BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023805
(277 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8RA32|DPO3_THETN DNA polymerase III PolC-type OS=Thermoanaerobacter tengcongensis
(strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
GN=polC PE=3 SV=1
Length = 1401
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 11/174 (6%)
Query: 7 SQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVA 66
S+A+ E V FD+ETT ++E GA+ + +K+V+ +F T + P+ ++
Sbjct: 380 SEASLEGEFVVFDIETTGLSNINDE--IIEIGAVKIKNKKIVD--TFETFVNPQ--IPIS 433
Query: 67 LKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPA 126
++ GI V+ AP EEV K G V HN FD + IK ++G
Sbjct: 434 SFITKLTGIDESMVKDAPLIEEVLPKFLEFAKGAVLVAHN-ANFDVSFIKSKAKKLG--L 490
Query: 127 PVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
V ++D+L L+ + N K+ TLA +F + HR+++D + E+
Sbjct: 491 TVENTVLDTLE-LSRHLYQDLKNYKLDTLAEFFEVKLLHHHRAVEDAKATAEIF 543
>sp|Q8XJR3|DPO3_CLOPE DNA polymerase III PolC-type OS=Clostridium perfringens (strain 13
/ Type A) GN=polC PE=3 SV=1
Length = 1449
Score = 58.9 bits (141), Expect = 4e-08, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 11/168 (6%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
E V FD+ETT + ++E GA+ + ++V+ SFST + PK + K +
Sbjct: 434 EYVVFDIETTGFSSKNDK--IIEIGAVKLKDGEIVD--SFSTFVDPK--VNIPYKITELT 487
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
IT+ V P +EV K + V HN FD IK+ ++GK PV +
Sbjct: 488 SITQNMVNGQPTIDEVLPKFMEFVGNSVLVAHNA-AFDVGFIKKNLMDMGKTLKNPV--M 544
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLK 180
D++ L +K+ +A + G+ + HR++DD + E+LK
Sbjct: 545 DTVP-LARYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILK 591
>sp|Q10384|Y2191_MYCTU Uncharacterized protein Rv2191/MT2247 OS=Mycobacterium tuberculosis
GN=Rv2191 PE=4 SV=1
Length = 645
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 82/204 (40%), Gaps = 31/204 (15%)
Query: 16 VFFDLETTVPRRAGQRF----WVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
V DLETT R G + E GA+ VC + L F+TL+ P+ ++ + R
Sbjct: 44 VVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAV--LGEFATLVNPQH--SIPPQIVR 99
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
GIT V +AP + V F V HN FD ++ A P P
Sbjct: 100 LTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNA-GFDIGFLRAAARRCDITWPQPQV 158
Query: 132 MIDSLGVLTEKFGRR------AGNMKMATLASYFGLGQQ-KHRSLDDVRMNLEVL----- 179
+ T + RR A ++++A LA F + HR+LDD R ++VL
Sbjct: 159 LC------TMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHALIE 212
Query: 180 ----KHCATVLFLESSLPNTFNSN 199
+ T L S LPN +
Sbjct: 213 RVGNQGVHTYAELRSYLPNVTQAQ 236
>sp|P47729|DPO3_MYCPU DNA polymerase III PolC-type OS=Mycoplasma pulmonis (strain UAB
CTIP) GN=polC PE=3 SV=2
Length = 1435
Score = 47.8 bits (112), Expect = 8e-05, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
E V +D+ETT +++FGA ++ +++E F IKPK S + +++
Sbjct: 403 EYVVYDIETTGLSPMLNE--LIQFGASVIKNGRIIETHHF--FIKPK--SKLDSFTTKLT 456
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAE 121
GIT+E +E E +E +KI SI R+ HN FD +K+ F +
Sbjct: 457 GITQEHLEKGYELQEALEKISSIFKARIMVAHNA-AFDHNFLKQKFID 503
>sp|O83649|DPO3E_TREPA DNA polymerase III subunit epsilon OS=Treponema pallidum (strain
Nichols) GN=dnaQ PE=3 SV=1
Length = 215
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 10/164 (6%)
Query: 18 FDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITR 77
FD ETT + R ++E GA+ + ++ FSTLI P A+ S+ + IT
Sbjct: 18 FDTETTGLKAEEDR--IIEIGAVTFDRKGIIA--RFSTLIFPD--RAIPPDVSKINHITD 71
Query: 78 EAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLG 137
+ + + P F E+ + G V HN FD + + + K P+ ++D+
Sbjct: 72 DMLVNKPRFCEIVSDFSRFIKGTVLVAHN-ANFDVEFLNAELS-LCKKQPLSHKVVDTYA 129
Query: 138 VLTEKF-GRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
+ F G ++ LA FGL HR+ DD R+ +E+
Sbjct: 130 MAQAVFPGLGRHQYRLQNLALQFGLTVHAAHRAEDDARVCMELF 173
>sp|A5IJJ8|DPO3_THEP1 DNA polymerase III PolC-type OS=Thermotoga petrophila (strain RKU-1
/ ATCC BAA-488 / DSM 13995) GN=polC PE=3 SV=1
Length = 1367
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 19/173 (10%)
Query: 12 TAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
A V D ETT Q ++E GA+ + ++V+ + TLIKP ++ +SS
Sbjct: 355 NATFVVLDFETT--GLDPQVDEIIEIGAVKIQDGQIVD--EYHTLIKPS--REISRRSSE 408
