Query 023805
Match_columns 277
No_of_seqs 223 out of 1390
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 13:05:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023805.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023805hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1j_A POLIII, DNA polymerase 100.0 8.2E-33 2.8E-37 232.7 19.3 175 5-189 4-179 (186)
2 3mxm_B Three prime repair exon 100.0 1.5E-32 5.1E-37 240.4 14.0 182 3-189 2-218 (242)
3 1w0h_A 3'-5' exonuclease ERI1; 100.0 1.9E-31 6.6E-36 226.9 17.8 176 11-187 8-196 (204)
4 3u3y_B Three prime repair exon 100.0 1.7E-31 5.6E-36 240.5 15.5 182 3-189 2-218 (314)
5 1y97_A Three prime repair exon 100.0 7.5E-31 2.6E-35 228.6 18.5 178 7-188 4-212 (238)
6 2gui_A DNA polymerase III epsi 100.0 2.4E-30 8.1E-35 218.7 20.3 168 12-185 8-184 (194)
7 1zbh_A 3'-5' exonuclease ERI1; 100.0 3.3E-30 1.1E-34 232.1 19.9 175 11-186 76-263 (299)
8 2f96_A Ribonuclease T; RNAse, 100.0 1.2E-29 4E-34 219.3 17.6 172 10-188 26-215 (224)
9 2xri_A ERI1 exoribonuclease 3; 100.0 1.3E-29 4.3E-34 219.3 17.5 174 13-187 31-215 (224)
10 1zbu_A ERI-1 homolog, 3'-5' ex 100.0 8.3E-30 2.9E-34 233.6 16.5 174 12-186 127-313 (349)
11 3v9w_A Ribonuclease T; DEDD nu 100.0 1.3E-28 4.5E-33 214.1 19.6 172 10-188 34-223 (235)
12 3cg7_A CRN-4, cell death-relat 100.0 7.3E-29 2.5E-33 224.1 14.9 174 11-186 17-209 (308)
13 2igi_A Oligoribonuclease; RNAs 100.0 5.5E-28 1.9E-32 201.8 12.8 162 11-188 3-179 (180)
14 1wlj_A Interferon stimulated g 99.9 4.5E-28 1.5E-32 204.2 9.5 160 12-188 4-171 (189)
15 2gbz_A Oligoribonuclease; ORN, 99.9 3.1E-27 1E-31 200.0 12.7 161 11-188 7-183 (194)
16 3tr8_A Oligoribonuclease; tran 99.9 6.9E-27 2.4E-31 196.4 13.7 164 9-188 5-183 (186)
17 2qxf_A Exodeoxyribonuclease I; 99.9 2.4E-26 8.3E-31 218.3 17.4 169 11-185 7-200 (482)
18 2kfn_A Klenow fragment of DNA 99.2 1.8E-10 6E-15 112.6 16.2 144 13-188 26-195 (605)
19 4hec_A Putative uncharacterize 99.0 1.3E-09 4.6E-14 90.8 10.5 157 8-185 17-181 (190)
20 1x9m_A DNA polymerase; DNA plo 98.9 2.3E-09 7.7E-14 106.4 9.4 141 15-190 1-187 (698)
21 4gmj_B CCR4-NOT transcription 98.7 7.7E-07 2.6E-11 78.7 18.1 175 12-193 33-251 (285)
22 4dfk_A DNA polymerase I, therm 98.5 2.2E-07 7.5E-12 89.4 9.2 118 14-186 11-128 (540)
23 1qht_A Protein (DNA polymerase 98.4 7.1E-06 2.4E-10 82.2 16.0 146 12-183 134-327 (775)
24 2p51_A SPCC18.06C protein; DED 98.3 3.9E-05 1.3E-09 68.8 16.4 172 10-189 42-259 (333)
25 1noy_A Protein (DNA polymerase 98.2 2.2E-05 7.6E-10 72.5 15.2 166 12-182 105-335 (388)
26 2d5r_A CCR4-NOT transcription 98.2 4.4E-05 1.5E-09 66.3 15.6 171 12-188 23-237 (252)
27 3pv8_A DNA polymerase I; DNA p 98.2 4.4E-06 1.5E-10 81.2 10.2 131 14-188 30-183 (592)
28 3iay_A DNA polymerase delta ca 98.1 3.6E-05 1.2E-09 78.3 15.4 157 12-182 248-465 (919)
29 1s5j_A DNA polymerase I; repli 98.1 2.4E-05 8.1E-10 79.1 12.8 156 12-179 189-386 (847)
30 1uoc_A POP2; hydrolase, DEDD n 98.0 0.00016 5.6E-09 63.8 15.7 173 10-187 35-266 (289)
31 3saf_A Exosome component 10; e 98.0 6.4E-05 2.2E-09 70.2 13.1 134 13-191 129-282 (428)
32 1yt3_A Ribonuclease D, RNAse D 97.8 0.00027 9.1E-09 64.8 13.7 90 91-189 64-173 (375)
33 2gv9_A DNA polymerase; polymer 97.6 0.0005 1.7E-08 71.7 13.7 165 13-182 320-550 (1193)
34 2hbj_A Exosome complex exonucl 97.6 0.00087 3E-08 62.2 14.1 91 91-191 149-259 (410)
35 3qex_A DNA polymerase, GP43; d 97.6 0.0014 4.6E-08 66.4 16.4 163 12-181 107-337 (903)
36 2e6m_A Werner syndrome ATP-dep 97.6 0.00022 7.7E-09 59.7 9.1 89 91-188 86-197 (208)
37 3k59_A POL II, DNA polymerase 97.6 0.00096 3.3E-08 66.8 15.1 97 85-182 203-349 (786)
38 3cym_A Uncharacterized protein 97.4 0.0019 6.4E-08 60.5 12.8 90 90-190 84-191 (440)
39 1vk0_A Hypothetical protein; h 97.1 0.0094 3.2E-07 50.0 13.2 87 91-184 98-205 (206)
40 2a1r_A Poly(A)-specific ribonu 96.8 0.01 3.4E-07 55.4 11.5 85 98-187 280-398 (430)
41 3d45_A Poly(A)-specific ribonu 96.6 0.005 1.7E-07 58.6 8.0 85 98-187 275-393 (507)
42 2py5_A DNA polymerase; protein 96.2 0.022 7.5E-07 55.0 10.2 125 12-185 5-183 (575)
43 1bgx_T TAQ DNA polymerase; DNA 96.0 0.019 6.5E-07 57.8 8.9 82 91-187 340-421 (832)
44 3q7c_A Nucleoprotein; deddh ex 89.8 0.52 1.8E-05 39.1 5.5 107 9-136 53-159 (243)
45 3mwp_A Nucleoprotein; structur 61.7 8.7 0.0003 35.4 4.7 107 9-136 387-493 (577)
46 3ikm_A DNA polymerase subunit 53.0 1 3.6E-05 46.0 -3.1 37 98-139 193-229 (1172)
47 2a1r_A Poly(A)-specific ribonu 40.1 46 0.0016 30.5 6.0 49 12-60 21-95 (430)
48 2gqb_A Conserved hypothetical 38.5 1.1E+02 0.0039 23.0 6.8 68 114-188 52-119 (130)
49 3d45_A Poly(A)-specific ribonu 36.2 52 0.0018 30.8 5.8 49 12-60 23-97 (507)
No 1
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=100.00 E-value=8.2e-33 Score=232.66 Aligned_cols=175 Identities=26% Similarity=0.382 Sum_probs=148.3
Q ss_pred CCCCCCCCCcEEEEEeccCCCCCCCCCCceEEEEEEEEECCeeeeeceEEEeecCCCCCCCCchhhhhcCCCHHHHhCCC
Q 023805 5 IPSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAP 84 (277)
Q Consensus 5 ~~~~~~~~~~~v~~D~ETTg~~~~~~~~~IieIg~v~v~~~~~~~~~sf~~~v~P~~~~~i~~~~~~~~GIt~e~l~~a~ 84 (277)
+...+....++++||+||||+++ ..++|||||++.++++.+ ++.|+.+|+|.. .++++++++||||++++++++
T Consensus 4 ~~~~~l~~~~~v~iD~ETTGl~~--~~~~IieIg~v~~~~g~i--~~~f~~lv~P~~--~i~~~~~~i~GIt~~~l~~~~ 77 (186)
T 2p1j_A 4 SDDSTFGDATFVVLDFETTGLDP--QVDEIIEIGAVKIQGGQI--VDEYHTLIKPSR--EISRKSSEITGITQEMLENKR 77 (186)
T ss_dssp ---------CEEEEEEEESCSCT--TTCCEEEEEEEEEETTEE--EEEEEEECBCSS--CCCHHHHHHHCCCHHHHTTCC
T ss_pred CcCCcCcCCCEEEEEEECCCCCC--CCCeEEEEEEEEEECCEE--EEEEEEEECcCC--CCCHHHhhhcCCCHHHHhcCC
Confidence 34455667899999999999987 567999999999987654 478999999998 799999999999999999999
Q ss_pred CHHHHHHHHHHHhCCCEEEEeCCchhHHHHHHHHHHHhCCCCCCCCceeehHHHHHHHhCCCCCCCCHHHHHHHhCCC-C
Q 023805 85 EFEEVADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-Q 163 (277)
Q Consensus 85 ~f~ev~~~l~~~l~~~~lv~hn~~~fD~~~L~~~~~~~g~~~p~~~~~iDt~~l~~~~~~~~~~~~~L~~La~~~gi~-~ 163 (277)
+|.+++.+|.+|+++.++||||+ .||+.+|+.++.++|++.+. ..++|++.++...+ ..++++|+.|+++||++ .
T Consensus 78 ~~~~v~~~~~~~l~~~~lv~hn~-~fD~~~L~~~~~~~g~~~~~-~~~iDt~~l~~~~~--~~~~~~L~~l~~~~gi~~~ 153 (186)
T 2p1j_A 78 SIEEVLPEFLGFLEDSIIVAHNA-NFDYRFLRLWIKKVMGLDWE-RPYIDTLALAKSLL--KLRSYSLDSVVEKLGLGPF 153 (186)
T ss_dssp BHHHHHHHHHHHSSSCEEEETTH-HHHHHHHHHHHHHHHCCCCC-CCEEEHHHHHHHHT--CCSCCSHHHHHHHTTCCST
T ss_pred CHHHHHHHHHHHHCCCEEEEECc-HHHHHHHHHHHHHcCCCCCC-CCEEeHHHHHHHHh--hcCCCCHHHHHHHcCCCCC
Confidence 99999999999999999999999 99999999999999998643 35999998876655 55689999999999998 6
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhhcc
Q 023805 164 QKHRSLDDVRMNLEVLKHCATVLFLE 189 (277)
Q Consensus 164 ~~H~Al~DA~~t~~l~~~l~~~l~~~ 189 (277)
.+|+|++||+++++|+.++++...++
T Consensus 154 ~~H~Al~Da~~t~~l~~~l~~~~~~~ 179 (186)
T 2p1j_A 154 RHHRALDDARVTAQVFLRFVEMMKKE 179 (186)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 78999999999999999998766554
No 2
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=99.98 E-value=1.5e-32 Score=240.38 Aligned_cols=182 Identities=20% Similarity=0.258 Sum_probs=153.6
Q ss_pred CCCCCCCCCCCcEEEEEeccCCCCCCCCCCceEEEEEEEEECCee-----------------eeeceEEEeecCCCCCCC
Q 023805 3 GFIPSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKL-----------------VELESFSTLIKPKDLSAV 65 (277)
Q Consensus 3 ~~~~~~~~~~~~~v~~D~ETTg~~~~~~~~~IieIg~v~v~~~~~-----------------~~~~sf~~~v~P~~~~~i 65 (277)
|+.+.+...-++||+||+||||+++ ..++|||||+|.++++.+ .+++.|+++|+|.. .+
T Consensus 2 ~~~~~~~~~~~~~vv~D~ETTGl~~--~~d~IiEIgav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~li~P~~--~i 77 (242)
T 3mxm_B 2 GSQTLPHGHMQTLIFLDLEATGLPS--SRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGK--AC 77 (242)
T ss_dssp ----CTTCCCSEEEEEEEEESSCGG--GCCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEEECCCSS--CC
T ss_pred CcccCCccccceEEEEEeecCCCCC--CCCeeEEEEEEEecCCcccccccccccccccccccchhheeEEEECCCC--CC
Confidence 4556667778899999999999997 678999999999987631 23578999999998 89
Q ss_pred CchhhhhcCCCHHHHhCC--CCHH-HHHHHHHHHhCC----CEEEEeC-CchhHHHHHHHHHHHhCCCCCC-CCceeehH
Q 023805 66 ALKSSRCDGITREAVESA--PEFE-EVADKIFSILNG----RVWAGHN-IRRFDCARIKEAFAEIGKPAPV-PVGMIDSL 136 (277)
Q Consensus 66 ~~~~~~~~GIt~e~l~~a--~~f~-ev~~~l~~~l~~----~~lv~hn-~~~fD~~~L~~~~~~~g~~~p~-~~~~iDt~ 136 (277)
++++.++||||+++|+++ |+|. +++.+|.+|+++ .++|||| + .||+.||++++.++|++.+. ...++|++
T Consensus 78 ~~~~~~i~GIt~~~l~~~g~p~~~~ev~~~~~~fl~~~~~~~~lVaHNav-~FD~~fL~~~~~r~g~~~~~~~~~~iDtl 156 (242)
T 3mxm_B 78 SPGASEITGLSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGD-RYDFPLLQTELARLSTPSPLDGTFCVDSI 156 (242)
T ss_dssp CHHHHHHHCCCHHHHHHTTCCCSCHHHHHHHHHHHHTSCSSEEEEETTTT-TTHHHHHHHHHHTSSSCCTTTTCEEEEHH
T ss_pred CHHHHHhcCCCHHHHHhcCCCchhHHHHHHHHHHHhcCCCCCEEEEcCCh-HhhHHHHHHHHHHcCCCCCccCCeEeehH
Confidence 999999999999999988 8996 999999999988 8999999 6 99999999999999998753 34689999
Q ss_pred HHHHHHh---C----CCCCCCCHHHHHHH-hCCC-CCCCChHHHHHHHHHHHHHHHHhhhcc
Q 023805 137 GVLTEKF---G----RRAGNMKMATLASY-FGLG-QQKHRSLDDVRMNLEVLKHCATVLFLE 189 (277)
Q Consensus 137 ~l~~~~~---~----~~~~~~~L~~La~~-~gi~-~~~H~Al~DA~~t~~l~~~l~~~l~~~ 189 (277)
.+++.+. . +..++++|++|+++ ||++ ..+|+|++||++|++|+.++.+.+..|
T Consensus 157 ~l~r~l~~~~~p~~~~~~~~~~L~~l~~~~~gi~~~~~H~Al~Da~ata~l~~~~~~~~~~~ 218 (242)
T 3mxm_B 157 AALKALEQASSPSGNGSRKSYSLGSIYTRLYWQAPTDSHTAEGDDLTLLSICQWKPQALLQW 218 (242)
T ss_dssp HHHHHHHHHHCC------CCCSHHHHHHHHHSSCCSSTTSHHHHHHHHHHHHTSSHHHHHHH
T ss_pred HHHHHHHhhcCccccCCCCCcCHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHHHHHHHHHH
Confidence 8876544 1 23678999999975 9999 679999999999999999998887664
No 3
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=99.98 E-value=1.9e-31 Score=226.90 Aligned_cols=176 Identities=15% Similarity=0.141 Sum_probs=149.3
Q ss_pred CCCcEEEEEeccCCCCCC--CCCCceEEEEEEEEECCeeeeeceEEEeecCCCCCCCCchhhhhcCCCHHHHhCCCCHHH
Q 023805 11 GTAEIVFFDLETTVPRRA--GQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEE 88 (277)
Q Consensus 11 ~~~~~v~~D~ETTg~~~~--~~~~~IieIg~v~v~~~~~~~~~sf~~~v~P~~~~~i~~~~~~~~GIt~e~l~~a~~f~e 88 (277)
....|++||+||||+++. ...++|||||+|.++...+.++++|+.+|+|.....++++++++||||+++|+++++|.+
T Consensus 8 ~~~~~vviD~ETTGl~~~~~~~~~~Iieigav~~~~~~g~i~~~f~~lv~P~~~~~i~~~~~~i~GIt~~~l~~~~~~~~ 87 (204)
T 1w0h_A 8 YYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQ 87 (204)
T ss_dssp SSSEEEECCCEECCCTTCCTTSCCCEEEEEEEEEETTTCSEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHH
T ss_pred CcCEEEEEEEecCCcCCCCCCCCCcEEEEEEEEEECCCCEEeeeeeeEECCCCCCccCHHHHHHhCCCHHHHhCCCCHHH
Confidence 456799999999998752 135799999999998422233578999999997557999999999999999999999999
Q ss_pred HHHHHHHHhCCCE-------EEEeCCchhHHH-HHHHHHHHhCCCCCCC-CceeehHHHHHHHhCCCCCCCCHHHHHHHh
Q 023805 89 VADKIFSILNGRV-------WAGHNIRRFDCA-RIKEAFAEIGKPAPVP-VGMIDSLGVLTEKFGRRAGNMKMATLASYF 159 (277)
Q Consensus 89 v~~~l~~~l~~~~-------lv~hn~~~fD~~-~L~~~~~~~g~~~p~~-~~~iDt~~l~~~~~~~~~~~~~L~~La~~~ 159 (277)
++.+|.+|+++.+ +|+||+ .||+. +|+.++.++|++.|.. ..++|++.++...+.....+++|++++++|
T Consensus 88 v~~~~~~~l~~~~~~~~~~~lv~hn~-~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~~~~~~L~~l~~~~ 166 (204)
T 1w0h_A 88 VLKKVIDWMKLKELGTKYKYSLLTDG-SWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKL 166 (204)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESS-TTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCCcEEEEEEC-cchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCCCccchHHHHHHHc
Confidence 9999999997764 999999 99997 9999999999987753 269999998876664323468999999999
Q ss_pred CCC-C-CCCChHHHHHHHHHHHHHHHHhhh
Q 023805 160 GLG-Q-QKHRSLDDVRMNLEVLKHCATVLF 187 (277)
Q Consensus 160 gi~-~-~~H~Al~DA~~t~~l~~~l~~~l~ 187 (277)
|++ . .+|+|++||++|++|+.++++++.
