 49 ELESFSTLIKPKDLSAVALKS--SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHN 106
E++++ + + ++V LKS + GIT E ++ AP E+V ++ + + G+N
Sbjct: 36 EIDAYDSYVH----TSVPLKSFINGLTGITAETLKDAPPVEKVLEEFQEFVGSLLMIGYN 91
Query: 107 IRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRA------GNMKMATLASYFG 160
+ D + E + + V + E F RR+ N+K+ T+AS+ G
Sbjct: 92 AAKSDLPILAEHGLDYSQQYKVDL--------YDEAFERRSSDLHGIANLKLQTVASFLG 143
Query: 161 LGQQKHRSLDDVRMNLEVLK------HCATVLFLESSLPNT 195
Q H SL+D RM V + +L ESSL N
Sbjct: 144 FQGQSHNSLEDARMTARVYESFLESDQARELLETESSLSNN 184
>gi|417849914|ref|ZP_12495829.1| exonuclease [Streptococcus mitis SK1080]
gi|339455247|gb|EGP67854.1| exonuclease [Streptococcus mitis SK1080]
Length = 196
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 26/161 (16%)
Query: 49 ELESFSTLIKPKDLSAVALKS--SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHN 106
E++S+ + + ++V LKS + GIT E ++ AP EEV + + G+N
Sbjct: 36 EIDSYDSYVH----TSVPLKSFINGLTGITAETLKDAPPVEEVIKEFQEFVGSLPMVGYN 91
Query: 107 IRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRA------GNMKMATLASYFG 160
+ D + + + + V + E F RR+ N+K+ T+AS+ G
Sbjct: 92 AAKSDLPILADHGLDYSQQYKVDL--------YDEAFERRSSDLHGIANLKLQTVASFLG 143
Query: 161 LGQQKHRSLDDVRMNLEVLK------HCATVLFLESSLPNT 195
Q H SL+D RM V + +L ESSL N
Sbjct: 144 FQGQSHNSLEDARMTARVYESFLESDQARELLETESSLSNN 184
>gi|295397429|ref|ZP_06807516.1| DNA polymerase III [Aerococcus viridans ATCC 11563]
gi|294974330|gb|EFG50070.1| DNA polymerase III [Aerococcus viridans ATCC 11563]
Length = 314
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 76/170 (44%), Gaps = 10/170 (5%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
+ V D+ETT + + +LE AI + ++ +FSTL++P ++ +
Sbjct: 24 DYVMIDIETTGLKPSNDE--ILELSAIRIRDHQMDR--TFSTLVQPN--RPISGFITNLT 77
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GI+ V +AP E+ + + + G+N+ FD + I + + PV +
Sbjct: 78 GISNHMVMTAPPIEQAIPEFLDFIQEDIILGYNV-NFDLSFIYDTAVNLYN-FPVRNDYL 135
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVLKHC 182
D L + K N K+ T+A ++G+ + HR L D + +EV
Sbjct: 136 DVL-TIARKLVTETPNHKLGTMAQFYGISYEGAHRGLTDCYITVEVYNQL 184
>gi|269219439|ref|ZP_06163293.1| putative DNA polymerase III, epsilon subunit [Actinomyces sp. oral
taxon 848 str. F0332]
gi|269211135|gb|EEZ77475.1| putative DNA polymerase III, epsilon subunit [Actinomyces sp. oral
taxon 848 str. F0332]
Length = 589
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 72/169 (42%), Gaps = 13/169 (7%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V DLETT + + + E GA+ V R + FSTL+ P + S GI
Sbjct: 45 VVVDLETTGAKPGPES--ITEIGAVKV--RGGETVGEFSTLVNPGQPIPAFITS--LTGI 98
Query: 76 TREAVESAPEFEEVADKIFSIL---NGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
T AP V + L V A HN R FD +K AFA P V +
Sbjct: 99 TTAMTARAPRIAAVIPSLIEFLCAGPSTVVAAHNAR-FDVGHLKAAFAGADFTWPS-VRV 156
Query: 133 IDSLGVLTEKFGR-RAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVL 179
+D++ + F N K++TLA G HR+LDD R ++VL
Sbjct: 157 LDTVALARRAFSSDEVPNFKLSTLAGACGATTAPNHRALDDARATVDVL 205
>gi|358636742|dbj|BAL24039.1| DNA polymerase III, epsilon subunit [Azoarcus sp. KH32C]
Length = 470
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+ F D+ETT R + E G + V + E +S+L++P + +++ + G
Sbjct: 11 LAFVDIETTGA--TSSRDSITEIGIVEVDQGGVRE---WSSLVRPDNRIPPSIE--QLTG 63
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
I+ E V AP F E+AD + L RV+ HN RFD I+ AF IG
Sbjct: 64 ISNEMVADAPTFAELADTLLDRLQDRVFVAHNA-RFDHGFIRAAFRRIG 111
>gi|404369185|ref|ZP_10974529.1| hypothetical protein FUAG_00821 [Fusobacterium ulcerans ATCC 49185]
gi|313688471|gb|EFS25306.1| hypothetical protein FUAG_00821 [Fusobacterium ulcerans ATCC 49185]
Length = 190
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 91/199 (45%), Gaps = 38/199 (19%)
Query: 14 EIVFFDLET--TVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
+I+F D ET P+ + +++ I+ +K ++E F+ IKP S V K+
Sbjct: 2 KILFIDTETGGLNPKESA----LIQLSGIVRIDKK--DVEEFNFFIKPFAESEVNAKALE 55
Query: 72 CDGITREAVESA---PE------FEEVADKI---FSILNGRVWAGHNIRRFDCARIKEAF 119
G T + +E+ PE F+++ D+ + + + AG+N++ FD ++ F
Sbjct: 56 VQGRTEKELETEKYRPEKEVYTDFKKILDRYIDKYDKTDKFIVAGYNVK-FDIDMLQSFF 114
Query: 120 AEIGKP-----------APVP-VGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHR 167
G P+P +GM+ VL E N K+ T YFG+G + H
Sbjct: 115 KRNGDNFLFSYISSSVLDPLPCIGMLQLCEVLPE-----LKNNKLETWCEYFGIGFKAHD 169
Query: 168 SLDDVRMNLEVLKHCATVL 186
SL+D++ E++ A ++
Sbjct: 170 SLEDIKATKELIFKIAKLI 188
>gi|378718306|ref|YP_005283195.1| DNA polymerase III subunit epsilon [Gordonia polyisoprenivorans
VH2]
gi|375753009|gb|AFA73829.1| DNA polymerase III epsilon subunit [Gordonia polyisoprenivorans
VH2]
Length = 622
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 73/172 (42%), Gaps = 20/172 (11%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
IV DLETT A R + E GA+ V R L F+TL+ P+ ++ + G
Sbjct: 45 IVVVDLETTGGDPA--RDAITEIGAVKV--RGGEVLGEFATLVDPQ--RSIPPQIVALTG 98
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
IT V AP+ EV G + HN RFD ++ A + P +
Sbjct: 99 ITSAMVYDAPQIGEVLSSFVEFARGCLLVAHNA-RFDMGFLRHNAARLDLAWPFHTSLC- 156
Query: 135 SLGVLTEKFGRR------AGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
T + RR A +++ LA F + + HR+LDD R +EVL
Sbjct: 157 -----TVRLARRVLTRDEAPTVRLGALADLFDVSVRPTHRALDDARATVEVL 203
>gi|149927491|ref|ZP_01915745.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105]
gi|149823764|gb|EDM82990.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105]
Length = 240
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 12/167 (7%)
Query: 16 VFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
V D ETT + R G R ++E G I V R++ + F I P+ V + + G
Sbjct: 4 VVLDTETTGLEVRQGHR--IIEIGCIEVNGRQVTD-HHFHQYINPE--REVDEGAFQVHG 58
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG--KPAPVPVGM 132
I+ E + P+F+++A + G HN FD + +G K A G+
Sbjct: 59 ISDEMLADKPKFKQIAKDFLDFVQGSTLIIHN-ASFDIGFLDGELERLGLGKMADYVDGV 117
Query: 133 IDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
IDSLG+ E F + N+ L G+ HR L ++ ++L
Sbjct: 118 IDSLGMAREMFPGKRNNLD--ALCDRLGV-NNAHRQLHGALLDSQIL 161
>gi|395242342|ref|ZP_10419339.1| ATP-dependent DNA helicase [Lactobacillus pasteurii CRBIP 24.76]
gi|394480074|emb|CCI85579.1| ATP-dependent DNA helicase [Lactobacillus pasteurii CRBIP 24.76]
Length = 928
Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
DLETT +R +++FG IV +K+ ++++S +I P + + GIT E
Sbjct: 14 DLETTGTQRENGNH-IIQFGCAIV--KKMKVVKTYSFMINPN--CDIPMSIQNLTGITNE 68
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNI 107
V + P+F A KI IL G + HN+
Sbjct: 69 DVANQPDFSHYAQKIVEILEGTTFVAHNV 97
>gi|395497631|ref|ZP_10429210.1| DNA polymerase III subunit epsilon [Pseudomonas sp. PAMC 25886]
Length = 248
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 106/265 (40%), Gaps = 36/265 (13%)
Query: 16 VFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK---DLSAVALKSSR 71
V D ETT +P G R ++E G + + R+L F ++P D A+ +
Sbjct: 6 VVLDTETTGMPVTDGHR--IIEIGCVELMGRRLTG-RHFHVYLQPDRESDEGAIGVH--- 59
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV- 130
GIT E + P F EVAD+ F +NG HN FD I FA +G+ +
Sbjct: 60 --GITNEFLVGKPRFAEVADEFFEFINGAQLIIHNA-AFDVGFINNEFALMGQTDRADIT 116
Query: 131 ---GMIDSLGVLTEKF-GRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVL 186
++D+L + E+ G+R + L +G+ R L ++ E+L +
Sbjct: 117 QHCSILDTLMMARERHPGQRN---SLDALCKRYGV-DNSGRELHGALLDSEILADVYLTM 172
Query: 187 FLESSLPNTFNSNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQRSAVPYTRTSLG 246
+ Q+SL++ + S+G +R S L R R S
Sbjct: 173 -----------TGGQTSLSLAGNA-SDGNGSAEGSGNRPSEIRRLPADRQPTTIIRASEQ 220
Query: 247 KMTESVKNL--LCKSQGSQPLNTLL 269
M E L + KS G+ L T L