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIR---RFDCARIKEAFA-EIGKPAP 127
GIT+E +E+ EEV + L + HN RF IK+ + +P
Sbjct: 409 ITGITQEMLENKRSIEEVLPEFLGFLENSIIVAHNANFDYRFLRLWIKKVMGLDWERP-- 466
Query: 128 VPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDDVRMNLEVL 179
ID+L + R+ + ++ GLG + HR+LDD R+ +V
Sbjct: 467 ----YIDTLALAKSLLKMRS--YSLDSVVEKLGLGPFRHHRALDDARVTAQVF 513
>sp|P54394|DING_BACSU Probable ATP-dependent helicase DinG homolog OS=Bacillus subtilis
(strain 168) GN=dinG PE=3 SV=1
Length = 931
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 10/115 (8%)
Query: 15 IVFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
V D+ETT P++ + +++ A+++ ++ E FS I P ++ +
Sbjct: 6 FVVIDVETTGNSPKKGDK---IIQIAAVVIENGQITE--RFSKYINPN--KSIPAFIEQL 58
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAP 127
GI+ + VE+ FE VA+++F +L+G + HNI FD +K + G P
Sbjct: 59 TGISNQMVENEQPFEAVAEEVFQLLDGAYFVAHNI-HFDLGFVKYELHKAGFQLP 112
>sp|Q9ZHF6|DPO3_THEMA DNA polymerase III PolC-type OS=Thermotoga maritima (strain ATCC
43589 / MSB8 / DSM 3109 / JCM 10099) GN=polC PE=1 SV=1
Length = 1367
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 19/174 (10%)
Query: 11 GTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS 70
G A V D ETT Q ++E GA+ + ++V+ + TLIKP ++ KSS
Sbjct: 354 GDATFVVLDFETT--GLDPQVDEIIEIGAVKIQGGQIVD--EYHTLIKPS--REISRKSS 407
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIR---RFDCARIKEAFA-EIGKPA 126
GIT+E +E+ EEV + L + HN RF IK+ + +P
Sbjct: 408 EITGITQEMLENKRSIEEVLPEFLGFLEDSIIVAHNANFDYRFLRLWIKKVMGLDWERP- 466
Query: 127 PVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQ-QKHRSLDDVRMNLEVL 179
ID+L + R+ + ++ GLG + HR+LDD R+ +V
Sbjct: 467 -----YIDTLALAKSLLKLRS--YSLDSVVEKLGLGPFRHHRALDDARVTAQVF 513
>sp|Q49X49|DPO3_STAS1 DNA polymerase III PolC-type OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=polC
PE=3 SV=1
Length = 1438
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 10/161 (6%)
Query: 12 TAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR 71
TA V FD+ETT + Q ++E A+ V ++++ F P + + +K+
Sbjct: 419 TATYVVFDVETT--GLSNQYDKIIELAAVKVKDGEIID--KFERFSNPHERLSETIKN-- 472
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
I+ + + APE EEV + S + ++ HN FD I + +G A G
Sbjct: 473 LTHISDDMLVDAPEIEEVLTEFKSWVGDAIFVAHN-ASFDMGFIDTGYEHVGIGASTN-G 530
Query: 132 MIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDD 171
+ID+L L+ G + LA +G+ Q HR++ D
Sbjct: 531 VIDTLE-LSRTINTEYGKHGLNFLAKKYGVELTQHHRAIYD 570
>sp|Q895K2|DPO3_CLOTE DNA polymerase III PolC-type OS=Clostridium tetani (strain
Massachusetts / E88) GN=polC PE=3 SV=1
Length = 1427
Score = 42.7 bits (99), Expect = 0.003, Method: Composition-based stats.
Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 11/165 (6%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V FD+ETT + ++E GA+ + K+V+ +ST + P+ + + K GI
Sbjct: 414 VVFDIETTGFSNKNDK--IIEIGAVKIKEGKVVD--KYSTFVNPERI--IPEKIIELTGI 467
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDS 135
V+ AP+ EEV K + + HN FD + IK+ + G P+ +D+
Sbjct: 468 HDYMVKDAPKIEEVLPKFIDFIEDSILVAHNA-NFDVSFIKKNCKDFGIHFNNPI--LDT 524
Query: 136 LGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVL 179
+ L + K+ +A + G+ HR+++D + ++L
Sbjct: 525 IP-LCKFLYPELKRYKLNVVAKHLGIPLLNHHRAVEDAKTTGDIL 568
>sp|Q4L5W6|DPO3_STAHJ DNA polymerase III PolC-type OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=polC PE=3 SV=1
Length = 1438
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 12/161 (7%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVE-LESFSTLIKPKDLSAVALKSSR 71
A V FD+ETT + Q ++E A+ V ++++ E FS + LS + +
Sbjct: 420 ATYVVFDVETT--GLSNQYDQIIELAAVKVKDGEIIDKFERFSN--PHEKLSETIINLTH 475
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVG 131
IT + + APE EEV + + ++ HN FD I + +G P G
Sbjct: 476 ---ITDDMLTDAPEIEEVLTEFKEWVGDAIFVAHN-ASFDMGFIDTGYERLGF-GPSTNG 530
Query: 132 MIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDD 171
+ID+L L+ G + LA +G+ Q HR++ D
Sbjct: 531 VIDTLE-LSRTINTEYGKHGLNFLAKKYGVELTQHHRAIYD 570
>sp|Q8CPG6|DPO3_STAES DNA polymerase III PolC-type OS=Staphylococcus epidermidis (strain
ATCC 12228) GN=polC PE=3 SV=1
Length = 1442
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 14/162 (8%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVE-LESFSTLIKPKD-LSAVALKSS 70
