Query 023807
Match_columns 277
No_of_seqs 118 out of 249
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 06:48:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023807.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023807hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03094 Mlo: Mlo family; Int 100.0 3E-100 6E-105 747.1 22.3 242 6-271 1-247 (478)
2 PRK11677 hypothetical protein; 73.3 7.7 0.00017 33.3 5.1 44 15-62 2-45 (134)
3 PF06305 DUF1049: Protein of u 72.0 18 0.0004 26.1 6.3 47 16-62 18-64 (68)
4 PF07219 HemY_N: HemY protein 70.8 9.9 0.00021 30.5 5.0 46 12-57 13-65 (108)
5 COG1033 Predicted exporters of 64.4 16 0.00034 39.3 6.2 56 19-74 251-317 (727)
6 TIGR02976 phageshock_pspB phag 59.9 34 0.00074 26.6 5.9 29 15-43 3-31 (75)
7 TIGR03144 cytochr_II_ccsB cyto 57.7 50 0.0011 30.1 7.6 30 50-79 142-171 (243)
8 PF01578 Cytochrom_C_asm: Cyto 53.9 48 0.001 29.1 6.6 31 49-79 115-145 (214)
9 TIGR00540 hemY_coli hemY prote 48.7 31 0.00068 33.3 5.0 45 12-56 38-93 (409)
10 PF12801 Fer4_5: 4Fe-4S bindin 48.6 33 0.00072 23.3 3.8 25 14-38 1-25 (48)
11 PF15444 TMEM247: Transmembran 46.7 22 0.00048 32.5 3.4 24 167-190 193-217 (218)
12 COG3105 Uncharacterized protei 45.7 43 0.00094 29.0 4.8 61 14-78 6-75 (138)
13 PRK10747 putative protoheme IX 44.5 37 0.0008 32.8 4.8 37 12-48 38-81 (398)
14 PF11044 TMEMspv1-c74-12: Plec 43.5 57 0.0012 23.4 4.3 27 14-40 2-33 (49)
15 COG3071 HemY Uncharacterized e 42.9 41 0.00088 33.9 4.8 47 13-59 39-96 (400)
16 PF05568 ASFV_J13L: African sw 39.0 68 0.0015 28.5 5.1 45 11-57 21-65 (189)
17 TIGR00921 2A067 The (Largely A 35.7 1.5E+02 0.0032 30.8 7.8 56 17-72 620-685 (719)
18 PHA03105 EEV glycoprotein; Pro 35.1 43 0.00093 30.0 3.3 33 18-50 9-41 (188)
19 PF13297 Telomere_Sde2_2: Telo 33.6 22 0.00049 26.7 1.1 13 55-67 17-29 (60)
20 PF12273 RCR: Chitin synthesis 33.4 29 0.00064 28.7 1.9 17 16-32 2-18 (130)
21 PF14015 DUF4231: Protein of u 33.2 1.3E+02 0.0027 23.5 5.5 42 17-64 53-94 (112)
22 PRK02935 hypothetical protein; 31.5 1E+02 0.0023 25.8 4.8 42 14-73 13-54 (110)
23 KOG4484 Uncharacterized conser 29.5 1.1E+02 0.0023 27.8 4.9 36 32-67 91-130 (199)
24 PF15050 SCIMP: SCIMP protein 27.7 96 0.0021 26.7 4.0 31 16-48 9-39 (133)
25 PF03176 MMPL: MMPL family; I 27.5 97 0.0021 28.8 4.5 49 25-73 209-268 (333)
26 PF11742 DUF3302: Protein of u 27.5 2.5E+02 0.0054 22.2 6.1 34 34-74 21-54 (78)
27 PF11466 Doppel: Prion-like pr 27.5 54 0.0012 21.5 1.9 14 14-27 6-19 (30)
28 PF00664 ABC_membrane: ABC tra 25.5 2.2E+02 0.0048 23.6 5.9 27 15-41 140-166 (275)
29 PF06295 DUF1043: Protein of u 25.4 1.6E+02 0.0034 24.6 5.0 50 28-78 8-66 (128)
30 TIGR03480 HpnN hopanoid biosyn 25.2 2.5E+02 0.0055 30.3 7.6 56 20-75 325-391 (862)
31 COG3860 Uncharacterized protei 25.1 54 0.0012 26.4 2.0 22 238-264 54-75 (89)
32 KOG3643 GABA receptor [Signal 25.1 70 0.0015 32.8 3.2 26 19-44 309-334 (459)
33 PF15167 DUF4581: Domain of un 23.8 69 0.0015 27.2 2.5 28 39-66 67-95 (128)
34 TIGR01710 typeII_sec_gspG gene 22.6 2.5E+02 0.0054 23.3 5.6 40 22-61 9-48 (134)
35 PF07950 DUF1691: Protein of u 22.1 2.6E+02 0.0056 22.6 5.5 52 18-74 43-94 (110)
36 KOG4697 Integral membrane prot 21.8 1.5E+02 0.0033 26.2 4.2 43 147-190 43-93 (160)
37 PF14163 SieB: Superinfection 21.1 2.4E+02 0.0051 23.8 5.3 67 20-96 36-103 (151)
38 TIGR00921 2A067 The (Largely A 20.4 2.6E+02 0.0057 28.9 6.5 54 20-73 249-313 (719)
No 1