T Consensus 167 gi~~~~~~H~Al~Da~~ta~l~~~l~~~~~ 196 (204)
T 1w0h_A 167 GMDYDGRPHCGLDDSKNIARIAVRMLQDGC 196 (204)
T ss_dssp TCCCCSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCccCcHHHHHHHHHHHHHHHHCCC
Confidence 998 3 589999999999999999998653
No 4
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=99.97 E-value=1.7e-31 Score=240.48 Aligned_cols=182 Identities=20% Similarity=0.261 Sum_probs=153.5
Q ss_pred CCCCCCCCCCCcEEEEEeccCCCCCCCCCCceEEEEEEEEECCee-----------------eeeceEEEeecCCCCCCC
Q 023805 3 GFIPSQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKL-----------------VELESFSTLIKPKDLSAV 65 (277)
Q Consensus 3 ~~~~~~~~~~~~~v~~D~ETTg~~~~~~~~~IieIg~v~v~~~~~-----------------~~~~sf~~~v~P~~~~~i 65 (277)
|+...++...+.||+||+||||+++ ..++|||||+|.++++.+ .+++.|+++|+|.. .|
T Consensus 2 ~~~~~~~~~~~tfVv~DlETTGL~~--~~d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~lI~P~~--~I 77 (314)
T 3u3y_B 2 GSQTLPHGHMQTLIFLDLEATGLPS--SRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGK--AC 77 (314)
T ss_dssp ----CCSCCCSEEEEEEEEESSCGG--GCCCEEEEEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEECBCSS--CC
T ss_pred CCCCCCccccCCEEEEEEECCCCCC--CCCeEEEEEEEEEECCccccccccccccccccccceeeeeEEEEECCCC--CC
Confidence 4556666778899999999999997 678999999999997632 23578999999998 89
Q ss_pred CchhhhhcCCCHHHHhCC--CCH-HHHHHHHHHHhCC----CEEEEeC-CchhHHHHHHHHHHHhCCCCCC-CCceeehH
Q 023805 66 ALKSSRCDGITREAVESA--PEF-EEVADKIFSILNG----RVWAGHN-IRRFDCARIKEAFAEIGKPAPV-PVGMIDSL 136 (277)
Q Consensus 66 ~~~~~~~~GIt~e~l~~a--~~f-~ev~~~l~~~l~~----~~lv~hn-~~~fD~~~L~~~~~~~g~~~p~-~~~~iDt~ 136 (277)
++++.++||||+++++++ ++| ++++.+|.+|+++ .++|||| + .||+.||++++.++|++.+. ...++|++
T Consensus 78 ~~~a~~IhGIT~e~l~~aG~P~f~~ev~~~l~~fL~~~~~~~vLVAHNga-~FD~~FL~~el~r~Gl~~~~~~~~~iDTL 156 (314)
T 3u3y_B 78 SPGASEITGLSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGD-RYDFPLLQTELARLSTPSPLDGTFCVDSI 156 (314)
T ss_dssp CHHHHHHHSCCHHHHHHTTCCBSCHHHHHHHHHHHHTSCSSEEEEETTTT-TTHHHHHHHHHHTSSSCCTTTTCEEEEHH
T ss_pred CHHHHHhcCCCHHHHHhCCCCCcHHHHHHHHHHHHhcCCCCcEEEEeCcH-HHHHHHHHHHHHHcCCCCCCCCceEEeHH
Confidence 999999999999999998 899 7999999999988 8999999 8 99999999999999998763 34689999
Q ss_pred HHHHHHh---CCC----CCCCCHHHHHHH-hCCC-CCCCChHHHHHHHHHHHHHHHHhhhcc
Q 023805 137 GVLTEKF---GRR----AGNMKMATLASY-FGLG-QQKHRSLDDVRMNLEVLKHCATVLFLE 189 (277)
Q Consensus 137 ~l~~~~~---~~~----~~~~~L~~La~~-~gi~-~~~H~Al~DA~~t~~l~~~l~~~l~~~ 189 (277)
.++..+. .+. .++++|++|+++ ||++ ..+|+|++||++|++|+.++.+++..|
T Consensus 157 ~l~r~L~r~~~P~~~~~~~~~~L~~L~~~l~gi~~~~aHrAl~DA~ata~lf~~l~~~~l~~ 218 (314)
T 3u3y_B 157 AALKALEQASSPSGNGSRKSYSLGSIYTRLYWQAPTDSHTAEGHVLTLLSICQWKPQALLQW 218 (314)
T ss_dssp HHHHHHHTTC-------CCCCSHHHHHHHHHSSCCSCSSSHHHHHHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHhCccccccCCCCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665332 222 378999999998 9999 689999999999999999999887553
No 5
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=99.97 E-value=7.5e-31 Score=228.57 Aligned_cols=178 Identities=21% Similarity=0.257 Sum_probs=149.2
Q ss_pred CCCCCCCcEEEEEeccCCCCCCCCCCceEEEEEEEEECCe--------------eeeeceEEEeecCCCCCCCCchhhhh
Q 023805 7 SQAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRK--------------LVELESFSTLIKPKDLSAVALKSSRC 72 (277)
Q Consensus 7 ~~~~~~~~~v~~D~ETTg~~~~~~~~~IieIg~v~v~~~~--------------~~~~~sf~~~v~P~~~~~i~~~~~~~ 72 (277)
+++.....+|+||+||||+++ ..++|||||++.++++. ..++++|+.+|+|.. .++++++++
T Consensus 4 ~~~~~~~~~v~iD~ETTGl~~--~~~~IieIg~v~~~~~~~~~~~~~~~~~~~~~~i~~~f~~lv~P~~--~i~~~~~~i 79 (238)
T 1y97_A 4 SEAPRAETFVFLDLEATGLPS--VEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPER--PFTAKASEI 79 (238)
T ss_dssp CSSCCCSEEEEEEEEESSCGG--GCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSS--CCCHHHHHH
T ss_pred CCCCccCeEEEEEeeCCCcCC--CCCcEEEEEEEEecccccccccccccccccccccceeeEEEECCCC--cCCHHHHHH
Confidence 456666789999999999987 56899999999999651 134578999999998 899999999
Q ss_pred cCCCHHHH--hCCCCH-HHHHHHHHHHhCC----CEEEEeCCchhHHHHHHHHHHHhCCCCCCCCceeehHHHHHHHhC-
Q 023805 73 DGITREAV--ESAPEF-EEVADKIFSILNG----RVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFG- 144 (277)
Q Consensus 73 ~GIt~e~l--~~a~~f-~ev~~~l~~~l~~----~~lv~hn~~~fD~~~L~~~~~~~g~~~p~~~~~iDt~~l~~~~~~- 144 (277)
||||+++| +++++| ++++..|.+|+++ .++||||+..||+.+|++++.++|+.++....++||+.++...+.
T Consensus 80 ~GIt~~~l~~~~~p~f~~~v~~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~~~~ 159 (238)
T 1y97_A 80 TGLSSEGLARCRKAGFDGAVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRA 159 (238)
T ss_dssp HCCCHHHHHHTTCCCSCHHHHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHH
T ss_pred hCCCHHHHhhcCCCccHHHHHHHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHHHhc
Confidence 99999999 578999 5999999999986 799999977999999999999999988754569999988776652
Q ss_pred -------CCCCCCCHHHHHH-HhCCC-CCCCChHHHHHHHHHHHHHHHHhhhc
Q 023805 145 -------RRAGNMKMATLAS-YFGLG-QQKHRSLDDVRMNLEVLKHCATVLFL 188 (277)
Q Consensus 145 -------~~~~~~~L~~La~-~~gi~-~~~H~Al~DA~~t~~l~~~l~~~l~~ 188 (277)
+..++++|+++++ +||++ ..+|+|++||+++++|+.++.+.+..
T Consensus 160 ~~p~~~~p~~~~~~L~~l~~~~~gi~~~~~H~Al~Da~~ta~l~~~l~~~~~~ 212 (238)
T 1y97_A 160 HSHGTRARGRQGYSLGSLFHRYFRAEPSAAHSAEGDVHTLLLIFLHRAAELLA 212 (238)
T ss_dssp C----------CCSHHHHHHHHHSSCCC---CHHHHHHHHHHHHHHTHHHHHH
T ss_pred cCccccCCCCCCCCHHHHHHHHhCCCCccCccHHHHHHHHHHHHHHHHHHHHH
Confidence 5567899999999 69998 68999999999999999999987765
No 6
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=99.97 E-value=2.4e-30 Score=218.72 Aligned_cols=168 Identities=24% Similarity=0.311 Sum_probs=145.3
Q ss_pred CCcEEEEEeccCCCCCC---CCCCceEEEEEEEEECCeeeeeceEEEeecCCCCCCCCchhhhhcCCCHHHHhCCCCHHH
Q 023805 12 TAEIVFFDLETTVPRRA---GQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEE 88 (277)
Q Consensus 12 ~~~~v~~D~ETTg~~~~---~~~~~IieIg~v~v~~~~~~~~~sf~~~v~P~~~~~i~~~~~~~~GIt~e~l~~a~~f~e 88 (277)
..++++||+||||+++. ...++|||||++.++++... .+.|+.+|+|.. .++++++++||||+++|+++++|.+
T Consensus 8 ~~~~vviD~ETTGl~~~~~~~~~~~Iieig~v~~~~~~~~-~~~f~~lv~P~~--~i~~~~~~i~GIt~~~l~~~~~~~~ 84 (194)
T 2gui_A 8 ITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLT-GNNFHVYLKPDR--LVDPEAFGVHGIADEFLLDKPTFAE 84 (194)
T ss_dssp CCEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEETTEEC-SCCEEEECCCSS--CCCHHHHHHHCCCHHHHTTSCCHHH
T ss_pred cCCEEEEEeeCCCCCCcccCCCCCEEEEEEEEEEECCeEe-ccEEEEEECcCC--cCCHHHHHhhCcCHHHHhCCCCHHH
Confidence 35799999999999762 12479999999999976543 357999999997 8999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCchhHHHHHHHHHHHhCCCCCC-C--CceeehHHHHHHHhCCCCCCCCHHHHHHHhCCC-C-
Q 023805 89 VADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPV-P--VGMIDSLGVLTEKFGRRAGNMKMATLASYFGLG-Q- 163 (277)
Q Consensus 89 v~~~l~~~l~~~~lv~hn~~~fD~~~L~~~~~~~g~~~p~-~--~~~iDt~~l~~~~~~~~~~~~~L~~La~~~gi~-~- 163 (277)
++.+|.+|+++.++||||+ .||+.+|+.++.++|++.|. . ..++|++.++... .+.. .++|++|+++||++ .
T Consensus 85 v~~~~~~~l~~~~lv~hn~-~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~-~p~~-~~~L~~l~~~~gi~~~~ 161 (194)
T 2gui_A 85 VADEFMDYIRGAELVIHNA-AFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKM-FPGK-RNSLDALCARYEIDNSK 161 (194)
T ss_dssp HHHHHHHHHTTSEEEETTH-HHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHH-STTS-CCSHHHHHHHTTCCCTT
T ss_pred HHHHHHHHHCCCeEEEEch-HHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHH-cCCC-CCCHHHHHHHcCcCCCC
Confidence 9999999999999999999 99999999999999998762 2 4699999877554 4543 57999999999998 3
Q ss_pred -CCCChHHHHHHHHHHHHHHHHh
Q 023805 164 -QKHRSLDDVRMNLEVLKHCATV 185 (277)
Q Consensus 164 -~~H~Al~DA~~t~~l~~~l~~~ 185 (277)
.+|+|++||+++++|+.++.++
T Consensus 162 ~~~H~Al~Da~~ta~l~~~l~~~ 184 (194)
T 2gui_A 162 RTLHGALLDAQILAEVYLAMTGG 184 (194)
T ss_dssp CSSCCHHHHHHHHHHHHHHHTC-
T ss_pred CCCCChHHHHHHHHHHHHHHHhc
Confidence 4899999999999999988754
No 7
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=99.97 E-value=3.3e-30 Score=232.10 Aligned_cols=175 Identities=14% Similarity=0.152 Sum_probs=150.0
Q ss_pred CCCcEEEEEeccCCCCCC--CCCCceEEEEEEEEECCeeeeeceEEEeecCCCCCCCCchhhhhcCCCHHHHhCCCCHHH
Q 023805 11 GTAEIVFFDLETTVPRRA--GQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEE 88 (277)
Q Consensus 11 ~~~~~v~~D~ETTg~~~~--~~~~~IieIg~v~v~~~~~~~~~sf~~~v~P~~~~~i~~~~~~~~GIt~e~l~~a~~f~e 88 (277)
....||+||+||||+++. ...++|||||+|.++.+.+.+++.|+.+|+|.....++++++++||||+++|+++++|.+
T Consensus 76 ~~~~~vviD~ETTGl~~~~~~~~~~IIeIgaV~v~~~~g~i~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~v~~ap~~~e 155 (299)
T 1zbh_A 76 YYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQ 155 (299)
T ss_dssp SCSEEEEECCEECCCTTCCTTCCCCEEEEEEEEEETTTCCEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHH
T ss_pred CCceEEEEEeecccCCCCCCCCCCceEEEEEEEEECCCCeEeeeeeeeecCCCCCCCCHHHHHHhCCCHHHHhcCCCHHH
Confidence 356899999999998631 146799999999999754455689999999997557999999999999999999999999
Q ss_pred HHHHHHHHhCCC-------EEEEeCCchhHHH-HHHHHHHHhCCCCCC-CCceeehHHHHHHHhCCCCCCCCHHHHHHHh
Q 023805 89 VADKIFSILNGR-------VWAGHNIRRFDCA-RIKEAFAEIGKPAPV-PVGMIDSLGVLTEKFGRRAGNMKMATLASYF 159 (277)
Q Consensus 89 v~~~l~~~l~~~-------~lv~hn~~~fD~~-~L~~~~~~~g~~~p~-~~~~iDt~~l~~~~~~~~~~~~~L~~La~~~ 159 (277)
|+.+|.+|+++. ++||||+ .||+. ||..+|.++|++.|. ...++|++.++...++...+.++|.+|+++|
T Consensus 156 vl~~f~~~l~~~~~~~~~~~lVahn~-~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~ 234 (299)
T 1zbh_A 156 VLKKVIDLMKLKELGTKYKYSLLTDG-SWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKL 234 (299)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESS-SHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHHT
T ss_pred HHHHHHHHHhhcccCCCCcEEEEEeC-HHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCCCCccHHHHHHHc
Confidence 999999999764 9999999 99999 999999999998773 2369999988766653222248999999999
Q ss_pred CCC-C-CCCChHHHHHHHHHHHHHHHHhh
Q 023805 160 GLG-Q-QKHRSLDDVRMNLEVLKHCATVL 186 (277)
Q Consensus 160 gi~-~-~~H~Al~DA~~t~~l~~~l~~~l 186 (277)
|++ . .+|+|++||++|++|+.++++.+
T Consensus 235 gi~~~g~~H~Al~DA~ata~l~~~l~~~~ 263 (299)
T 1zbh_A 235 GMDYDGRPNCGLDDSKNIARIAVRMLQDG 263 (299)
T ss_dssp TCCCCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhC
Confidence 998 3 58999999999999999999865
No 8
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=99.97 E-value=1.2e-29 Score=219.35 Aligned_cols=172 Identities=19% Similarity=0.177 Sum_probs=147.3
Q ss_pred CCCCcEEEEEeccCCCCCCCCCCceEEEEEEEEE---CCeeeeeceEEEeecCCCCCCCCchhhhhcCCCHH-HHhCCCC
Q 023805 10 AGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVC---PRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE-AVESAPE 85 (277)
Q Consensus 10 ~~~~~~v~~D~ETTg~~~~~~~~~IieIg~v~v~---~~~~~~~~sf~~~v~P~~~~~i~~~~~~~~GIt~e-~l~~a~~ 85 (277)
.....+|+||+||||+++ ..++|||||+|.++ ++.+.+.+.|+.+|+|.....++++++++||||++ +++++++
T Consensus 26 ~~~~~~vviD~ETTGl~~--~~~~IieIg~v~~~~~~~g~i~~~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~~v~~~~~ 103 (224)
T 2f96_A 26 FRGYLPVVVDVETGGFNS--ATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAVQ 103 (224)
T ss_dssp TTTEEEEEEEEEESSSCT--TTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCBC
T ss_pred ccCCcEEEEEeeCCCCCC--CCCeeEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCC
Confidence 345678999999999987 56899999999998 55544568999999995333899999999999997 5899999
Q ss_pred HHHHHHHHHHHhC---------CCEEEEeCCchhHHHHHHHHHHHhCCCC-CC-CCceeehHHHHHHHhCCCCCCCCHHH
Q 023805 86 FEEVADKIFSILN---------GRVWAGHNIRRFDCARIKEAFAEIGKPA-PV-PVGMIDSLGVLTEKFGRRAGNMKMAT 154 (277)
Q Consensus 86 f~ev~~~l~~~l~---------~~~lv~hn~~~fD~~~L~~~~~~~g~~~-p~-~~~~iDt~~l~~~~~~~~~~~~~L~~ 154 (277)
+.+++.+|.+|+. +.++||||+ .||+.+|++++.++|+.. |+ ...++||+.+++..+ + +++|..
T Consensus 104 ~~~v~~~~~~~l~~~~~~~~~~~~~lV~hn~-~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~-~---~~~L~~ 178 (224)
T 2f96_A 104 EEAALTEIFRGIRKALKANGCKRAILVGHNS-SFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAY-G---QTVLAK 178 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEEEEETTH-HHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHH-S---CCSHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccCCCEEEEeCh-hhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHHc-C---CCCHHH
Confidence 9999999999984 679999999 999999999999999874 43 246899998887655 3 479999
Q ss_pred HHHHhCCC--C-CCCChHHHHHHHHHHHHHHHHhhhc
Q 023805 155 LASYFGLG--Q-QKHRSLDDVRMNLEVLKHCATVLFL 188 (277)
Q Consensus 155 La~~~gi~--~-~~H~Al~DA~~t~~l~~~l~~~l~~ 188 (277)
|+++||++ . .+|+|++||++|++|+.++++++..
T Consensus 179 l~~~~gi~~~~~~~H~Al~Da~~ta~l~~~l~~~~~~ 215 (224)
T 2f96_A 179 ACQAAGMEFDNREAHSARYDTEKTAELFCGIVNRWKE 215 (224)
T ss_dssp HHHHTTCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 2 6899999999999999999987654
No 9
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=99.97 E-value=1.3e-29 Score=219.27 Aligned_cols=174 Identities=14% Similarity=0.184 Sum_probs=144.8
Q ss_pred CcEEEEEeccCCCCCCCCCCceEEEEEEEEECCeeeeeceEEEeecCCCCCCCCchhhhhcCCCHHHHhCCCCHHHHHHH
Q 023805 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADK 92 (277)
Q Consensus 13 ~~~v~~D~ETTg~~~~~~~~~IieIg~v~v~~~~~~~~~sf~~~v~P~~~~~i~~~~~~~~GIt~e~l~~a~~f~ev~~~ 92 (277)
..+++||+||||+++....++|||||+|.++++.+.++++|+.+|+|.....++++++++||||+++++++++|.+++.+
T Consensus 31 ~~~vviD~ETTGl~~~~d~~~IieIgav~v~~~~~~i~~~f~~lV~P~~~~~i~~~~~~ltGIt~~~v~~a~~~~~v~~~ 110 (224)
T 2xri_A 31 HYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLER 110 (224)
T ss_dssp SEEEEECCEECCCC-CCSSCCEEEEEEEEEETTTCCEEEEEEEECCCSSSCSCCHHHHHHHCCCHHHHTTCCCHHHHHHH
T ss_pred CeEEEEEEEcCCCCCCCCCcceEEEEEEEEecCCcEEeeeeeeEECCCCCCcCCHHHHHHhCcCHHHHcCCCCHHHHHHH
Confidence 57999999999998722224999999999998755556899999999975579999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCc-------hhHHHH-HHHHHHHhCCCCCCC-CceeehHHHHHHHhCCCCCCCCHHHHHHHhCCC-
Q 023805 93 IFSILNGRVWAGHNIR-------RFDCAR-IKEAFAEIGKPAPVP-VGMIDSLGVLTEKFGRRAGNMKMATLASYFGLG- 162 (277)
Q Consensus 93 l~~~l~~~~lv~hn~~-------~fD~~~-L~~~~~~~g~~~p~~-~~~iDt~~l~~~~~~~~~~~~~L~~La~~~gi~- 162 (277)
|.+|+++.++||||+. .||+.+ |+.++.++|++.|.. ..++|+...+.... ...++++|.+|+++||++
T Consensus 111 f~~~l~~~~lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~-~~~p~~~L~~l~~~~gi~~ 189 (224)
T 2xri_A 111 VDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAM-GCWPKNGLLDMNKGLSLQH 189 (224)
T ss_dssp HHHHHHHTTTTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHH-TSCCTTTHHHHHHHTTCCC
T ss_pred HHHHHhhcccccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHHHh-ccCCCCCHHHHHHHcCCCC
Confidence 9999998888888874 899996 789999999988742 36999654432222 223358999999999998
Q ss_pred -CCCCChHHHHHHHHHHHHHHHHhhh
Q 023805 163 -QQKHRSLDDVRMNLEVLKHCATVLF 187 (277)
Q Consensus 163 -~~~H~Al~DA~~t~~l~~~l~~~l~ 187 (277)
+.+|+|++||++|++|+.++++++.