A V FD+ETT + Q ++E A+ V ++++ E FS P + LS + +
Sbjct: 424 ATYVVFDVETT--GLSNQYDKIIELAAVKVHNGEIIDKFERFSN---PHERLSETIINLT 478
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
IT + + APE EEV + + ++ HN FD I + +G P
Sbjct: 479 H---ITDDMLTDAPEIEEVLTEFKEWVGDAIFVAHN-ASFDMGFIDTGYERLGF-GPSTN 533
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDD 171
G+ID+L L+ G + LA +G+ Q HR++ D
Sbjct: 534 GVIDTLE-LSRTINTEYGKHGLNFLAKKYGVELTQHHRAIYD 574
>sp|Q5HPS7|DPO3_STAEQ DNA polymerase III PolC-type OS=Staphylococcus epidermidis (strain
ATCC 35984 / RP62A) GN=polC PE=3 SV=2
Length = 1438
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 14/162 (8%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVE-LESFSTLIKPKD-LSAVALKSS 70
A V FD+ETT + Q ++E A+ V ++++ E FS P + LS + +
Sbjct: 420 ATYVVFDVETT--GLSNQYDKIIELAAVKVHNGEIIDKFERFSN---PHERLSETIINLT 474
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
IT + + APE EEV + + ++ HN FD I + +G P
Sbjct: 475 H---ITDDMLTDAPEIEEVLTEFKEWVGDAIFVAHN-ASFDMGFIDTGYERLGF-GPSTN 529
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDD 171
G+ID+L L+ G + LA +G+ Q HR++ D
Sbjct: 530 GVIDTLE-LSRTINTEYGKHGLNFLAKKYGVELTQHHRAIYD 570
>sp|P0C1P9|DPO3_STAAU DNA polymerase III PolC-type OS=Staphylococcus aureus GN=polC PE=3
SV=1
Length = 1435
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 14/162 (8%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVE-LESFSTLIKPKD-LSAVALKSS 70
A V FD+ETT + Q ++E A+ V ++++ E FS P + LS + +
Sbjct: 418 ATYVVFDVETT--GLSNQYDKIIELAAVKVHNGEIIDKFERFSN---PHERLSETIINLT 472
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
IT + + APE EEV + + ++ HN FD I + +G P
Sbjct: 473 H---ITDDMLVDAPEIEEVLTEFKEWVGDAIFVAHN-ASFDMGFIDTGYERLGF-GPSTN 527
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDD 171
G+ID+L L+ G + LA +G+ Q HR++ D
Sbjct: 528 GVIDTLE-LSRTINTEYGKHGLNFLAKKYGVELTQHHRAIYD 568
>sp|Q2YXK4|DPO3_STAAB DNA polymerase III PolC-type OS=Staphylococcus aureus (strain
bovine RF122 / ET3-1) GN=polC PE=3 SV=1
Length = 1438
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 14/162 (8%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVE-LESFSTLIKPKD-LSAVALKSS 70
A V FD+ETT + Q ++E A+ V ++++ E FS P + LS + +
Sbjct: 420 ATYVVFDVETT--GLSNQYNKIIELAAVKVHNGEIIDKFERFSN---PHERLSETIINLT 474
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
IT + + APE EEV + + ++ HN FD I + +G P
Sbjct: 475 H---ITDDMLVDAPEIEEVLTEFKEWVGDAIFVAHN-ASFDMGFIDTGYERLGF-GPSTN 529
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDD 171
G+ID+L L+ G + LA +G+ Q HR++ D
Sbjct: 530 GVIDTLE-LSRTINTEYGKHGLNFLAKKYGVELTQHHRAIYD 570
>sp|Q6GHH1|DPO3_STAAR DNA polymerase III PolC-type OS=Staphylococcus aureus (strain
MRSA252) GN=polC PE=3 SV=1
Length = 1438
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 14/162 (8%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVE-LESFSTLIKPKD-LSAVALKSS 70
A V FD+ETT + Q ++E A+ V ++++ E FS P + LS + +
Sbjct: 420 ATYVVFDVETT--GLSNQYDKIIELAAVKVHNGEIIDKFERFSN---PHERLSETIINLT 474
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
IT + + APE EEV + + ++ HN FD I + +G P
Sbjct: 475 H---ITDDMLVDAPEIEEVLTEFKEWVGDAIFVAHN-ASFDMGFIDTGYERLGF-GPSTN 529
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDD 171
G+ID+L L+ G + LA +G+ Q HR++ D
Sbjct: 530 GVIDTLE-LSRTINTEYGKHGLNFLAKKYGVELTQHHRAIYD 570
>sp|P68852|DPO3_STAAW DNA polymerase III PolC-type OS=Staphylococcus aureus (strain MW2)
GN=polC PE=3 SV=1
Length = 1436
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 14/162 (8%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVE-LESFSTLIKPKD-LSAVALKSS 70
A V FD+ETT + Q ++E A+ V ++++ E FS P + LS + +
Sbjct: 418 ATYVVFDVETT--GLSNQYDKIIELAAVKVHNGEIIDKFERFSN---PHERLSETIINLT 472
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
IT + + APE EEV + + ++ HN FD I + +G P
Sbjct: 473 H---ITDDMLVDAPEIEEVLTEFKEWVGDAIFVAHN-ASFDMGFIDTGYERLGF-GPSTN 527
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDD 171
G+ID+L L+ G + LA +G+ Q HR++ D
Sbjct: 528 GVIDTLE-LSRTINTEYGKHGLNFLAKKYGVELTQHHRAIYD 568
>sp|Q6G9U9|DPO3_STAAS DNA polymerase III PolC-type OS=Staphylococcus aureus (strain
MSSA476) GN=polC PE=3 SV=1
Length = 1438
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 14/162 (8%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVE-LESFSTLIKPKD-LSAVALKSS 70