>PF03094 Mlo: Mlo family; InterPro: IPR004326 The Mlo-related proteins are a family of plant integral membrane proteins, first discovered in barley. Mutants lacking wild-type Mlo proteins show broad spectrum resistance to the powdery mildew fungus, and dysregulated cell death control, with spontaneous cell death in response to developmental or abiotic stimuli. Thus wild-type Mlo proteins are thought to be inhibitors of cell death whose deficiency lowers the threshold required to trigger the cascade of events that result in plant cell death. Mlo proteins are localized in the plasma membrane and possess seven transmembrane regions; thus the Mlo family is the only major higher plant family to possess 7 transmembrane domains. It has been suggested that Mlo proteins function as G-protein coupled receptors in plants []; however the molecular and biological functions of Mlo proteins is still unclear.; GO: 0008219 cell death, 0016021 integral to membrane
Probab=100.00 E-value=2.9e-100 Score=747.07 Aligned_cols=242 Identities=63% Similarity=1.037 Sum_probs=225.3
Q ss_pred CCCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 023807 6 GGRSLEETPTWAVAVVCFVLVTISIIIEHIIHLIGKWLTKKHKRALYEALEKIKSELMLLGFISLLLTVAGSWISKICIP 85 (277)
Q Consensus 6 ~~rsLe~TPTWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~rkaL~eALeKiKeELMLLGFISLLLtv~Q~~IskICIp 85 (277)
|+|+||+||||+||+||+|||+||+++||+||++||||+|++||+|+|||||||+|||||||||||||++|++|+|||||
T Consensus 1 e~rsLe~TptW~va~v~~v~v~is~~~E~~lh~l~~~l~~~~~k~L~~aLekik~ELMlLGfiSLlLt~~q~~IskICIp 80 (478)
T PF03094_consen 1 EGRSLEETPTWAVAVVCTVFVVISILLERGLHRLGKWLKKKKRKALYEALEKIKEELMLLGFISLLLTVFQNPISKICIP 80 (478)
T ss_pred CCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHeecC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCccccccccccchhhhhhhHHHHHHHHHhhcCcchhhhhhc--CCCcccCC-CCccccccccchhh
Q 023807 86 ESVANTWHPCDKEREPELNNEKETTEQETTEHENRRRLLEAVAASGGSIRRALAA--GSTTEKCS-KGKVPFVSEDGLHQ 162 (277)
Q Consensus 86 ~~~~~~~lPC~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~RRlla~--~~~~~~C~-~GkvplvS~egLhQ 162 (277)
++++++|+||+.+++..++ ++ ....||+|+. +.+.++|+ ||||||+|.|||||
T Consensus 81 ~~~~~~~lPC~~~~~~~~~---~~---------------------~~~~r~ll~~~~~~~~~~C~~kGkvpliS~egLHQ 136 (478)
T PF03094_consen 81 SSYASTMLPCKPPEESSKE---GS---------------------SHNRRRLLASGAAEGSDYCPKKGKVPLISAEGLHQ 136 (478)
T ss_pred hhHHhcccCCCCccccccc---cc---------------------chhhhhhhhhhcccccCcccccCccccccchhHHH
Confidence 9999999999965543321 00 1136777763 34567897 69999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh--hhHHHHHhhhccccccCCCCceeeeeeeecccccccCCCCCcchHHHHHHHH
Q 023807 163 LHIFIFVLALFHVLYSILTMALSRAK--KWKKWEKETRTIDYQFSHDPERFRFARETSFGRRHLSSWTKTPVLIWIVCFF 240 (277)
Q Consensus 163 LHiFIFVLAv~HV~ys~lTm~Lg~~K--~Wk~WE~e~~~~~~~~~~~p~~~r~~~qttF~r~h~~~ws~~~~l~Wi~cFf 240 (277)
||||||||||+||+|||+||+||++| +||+||+|+++++++..+||+|+|++||++|+|+|.++|++++++.|++|||
T Consensus 137 LHIFIFVLAV~HV~Ys~lTm~Lg~~KIr~Wk~WE~e~~~~~~~~~~d~~r~~~~~qt~F~r~h~~~w~~~~~~~wi~~Ff 216 (478)
T PF03094_consen 137 LHIFIFVLAVVHVLYSCLTMLLGRAKIRRWKKWEDEAQTDEYQFSNDPRRFRLTRQTTFVRRHTSFWSKSPVLSWIVCFF 216 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcceeeeecccHHHHhhcCCcccChhHHhHHHHH
Confidence 99999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCChhHHHHHHhhhhHhhhcCCCcce
Q 023807 241 RQFVRSVPKVDYLTLRHGFVTVIFLCFQSLA 271 (277)
Q Consensus 241 rQF~~SV~k~DYltLR~GFI~~H~~~~~~~~ 271 (277)
||||+||+|+||+|||+|||++|+++|+.|.