Sbjct: 221 DMAEHAARLEAIAKSAGAPALWTQL 245
>gi|77458414|ref|YP_347919.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens Pf0-1]
gi|77382417|gb|ABA73930.1| DNA polymerase III, epsilon chain [Pseudomonas fluorescens Pf0-1]
Length = 252
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 16 VFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK---DLSAVALKSSR 71
V D ETT +P G R ++E G + + R+L F ++P D A+A+
Sbjct: 6 VVLDTETTGMPVTDGHR--IIEIGCVELIGRRLTG-RHFHVYLQPDRESDEGAIAVH--- 59
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGK 124
GIT E + P F EVAD+ F +NG HN FD I FA +G+
Sbjct: 60 --GITNEFLVGKPRFAEVADEFFEFINGAQLIIHNA-AFDVGFINNEFALMGQ 109
>gi|15829146|ref|NP_326506.1| DNA polymerase III PolC [Mycoplasma pulmonis UAB CTIP]
gi|14424449|sp|P47729.2|DPO3_MYCPU RecName: Full=DNA polymerase III PolC-type; Short=PolIII
gi|14090090|emb|CAC13848.1| DNA POLYMERASE III, ALPHA CHAIN POLC-TYPE (POLIII) [Mycoplasma
pulmonis]
Length = 1435
Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
E V +D+ETT +++FGA ++ +++E F IKPK S + +++
Sbjct: 403 EYVVYDIETTGLSPMLNE--LIQFGASVIKNGRIIETHHF--FIKPK--SKLDSFTTKLT 456
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAE 121
GIT+E +E E +E +KI SI R+ HN FD +K+ F +
Sbjct: 457 GITQEHLEKGYELQEALEKISSIFKARIMVAHNA-AFDHNFLKQKFID 503
>gi|487436|gb|AAA18178.1| DNA polymerase III [Mycoplasma pulmonis]
gi|1090178|prf||2018296A DNA polymerase III
Length = 1435
Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
E V +D+ETT +++FGA ++ +++E F IKPK S + +++
Sbjct: 403 EYVVYDIETTGLSPMLNE--LIQFGASVIKNGRIIETHHF--FIKPK--SKLDSFTTKLT 456
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAE 121
GIT+E +E E +E +KI SI R+ HN FD +K+ F +
Sbjct: 457 GITQEHLEKGYELQEALEKISSIFKARIMVAHNA-AFDHNFLKQKFID 503
>gi|395796827|ref|ZP_10476121.1| DNA polymerase III subunit epsilon [Pseudomonas sp. Ag1]
gi|421137694|ref|ZP_15597771.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens BBc6R8]
gi|395339107|gb|EJF70954.1| DNA polymerase III subunit epsilon [Pseudomonas sp. Ag1]
gi|404511047|gb|EKA24940.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens BBc6R8]
Length = 248
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 106/265 (40%), Gaps = 36/265 (13%)
Query: 16 VFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK---DLSAVALKSSR 71
V D ETT +P G R ++E G + + R+L F ++P D A+ +
Sbjct: 6 VVLDTETTGMPVTDGHR--IIEIGCVELMGRRLTG-RHFHVYLQPDRESDEGAIGVH--- 59
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV- 130
GIT E + P F EVAD+ F +NG HN FD I FA +G+ +
Sbjct: 60 --GITNEFLVGKPRFAEVADEFFEFINGAQLIIHNA-AFDVGFINNEFALMGQTDRADIT 116
Query: 131 ---GMIDSLGVLTEKF-GRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVL 186
++D+L + E+ G+R + L +G+ R L ++ E+L +
Sbjct: 117 RHCSILDTLMMARERHPGQRN---SLDALCKRYGV-DNSGRELHGALLDSEILADVYLTM 172
Query: 187 FLESSLPNTFNSNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQRSAVPYTRTSLG 246
+ Q+SL++ + S+G +R S L R R S
Sbjct: 173 -----------TGGQTSLSLAGNA-SDGNGSAEGSGNRPSEIRRLPADRQPTTIIRASEQ 220
Query: 247 KMTESVKNL--LCKSQGSQPLNTLL 269
M E L + KS G+ L T L
Sbjct: 221 DMAEHAARLEAIAKSAGAPALWTQL 245
>gi|166032729|ref|ZP_02235558.1| hypothetical protein DORFOR_02444 [Dorea formicigenerans ATCC
27755]
gi|166027086|gb|EDR45843.1| DNA polymerase III, alpha subunit, Gram-positive type [Dorea
formicigenerans ATCC 27755]
Length = 1521
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 13/165 (7%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V FDLETT A + ++E GA+ V ++ + +ST + PK + + ++ I
Sbjct: 479 VVFDLETTGFSSAKDK--IIEIGAVKVENGEITD--KYSTFVNPK--IPIPFRITQLTSI 532
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG-KPAPVPVGMID 134
T E V +PE E + + + V HN FD + I+E + G +P V +
Sbjct: 533 TDEMVMESPEIETILPQFLKFVGDAVLVAHN-ASFDVSFIEENCRQQGIEPDFTSVDTVG 591
Query: 135 SLGVLTEKFGRRAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEV 178
VL + K+ +A + Q+ HR++DD R+ E+
Sbjct: 592 LARVLLPTLSK----FKLNVVAKALNISQEHHHRAVDDARVTAEI 632
>gi|390457404|ref|ZP_10242932.1| Inhibitor of the KinA pathway to sporulation, exonuclease
[Paenibacillus peoriae KCTC 3763]
Length = 223
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 76/181 (41%), Gaps = 19/181 (10%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVC--PRKLVELESFSTLIKPKDLSAVALKSSR 71
+ + +DLE TV R A +++ GA+ V L ++F + ++P + ++ + +
Sbjct: 2 QYIIYDLEFTVSRNARYSSEIIDIGAVKVVQGDDGLYVADTFHSFVRPSNRPVLSTDTVQ 61
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCA---RIKEAFAEIGKPAPV 128
GIT+ +++AP F E + + W G + + CA ++ + V
Sbjct: 62 FTGITQRDIDAAPLFPEAVKQFVA------WLGTDSSYYLCAWGPDDRQKLVSHCRTHHV 115
Query: 129 PVGMIDSLGVLTEKFGRRAG--------NMKMATLASYFGLGQQKHRSLDDVRMNLEVLK 180
+G I + + + R G ++ A + Q+HR+LDD +V
Sbjct: 116 DLGWIHNTNDIQKPISRLFGSGGKYRQLSLSQALELCHIDFDGQQHRALDDAINTAQVFM 175
Query: 181 H 181
H
Sbjct: 176 H 176
>gi|332298225|ref|YP_004440147.1| DNA polymerase III subunit epsilon [Treponema brennaborense DSM
12168]
gi|332181328|gb|AEE17016.1| DNA polymerase III, epsilon subunit [Treponema brennaborense DSM
12168]
Length = 186
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 10/166 (6%)
Query: 18 FDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITR 77
FD ETT + +R ++E GAI ++ + LI P + +S + IT
Sbjct: 26 FDTETTGLKPEYER--LIEIGAIRFDKNGIIA--RYDILINPG--KPIPPGASAINNITD 79
Query: 78 EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLG 137
+ V + P E V + + V HN FD + + + G P+ D++
Sbjct: 80 DMVRNCPLIESVLPDFLTFVRDSVLVAHNAG-FDLSFVNKELERSGF-NPLKNNAADTVH 137
Query: 138 VLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHC 182
+ +F + N K+ +LA+YFG+ + HR+ DD R+ +EV C
Sbjct: 138 LARSRFPQLP-NHKLQSLAAYFGIDVRNAHRAEDDARVCMEVFLRC 182
>gi|89898431|ref|YP_515541.1| DNA polymerase III subunit epsilon [Chlamydophila felis Fe/C-56]
gi|89331803|dbj|BAE81396.1| DNA polymerase III epsilon chain [Chlamydophila felis Fe/C-56]
Length = 228
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 13/160 (8%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
++F+D ETT + R ++E A V ESF T + PK + ++S+ G
Sbjct: 4 LIFYDTETTGTQIDKDR--IIEIAAF-----NNVTKESFVTYVNPK--IPIPEEASKIHG 54
Query: 75 ITREAVESAPEFEEVADKIFSIL-NGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
IT V SAP+F E + N V HN FD + E P+ + I
Sbjct: 55 ITTSTVASAPDFPEAYKQFRDFCGNEAVLVAHNNDGFDFPLL-EKECRRHSLEPLTLRTI 113
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDDV 172
DSL +K+ + L +G + Q HR+LDDV
Sbjct: 114 DSLK-WAQKYRPDLPKHNLQYLRQVYGFAENQAHRALDDV 152
>gi|219669053|ref|YP_002459488.1| DnaQ family exonuclease/DinG family helicase [Desulfitobacterium
hafniense DCB-2]
gi|423074130|ref|ZP_17062862.1| DnaQ family exonuclease/DinG family helicase [Desulfitobacterium
hafniense DP7]
gi|219539313|gb|ACL21052.1| DnaQ family exonuclease/DinG family helicase [Desulfitobacterium
hafniense DCB-2]
gi|361854976|gb|EHL07000.1| DnaQ family exonuclease/DinG family helicase [Desulfitobacterium
hafniense DP7]
Length = 929
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 15/172 (8%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
+IV D+ETT ++EF A+ C + E E+FS LI P+ V + R
Sbjct: 4 GKIVVIDIETTGFDIYNDE--IIEFAAL--CIEEGEEAEAFSVLISPR--RQVPERILRL 57
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
GI+ E ++ A + DKI + + GHN+ FD +++A +
Sbjct: 58 TGISPEELKQAGSLQAYRDKILDLFQDAIIVGHNV-EFDLGFLEQALT-----IHFENTL 111
Query: 133 IDSLGVLTEKFGRRAGNMKMATLASYFGLG--QQKHRSLDDVRMNLEVLKHC 182
D+L + + K+ L GL ++ HR+L D R E+L+ C
Sbjct: 112 WDTLEIARILYPNMP-KYKLGDLTKSLGLTPLEKAHRALFDARAAWELLQAC 162
>gi|257439598|ref|ZP_05615353.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii
A2-165]
gi|257197965|gb|EEU96249.1| DNA polymerase III, alpha subunit, Gram-positive type