A V FD+ETT + Q ++E A+ V ++++ E FS P + LS + +
Sbjct: 420 ATYVVFDVETT--GLSNQYDKIIELAAVKVHNGEIIDKFERFSN---PHERLSETIINLT 474
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
IT + + APE EEV + + ++ HN FD I + +G P
Sbjct: 475 H---ITDDMLVDAPEIEEVLTEFKEWVGDAIFVAHN-ASFDMGFIDTGYERLGF-GPSTN 529
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDD 171
G+ID+L L+ G + LA +G+ Q HR++ D
Sbjct: 530 GVIDTLE-LSRTINTEYGKHGLNFLAKKYGVELTQHHRAIYD 570
>sp|A6QGG4|DPO3_STAAE DNA polymerase III PolC-type OS=Staphylococcus aureus (strain
Newman) GN=polC PE=3 SV=1
Length = 1438
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 14/162 (8%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVE-LESFSTLIKPKD-LSAVALKSS 70
A V FD+ETT + Q ++E A+ V ++++ E FS P + LS + +
Sbjct: 420 ATYVVFDVETT--GLSNQYDKIIELAAVKVHNGEIIDKFERFSN---PHERLSETIINLT 474
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
IT + + APE EEV + + ++ HN FD I + +G P
Sbjct: 475 H---ITDDMLVDAPEIEEVLTEFKEWVGDAIFVAHN-ASFDMGFIDTGYERLGF-GPSTN 529
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDD 171
G+ID+L L+ G + LA +G+ Q HR++ D
Sbjct: 530 GVIDTLE-LSRTINTEYGKHGLNFLAKKYGVELTQHHRAIYD 570
>sp|Q5HGG7|DPO3_STAAC DNA polymerase III PolC-type OS=Staphylococcus aureus (strain COL)
GN=polC PE=3 SV=2
Length = 1438
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 14/162 (8%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVE-LESFSTLIKPKD-LSAVALKSS 70
A V FD+ETT + Q ++E A+ V ++++ E FS P + LS + +
Sbjct: 420 ATYVVFDVETT--GLSNQYDKIIELAAVKVHNGEIIDKFERFSN---PHERLSETIINLT 474
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
IT + + APE EEV + + ++ HN FD I + +G P
Sbjct: 475 H---ITDDMLVDAPEIEEVLTEFKEWVGDAIFVAHN-ASFDMGFIDTGYERLGF-GPSTN 529
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDD 171
G+ID+L L+ G + LA +G+ Q HR++ D
Sbjct: 530 GVIDTLE-LSRTINTEYGKHGLNFLAKKYGVELTQHHRAIYD 570
>sp|Q2G1Z8|DPO3_STAA8 DNA polymerase III PolC-type OS=Staphylococcus aureus (strain NCTC
8325) GN=polC PE=3 SV=1
Length = 1436
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 14/162 (8%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVE-LESFSTLIKPKD-LSAVALKSS 70
A V FD+ETT + Q ++E A+ V ++++ E FS P + LS + +
Sbjct: 418 ATYVVFDVETT--GLSNQYDKIIELAAVKVHNGEIIDKFERFSN---PHERLSETIINLT 472
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
IT + + APE EEV + + ++ HN FD I + +G P
Sbjct: 473 H---ITDDMLVDAPEIEEVLTEFKEWVGDAIFVAHN-ASFDMGFIDTGYERLGF-GPSTN 527
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDD 171
G+ID+L L+ G + LA +G+ Q HR++ D
Sbjct: 528 GVIDTLE-LSRTINTEYGKHGLNFLAKKYGVELTQHHRAIYD 568
>sp|Q2FHH4|DPO3_STAA3 DNA polymerase III PolC-type OS=Staphylococcus aureus (strain
USA300) GN=polC PE=3 SV=1
Length = 1436
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 14/162 (8%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVE-LESFSTLIKPKD-LSAVALKSS 70
A V FD+ETT + Q ++E A+ V ++++ E FS P + LS + +
Sbjct: 418 ATYVVFDVETT--GLSNQYDKIIELAAVKVHNGEIIDKFERFSN---PHERLSETIINLT 472
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
IT + + APE EEV + + ++ HN FD I + +G P
Sbjct: 473 H---ITDDMLVDAPEIEEVLTEFKEWVGDAIFVAHN-ASFDMGFIDTGYERLGF-GPSTN 527
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDD 171
G+ID+L L+ G + LA +G+ Q HR++ D
Sbjct: 528 GVIDTLE-LSRTINTEYGKHGLNFLAKKYGVELTQHHRAIYD 568
>sp|P63982|DPO3_STAAN DNA polymerase III PolC-type OS=Staphylococcus aureus (strain N315)
GN=polC PE=1 SV=1
Length = 1438
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 14/162 (8%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVE-LESFSTLIKPKD-LSAVALKSS 70
A V FD+ETT + Q ++E A+ V ++++ E FS P + LS + +
Sbjct: 420 ATYVVFDVETT--GLSNQYDKIIELAAVKVHNGEIIDKFERFSN---PHERLSETIINLT 474
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
IT + + APE EEV + + ++ HN FD I + +G P
Sbjct: 475 H---ITDDMLVDAPEIEEVLTEFKEWVGDAIFVAHN-ASFDMGFIDTGYERLGF-GPSTN 529
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDD 171
G+ID+L L+ G + LA +G+ Q HR++ D
Sbjct: 530 GVIDTLE-LSRTINTEYGKHGLNFLAKKYGVELTQHHRAIYD 570
>sp|P63981|DPO3_STAAM DNA polymerase III PolC-type OS=Staphylococcus aureus (strain Mu50
/ ATCC 700699) GN=polC PE=3 SV=1
Length = 1438
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 14/162 (8%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVE-LESFSTLIKPKD-LSAVALKSS 70