T Consensus 217 rQF~~SV~k~DYltLR~gFI~~H~~~~~~FD 247 (478)
T PF03094_consen 217 RQFYGSVTKSDYLTLRHGFITAHLLPNPKFD 247 (478)
T ss_pred HHhhccccHHHHHHHHHHHHHhhcCCCCCCC
Confidence 9999999999999999999999999988875
No 2
>PRK11677 hypothetical protein; Provisional
Probab=73.28 E-value=7.7 Score=33.26 Aligned_cols=44 Identities=36% Similarity=0.502 Sum_probs=28.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcchHHHHHHHHHHHHH
Q 023807 15 TWAVAVVCFVLVTISIIIEHIIHLIGKWLTKKHKRALYEALEKIKSEL 62 (277)
Q Consensus 15 TWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~rkaL~eALeKiKeEL 62 (277)
+|..|++++|+. +++=.++.++++.=. ++++.|-+-||+.|.||
T Consensus 2 ~W~~a~i~livG---~iiG~~~~R~~~~~~-~~q~~le~eLe~~k~el 45 (134)
T PRK11677 2 TWEYALIGLVVG---IIIGAVAMRFGNRKL-RQQQALQYELEKNKAEL 45 (134)
T ss_pred cHHHHHHHHHHH---HHHHHHHHhhccchh-hHHHHHHHHHHHHHHHH
Confidence 498888766553 333344444433211 35788999999999998
No 3
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=72.00 E-value=18 Score=26.15 Aligned_cols=47 Identities=15% Similarity=0.361 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcchHHHHHHHHHHHHH
Q 023807 16 WAVAVVCFVLVTISIIIEHIIHLIGKWLTKKHKRALYEALEKIKSEL 62 (277)
Q Consensus 16 WaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~rkaL~eALeKiKeEL 62 (277)
+-++++.++..++++++=-++.....+=.|++.+.+-..+++.+.|+
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~~~~~r~~~~~~~k~l~~le~e~ 64 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPSRLRLRRRIRRLRKELKKLEKEL 64 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777777776666656666678888899988886
No 4
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=70.84 E-value=9.9 Score=30.53 Aligned_cols=46 Identities=17% Similarity=0.535 Sum_probs=35.1
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHH-------HHhHhhhhcchHHHHHHHH
Q 023807 12 ETPTWAVAVVCFVLVTISIIIEHIIHL-------IGKWLTKKHKRALYEALEK 57 (277)
Q Consensus 12 ~TPTWaVA~Vc~v~V~iSl~~Er~lH~-------lgk~Lkk~~rkaL~eALeK 57 (277)
+|.-|...+++.+++++-.++.+++-. +.+|+++++++.-.+||++
T Consensus 13 e~sl~~~~~~l~~~~~~l~ll~~ll~~~~~~p~~~~~~~~~rr~~ka~~al~~ 65 (108)
T PF07219_consen 13 ETSLWVALILLLLLFVVLYLLLRLLRRLLSLPSRVRRWRRRRRRRKAQRALSR 65 (108)
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 466688888888888888888888765 5778888888777777764
No 5
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=64.43 E-value=16 Score=39.33 Aligned_cols=56 Identities=23% Similarity=0.371 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhcc-----hHHHHHHHHHHHHHH------HHHHHHHHHHH
Q 023807 19 AVVCFVLVTISIIIEHIIHLIGKWLTKKHK-----RALYEALEKIKSELM------LLGFISLLLTV 74 (277)
Q Consensus 19 A~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~r-----kaL~eALeKiKeELM------LLGFISLLLtv 74 (277)
.+..++.++|++.++.++|..-.+.+.+++ .|+.+|+.+...=++ .+||+||+.+-
T Consensus 251 ~s~~~~~llIgiGidy~vh~~nr~~ee~~~~~~~~eAv~~ai~~~g~avl~a~lTT~~GF~Sl~~s~ 317 (727)
T COG1033 251 TTSAVPPLLIGIGIDYGVHFHNRYEEERRKGRTVEEAVVEAIKHTGPAVLIAALTTAAGFLSLLTSS 317 (727)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHcc
Confidence 345567788899999999999999887764 577788887776655 37999988743
No 6
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=59.85 E-value=34 Score=26.61 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=23.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 023807 15 TWAVAVVCFVLVTISIIIEHIIHLIGKWL 43 (277)
Q Consensus 15 TWaVA~Vc~v~V~iSl~~Er~lH~lgk~L 43 (277)
.|.+++-.++|+++-..+.-.+||..||=
T Consensus 3 ~~fl~~Pliif~ifVap~wl~lHY~~k~~ 31 (75)
T TIGR02976 3 IFFLAIPLIIFVIFVAPLWLILHYRSKRK 31 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 36778888888888888999999997753
No 7
>TIGR03144 cytochr_II_ccsB cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction.