T Consensus 190 ~~~~H~Al~DA~~ta~l~~~l~~~g~ 215 (224)
T 2xri_A 190 IGRPHSGIDDCKNIANIMKTLAYRGF 215 (224)
T ss_dssp CSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCcChHHHHHHHHHHHHHHHHcCC
Confidence 3589999999999999999988653
No 10
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=99.97 E-value=8.3e-30 Score=233.58 Aligned_cols=174 Identities=15% Similarity=0.171 Sum_probs=149.3
Q ss_pred CCcEEEEEeccCCCCC--CCCCCceEEEEEEEEECCeeeeeceEEEeecCCCCCCCCchhhhhcCCCHHHHhCCCCHHHH
Q 023805 12 TAEIVFFDLETTVPRR--AGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEV 89 (277)
Q Consensus 12 ~~~~v~~D~ETTg~~~--~~~~~~IieIg~v~v~~~~~~~~~sf~~~v~P~~~~~i~~~~~~~~GIt~e~l~~a~~f~ev 89 (277)
...||+||+||||+++ ....++|||||+|.++.+.+.+++.|+.+|+|.....|+++++++||||+++|+++++|.+|
T Consensus 127 ~~~~vviD~ETTGl~~~~~~~~deIIEIgaV~vd~~~g~i~~~f~~lVkP~~~~~I~~~~t~ihGIT~e~v~~ap~~~eV 206 (349)
T 1zbu_A 127 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQV 206 (349)
T ss_dssp CSEEEECCCEECCCTTCCTTCCCCEEECCEEEEETTTTEEEEEECCBEECSSSCSCCHHHHHHHCCCHHHHHTSEEHHHH
T ss_pred CCeEEEEEEecCCCCCcCCCCCCeEEEEEEEEEECCCceEeEEEEEEECCCCCCCCCHHHHHHhCCCHHHHhCCCCHHHH
Confidence 5689999999999852 11467999999999997544556899999999975579999999999999999999999999
Q ss_pred HHHHHHHhCCC-------EEEEeCCchhHHH-HHHHHHHHhCCCCCC-CCceeehHHHHHHHhCCCCCCCCHHHHHHHhC
Q 023805 90 ADKIFSILNGR-------VWAGHNIRRFDCA-RIKEAFAEIGKPAPV-PVGMIDSLGVLTEKFGRRAGNMKMATLASYFG 160 (277)
Q Consensus 90 ~~~l~~~l~~~-------~lv~hn~~~fD~~-~L~~~~~~~g~~~p~-~~~~iDt~~l~~~~~~~~~~~~~L~~La~~~g 160 (277)
+.+|.+|+.+. ++||||+ .||+. ||..+|.++|+..|. ...++|++.++...++...+.++|.+|+++||
T Consensus 207 l~~f~~~l~~~~~~~~~~~lVaHNa-~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~g 285 (349)
T 1zbu_A 207 LKKVIDLMKLKELGTKYKYSLLTDG-SWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLG 285 (349)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESS-SHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGGSHHHHHHHTT
T ss_pred HHHHHHHHhcccccCCCcEEEEECc-HhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCCCCCCHHHHHHHcC
Confidence 99999999764 9999999 99999 999999999998773 33689999887666532222489999999999
Q ss_pred CC-C-CCCChHHHHHHHHHHHHHHHHhh
Q 023805 161 LG-Q-QKHRSLDDVRMNLEVLKHCATVL 186 (277)
Q Consensus 161 i~-~-~~H~Al~DA~~t~~l~~~l~~~l 186 (277)
++ . .+|+|++||++|++|+.+++..+
T Consensus 286 i~~~g~~HrAl~DA~ata~ll~~ll~~~ 313 (349)
T 1zbu_A 286 MDYDGRPHCGLDDSKNIARIAVRMLQDG 313 (349)
T ss_dssp CCCCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 98 3 58999999999999999998865
No 11
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=99.96 E-value=1.3e-28 Score=214.14 Aligned_cols=172 Identities=17% Similarity=0.137 Sum_probs=148.7
Q ss_pred CCCCcEEEEEeccCCCCCCCCCCceEEEEEEEEE---CCeeeeeceEEEeecCCCCCCCCchhhhhcCCCHH-HHhCCCC
Q 023805 10 AGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVC---PRKLVELESFSTLIKPKDLSAVALKSSRCDGITRE-AVESAPE 85 (277)
Q Consensus 10 ~~~~~~v~~D~ETTg~~~~~~~~~IieIg~v~v~---~~~~~~~~sf~~~v~P~~~~~i~~~~~~~~GIt~e-~l~~a~~ 85 (277)
.....+++||+||||+++ ..++|||||++.++ ++.+.+.++|+.+|+|.....+++++.++||||++ +++++++
T Consensus 34 l~~~~~vviD~ETTGl~~--~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~GIt~e~~v~~~~~ 111 (235)
T 3v9w_A 34 FRGFYPVVIDVETAGFNA--KTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVS 111 (235)
T ss_dssp TTTEEEEEEEEEESSSCT--TTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHCCCTTCGGGCCBC
T ss_pred ccCCcEEEEEEeCCCCCC--CCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCC
Confidence 345679999999999987 67899999999997 66654568999999996444899999999999999 9999999
Q ss_pred HHHHHHHHHHHh---------CCCEEEEeCCchhHHHHHHHHHHHhCCCC-CCC-CceeehHHHHHHHhCCCCCCCCHHH
Q 023805 86 FEEVADKIFSIL---------NGRVWAGHNIRRFDCARIKEAFAEIGKPA-PVP-VGMIDSLGVLTEKFGRRAGNMKMAT 154 (277)
Q Consensus 86 f~ev~~~l~~~l---------~~~~lv~hn~~~fD~~~L~~~~~~~g~~~-p~~-~~~iDt~~l~~~~~~~~~~~~~L~~ 154 (277)
+.+++.+|.+|+ ++.++||||+ +||+.+|+.++.++|++. |+. ..++||+.++...+ + +++|+.
T Consensus 112 ~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~-~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~~-p---~~~L~~ 186 (235)
T 3v9w_A 112 GYEALHEIFKVVRKGIKASGCNRAIMVAHNA-NFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLAL-G---QTVLSK 186 (235)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCCEEEEEETTT-HHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHHH-S---CCSHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCCcEEEEeCh-HHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHHh-C---CCCHHH
Confidence 999999999999 4679999999 999999999999999975 321 35899998775554 4 479999
Q ss_pred HHHHhCCC-C--CCCChHHHHHHHHHHHHHHHHhhhc
Q 023805 155 LASYFGLG-Q--QKHRSLDDVRMNLEVLKHCATVLFL 188 (277)
Q Consensus 155 La~~~gi~-~--~~H~Al~DA~~t~~l~~~l~~~l~~ 188 (277)
|+++||++ . .+|+|++||.+|++|+.+|++++..
T Consensus 187 l~~~~gi~~~~~~~H~Al~DA~~ta~l~~~l~~~l~~ 223 (235)
T 3v9w_A 187 ACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWKR 223 (235)
T ss_dssp HHHHHTCCCCTTTTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCCCcChHHHHHHHHHHHHHHHHHHHh
Confidence 99999998 2 6899999999999999999998755
No 12
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=99.96 E-value=7.3e-29 Score=224.08 Aligned_cols=174 Identities=17% Similarity=0.202 Sum_probs=142.9
Q ss_pred CCCcEEEEEeccCCCCCCCCCC---ceEEEEEEEEECCeeeeec--eEEEeecCCCCCCCCchhhhhcCCCHHHHhCCCC
Q 023805 11 GTAEIVFFDLETTVPRRAGQRF---WVLEFGAIIVCPRKLVELE--SFSTLIKPKDLSAVALKSSRCDGITREAVESAPE 85 (277)
Q Consensus 11 ~~~~~v~~D~ETTg~~~~~~~~---~IieIg~v~v~~~~~~~~~--sf~~~v~P~~~~~i~~~~~~~~GIt~e~l~~a~~ 85 (277)
....+|+||+||||+++ ..+ +|||||+|.++...+.+++ +|+.+|+|...+.++++++++||||+++|+++++
T Consensus 17 ~~~~~vviD~ETTGl~~--~~d~~~eIIEIgaV~vd~~~g~i~~~~~f~~lV~P~~~p~i~~~~~~ltGIt~e~v~~ap~ 94 (308)
T 3cg7_A 17 PFDTLLILDFETTSDAA--NQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDFTGIPQRSIDTADT 94 (308)
T ss_dssp CCSEEEEEEEEECCBTT--BCSCCCCEEEEEEEEEETTTTEEEEEEEEEEECBCSSBCSCCHHHHHHHCCCHHHHHTSCB
T ss_pred CCCeEEEEEeecCCCCC--CCCCCCCeEEEEEEEEEcCCCEEeeccceeeEECCCCCCCCCHHHHHHcCCCHHHHhcCCC
Confidence 34579999999999987 333 9999999999753233345 8999999997334999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCC-----chhHH-HHHHHHHHHhCCCCCCC-CceeehHHHHHHHhCCC-----CCCCCHH
Q 023805 86 FEEVADKIFSILNGRVWAGHNI-----RRFDC-ARIKEAFAEIGKPAPVP-VGMIDSLGVLTEKFGRR-----AGNMKMA 153 (277)
Q Consensus 86 f~ev~~~l~~~l~~~~lv~hn~-----~~fD~-~~L~~~~~~~g~~~p~~-~~~iDt~~l~~~~~~~~-----~~~~~L~ 153 (277)
|.+|+.+|.+|+++.++|+||+ +.||+ .+|..++.++|++.|.. ..++|++.++...+... .++++|.
T Consensus 95 ~~evl~~f~~~l~~~~lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~~~~~~L~ 174 (308)
T 3cg7_A 95 FDVVYEQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIG 174 (308)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCCCCCCSHHH
T ss_pred HHHHHHHHHHHHHhCCcCCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhccccccccccCcCHH
Confidence 9999999999998755555543 28999 69999999999988742 46899998887655321 1268999
Q ss_pred HHHHHhCCC-C-CCCChHHHHHHHHHHHHHHHHhh
Q 023805 154 TLASYFGLG-Q-QKHRSLDDVRMNLEVLKHCATVL 186 (277)
Q Consensus 154 ~La~~~gi~-~-~~H~Al~DA~~t~~l~~~l~~~l 186 (277)
+++++||++ . .+|+|++||+++++|+.++++..
T Consensus 175 ~l~~~~gi~~~~~~HrAl~DA~ata~l~~~l~~~~ 209 (308)
T 3cg7_A 175 KMNEYYDLPTIGRAHDAMDDCLNIATILQRMINMG 209 (308)
T ss_dssp HHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHHHcC
Confidence 999999998 3 45999999999999999998864
No 13
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=99.95 E-value=5.5e-28 Score=201.84 Aligned_cols=162 Identities=16% Similarity=0.190 Sum_probs=129.7
Q ss_pred CCCcEEEEEeccCCCCCCCCCCceEEEEEEEEECCeeeeeceEEEeecCCCC--CCCCchhhh---hcCCCHHHHhCCCC
Q 023805 11 GTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDL--SAVALKSSR---CDGITREAVESAPE 85 (277)
Q Consensus 11 ~~~~~v~~D~ETTg~~~~~~~~~IieIg~v~v~~~~~~~~~sf~~~v~P~~~--~~i~~~~~~---~~GIt~e~l~~a~~ 85 (277)
...++++||+||||+++ ..++|||||+|.+++++....+.|+.+|+|... ..+++++.+ +||||+++++++++
T Consensus 3 ~~~~~v~iD~ETTGl~~--~~~~IieIg~v~~~~~~~~~~~~~~~lv~P~~~i~~~i~~~~~~~~~itGIt~~~l~~~~~ 80 (180)
T 2igi_A 3 NENNLIWIDLEMTGLDP--ERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMG 80 (180)
T ss_dssp GGGCEEEEEEEESSSCT--TTCCEEEEEEEEECTTCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCCC
T ss_pred CCCcEEEEEeeCCCCCC--CCCceEEEEEEEEcCCCcEecCCcceEECCCHHHhhcCCHHHHHHHHHcCCCHHHHhcCCC
Confidence 34579999999999998 568999999998886654433459999999862 124667755 58999999999999
Q ss_pred HHHHHHHHHHHhCC------CEEEEeCCchhHHHHHHHHHHHhCCCCCCCCceee--hHH-HHHHHhCCCCCCCCHHHHH
Q 023805 86 FEEVADKIFSILNG------RVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID--SLG-VLTEKFGRRAGNMKMATLA 156 (277)
Q Consensus 86 f~ev~~~l~~~l~~------~~lv~hn~~~fD~~~L~~~~~~~g~~~p~~~~~iD--t~~-l~~~~~~~~~~~~~L~~La 156 (277)
|.+++.+|.+|+++ .++||||+ .||+.+|+.++.+++..++ ..++| ++. ++. .+.+..
T Consensus 81 ~~~v~~~~~~~l~~~~~~~~~~lv~hn~-~fD~~fL~~~~~~~~~~~~--~~~~d~~tl~~l~~-~~~p~~--------- 147 (180)
T 2igi_A 81 DREAELATLEFLKQWVPAGKSPICGNSI-GQDRRFLFKYMPELEAYFH--YRYLDVSTLKELAR-RWKPEI--------- 147 (180)
T ss_dssp HHHHHHHHHHHHTTTSCTTTSCEEESSH-HHHHHHHHHHCHHHHHHSC--SCEEETHHHHHHHH-HHCGGG---------
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEecCH-HHHHHHHHHHHHHhccCCC--cceeeHHHHHHHHH-HhChHh---------
Confidence 99999999999985 69999999 9999999999988774433 34899 763 443 444432
Q ss_pred HHhCCC-CCCCChHHHHHHHHHHHHHHHHhhhc
Q 023805 157 SYFGLG-QQKHRSLDDVRMNLEVLKHCATVLFL 188 (277)
Q Consensus 157 ~~~gi~-~~~H~Al~DA~~t~~l~~~l~~~l~~ 188 (277)
..|++ ..+|+|++||+++++|++++.+.+++
T Consensus 148 -~~~i~~~~~H~Al~Da~ata~l~~~~~~~~~~ 179 (180)
T 2igi_A 148 -LDGFTKQGTHQAMDDIRESVAELAYYREHFIK 179 (180)
T ss_dssp -GGGSCCCCCCCHHHHHHHHHHHHHHHHHHTBC
T ss_pred -hhCCCCcCCcCcHHHHHHHHHHHHHHHHHhhc
Confidence 13666 67899999999999999999998763
No 14
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=99.95 E-value=4.5e-28 Score=204.23 Aligned_cols=160 Identities=19% Similarity=0.266 Sum_probs=127.2
Q ss_pred CCcEEEEEeccCCCCCCCCCCceEEEEEEEEECCeeeeeceEEEeecCCCCCCCCchhhhhcCCCHHHHhCCCCHHHHHH
Q 023805 12 TAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVAD 91 (277)
Q Consensus 12 ~~~~v~~D~ETTg~~~~~~~~~IieIg~v~v~~~~~~~~~sf~~~v~P~~~~~i~~~~~~~~GIt~e~l~~a~~f~ev~~ 91 (277)
..++++||+||||+++. ...+|+|||++..++ .. + |+.+|+|.. +++++++++||||+++|+++++|.+++.
T Consensus 4 ~~~~vviD~ETTGl~~~-~~~~iiei~~v~~~g--~~-i--~~~lV~P~~--~i~~~~~~i~GIt~~~l~~a~~~~~v~~ 75 (189)
T 1wlj_A 4 SREVVAMDCEMVGLGPH-RESGLARCSLVNVHG--AV-L--YDKFIRPEG--EITDYRTRVSGVTPQHMVGATPFAVARL 75 (189)
T ss_dssp --CEEEEEEEEEEETTT-TEEEEEEEEEECTTC--CE-E--EEEEEECSS--CEEECCHHHHCCCHHHHTTCEEHHHHHH
T ss_pred CCeEEEEEeECcCcCCC-CCceEEEEEEEeCCC--CE-E--EeeEecCCC--CCCccccCCCCCCHHHHcCCCCHHHHHH
Confidence 45799999999999872 124788999875422 22 2 899999998 8999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEeCCchhHHHHHHHHHHHhCCCCCCCCceeehHHHHHH-H--hCCCCCCCCHHHHHHH-hCCC-CC--
Q 023805 92 KIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTE-K--FGRRAGNMKMATLASY-FGLG-QQ-- 164 (277)
Q Consensus 92 ~l~~~l~~~~lv~hn~~~fD~~~L~~~~~~~g~~~p~~~~~iDt~~l~~~-~--~~~~~~~~~L~~La~~-~gi~-~~-- 164 (277)
+|.+|+++.++||||+ .||+.+|+.. .|. ..++||+.++.. . ..+...+++|+.|+++ ||++ ..
T Consensus 76 ~~~~~l~~~~lV~hn~-~fD~~~L~~~-------~~~-~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~~~~~ 146 (189)
T 1wlj_A 76 EILQLLKGKLVVGHDL-KHDFQALKED-------MSG-YTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSL 146 (189)
T ss_dssp HHHHHHTTSEEEESSH-HHHHHHTTCC-------CTT-CEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCT
T ss_pred HHHHHHCCCEEEECCc-HHHHHHHHHh-------CCC-CceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCCCCCC
Confidence 9999999999999999 9999998743 222 358999876421 1 2344568999999998 7998 34
Q ss_pred -CCChHHHHHHHHHHHHHHHHhhhc
Q 023805 165 -KHRSLDDVRMNLEVLKHCATVLFL 188 (277)
Q Consensus 165 -~H~Al~DA~~t~~l~~~l~~~l~~ 188 (277)
+|+|++||++|++|+.++.+.+..
T Consensus 147 ~~H~Al~Da~ata~l~~~l~~~~~~ 171 (189)
T 1wlj_A 147 LGHSSVEDARATMELYQISQRIRAR 171 (189)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887643
No 15
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=99.94 E-value=3.1e-27 Score=199.97 Aligned_cols=161 Identities=17% Similarity=0.235 Sum_probs=128.5
Q ss_pred CCCcEEEEEeccCCCCCCCCCCceEEEEEEEEECCeeeeeceEEEeecCCCCCCC----Cchhhhh---cCCCHHHHhCC
Q 023805 11 GTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAV----ALKSSRC---DGITREAVESA 83 (277)
Q Consensus 11 ~~~~~v~~D~ETTg~~~~~~~~~IieIg~v~v~~~~~~~~~sf~~~v~P~~~~~i----~~~~~~~---~GIt~e~l~~a 83 (277)
...+|++||+||||+++ ..++|||||+|..+++.....+.|+.+|+|.. .+ ++++.++ ||||+++++++
T Consensus 7 ~~~~~vviD~ETTGl~p--~~d~IieIgav~~~~~~~~~~~~~~~~v~p~~--~i~~~~~~~~~~~~~itGIt~~~l~~~ 82 (194)
T 2gbz_A 7 GNDRLIWIDLEMTGLDT--DRDSIIEIATIVTDAQLNVLAEGPELAIAHSL--ETLEAMDEWNRNQHRRSGLWQRVLDSQ 82 (194)
T ss_dssp -CCEEEEEEEEESCSCT--TTCCEEEEEEEEEETTCCEEEECCCEECCCCH--HHHHTSCSHHHHHHHHHTHHHHHHHCC
T ss_pred CCCCEEEEEeECCCCCC--CCCccEEEEEEEEcCCcceeccCceEEEeCCH--HHhhccchHHHHHHHhhCCCHHHHhcC
Confidence 45689999999999998 67899999999976654233467999999986 44 6667666 99999999999
Q ss_pred CCHHHHHHHHHHHhCCCE------EEEeCCchhHHHHHHHHHHHhCCCCCCCCceeehHHHH--HHHhCCCCCCCCHHHH
Q 023805 84 PEFEEVADKIFSILNGRV------WAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVL--TEKFGRRAGNMKMATL 155 (277)
Q Consensus 84 ~~f~ev~~~l~~~l~~~~------lv~hn~~~fD~~~L~~~~~~~g~~~p~~~~~iDt~~l~--~~~~~~~~~~~~L~~L 155 (277)
++|.+++.+|.+|+++.+ +||||+ .||+.||++++.+++..++ ...+|+..+. .+.+.+. +
T Consensus 83 p~~~ev~~~~~~~l~~~~~~~~~~lvghn~-~FD~~fL~~~~~~~~~~~~--~~~~d~~~l~~l~~~~~p~--------~ 151 (194)
T 2gbz_A 83 VTHAQAEAQTVAFLGEWIRAGASPMCGNSI-CQDRRFLHRQMSRLERYFH--YRNLDVSTIKELARRWAPA--------V 151 (194)
T ss_dssp CCHHHHHHHHHHHHTTTCCTTSSCEEESSH-HHHHHHHHHHCHHHHHHSC--SCEEEHHHHHHHHHHHCGG--------G
T ss_pred CCHHHHHHHHHHHHHHhCCCCCceEEecCH-HHhHHHHHHHHHHhcccCC--CccccHHHHHHHHHHhCHH--------H
Confidence 999999999999999887 999999 9999999999988774333 3478976432 2333332 2
Q ss_pred HHHhCCC-CCCCChHHHHHHHHHHHHHHHHhhhc
Q 023805 156 ASYFGLG-QQKHRSLDDVRMNLEVLKHCATVLFL 188 (277)
Q Consensus 156 a~~~gi~-~~~H~Al~DA~~t~~l~~~l~~~l~~ 188 (277)
++ +++ ..+|+|++||++|+++++++.++++.