[Faecalibacterium prausnitzii A2-165]
Length = 1417
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 69/163 (42%), Gaps = 16/163 (9%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
E FD ETT + ++ E GA+IV ++VE F T +KP + K +
Sbjct: 395 GEFCVFDTETTGLDPGVE--YLTEIGAVIVRNGEVVE--EFDTFVKPG--KPITPKITEL 448
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG---KPAPVP 129
GIT E V AP +E + +GR+ HN FD +K A G +P
Sbjct: 449 TGITNEMVADAPGEKEALEAFLRFADGRILVAHNAHAFDIRFLKAAAKRSGISFEPT--- 505
Query: 130 VGMIDSLGVLTEKFGRRAGNMKMATLASYFGL-GQQKHRSLDD 171
ID+L + + N K T+ + L + HR+ +D
Sbjct: 506 --YIDTL-TMAQAMYPGLHNYKQGTINKHLELPSYEAHRACED 545
>gi|333370994|ref|ZP_08462962.1| DNA polymerase III PolC, partial [Desmospora sp. 8437]
gi|332976806|gb|EGK13634.1| DNA polymerase III PolC [Desmospora sp. 8437]
Length = 1099
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 22/163 (13%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKP-KDLSAVALKSSRCDG 74
V FD+ETT ++E A+ V ++++ F + I P + L+A + G
Sbjct: 417 VVFDVETTGLSAVHDE--IIELAAVKVKDGEIID--RFESFINPHRKLTATI---TELTG 469
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG-KPAPVPVGMI 133
IT E V APE EV + + G V HN RFD ++ A + G +P PV +
Sbjct: 470 ITDEMVVDAPELSEVLPRYLEFIEGTVLVAHNA-RFDMGFLQAACKKTGCQPVDHPV--L 526
Query: 134 DSLGVLTEKFGR----RAGNMKMATLASYFGLG-QQKHRSLDD 171
D+L + GR R N ++ TL F + Q HR++ D
Sbjct: 527 DTL-----ELGRFLYPRLKNHRLNTLCKQFDIELTQHHRAIYD 564
>gi|409402570|ref|ZP_11252107.1| DNA polymerase III subunit epsilon [Acidocella sp. MX-AZ02]
gi|409128847|gb|EKM98725.1| DNA polymerase III subunit epsilon [Acidocella sp. MX-AZ02]
Length = 228
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 59/130 (45%), Gaps = 9/130 (6%)
Query: 16 VFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKP-KDLSAVALKSSRCD 73
V FD ETT G R V+E AI + L +F L+ P +D+ A S+R
Sbjct: 5 VLFDTETTGFEPLTGDR--VIEIAAIEL-ENDLPTGNTFYALLDPERDIPA---DSTRIH 58
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
IT VE P+F EVAD++ + HN FD I IG+P MI
Sbjct: 59 AITNAHVEGKPKFAEVADEMLAFFGESPLVAHNA-PFDFGFISAELQRIGRPPLDKARMI 117
Query: 134 DSLGVLTEKF 143
D+L + ++F
Sbjct: 118 DTLVLAKQRF 127
>gi|421478102|ref|ZP_15925872.1| exonuclease [Burkholderia multivorans CF2]
gi|400225249|gb|EJO55426.1| exonuclease [Burkholderia multivorans CF2]
Length = 375
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 16/187 (8%)
Query: 6 PSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAV 65
PS A +VF DLETT A R + E G + + P + + +++TL+ P +
Sbjct: 6 PSDPASEQPLVFVDLETTGGTPAEHR--ITEIGVVEIGP---LGVSTWTTLVNPG--QPI 58
Query: 66 ALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG-- 123
+ GI+ V AP F E+A +F L+ +++ HN FD ++ F G
Sbjct: 59 PPFIQQLTGISDAMVRDAPSFAELAPALFERLDSKLFVAHNA-SFDRGFLRAEFERAGFA 117
Query: 124 -KPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHC 182
P ++ ++ + F R + + A +A + + +HR+L D + + +H
Sbjct: 118 FNP-----DVLCTVRLSRALFPRESRHGLDALIARHGLVPAARHRALADADLLWQFWRHL 172
Query: 183 ATVLFLE 189
++ LE
Sbjct: 173 HDIVPLE 179
>gi|315446380|ref|YP_004079259.1| DNA polymerase III subunit epsilon [Mycobacterium gilvum Spyr1]
gi|315264683|gb|ADU01425.1| DNA polymerase III, epsilon subunit [Mycobacterium gilvum Spyr1]
Length = 333
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 20/180 (11%)
Query: 6 PSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAV 65
P+ G V D+ET+ R R ++ A+ + VE +S +L+ P V
Sbjct: 12 PAHEDGAGWAVV-DVETSGFRPGQAR--IVSVAALALSDDGNVE-KSLYSLLDP----GV 63
Query: 66 ALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKP 125
+ G+T E +E P F +V + +L GR HN+ FD + + +G
Sbjct: 64 DPGPTHVHGLTAEMLEGQPTFGDVVGDLCEVLRGRTLVAHNV-GFDYSFLSAEAELVGAE 122
Query: 126 APVPVGMIDSLGVLTEKFGRRAG----NMKMATLASYFGLGQQK-HRSLDDVRMNLEVLK 180
P ID++ + T + RR N+++ TLA+++G+ Q + H +LDD + ++LK
Sbjct: 123 LP-----IDTV-MCTVELARRLDLGLENLRLETLAAHWGVTQMRPHDALDDAMVLAQILK 176
>gi|332653359|ref|ZP_08419104.1| DNA polymerase III, alpha subunit, Gram-positive type
[Ruminococcaceae bacterium D16]
gi|332518505|gb|EGJ48108.1| DNA polymerase III, alpha subunit, Gram-positive type
[Ruminococcaceae bacterium D16]
Length = 1396
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 73/161 (45%), Gaps = 11/161 (6%)
Query: 12 TAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
+ EIV FD+ETT + +R ++E GA ++ ++ E +F+T + P + ++ +
Sbjct: 368 SQEIVCFDIETTGLDK--RREVIIEIGAAVLKNGEVTE--TFNTFVAPGRI--LSPEIIH 421
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GIT E + AP EE + R A HN FD I + G P P
Sbjct: 422 LTGITDEMLVGAPSQEEALRAFLDFVGDRPLAAHNA-EFDMGFISTGCRKYGIPFTNP-- 478
Query: 132 MIDSLGVLTEKFGRRAGNMKMATLASYFGL-GQQKHRSLDD 171
IDSL +L + G K+ +A Y L HR+ DD
Sbjct: 479 SIDSL-ILAQNLLPELGKYKLDIVAEYLQLPAFNHHRASDD 518
>gi|397690897|ref|YP_006528151.1| DNA polymerase III epsilon subunit [Melioribacter roseus P3M]
gi|395812389|gb|AFN75138.1| DNA polymerase III epsilon subunit [Melioribacter roseus P3M]
Length = 549
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 7/115 (6%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
AE FD ETT +R V+E G + + +K+++ ++S+ I P V +R
Sbjct: 11 AEYCVFDFETTGVSARNER--VIEIGIVKIRNKKIID--TYSSYINPG--RQVPPFITRL 64
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAP 127
GIT + V AP FE+V + I V HN+ +FD + +K + G P
Sbjct: 65 TGITDDDVAQAPYFEDVYNDILDFFGDSVLVAHNL-KFDYSFLKYECLKTGLEMP 118
>gi|296132882|ref|YP_003640129.1| DNA polymerase III subunit alpha [Thermincola potens JR]
gi|296031460|gb|ADG82228.1| DNA polymerase III, alpha subunit [Thermincola potens JR]
Length = 1442
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 75/175 (42%), Gaps = 12/175 (6%)
Query: 7 SQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVA 66
+A A V FDLETT ++E GA+ + K+ L+ FS + P +
Sbjct: 422 EEAVKDATYVVFDLETTGFSPVTDE--IIEIGAVKIHGNKI--LDRFSAFVCPG--REIP 475
Query: 67 LKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEI-GKP 125
+ GIT V AP EV K + V HN +FD ++ +I +
Sbjct: 476 PEVQELTGITNNMVSDAPPIAEVLPKFIDFVGDAVLVAHN-AQFDTGFLRANMEKILNRT 534
Query: 126 APVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
PV +D+LG+ F N K+ TLA F + + HR++DD ++L
Sbjct: 535 LAQPV--LDTLGLARGLFPDMK-NHKLKTLAKEFNVKLENHHRAVDDAEATAQLL 586
>gi|224023848|ref|ZP_03642214.1| hypothetical protein BACCOPRO_00565 [Bacteroides coprophilus DSM
18228]
gi|224017070|gb|EEF75082.1| hypothetical protein BACCOPRO_00565 [Bacteroides coprophilus DSM
18228]
Length = 258
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 97/254 (38%), Gaps = 24/254 (9%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+VFFDLETT R ++E + V P ES + I P + SS G
Sbjct: 9 LVFFDLETTGTNINTDR--IVEICYLKVYPNG--NEESKTMRINPG--MHIPEASSAIHG 62
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
I V P F+EVA I L G AG N RFD + E F G +
Sbjct: 63 IYDADVADCPTFKEVAKDIARDLEGADIAGFNSNRFDVPVLVEEFLRAGIDIDLTRRKFI 122
Query: 135 SLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLK----HCATVL--- 186
+ V+ K +R + A Y G + H + D R EVLK H VL
Sbjct: 123 DVQVIYHKLEQRTLS---AAYKFYCGKNLEDAHTAEADTRATYEVLKAQLDHYPDVLEND 179
Query: 187 --FLESSLPNTFNSNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQRSAVPYTRTS 244
FL S +++N N+ + + + + K P+S QR Y
Sbjct: 180 INFL--SEYSSYNKNVDFAGRIVYDDKG---VEVFNFGKYKGMPVSEVLQRDPGYYGWVL 234
Query: 245 LGKMTESVKNLLCK 258
G T + KN+L K
Sbjct: 235 NGDFTLNTKNVLTK 248
>gi|315917497|ref|ZP_07913737.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
25563]
gi|313691372|gb|EFS28207.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
25563]
Length = 1450
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 88/210 (41%), Gaps = 19/210 (9%)
Query: 7 SQAAGTAEIVFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAV 65