Probab=57.74 E-value=50 Score=30.11 Aligned_cols=30 Identities=20% Similarity=0.402 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 023807 50 ALYEALEKIKSELMLLGFISLLLTVAGSWI 79 (277)
Q Consensus 50 aL~eALeKiKeELMLLGFISLLLtv~Q~~I 79 (277)
|=.+.|||+--.....||+-|.++...+.|
T Consensus 142 p~L~~ld~l~~~~~~~Gf~~ltl~li~G~i 171 (243)
T TIGR03144 142 PLLETLDNLSYRTIAIGFPLLTIGIISGAV 171 (243)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557789999999999999999999887753
No 8
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=53.91 E-value=48 Score=29.12 Aligned_cols=31 Identities=32% Similarity=0.493 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 023807 49 RALYEALEKIKSELMLLGFISLLLTVAGSWI 79 (277)
Q Consensus 49 kaL~eALeKiKeELMLLGFISLLLtv~Q~~I 79 (277)
-|-.+.||++-.-++..||+-|.++..-+.+
T Consensus 115 lp~l~~le~~~~~~~~~gf~~lti~l~~G~~ 145 (214)
T PF01578_consen 115 LPSLETLERLSYRLILIGFILLTIGLITGAI 145 (214)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 3557889999999999999999998887765
No 9
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=48.68 E-value=31 Score=33.30 Aligned_cols=45 Identities=18% Similarity=0.293 Sum_probs=28.9
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHH-------HHHhHhhhhcc----hHHHHHHH
Q 023807 12 ETPTWAVAVVCFVLVTISIIIEHIIH-------LIGKWLTKKHK----RALYEALE 56 (277)
Q Consensus 12 ~TPTWaVA~Vc~v~V~iSl~~Er~lH-------~lgk~Lkk~~r----kaL~eALe 56 (277)
+|+=|+..++..+++++.+++++++. .+..|+.++++ +++.+++-
T Consensus 38 e~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~r~~~k~~~~~~~gll 93 (409)
T TIGR00540 38 EMSITGLAIFFIIALAIIFAFEWGLRRFFRLGAHSRGWFSGRKRRKAQKQTEEALL 93 (409)
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667766666666666778889884 45568777553 44444443
No 10
>PF12801 Fer4_5: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=48.62 E-value=33 Score=23.29 Aligned_cols=25 Identities=8% Similarity=0.093 Sum_probs=17.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHH
Q 023807 14 PTWAVAVVCFVLVTISIIIEHIIHL 38 (277)
Q Consensus 14 PTWaVA~Vc~v~V~iSl~~Er~lH~ 38 (277)
|.|...+...++++++++..|.--.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~r~~C~ 25 (48)
T PF12801_consen 1 MAWFWLIGFIGFLLLSLFFGRAWCG 25 (48)
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHh
Confidence 3455666666888899999885433
No 11
>PF15444 TMEM247: Transmembrane protein 247
Probab=46.70 E-value=22 Score=32.45 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh-hh
Q 023807 167 IFVLALFHVLYSILTMALSRAK-KW 190 (277)
Q Consensus 167 IFVLAv~HV~ys~lTm~Lg~~K-~W 190 (277)
||+|-.-|-+||+.+++|..+| =|
T Consensus 193 vfflfskhylfciaaillcliktlw 217 (218)
T PF15444_consen 193 VFFLFSKHYLFCIAAILLCLIKTLW 217 (218)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhc
Confidence 4566667888999999999999 66
No 12
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.67 E-value=43 Score=29.00 Aligned_cols=61 Identities=31% Similarity=0.434 Sum_probs=36.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcchHHHHHHHHHHHHHH---------HHHHHHHHHHHhhhc
Q 023807 14 PTWAVAVVCFVLVTISIIIEHIIHLIGKWLTKKHKRALYEALEKIKSELM---------LLGFISLLLTVAGSW 78 (277)
Q Consensus 14 PTWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~rkaL~eALeKiKeELM---------LLGFISLLLtv~Q~~ 78 (277)
-+|..|.+-+| |++++-.++-+|++-=- ++|+.+-.-|||+|.+|= .----+||=|..|+|
T Consensus 6 ~~W~~a~igLv---vGi~IG~li~Rlt~~~~-k~q~~~q~ELe~~K~~ld~~rqel~~HFa~sAeLlktl~~dY 75 (138)
T COG3105 6 MTWEYALIGLV---VGIIIGALIARLTNRKL-KQQQKLQYELEKVKAQLDEYRQELVKHFARSAELLKTLAQDY 75 (138)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHcchhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888776544 34444444455544222 235678888999988763 223456777777776
No 13
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=44.50 E-value=37 Score=32.81 Aligned_cols=37 Identities=16% Similarity=0.416 Sum_probs=27.8
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHH-------HHhHhhhhcc
Q 023807 12 ETPTWAVAVVCFVLVTISIIIEHIIHL-------IGKWLTKKHK 48 (277)
Q Consensus 12 ~TPTWaVA~Vc~v~V~iSl~~Er~lH~-------lgk~Lkk~~r 48 (277)
+|+=|..++++.+++++.+++.+++.+ +..|+.++|+
T Consensus 38 e~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~rr~ 81 (398)
T PRK10747 38 ETSVTGLAIILILAMVVLFAIEWLLRRIFRTGARTRGWFVGRKR 81 (398)
T ss_pred EehHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHH
Confidence 567788888888888888888998854 4578777554
No 14
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=43.45 E-value=57 Score=23.45 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=12.6
Q ss_pred CchhHH-----HHHHHHHHHHHHHHHHHHHHH
Q 023807 14 PTWAVA-----VVCFVLVTISIIIEHIIHLIG 40 (277)
Q Consensus 14 PTWaVA-----~Vc~v~V~iSl~~Er~lH~lg 40 (277)
|||.-- .+..+|.-+.+.+=.-+..+.
