Query 023807
Match_columns 277
No_of_seqs 118 out of 249
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 13:07:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023807.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023807hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l8s_A Integrin alpha-1; trans 67.9 8.5 0.00029 27.3 4.7 43 11-56 5-48 (54)
2 2knc_A Integrin alpha-IIB; tra 63.1 16 0.00056 25.8 5.4 37 11-48 8-44 (54)
3 2k1a_A Integrin alpha-IIB; sin 59.8 13 0.00045 25.0 4.2 36 11-47 6-41 (42)
4 1rh4_A Right-handed coiled coi 30.1 34 0.0012 21.8 2.3 16 47-62 18-33 (35)
5 2uwj_E Type III export protein 28.8 29 0.00099 25.8 2.1 33 32-64 8-40 (70)
6 2jwa_A Receptor tyrosine-prote 26.5 54 0.0019 22.2 3.0 30 15-49 12-41 (44)
7 1uii_A Geminin; human, DNA rep 23.8 56 0.0019 25.0 2.9 15 42-56 32-46 (83)
8 1wlq_A Geminin; coiled-coil; 2 21.7 65 0.0022 24.7 2.9 14 43-56 25-38 (83)
9 3sok_A Fimbrial protein; pilus 20.9 1.7E+02 0.0059 23.3 5.7 42 21-62 6-47 (151)
10 1zke_A Hypothetical protein HP 20.7 15 0.00052 28.0 -0.8 18 49-66 65-82 (83)
11 2knc_B Integrin beta-3; transm 20.5 1.2E+02 0.0042 22.4 4.3 20 189-208 43-62 (79)
No 1
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=67.85 E-value=8.5 Score=27.34 Aligned_cols=43 Identities=21% Similarity=0.400 Sum_probs=21.4
Q ss_pred ccCCchhHHH-HHHHHHHHHHHHHHHHHHHHhHhhhhcchHHHHHHH
Q 023807 11 EETPTWAVAV-VCFVLVTISIIIEHIIHLIGKWLTKKHKRALYEALE 56 (277)
Q Consensus 11 e~TPTWaVA~-Vc~v~V~iSl~~Er~lH~lgk~Lkk~~rkaL~eALe 56 (277)
+..|.|.+.+ |+.-+++++ ++=-++-++| +|||+++ +..+.||
T Consensus 5 ~~vp~WiIi~svl~GLLLL~-Lii~~LwK~G-FFKR~~~-~~~~~~~ 48 (54)
T 2l8s_A 5 GRVPLWVILLSAFAGLLLLM-LLILALWKIG-FFKRPLK-KKMEKLE 48 (54)
T ss_dssp CCCCTHHHHHHHHHHHHHHH-HHHHHHHHHH-HTTSCCS-CCCCC--
T ss_pred ccCchHHHHHHHHHHHHHHH-HHHHHHHHcC-cccCCCc-chhhHHh
Confidence 3589996432 222222222 3334666776 7777664 3344443
No 2
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=63.06 E-value=16 Score=25.79 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=20.9
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q 023807 11 EETPTWAVAVVCFVLVTISIIIEHIIHLIGKWLTKKHK 48 (277)
Q Consensus 11 e~TPTWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~r 48 (277)
+..|.|.+.+-...-+++-.++=-++.++| +|||+++
T Consensus 8 ~~vp~wiIi~svl~GLllL~li~~~LwK~G-FFkR~~~ 44 (54)
T 2knc_A 8 RAIPIWWVLVGVLGGLLLLTILVLAMWKVG-FFKRNRP 44 (54)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTTCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCCC
Confidence 358999644333323333333445677776 7777764
No 3
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=59.77 E-value=13 Score=24.99 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=18.9
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q 023807 11 EETPTWAVAVVCFVLVTISIIIEHIIHLIGKWLTKKH 47 (277)
Q Consensus 11 e~TPTWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~ 47 (277)
+..|.|.+.+-...-+++-.++=-++.++| +|||++
T Consensus 6 ~~vp~wiIi~s~l~GLllL~li~~~LwK~G-FFkR~~ 41 (42)
T 2k1a_A 6 RAIPIWWVLVGVLGGLLLLTILVLAMWKVG-FFKRNR 41 (42)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHTT-TTCCCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCC
Confidence 358999643332222222233345666776 666654
No 4
>1rh4_A Right-handed coiled coil tetramer; de novo design; 1.90A {Synthetic construct} SCOP: k.17.1.1
Probab=30.08 E-value=34 Score=21.75 Aligned_cols=16 Identities=44% Similarity=0.580 Sum_probs=12.7
Q ss_pred cchHHHHHHHHHHHHH
Q 023807 47 HKRALYEALEKIKSEL 62 (277)
Q Consensus 47 ~rkaL~eALeKiKeEL 62 (277)
-+-..+.||.|||.|+
T Consensus 18 ikaeilaalkkikqei 33 (35)
T 1rh4_A 18 IKAEILAALKKIKQEI 33 (35)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3557888999999885