A V FD+ETT + Q ++E A+ V ++++ E FS P + LS + +
Sbjct: 420 ATYVVFDVETT--GLSNQYDKIIELAAVKVHNGEIIDKFERFSN---PHERLSETIINLT 474
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
IT + + APE EEV + + ++ HN FD I + +G P
Sbjct: 475 H---ITDDMLVDAPEIEEVLTEFKEWVGDAIFVAHN-ASFDMGFIDTGYERLGF-GPSTN 529
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDD 171
G+ID+L L+ G + LA +G+ Q HR++ D
Sbjct: 530 GVIDTLE-LSRTINTEYGKHGLNFLAKKYGVELTQHHRAIYD 570
>sp|A7X1P4|DPO3_STAA1 DNA polymerase III PolC-type OS=Staphylococcus aureus (strain Mu3 /
ATCC 700698) GN=polC PE=3 SV=1
Length = 1438
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 14/162 (8%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVE-LESFSTLIKPKD-LSAVALKSS 70
A V FD+ETT + Q ++E A+ V ++++ E FS P + LS + +
Sbjct: 420 ATYVVFDVETT--GLSNQYDKIIELAAVKVHNGEIIDKFERFSN---PHERLSETIINLT 474
Query: 71 RCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV 130
IT + + APE EEV + + ++ HN FD I + +G P
Sbjct: 475 H---ITDDMLVDAPEIEEVLTEFKEWVGDAIFVAHN-ASFDMGFIDTGYERLGF-GPSTN 529
Query: 131 GMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDD 171
G+ID+L L+ G + LA +G+ Q HR++ D
Sbjct: 530 GVIDTLE-LSRTINTEYGKHGLNFLAKKYGVELTQHHRAIYD 570
>sp|P03007|DPO3E_ECOLI DNA polymerase III subunit epsilon OS=Escherichia coli (strain K12)
GN=dnaQ PE=1 SV=1
Length = 243
Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 11/138 (7%)
Query: 16 VFFDLETTVPRRAGQRFW---VLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
+ D ETT + G + ++E GA+ V R+L +F +KP L V ++
Sbjct: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTG-NNFHVYLKPDRL--VDPEAFGV 65
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVP--- 129
GI E + P F EVAD+ + G HN FD + F+ + + P
Sbjct: 66 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNA-AFDIGFMDYEFSLLKRDIPKTNTF 124
Query: 130 VGMIDSLGVLTEKF-GRR 146
+ DSL V + F G+R
Sbjct: 125 CKVTDSLAVARKMFPGKR 142
>sp|O68045|DPO3E_RHOCB DNA polymerase III subunit epsilon-like protein OS=Rhodobacter
capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
GN=dnaQ PE=3 SV=1
Length = 704
Score = 39.3 bits (90), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 80/206 (38%), Gaps = 23/206 (11%)
Query: 16 VFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCD 73
V FD ETT P + +++ A+ + + V E F TL+ P + S+
Sbjct: 511 VVFDTETTGLFPTGGDE---IVQIAAVRIVNGRRVAGEVFDTLVNPG--RPIPAASTAVH 565
Query: 74 GITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMI 133
GIT V +AP EV + G V HN FD ++ IGK PV +
Sbjct: 566 GITEAMVATAPAIAEVGRRFHKFAEGAVLVAHNA-PFDLEFLRRKELLIGKNFDNPV--L 622
Query: 134 DSLGVLTEKFGRRAGNMKMATLASYFGLG---QQKHRSLDDVRMNLEVLKHCATVLFLES 190
D++ + FG G+ + L G+ + +H +L D AT
Sbjct: 623 DTVLLSAVVFGAAEGH-SLDALTHRLGITIPEEARHTALGDT---------VATAEAFLR 672
Query: 191 SLPNTFNSNLQSSLTVTTRSRSNGKL 216
LP L + V T R +G+L
Sbjct: 673 LLPALKARGLTTFGAVLTEVRKHGRL 698
>sp|Q9CPE0|DPO3E_PASMU DNA polymerase III subunit epsilon OS=Pasteurella multocida (strain
Pm70) GN=dnaQ PE=3 SV=1
Length = 253
Score = 38.1 bits (87), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 16 VFFDLETTVPRRAGQRF---WVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
+ D ETT + G + ++E GA+ + R+L +F IKP V + +
Sbjct: 11 IVLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRLTG-NNFHIYIKPN--RPVDPDAIKV 67
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
GIT E + P F EVA + + G HN FD + F ++
Sbjct: 68 HGITDEMLADKPMFNEVAQQFIDYIQGAELLIHN-APFDVGFMDYEFKKLN 117
>sp|Q8CP71|DING_STAES Probable ATP-dependent helicase DinG homolog OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=dinG PE=3 SV=1
Length = 902
Score = 37.7 bits (86), Expect = 0.095, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 13/112 (11%)
Query: 11 GTAEIVFFDLETTVPRRAGQRF---WVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVAL 67
G A DLETT G + +++ G V R+ ++++ ++I+ DL
Sbjct: 2 GIATFAVVDLETT-----GNQLDYDEIIQIGITFV--RQNQVIDTYHSMIR-TDLEIPPF 53
Query: 68 KSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAF 119
+ I E + AP F EVAD I+ ++ V+ HNI FD IK+AF
Sbjct: 54 IQA-LTSIEEEMLVQAPYFNEVADDIYQLIKDCVFVAHNI-SFDLNFIKKAF 103
>sp|Q5HP88|DING_STAEQ Probable ATP-dependent helicase DinG homolog OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=dinG PE=3