T Consensus 152 ~~--~i~~~~~H~Al~Da~ata~ll~~~~~~~~~ 183 (194)
T 2gbz_A 152 AS--GFAKSSAHTALSDVRDSIDELRHYRQFMGT 183 (194)
T ss_dssp GT--TCCCCSCCSHHHHHHHHHHHHHHHHTTSHH
T ss_pred Hh--CCCCCCCcccHHHHHHHHHHHHHHHHHhcc
Confidence 21 355 57899999999999999999987764
No 16
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=99.94 E-value=6.9e-27 Score=196.36 Aligned_cols=164 Identities=16% Similarity=0.195 Sum_probs=128.2
Q ss_pred CCCCCcEEEEEeccCCCCCCCCCCceEEEEEEEEECCeeeeeceEEEeecCCCC--CCCCchhhh---hcCCCHHHHhCC
Q 023805 9 AAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDL--SAVALKSSR---CDGITREAVESA 83 (277)
Q Consensus 9 ~~~~~~~v~~D~ETTg~~~~~~~~~IieIg~v~v~~~~~~~~~sf~~~v~P~~~--~~i~~~~~~---~~GIt~e~l~~a 83 (277)
.....++|+||+||||+++ ..++|||||+|..+++.....+.++.+|+++.. ..+++++.+ +||||.++++++
T Consensus 5 ~~~~~~~v~~D~ETTGL~p--~~d~IiEIgaV~~d~~~~i~~~~~~~~i~~p~~~l~~~~~~~~~ih~ltGIt~~~l~~~ 82 (186)
T 3tr8_A 5 DFSDDNLIWLDLEMTGLDP--ERDRIIEIATIVTNSHLDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVKNSS 82 (186)
T ss_dssp CCCTTCEEEEEEEESSSCT--TTCCEEEEEEEEECTTCCEEEECCCEECCCCHHHHTTSCHHHHHHHHHTSHHHHHHTCC
T ss_pred cCCCCcEEEEEEECCCCCC--CCCceEEEEEEEEcCCeEEeeeeEEEEEeCCccccccCCcccHHHHhccCCCHHHHhcC
Confidence 3456789999999999998 679999999996655433322335566864331 124566555 569999999999
Q ss_pred CCHHHHHHHHHHHh------CCCEEEEeCCchhHHHHHHHHHHHhCCCCCCCCceee--hHH-HHHHHhCCCCCCCCHHH
Q 023805 84 PEFEEVADKIFSIL------NGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID--SLG-VLTEKFGRRAGNMKMAT 154 (277)
Q Consensus 84 ~~f~ev~~~l~~~l------~~~~lv~hn~~~fD~~~L~~~~~~~g~~~p~~~~~iD--t~~-l~~~~~~~~~~~~~L~~ 154 (277)
+++.+++.+|.+|+ ++.++||||+ .||+.||++++.+.|..+++ .++| |+. +++ .+.|...
T Consensus 83 p~~~ev~~~~l~fl~~~~~~~~~~lvghn~-~FD~~FL~~~~~~~~~~~~~--~~iDvsTl~elar-~~~P~~~------ 152 (186)
T 3tr8_A 83 VDEVEAETLTLAFLEKYVSAGKSPLCGNSV-CQDRRFLSRYMPRLNQFFHY--RHLDVTTLKILAQ-RWAPQIA------ 152 (186)
T ss_dssp CCHHHHHHHHHHHHTTTSCTTCSCEEESST-HHHHHHHHHHCHHHHHHSCS--CEEEHHHHHHHHH-HHCHHHH------
T ss_pred CCHHHHHHHHHHHHHHhccCCCcEEEEEcH-HHhHHHHHHHHHHcCCCCCC--cEEeHHHHHHHHH-HHCcccc------
Confidence 99999999999999 7789999999 99999999999988865443 4899 876 654 4445321
Q ss_pred HHHHhCCC-CCCCChHHHHHHHHHHHHHHHHhhhc
Q 023805 155 LASYFGLG-QQKHRSLDDVRMNLEVLKHCATVLFL 188 (277)
Q Consensus 155 La~~~gi~-~~~H~Al~DA~~t~~l~~~l~~~l~~ 188 (277)
-+++ ...|+|++||++++++++++.+.+++
T Consensus 153 ----~~~~~~~~HrAl~Da~ati~~l~~y~~~~~~ 183 (186)
T 3tr8_A 153 ----AAHIKESQHLALQDIRDSIEELRYYRAHLLN 183 (186)
T ss_dssp ----TTSCCCCCSCHHHHHHHHHHHHHHHHHHTBC
T ss_pred ----ccCCCCCCcChHHHHHHHHHHHHHHHHHhhc
Confidence 1677 68999999999999999999998876
No 17
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=99.94 E-value=2.4e-26 Score=218.32 Aligned_cols=169 Identities=20% Similarity=0.189 Sum_probs=140.1
Q ss_pred CCCcEEEEEeccCCCCCCCCCCceEEEEEEEEECCeeeeece-EEEeecCCCCCCC--CchhhhhcCCCHHHHhCCCC-H
Q 023805 11 GTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELES-FSTLIKPKDLSAV--ALKSSRCDGITREAVESAPE-F 86 (277)
Q Consensus 11 ~~~~~v~~D~ETTg~~~~~~~~~IieIg~v~v~~~~~~~~~s-f~~~v~P~~~~~i--~~~~~~~~GIt~e~l~~a~~-f 86 (277)
....||+||+||||+++ ..++|||||+|.++.++.+ ++. |+.+|+|.. .+ ++.+..+||||+++|.+++. +
T Consensus 7 ~~~~~vv~DlETTGl~p--~~d~IIEIgaV~vd~~g~i-i~~~f~~lVkP~~--~ilp~p~a~~IhGIT~e~l~~ap~~~ 81 (482)
T 2qxf_A 7 QQSTFLFHDYETFGTHP--ALDRPAQFAAIRTDSEFNV-IGEPEVFYCKPAD--DYLPQPGAVLITGITPQEARAKGENE 81 (482)
T ss_dssp CCCEEEEEEEEESSSCT--TTSCEEEEEEEEECTTSCB-CSCCEEEEBCCCT--TCCCCHHHHHHHCCCHHHHHHHCBCH
T ss_pred CCCCEEEEEEECCCCCC--CCCeEEEEEEEEEECCCeE-EeeeeEEEECCCC--CCCCCHHHHHHhCCCHHHHhcCCCCH
Confidence 45689999999999997 5689999999999855443 355 999999998 55 68888999999999998764 4
Q ss_pred HHHHHHHHHHhC--CCEEEEeC-CchhHHHHHHHHHHHhCCCCCC-----CCceeehHHHHHHHhC--------C----C
Q 023805 87 EEVADKIFSILN--GRVWAGHN-IRRFDCARIKEAFAEIGKPAPV-----PVGMIDSLGVLTEKFG--------R----R 146 (277)
Q Consensus 87 ~ev~~~l~~~l~--~~~lv~hn-~~~fD~~~L~~~~~~~g~~~p~-----~~~~iDt~~l~~~~~~--------~----~ 146 (277)
.+++.+|.+|++ +.++|||| + .||+.+|+.+|.++|++... ...++|++.++...+. | +
T Consensus 82 ~evl~~f~~~l~~~~~~lVaHNs~-~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~ 160 (482)
T 2qxf_A 82 AAFAARIHSLFTVPKTCILGYNNV-RFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG 160 (482)
T ss_dssp HHHHHHHHHHHTSTTEEEEESSTT-TTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTS
T ss_pred HHHHHHHHHHHcCCCCEEEEECCH-HHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccC
Confidence 999999999998 88999999 8 99999999999999886321 1458899988765442 2 3
Q ss_pred CCCCCHHHHHHHhCCC-CCCCChHHHHHHHHHHHHHHHHh
Q 023805 147 AGNMKMATLASYFGLG-QQKHRSLDDVRMNLEVLKHCATV 185 (277)
Q Consensus 147 ~~~~~L~~La~~~gi~-~~~H~Al~DA~~t~~l~~~l~~~ 185 (277)
..+++|+.|+++||++ ..+|+|++||++|++|++++.++
T Consensus 161 ~~s~kL~~L~~~~Gi~~~~aHrAL~DA~aTa~l~~~l~~~ 200 (482)
T 2qxf_A 161 LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTR 200 (482)
T ss_dssp SBCCCHHHHHHHTTCCCC---CTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4579999999999998 67899999999999999998764
No 18
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=99.23 E-value=1.8e-10 Score=112.64 Aligned_cols=144 Identities=16% Similarity=0.150 Sum_probs=107.6
Q ss_pred CcEEEEEeccCCCCCCCCCCceEEEEEEEEECCeeeeeceEEEeecCCCCCCCCchhhhhcCCCHHHHhCCCCHHHHHHH
Q 023805 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADK 92 (277)
Q Consensus 13 ~~~v~~D~ETTg~~~~~~~~~IieIg~v~v~~~~~~~~~sf~~~v~P~~~~~i~~~~~~~~GIt~e~l~~a~~f~ev~~~ 92 (277)
..+++||+||||+++ ..++|++|+++. .++.. .||.+.. . +++ +.+..++.+++..
T Consensus 26 ~~~va~DtEttgl~~--~~~~iv~I~~~~-~~g~~-------~yip~~~--~---------~~~---~~~~l~~~~vl~~ 81 (605)
T 2kfn_A 26 APVFAFDTETDSLDN--ISANLVGLSFAI-EPGVA-------AYIPVAH--D---------YLD---APDQISRERALEL 81 (605)
T ss_dssp SSSEEEEEEESCSCT--TTCCEEEEEEEE-ETTEE-------EEEECCC--C---------STT---CCCCCCHHHHHHH
T ss_pred CCeEEEEEecCCCCc--ccCceEEEEEEE-cCCcE-------EEEeccc--c---------ccc---cccccCHHHHHHH
Confidence 367999999999987 567899999874 34321 3442221 0 011 1234567889999
Q ss_pred HHHHhCCC--EEEEeCCchhHHHHHHHHHHHhCCCCCCCCceeehHHHHHHHhCCCCCCCCHHHHHHHh-CCCCC-----
Q 023805 93 IFSILNGR--VWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYF-GLGQQ----- 164 (277)
Q Consensus 93 l~~~l~~~--~lv~hn~~~fD~~~L~~~~~~~g~~~p~~~~~iDt~~l~~~~~~~~~~~~~L~~La~~~-gi~~~----- 164 (277)
|..|+.+. ++|+||+ +||+.+|.. +|+..+. .++||+ ++.++++|...+++|+.|++.| |+...
T Consensus 82 L~~~L~d~~i~kV~hna-k~D~~~L~~----~Gi~l~~--~~~DT~-laayLL~p~~~~~~L~~La~~~Lg~~~i~~~~~ 153 (605)
T 2kfn_A 82 LKPLLEDEKALKVGQNL-KYDRGILAN----YGIELRG--IAFDTM-LESYILNSVAGRHDMDSLAERWLKHKTITFEEI 153 (605)
T ss_dssp HHHHHTCTTSCEEESSH-HHHHHHHHT----TTCCCCC--EEEEHH-HHHHHHCTTSSCCSHHHHHHHHSCCCCCCHHHH
T ss_pred HHHHHcCCCCeEEEECc-HHHHHHHHH----CCCCCCC--ccccHH-HHHHHhCCCCCCCCHHHHHHHhcCCCcccHHHH
Confidence 99999875 8999999 999998874 6776653 389999 7889999877789999999988 76410
Q ss_pred ------------------CCChHHHHHHHHHHHHHHHHhhhc
Q 023805 165 ------------------KHRSLDDVRMNLEVLKHCATVLFL 188 (277)
Q Consensus 165 ------------------~H~Al~DA~~t~~l~~~l~~~l~~ 188 (277)
.|.|..||..+++|+..+..++..
T Consensus 154 ~gKg~~~~~~~~~~le~~~~yAa~Da~~~~~L~~~L~~~L~~ 195 (605)
T 2kfn_A 154 AGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 195 (605)
T ss_dssp HCSSTTCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hCCCcccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 145889999999999999877644
No 19
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=99.03 E-value=1.3e-09 Score=90.82 Aligned_cols=157 Identities=12% Similarity=0.080 Sum_probs=92.8
Q ss_pred CCCCCCcEEEEEeccCCCCCCCCCCceEEEEEEEEECCeeeeeceEEEeecCCCCCCCCchhhh--hcCCCHHHHhCCCC
Q 023805 8 QAAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSR--CDGITREAVESAPE 85 (277)
Q Consensus 8 ~~~~~~~~v~~D~ETTg~~~~~~~~~IieIg~v~v~~~~~~~~~sf~~~v~P~~~~~i~~~~~~--~~GIt~e~l~~a~~ 85 (277)
++.....-+|+|+|+|+.. ...++|+||+|.-++ ..|+..+..-....++++..+ +..+.........+
T Consensus 17 ~~p~~m~r~FlDTEFt~d~---~~~eLISIGlV~EdG------rEFYav~~d~d~~~~~~wVr~~Vlp~L~~~~~~~~~s 87 (190)
T 4hec_A 17 QGPGSMVRYFYDTEFIEDG---HTIELISIGVVAEDG------REYYAVSTEFDPERAGSWVRTHVLPKLPPPASQLWRS 87 (190)
T ss_dssp ----CEEEEEEEEEEEECS---SCEEEEEEEEEETTS------CEEEEEETTSCGGGCCHHHHHHTGGGSCCTTSTTEEC
T ss_pred cCCCceeEEEEeeeecCCC---CCCCEEEEEEEcCCC------CEEEEEecCCChhhCcHHHHhccccCCCCCcccccCC
Confidence 3444456799999999743 356899999975332 347666543222246676665 45665433334458
Q ss_pred HHHHHHHHHHHhCCC-----EEEEeCCchhHHHHHHHHHHHh-CCCCCCCCceeehHHHHHHHhCCCCCCCCHHHHHHHh
Q 023805 86 FEEVADKIFSILNGR-----VWAGHNIRRFDCARIKEAFAEI-GKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYF 159 (277)
Q Consensus 86 f~ev~~~l~~~l~~~-----~lv~hn~~~fD~~~L~~~~~~~-g~~~p~~~~~iDt~~l~~~~~~~~~~~~~L~~La~~~ 159 (277)
+.++..+|.+||... .+++++. .||..+|.+.+... .++...+....|...+....-.+.+.
T Consensus 88 ~~~i~~~L~~FL~~~~~~~~eLwa~~~-~yD~~~L~ql~g~m~~lP~~~p~~~~dlr~~~~~~g~~~lp----------- 155 (190)
T 4hec_A 88 RQQIRLDLEEFLRIDGTDSIELWAWVG-AYDHVALCQLWGPMTALPPTVPRFTRELRQLWEDRGCPRMP----------- 155 (190)
T ss_dssp HHHHHHHHHHHTTTTSSCEEEEEESSC-HHHHHHHHTTTSSGGGSCTTSCSSCEEHHHHHHHTTCCCCC-----------
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEecc-cccHHHHHHHhcccccCCcccchhhHHHHHHHHHcCCCCCC-----------
Confidence 999999999999542 5888888 99999887654221 12222222234554433211111110
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHh
Q 023805 160 GLGQQKHRSLDDVRMNLEVLKHCATV 185 (277)
Q Consensus 160 gi~~~~H~Al~DA~~t~~l~~~l~~~ 185 (277)
..+..+|+||.||+.++..++.|...
T Consensus 156 ~~~~~~H~AL~DAR~n~~~~~~~~~~ 181 (190)
T 4hec_A 156 PRPRDVHDALVDARDQLRRFRLITST 181 (190)
T ss_dssp C-----CCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcCcHHHHHHHHHHHHHHhCc
Confidence 11245799999999999999988653
No 20
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=98.92 E-value=2.3e-09 Score=106.40 Aligned_cols=141 Identities=16% Similarity=0.112 Sum_probs=95.7
Q ss_pred EEEEEeccCCCCCCCCCCceEEEEEEEEECCeeeeeceEEEeecCCCCCCCCchhhhhcCCCHHHHhCCCCHHHHHHHHH
Q 023805 15 IVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKIF 94 (277)
Q Consensus 15 ~v~~D~ETTg~~~~~~~~~IieIg~v~v~~~~~~~~~sf~~~v~P~~~~~i~~~~~~~~GIt~e~l~~a~~f~ev~~~l~ 94 (277)
+|+||+||||+++ ..++|..|.+.....+. . ..+.|.. .++++..|.
T Consensus 1 ~vv~D~ETtGl~~--~~d~i~~iqi~~~~~~~-----~--~~~~p~~------------------------i~~~l~~L~ 47 (698)
T 1x9m_A 1 MIVSDIEANALLE--SVTKFHCGVIYDYSTAE-----Y--VSYRPSD------------------------FGAYLDALE 47 (698)
T ss_dssp CEEEEEEESSCGG--GCCCEEEEEEEETTTTE-----E--EEECGGG------------------------HHHHHHHHH
T ss_pred CEEEEcCCCCcCC--CCCEEEEEEEEecCCCc-----E--EEEChHH------------------------HHHHHHHHH
Confidence 5899999999987 55666555443211111 1 2233321 134667777
Q ss_pred HHh-CCCEEEEeCCchhHHHHHHHHHHH---hCCCCCCCCceeehHHHHHHHhCCCCCCCCHHHHHHHh--------CC-
Q 023805 95 SIL-NGRVWAGHNIRRFDCARIKEAFAE---IGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYF--------GL- 161 (277)
Q Consensus 95 ~~l-~~~~lv~hn~~~fD~~~L~~~~~~---~g~~~p~~~~~iDt~~l~~~~~~~~~~~~~L~~La~~~--------gi- 161 (277)
.|+ .+.++|+||+.+||+.+|...+.+ .|+..+. ..++||+ ++.+++++...+++|+.|++.| |.
T Consensus 48 ~~l~~~~~kV~HNa~kfD~~~L~~~~~~~~~~Gi~l~~-~~~~DTm-laayLL~p~~~~~~L~~La~~~L~~sL~~~g~~ 125 (698)
T 1x9m_A 48 AEVARGGLIVFHNGHKYDVPALTKLAKLQLNREFHLPR-ENCIDTL-VLSRLIHSNLKDTDMGLLRSGKLPGALEAWGYR 125 (698)
T ss_dssp HHHHTTCCEEESSTTTTHHHHHHHHHHHHHCCCCCCCG-GGEEEHH-HHHHHHTTTSCCCTTTTSCGGGSCSCCCHHHHH
T ss_pred HHHhcCCeEEEcCChHHHHHHHHHhhhhcccCCccCCC-CcchhHH-HHHHHhCCCCCCCCHHHHHHHHcccchhhhccc
Confidence 777 467899999559999999876543 2665541 2489999 7889999877678888777765 21
Q ss_pred ------C-------------C--C------------CCChHHHHHHHHHHHHHHHHhhhccc
Q 023805 162 ------G-------------Q--Q------------KHRSLDDVRMNLEVLKHCATVLFLES 190 (277)
Q Consensus 162 ------~-------------~--~------------~H~Al~DA~~t~~l~~~l~~~l~~~~ 190 (277)
+ . . .|.|..||..+++|+..+..++..++
T Consensus 126 lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~~~~~~~~~YA~~Da~~t~~L~~~L~~~L~~~~ 187 (698)
T 1x9m_A 126 LGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSDKHYFP 187 (698)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCTTGGGTSCCHHHHHHHHHHHHHHHHHHHHHHTCTTTSC
T ss_pred ccccccCHHHHhCcccccccccccccCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 0 1 35688999999999999988775544
No 21
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=98.73 E-value=7.7e-07 Score=78.70 Aligned_cols=175 Identities=14% Similarity=0.150 Sum_probs=117.4
Q ss_pred CCcEEEEEeccCCCCC--CC-----------------CCCceEEEEEEEEECCeee----eeceEEEeecCCCCCCCCch
Q 023805 12 TAEIVFFDLETTVPRR--AG-----------------QRFWVLEFGAIIVCPRKLV----ELESFSTLIKPKDLSAVALK 68 (277)
Q Consensus 12 ~~~~v~~D~ETTg~~~--~~-----------------~~~~IieIg~v~v~~~~~~----~~~sf~~~v~P~~~~~i~~~ 68 (277)
...||++|+|.+|+.. .+ +.-.|||+|+...+.++.. ..-.|+..+.+... ...+.