T Consensus 2 p~wlt~iFsvvIil~If~~iGl~IyQkikqIr 33 (49)
T PF11044_consen 2 PTWLTTIFSVVIILGIFAWIGLSIYQKIKQIR 33 (49)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888532 222333334455555555443
No 15
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=42.93 E-value=41 Score=33.86 Aligned_cols=47 Identities=15% Similarity=0.400 Sum_probs=35.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHH-------hHhhhhc----chHHHHHHHHHH
Q 023807 13 TPTWAVAVVCFVLVTISIIIEHIIHLIG-------KWLTKKH----KRALYEALEKIK 59 (277)
Q Consensus 13 TPTWaVA~Vc~v~V~iSl~~Er~lH~lg-------k~Lkk~~----rkaL~eALeKiK 59 (277)
+.-|.+++..++.++|-+++|.+++++. .|+..+| ++++.|+|.|+-
T Consensus 39 ~Sl~~lv~~~ii~lvv~~~l~~~l~~v~~~~~~~~~w~~~rKrrra~~~~~egl~~l~ 96 (400)
T COG3071 39 MSLTTLVIFLIIALVVLYLLEWLLRRVLRTPAHTRGWFSRRKRRRARKALNEGLLKLF 96 (400)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3446777777777888899999999875 4887444 578899998874
No 16
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=38.96 E-value=68 Score=28.54 Aligned_cols=45 Identities=22% Similarity=0.369 Sum_probs=29.8
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcchHHHHHHHH
Q 023807 11 EETPTWAVAVVCFVLVTISIIIEHIIHLIGKWLTKKHKRALYEALEK 57 (277)
Q Consensus 11 e~TPTWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~rkaL~eALeK 57 (277)
--+|..--.-.|++++.|-+++--++ -|--|+.++|||+. .|+++
T Consensus 21 ~~~psffsthm~tILiaIvVliiiii-vli~lcssRKkKaa-AAi~e 65 (189)
T PF05568_consen 21 VTPPSFFSTHMYTILIAIVVLIIIII-VLIYLCSSRKKKAA-AAIEE 65 (189)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhHHHH-hhhhh
Confidence 34677777777777776665554333 44567888888887 66664
No 17
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=35.71 E-value=1.5e+02 Score=30.79 Aligned_cols=56 Identities=23% Similarity=0.446 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc----chHHHHHHHHHHHHH------HHHHHHHHHH
Q 023807 17 AVAVVCFVLVTISIIIEHIIHLIGKWLTKKH----KRALYEALEKIKSEL------MLLGFISLLL 72 (277)
Q Consensus 17 aVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~----rkaL~eALeKiKeEL------MLLGFISLLL 72 (277)
.+..+....+++++.++..+|.+.+|.++++ +.++.+|+.+.=.=+ +.+||.+|++
T Consensus 620 ~~~~~~~~~i~lGigvDy~i~~~~r~~~~~~~~~~~~ai~~a~~~~g~ai~~s~lt~~~gf~~l~~ 685 (719)
T TIGR00921 620 FLAMATTISIILGLGMDYSIHLAERYFEERKEHGPKEAITHTMERTGPGILFSGLTTAGGFLSLLL 685 (719)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 3455566678889999999999999987654 356777777665533 3456666655
No 18
>PHA03105 EEV glycoprotein; Provisional
Probab=35.12 E-value=43 Score=30.04 Aligned_cols=33 Identities=30% Similarity=0.251 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhcchH
Q 023807 18 VAVVCFVLVTISIIIEHIIHLIGKWLTKKHKRA 50 (277)
Q Consensus 18 VA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~rka 50 (277)
+.++|+.++++..++=-.-|.+-|+|+|+++|+
T Consensus 9 ~vv~~SfiiLi~Yll~i~K~~iKKflkkkk~K~ 41 (188)
T PHA03105 9 VVVPLSFIVLILYIFFICKNTIKKFLKKKKGKN 41 (188)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 346788888888888888899999999888765
No 19
>PF13297 Telomere_Sde2_2: Telomere stability C-terminal
Probab=33.59 E-value=22 Score=26.74 Aligned_cols=13 Identities=54% Similarity=0.956 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHH
Q 023807 55 LEKIKSELMLLGF 67 (277)
Q Consensus 55 LeKiKeELMLLGF 67 (277)
||++|+|||-+|.
T Consensus 17 ldrLK~~L~a~GL 29 (60)
T PF13297_consen 17 LDRLKSALMALGL 29 (60)
T ss_pred HHHHHHHHHHcCC
Confidence 6899999999984
No 20
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=33.36 E-value=29 Score=28.70 Aligned_cols=17 Identities=12% Similarity=0.540 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHHH
Q 023807 16 WAVAVVCFVLVTISIII 32 (277)
Q Consensus 16 WaVA~Vc~v~V~iSl~~ 32 (277)
|++++|++++++|.|++
T Consensus 2 W~l~~iii~~i~l~~~~ 18 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFL 18 (130)
T ss_pred eeeHHHHHHHHHHHHHH
Confidence 77777766666665554
No 21
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=33.16 E-value=1.3e+02 Score=23.53 Aligned_cols=42 Identities=21% Similarity=0.356 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcchHHHHHHHHHHHHHHH
Q 023807 17 AVAVVCFVLVTISIIIEHIIHLIGKWLTKKHKRALYEALEKIKSELML 64 (277)
Q Consensus 17 aVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~rkaL~eALeKiKeELML 64 (277)
.+++++.+++++.-.+...-..=.+|.+.+ .+.|.+|.|.++
T Consensus 53 ~~~~~l~~~~~~~~~~~~~~~~~~~W~~~r------~tae~lk~e~~~ 94 (112)
T PF14015_consen 53 LVAAILSALAAILASLAAFFRFHERWIRYR------ATAESLKREKWL 94 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHH------HHHHHHHHHHHH