No 5
>2uwj_E Type III export protein PSCE; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=28.80 E-value=29 Score=25.84 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=24.2
Q ss_pred HHHHHHHHHhHhhhhcchHHHHHHHHHHHHHHH
Q 023807 32 IEHIIHLIGKWLTKKHKRALYEALEKIKSELML 64 (277)
Q Consensus 32 ~Er~lH~lgk~Lkk~~rkaL~eALeKiKeELML 64 (277)
+|..|+-.+.-..+.=+..|..||-++|.+|++
T Consensus 8 LE~~L~~~~~~~~~~i~~~L~qAl~~vKrqL~~ 40 (70)
T 2uwj_E 8 LETRLSVADGTHAAALRQRLQAALAECRRELAR 40 (70)
T ss_dssp HHHHHTSSSTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455565555555555567799999999999985
No 6
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=26.52 E-value=54 Score=22.21 Aligned_cols=30 Identities=13% Similarity=0.374 Sum_probs=15.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcch
Q 023807 15 TWAVAVVCFVLVTISIIIEHIIHLIGKWLTKKHKR 49 (277)
Q Consensus 15 TWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~rk 49 (277)
|++.|.|..+++++-+.+ -++=|++|++++
T Consensus 12 ~~Ia~~vVGvll~vi~~l-----~~~~~~RRR~~~ 41 (44)
T 2jwa_A 12 TSIISAVVGILLVVVLGV-----VFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHHHHCSC
T ss_pred cchHHHHHHHHHHHHHHH-----HHHhheehhhhh
Confidence 456666665443332222 235577777653
No 7
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=23.77 E-value=56 Score=25.02 Aligned_cols=15 Identities=47% Similarity=0.753 Sum_probs=10.6
Q ss_pred HhhhhcchHHHHHHH
Q 023807 42 WLTKKHKRALYEALE 56 (277)
Q Consensus 42 ~Lkk~~rkaL~eALe 56 (277)
-+-.++|+||.+||+
T Consensus 32 ~lAE~RR~AL~eaL~ 46 (83)
T 1uii_A 32 EVAEKRRKALYEALK 46 (83)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345667788888876
No 8
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=21.69 E-value=65 Score=24.65 Aligned_cols=14 Identities=43% Similarity=0.869 Sum_probs=10.2
Q ss_pred hhhhcchHHHHHHH
Q 023807 43 LTKKHKRALYEALE 56 (277)
Q Consensus 43 Lkk~~rkaL~eALe 56 (277)
+-.++|+||.+||+
T Consensus 25 lAE~Rr~AL~eaL~ 38 (83)
T 1wlq_A 25 VAEQRRKALYEALK 38 (83)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45667788888886
No 9
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=20.91 E-value=1.7e+02 Score=23.30 Aligned_cols=42 Identities=12% Similarity=0.251 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhcchHHHHHHHHHHHHH
Q 023807 21 VCFVLVTISIIIEHIIHLIGKWLTKKHKRALYEALEKIKSEL 62 (277)
Q Consensus 21 Vc~v~V~iSl~~Er~lH~lgk~Lkk~~rkaL~eALeKiKeEL 62 (277)
+..|+++|+|+.==.+-.+..+.++.+++.....+..++..+
T Consensus 6 llvviaIigiLaaia~p~~~~~~~~~~~~~~~~~~~~~~~a~ 47 (151)
T 3sok_A 6 LMIVVAIIGILAAFAIPAYNDYIARSQAAEGLTLADGLKVRI 47 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777788888888877665555555555443
No 10
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=20.70 E-value=15 Score=28.00 Aligned_cols=18 Identities=44% Similarity=0.761 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 023807 49 RALYEALEKIKSELMLLG 66 (277)
Q Consensus 49 kaL~eALeKiKeELMLLG 66 (277)
|....||.|+|.|+.+.|
T Consensus 65 Ke~IdaLNK~Kke~lv~~ 82 (83)
T 1zke_A 65 KELINALNKIKKGLLVFG 82 (83)
T ss_dssp HHHHHHHHHHHGGGCSTT
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 578899999999987654
No 11
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=20.48 E-value=1.2e+02 Score=22.43 Aligned_cols=20 Identities=20% Similarity=0.554 Sum_probs=14.4
Q ss_pred hhHHHHHhhhccccccCCCC
Q 023807 189 KWKKWEKETRTIDYQFSHDP 208 (277)
Q Consensus 189 ~Wk~WE~e~~~~~~~~~~~p 208 (277)
.++++|+|-++...+..++|
T Consensus 43 E~~kFEkE~~~~~w~~~~NP 62 (79)
T 2knc_B 43 EFAKFEEERARAKWDTANNP 62 (79)
T ss_dssp HHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHhcccccCCCC
Confidence 89999999776655444455
Done!