SV=1
Length = 902
Score = 37.7 bits (86), Expect = 0.095, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 13/112 (11%)
Query: 11 GTAEIVFFDLETTVPRRAGQRF---WVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVAL 67
G A DLETT G + +++ G V R+ ++++ ++I+ DL
Sbjct: 2 GIATFAVVDLETT-----GNQLDYDEIIQIGITFV--RQNQVIDTYHSMIR-TDLEIPPF 53
Query: 68 KSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAF 119
+ I E + AP F EVAD I+ ++ V+ HNI FD IK+AF
Sbjct: 54 IQA-LTSIEEEMLVQAPYFNEVADDIYQLIKDCVFVAHNI-SFDLNFIKKAF 103
>sp|P43745|DPO3E_HAEIN DNA polymerase III subunit epsilon OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dnaQ PE=3
SV=1
Length = 256
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Query: 16 VFFDLETTVPRRAGQRF---WVLEFGAIIVCPRKLVELESFSTLIKPK---DLSAVALKS 69
+ D ETT + G + ++E GA+ + R+ + IKP D A+
Sbjct: 8 IVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTG-NNXHIYIKPDRPXDPDAI---- 62
Query: 70 SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHN 106
+ GIT E + PEF+EVA +NG HN
Sbjct: 63 -KVHGITDEMLADKPEFKEVAQDFLDYINGAELLIHN 98
>sp|Q4L6F9|DING_STAHJ Probable ATP-dependent helicase DinG homolog OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=dinG PE=3 SV=1
Length = 900
Score = 37.4 bits (85), Expect = 0.13, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 80 VESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAF 119
+E AP F E+A +I+ L RV+ HN+ FD IK+AF
Sbjct: 65 LEQAPYFHEIAQEIYKQLKDRVFVAHNV-DFDLNFIKKAF 103
>sp|P57337|DPO3E_BUCAI DNA polymerase III subunit epsilon OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=dnaQ PE=3 SV=1
Length = 237
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 34 VLEFGAIIVCPRKLVELESFSTLIKP-KDLSAVALKSSRCDGITREAVESAPEFEEVADK 92
++E GA+ + R +F I+P + + + ALK GIT + + P F+++AD
Sbjct: 28 IIEIGAVEIIDRCFTG-NNFHVYIQPGRSIESGALK---VHGITNKFLLDKPIFKDIADS 83
Query: 93 IFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPV--GMIDSLGVLTEKF 143
+ + + HN FD I + + K + +ID+L + E F
Sbjct: 84 FLNYIKNSILVIHN-ASFDVGFINQELEILNKKIKINTFCSIIDTLKIARELF 135
>sp|Q9KA72|DPO3_BACHD DNA polymerase III PolC-type OS=Bacillus halodurans (strain ATCC
BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=polC PE=3 SV=1
Length = 1433
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 22/166 (13%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVE-LESFSTLIKPKDLSAVALKSSR 71
+E V FD+ETT + ++E A+ V ++++ E F+ +P + + L
Sbjct: 417 SEFVVFDVETTGLSAVYNK--IIELAAVKVKNGEIIDRFERFADPHEPLTNTIIELT--- 471
Query: 72 CDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG-KPAPVPV 130
GIT + ++ PE E+V ++ + + V HN FD + F ++G A PV
Sbjct: 472 --GITDDMLKGQPEVEQVLNEFHAFIGDAVLVAHN-ASFDMGFLNTGFQKMGLGEAKNPV 528
Query: 131 GMIDSLGVLTEKFGR----RAGNMKMATLASYFGLG-QQKHRSLDD 171
ID+L + GR N ++ TL F + HR++ D
Sbjct: 529 --IDTL-----ELGRFLYPTLKNHRLNTLCKKFDIELVSHHRAIYD 567
>sp|Q08880|DPO3E_BUCAP DNA polymerase III subunit epsilon OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=dnaQ PE=3 SV=2
Length = 233
Score = 35.8 bits (81), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 51 ESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRF 110
+ F T IKP L + +S+ GIT + + P F+++A F+ + HN F
Sbjct: 45 KKFHTYIKPNRL--IESDASKIHGITDDFLSDKPSFKDIAKDFFNYIKNSELIIHN-ASF 101
Query: 111 DCARIKEAFAEIGK 124
D I + F+ + K
Sbjct: 102 DVGFINQEFSMLTK 115
>sp|P0A1G9|DPO3E_SALTY DNA polymerase III subunit epsilon OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=dnaQ PE=3 SV=1
Length = 243
Score = 35.4 bits (80), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 7/115 (6%)
Query: 16 VFFDLETTVPRRAGQRFW---VLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
+ D ETT + G + ++E GA+ V R+L +F +KP L V ++
Sbjct: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTG-NNFHVYLKPDRL--VDPEAFGV 65
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAP 127
GI E + P F +V D+ + G HN FD + F + + P
Sbjct: 66 HGIADEFLLDKPVFADVVDEFLDYIRGAELVIHNA-SFDIGFMDYEFGLLKRDIP 119
>sp|P0A1H0|DPO3E_SALTI DNA polymerase III subunit epsilon OS=Salmonella typhi GN=dnaQ PE=3
SV=1
Length = 243
Score = 35.4 bits (80), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 7/115 (6%)
Query: 16 VFFDLETTVPRRAGQRFW---VLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