Confidence 344466677777777777777777777664 355666666653
No 22
>PRK02935 hypothetical protein; Provisional
Probab=31.47 E-value=1e+02 Score=25.77 Aligned_cols=42 Identities=21% Similarity=0.547 Sum_probs=25.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 023807 14 PTWAVAVVCFVLVTISIIIEHIIHLIGKWLTKKHKRALYEALEKIKSELMLLGFISLLLT 73 (277)
Q Consensus 14 PTWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~rkaL~eALeKiKeELMLLGFISLLLt 73 (277)
-|||+..|..-|+ +-|+|-+++.. ..+ -.=.|++||++++.+
T Consensus 13 Rt~aL~lvfiG~~---------vMy~Giff~~~---~~~------m~ifm~~G~l~~l~S 54 (110)
T PRK02935 13 RTFALSLVFIGFI---------VMYLGIFFRES---III------MTIFMLLGFLAVIAS 54 (110)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHhccc---HHH------HHHHHHHHHHHHHHH
Confidence 4788776654443 34666666322 233 334799999998854
No 23
>KOG4484 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.52 E-value=1.1e+02 Score=27.84 Aligned_cols=36 Identities=22% Similarity=0.383 Sum_probs=30.2
Q ss_pred HHHHHHHHHhHhhhhc----chHHHHHHHHHHHHHHHHHH
Q 023807 32 IEHIIHLIGKWLTKKH----KRALYEALEKIKSELMLLGF 67 (277)
Q Consensus 32 ~Er~lH~lgk~Lkk~~----rkaL~eALeKiKeELMLLGF 67 (277)
+||.|.+|.|-++... .+.+-+-|.|.|++||..-|
T Consensus 91 aeR~irrLeK~~keS~ad~kd~~i~~qlrk~kidL~YVr~ 130 (199)
T KOG4484|consen 91 AERSIRRLEKLIKESGADVKDKQIQQQLRKLKIDLEYVRF 130 (199)
T ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHh
Confidence 6889999988888543 56799999999999999765
No 24
>PF15050 SCIMP: SCIMP protein
Probab=27.75 E-value=96 Score=26.66 Aligned_cols=31 Identities=19% Similarity=0.642 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q 023807 16 WAVAVVCFVLVTISIIIEHIIHLIGKWLTKKHK 48 (277)
Q Consensus 16 WaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~r 48 (277)
|.+-+|. ||+||+.+--+|--+-+|+-|+.|
T Consensus 9 WiiLAVa--II~vS~~lglIlyCvcR~~lRqGk 39 (133)
T PF15050_consen 9 WIILAVA--IILVSVVLGLILYCVCRWQLRQGK 39 (133)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHccc
Confidence 7776666 555666666677777777777664
No 25
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=27.54 E-value=97 Score=28.82 Aligned_cols=49 Identities=27% Similarity=0.423 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhc-----chHHHHHHHHHHHH------HHHHHHHHHHHH
Q 023807 25 LVTISIIIEHIIHLIGKWLTKKH-----KRALYEALEKIKSE------LMLLGFISLLLT 73 (277)
Q Consensus 25 ~V~iSl~~Er~lH~lgk~Lkk~~-----rkaL~eALeKiKeE------LMLLGFISLLLt 73 (277)
.+++++.++.++|.+.+|-.+.+ +.++.+|+.++-.= -+..||.||+++
T Consensus 209 ~l~lgvgidy~i~l~~r~ree~~~g~~~~~ai~~a~~~~g~~i~~s~ltt~~gf~~L~~s 268 (333)
T PF03176_consen 209 VLLLGVGIDYSIHLINRYREELRRGMSRKEAIRRAVRSTGRAILLSALTTAIGFGSLLFS 268 (333)
T ss_pred hhHHHhhhhhHHHHHHHHHHHHHhccchHHHHHHHHhccCchhHHHHHHHHHHHHHHHHh
Confidence 45678888999998877654432 24566666654433 467889998884
No 26
>PF11742 DUF3302: Protein of unknown function (DUF3302); InterPro: IPR011223 This is a family of uncharacterised bacterial proteins, restricted to the Gammaproteobacteria.
Probab=27.52 E-value=2.5e+02 Score=22.17 Aligned_cols=34 Identities=26% Similarity=0.364 Sum_probs=26.6
Q ss_pred HHHHHHHhHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023807 34 HIIHLIGKWLTKKHKRALYEALEKIKSELMLLGFISLLLTV 74 (277)
Q Consensus 34 r~lH~lgk~Lkk~~rkaL~eALeKiKeELMLLGFISLLLtv 74 (277)
=.+|-+=.-.-+||+.|=.||.. .+|-+||+...
T Consensus 21 ~~lh~lP~~iA~kr~Hpq~eaI~-------v~gwisLft~~ 54 (78)
T PF11742_consen 21 WKLHDLPGKIAHKRNHPQAEAIH-------VLGWISLFTLH 54 (78)
T ss_pred HHHHhhHHHHHHhcCCchHHHHH-------HHHHHHHHHHH
Confidence 46787877788888889888875 68999987643
No 27
>PF11466 Doppel: Prion-like protein Doppel; InterPro: IPR021566 Dpl is a homologue related to the prion protein (PrP). Dpl is toxic to neurons and is expressed in the brains of mice that do not express PrP. In DHPC and SDS micelles, Dpl shoes about 40% alpha-helical structure however in aqueous solution it consists of a random coil. The alpha helical segment can adopt a transmembrane localisation also in a membrane. The unprocessed Dpl protein is thought to posses a possible channel formation mechanism which may be related to toxicity through direct interaction with cell membranes and damage to the cell membrane. ; PDB: 1Z65_A.
Probab=27.51 E-value=54 Score=21.55 Aligned_cols=14 Identities=36% Similarity=0.895 Sum_probs=11.3
Q ss_pred CchhHHHHHHHHHH
Q 023807 14 PTWAVAVVCFVLVT 27 (277)
Q Consensus 14 PTWaVA~Vc~v~V~ 27 (277)
-+|.+|+||..+..