T Consensus 33 ~~~fVAiDtEFpGvv~rp~~~~~~t~d~~Y~~lr~nvd~l~iIQlGLt~f~~~g~~p~~~~~wqFNF~f~~~~d-~~~~~ 111 (285)
T 4gmj_B 33 KYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTED-MYAQD 111 (285)
T ss_dssp HCCEEEEEEECCCCCCCCTTCCTTSTTHHHHHHHHHHTTSCCCEEEEEEECTTSCCCSSCCEEEEEBCCCTTTS-CCCHH
T ss_pred cCCEEEEEEEecCccCCCCCccCCCHHHHHHHHHHHHHhhcceeEEEEeeccCCCcCCCeeEEEEEEEeccccc-cccHH
Confidence 3469999999999642 11 1125999999998865432 12345555555542 34444
Q ss_pred hhhh---cCCCHHHH-hCCCCHHHHHHHHHHHh----CCCEEEEeCCchhHHHHHHHHHHHhCCCCC-----------CC
Q 023805 69 SSRC---DGITREAV-ESAPEFEEVADKIFSIL----NGRVWAGHNIRRFDCARIKEAFAEIGKPAP-----------VP 129 (277)
Q Consensus 69 ~~~~---~GIt~e~l-~~a~~f~ev~~~l~~~l----~~~~lv~hn~~~fD~~~L~~~~~~~g~~~p-----------~~ 129 (277)
..++ +||.-+.. ..+.+..+..+.|.... .+..||+|+. .||+.+|.+.+-...++.. ++
T Consensus 112 SI~fL~~~G~DF~k~~~~GI~~~~f~ell~~sglvl~~~v~WvtfH~-~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP 190 (285)
T 4gmj_B 112 SIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHS-GYDFGYLIKILTNSNLPEEELDFFEILRLFFP 190 (285)
T ss_dssp HHHHHHHHTCCHHHHHHHCBCHHHHHHHHHTSSSSSCTTCEEEESSC-HHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCS
T ss_pred HHHHHHHcCCCHHHHHHcCCCHHHHHHHHHHhHHHhcCCCceEEecc-hhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCc
Confidence 4443 68876554 45566666555554321 3468999999 9999999888754444321 23
Q ss_pred CceeehHHHHHHHhCCCCCCCCHHHHHHHhCCC--CCCCChHHHHHHHHHHHHHHHHhhhcccCCC
Q 023805 130 VGMIDSLGVLTEKFGRRAGNMKMATLASYFGLG--QQKHRSLDDVRMNLEVLKHCATVLFLESSLP 193 (277)
Q Consensus 130 ~~~iDt~~l~~~~~~~~~~~~~L~~La~~~gi~--~~~H~Al~DA~~t~~l~~~l~~~l~~~~~l~ 193 (277)
.++|+.-++. .. ... ..+|+.+|+.++++ +..|.|-.|+..|+.++.+|.+.++. +.++
T Consensus 191 -~vYD~K~l~~-~~-~~l-~ggL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~~f~-~~~~ 251 (285)
T 4gmj_B 191 -VIYDVKYLMK-SC-KNL-KGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFE-DHID 251 (285)
T ss_dssp -CEEEHHHHGG-GS-TTC-CSCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHHHT-TCCC
T ss_pred -hhhhHHHHHH-hc-ccc-CChHHHHHHhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhc-CCcc
Confidence 3788885543 22 222 35899999999998 67899999999999999999887764 4443
No 22
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=98.52 E-value=2.2e-07 Score=89.35 Aligned_cols=118 Identities=12% Similarity=0.044 Sum_probs=92.3
Q ss_pred cEEEEEeccCCCCCCCCCCceEEEEEEEEECCeeeeeceEEEeecCCCCCCCCchhhhhcCCCHHHHhCCCCHHHHHHHH
Q 023805 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKI 93 (277)
Q Consensus 14 ~~v~~D~ETTg~~~~~~~~~IieIg~v~v~~~~~~~~~sf~~~v~P~~~~~i~~~~~~~~GIt~e~l~~a~~f~ev~~~l 93 (277)
+.+++|+|+.+.++ ...+++-|++. .++. .| ++. +++..|
T Consensus 11 ~~valDtE~~~~~~--~~a~Lvgi~la--~~~~-----a~--~i~-----------------------------~~l~~l 50 (540)
T 4dfk_A 11 EGAFVGFVLSRKEP--MWADLLALAAA--RGGR-----VH--RAP-----------------------------EPYKAL 50 (540)
T ss_dssp TTCEEEEEESSSCT--TTCCEEEEEEE--ETTE-----EE--ECS-----------------------------SHHHHH
T ss_pred CceEEEEEecCCcc--CcccEEEEEEE--cCCE-----EE--Eeh-----------------------------hhHHHH
Confidence 56899999999987 66777777665 2331 12 110 255778
Q ss_pred HHHhCCCEEEEeCCchhHHHHHHHHHHHhCCCCCCCCceeehHHHHHHHhCCCCCCCCHHHHHHHhCCCCCCCChHHHHH
Q 023805 94 FSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVR 173 (277)
Q Consensus 94 ~~~l~~~~lv~hn~~~fD~~~L~~~~~~~g~~~p~~~~~iDt~~l~~~~~~~~~~~~~L~~La~~~gi~~~~H~Al~DA~ 173 (277)
..|+.+..+|+||+ +||+. ++|+... ..+||+ ++.++++|. +++|++|+++|... -.|.+..||.
T Consensus 51 ~~~l~d~~kV~hn~-K~Dl~-------~~Gi~~~---~~fDT~-laAyLL~p~--~~~L~~La~~yl~~-~gk~a~~DA~ 115 (540)
T 4dfk_A 51 RDLKEARGLLAKDL-SVLAL-------REGLGLP---PGDDPM-LLAYLLDPS--NTTPEGVARRYGGE-WTEEAGERAA 115 (540)
T ss_dssp TTCSSBCSTTHHHH-HHHHH-------HTTCCCC---BCCCHH-HHHHHHCTT--CCCHHHHHHHHTSC-CCSCHHHHHH
T ss_pred HHHHcCCCEEEecc-HHHHH-------HcCCCCC---cceeHH-HHHHHhCCC--CCCHHHHHHHHhhh-hccchHHHHH
Confidence 88998877899999 99997 5788765 389999 788999998 79999999988643 3477899999
Q ss_pred HHHHHHHHHHHhh
Q 023805 174 MNLEVLKHCATVL 186 (277)
Q Consensus 174 ~t~~l~~~l~~~l 186 (277)
.+++|+..+..++
T Consensus 116 ~t~~L~~~L~~~L 128 (540)
T 4dfk_A 116 LSERLFANLWGRL 128 (540)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998877
No 23
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=98.37 E-value=7.1e-06 Score=82.22 Aligned_cols=146 Identities=16% Similarity=0.155 Sum_probs=98.7
Q ss_pred CCcEEEEEeccCC---CCCCCCCCceEEEEEEEEECCeeeeeceEEEeecCCCCCCCCchhhhhcCCCHHHHhCCCCHHH
Q 023805 12 TAEIVFFDLETTV---PRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEE 88 (277)
Q Consensus 12 ~~~~v~~D~ETTg---~~~~~~~~~IieIg~v~v~~~~~~~~~sf~~~v~P~~~~~i~~~~~~~~GIt~e~l~~a~~f~e 88 (277)
+-.+++||+||++ +++ ..+.|+.||++..+ ... .+ . .++-. .+.+...++..+
T Consensus 134 ~l~ilsfDIEt~~~~~p~~--~~d~Ii~Is~~~~~--~~~---~~-t-~~~i~---------------~~~v~~~~~E~~ 189 (775)
T 1qht_A 134 ELTMLAFAIATLYHEGEEF--GTGPILMISYADGS--EAR---VI-T-WKKID---------------LPYVDVVSTEKE 189 (775)
T ss_dssp CCCEEEEEEEECCCTTCCT--TCSCEEEEEEECSS--CEE---EE-E-SSCCC---------------CSSEEECSCHHH
T ss_pred CcEEEEEEEEEcCCCCCCC--CCCcEEEEEEEecC--CCe---eE-e-ecccc---------------ccceEEcCCHHH
Confidence 5589999999998 443 56789999875222 111 11 1 11111 011222345578
Q ss_pred HHHHHHHHhCC---CEEEEeCCchhHHHHHHHHHHHhCCCCCC---------------------CCceeehHHHHHHHhC
Q 023805 89 VADKIFSILNG---RVWAGHNIRRFDCARIKEAFAEIGKPAPV---------------------PVGMIDSLGVLTEKFG 144 (277)
Q Consensus 89 v~~~l~~~l~~---~~lv~hn~~~fD~~~L~~~~~~~g~~~p~---------------------~~~~iDt~~l~~~~~~ 144 (277)
.+..|.+++.. .+++|||+..||+++|..-+..+|++... ....+|++.++...+
T Consensus 190 LL~~f~~~i~~~dPDiivGyN~~~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~- 268 (775)
T 1qht_A 190 MIKRFLRVVREKDPDVLITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTI- 268 (775)
T ss_dssp HHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHS-
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHhc-
Confidence 99999999853 58999999999999999999888887542 123679998876643
Q ss_pred CCCCCCCHHHHHH-HhCCCCCC--------------------CChHHHHHHHHHHHHHHH
Q 023805 145 RRAGNMKMATLAS-YFGLGQQK--------------------HRSLDDVRMNLEVLKHCA 183 (277)
Q Consensus 145 ~~~~~~~L~~La~-~~gi~~~~--------------------H~Al~DA~~t~~l~~~l~ 183 (277)
...+++|+++|+ .+|..... +-.+.||..+..|+.+++
T Consensus 269 -~l~sysL~~Va~~~Lg~~K~dv~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~ 327 (775)
T 1qht_A 269 -NLPTYTLEAVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFF 327 (775)
T ss_dssp -CCSCCCHHHHHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CcCcCCHHHHHHHHhCCCCCccCHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 466899999998 67876211 112568888888876654
No 24
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=98.26 E-value=3.9e-05 Score=68.76 Aligned_cols=172 Identities=15% Similarity=0.174 Sum_probs=115.8
Q ss_pred CCCCcEEEEEeccCCCCCC--C-----------------CCCceEEEEEEEEECCeee----eeceEEEeecCCCCCCCC
Q 023805 10 AGTAEIVFFDLETTVPRRA--G-----------------QRFWVLEFGAIIVCPRKLV----ELESFSTLIKPKDLSAVA 66 (277)
Q Consensus 10 ~~~~~~v~~D~ETTg~~~~--~-----------------~~~~IieIg~v~v~~~~~~----~~~sf~~~v~P~~~~~i~ 66 (277)
.....||++|+|.+|+... | +.-.|||+|+...+.++.. ..-.|+......+ ....
T Consensus 42 i~~~~fVAmDtEFpGvv~rp~g~f~~~~e~~Yq~lR~NVd~l~iIQlGLt~fd~~G~~p~~~~twqFNF~F~~~~-d~~~ 120 (333)
T 2p51_A 42 IERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPVEACTWQFNFTFNLQD-DMYA 120 (333)
T ss_dssp TTTSCEEEEEEECCCCCCCCCSCCSSSHHHHHHHHHHHHHHSCCCEEEEEEECTTSCCCTTCSEEEEEBCCCTTT-SCCC
T ss_pred HhhCCEEEEeeeccccccccccccCCCHHHHHHHHHHhhhhccceEEEEEEEccCCCCCCCceeEEEEEEECCcc-cccC
Confidence 4567899999999997521 1 1136999999999865532 1234555543332 1333
Q ss_pred chhhh---hcCCCHHHH-hCCCCHHHHHHHHHH--Hh--CCCEEEEeCCchhHHHHHHHHHHHhCCCCC-----------
Q 023805 67 LKSSR---CDGITREAV-ESAPEFEEVADKIFS--IL--NGRVWAGHNIRRFDCARIKEAFAEIGKPAP----------- 127 (277)
Q Consensus 67 ~~~~~---~~GIt~e~l-~~a~~f~ev~~~l~~--~l--~~~~lv~hn~~~fD~~~L~~~~~~~g~~~p----------- 127 (277)
+...+ -+||.=+.. +.+.++.+..+.+.. ++ ++-.||.++. .||+.+|.+.+- +.++|
T Consensus 121 ~~SI~fL~~~G~DF~k~~~~GI~~~~F~elL~~SGLvl~~~V~Witfhg-~YDfgyLlK~Lt--~~~LP~~~~eF~~~l~ 197 (333)
T 2p51_A 121 PESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHS-GYDFAYLLKAMT--QIPLPAEYEEFYKILC 197 (333)
T ss_dssp HHHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTTTSSSCTTCEEEESSC-HHHHHHHHHHHH--CSCCCSSHHHHHHHHH
T ss_pred HHHHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCcccCCCceEEEecc-chhHHHHHHHhc--CCCCCCCHHHHHHHHH
Confidence 33333 358876554 456676665555443 22 2358999998 999999888775 33444
Q ss_pred --CCCceeehHHHHHHHhCCCCCCCCHHHHHHHhCCC--CCCCChHHHHHHHHHHHHHHHHhhhcc
Q 023805 128 --VPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLG--QQKHRSLDDVRMNLEVLKHCATVLFLE 189 (277)
Q Consensus 128 --~~~~~iDt~~l~~~~~~~~~~~~~L~~La~~~gi~--~~~H~Al~DA~~t~~l~~~l~~~l~~~ 189 (277)
++ .++|++-++.. .. .+ .-+|+.+|+.+|++ +..|.|-.|+..|..++.+|.+.++..
T Consensus 198 ~~FP-~iYD~K~l~~~-~~-~l-~ggL~~lA~~L~v~Rig~~HqAGsDSlLT~~~F~kl~~~~f~~ 259 (333)
T 2p51_A 198 IYFP-KNYDIKYIMKS-VL-NN-SKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSRYFDG 259 (333)
T ss_dssp HHSS-SEEEHHHHHTT-TT-CC-CCCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCc-chhhHHHHHHH-hc-cc-cCCHHHHHHHcCCCccCcchhhhhHHHHHHHHHHHHHHHhcCC
Confidence 22 47888855433 22 22 36899999999998 788999999999999999999987643
No 25
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=98.25 E-value=2.2e-05 Score=72.47 Aligned_cols=166 Identities=14% Similarity=0.104 Sum_probs=99.3
Q ss_pred CCcEEEEEeccCC-CCCCC--CCCceEEEEEEEEECCeeeeeceEEEeecCCCCCCCCchhh---------hhcCCCHHH
Q 023805 12 TAEIVFFDLETTV-PRRAG--QRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSS---------RCDGITREA 79 (277)
Q Consensus 12 ~~~~v~~D~ETTg-~~~~~--~~~~IieIg~v~v~~~~~~~~~sf~~~v~P~~~~~i~~~~~---------~~~GIt~e~ 79 (277)
+-.+++||+||++ ..|.. ..+.|+.|+++....+.. ..| .+++.+.+.. .++.. .+..-....
T Consensus 105 ~l~vlsfDIEt~~~~fP~~~~~~d~Ii~Is~~~~~~~~~---~~~-~l~~~~~~~~-~~~~~~~~~~~~~f~~~~~~~~~ 179 (388)
T 1noy_A 105 FVRVANCDIEVTGDKFPDPMKAEYEIDAITHYDSIDDRF---YVF-DLLNSMYGSV-SKWDAKLAAKLDCEGGDEVPQEI 179 (388)
T ss_dssp GCCEEEEEEEECCSSCCCTTTCCSCEEEEEEEETTTTEE---EEE-EECCCSSCCC-CCCCHHHHHSCGGGTCCCCCHHH
T ss_pred CeEEEEEEEEeCCCCCCCCCCCCCeEEEEEEEEecCCeE---EEE-EEeeccCCCC-Ccccccccccccccccccccccc
Confidence 3479999999997 11211 235899999854433321 012 1244332111 11110 011111111
Q ss_pred ---H--hCCCCHHHHHHHHHHHhCC---CEEEEeCCchhHHHHHHHHHHH-hCCC-------CC----------C-----
Q 023805 80 ---V--ESAPEFEEVADKIFSILNG---RVWAGHNIRRFDCARIKEAFAE-IGKP-------AP----------V----- 128 (277)
Q Consensus 80 ---l--~~a~~f~ev~~~l~~~l~~---~~lv~hn~~~fD~~~L~~~~~~-~g~~-------~p----------~----- 128 (277)
+ ....+-.+.+..|.+++.. .+++|||+..||+++|..-+.. +|+. .. +
T Consensus 180 ~~~v~v~~~~~E~~LL~~f~~~i~~~dPDii~GyN~~~FDlpyL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~~~~g~~~~ 259 (388)
T 1noy_A 180 LDRVIYMPFDNERDMLMEYINLWEQKRPAIFTGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKEI 259 (388)
T ss_dssp HTTEEEEEESCHHHHHHHHHHHHHHSCCSEEECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGCSCEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHHhCCcEEEecCCCCccHHHHHHHHHHHcCCccccccCcccccccccChhhhCCcce
Confidence 1 1234567899999999943 5999999999999998877766 5521 00 0
Q ss_pred ---CC-ceeehHHHHHHHhCCCCCCCCHHHHHH-HhCCCCCCC-C----------------hHHHHHHHHHHHHHH
Q 023805 129 ---PV-GMIDSLGVLTEKFGRRAGNMKMATLAS-YFGLGQQKH-R----------------SLDDVRMNLEVLKHC 182 (277)
Q Consensus 129 ---~~-~~iDt~~l~~~~~~~~~~~~~L~~La~-~~gi~~~~H-~----------------Al~DA~~t~~l~~~l 182 (277)
.. ..+|++.++...-.....+++|+++|+ .+|.....| . .+.||..+++|+.++
T Consensus 260 ~~i~GR~~lD~~~~~k~~~~~~l~sysL~~Va~~~Lg~~K~d~~~~i~~~~~~~~~~l~~Y~~~D~~l~~~L~~kl 335 (388)
T 1noy_A 260 YSIDGVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKLPYDGPINKLRETNHQRYISYNIIDVESVQAIDKIR 335 (388)
T ss_dssp EEETTSEECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCCCCCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCeEEeEHHHHHhhcCcCcccCCCHHHHHHHHhCCCCCCcHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 178999877653233377999999998 677764444 2 367999999988874
No 26
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=98.23 E-value=4.4e-05 Score=66.26 Aligned_cols=171 Identities=15% Similarity=0.184 Sum_probs=113.2
Q ss_pred CCcEEEEEeccCCCCCC--C-----------------CCCceEEEEEEEEECCeeee----eceEEEeecCCCCCCCCch
Q 023805 12 TAEIVFFDLETTVPRRA--G-----------------QRFWVLEFGAIIVCPRKLVE----LESFSTLIKPKDLSAVALK 68 (277)
Q Consensus 12 ~~~~v~~D~ETTg~~~~--~-----------------~~~~IieIg~v~v~~~~~~~----~~sf~~~v~P~~~~~i~~~ 68 (277)
...||++|+|.+|.... | +.-.|||+|+...+.++... .-.|+....... ....+.
T Consensus 23 ~~~fvAmDtEFpGvv~rp~g~f~~~~~~~Y~~lr~nVd~l~iIQlGlt~~~~~g~~p~~~~~wqFNF~F~~~~-d~~~~~ 101 (252)
T 2d5r_A 23 KYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTE-DMYAQD 101 (252)
T ss_dssp HCCEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEECTTSCCCSSCCEEEEEBCCCTTT-SCCCHH
T ss_pred hCCEEEEEeeecceecccCCCCCCCHHHHHHHHHHhhhhcceeEEEEEEEccCCCCCCCceeEEEEEEECCcc-cccCHH
Confidence 35799999999997421 1 11469999999998654321 233444433332 133333
Q ss_pred hhh---hcCCCHHHH-hCCCCHHHHHHHHHH---Hh-CCCEEEEeCCchhHHHHHHHHHHHhCCCCC-----------CC
Q 023805 69 SSR---CDGITREAV-ESAPEFEEVADKIFS---IL-NGRVWAGHNIRRFDCARIKEAFAEIGKPAP-----------VP 129 (277)
Q Consensus 69 ~~~---~~GIt~e~l-~~a~~f~ev~~~l~~---~l-~~~~lv~hn~~~fD~~~L~~~~~~~g~~~p-----------~~ 129 (277)
+.+ -+||.=+.. +.+.++.+..+.+.. .+ .+-.||.++. .||+.+|.+.+-...++.. ++
T Consensus 102 Si~fL~~~G~DF~k~~~~GI~~~~F~ell~~sglvl~~~v~Witfhg-~yDf~yL~k~L~~~~LP~~~~~F~~~l~~~FP 180 (252)
T 2d5r_A 102 SIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHS-GYDFGYLIKILTNSNLPEEELDFFEILRLFFP 180 (252)
T ss_dssp HHHHHHHHTCCHHHHHHHCBCHHHHHHHHHTTTSSSSSSCEEEESSC-HHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCS
T ss_pred HHHHHHHcCCChhHHHhcCCCHHHHHHHHHhcCcccCCCceEEEecC-cchHHHHHHHhcCCCCCCCHHHHHHHHHHHCc
Confidence 333 357775554 455666665555433 11 2348999998 9999998887754333311 23
Q ss_pred CceeehHHHHHHHhCCCCCCCCHHHHHHHhCCC--CCCCChHHHHHHHHHHHHHHHHhhhc
Q 023805 130 VGMIDSLGVLTEKFGRRAGNMKMATLASYFGLG--QQKHRSLDDVRMNLEVLKHCATVLFL 188 (277)
Q Consensus 130 ~~~iDt~~l~~~~~~~~~~~~~L~~La~~~gi~--~~~H~Al~DA~~t~~l~~~l~~~l~~ 188 (277)
.++|+.-++.. . .+. ..+|+.+|+.+|++ +..|.|-.|+..|..++.+|.+.++.