Q A V +DLET G+ ++E GA+ + +++V+ FS L+ P ++
Sbjct: 416 DQDLEKASFVVYDLETLGFNSHEGK---IIEIGAVKIVEKRIVD--RFSQLVNPG--QSI 468
Query: 66 ALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKP 125
IT V++ P EEV K + G + HN FD +K+ + G
Sbjct: 469 PQNIVDVTNITDSMVQNEPNIEEVLPKFLDFIEGSILVAHN-ADFDIGYLKQQCKQQGYS 527
Query: 126 APVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHCAT 184
P ID+L + + + + L GL + HR++DD + +
Sbjct: 528 DFNP-SFIDTLQMAKDLYPELK-QFGLGPLNKKLGLSLENHHRAVDDCQATGNMF----- 580
Query: 185 VLFLESSLPNTFN--SNLQSSLTVTTRSRS 212
++FL+ L + S +Q + V T+ ++
Sbjct: 581 LIFLDKYLDQGIHKLSEMQGAFPVNTKKQN 610
>gi|255037648|ref|YP_003088269.1| DNA polymerase III subunit epsilon [Dyadobacter fermentans DSM
18053]
gi|254950404|gb|ACT95104.1| DNA polymerase III, epsilon subunit [Dyadobacter fermentans DSM
18053]
Length = 269
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLV--ELESFSTLIKPKDLSAVALKSSRC 72
I FFDLETT R ++E + + LV E E + I P+ + L+SS
Sbjct: 10 IAFFDLETTGVNIVRDR--IVEISVV----KALVNGETEIRTRRINPE--MPIPLESSLI 61
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
GI E V+ AP F+ VA + S L G AG N RFD + E F +G
Sbjct: 62 HGIYDEDVKDAPTFKSVAKNLASFLEGCDLAGFNSNRFDIPMLVEEFLRVG 112
>gi|145221884|ref|YP_001132562.1| DNA polymerase III subunit epsilon [Mycobacterium gilvum PYR-GCK]
gi|145214370|gb|ABP43774.1| DNA polymerase III, epsilon subunit [Mycobacterium gilvum PYR-GCK]
Length = 345
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 16/135 (11%)
Query: 51 ESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRF 110
+S +L+ P V + G+T E +E P F +V + +L GR HN+ F
Sbjct: 65 KSLYSLLDP----GVDPGPTHVHGLTAEMLEGQPTFGDVVGDLCEVLRGRTLVAHNV-GF 119
Query: 111 DCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAG----NMKMATLASYFGLGQQK- 165
D + + +G P ID++ + T + RR N+++ TLA+++G+ Q +
Sbjct: 120 DYSFLSAEAELVGAELP-----IDTV-MCTVELARRLDLGLENLRLETLAAHWGVTQMRP 173
Query: 166 HRSLDDVRMNLEVLK 180
H +LDD + ++LK
Sbjct: 174 HDALDDAMVLAQILK 188
>gi|407459193|ref|YP_006737296.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci M56]
gi|405786048|gb|AFS24793.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci M56]
Length = 228
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 73/161 (45%), Gaps = 15/161 (9%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
++F+D ETT + R ++E A + ESF T + P+ + ++S+ G
Sbjct: 4 LIFYDTETTGTQIDKDR--IIEIAAYNHKTK-----ESFVTYVNPE--IPIPEEASKIHG 54
Query: 75 ITREAVESAPEFEEVADKIFSIL--NGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
IT V SAP+F E A K F N V HN FD +++ P P+ +
Sbjct: 55 ITTSTVISAPKFPE-AYKDFCDFCGNQAVLVAHNNDSFDFPLLEKECRRHALP-PLSLKT 112
Query: 133 IDSLGVLTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDDV 172
IDSL +K+ + L +G + Q HR+LDDV
Sbjct: 113 IDSLK-WAQKYRPDLPKHNLQYLRQVYGFAENQAHRALDDV 152
>gi|406671775|ref|ZP_11079014.1| exonuclease, DNA polymerase III, epsilon subunit [Facklamia hominis
CCUG 36813]
gi|405581025|gb|EKB55084.1| exonuclease, DNA polymerase III, epsilon subunit [Facklamia hominis
CCUG 36813]
Length = 232
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 19/142 (13%)
Query: 34 VLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKI 93
++E G + V K+V+ +S LIKP+ + + GIT E V+ P + V + +
Sbjct: 31 IIEIGILKVRDNKIVD--RYSQLIKPQ--YEIDSFITSLTGITNEMVKDMPAIDFVMNDV 86
Query: 94 FSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRR----AGN 149
S + V GHN FD F G + ID++ +F R+ +
Sbjct: 87 LSFIGMDVIIGHN-TSFDI-----RFLNAGFKIELDNKYIDTM-----QFARKLFPELNH 135
Query: 150 MKMATLASYFGLGQQKHRSLDD 171
+++ L SY GL +HRS+ D
Sbjct: 136 HRLSDLTSYLGLSNNEHRSISD 157
>gi|120554453|ref|YP_958804.1| DNA polymerase III subunit epsilon [Marinobacter aquaeolei VT8]
gi|120324302|gb|ABM18617.1| DNA polymerase III, epsilon subunit [Marinobacter aquaeolei VT8]
Length = 236
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 14/168 (8%)
Query: 16 VFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+ D ETT + G R ++E G + V R+L ++ I P+ V ++ G
Sbjct: 4 IVLDTETTGIDPNEGHR--IIEIGCVEVIERELTG-RNYHVYINPE--REVEAEAITVHG 58
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPA---PVPVG 131
IT E + P+F EVAD+ F + G HN FD + FA + KP G
Sbjct: 59 ITNEFLADKPKFAEVADEFFEFIKGAELVIHNA-AFDVGFMDSEFARL-KPVRKTADHCG 116
Query: 132 MIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
++DSL + +K + N+ L +G+ +R L ++ E+L
Sbjct: 117 IVDSLAIARKKHPGQKNNLD--ALCKRYGV-DNSNRDLHGALLDAEIL 161
>gi|390567572|ref|ZP_10247900.1| DNA polymerase III subunit epsilon [Burkholderia terrae BS001]
gi|389940473|gb|EIN02274.1| DNA polymerase III subunit epsilon [Burkholderia terrae BS001]
Length = 392
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 8/123 (6%)
Query: 1 MDGFIPSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK 60
M + S+ A IVF DLETT R + E G + + P +++TL+ P
Sbjct: 1 MSELLLSEPALDVPIVFVDLETTGGSVGDHR--ITEIGVVELGPDGA---STWTTLVDPG 55
Query: 61 DLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFA 120
+ + GIT V AP FE +A +F+ L+G+++ HN FD ++ F
Sbjct: 56 --QPIPPFIQQLTGITNAMVRGAPTFESIAADLFARLDGKLFIAHNA-NFDRGFLRSEFQ 112
Query: 121 EIG 123
+G
Sbjct: 113 RVG 115
>gi|387814171|ref|YP_005429654.1| DNA polymerase III subunit epsilon [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381339184|emb|CCG95231.1| DNA polymerase III epsilon subunit [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 236
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 14/168 (8%)
Query: 16 VFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+ D ETT + G R ++E G + V R+L ++ I P+ V ++ G
Sbjct: 4 IVLDTETTGIDPNEGHR--IIEIGCVEVIERELTG-RNYHVYINPE--REVEAEAITVHG 58
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPA---PVPVG 131
IT E + P+F EVAD+ F + G HN FD + FA + KP G
Sbjct: 59 ITNEFLADKPKFAEVADEFFEFIKGAELVIHNA-AFDVGFMDSEFARL-KPVRKTADHCG 116
Query: 132 MIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
++DSL + +K + N+ L +G+ +R L ++ E+L
Sbjct: 117 IVDSLAIARKKHPGQKNNLD--ALCKRYGV-DNSNRDLHGALLDAEIL 161
>gi|333027027|ref|ZP_08455091.1| putative DNA polymerase III [Streptomyces sp. Tu6071]
gi|332746879|gb|EGJ77320.1| putative DNA polymerase III [Streptomyces sp. Tu6071]
Length = 611
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 53 FSTLIKPK-DLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFD 111
FSTL+ P D V + G+TRE + AP F+++A ++ ++L RV HN +FD
Sbjct: 55 FSTLVDPGCDPGPVDVH-----GLTRERLSGAPAFDQIAGRLGAMLQDRVLVAHNA-QFD 108
Query: 112 CARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRSLD 170
+ FA PV + L + +MK+ +LA+++G+ + + H +LD
Sbjct: 109 YDFLAHEFARARLYLPVTRRLCTL--ALNRQVDPPTRDMKLDSLAAHYGVPRTRAHDALD 166
Query: 171 DVRM 174
D R+
Sbjct: 167 DTRV 170
>gi|317059014|ref|ZP_07923499.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
gi|313684690|gb|EFS21525.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
Length = 1450
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 88/210 (41%), Gaps = 19/210 (9%)
Query: 7 SQAAGTAEIVFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAV 65
Q A V +DLET G+ ++E GA+ + +++V+ FS L+ P ++
Sbjct: 416 DQDLEKASFVVYDLETLGFNSHEGK---IIEIGAVKIVEKRIVD--RFSQLVNPG--QSI 468
Query: 66 ALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKP 125
IT V++ P EEV K + G + HN FD +K+ + G
Sbjct: 469 PQNIVDVTNITDSMVQNEPNIEEVLPKFLDFIEGSILVAHN-ADFDIGYLKQQCKQQGYS 527
Query: 126 APVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHCAT 184
P ID+L + + + + L GL + HR++DD + +
Sbjct: 528 DFNP-SFIDTLQMAKDLYPELK-QFGLGPLNKKLGLSLENHHRAVDDCQATGNMF----- 580
Query: 185 VLFLESSLPNTFN--SNLQSSLTVTTRSRS 212
++FL+ L + S +Q + V T+ ++
Sbjct: 581 LIFLDKYLDQGIHKLSEMQGAFPVNTKKQN 610
>gi|451941314|ref|YP_007461951.1| DNA polymerase III subunit epsilon [Bartonella vinsonii subsp.