T Consensus 6 g~~~lAi~c~LL~s 19 (30)
T PF11466_consen 6 GGWWLAIVCVLLFS 19 (30)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 47999999987753
No 28
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=25.48 E-value=2.2e+02 Score=23.62 Aligned_cols=27 Identities=15% Similarity=0.496 Sum_probs=15.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHh
Q 023807 15 TWAVAVVCFVLVTISIIIEHIIHLIGK 41 (277)
Q Consensus 15 TWaVA~Vc~v~V~iSl~~Er~lH~lgk 41 (277)
.|.++.++.+++.+.+++-..+.+..+
T Consensus 140 ~~~l~l~~l~~~~~~~~~~~~~~~~~~ 166 (275)
T PF00664_consen 140 SWKLALILLIILPLLFLISFIFSKKIR 166 (275)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhhhhHhhhhhhccccc
Confidence 366666666666666665555444433
No 29
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.39 E-value=1.6e+02 Score=24.64 Aligned_cols=50 Identities=22% Similarity=0.285 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhHhhhhcchHHHHHHHHHHHHHH---------HHHHHHHHHHHhhhc
Q 023807 28 ISIIIEHIIHLIGKWLTKKHKRALYEALEKIKSELM---------LLGFISLLLTVAGSW 78 (277)
Q Consensus 28 iSl~~Er~lH~lgk~Lkk~~rkaL~eALeKiKeELM---------LLGFISLLLtv~Q~~ 78 (277)
|.+++=.++.++++-=. ++++.|-+.|++.|+||= +-.-.-||=...+++
T Consensus 8 vG~iiG~~~~r~~~~~~-~~q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y 66 (128)
T PF06295_consen 8 VGLIIGFLIGRLTSSNQ-QKQAKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDY 66 (128)
T ss_pred HHHHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455533211 335789999999999983 455555666666554
No 30
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=25.21 E-value=2.5e+02 Score=30.26 Aligned_cols=56 Identities=23% Similarity=0.406 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhh-----cchHHHHHHHHHHHHHH------HHHHHHHHHHHh
Q 023807 20 VVCFVLVTISIIIEHIIHLIGKWLTKK-----HKRALYEALEKIKSELM------LLGFISLLLTVA 75 (277)
Q Consensus 20 ~Vc~v~V~iSl~~Er~lH~lgk~Lkk~-----~rkaL~eALeKiKeELM------LLGFISLLLtv~ 75 (277)
++.+.++++.+.++.++|.+..+.++. +++++.+|+.++-.=++ .+||++|+.+-+
T Consensus 325 s~~~~~lliGi~vD~~I~~~~r~~e~~~~g~~~~~A~~~a~~~~~~~i~~s~lTt~~gf~~l~~~~~ 391 (862)
T TIGR03480 325 SVAFAVLFIGLGVDFAIQFSLRYREERFRGGNHREALSVAARRMGAALLLAALATAAGFFAFLPTDY 391 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 444556678999999999998887653 23566666666554443 468887777643
No 31
>COG3860 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.15 E-value=54 Score=26.43 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=17.9
Q ss_pred HHHHhhcCCCChhHHHHHHhhhhHhhh
Q 023807 238 CFFRQFVRSVPKVDYLTLRHGFVTVIF 264 (277)
Q Consensus 238 cFfrQF~~SV~k~DYltLR~GFI~~H~ 264 (277)
-..+||+ .||-|+|.-||+.-+
T Consensus 54 ~ii~ryh-----~DyaTvRReli~~~f 75 (89)
T COG3860 54 LIIKRYH-----PDYATVRRELIEYGF 75 (89)
T ss_pred HHHHHhC-----chHHHHHHHHHHcch
Confidence 3467787 899999999998744
No 32
>KOG3643 consensus GABA receptor [Signal transduction mechanisms]
Probab=25.12 E-value=70 Score=32.76 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhh
Q 023807 19 AVVCFVLVTISIIIEHIIHLIGKWLT 44 (277)
Q Consensus 19 A~Vc~v~V~iSl~~Er~lH~lgk~Lk 44 (277)
-.||+|||.+|++==...||+.+..+
T Consensus 309 L~vCFvfVF~sLLEYA~V~Y~~~~~~ 334 (459)
T KOG3643|consen 309 LGVCFVFVFLSLLEYAAVNYMFKRRG 334 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 35999999999988888899987663
No 33
>PF15167 DUF4581: Domain of unknown function (DUF4581)
Probab=23.77 E-value=69 Score=27.16 Aligned_cols=28 Identities=32% Similarity=0.494 Sum_probs=20.7
Q ss_pred HHhHhhhhcchHHHHHHHHHHHHH-HHHH
Q 023807 39 IGKWLTKKHKRALYEALEKIKSEL-MLLG 66 (277)
Q Consensus 39 lgk~Lkk~~rkaL~eALeKiKeEL-MLLG 66 (277)
.-.|...-.||.|.+.||||+.-+ ||||
T Consensus 67 aqdyisscGKk~l~e~leKvf~sf~pllg 95 (128)
T PF15167_consen 67 AQDYISSCGKKTLTESLEKVFKSFRPLLG 95 (128)
T ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhccC
Confidence 345556677788999999998765 4555
No 34
>TIGR01710 typeII_sec_gspG general secretion pathway protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=22.59 E-value=2.5e+02 Score=23.27 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhcchHHHHHHHHHHHH
Q 023807 22 CFVLVTISIIIEHIIHLIGKWLTKKHKRALYEALEKIKSE 61 (277)
Q Consensus 22 c~v~V~iSl~~Er~lH~lgk~Lkk~~rkaL~eALeKiKeE 61 (277)
..|+++|++++==++-.+....++.+.+.....+..++..
