BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023810
(277 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4I5I4|SPT5_GIBZE Transcription elongation factor SPT5 OS=Gibberella zeae (strain PH-1
/ ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=SPT5 PE=3
SV=1
Length = 1042
Score = 38.9 bits (89), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 40/83 (48%), Gaps = 13/83 (15%)
Query: 141 PGAYHTPP----YGVPPSGSRDYPAPPPYGYPYGRPPQDPYYATAPPPSGYP--YGAYNA 194
PG+Y P G P G+ + P P Y P P +AP P G+ +GA +A
Sbjct: 950 PGSYDAPTPGGALGAPTPGAMNAPTPGAYSAPT------PAAISAPTPGGWQGGWGADSA 1003
Query: 195 P-PAYGQPSYGAYGAAPPGGYYG 216
P PA G P+ G YGA PG YG
Sbjct: 1004 PTPAAGAPTPGYYGAPTPGASYG 1026
>sp|Q69ZN7|MYOF_MOUSE Myoferlin OS=Mus musculus GN=Myof PE=1 SV=2
Length = 2048
Score = 38.1 bits (87), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Query: 45 VDDEGDTCPYWDETLAIPLPG-PVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVIND 103
VD+E + P W+E L L G P+D ++L+I VV KLIG+A + LKD+I D
Sbjct: 38 VDNELN--PVWNEILEFDLRGIPLDSSSSLVI-VVKDFETIGQNKLIGTATVSLKDLIGD 94
Query: 104 VGLGERASLTLKLKRPSGRPHGKVDVKVAVRESRYAPPGAYH 145
T L +D+ + Y PP A H
Sbjct: 95 QNRSLPYKQTSLLNEKGQDTGATIDLVIG-----YTPPSAPH 131
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 35.4 bits (80), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 137 RYAPPGAYHTPPYGVPPSGSRDYPAP---PPYGYPYGR--PPQDPYYATAPPPSGYPYGA 191
++ PP Y P PP+G + P P P P G+ PPQ + P P+G P
Sbjct: 444 QFIPPMFYGQQPGFFPPNGRGNGPFPGPNPQMMMPRGQIPPPQGQW--PRPGPNGQPVPV 501
Query: 192 YNAPPAY-GQPSYGAYGAAPPGGYYGQVEEKKKSK 225
Y PP Y G + GA G GYY + +K +
Sbjct: 502 YGMPPVYGGDFNNGANGGRQQRGYYPNRNQNQKGR 536
>sp|Q9QZA2|PDC6I_RAT Programmed cell death 6-interacting protein OS=Rattus norvegicus
GN=Pdcd6ip PE=1 SV=2
Length = 873
Score = 33.9 bits (76), Expect = 1.3, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 6/38 (15%)
Query: 141 PGAYHTPPYGVPPSGSRDYPAPPPYGYPYGRPPQDPYY 178
P YH P G YP P YP+ +PPQ YY
Sbjct: 839 PPVYHQSP------GQAPYPGPQQPTYPFPQPPQQSYY 870
>sp|A1DHK2|SEC31_NEOFI Protein transport protein sec31 OS=Neosartorya fischeri (strain ATCC
1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sec31 PE=3
SV=1
Length = 1263
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 158 DYPAPPPYGYPYGRPPQDPYYATA---PPPSGYPYG--AYNAPPAYGQPS 202
+ P P P PY PQ P +A PPP+ P G YNAPP+ PS
Sbjct: 1012 NLPGPSPAANPYASLPQSPPMGSAMGVPPPASIPRGPSPYNAPPSMPPPS 1061
>sp|P0CR70|SPT5_CRYNJ Transcription elongation factor SPT5 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=SPT5 PE=3 SV=1
Length = 1152
Score = 31.2 bits (69), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 39/87 (44%), Gaps = 15/87 (17%)
Query: 134 RESRYAPPGAYHTPPYGVP-PSGS---------RDYPAPPPYG--YPYGRPPQDPYYATA 181
R S APP A ++ PY P P+G+ Y AP PYG PY P +A
Sbjct: 929 RPSVMAPPSAPYSAPYSAPTPAGNGAPTPAIPGNPYTAPTPYGAPTPYAAPTPGMPSLSA 988
Query: 182 PPP---SGYPYGAYNAPPAYGQPSYGA 205
P P +G + AP YG SYGA
Sbjct: 989 PTPGPGAGIAPTPFGAPTPYGAQSYGA 1015
>sp|P0CR71|SPT5_CRYNB Transcription elongation factor SPT5 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=SPT5 PE=3 SV=1
Length = 1152
Score = 31.2 bits (69), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 39/87 (44%), Gaps = 15/87 (17%)
Query: 134 RESRYAPPGAYHTPPYGVP-PSGS---------RDYPAPPPYG--YPYGRPPQDPYYATA 181
R S APP A ++ PY P P+G+ Y AP PYG PY P +A
Sbjct: 929 RPSVMAPPSAPYSAPYSAPTPAGNGAPTPAIPGNPYTAPTPYGAPTPYAAPTPGMPSLSA 988
Query: 182 PPP---SGYPYGAYNAPPAYGQPSYGA 205
P P +G + AP YG SYGA
Sbjct: 989 PTPGPGAGIAPTPFGAPTPYGAQSYGA 1015
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.138 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,003,115
Number of Sequences: 539616
Number of extensions: 7557684
Number of successful extensions: 30959
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 1087
Number of HSP's that attempted gapping in prelim test: 21307
Number of HSP's gapped (non-prelim): 5749
length of query: 277
length of database: 191,569,459
effective HSP length: 116
effective length of query: 161
effective length of database: 128,974,003
effective search space: 20764814483
effective search space used: 20764814483
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)