T Consensus 181 -~iyD~K~l~~~-~-~~l-~~gL~~la~~L~v~r~g~~HqAGsDsllT~~~F~km~~~~f~ 237 (252)
T 2d5r_A 181 -VIYDVKYLMKS-C-KNL-KGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFE 237 (252)
T ss_dssp -CEEEHHHHGGG-C-TTC-CSSHHHHHHHHTCCCCSSTTSHHHHHHHHHHHHHHHHHHTSC
T ss_pred -chhhHHHHHHH-h-ccc-CCCHHHHHHHcCCCccCcccchhhhHHHHHHHHHHHHHHhcC
Confidence 48898855432 2 223 36799999999998 78899999999999999999988764
No 27
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=98.22 E-value=4.4e-06 Score=81.18 Aligned_cols=131 Identities=9% Similarity=0.002 Sum_probs=94.1
Q ss_pred cEEEEEeccCCCCCCCCCCceEEEEEEEEECCeeeeeceEEEeecCCCCCCCCchhhhhcCCCHHHHhCCCCHHHHHHHH
Q 023805 14 EIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADKI 93 (277)
Q Consensus 14 ~~v~~D~ETTg~~~~~~~~~IieIg~v~v~~~~~~~~~sf~~~v~P~~~~~i~~~~~~~~GIt~e~l~~a~~f~ev~~~l 93 (277)
.-.++|+|+++.++ ...+++-|++. .++. ..||.+.. .++...|
T Consensus 30 ~~~aldtE~~~~~~--~~a~Lvgisla--~~~~-------a~yIp~~~-------------------------~~~l~~L 73 (592)
T 3pv8_A 30 DKAALVVEVVEENY--HDAPIVGIAVV--NEHG-------RFFLRPET-------------------------ALADPQF 73 (592)
T ss_dssp SEEEEEEECCSSSC--TTCCCCEEEEE--ETTE-------EEEECHHH-------------------------HTTCHHH
T ss_pred cCcEEEEEEcCCcc--CcccEEEEEEE--cCCc-------eEEEccch-------------------------hhHHHHH
Confidence 45689999999987 66777777654 2221 13442110 1245678
Q ss_pred HHHhCC--CEEEEeCCchhHHHHHHHHHHHhCCCCCCCCceeehHHHHHHHhCCCCCCCCHHHHHHHh-CCCCC------
Q 023805 94 FSILNG--RVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYF-GLGQQ------ 164 (277)
Q Consensus 94 ~~~l~~--~~lv~hn~~~fD~~~L~~~~~~~g~~~p~~~~~iDt~~l~~~~~~~~~~~~~L~~La~~~-gi~~~------ 164 (277)
..||.+ ...|+||+ +||+.+|. ++|+..+.+ ++||+ ++.++++|...+++|++|++.| |....
T Consensus 74 k~lLed~~i~KV~hn~-K~Dl~vL~----~~Gi~l~g~--~fDTm-LAAYLL~p~~~~~~L~~La~~yLg~~l~~~ee~~ 145 (592)
T 3pv8_A 74 VAWLGDETKKKSMFDS-KRAAVALK----WKGIELCGV--SFDLL-LAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVY 145 (592)
T ss_dssp HHHHTCTTSEEEESSH-HHHHHHHH----HTTCCCCCE--EEEHH-HHHHHHCGGGCCCSHHHHHGGGTCCSSCCHHHHH
T ss_pred HHHHhCCCCeEEEech-HHHHHHHH----HcCCCCCCc--cchHH-HHHHHcCCCCCCCCHHHHHHHHcCCCCchHHHhc
Confidence 889965 48999999 99998875 578887543 89999 8999999987789999999965 44310
Q ss_pred --------------CCChHHHHHHHHHHHHHHHHhhhc
Q 023805 165 --------------KHRSLDDVRMNLEVLKHCATVLFL 188 (277)
Q Consensus 165 --------------~H~Al~DA~~t~~l~~~l~~~l~~ 188 (277)
.+.|..||..+.+|+..+..+|..
T Consensus 146 gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~~L~~~L~e 183 (592)
T 3pv8_A 146 GKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRR 183 (592)
T ss_dssp CSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 133577999999999998877654
No 28
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=98.15 E-value=3.6e-05 Score=78.34 Aligned_cols=157 Identities=13% Similarity=0.109 Sum_probs=100.2
Q ss_pred CCcEEEEEeccCCC---CCCCCCCceEEEEEEEEECCeeeeeceEEEeecCCCCCCCCchhhhhcCCCHHHHhCCCCHHH
Q 023805 12 TAEIVFFDLETTVP---RRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEE 88 (277)
Q Consensus 12 ~~~~v~~D~ETTg~---~~~~~~~~IieIg~v~v~~~~~~~~~sf~~~v~P~~~~~i~~~~~~~~GIt~e~l~~a~~f~e 88 (277)
+-.+++||+||.+. .|+...+.|+.|+++....+...........+.+.. .+ ....+....+..+
T Consensus 248 plrilSfDIEt~~~~g~fP~~~~D~Ii~IS~~v~~~g~~~~~~r~~f~l~~~~--~~----------~~~~V~~~~sE~e 315 (919)
T 3iay_A 248 PLRIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKPFIRNVFTLNTCS--PI----------TGSMIFSHATEEE 315 (919)
T ss_dssp CCEEEEEEEEECCCTTSCCCTTTCCEEEEEEEEEETTCSSCSEEEEEEESCCC--CB----------TTBEEEEESSHHH
T ss_pred CceEEEEEEEECCCCCCCCCCCCCcEEEEEEEEecCCCcccceeEEEEecCCC--CC----------CCCeEEECCCHHH
Confidence 34689999999752 333356899999988766543211000001111111 11 1112223345578
Q ss_pred HHHHHHHHhCC---CEEEEeCCchhHHHHHHHHHHHhCCCCCC------------------------------C---Cce
Q 023805 89 VADKIFSILNG---RVWAGHNIRRFDCARIKEAFAEIGKPAPV------------------------------P---VGM 132 (277)
Q Consensus 89 v~~~l~~~l~~---~~lv~hn~~~fD~~~L~~~~~~~g~~~p~------------------------------~---~~~ 132 (277)
++..|.+++.. .+++|||+..||+++|..-+..+|++... . -..
T Consensus 316 LL~~F~~~i~~~DPDIIvGyNi~~FDlpyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~~~g~~~~~~~~i~GR~~ 395 (919)
T 3iay_A 316 MLSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNIDGRLQ 395 (919)
T ss_dssp HHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCBCCTTCEE
T ss_pred HHHHHHHHHHHhCCCEEEecCCccCCHHHHHHHHHHcCCCchhhhccccCccccccccccccccccccccceeEEcCeEE
Confidence 99999999954 78999999999999999988888876310 0 036
Q ss_pred eehHHHHHHHhCCCCCCCCHHHHHHH-hCCCCC--CC---------C----------hHHHHHHHHHHHHHH
Q 023805 133 IDSLGVLTEKFGRRAGNMKMATLASY-FGLGQQ--KH---------R----------SLDDVRMNLEVLKHC 182 (277)
Q Consensus 133 iDt~~l~~~~~~~~~~~~~L~~La~~-~gi~~~--~H---------~----------Al~DA~~t~~l~~~l 182 (277)
+|++.++... ....+++|+++|++ +|.+.. .| . .+.||..+++|+.++
T Consensus 396 lDl~~~~k~~--~~l~sysL~~Va~~~Lg~~K~dv~~~~I~~l~~~~~~~~~~L~~Y~~~Da~l~~~L~~kl 465 (919)
T 3iay_A 396 LDLLQFIQRE--YKLRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEKL 465 (919)
T ss_dssp EEHHHHHHHH--CCCSCCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEhHHHHHhh--cCCCCCCHHHHHHHhcccCCCCCCHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999887654 35779999999885 465421 11 1 257888888888776
No 29
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=98.09 E-value=2.4e-05 Score=79.15 Aligned_cols=156 Identities=21% Similarity=0.226 Sum_probs=96.4
Q ss_pred CCcEEEEEecc-CC---CCCCCC--CCceEEEEEEEEECCeeeeeceEEEeecCCCCCCCCchhhhhcCCCHHHHhCCCC
Q 023805 12 TAEIVFFDLET-TV---PRRAGQ--RFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPE 85 (277)
Q Consensus 12 ~~~~v~~D~ET-Tg---~~~~~~--~~~IieIg~v~v~~~~~~~~~sf~~~v~P~~~~~i~~~~~~~~GIt~e~l~~a~~ 85 (277)
+-.+++||+|| ++ ..|+.. .+.|++||++ ..++. .-...+++.. .+.....+.| ..+....+
T Consensus 189 ~l~ilsfDIEt~s~~~g~fP~~~~~~d~Ii~Is~~--~~~g~----~~~~~~~~~~---~~~~~~~i~~---~~v~~~~~ 256 (847)
T 1s5j_A 189 KIKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALA--GSDGL----KKVLVLNRND---VNEGSVKLDG---ISVERFNT 256 (847)
T ss_dssp CCCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEE--ETTSC----EEEEEECSSC---CCCCCEEETT---EEEEEESS
T ss_pred CceEEEEEEEeCcCCCCCCCCccccCCcEEEEEEE--ccCCC----cEEEEEeCCc---ccccccCCCC---CeEEEeCC
Confidence 44789999999 74 223211 3689999985 33221 1123444432 1110111111 11222345
Q ss_pred HHHHHHHHHHHhCC-CEEEEeCCchhHHHHHHHHHHHhCCCC---CC-----------CCceeehHHHHHH------HhC
Q 023805 86 FEEVADKIFSILNG-RVWAGHNIRRFDCARIKEAFAEIGKPA---PV-----------PVGMIDSLGVLTE------KFG 144 (277)
Q Consensus 86 f~ev~~~l~~~l~~-~~lv~hn~~~fD~~~L~~~~~~~g~~~---p~-----------~~~~iDt~~l~~~------~~~ 144 (277)
..+++..|.+|+.+ .+++|||+..||+++|..-+..+|+.. |+ ....+|.+.++.. .+.
T Consensus 257 E~~LL~~f~~~i~~~diivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~~y~f~ 336 (847)
T 1s5j_A 257 EYELLGRFFDILLEYPIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFE 336 (847)
T ss_dssp HHHHHHHHHHHHTTCSEEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTST
T ss_pred HHHHHHHHHHHhccCCEEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhhhhccc
Confidence 67899999999965 589999999999999999999998852 21 1135787765532 122
Q ss_pred CCCCCCCHHHHHH-HhCCCCCC--------------CChHHHHHHHHHHH
Q 023805 145 RRAGNMKMATLAS-YFGLGQQK--------------HRSLDDVRMNLEVL 179 (277)
Q Consensus 145 ~~~~~~~L~~La~-~~gi~~~~--------------H~Al~DA~~t~~l~ 179 (277)
....+++|+++|+ .+|.+... +-.+.||..+..|+
T Consensus 337 ~kl~sysL~~Va~~~Lg~~K~dv~~~i~~~~~~~l~~Ycl~Da~lt~~L~ 386 (847)
T 1s5j_A 337 GKYNEYNLDAVAKALLGTSKVKVDTLISFLDVEKLIEYNFRDAEITLQLT 386 (847)
T ss_dssp TCCSSCSHHHHHHHHHCCCCC--SSCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccccHHHHHHHHhCCCCcchhHhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 3456899999999 66665211 11366999998885
No 30
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=98.04 E-value=0.00016 Score=63.77 Aligned_cols=173 Identities=14% Similarity=0.129 Sum_probs=111.6
Q ss_pred CCCCcEEEEEeccCCCCC--CC-----------------CCCceEEEEEEEEECCeee-----eeceEEEeecCCCCCCC
Q 023805 10 AGTAEIVFFDLETTVPRR--AG-----------------QRFWVLEFGAIIVCPRKLV-----ELESFSTLIKPKDLSAV 65 (277)
Q Consensus 10 ~~~~~~v~~D~ETTg~~~--~~-----------------~~~~IieIg~v~v~~~~~~-----~~~sf~~~v~P~~~~~i 65 (277)
.....||++|+|.+|... .+ +.-.|||+|+...+.++.. ..-.|+.+....+ ...
T Consensus 35 i~~~~fVAmDtEFpGvv~rp~g~f~~~~d~~Yq~lr~nVd~l~iIQlGLt~~~~~g~~p~~~~~~wqFNF~F~~~~-d~~ 113 (289)
T 1uoc_A 35 VSQYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSDANGNKPDNGPSTWQFNFEFDPKK-EIM 113 (289)
T ss_dssp TTTSCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEECTTCCCCSSSCSEEEEEBCCCTTC-CCC
T ss_pred HhhCCEEEEEeeecceeccCCcccCCCHHHHHHHHHHhhhhccceEEEEEEEccCCCcCCCCcceEEEEEEECCcc-ccc
Confidence 456789999999999742 11 2246999999999865432 1234555433332 123
Q ss_pred Cchhhh---hcCCCHHHH-hCCCCHHHHHHHHHH--Hh--CCCEEEEeCCchhHHHHHHHHHHHhCCCCC----------
Q 023805 66 ALKSSR---CDGITREAV-ESAPEFEEVADKIFS--IL--NGRVWAGHNIRRFDCARIKEAFAEIGKPAP---------- 127 (277)
Q Consensus 66 ~~~~~~---~~GIt~e~l-~~a~~f~ev~~~l~~--~l--~~~~lv~hn~~~fD~~~L~~~~~~~g~~~p---------- 127 (277)
.+.+.+ -+||.=+.. +.+.++.+..+.+.. ++ ++-.||.++. .||+.+|.+.+-. .++|
T Consensus 114 ~~~SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~sgLvl~~~v~Witfhg-~yDfgyL~k~Lt~--~~LP~~~~~F~~~l 190 (289)
T 1uoc_A 114 STESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHA-AYDLGFLINILMN--DSMPNNKEDFEWWV 190 (289)
T ss_dssp CHHHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTSSCSSCTTSEEEESST-THHHHHHHHHHTT--SCCCSSHHHHHHHH
T ss_pred cHHHHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCCccCCCceEEEccC-cchHHHHHHHhcc--ccCCcCHHHHHHHH
Confidence 333332 357775544 455566654444332 11 2358999998 9999998877753 3433
Q ss_pred ---CCCceeehHHHHHHHhCCC------------CCCCCHHHHHHHhCCC--CCCCChHHHHHHHHHHHHHHHHhhh
Q 023805 128 ---VPVGMIDSLGVLTEKFGRR------------AGNMKMATLASYFGLG--QQKHRSLDDVRMNLEVLKHCATVLF 187 (277)
Q Consensus 128 ---~~~~~iDt~~l~~~~~~~~------------~~~~~L~~La~~~gi~--~~~H~Al~DA~~t~~l~~~l~~~l~ 187 (277)
++ .++|+.-++....+-. ....+|+.+|+.+|++ +..|.|-.|+..|+.++.+|.+..+
T Consensus 191 ~~~FP-~iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~~~ 266 (289)
T 1uoc_A 191 HQYMP-NFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSIFTTTGGQSLLMLLSFCQLSKLSM 266 (289)
T ss_dssp HHHCS-SEEEHHHHHHHHTTTCC-------------CCSHHHHHHHTTCCCCGGGGSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhCc-cceeHHHHHHHHHhccCcccccccccccccCCCHHHHHHHcCCCccCcccccHHHHHHHHHHHHHHHHHHh
Confidence 22 4889996665432111 1235899999999998 6789999999999999999998765
No 31
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=98.01 E-value=6.4e-05 Score=70.18 Aligned_cols=134 Identities=13% Similarity=0.085 Sum_probs=89.4
Q ss_pred CcEEEEEeccCCCCCCCCCCceEEEEEEEEECCeeeeeceEEEeecCCCCCCCCchhhhhcCCCHHHHhCCCCHHHHHHH
Q 023805 13 AEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVADK 92 (277)
Q Consensus 13 ~~~v~~D~ETTg~~~~~~~~~IieIg~v~v~~~~~~~~~sf~~~v~P~~~~~i~~~~~~~~GIt~e~l~~a~~f~ev~~~ 92 (277)
...++||+|+++..+ ..+.++-|.+. .+.. ..+|.|.. + .+.+..
T Consensus 129 ~~~vavDtE~~~~~~--~~~~l~lIQLa---~~~~------~~lidpl~---l---------------------~~~l~~ 173 (428)
T 3saf_A 129 CQEFAVNLEHHSYRS--FLGLTCLMQIS---TRTE------DFIIDTLE---L---------------------RSDMYI 173 (428)
T ss_dssp CSEEEEEEEEECTTC--SSCEEEEEEEE---CSSC------EEEEETTT---T---------------------GGGGGG
T ss_pred CCeEEEEEEecCCCC--CCCeEEEEEEE---eCCc------EEEEEecc---c---------------------hhhHHH
Confidence 468999999988765 34444333332 2211 13454443 1 012345
Q ss_pred HHHHhCC--CEEEEeCCchhHHHHHHHHHHHhCCCCCCCCceeehHHHHHHHhCCCCCCCCHHHHHH-HhCCC-CCC---
Q 023805 93 IFSILNG--RVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLAS-YFGLG-QQK--- 165 (277)
Q Consensus 93 l~~~l~~--~~lv~hn~~~fD~~~L~~~~~~~g~~~p~~~~~iDt~~l~~~~~~~~~~~~~L~~La~-~~gi~-~~~--- 165 (277)
|..+|.+ ...|+||+ ++|+.+|.. .+|+... .++||+ ++.+.+++. .++|..|++ ++|+. ...
T Consensus 174 L~~lL~dp~i~KV~H~~-k~Dl~~L~~---~~Gi~~~---~~fDT~-lAa~lL~~~--~~gL~~Lv~~~Lg~~l~K~~~~ 243 (428)
T 3saf_A 174 LNESLTDPAIVKVFHGA-DSDIEWLQK---DFGLYVV---NMFDTH-QAARLLNLG--RHSLDHLLKLYCNVDSNKQYQL 243 (428)
T ss_dssp GHHHHTCTTSEEEESSC-HHHHHHHHH---HHCCCCS---SEEEHH-HHHHHTTCS--CCSHHHHHHHHHCCCCCCTTTT
T ss_pred HHHHHcCCCceEEEeeh-HHHHHHHHH---HcCCCcC---ceeech-hHHHHhCCC--CCCHHHHHHHHcCCCCCccccc
Confidence 6678865 46799999 999988753 4577642 389999 788888764 589999998 55654 111
Q ss_pred -------------CChHHHHHHHHHHHHHHHHhhhcccC
Q 023805 166 -------------HRSLDDVRMNLEVLKHCATVLFLESS 191 (277)
Q Consensus 166 -------------H~Al~DA~~t~~l~~~l~~~l~~~~~ 191 (277)
+-|..||..+.+|+..|..++...+.
T Consensus 244 sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~~~g~ 282 (428)
T 3saf_A 244 ADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGN 282 (428)
T ss_dssp SCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTT
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34678999999999999988866443
No 32
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=97.83 E-value=0.00027 Score=64.83 Aligned_cols=90 Identities=17% Similarity=0.134 Sum_probs=66.9
Q ss_pred HHHHHHhCC--CEEEEeCCchhHHHHHHHHHHHhCCCCCCCCceeehHHHHHHHhCCCCCCCCHHHHHHHh-CCC-CCC-
Q 023805 91 DKIFSILNG--RVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYF-GLG-QQK- 165 (277)
Q Consensus 91 ~~l~~~l~~--~~lv~hn~~~fD~~~L~~~~~~~g~~~p~~~~~iDt~~l~~~~~~~~~~~~~L~~La~~~-gi~-~~~- 165 (277)
..|.+++.+ ...|+||+ ++|+.+|.. .+|+... .++||+ ++.+.+++. .+++|+.|++.| |+. ...
T Consensus 64 ~~L~~ll~d~~i~Kv~h~~-k~Dl~~L~~---~~Gi~~~---~~fDt~-lAa~lL~~~-~~~~L~~L~~~~l~~~l~K~~ 134 (375)
T 1yt3_A 64 SPLKAILRDPSITKFLHAG-SEDLEVFLN---VFGELPQ---PLIDTQ-ILAAFCGRP-MSWGFASMVEEYSGVTLDKSE 134 (375)
T ss_dssp HHHHHHHHCTTSEEEESSC-HHHHHHHHH---HHSSCCS---SEEEHH-HHHHHTTCC-TTCCHHHHHHHHHCCCCCCTT
T ss_pred HHHHHHHcCCCceEEEeeH-HHHHHHHHH---HcCCCCC---cEEEcH-HHHHHcCCC-CChhHHHHHHHHcCCCCCCCc
Confidence 456677754 46899999 999988864 3577654 389999 788888873 479999999966 765 111
Q ss_pred ---------------CChHHHHHHHHHHHHHHHHhhhcc
Q 023805 166 ---------------HRSLDDVRMNLEVLKHCATVLFLE 189 (277)
Q Consensus 166 ---------------H~Al~DA~~t~~l~~~l~~~l~~~ 189 (277)
+-|..||..+..|+..+..++...
