Query 023807
Match_columns 277
No_of_seqs 118 out of 249
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 13:07:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023807.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023807hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pila_ d.24.1.1 (A:) Pilin Gc 19.3 89 0.0065 21.5 5.3 37 22-58 7-43 (158)
2 d3b60a2 f.37.1.1 (A:10-328) Mu 18.3 98 0.0072 23.3 5.7 24 16-39 156-179 (319)
3 d1xrda1 f.3.1.1 (A:1-52) Light 17.7 60 0.0044 21.1 3.5 22 163-190 17-40 (52)
4 d2axtl1 f.23.31.1 (L:1-37) Pho 16.9 40 0.0029 20.5 2.2 13 165-177 22-34 (37)
5 d1iwga8 f.35.1.1 (A:513-566,A: 14.5 1.1E+02 0.0078 24.1 5.1 57 17-73 110-178 (222)
6 d2gola1 a.61.1.1 (A:7-107) HIV 14.1 24 0.0018 26.1 0.8 12 50-61 90-101 (101)
7 d1zkea1 a.30.6.1 (A:1-79) Hypo 14.0 28 0.002 24.5 1.0 15 49-63 63-77 (79)
8 d1j1va_ a.4.12.2 (A:) Chromoso 12.7 79 0.0058 21.9 3.4 30 33-62 46-75 (94)
9 d2dy1a4 d.58.11.1 (A:378-454) 11.6 50 0.0036 22.2 1.8 17 45-61 15-31 (77)
10 d2hyda2 f.37.1.1 (A:1-323) Put 10.8 1.4E+02 0.01 22.4 4.7 24 15-38 160-183 (323)
No 1
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=19.34 E-value=89 Score=21.50 Aligned_cols=37 Identities=8% Similarity=0.095 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhcchHHHHHHHHH
Q 023807 22 CFVLVTISIIIEHIIHLIGKWLTKKHKRALYEALEKI 58 (277)
Q Consensus 22 c~v~V~iSl~~Er~lH~lgk~Lkk~~rkaL~eALeKi 58 (277)
..|+++|+++.==++=.+.++.++.+++.....+.-+
T Consensus 7 lVViaIIgILaaia~P~~~~~~~~a~~~~~~~~l~~i 43 (158)
T d2pila_ 7 MIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQ 43 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666677777777777655544444433
No 2
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=18.33 E-value=98 Score=23.31 Aligned_cols=24 Identities=21% Similarity=0.461 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 023807 16 WAVAVVCFVLVTISIIIEHIIHLI 39 (277)
Q Consensus 16 WaVA~Vc~v~V~iSl~~Er~lH~l 39 (277)
|.++.++.+++.+.+++-....+-
T Consensus 156 ~~l~li~l~~~~~~~~~~~~~~~~ 179 (319)
T d3b60a2 156 WQLSIILVVLAPIVSIAIRVVSKR 179 (319)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHHHHHHHHHhhhhH
Confidence 667777777777777665544443
No 3
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=17.72 E-value=60 Score=21.15 Aligned_cols=22 Identities=50% Similarity=1.004 Sum_probs=15.1
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHhhhh-hh
Q 023807 163 LHIFIFVLALF-HVLYSILTMALSRAK-KW 190 (277)
Q Consensus 163 LHiFIFVLAv~-HV~ys~lTm~Lg~~K-~W 190 (277)
++.|.|+||++ |. ++|.--+ .|
T Consensus 17 ~~~fL~~LAl~IHf------iLLSt~rfNW 40 (52)
T d1xrda1 17 LATFLFVLALLIHF------ILLSTERFNW 40 (52)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HHhccCcccc
Confidence 68999999975 43 4555555 44
No 4
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=16.89 E-value=40 Score=20.47 Aligned_cols=13 Identities=46% Similarity=0.800 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHH
Q 023807 165 IFIFVLALFHVLY 177 (277)
Q Consensus 165 iFIFVLAv~HV~y 177 (277)
.+||||||.--.|
T Consensus 22 Llifvl~vLFssY 34 (37)
T d2axtl1 22 LLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4899999876555
No 5
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=14.49 E-value=1.1e+02 Score=24.05 Aligned_cols=57 Identities=21% Similarity=0.221 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHhhh--hcchHHHHHHHHHHHHH----------HHHHHHHHHHH
Q 023807 17 AVAVVCFVLVTISIIIEHIIHLIGKWLTK--KHKRALYEALEKIKSEL----------MLLGFISLLLT 73 (277)
Q Consensus 17 aVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk--~~rkaL~eALeKiKeEL----------MLLGFISLLLt 73 (277)
-+.+....++++++.+...+|.+..+.+. ++.++..+|..+--+|- +++||++|++.
