BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023810
(277 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A8Y|A Chain A, Crystal Structure Of Calsequestrin From Rabbit Skeletal
Muscle Sarcoplasmic Reticulum At 2.4 A Resolution
pdb|3US3|A Chain A, Recombinant Rabbit Skeletal Calsequestrin-Mpd Complex
pdb|3V1W|A Chain A, Molecular Basis For Multiple Ligand Binding Of
Calsequestrin And Potential Inhibition By Caffeine And
Gallocatecin
Length = 367
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 17 LKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGP 66
LK+V + N +++W+DP DD PYW++T I L P
Sbjct: 269 LKSVAQDNTDNPDLSIIWIDP--------DDFPLLVPYWEKTFDIDLSAP 310
>pdb|3TRQ|A Chain A, Crystal Structure Of Native Rabbit Skeletal Calsequestrin
pdb|3TRP|A Chain A, Crystal Structure Of Recombinant Rabbit Skeletal
Calsequestrin
Length = 353
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 17 LKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGP 66
LK+V + N +++W+DP DD PYW++T I L P
Sbjct: 269 LKSVAQDNTDNPDLSIIWIDP--------DDFPLLVPYWEKTFDIDLSAP 310
>pdb|1VBE|1 Chain 1, Poliovirus (Type 3, Sabin Strain, Mutant 242-H2) Complexed
With R78206
Length = 300
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 3 SRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDD 47
SR+++E+T + N N H N+ Y ++++ P DD
Sbjct: 126 SRFDMELTFVVTANFTNANNGHALNQVYQIMYIPPGAPTPKSWDD 170
>pdb|1PIV|1 Chain 1, Binding Of The Antiviral Drug Win51711 To The Sabin Strain
Of Type 3 Poliovirus: Structural Comparison With Drug
Binding In Rhinovirus 14
pdb|1PVC|1 Chain 1, Refinement Of The Sabin Strain Of Type 3 Poliovirus At 2.4
Angstroms And The Crystal Structures Of Its Variants At
2.9 Angstroms Resolution
Length = 301
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 3 SRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDD 47
SR+++E T + N N H N+ Y ++++ P DD
Sbjct: 127 SRFDMEFTFVVTANFTNANNGHALNQVYQIMYIPPGAPTPKSWDD 171
>pdb|1VBC|1 Chain 1, Poliovirus (Type 3, Sabin Strain) (P3SABIN, P3LEON12A(1)
B) Complexed With R77975
pdb|1VBB|1 Chain 1, Poliovirus (type 3, Sabin Strain) (p3/sabin,
P3/leon/12a(1) B) Complexed With R80633
pdb|1VBA|1 Chain 1, Poliovirus (type 3, Sabin Strain) (p3/sabin,
P3/leon/12a(1) B) Complexed With R78206
Length = 300
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 3 SRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDD 47
SR+++E T + N N H N+ Y ++++ P DD
Sbjct: 126 SRFDMEFTFVVTANFTNANNGHALNQVYQIMYIPPGAPTPKSWDD 170
>pdb|3UOM|A Chain A, Ca2+ Complex Of Human Skeletal Calsequestrin
pdb|3UOM|B Chain B, Ca2+ Complex Of Human Skeletal Calsequestrin
pdb|3UOM|C Chain C, Ca2+ Complex Of Human Skeletal Calsequestrin
pdb|3UOM|D Chain D, Ca2+ Complex Of Human Skeletal Calsequestrin
pdb|3UOM|E Chain E, Ca2+ Complex Of Human Skeletal Calsequestrin
pdb|3UOM|F Chain F, Ca2+ Complex Of Human Skeletal Calsequestrin
Length = 362
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 17 LKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGP 66
LK V + N +++W+DP DD PYW++T I L P
Sbjct: 269 LKAVAQDNTENPDLSIIWIDP--------DDFPLLVPYWEKTFDIDLSAP 310
>pdb|2PLV|1 Chain 1, Structural Factors That Control Conformational Transitions
And Serotype Specificity In Type 3 Poliovirus
Length = 302
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 3 SRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDD 47
SR+++E+T + N H N+ Y +++V P K DD
Sbjct: 128 SRFDMELTFVVTANFTETNNGHALNQVYQIMYVPPGAPVPEKWDD 172
>pdb|1POV|1 Chain 1, Role And Mechanism Of The Maturation Cleavage Of Vp0 In
Poliovirus Assembly: Structure Of The Empty Capsid
Assembly Intermediate At 2.9 Angstroms Resolution
pdb|1VBD|1 Chain 1, Poliovirus (Type 1, Mahoney Strain) Complexed With R78206
pdb|1PO1|1 Chain 1, Poliovirus (Type 1, Mahoney) In Complex With R80633, An
Inhibitor Of Viral Replication
pdb|1PO2|1 Chain 1, Poliovirus (Type 1, Mahoney) In Complex With R77975, An