T Consensus 135 ~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L~~~ 173 (375)
T 1yt3_A 135 SRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS 173 (375)
T ss_dssp TTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 125679999999999998877543
No 33
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=97.64 E-value=0.0005 Score=71.68 Aligned_cols=165 Identities=13% Similarity=0.127 Sum_probs=95.6
Q ss_pred CcEEEEEeccCCC------CCCC--CCCceEEEEEEEEECCeeeeeceEEEee-cCCCCCCCCchhh--hhcCCCHHHHh
Q 023805 13 AEIVFFDLETTVP------RRAG--QRFWVLEFGAIIVCPRKLVELESFSTLI-KPKDLSAVALKSS--RCDGITREAVE 81 (277)
Q Consensus 13 ~~~v~~D~ETTg~------~~~~--~~~~IieIg~v~v~~~~~~~~~sf~~~v-~P~~~~~i~~~~~--~~~GIt~e~l~ 81 (277)
-.+++||+||++. .|+. ..+.|+.|++++...+... ....++ ....-..+..+.. +-.++....+.
T Consensus 320 lrvlsfDIE~~~~g~~~~~FP~a~~~~D~Ii~IS~~~~~~~~~~---~~~~~v~~l~~~~~~~~f~~~~k~~~~~~~~V~ 396 (1193)
T 2gv9_A 320 YKLMCFDIECKAGGEDELAFPVAGHPEDLVIQISCLLYDLSTTA---LEHVLLFSLGSCDLPESHLNELAARGLPTPVVL 396 (1193)
T ss_dssp CEEEEEEEEEECCSSCTTSCCCTTSTTSEEEEEEEEEEETTTCC---EEEEEEEEESCCCCCHHHHHHHHHTTCCCCEEE
T ss_pred ceEEEEEEEEcccCCCCCCCCCccccCCceEEEEEEEEeccCCC---cceEEEEECCCcCCcchhhhhcccccCCCceEE
Confidence 4799999999753 1211 2478999999877543211 111112 1111001111000 00010000022
Q ss_pred CCCCHHHHHHHHHHHhCC---CEEEEeCCchhHHHHHHHHH-HHhCCCCCCC----------------------------
Q 023805 82 SAPEFEEVADKIFSILNG---RVWAGHNIRRFDCARIKEAF-AEIGKPAPVP---------------------------- 129 (277)
Q Consensus 82 ~a~~f~ev~~~l~~~l~~---~~lv~hn~~~fD~~~L~~~~-~~~g~~~p~~---------------------------- 129 (277)
...+-.+++..|.+++.. .+++|||+..||+.+|..-+ ..+|+..+..
T Consensus 397 ~~~sE~eLL~~F~~~I~~~DPDIIvGyNi~~FDlpyL~~Ra~~~~gl~l~~~GRl~r~~~~k~~~~~~~~f~~~~~~~i~ 476 (1193)
T 2gv9_A 397 EFDSEFEMLLAFMTLVKQYGPEFVTGYNIINFDWPFLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIGQSHFQKRSKIKVN 476 (1193)
T ss_dssp EESSHHHHHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCCTTTSSBSSSCCEEECC----------CEEET
T ss_pred ecCCHHHHHHHHHHHHHhcCCCEEEEcCCcCccHHHHHHHHHHHcCCChHHhcccccCCcceeeccccccccccceEEEc
Confidence 234557899999999954 59999999999999988764 5566655410
Q ss_pred -CceeehHHHHHHHhCCCCCCCCHHHHHHH-hCCCCCC---------------------CChHHHHHHHHHHHHHH
Q 023805 130 -VGMIDSLGVLTEKFGRRAGNMKMATLASY-FGLGQQK---------------------HRSLDDVRMNLEVLKHC 182 (277)
Q Consensus 130 -~~~iDt~~l~~~~~~~~~~~~~L~~La~~-~gi~~~~---------------------H~Al~DA~~t~~l~~~l 182 (277)
-..+|++.++... ....+++|+++|++ +|.+... +-.+.||..+.+|+.++
T Consensus 477 GRv~lDl~~~~~~~--~kl~sYsL~~Va~~~Lg~~K~dv~~~eI~~~~~~~~~~r~~L~~Ycl~Da~lt~~L~~kl 550 (1193)
T 2gv9_A 477 GMVNIDMYGIITDK--IKLSSYKLNAVAEAVLKDKKKDLSYRDIPAYYATGPAQRGVIGEYCIQDSLLVGQLFFKF 550 (1193)
T ss_dssp TBEEEEHHHHHTTT--CCCSCCCHHHHHHHTSCCCCCCCCTTTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEeehHHHHHHHH--hccCCCCHHHHHHHHhccCCCCCCHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0257888655332 35678999999984 6655211 11246888888888776
No 34
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=97.63 E-value=0.00087 Score=62.21 Aligned_cols=91 Identities=15% Similarity=0.211 Sum_probs=68.2
Q ss_pred HHHHHHhCC--CEEEEeCCchhHHHHHHHHHHHhCCCCCCCCceeehHHHHHHHhCCCCCCCCHHHHHHHh-CCC-CCC-
Q 023805 91 DKIFSILNG--RVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYF-GLG-QQK- 165 (277)
Q Consensus 91 ~~l~~~l~~--~~lv~hn~~~fD~~~L~~~~~~~g~~~p~~~~~iDt~~l~~~~~~~~~~~~~L~~La~~~-gi~-~~~- 165 (277)
..|..+|.+ ...|+||+ ++|+.+|... +|+... .++||+ ++.+++++. +++|..|++.| |+. ...
T Consensus 149 ~~L~~lL~d~~i~KV~h~~-k~Dl~~L~~~---~Gi~~~---~~fDt~-lAa~LL~~~--~~~L~~L~~~~lg~~l~K~~ 218 (410)
T 2hbj_A 149 HILNEVFTNPSIVKVFHGA-FMDIIWLQRD---LGLYVV---GLFDTY-HASKAIGLP--RHSLAYLLENFANFKTSKKY 218 (410)
T ss_dssp GGGHHHHTCTTSEEEESSC-HHHHHHHHHH---HCCCCS---SEEEHH-HHHHHHTCS--CCSHHHHHHHHSCCCCCCTT
T ss_pred HHHHHHHcCCCceEEEEeh-HHHHHHHHHH---cCCCcC---CEEEcH-HHHHHhCCC--ccCHHHHHHHHcCCCCCccc
Confidence 356678865 46899999 9999888643 577643 289999 788888764 68999999977 654 111
Q ss_pred ---------------CChHHHHHHHHHHHHHHHHhhhcccC
Q 023805 166 ---------------HRSLDDVRMNLEVLKHCATVLFLESS 191 (277)
Q Consensus 166 ---------------H~Al~DA~~t~~l~~~l~~~l~~~~~ 191 (277)
+-|..||..+..|+..|..++...+.
T Consensus 219 ~~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L~~~g~ 259 (410)
T 2hbj_A 219 QLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLIESNK 259 (410)
T ss_dssp TTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTC
T ss_pred cccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 22578999999999999988766443
No 35
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=97.63 E-value=0.0014 Score=66.45 Aligned_cols=163 Identities=13% Similarity=0.170 Sum_probs=100.1
Q ss_pred CCcEEEEEeccCCCC--CC--CCCCceEEEEEEEEECCeeeeeceEEEe--ecCCCCCCCCchhh---------hhcCCC
Q 023805 12 TAEIVFFDLETTVPR--RA--GQRFWVLEFGAIIVCPRKLVELESFSTL--IKPKDLSAVALKSS---------RCDGIT 76 (277)
Q Consensus 12 ~~~~v~~D~ETTg~~--~~--~~~~~IieIg~v~v~~~~~~~~~sf~~~--v~P~~~~~i~~~~~---------~~~GIt 76 (277)
.-.++.||+|++..+ |+ ...++|+.|++.--++. .|..+ ++++.+ ...++.. .-..+.
T Consensus 107 ~ir~~~~DIEv~~~~~fPd~~~~~~~Ii~It~~d~~~~------~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 179 (903)
T 3qex_A 107 KIRVANFDIEVTSPDGFPEPSQAKHPIDAITHYDSIDD------RFYVFDLLNSPYG-NVEEWSIEIAAKLQEQGGDEVP 179 (903)
T ss_dssp GSCEEEEEEECCCTTSSCCTTTCCSCCCEEEEEETTTT------EEEEEEECEETTE-ECCCCCHHHHHSCGGGTCCCCC
T ss_pred cccEEEEeEEeCCCCCCCCcccCCCCEEEEEEEeCCCC------EEEEEEeeccccc-cccccccccccccccccccccc
Confidence 357899999997632 21 12568999988633333 23332 222110 1112211 112344
Q ss_pred HHHHhC-----CCCHHHHHHHHHHHhCC---CEEEEeCCchhHHHHHHHHHHH-hCCCC-----CC--------------
Q 023805 77 REAVES-----APEFEEVADKIFSILNG---RVWAGHNIRRFDCARIKEAFAE-IGKPA-----PV-------------- 128 (277)
Q Consensus 77 ~e~l~~-----a~~f~ev~~~l~~~l~~---~~lv~hn~~~fD~~~L~~~~~~-~g~~~-----p~-------------- 128 (277)
.+.+.+ -.+-.+++..|.+|+.. .+++|||+..||+++|..-+.. +|+.. +.
T Consensus 180 ~~~~~~v~v~~f~sE~eLL~~F~~~I~~~DPDIItGyN~~~FDlPYL~~RA~~l~gi~~~~~ls~~gR~~~~~~~~~~G~ 259 (903)
T 3qex_A 180 SEIIDKIIYMPFDNEKELLMEYLNFWQQKTPVILTGWNVESFAIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIENMYGS 259 (903)
T ss_dssp HHHHTTEEEEEESSHHHHHHHHHHHHHHTCCSEEECSSTTTTHHHHHHHHHHHHHCHHHHGGGSTTSCEEEEEEEETTEE
T ss_pred cccCCCeEEEEcCCHHHHHHHHHHHHHHhCCCEEEecCCccCCHHHHHHHHHHHcCCcccccccccccccccchhhhcCC
Confidence 444443 24667899999999953 6899999999999999877766 46421 00
Q ss_pred -------CCceeehHHHHHHHhCCCCCCCCHHHHHHHh-CCCCCCCC-----------------hHHHHHHHHHHHHH
Q 023805 129 -------PVGMIDSLGVLTEKFGRRAGNMKMATLASYF-GLGQQKHR-----------------SLDDVRMNLEVLKH 181 (277)
Q Consensus 129 -------~~~~iDt~~l~~~~~~~~~~~~~L~~La~~~-gi~~~~H~-----------------Al~DA~~t~~l~~~ 181 (277)
.-..+|++.+++..-...+.+++|+++|+++ |.+...++ .+.||..+++|+.+
T Consensus 260 ~~~~~i~GRv~lDl~~~~k~~~~~~l~SYsLd~VA~~lLg~~K~d~~~~I~~~~~~d~~~L~~Ycl~Da~Lt~~L~~K 337 (903)
T 3qex_A 260 REIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVGKLKYDGPISKLRESNHQRYISYNIIAVYRVLQIDAK 337 (903)
T ss_dssp EEEEEETTCEECCHHHHHHHHSCCCCSCCCHHHHHHHHHCCCCCCCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEeCeEEeeHHHHHHHhCccCcCCCCHHHHHHHHcCCCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 1126888887754323456789999999865 44432221 25799999999877
No 36
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=97.62 E-value=0.00022 Score=59.66 Aligned_cols=89 Identities=15% Similarity=0.081 Sum_probs=64.1
Q ss_pred HHHHHHhCC--CEEEEeCCchhHHHHHHHHHHHhCCCCCCCCceee-hHHHHHHHhCCCCCCCCHHHHHHHh-CCCC---
Q 023805 91 DKIFSILNG--RVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMID-SLGVLTEKFGRRAGNMKMATLASYF-GLGQ--- 163 (277)
Q Consensus 91 ~~l~~~l~~--~~lv~hn~~~fD~~~L~~~~~~~g~~~p~~~~~iD-t~~l~~~~~~~~~~~~~L~~La~~~-gi~~--- 163 (277)
..|..++.+ ...|+||+ ++|+..|... +|+... .++| ++ ++.+.+++ ..+++|+.|++.| |...
T Consensus 86 ~~L~~lL~d~~i~Kv~~~~-k~D~~~L~~~---~gi~~~---~~fDlt~-lAayll~~-~~~~~L~~L~~~~l~~~~~K~ 156 (208)
T 2e6m_A 86 QGLKMLLENKSIKKAGVGI-EGDQWKLLRD---FDVKLE---SFVELTD-VANEKLKC-AETWSLNGLVKHVLGKQLLKD 156 (208)
T ss_dssp HHHHHHHTCTTSEEEESSH-HHHHHHHHHH---HCCCCC---SEEEHHH-HHHHHTTC-CCCCCHHHHHHHHHSCBCCCC
T ss_pred HHHHHHhcCCCceEEEEee-HHHHHHHHHH---CCCCCC---CEEEHHH-HHHHHccC-CCChhHHHHHHHHcCCCcCCC
Confidence 356778865 47899999 9999888632 577643 2899 55 88888877 4579999999976 6431
Q ss_pred ---------C-C------CChHHHHHHHHHHHHHHHHhhhc
Q 023805 164 ---------Q-K------HRSLDDVRMNLEVLKHCATVLFL 188 (277)
Q Consensus 164 ---------~-~------H~Al~DA~~t~~l~~~l~~~l~~ 188 (277)
. . +-|..||..+.+|+..+.+++..
T Consensus 157 k~~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~~ 197 (208)
T 2e6m_A 157 KSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGDT 197 (208)
T ss_dssp HHHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred CCeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 1 1 22568999999999988776544
No 37
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=97.62 E-value=0.00096 Score=66.76 Aligned_cols=97 Identities=15% Similarity=0.236 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHhCC---CEEEEeCCchhHHHHHHHHHHHhCCCCCC-------------C-----------CceeehHH
Q 023805 85 EFEEVADKIFSILNG---RVWAGHNIRRFDCARIKEAFAEIGKPAPV-------------P-----------VGMIDSLG 137 (277)
Q Consensus 85 ~f~ev~~~l~~~l~~---~~lv~hn~~~fD~~~L~~~~~~~g~~~p~-------------~-----------~~~iDt~~ 137 (277)
+-.+++..|.+++.. .+++|||+..||+++|..-+..+|++... . -..+|.+.
T Consensus 203 ~E~~lL~~f~~~i~~~dPDii~g~N~~~FD~pyL~~Ra~~~~i~~~lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~ 282 (786)
T 3k59_A 203 SRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIE 282 (786)
T ss_dssp SHHHHHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHH
T ss_pred CHHHHHHHHHHHHHHcCCCEEEecCCccCcHHHHHHHHHHhCCCceeccCCCcccccccccCCCceeEEEcCEEEEEhHH
Confidence 346899999999854 58999999999999999888888876321 0 12578887
Q ss_pred HHHHHhCCCCCCCCHHHHHHHh-CCCCCCCCh----------------------HHHHHHHHHHHHHH
Q 023805 138 VLTEKFGRRAGNMKMATLASYF-GLGQQKHRS----------------------LDDVRMNLEVLKHC 182 (277)
Q Consensus 138 l~~~~~~~~~~~~~L~~La~~~-gi~~~~H~A----------------------l~DA~~t~~l~~~l 182 (277)
++... .....+++|+++|+++ |.++..|+. +.||..+.+|+.++
T Consensus 283 ~lk~~-~~~l~SysL~~Va~~~Lg~~K~~~~~~~~~~eI~~~~~~~~~~L~~Y~l~Da~L~~~L~~kl 349 (786)
T 3k59_A 283 ALKSA-FWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKNCELVTQIFHKT 349 (786)
T ss_dssp HHHHT-TCCCSCCSHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhc-cCCCCCCCHHHHHHHHhCCCCcccCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 66542 2357799999999965 555433332 57888888888774
No 38
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=97.38 E-value=0.0019 Score=60.52 Aligned_cols=90 Identities=18% Similarity=0.285 Sum_probs=68.9
Q ss_pred HHHHHHHhCCCEEEEeCCchhHHHHHHHHHHHhCCCCCCCCceeehHHHHHHHhCCCCCCCCHHHHHHHh-CCC--C---
Q 023805 90 ADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYF-GLG--Q--- 163 (277)
Q Consensus 90 ~~~l~~~l~~~~lv~hn~~~fD~~~L~~~~~~~g~~~p~~~~~iDt~~l~~~~~~~~~~~~~L~~La~~~-gi~--~--- 163 (277)
+..|.++|.+...|+|+. ++|+.+|. .+|+... .++||+ ++.+.+++. +++|..|++.| |.. +
T Consensus 84 l~~L~~lL~d~~KV~h~~-k~Dl~~L~----~~gi~~~---~~fDt~-lAa~lL~~~--~~gL~~L~~~~lg~~~~K~~~ 152 (440)
T 3cym_A 84 WNDFNRAVGDAVWILHDS-LQDLPGFD----ELGMEPQ---RLFDTE-IAARLLGLK--RFGLAAVTEHFLGLTLAKEHS 152 (440)
T ss_dssp HHHHHHHHTTCEEEESSH-HHHHHHHH----HHTCCCC---EEEEHH-HHHHHTTCS--SCSHHHHHHHHHCEECCCCCT
T ss_pred HHHHHHHHCCCCEEEEcC-HHHHHHHH----HcCCcCC---ceehHH-HHHHHhCCC--CCCHHHHHHHHhCCCcccccc
Confidence 345777887778999999 99998774 4677654 489996 888999873 89999999977 543 1
Q ss_pred ------CC------CChHHHHHHHHHHHHHHHHhhhccc
Q 023805 164 ------QK------HRSLDDVRMNLEVLKHCATVLFLES 190 (277)
Q Consensus 164 ------~~------H~Al~DA~~t~~l~~~l~~~l~~~~ 190 (277)
.. ..|..||..+..|+..+..++...+
T Consensus 153 ~sdw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~L~~~g 191 (440)
T 3cym_A 153 AADWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQG 191 (440)
T ss_dssp TCCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred cCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 01 2267899999999999988876544
No 39
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=97.12 E-value=0.0094 Score=49.99 Aligned_cols=87 Identities=14% Similarity=0.106 Sum_probs=63.9
Q ss_pred HHHHHHhCC--CEEEEeCCchhHHHHHHHHHHHhCCCCCCCCceeehHHHHHHHhCCC-CCCCCHHHHHH-HhCCCC---
Q 023805 91 DKIFSILNG--RVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRR-AGNMKMATLAS-YFGLGQ--- 163 (277)
Q Consensus 91 ~~l~~~l~~--~~lv~hn~~~fD~~~L~~~~~~~g~~~p~~~~~iDt~~l~~~~~~~~-~~~~~L~~La~-~~gi~~--- 163 (277)
..|.++|.+ -+.|||++ ++|+..|... +|+.. ..++|+..++...++.. ....+|..|++ .+|++-
T Consensus 98 ~~L~~lL~d~~i~Kvg~~~-~~D~~~L~~~---~g~~~---~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~lK~k 170 (206)
T 1vk0_A 98 KDLYRFFASKFVTFVGVQI-EEDLDLLREN---HGLVI---RNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQL 170 (206)
T ss_dssp HHHHHHHTCSSSEEEESSC-HHHHHHHHHH---HCCCC---SSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCCHHH
T ss_pred HHHHHHhcCCCceEEEecc-HHHHHHHHHh---cCCCc---CCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhCCcCCCC
Confidence 346678865 57899999 9999988654 46653 24999987776666542 45689999988 556653
Q ss_pred --------------CCCChHHHHHHHHHHHHHHHH
Q 023805 164 --------------QKHRSLDDVRMNLEVLKHCAT 184 (277)
Q Consensus 164 --------------~~H~Al~DA~~t~~l~~~l~~ 184 (277)
+-+-|..||..+.+|+.++.+
T Consensus 171 ~~~~SdW~~pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 171 DSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 225688999999999998865
No 40
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=96.78 E-value=0.01 Score=55.37 Aligned_cols=85 Identities=22% Similarity=0.291 Sum_probs=60.8
Q ss_pred CCCEEEEeCCchhHHHHHHHHHHHhCCCCC-------------CCCceeehHHHHHHH-hCCCCCCCCHHHHHHHhCC--
Q 023805 98 NGRVWAGHNIRRFDCARIKEAFAEIGKPAP-------------VPVGMIDSLGVLTEK-FGRRAGNMKMATLASYFGL-- 161 (277)
Q Consensus 98 ~~~~lv~hn~~~fD~~~L~~~~~~~g~~~p-------------~~~~~iDt~~l~~~~-~~~~~~~~~L~~La~~~gi-- 161 (277)
.+.++||||. -.|+-++.+.|- -++| |+ .++||.-|+... +.....+.+|..|.+.+.-
T Consensus 280 s~KpiVGHN~-llDl~~l~~~F~---~pLP~~~~eFk~~i~~lFP-~i~DTK~la~~~~~~~~~~~~sL~~l~~~l~~~~ 354 (430)
T 2a1r_A 280 SGKLVIGHNM-LLDVMHTVHQFY---CPLPADLSEFKEMTTCVFP-RLLDTKLMASTQPFKDIINNTSLAELEKRLKETP 354 (430)
T ss_dssp HCCEEEESSC-HHHHHHHHHHHT---CCCCSSHHHHHHHHHHHCS-SEEEHHHHHTSTTTTTTCSCCSHHHHHHHTTSTT
T ss_pred CCCceEechh-HHHHHHHHHHhc---cCCCCCHHHHHHHHHHHCC-ceeehHHhhhccchhhccCCCCHHHHHHHHHhCC
Confidence 3579999999 999998876652 2444 23 489998665332 1122356789999986631
Q ss_pred ------------------CCCCCChHHHHHHHHHHHHHHHHhhh
Q 023805 162 ------------------GQQKHRSLDDVRMNLEVLKHCATVLF 187 (277)
Q Consensus 162 ------------------~~~~H~Al~DA~~t~~l~~~l~~~l~ 187 (277)
.+..|.|-.||.+|..++.+|+..+.