+ D ETT + G + ++E GA+ V R+L +F +KP L V ++
Sbjct: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTG-NNFHVYLKPDRL--VDPEAFGV 65
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAP 127
GI E + P F +V D+ + G HN FD + F + + P
Sbjct: 66 HGIADEFLLDKPVFADVVDEFLDYIRGAELVIHNA-SFDIGFMDYEFGLLKRDIP 119
>sp|Q819Y5|DPO3_BACCR DNA polymerase III PolC-type OS=Bacillus cereus (strain ATCC 14579
/ DSM 31) GN=polC PE=3 SV=1
Length = 1435
Score = 35.4 bits (80), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVE-LESFSTLIKPKDLSAVALKSSRCDG 74
V FD+ETT + V+E A+ V ++++ ESF+ +P LSA ++ + G
Sbjct: 421 VVFDVETT--GLSAVYDTVIELAAVKVKGGEIIDRFESFANPHQP--LSATIIELT---G 473
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG 123
IT + + APE +EV K + HN FD I F + G
Sbjct: 474 ITDDMLTDAPEVDEVFKKFEEWMGDHTLVAHN-ASFDMGFINVGFKKAG 521
>sp|Q4IEV5|REXO4_GIBZE RNA exonuclease 4 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 /
FGSC 9075 / NRRL 31084) GN=REX4 PE=3 SV=1
Length = 319
Score = 35.4 bits (80), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 53 FSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR 109
+ + +KPK+ V + GI+++++ A +FEEV +I +L GR+ GH+++
Sbjct: 166 YDSYVKPKE--KVTNWRTAVSGISQKSMRFARDFEEVQAEIDKLLRGRILVGHDLKH 220
>sp|P75080|DPO3_MYCPN DNA polymerase III PolC-type OS=Mycoplasma pneumoniae (strain ATCC
29342 / M129) GN=polC PE=1 SV=1
Length = 1443
Score = 35.4 bits (80), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 7/126 (5%)
Query: 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRC 72
A V FD+ETT G+ V+EF I V + VE F I +AV +
Sbjct: 406 ATFVIFDIETT--GLHGRYDSVIEFAGIKVKHNREVERMQFFLKIDGPLPAAV----TEI 459
Query: 73 DGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGM 132
IT+ +E E + +K+ + L+G V HN FD ++ F E AP+ +
Sbjct: 460 TKITQAQLEDGMEQQAGLEKLRAWLDGCVMVAHNGLSFDLPFLQTQF-EKYNIAPLTNPL 518
Query: 133 IDSLGV 138
ID+L +
Sbjct: 519 IDTLAL 524
>sp|Q8EQU6|DPO3_OCEIH DNA polymerase III PolC-type OS=Oceanobacillus iheyensis (strain
DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=polC PE=3
SV=1
Length = 1428
Score = 35.0 bits (79), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 91/242 (37%), Gaps = 39/242 (16%)
Query: 16 VFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGI 75
V FD+ETT + ++E A+ + ++V+ F + P A++ + GI
Sbjct: 415 VVFDVETT--GLSAVYDTIIELAAVKIKGGEIVD--RFESFANPH--HALSQTTIDLTGI 468
Query: 76 TREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIG-KPAPVPVGMID 134
T + V APE +V + + + HN FD + + F I + A PV +D
Sbjct: 469 TDDMVNDAPEVADVLKDFHTWMGNDILVAHN-ASFDMGFLNQGFQRIDYEKASNPV--VD 525
Query: 135 SLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHCATVLFLESSLP 193
+L L N ++ TL + + Q HR++ D AT L +
Sbjct: 526 TLE-LARFLLPELRNHRLNTLCKHLDIELTQHHRAIYDAE---------ATGYLLWKLVQ 575
Query: 194 NTFNSNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQRSAVPYTRTSLGKMTESVK 253
+ + L + N YQRS PY T + + E +K
Sbjct: 576 RLVEKEISNHLELNNHMGENN-----------------AYQRSR-PYHCTLIAQTEEGLK 617
Query: 254 NL 255
NL
Sbjct: 618 NL 619
>sp|Q49XR1|DING_STAS1 Probable ATP-dependent helicase DinG homolog OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=dinG PE=3 SV=1
Length = 900
Score = 34.3 bits (77), Expect = 0.92, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAE 121
I + + AP F E+A+ I+ ++G ++ HN+ FD IK++F +
Sbjct: 60 IEEDMLNQAPYFHEIAEDIYKQIDGCIFVAHNV-AFDLNFIKKSFKQ 105
>sp|P07582|LYS_BPPH6 Phage lysis protein OS=Pseudomonas phage phi6 GN=P5 PE=1 SV=2
Length = 220
Score = 34.3 bits (77), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
Query: 71 RCDGI----TREAVESAPEFEEVAD-KIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKP 125
R DG+ TR A+++ PE ++ A ++ ++L G+N RF A + A A I +
Sbjct: 21 RADGVVGSETRAALDALPENQKKAIVELQALLPKAQSVGNNRVRFTTAEVDSAVARISQK 80
Query: 126 APVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVR 173
VP L + E F AG + S+ GLGQ ++ D +R
Sbjct: 81 IGVPASYYQFL-IPIENF-VVAGGFETTVSGSFRGLGQFNRQTWDRLR 126
>sp|Q9X1P3|Y1557_THEMA UPF0758 protein TM_1557 OS=Thermotoga maritima (strain ATCC 43589 /
MSB8 / DSM 3109 / JCM 10099) GN=TM_1557 PE=3 SV=1
Length = 222
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 28/117 (23%)
Query: 107 IRRFDCARIKEAFAEIGKPAPVP-VGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQK 165
+ RFD + IK + A + + A V VGM+ K TL + LG++