Inhibitor Of Viral Replication
pdb|1AR9|1 Chain 1, P1MAHONEY POLIOVIRUS, SINGLE SITE MUTANT H2142Y
pdb|1ASJ|1 Chain 1, P1MAHONEY POLIOVIRUS, AT CRYOGENIC TEMPERATURE
Length = 302
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 3 SRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDD 47
SR+++E+T + N H N+ Y +++V P K DD
Sbjct: 128 SRFDMELTFVVTANFTETNNGHALNQVYQIMYVPPGAPVPEKWDD 172
>pdb|1HXS|1 Chain 1, Crystal Structure Of Mahoney Strain Of Poliovirus At 2.2a
Resolution
pdb|1NN8|1 Chain 1, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus
Length = 302
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 3 SRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDD 47
SR+++E+T + N H N+ Y +++V P K DD
Sbjct: 128 SRFDMELTFVVTANFTETNNGHALNQVYQIMYVPPGAPVPEKWDD 172
>pdb|1AR7|1 Chain 1, P1/mahoney Poliovirus, Double Mutant P1095s + H2142y
pdb|1AR8|1 Chain 1, P1MAHONEY POLIOVIRUS, MUTANT P1095S
Length = 302
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 3 SRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDD 47
SR+++E+T + N H N+ Y +++V P K DD
Sbjct: 128 SRFDMELTFVVTANFTETNNGHALNQVYQIMYVPPGAPVPEKWDD 172
>pdb|1DGI|1 Chain 1, Cryo-Em Structure Of Human Poliovirus(Serotype 1)complexed
With Three Domain Cd155
Length = 288
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 3 SRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDD 47
SR+++E+T + N H N+ Y +++V P K DD
Sbjct: 114 SRFDMELTFVVTANFTETNNGHALNQVYQIMYVPPGAPVPEKWDD 158
>pdb|3EPD|1 Chain 1, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus Type 3
Length = 279
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 3 SRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDD 47
SR+++E T + N N H N+ Y ++++ P DD
Sbjct: 105 SRFDMEFTFVVTANFTNANNGHALNQVYQIMYIPPGAPTPKSWDD 149
>pdb|3EPC|1 Chain 1, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus Type 1
Length = 283
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 3 SRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDD 47
SR+++E+T + N H N+ Y +++V P K DD
Sbjct: 109 SRFDMELTFVVTANFTETNNGHALNQVYQIMYVPPGAPVPEKWDD 153
>pdb|1AL2|1 Chain 1, P1MAHONEY POLIOVIRUS, SINGLE SITE MUTANT V1160I
Length = 302
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 3 SRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDD 47
SR+++E+T + N H N+ Y ++++ P K DD
Sbjct: 128 SRFDMELTFVVTANFTETNNGHALNQVYQIMYIPPGAPVPEKWDD 172
>pdb|1AR6|1 Chain 1, P1MAHONEY POLIOVIRUS, DOUBLE MUTANT V1160I +P1095S
Length = 302
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 3 SRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDD 47
SR+++E+T + N H N+ Y ++++ P K DD
Sbjct: 128 SRFDMELTFVVTANFTETNNGHALNQVYQIMYIPPGAPVPEKWDD 172
>pdb|3IYB|1 Chain 1, Poliovirus Early Rna-Release Intermediate
pdb|3IYC|1 Chain 1, Poliovirus Late Rna-Release Intermediate
Length = 235
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 3 SRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDD 47
SR+++E+T + N H N+ Y +++V P K DD
Sbjct: 61 SRFDMELTFVVTANFTETNNGHALNQVYQIMYVPPGAPVPEKWDD 105
>pdb|1XYR|1 Chain 1, Poliovirus 135s Cell Entry Intermediate
Length = 232
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 3 SRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDD 47
SR+++E+T + N H N+ Y +++V P K DD
Sbjct: 58 SRFDMELTFVVTANFTETNNGHALNQVYQIMYVPPGAPVPEKWDD 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,255,070
Number of Sequences: 62578
Number of extensions: 212241
Number of successful extensions: 274
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 258
Number of HSP's gapped (non-prelim): 19
length of query: 277
length of database: 14,973,337
effective HSP length: 98
effective length of query: 179
effective length of database: 8,840,693
effective search space: 1582484047
effective search space used: 1582484047
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (24.3 bits)