T Consensus 355 ~~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~l~ 398 (430)
T 2a1r_A 355 FNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG 398 (430)
T ss_dssp CCCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHHHG
T ss_pred CCCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHHHHh
Confidence 13459999999999999999998763
No 41
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=96.57 E-value=0.005 Score=58.61 Aligned_cols=85 Identities=22% Similarity=0.285 Sum_probs=62.0
Q ss_pred CCCEEEEeCCchhHHHHHHHHHHHhCCCCC-------------CCCceeehHHHHHHH-hCCCCCCCCHHHHHHHhCC--
Q 023805 98 NGRVWAGHNIRRFDCARIKEAFAEIGKPAP-------------VPVGMIDSLGVLTEK-FGRRAGNMKMATLASYFGL-- 161 (277)
Q Consensus 98 ~~~~lv~hn~~~fD~~~L~~~~~~~g~~~p-------------~~~~~iDt~~l~~~~-~~~~~~~~~L~~La~~~gi-- 161 (277)
.+.+|||||. -+|+.+|.+.|- -++| |+ .++||.-|+... +.....+.+|+.|++.++.
T Consensus 275 ~~kpiVgHN~-l~Dl~~l~~~F~---~pLP~~~~eFk~~i~~lFP-~i~DTK~la~~~~~~~~~~~~~L~~l~~~l~~~~ 349 (507)
T 3d45_A 275 SGKLVVGHNM-LLDVMHTIHQFY---CPLPADLNEFKEMAICVFP-RLLDTKLMASTQPFKDIINNTSLAELEKRLKETP 349 (507)
T ss_dssp HCCEEEESSC-HHHHHHHHHHHT---CSCCSSHHHHHHHHHHHCS-CEEEHHHHTTSTTHHHHCCCCCHHHHHHHTTSTT
T ss_pred CCCeEEEech-HHHHHHHHHHhc---CCCCCCHHHHHHHHHHhCC-ceeEhHhhhhcCccccccCCCCHHHHHHHHhccC
Confidence 3679999999 999999887773 2444 23 489998654320 1111346799999998862
Q ss_pred ---C---------------CCCCChHHHHHHHHHHHHHHHHhhh
Q 023805 162 ---G---------------QQKHRSLDDVRMNLEVLKHCATVLF 187 (277)
Q Consensus 162 ---~---------------~~~H~Al~DA~~t~~l~~~l~~~l~ 187 (277)
+ +..|.|-.||.+|..++.+|+..+.
T Consensus 350 ~~~p~i~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~~l~ 393 (507)
T 3d45_A 350 FDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG 393 (507)
T ss_dssp CCCCCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEecccccccccCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 1 2469999999999999999998764
No 42
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=96.22 E-value=0.022 Score=55.03 Aligned_cols=125 Identities=18% Similarity=0.176 Sum_probs=78.7
Q ss_pred CCcEEEEEeccCCCCCCCCCCceEEEEEEEEECCeeeeeceEEEeecCCCCCCCCchhhhhcCCCHHHHhCCCCHHHHHH
Q 023805 12 TAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEEVAD 91 (277)
Q Consensus 12 ~~~~v~~D~ETTg~~~~~~~~~IieIg~v~v~~~~~~~~~sf~~~v~P~~~~~i~~~~~~~~GIt~e~l~~a~~f~ev~~ 91 (277)
.+.++++|+||+. ++ ..+.++-+|+ ++++.. ..|... . . +.
T Consensus 5 ~~~i~~~D~Et~~-d~--~~~~~~~i~~--~~~~~~---~~~~~~----~-----------------------~----l~ 45 (575)
T 2py5_A 5 PRKMYSCAFETTT-KV--EDCRVWAYGY--MNIEDH---SEYKIG----N-----------------------S----LD 45 (575)
T ss_dssp CCCEEEEEEEECC-BT--TBCCEEEEEE--EESSCT---TCEEEE----S-----------------------C----HH
T ss_pred cceEEEEEEEeec-CC--CCCceEEEEE--EeCCce---EEEEec----h-----------------------h----HH
Confidence 4569999999964 33 4566777776 344321 223210 0 1 23
Q ss_pred HHHHHh--CCCEEEEeCCchhHHHHHHHHHHHhC-------CCCC-------C------------------CCceeehHH
Q 023805 92 KIFSIL--NGRVWAGHNIRRFDCARIKEAFAEIG-------KPAP-------V------------------PVGMIDSLG 137 (277)
Q Consensus 92 ~l~~~l--~~~~lv~hn~~~fD~~~L~~~~~~~g-------~~~p-------~------------------~~~~iDt~~ 137 (277)
+|.+|+ .+..+++||. .||..+|...+...| ++.. . ...++|++.
T Consensus 46 ~fi~~~~~~~~~i~~hNl-~FD~~~l~~~~~~~~~~~~~~~~p~~~~~~i~r~~~~~~~~i~~~~~~k~~~~i~~~Ds~~ 124 (575)
T 2py5_A 46 EFMAWVLKVQADLYFHNL-KFAGAFIINWLERNGFKWSADGLPNTYNTIISRMGQWYMIDICLGYKGKRKIHTVIYDSLK 124 (575)
T ss_dssp HHHHHHHHHCCEEEETTH-HHHHHHHHHHHHHTTCEECTTCCTTEEEEEEBTTCCEEEEEEEEEEETTEEEEEEEEEHHH
T ss_pred HHHHHHHHcCCEEEEECh-hhhHHHHHHHHHHhCcccccccccccccceeccCCeEEEEEEEEecCCCceEEEEEEEhHh
Confidence 445555 3467888999 999999999888875 2111 0 014566664
Q ss_pred HHHHHhCCCCCCCCHHHHHHHhCCCCC----C----------------CChHHHHHHHHHHHHHHHHh
Q 023805 138 VLTEKFGRRAGNMKMATLASYFGLGQQ----K----------------HRSLDDVRMNLEVLKHCATV 185 (277)
Q Consensus 138 l~~~~~~~~~~~~~L~~La~~~gi~~~----~----------------H~Al~DA~~t~~l~~~l~~~ 185 (277)
++ ..+|+.+++.|+++.. + +-.+.||+.+++++......
T Consensus 125 ~~---------~~SL~~~a~~f~~~~~K~~~py~~~~~~~~~~~~~~~~Y~~~Dv~ll~~i~~~~f~~ 183 (575)
T 2py5_A 125 KL---------PFPVKKIAKDFKLTVLKGDIDYHKERPVGYKITPEEYAYIKNDIQIIAEALLIQFKQ 183 (575)
T ss_dssp HS---------CSCHHHHHHHTTCCCCSSCCCTTSCCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hh---------hhhHHHHHHHhCCcccCCccCccccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 32 3799999999987610 1 12378999999988876543
No 43
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=95.99 E-value=0.019 Score=57.84 Aligned_cols=82 Identities=11% Similarity=0.003 Sum_probs=62.3
Q ss_pred HHHHHHhCCCEEEEeCCchhHHHHHHHHHHHhCCCCCCCCceeehHHHHHHHhCCCCCCCCHHHHHHHhCCCCCCCChHH
Q 023805 91 DKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLD 170 (277)
Q Consensus 91 ~~l~~~l~~~~lv~hn~~~fD~~~L~~~~~~~g~~~p~~~~~iDt~~l~~~~~~~~~~~~~L~~La~~~gi~~~~H~Al~ 170 (277)
..|..||.+.-+ |. +||+.+|. ++|+... .++||+ ++.+++++. +++|+.|++.||-.. ......
T Consensus 340 ~~Lk~lLed~~i---n~-K~d~~~L~----~~Gi~~~---~~~Dt~-laayLl~p~--~~~l~~l~~~~gk~~-~~~ya~ 404 (832)
T 1bgx_T 340 KALRDLKEARGL---LA-KDLSVLAL----REGLGLP---PGDDPM-LLAYLLDPS--NTTPEGVARRYGGEW-TEEAGE 404 (832)
T ss_dssp HHHHHCSSBCBT---TH-HHHHHHHH----HHTCCCC---BCCCHH-HHHHHHCTT--CCSTTHHHHHHSCCC-CSSHHH
T ss_pred HHHHHHHhCCCC---Ch-HHHHHHHH----HcCCccC---cccCHH-HHHHHcCCC--CCCHHHHHHHhCCCc-hHHHHH
Confidence 457778876433 88 99998775 5688876 379999 899999987 789999999997421 111236
Q ss_pred HHHHHHHHHHHHHHhhh
Q 023805 171 DVRMNLEVLKHCATVLF 187 (277)
Q Consensus 171 DA~~t~~l~~~l~~~l~ 187 (277)
||..+.+|+..+..++.
T Consensus 405 da~~~~~l~~~l~~~L~ 421 (832)
T 1bgx_T 405 RAALSERLFANLWGRLE 421 (832)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999877765
No 44
>3q7c_A Nucleoprotein; deddh exonuclease, 3' exonuclease, hydrolase; 1.50A {Lassa virus} PDB: 3q7b_A 4fvu_A
Probab=89.81 E-value=0.52 Score=39.05 Aligned_cols=107 Identities=13% Similarity=0.144 Sum_probs=69.8
Q ss_pred CCCCCcEEEEEeccCCCCCCCCCCceEEEEEEEEECCeeeeeceEEEeecCCCCCCCCchhhhhcCCCHHHHhCCCCHHH
Q 023805 9 AAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEE 88 (277)
Q Consensus 9 ~~~~~~~v~~D~ETTg~~~~~~~~~IieIg~v~v~~~~~~~~~sf~~~v~P~~~~~i~~~~~~~~GIt~e~l~~a~~f~e 88 (277)
...+..-.++|+|.... ..+||++ +.+..+. -.+.|=+|.+....-..+...|||--.+|+++.+ -
T Consensus 53 ~LdP~~ttWiDIEG~p~-------DPVElAi--yQP~sg~---YIHcyR~P~D~K~FK~~SKySHGillkDl~~aqP--G 118 (243)
T 3q7c_A 53 QLDPNAKTWMDIEGRPE-------DPVEIAL--YQPSSGC---YIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQP--G 118 (243)
T ss_dssp TSCTTSCCEEEEESCTT-------SCSEEEE--EETTTTE---EEEEECCCSCHHHHHHHHHHTTCBCGGGGTTBCT--T
T ss_pred hcCCCCCeEEecCCCCC-------CCeEEEE--eccCCCc---EEEEecCCcchhhhcccCccccceehhhhhhcCC--c
Confidence 35566677899995432 3578877 4444332 2345556665334445667789999999999876 5
Q ss_pred HHHHHHHHhCCCEEEEeCCchhHHHHHHHHHHHhCCCCCCCCceeehH
Q 023805 89 VADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSL 136 (277)
Q Consensus 89 v~~~l~~~l~~~~lv~hn~~~fD~~~L~~~~~~~g~~~p~~~~~iDt~ 136 (277)
....+...|....++.--. .-|+..|- ...|..- ..+||+.
T Consensus 119 L~S~vi~~LP~nMVlT~QG-sDDIrkLl---d~hGRrD---iKlIDV~ 159 (243)
T 3q7c_A 119 LTSAVIDALPRNMVITCQG-SDDIRKLL---ESQGRKD---IKLIDIA 159 (243)
T ss_dssp HHHHHHHHSCTTCEEEESS-HHHHHHHH---HHTTCTT---SEEEECC
T ss_pred hHHHHHHhCCcCcEEEeeC-hHHHHHHH---HhcCCcc---ceEEEee
Confidence 6777788887776666666 88887654 4445432 2367765
No 45
>3mwp_A Nucleoprotein; structural genomics, scottish structural PROT facility, SSPF, nuclear protein; 1.79A {Lassa virus josiah} PDB: 3mwt_A 3mx2_A* 3mx5_A* 3r3l_A 3t5q_A 3t5n_A
Probab=61.71 E-value=8.7 Score=35.36 Aligned_cols=107 Identities=13% Similarity=0.144 Sum_probs=69.5
Q ss_pred CCCCCcEEEEEeccCCCCCCCCCCceEEEEEEEEECCeeeeeceEEEeecCCCCCCCCchhhhhcCCCHHHHhCCCCHHH
Q 023805 9 AAGTAEIVFFDLETTVPRRAGQRFWVLEFGAIIVCPRKLVELESFSTLIKPKDLSAVALKSSRCDGITREAVESAPEFEE 88 (277)
Q Consensus 9 ~~~~~~~v~~D~ETTg~~~~~~~~~IieIg~v~v~~~~~~~~~sf~~~v~P~~~~~i~~~~~~~~GIt~e~l~~a~~f~e 88 (277)
...+..-.++|+|.... ..+||++ +.+.... -.++|=+|.+...........|||.-.+|+++.+ -
T Consensus 387 ~ldp~~ttWiDIEG~p~-------DPVE~Ai--yQP~~g~---YiHcyR~P~D~K~FK~~SkysHGillkDl~~aqP--G 452 (577)
T 3mwp_A 387 QLDPNAKTWMDIEGRPE-------DPVEIAL--YQPSSGC---YIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQP--G 452 (577)
T ss_dssp GSCTTSCEEEEEESCTT-------SCSEEEE--EETTTTE---EEEEECCCSCHHHHHHHHHHTTCBCGGGGGGBCT--T
T ss_pred hCCCCCCeEEecCCCCC-------CCeEEEE--eccCCCc---EEEEecCCcchhhhcccCccccceehhhhhhcCC--c
Confidence 35566778999995432 3578876 4444332 2445666766334445667789999999998876 5
Q ss_pred HHHHHHHHhCCCEEEEeCCchhHHHHHHHHHHHhCCCCCCCCceeehH
Q 023805 89 VADKIFSILNGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSL 136 (277)
Q Consensus 89 v~~~l~~~l~~~~lv~hn~~~fD~~~L~~~~~~~g~~~p~~~~~iDt~ 136 (277)
....+...|....++..-. .-|+..|- ...|..- ..+||..
T Consensus 453 L~S~vi~~LP~~mV~T~QG-sdDI~kLl---d~hGR~D---iK~iDV~ 493 (577)
T 3mwp_A 453 LTSAVIDALPRNMVITCQG-SDDIRKLL---ESQGRKD---IKLIDIA 493 (577)
T ss_dssp HHHHHHHHSCTTCEEEESS-HHHHHHHH---HHTTCTT---CEEEECC
T ss_pred hHHHHHHhCCcCcEEEeeC-hHHHHHHH---HhcCCcc---ceEEEee
Confidence 6677777887776666666 88887654 4445432 2367765
No 46
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=53.04 E-value=1 Score=46.03 Aligned_cols=37 Identities=24% Similarity=0.433 Sum_probs=27.3
Q ss_pred CCCEEEEeCCchhHHHHHHHHHHHhCCCCCCCCceeehHHHH
Q 023805 98 NGRVWAGHNIRRFDCARIKEAFAEIGKPAPVPVGMIDSLGVL 139 (277)
Q Consensus 98 ~~~~lv~hn~~~fD~~~L~~~~~~~g~~~p~~~~~iDt~~l~ 139 (277)
+.+++||||+ .||+..+.++ |.+.. ....++|||.|.
T Consensus 193 ~~rlIVGHNV-syDRARI~Ee---Y~l~~-sk~rFlDTMSLH 229 (1172)
T 3ikm_A 193 QEQLVVGHNV-SFDRAHIREQ---YLIQG-SRMRFLDTMSMH 229 (1172)
T ss_dssp SCCCCBCBCS-SSSTTGGGTS---SCSSC-CCCCCCBTTHHH
T ss_pred CccEEEeCCc-chhHHHHHHH---Hhccc-CCceeeechhhh
Confidence 3589999999 9999987743 44543 234689999775
No 47
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=40.07 E-value=46 Score=30.47 Aligned_cols=49 Identities=20% Similarity=0.179 Sum_probs=33.2
Q ss_pred CCcEEEEEeccCCCCCCC-----------------------CCCceEEEEEEEEECCe---eeeeceEEEeecCC
Q 023805 12 TAEIVFFDLETTVPRRAG-----------------------QRFWVLEFGAIIVCPRK---LVELESFSTLIKPK 60 (277)
Q Consensus 12 ~~~~v~~D~ETTg~~~~~-----------------------~~~~IieIg~v~v~~~~---~~~~~sf~~~v~P~ 60 (277)
...||++|+|.+|+.... ....|||+|+...+.++ ......|+.++-|.
T Consensus 21 ~~~fVAiD~Ef~Gi~~~~~~~~~~~~~~s~e~~Y~~lr~nv~~~~iiQlGlt~f~~~~~~~~~~~~~fNF~~FP~ 95 (430)
T 2a1r_A 21 EADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK 95 (430)
T ss_dssp HCSEEEEEEEESCSCSSSCC-----CCCCHHHHHHHHHHHTTTBCEEEEEEEEEEEETTTTEEEEEEEEEEBCCC
T ss_pred cCCEEEEeeeeccccCCCccccccccCCCHHHHHHHHHHHHhhcceeeEEEEEEeecCCCCceeEEEEEEEeccc
Confidence 357999999999985210 11469999999887432 22346788887663
No 48
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved unknown protein, structural genomics, PSI; NMR {Rhodopseudomonas palustris} SCOP: a.282.1.1
Probab=38.53 E-value=1.1e+02 Score=22.96 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=43.1
Q ss_pred HHHHHHHHhCCCCCCCCceeehHHHHHHHhCCCCCCCCHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhhhc
Q 023805 114 RIKEAFAEIGKPAPVPVGMIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFL 188 (277)
Q Consensus 114 ~L~~~~~~~g~~~p~~~~~iDt~~l~~~~~~~~~~~~~L~~La~~~gi~~~~H~Al~DA~~t~~l~~~l~~~l~~ 188 (277)
.|.....+.|..+.+...++|.+++ ++-+..--.=..||+.+|+..... +.|.+..-|.+.++++|-.
T Consensus 52 vL~~~~~~~~~~lnWrtSIVDLmKl----LglDsSl~~RkeLA~eL~~~~~~~---dSA~mNiwLHk~vm~kLa~ 119 (130)
T 2gqb_A 52 ILDKAVKAKGEKLEWRTSIVDLMKA----LDIDSSLSARKELAKELGYSGDMN---DSASMNIWLHKQVMSKLVA 119 (130)
T ss_dssp HHHHHHHHHSSCCCTTTCHHHHHHH----TCCCCSHHHHHHHHHHHTCCCSSC---HHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHcCcCCccHHHHHHHHHH----hCCCccHHHHHHHHHHhCCCCCCC---ccHHHHHHHHHHHHHHHHH
Confidence 4445555666655555568888854 333211122367899999985543 5677888888888887754
No 49
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=36.18 E-value=52 Score=30.82 Aligned_cols=49 Identities=20% Similarity=0.189 Sum_probs=33.7
Q ss_pred CCcEEEEEeccCCCCCC--C---------------------CCCceEEEEEEEEECCee---eeeceEEEeecCC
Q 023805 12 TAEIVFFDLETTVPRRA--G---------------------QRFWVLEFGAIIVCPRKL---VELESFSTLIKPK 60 (277)
Q Consensus 12 ~~~~v~~D~ETTg~~~~--~---------------------~~~~IieIg~v~v~~~~~---~~~~sf~~~v~P~ 60 (277)
...||++|+|.+|+... + ..-.|||||+...+.++. .....|+.++-|.
T Consensus 23 ~~~fvaiD~Ef~Gi~~~~~~~~~~~~~~t~~~~Y~~~r~~v~~~~iiQlGlt~f~~~~~~~~~~~~~fNf~~fp~ 97 (507)
T 3d45_A 23 EADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHSMDFLLFQFGLCAFKYDHTDSKHVTKSFNFYVFPK 97 (507)
T ss_dssp HCSEEEEEEEESCSCC--------CBSCCHHHHHHHHHHHHTTBCEEEEEEEEEEECSSSSCEEEEEEEEEBCCC
T ss_pred cCCEEEEeeeccCcCCCCCccccccccCCHHHHHHHHHHHHHhcccceEEEEEEecCCCCCceeEEeEEEEecCc
Confidence 45799999999997531 1 124699999999885321 2246688887775
Done!