Sbjct: 49 LERFDGSLIKLSNASLEEIASVEGVGMV-----------------KAITLKAALELGKRL 91
Query: 166 HRSLDDVRMNLE----VLKHCATVLFLESS------LPNTFNSNLQSSLTVTTRSRS 212
HR L+ + L+ V K+C +++LE L N +++LTV T RS
Sbjct: 92 HRELERIPEKLDSSVKVYKYCQEMVYLEREIVKVICLDTKLNVIGENTLTVGTSDRS 148
>sp|Q6GGV4|DING_STAAR Probable ATP-dependent helicase DinG homolog OS=Staphylococcus
aureus (strain MRSA252) GN=dinG PE=3 SV=1
Length = 897
Score = 33.1 bits (74), Expect = 2.3, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 75 ITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID 134
I ++ AP F +VA++I+ + ++ HN+ FD IK+AF + P +ID
Sbjct: 60 IEENMLQQAPYFNQVAEEIYDKIKDCIFVAHNV-DFDLNFIKKAFKDCNIQYR-PKKVID 117
Query: 135 SLGVLTEKFGRRAGNMKMATLASYFGLG-QQKHRSLDD 171
+L + F + +++ LA G+ HR+ +D
Sbjct: 118 TLEIFKIAFPTDK-SYQLSELAEAHGITLANAHRADED 154
>sp|O67588|CLPB_AQUAE Chaperone protein ClpB OS=Aquifex aeolicus (strain VF5) GN=clpB
PE=3 SV=1
Length = 1006
Score = 33.1 bits (74), Expect = 2.3, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 45 RKLVELE-SFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVAD 91
R+L ++E S ST+ P+D+ A DG+ R+A+E +P E+V +
Sbjct: 153 RQLEQVEKSLSTVFAPEDVKAFLENKLSIDGLIRKALEKSPLIEQVKE 200
>sp|Q9PQB4|DPO3_UREPA DNA polymerase III PolC-type OS=Ureaplasma parvum serovar 3 (strain
ATCC 700970) GN=polC PE=3 SV=1
Length = 1442
Score = 32.7 bits (73), Expect = 2.8, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 10/134 (7%)
Query: 5 IPSQAAGTAEIVFFDLETT--VPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDL 62
+ Q A V FD+ETT P ++EFGA+I+ K + E IKP +
Sbjct: 399 VRDQNLDNATYVIFDIETTGLFPNFDE----IIEFGAVIMQNNKQIG-EKIQFFIKP--I 451
Query: 63 SAVALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEI 122
+ + I++E V +A + + KI I + + HN FD I + +
Sbjct: 452 QQINENVTNLTNISQEMVNNAIDEKTALLKIKEIFDDHILVAHNGINFDINFINQRLLKW 511
Query: 123 GKPAPVPVGMIDSL 136
G P+ ID+L
Sbjct: 512 GL-EPLKNPSIDTL 524
>sp|Q38W73|DPO3_LACSS DNA polymerase III PolC-type OS=Lactobacillus sakei subsp. sakei
(strain 23K) GN=polC PE=3 SV=1
Length = 1446
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 67/162 (41%), Gaps = 11/162 (6%)
Query: 7 SQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKP-KDLSAV 65
Q +AE V FD+ETT ++E A+ + ++V SF I P + LSA
Sbjct: 417 DQVLESAEYVIFDVETTGLSAVYDS--IIELAAVKMRDGEVV--ASFDEFIDPERPLSAF 472
Query: 66 ALKSSRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKP 125
+++ IT E V A + EV V AGHN+ FD + + E
Sbjct: 473 ---TTQLTSITNEMVHGAKKEAEVLAMFKEFTGDAVLAGHNV-SFDMGFLNAGY-ERNDI 527
Query: 126 APVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHR 167
+ +ID+L L+ N K+ +L + + + H
Sbjct: 528 DLIDNPVIDTLE-LSRMLHPEYKNHKLDSLTKRYKINLEHHH 568
>sp|Q9CZI9|AEN_MOUSE Apoptosis-enhancing nuclease OS=Mus musculus GN=Aen PE=2 SV=1
Length = 336
Score = 32.0 bits (71), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
Query: 70 SRCDGITREAVESAPEFEEVADKIFSILNGRVWAGHNIRR-FDCARIKEAFAEIGKPAPV 128
+R GITR+ + A F+ +I +L G+V GH + F + ++ V
Sbjct: 157 TRWSGITRQHMHKAIPFQVAQKEILKLLKGKVVVGHALHNDFQALKYVHPRSQTRDTTYV 216
Query: 129 PVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLK 180
P + ++ + + ++ + L +G Q H S++D +E+ +
Sbjct: 217 PNLLSQPSSLIRTRVSLK--DLALNLLHKKIQVGHQGHSSVEDAMTAMELYQ 266
>sp|Q5BFB1|PAN3_EMENI PAB-dependent poly(A)-specific ribonuclease subunit pan3
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pan3 PE=3 SV=3
Length = 661
Score = 31.6 bits (70), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 29/63 (46%)
Query: 192 LPNTFNSNLQSSLTVTTRSRSNGKLPCREETSRKSPPISLGYQRSAVPYTRTSLGKMTES 251
LPN F LQ T ++ N +LP + + P+ L +Q++A + S +S
Sbjct: 246 LPNDFREELQKKAAATLQTLPNTQLPAQVDYFHSLVPLDLNHQKNAAIFGYPSWVYKAQS 305
Query: 252 VKN 254
K+
Sbjct: 306 TKD 308
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,464,680
Number of Sequences: 539616
Number of extensions: 3555356
Number of successful extensions: 8687
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 8668
Number of HSP's gapped (non-prelim): 62
length of query: 277
length of database: 191,569,459
effective HSP length: 116
effective length of query: 161
effective length of database: 128,974,003
effective search space: 20764814483
effective search space used: 20764814483
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)