T Consensus 110 ~~~~~~g~i~l~Gi~v~~~i~~~~~~~~~~~~~g~~~~~Ai~~a~~~~~~~i~~t~ltti~gf~pl~~~ 178 (222)
T d1iwga8 110 DVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPILMTSLAFILGVMPLVIS 178 (222)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhcccccchhhhhhhHHHHHHHHhccccccccCCHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhc
Confidence 34456677788999999999999988652 33344445544433332 37888888774
No 6
>d2gola1 a.61.1.1 (A:7-107) HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=14.11 E-value=24 Score=26.09 Aligned_cols=12 Identities=50% Similarity=0.590 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHH
Q 023807 50 ALYEALEKIKSE 61 (277)
Q Consensus 50 aL~eALeKiKeE 61 (277)
.=-|||+||+||
T Consensus 90 DTkEAl~kieee 101 (101)
T d2gola1 90 DTKEALDKIEEE 101 (101)
T ss_dssp BHHHHHHHHHHC
T ss_pred chHHHHHHHhcC
Confidence 346999999987
No 7
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=14.04 E-value=28 Score=24.51 Aligned_cols=15 Identities=47% Similarity=0.682 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHH
Q 023807 49 RALYEALEKIKSELM 63 (277)
Q Consensus 49 kaL~eALeKiKeELM 63 (277)
|+..+||.|||.|+.
T Consensus 63 K~~IdaLNKiKke~l 77 (79)
T d1zkea1 63 KELINALNKIKKGLL 77 (79)
T ss_dssp HHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHh
Confidence 678899999999974
No 8
>d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
Probab=12.71 E-value=79 Score=21.87 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=23.2
Q ss_pred HHHHHHHHhHhhhhcchHHHHHHHHHHHHH
Q 023807 33 EHIIHLIGKWLTKKHKRALYEALEKIKSEL 62 (277)
Q Consensus 33 Er~lH~lgk~Lkk~~rkaL~eALeKiKeEL 62 (277)
...+-.+|+.|..+.-.+...|+.|+++++
T Consensus 46 ~~sl~~Ig~~fg~rdHsTV~~a~kki~~~~ 75 (94)
T d1j1va_ 46 NHSLPEIGDAFGGRDHTTVLHACRKIEQLR 75 (94)
T ss_dssp CCCHHHHHHHTTSCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 446778899996555588899999998754
No 9
>d2dy1a4 d.58.11.1 (A:378-454) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Probab=11.64 E-value=50 Score=22.20 Aligned_cols=17 Identities=35% Similarity=0.419 Sum_probs=13.5
Q ss_pred hhcchHHHHHHHHHHHH
Q 023807 45 KKHKRALYEALEKIKSE 61 (277)
Q Consensus 45 k~~rkaL~eALeKiKeE 61 (277)
+.....|.+||+|+.+|
T Consensus 15 ~~d~~kl~~aL~~L~~e 31 (77)
T d2dy1a4 15 RTDEARLGEALRKLLEE 31 (77)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34457799999999987
No 10
>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}
Probab=10.77 E-value=1.4e+02 Score=22.39 Aligned_cols=24 Identities=4% Similarity=0.109 Sum_probs=14.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q 023807 15 TWAVAVVCFVLVTISIIIEHIIHL 38 (277)
Q Consensus 15 TWaVA~Vc~v~V~iSl~~Er~lH~ 38 (277)
.|.++.++.+++.+.+++-..+.+
T Consensus 160 ~~~l~li~l~~~~~~~~~~~~~~~ 183 (323)
T d2hyda2 160 DVKLTLAALFIFPFYILTVYVFFG 183 (323)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHhhhcc
Confidence 366666666666666665544433
Done!