berkhoffii str. Winnie]
gi|451900701|gb|AGF75163.1| DNA polymerase III subunit epsilon [Bartonella vinsonii subsp.
berkhoffii str. Winnie]
Length = 235
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 8/164 (4%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
+ FD ETT + R ++E G + + R L F + P+ + + + G+
Sbjct: 4 IIFDTETTGLDKEKDR--IIEIGCVEMVDRYLTG-RRFHVYLNPQGI-VIPDEVVAIHGL 59
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
T E +++ F ++AD+ +NG HN FD + + KP ++D+
Sbjct: 60 TNERLKNEKSFSDIADEFLEFINGATMIAHN-ANFDIGFLNAELGRVNKPLISVDNILDT 118
Query: 136 LGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
L + KF G + L FG+ HR L ++ E+L
Sbjct: 119 LAMARRKF--PMGPNSLDVLCKRFGI-DNSHRVLHGALLDAEIL 159
>gi|78065586|ref|YP_368355.1| DNA polymerase III subunit epsilon [Burkholderia sp. 383]
gi|77966331|gb|ABB07711.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383]
Length = 378
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 6 PSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAV 65
PS A +VF DLETT A R + E G + + P + + +++TL+ P +
Sbjct: 7 PSDPASEQPLVFVDLETTGGSPAEHR--ITEIGVVEIGP---LGVSTWTTLVNPG--QPI 59
Query: 66 ALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
+ GI+ E V AP F +A +F L+G+++ HN FD ++ F G
Sbjct: 60 PPFIQQLTGISDEMVRDAPSFASLAPALFERLDGKLFVAHNA-SFDRGFLRAEFERAG 116
>gi|419783186|ref|ZP_14308977.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus oralis SK610]
gi|383182340|gb|EIC74895.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus oralis SK610]
Length = 830
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 91/208 (43%), Gaps = 19/208 (9%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V DLE T G + +++ G +++ ++++ ++T + P + +K G+
Sbjct: 10 VVVDLEAT---STGSKAKIIQVGIVVIENGEIID--QYATDVNPHEPLDSHIKE--LTGL 62
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVP-VGMID 134
T + + +APEF +VA KIF ++ ++ HN+ +FD + E G P V ++
Sbjct: 63 TDQRLAAAPEFSQVAGKIFELVKDGIFVAHNV-QFDANLLAEFLFFEGYELRTPRVDTVE 121
Query: 135 SLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHCATVLF-----L 188
VL +F + + L G+ + H +L D + E+L + LF L
Sbjct: 122 LAQVLYPQFEK----YNLGILCQELGIELEHAHTALSDAQATAELLLYMRQKLFELPKGL 177
Query: 189 ESSLPNTFNSNLQSSLTVTTRSRSNGKL 216
SL N ++ L S V + L
Sbjct: 178 LESLLNLADNLLYESYLVIEEAYQQQSL 205
>gi|418159664|ref|ZP_12796363.1| exonuclease family protein [Streptococcus pneumoniae GA17227]
gi|419520922|ref|ZP_14060518.1| exonuclease family protein [Streptococcus pneumoniae GA05245]
gi|353821397|gb|EHE01573.1| exonuclease family protein [Streptococcus pneumoniae GA17227]
gi|379539936|gb|EHZ05113.1| exonuclease family protein [Streptococcus pneumoniae GA05245]
Length = 196
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 26/161 (16%)
Query: 49 ELESFSTLIKPKDLSAVALKS--SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHN 106
E++++ + + ++V LKS + GIT E ++ AP E+V ++ + + G+N
Sbjct: 36 EIDAYDSYVH----TSVPLKSFINGLTGITAETLKDAPPVEKVLEEFQEFVGSLLMIGYN 91
Query: 107 IRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRA------GNMKMATLASYFG 160
+ D + E + + V + E F RR+ N+K+ T+AS+ G
Sbjct: 92 AVKSDLPILAEHGLDYSQQYKVDL--------YDEAFERRSSDLHGIANLKLQTVASFLG 143
Query: 161 LGQQKHRSLDDVRMNLEVLK------HCATVLFLESSLPNT 195
Q H SL+D RM V + +L ESSL N
Sbjct: 144 FQGQSHNSLEDARMTARVYESFLESDQARELLETESSLSNN 184
>gi|417937794|ref|ZP_12581094.1| DNA polymerase III, epsilon subunit [Streptococcus infantis SK970]
gi|343392058|gb|EGV04631.1| DNA polymerase III, epsilon subunit [Streptococcus infantis SK970]
Length = 196
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 25/151 (16%)
Query: 49 ELESFSTLIKPKDLSAVALKS--SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHN 106
E+E+F + + S V LKS + GIT E +++AP+ EEV K + G+N
Sbjct: 36 EVEAFDSYVH----SDVPLKSFINGLTGITSETLKNAPKVEEVLQKFQDFVGDLPLVGYN 91
Query: 107 IRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRA------GNMKMATLASYFG 160
+ D + E + + V + E RR+ N+K+ T+A++ G
Sbjct: 92 AAKSDLPILLEHGLDYREQYLVDL--------YNEALERRSSDLHGIANLKLQTVANFLG 143
Query: 161 LGQQKHRSLDDVRMNLEVLKHCATVLFLESS 191
Q H SL+D RM V + +FLES
Sbjct: 144 FKGQSHNSLEDARMTARVYE-----VFLESD 169
>gi|423343611|ref|ZP_17321324.1| exonuclease, DNA polymerase III, epsilon subunit [Parabacteroides
johnsonii CL02T12C29]
gi|409214633|gb|EKN07642.1| exonuclease, DNA polymerase III, epsilon subunit [Parabacteroides
johnsonii CL02T12C29]
Length = 260
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+VFFDLETT R ++E + V P + ES + I P+ + +S+ G
Sbjct: 9 LVFFDLETTGINIVKDR--IVEISFVKVYPNG--KEESKTRRINPE--MPIPPESTAIHG 62
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
IT E V+ P F+E+A + + + G AG+N RFD + E F G
Sbjct: 63 ITDEDVKDCPTFKEIAKSLATQIEGCDLAGYNSNRFDIPLLAEEFLRAG 111
>gi|319403493|emb|CBI77072.1| DNA polymerase III epsilon chain [Bartonella rochalimae ATCC
BAA-1498]
Length = 235
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 86/226 (38%), Gaps = 30/226 (13%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDL----SAVALKSSR 71
+ FD ETT + R ++E G I + R L F + P+D+ VA+
Sbjct: 4 IIFDTETTGLNKESDR--IIEIGCIEMINRYLTG-RRFHVYLNPQDVIIPDEVVAIH--- 57
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
G+T E ++ +F+++ D + ++ HN FD + + KP
Sbjct: 58 --GLTNERLKDEKKFDDIVDALLDFIDDATIVAHN-ANFDIGFLNAELERVNKPLINSDN 114
Query: 132 MIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLF---- 187
+ID+L + +F G + L FG+ HR L ++ E+L L
Sbjct: 115 VIDTLSIARRRFP--MGPNSLDVLCKRFGI-DNSHRVLHGALLDAEILADVYIELIGGKQ 171
Query: 188 -------LESSLPNTFNSNLQSSLTVTTRSRSNGKLPCREETSRKS 226
ES N + T+ TRS++ LP R K
Sbjct: 172 GIFSFDNYESCDVMNVQDNKNAFYTIKTRSQA---LPQRLSKQEKD 214
>gi|288928331|ref|ZP_06422178.1| exonuclease [Prevotella sp. oral taxon 317 str. F0108]
gi|288331165|gb|EFC69749.1| exonuclease [Prevotella sp. oral taxon 317 str. F0108]
Length = 284
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 8/113 (7%)
Query: 12 TAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
T +V FDLETT R +++ I + P E E+ L+ P+ + + S
Sbjct: 6 TRPLVVFDLETTGLDLVNDR--IIQISYIKIYPDGKEERENL--LVYPQ--RPIPDEVSE 59
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAF--AEI 122
GIT + VE AP FEE+A ++ + G +AG N FD + E F AEI
Sbjct: 60 LTGITTDLVEDAPTFEELAPRLNEVFKGCDFAGFNSNHFDIPMLAEEFLRAEI 112
>gi|407451349|ref|YP_006723073.1| hypothetical protein B739_0570 [Riemerella anatipestifer RA-CH-1]
gi|403312333|gb|AFR35174.1| hypothetical protein B739_0570 [Riemerella anatipestifer RA-CH-1]
Length = 407
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 66/133 (49%), Gaps = 9/133 (6%)
Query: 50 LESFSTLIKPK-DLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIR 108
++ F +++ P+ D+S + GIT + V++AP+F E+A +I I G GHN+
Sbjct: 33 VDQFISMVNPEADISHFV---QKLTGITPKMVKTAPKFHEIAKRIIEITEGSTLVGHNV- 88
Query: 109 RFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHR 167
FD ++++F +G + +D++ L +K + + L G+ + HR
Sbjct: 89 DFDYRMLRQSFKRLG--YHFSIETLDTIP-LAKKLIPNEESYSLGKLVKSLGIPLAEHHR 145
Query: 168 SLDDVRMNLEVLK 180
+ D R L++ K
Sbjct: 146 ASSDARATLDLFK 158
>gi|384048010|ref|YP_005496027.1| DnaQ family exonuclease/DinG family helicase [Bacillus megaterium
WSH-002]
gi|345445701|gb|AEN90718.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
megaterium WSH-002]
Length = 933
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 12/113 (10%)
Query: 15 IVFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKP-KDLSAVALKSSR 71
V DLETT P++ + +++F A+IV K+VE FS+ + P D+ ++
Sbjct: 5 FVVVDLETTGHSPKQGDK---MIQFAAVIVEDGKIVE--RFSSFLNPGMDIPPFI---TQ 56
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGK 124
I + V+ AP FEE++ KI +L+ + HN+ FD ++E + G+
Sbjct: 57 LTNIQNDMVKDAPLFEEISPKIIELLDDAYFVAHNV-AFDLTFLQEELYQCGR 108
>gi|387893640|ref|YP_006323937.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens A506]
gi|423691278|ref|ZP_17665798.1| DNA polymerase III, epsilon subunit [Pseudomonas fluorescens SS101]
gi|387160765|gb|AFJ55964.1| DNA polymerase III, epsilon subunit [Pseudomonas fluorescens A506]
gi|387999293|gb|EIK60622.1| DNA polymerase III, epsilon subunit [Pseudomonas fluorescens SS101]
Length = 248
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 16 VFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK---DLSAVALKSSR 71