T Consensus 9 livlaIigil~~i~~p~~~~~~~~a~~~~~~~~l~~i~~a 48 (134)
T TIGR01710 9 MVVLVILGLLAALVAPKLFSQADKAKAQVAKAQIKALKNA 48 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555544555555566666655555555555443
No 35
>PF07950 DUF1691: Protein of unknown function (DUF1691); InterPro: IPR012472 This family of fungal proteins is uncharacterised. Each protein contains two copies of this region.
Probab=22.08 E-value=2.6e+02 Score=22.60 Aligned_cols=52 Identities=15% Similarity=0.255 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023807 18 VAVVCFVLVTISIIIEHIIHLIGKWLTKKHKRALYEALEKIKSELMLLGFISLLLTV 74 (277)
Q Consensus 18 VA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~rkaL~eALeKiKeELMLLGFISLLLtv 74 (277)
++..+.+-+..-=++-...-+++++-+++||+.-. ....+..+|++||.+.=
T Consensus 43 ~~~~~Lv~~~~~Hv~sG~a~~~~~~~~~~rr~~~~-----~~~~~~~iG~~sl~~~g 94 (110)
T PF07950_consen 43 LEYLLLVGSGVYHVVSGIALRLGRRSRRRRRRGWW-----VINGQSAIGLISLWRLG 94 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-----ccchhHHHHHHHHHHhc
Confidence 44444444444445555555565554444443322 22788899999987743
No 36
>KOG4697 consensus Integral membrane protein involved in transport between the late Golgi and endosome [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.82 E-value=1.5e+02 Score=26.15 Aligned_cols=43 Identities=21% Similarity=0.179 Sum_probs=30.6
Q ss_pred CC-CCccccccccchhh------HHHHHHHHHHHHHHHHHHHHHHhhhh-hh
Q 023807 147 CS-KGKVPFVSEDGLHQ------LHIFIFVLALFHVLYSILTMALSRAK-KW 190 (277)
Q Consensus 147 C~-~GkvplvS~egLhQ------LHiFIFVLAv~HV~ys~lTm~Lg~~K-~W 190 (277)
|. .|++|++|.|.+|- +=+-.|||-.+=+.+ ++|.+.||+| -|
T Consensus 43 ~d~~~~e~Lfs~~~I~~~~~~g~~i~~~~vl~a~~~sf-aL~~iV~RaKKOG 93 (160)
T KOG4697|consen 43 YDLNIKEWLFSWENIDFTNAYGLSISLLWVLDALICSF-ALTVIVGRAKLCL 93 (160)
T ss_pred hhhcchhhhcccceeeeeecccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 54 69999999998874 335567773332322 7889999999 55
No 37
>PF14163 SieB: Superinfection exclusion protein B
Probab=21.07 E-value=2.4e+02 Score=23.75 Aligned_cols=67 Identities=15% Similarity=0.165 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhh-cchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCC
Q 023807 20 VVCFVLVTISIIIEHIIHLIGKWLTKK-HKRALYEALEKIKSELMLLGFISLLLTVAGSWISKICIPESVANTWHPCD 96 (277)
Q Consensus 20 ~Vc~v~V~iSl~~Er~lH~lgk~Lkk~-~rkaL~eALeKiKeELMLLGFISLLLtv~Q~~IskICIp~~~~~~~lPC~ 96 (277)
+...+++.+|+++=+.+.++-++.+++ ++|...++++|.=+ .||--|..|-+-.+-++-..-.+|+.
T Consensus 36 i~~~fl~s~s~li~~~~~~~~~~~~~~~~~k~~~~~~~~~l~----------~Lt~~EkavL~~~~~~~~~~~~lp~~ 103 (151)
T PF14163_consen 36 IGLIFLFSVSYLIAQLLSFIYKEAKDRYQRKRKKKKIEKKLN----------SLTPEEKAVLREFYIQGNNTLTLPYN 103 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hCCHHHHHHHHHHHHCCCCeEEecCC
Confidence 344556667777777777776664433 23444455555411 12333444444444444333466663
No 38
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=20.35 E-value=2.6e+02 Score=28.91 Aligned_cols=54 Identities=19% Similarity=0.289 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhc-----chHHHHHHHHHHHHH------HHHHHHHHHHH
Q 023807 20 VVCFVLVTISIIIEHIIHLIGKWLTKKH-----KRALYEALEKIKSEL------MLLGFISLLLT 73 (277)
Q Consensus 20 ~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~-----rkaL~eALeKiKeEL------MLLGFISLLLt 73 (277)
++....+++++.++.++|.+..|.++++ ++++.+|+++.-.=+ ..+||.+|+++
T Consensus 249 ~~~~~~l~lgi~vd~~ihl~~r~~~~~~~g~~~~~ai~~a~~~~g~~i~~t~~t~~~gf~~l~~s 313 (719)
T TIGR00921 249 TLLAVPMLIGVGIDYGIQTLNRYEEERDIGRAKGEAIVTAVRRTGRAVLIALLTTSAGFAALALS 313 (719)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhc
Confidence 3445555678899999999998875432 467777777665544 34688888765
Done!