V D ETT +P G R ++E G + + R+L F ++P D A+ +
Sbjct: 6 VVLDTETTGMPVTDGHR--IIEIGCVELMGRRLTG-RHFHVYLQPDRDSDEGAIGVH--- 59
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGK 124
GIT E ++ P F EVAD+ F +NG HN FD I FA +G+
Sbjct: 60 --GITDEFLKGKPRFAEVADEFFEFINGAQLIIHNA-AFDIGFINNEFALMGQ 109
>gi|348171463|ref|ZP_08878357.1| hypothetical protein SspiN1_13234 [Saccharopolyspora spinosa NRRL
18395]
Length = 572
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 70/166 (42%), Gaps = 10/166 (6%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V DLETT R G V E GA+ V R L F+TL+ P ++ S GI
Sbjct: 26 VVVDLETTGGDRDGDA--VTEIGAVKV--RGGEVLGEFATLVNPDRGIPPSIVS--ITGI 79
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
T V AP F+ V G V HN FD ++ +G P P ++D+
Sbjct: 80 TEAMVVDAPRFDAVLPAFLEFCRGSVLVAHNA-PFDIGFLRSNCERLGLRWPKP-QVVDT 137
Query: 136 LGVLTEKFGR-RAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVL 179
+ + R N K+ TLA HR+LDD R ++VL
Sbjct: 138 VRLSRRVLTRDETPNHKLGTLARVLNARTVPVHRALDDARATVDVL 183
>gi|326333554|ref|ZP_08199794.1| putative DNA polymerase III, epsilon subunit [Nocardioidaceae
bacterium Broad-1]
gi|325948663|gb|EGD40763.1| putative DNA polymerase III, epsilon subunit [Nocardioidaceae
bacterium Broad-1]
Length = 580
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 71/165 (43%), Gaps = 13/165 (7%)
Query: 19 DLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGIT 76
DLETT P G + E GA+ V R L F TL+ P + + + GIT
Sbjct: 48 DLETTGNSPDNGGM---ITEIGAVKV--RGGEVLGEFQTLVNPH--TGIPPSIAVLTGIT 100
Query: 77 REAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSL 136
V S+P E V G V HN FD +K A+ +P P ++D++
Sbjct: 101 NSMVASSPTIESVLPAFLEFAEGCVLVAHNA-PFDVGFLKHFAAKQERPWPR-FEVLDTV 158
Query: 137 GVLTEKFGR-RAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVL 179
+ R A N K+ +LA FG HR+L D R ++VL
Sbjct: 159 KIARRVITRDEAPNHKLGSLARVFGSPTTPNHRALQDARATVDVL 203
>gi|154492230|ref|ZP_02031856.1| hypothetical protein PARMER_01864 [Parabacteroides merdae ATCC
43184]
gi|423722175|ref|ZP_17696351.1| exonuclease, DNA polymerase III, epsilon subunit [Parabacteroides
merdae CL09T00C40]
gi|154087455|gb|EDN86500.1| exonuclease, DNA polymerase III, epsilon subunit family
[Parabacteroides merdae ATCC 43184]
gi|409242666|gb|EKN35427.1| exonuclease, DNA polymerase III, epsilon subunit [Parabacteroides
merdae CL09T00C40]
Length = 256
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+VFFDLETT R ++E + V P + ES + I P+ + +S+ G
Sbjct: 9 LVFFDLETTGINIVKDR--IVEISFVKVYPNG--KEESKTRRINPE--MPIPPESTAIHG 62
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
IT E V+ P F+E+A + + + G AG+N RFD + E F G
Sbjct: 63 ITDEDVKDCPTFKEIAKSLAAQIEGCDLAGYNSNRFDIPLLAEEFLRAG 111
>gi|377564581|ref|ZP_09793896.1| DNA polymerase III epsilon subunit [Gordonia sputi NBRC 100414]
gi|377528158|dbj|GAB39061.1| DNA polymerase III epsilon subunit [Gordonia sputi NBRC 100414]
Length = 617
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 74/172 (43%), Gaps = 16/172 (9%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK---DLSAVALKSSR 71
+V DLETT R + E GA+ + R L F+TL+ P VAL
Sbjct: 51 LVVVDLETTGGSATNDR--ITEIGAVKI--RGGEVLGEFATLVDPGLPIPPQIVALT--- 103
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GIT V AP +EV G + HN RFD + +++ + P
Sbjct: 104 --GITEAMVYDAPRIDEVLPSFIEFARGSILVAHNA-RFDMSFLRQNALRLHLQWPFSAT 160
Query: 132 MIDSLGVLTEKFGR-RAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKH 181
+ ++ + GR A ++++ LA F + + HR+LDD R +EV H
Sbjct: 161 LC-TVTMARRILGRDEAPTVRLSALADLFDVTVRPTHRALDDARATVEVFHH 211
>gi|227499278|ref|ZP_03929390.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098]
gi|227218629|gb|EEI83863.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098]
Length = 1358
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Query: 6 PSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAV 65
P + V FDLETT R R + E GA V K+ E+ ++ L+ P+ L +
Sbjct: 333 PIKKIEEGSFVVFDLETTGLSRYRDR--ITEIGACKVIDGKICEI--YNELVNPEML--I 386
Query: 66 ALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
K + GIT + VES P+ EEV G + G N FD ++E +G
Sbjct: 387 PEKITEITGITNQMVESCPKIEEVLPGFLEFCQGSILVGQNT-DFDVGFVRENCTRLG 443
>gi|347534380|ref|YP_004841050.1| hypothetical protein LSA_07000 [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504436|gb|AEN99118.1| hypothetical protein LSA_07000 [Lactobacillus sanfranciscensis TMW
1.1304]
Length = 945
Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 50 LESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
++S+ST I D ++ + S GIT E +++AP F++VA I+ L V+ HN+
Sbjct: 47 IDSYSTYIN--DGVEISEEISNLTGITSETIKNAPTFDQVAATIYKKLKNTVFVAHNV-N 103
Query: 110 FDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGL 161
FD + ++G P + + ID++ LT+ F + +++ L+S+F +
Sbjct: 104 FDFPFLNAFLEKVGFPE-LDIPAIDTVS-LTQIFFPTLNSYRLSDLSSHFNI 153
>gi|329942731|ref|ZP_08291510.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydophila psittaci Cal10]
gi|332287328|ref|YP_004422229.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
gi|384450477|ref|YP_005663077.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
gi|384451482|ref|YP_005664080.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 01DC11]
gi|384452455|ref|YP_005665052.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 08DC60]
gi|384453431|ref|YP_005666027.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci C19/98]
gi|384454410|ref|YP_005667005.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 02DC15]
gi|392376569|ref|YP_004064347.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci RD1]
gi|406592232|ref|YP_006739412.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci CP3]
gi|406594865|ref|YP_006741541.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci MN]
gi|407453903|ref|YP_006733011.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci 84/55]
gi|407455216|ref|YP_006734107.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci GR9]
gi|407456599|ref|YP_006735172.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci VS225]
gi|407457950|ref|YP_006736255.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci WS/RT/E30]
gi|407460568|ref|YP_006738343.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci WC]
gi|410858352|ref|YP_006974292.1| DNA polymerase III, epsilon chain [Chlamydia psittaci 01DC12]
gi|449071029|ref|YP_007438109.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci Mat116]
gi|313847912|emb|CBY16907.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci RD1]
gi|325506611|gb|ADZ18249.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
gi|328814991|gb|EGF84980.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydophila psittaci Cal10]
gi|328914571|gb|AEB55404.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci 6BC]
gi|334692212|gb|AEG85431.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci C19/98]
gi|334693192|gb|AEG86410.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 01DC11]
gi|334694167|gb|AEG87384.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 02DC15]
gi|334695144|gb|AEG88360.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 08DC60]
gi|405780662|gb|AFS19412.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci 84/55]
gi|405781759|gb|AFS20508.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci GR9]
gi|405783297|gb|AFS22045.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci MN]
gi|405783860|gb|AFS22607.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci VS225]
gi|405785585|gb|AFS24331.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci WS/RT/E30]
gi|405787488|gb|AFS26232.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci WC]
gi|405788104|gb|AFS26847.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci CP3]
gi|410811247|emb|CCO01893.1| DNA polymerase III, epsilon chain [Chlamydia psittaci 01DC12]
gi|449039537|gb|AGE74961.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci Mat116]
Length = 228
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 73/161 (45%), Gaps = 15/161 (9%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
++F+D ETT + R ++E A + ESF T + P+ + ++S+ G
Sbjct: 4 LIFYDTETTGTQIDKDR--IIEIAAYNHKTK-----ESFVTYVNPE--IPIPEEASKIHG 54
Query: 75 ITREAVESAPEFEEVADKIFSIL--NGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
IT V SAP+F E A K F N V HN FD +++ P P+ +
Sbjct: 55 ITTSTVISAPKFPE-AYKHFCDFCGNEAVLVAHNNDSFDFPLLEKECRRHALP-PLSLKT 112
Query: 133 IDSLGVLTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDDV 172
IDSL +K+ + L +G + Q HR+LDDV
Sbjct: 113 IDSLK-WAQKYRPDLPKHNLQYLRQVYGFAENQAHRALDDV 152
>gi|197335831|ref|YP_002156764.1| DNA polymerase III subunit epsilon [Vibrio fischeri MJ11]
gi|197317321|gb|ACH66768.1| DNA polymerase III, epsilon subunit [Vibrio fischeri MJ11]
Length = 223
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 12/158 (7%)
Query: 25 PRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAP 84
P G R ++E GA+ + RKL F IKP L + L++ GIT E + P
Sbjct: 7 PVYEGHR--IVEIGAVEIINRKLTG-NHFHVYIKPDRL--IDLEAIDVHGITDEFLYDKP 61
Query: 85 EFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGK---PAPVPVGMIDSLGVLTE 141
E++++ D+ + G HN FD + F+++ K + D+L + +
Sbjct: 62 EYKDIHDEFLEFIKGAELVAHN-APFDVGFMDYEFSKLNKLIGTTDQYCKITDTLAMAKK 120
Query: 142 KFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVL 179
F + N+ + L +G+ HR+L ++ E+L
Sbjct: 121 IFPGKRNNLDV--LCERYGI-DNSHRTLHGALLDAEIL 155
>gi|421240549|ref|ZP_15697096.1| exonuclease family protein [Streptococcus pneumoniae 2080913]
gi|395609131|gb|EJG69221.1| exonuclease family protein [Streptococcus pneumoniae 2080913]
Length = 196
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 26/161 (16%)
Query: 49 ELESFSTLIKPKDLSAVALKS--SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHN 106
E++++ + + ++V LKS + GIT E ++ AP E++ ++ + + G+N
Sbjct: 36 EIDAYDSYVH----TSVPLKSFINGLTGITAETLKDAPPVEKILEEFQEFVGSLLMIGYN 91
Query: 107 IRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRA------GNMKMATLASYFG 160
+ D + E + + V + E F RR+ N+K+ T+AS+ G
Sbjct: 92 AAKSDLPILAEHGLDYSQQYKVDL--------YDEAFERRSSDLHGIANLKLQTVASFLG 143
Query: 161 LGQQKHRSLDDVRMNLEVLK------HCATVLFLESSLPNT 195
Q H SL+D RM V + +L ESSL N
Sbjct: 144 FQGQSHNSLEDARMTARVYESFLESDQARELLETESSLSNN 184
>gi|346224622|ref|ZP_08845764.1| exonuclease family protein [Anaerophaga thermohalophila DSM 12881]
Length = 460
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 19 DLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE 78
D+ETT + R + E I+ K+V+ F +L+ P+ S + SR GIT +
Sbjct: 12 DIETTGGKAGQGR--ITEIAIFIMEGEKIVD--EFISLVNPE--SPIPPYISRLTGITNK 65
Query: 79 AVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
VE AP+F E+A +I I + + HN FD IK+ F +G
Sbjct: 66 MVEDAPKFYEIARRIVEITDDTFFVAHNA-SFDYNFIKKEFESLG 109
>gi|296166059|ref|ZP_06848506.1| DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295898580|gb|EFG78139.1| DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length = 648
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 72/175 (41%), Gaps = 22/175 (12%)
Query: 16 VFFDLETTVPRR----AGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
V DLETT R + E GA+ V R V L F+TL+ P+ ++ + R
Sbjct: 44 VVVDLETTGGRTKATGGNAPDAITEIGAVKV--RGGVVLGEFATLVDPE--RSIPPQIVR 99
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GIT V AP + V V HN FD ++ A A P P
Sbjct: 100 LTGITTAMVSDAPRIDAVLPMFLEFAGDAVLVAHNAG-FDIGFLRAAAARCDIAWPRPKV 158
Query: 132 MIDSLGVLTEKFGRR------AGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVL 179
+ T + RR A ++++ LA F + Q HR+LDD R +EVL
Sbjct: 159 LC------TVRLARRVLSREEAPSVRLGALARLFAVAAQPTHRALDDARATVEVL 207
>gi|407714465|ref|YP_006835030.1| DNA polymerase III subunit epsilon [Burkholderia phenoliruptrix
BR3459a]
gi|407236649|gb|AFT86848.1| DNA polymerase III subunit epsilon [Burkholderia phenoliruptrix
BR3459a]
Length = 381
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
IVF DLETT + R + E G + V P + +S+L+ P+ + + G
Sbjct: 10 IVFVDLETTGGSTSEHR--ITEVGVVEVGPTGVTR---WSSLVDPQ--QPIPSFIQQLTG 62
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
IT V AP FE +A +F+ L+G+++ HN FD ++ F +G
Sbjct: 63 ITNAMVRGAPTFEAIAPDLFARLDGKLFVAHNA-SFDRGFLRGEFRRVG 110
>gi|119026003|ref|YP_909848.1| putative DNA polymerase III subunit epsilon [Bifidobacterium
adolescentis ATCC 15703]
gi|118765587|dbj|BAF39766.1| putative DNA polymerase III epsilon subunit [Bifidobacterium
adolescentis ATCC 15703]
Length = 207
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 15/158 (9%)
Query: 19 DLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITR 77
D ETT + G R +E G + V P +E E TLI ++ +S IT
Sbjct: 10 DFETTGLSPAKGDR--AIEIGLVHVAPDGTLEDEH-ETLIHVDR----SVGASWVHHITA 62
Query: 78 EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLG 137
+ AP+FE +A ++ +L GRV+ HN+ FD + ++ +G PV S
Sbjct: 63 RELLHAPDFEGIAHELRDLLAGRVFVAHNV-SFDSRFLLAEYSRMGASIPVD----QSTM 117
Query: 138 VLTEKFGRR-AGNMKMATLASYFGLGQQK-HRSLDDVR 173
+ T K R G K+A YFG+ + H +L D
Sbjct: 118 LCTMKLSRSLIGRGKLADCCEYFGIANEDAHSALSDAH 155
>gi|399526838|ref|ZP_10766581.1| exonuclease [Actinomyces sp. ICM39]
gi|398362572|gb|EJN46258.1| exonuclease [Actinomyces sp. ICM39]
Length = 551
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 76/171 (44%), Gaps = 16/171 (9%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V DLETT G + E GA++V R ++ FS+L+KP + S GI
Sbjct: 31 VVVDLETT---GLGAGAEITEIGAVLV--RDGAVVDEFSSLVKPSRPIPPFITS--LTGI 83
Query: 76 TREAVESAPEFEEVADKI--FSILNGR---VWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
T V A V ++ +S L V HN FD ++ A +P P V
Sbjct: 84 TPAMVADADPIAAVLERFMEWSSLGAERSPVLVAHNAS-FDVGFLRRAARACSRPWPR-V 141
Query: 131 GMIDSLGVLTEKFGRR-AGNMKMATLASYFGLGQ-QKHRSLDDVRMNLEVL 179
++D+L + R N K+ T+ASYFG +HR+L D R E+L
Sbjct: 142 RVVDTLALARLALPRPLVRNHKLGTIASYFGTATVPEHRALGDARATAEIL 192
>gi|357638063|ref|ZP_09135936.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus urinalis 2285-97]
gi|418416075|ref|ZP_12989274.1| exonuclease, DNA polymerase III, epsilon subunit [Streptococcus
urinalis FB127-CNA-2]
gi|357586517|gb|EHJ55925.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus urinalis 2285-97]
gi|410873893|gb|EKS21824.1| exonuclease, DNA polymerase III, epsilon subunit [Streptococcus
urinalis FB127-CNA-2]
Length = 818
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 9/147 (6%)
Query: 34 VLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKI 93
+++ G +I+C K+++ F T + P A++ + GIT + ++ AP+F +VA KI
Sbjct: 25 IIQVGIVIICDGKVID--HFETDVNPH--MALSDHIIQLTGITDKQLKKAPDFSQVASKI 80
Query: 94 FSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMA 153
+ ++ V+ HN+ +FD + E G P ID++ L++ +
Sbjct: 81 YEMIKDCVFVAHNV-KFDANLLAEHLFLEGYELRTP--RIDTVE-LSQIVFPTLEKYSLG 136
Query: 154 TLASYFGLG-QQKHRSLDDVRMNLEVL 179
+LA Y + Q H ++ D E+
Sbjct: 137 SLAHYLDIDLQNAHTAIADAMATAELF 163
>gi|297817898|ref|XP_002876832.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297322670|gb|EFH53091.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 386
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 89 VADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAG 148
V ++F ILNG++W G++ D +K F P+ ID+ E F R
Sbjct: 43 VYSRVFEILNGKIWMGYDKNLSD---LKNLFNANFHACPIAKYEIDTTKWFAENFDGRID 99
Query: 149 NMKMATLASYFGLG------QQKHRSLDDVRMNLEVLK 180
NM + ++ YF L Q ++ + D ++++V+K
Sbjct: 100 NMSLEGVSDYFKLDVEKYEKQSSYKVVRDCHLHIQVIK 137
>gi|150020931|ref|YP_001306285.1| DNA polymerase III PolC [Thermosipho melanesiensis BI429]
gi|149793452|gb|ABR30900.1| DNA polymerase III, alpha subunit [Thermosipho melanesiensis BI429]
Length = 1362
Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 11/164 (6%)
Query: 18 FDLETTVPRRAGQRF-WVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGIT 76
FDLETT +F ++E GA+ K++ +FS+ +KP +++ + + GIT
Sbjct: 347 FDLETT---GTNAKFDEIIEIGAVKYRDGKVIN--TFSSFVKPT--KSISEFTQKLTGIT 399
Query: 77 REAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSL 136
E V+ A EEV + ++G V HN FD I+E + + +D+L
Sbjct: 400 DEMVKDAKSIEEVFPEFLKFIDGTVLVAHNA-DFDYGFIREVNRRLYN-KELDFAYLDTL 457
Query: 137 GVLTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVL 179
+ + + + L YF LG K HR+ +D + ++
Sbjct: 458 KLSKVLLRGKVKSFGLGKLVEYFKLGPFKHHRAFEDASVTADLF 501
>gi|15639630|ref|NP_219080.1| DNA polymerase III, subunit epsilon (dnaQ) [Treponema pallidum
subsp. pallidum str. Nichols]
gi|189025868|ref|YP_001933640.1| DNA polymerase III, subunit epsilon [Treponema pallidum subsp.
pallidum SS14]
gi|378973151|ref|YP_005221756.1| DNA-directed DNA polymerase III epsilon subunit [Treponema pallidum
subsp. pertenue str. SamoaD]
gi|378974218|ref|YP_005222825.1| DNA-directed DNA polymerase III epsilon subunit [Treponema pallidum
subsp. pertenue str. Gauthier]
gi|378975276|ref|YP_005223885.1| DNA-directed DNA polymerase III epsilon subunit [Treponema pallidum
subsp. pallidum DAL-1]
gi|378982127|ref|YP_005230433.1| DNA-directed DNA polymerase III epsilon subunit [Treponema pallidum
subsp. pertenue str. CDC2]
gi|384422147|ref|YP_005631506.1| DNA polymerase III subunit epsilon [Treponema pallidum subsp.
pallidum str. Chicago]
gi|408502505|ref|YP_006869949.1| DNA-directed DNA polymerase III epsilon subunit [Treponema pallidum
subsp. pallidum str. Mexico A]
gi|6014996|sp|O83649.1|DPO3E_TREPA RecName: Full=DNA polymerase III subunit epsilon
gi|3322942|gb|AAC65617.1| DNA polymerase III, subunit epsilon (dnaQ) [Treponema pallidum
subsp. pallidum str. Nichols]
gi|189018443|gb|ACD71061.1| DNA polymerase III, subunit epsilon [Treponema pallidum subsp.
pallidum SS14]
gi|291060013|gb|ADD72748.1| DNA polymerase III subunit epsilon [Treponema pallidum subsp.
pallidum str. Chicago]
gi|374677475|gb|AEZ57768.1| DNA-directed DNA polymerase III epsilon subunit [Treponema pallidum
subsp. pertenue str. SamoaD]
gi|374678545|gb|AEZ58837.1| DNA-directed DNA polymerase III epsilon subunit [Treponema pallidum
subsp. pertenue str. CDC2]
gi|374679614|gb|AEZ59905.1| DNA-directed DNA polymerase III epsilon subunit [Treponema pallidum
subsp. pertenue str. Gauthier]
gi|374680675|gb|AEZ60965.1| DNA-directed DNA polymerase III epsilon subunit [Treponema pallidum
subsp. pallidum DAL-1]
gi|408475868|gb|AFU66633.1| DNA-directed DNA polymerase III epsilon subunit [Treponema pallidum
subsp. pallidum str. Mexico A]
Length = 215
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 10/164 (6%)
Query: 18 FDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITR 77
FD ETT + R ++E GA+ + ++ FSTLI P A+ S+ + IT
Sbjct: 18 FDTETTGLKAEEDR--IIEIGAVTFDRKGIIA--RFSTLIFPD--RAIPPDVSKINHITD 71
Query: 78 EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLG 137
+ + + P F E+ + G V HN FD + + + K P+ ++D+
Sbjct: 72 DMLVNKPRFCEIVSDFSRFIKGTVLVAHN-ANFDVEFLNAELS-LCKKQPLSHKVVDTYA 129
Query: 138 VLTEKF-GRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
+ F G ++ LA FGL HR+ DD R+ +E+
Sbjct: 130 MAQAVFPGLGRHQYRLQNLALQFGLTVHAAHRAEDDARVCMELF 173
>gi|408482157|ref|ZP_11188376.1| DNA polymerase III subunit epsilon [Pseudomonas sp. R81]
Length = 248
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 16 VFFDLETT-VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPK---DLSAVALKSSR 71
V D ETT +P G R ++E G + + R+L F ++P D A+ +
Sbjct: 6 VVLDTETTGMPVTDGHR--IIEIGCVELMGRRLTG-RHFHVYLQPDRDSDEGAIGVH--- 59
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGK 124
GIT E ++ P F EVAD+ F +NG HN FD I FA +G+
Sbjct: 60 --GITDEFLKGKPRFAEVADEFFEFINGAQLIIHNA-AFDVGFINNEFALMGQ 109
>gi|346306727|ref|ZP_08848881.1| DNA polymerase III, alpha subunit, Gram-positive type [Dorea
formicigenerans 4_6_53AFAA]
gi|345908085|gb|EGX77753.1| DNA polymerase III, alpha subunit, Gram-positive type [Dorea
formicigenerans 4_6_53AFAA]
Length = 1395
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 13/165 (7%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V FDLETT A + ++E GA+ V ++ + +ST + PK + + ++ I
Sbjct: 353 VVFDLETTGFSSAKDK--IIEIGAVKVENGEITD--KYSTFVNPK--IPIPFRITQLTSI 406
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG-KPAPVPVGMID 134
T E V +PE E + + + V HN FD + I+E + G +P V +
Sbjct: 407 TDEMVMESPEIETILPQFLKFVGDAVLVAHN-ASFDVSFIEENCRQQGIEPNFTSVDTVG 465
Query: 135 SLGVLTEKFGRRAGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEV 178
VL + K+ +A + Q+ HR++DD R+ E+
Sbjct: 466 LARVLLPTLSK----FKLNVVAKALNISQEHHHRAVDDARVTAEI 506
>gi|218261817|ref|ZP_03476532.1| hypothetical protein PRABACTJOHN_02203, partial [Parabacteroides
johnsonii DSM 18315]
gi|218223763|gb|EEC96413.1| hypothetical protein PRABACTJOHN_02203 [Parabacteroides johnsonii
DSM 18315]
Length = 256
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDG 74
+VFFDLETT R ++E + V P + ES + I P+ + +S+ G
Sbjct: 9 LVFFDLETTGINIVKDR--IVEISFVKVYPNG--KEESKTRRINPE--MPIPPESTAIHG 62
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
IT E V+ P F+E+A + + + G AG+N RFD + E F G
Sbjct: 63 ITDEDVKDCPTFKEIAKSLATQIEGCDLAGYNSNRFDIPLLAEEFLRAG 111
>gi|120406462|ref|YP_956291.1| DNA polymerase III subunit epsilon [Mycobacterium vanbaalenii
PYR-1]
gi|119959280|gb|ABM16285.1| DNA polymerase III, epsilon subunit [Mycobacterium vanbaalenii
PYR-1]
Length = 333
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 12/176 (6%)
Query: 6 PSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAV 65
P+ G V D+ET+ R R ++ A+ + VE +S +L+ P V
Sbjct: 12 PADQPGAGWAVV-DVETSGFRPGQAR--IVSVAALALSDDGNVE-KSLYSLLDP----GV 63
Query: 66 ALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKP 125
+ G+T E + P F +V + +L GR HN+ FD + + A AE+
Sbjct: 64 DPGPTHVHGLTAEMLAGQPAFGDVVGDLIEVLRGRTLVAHNV-GFDYSFLT-AEAEMVH- 120
Query: 126 APVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK-HRSLDDVRMNLEVLK 180
A +PV + L + N+++ TLA+++G+ Q K H +LDD + ++LK
Sbjct: 121 AELPVDTVMCTVELARRLDLGLDNLRLETLAAHWGVTQMKPHDALDDAMVLAQILK 176
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,924,327,586
Number of Sequences: 23463169
Number of extensions: 147053606
Number of successful extensions: 355662
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 3274
Number of HSP's that attempted gapping in prelim test: 354473
Number of HSP's gapped (non-prelim): 3533
length of query: 277
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 137
effective length of database: 9,074,351,707
effective search space: 1243186183859
effective search space used: 1243186183859
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.9 bits)