Query 023810
Match_columns 277
No_of_seqs 270 out of 1726
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 06:49:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04016 C2_Tollip C2 domain pr 99.9 7.4E-22 1.6E-26 155.5 15.0 118 5-133 2-121 (121)
2 cd04022 C2A_MCTP_PRT_plant C2 99.9 1E-20 2.2E-25 150.2 14.2 124 6-135 1-127 (127)
3 cd08682 C2_Rab11-FIP_classI C2 99.8 1.9E-20 4.1E-25 148.5 13.3 120 7-132 1-126 (126)
4 cd04019 C2C_MCTP_PRT_plant C2 99.8 3.8E-20 8.3E-25 151.2 14.7 126 6-136 1-134 (150)
5 cd04042 C2A_MCTP_PRT C2 domain 99.8 6.8E-20 1.5E-24 144.2 15.1 118 7-134 2-120 (121)
6 cd04051 C2_SRC2_like C2 domain 99.8 2.8E-20 6E-25 147.2 12.8 122 6-129 1-125 (125)
7 cd08681 C2_fungal_Inn1p-like C 99.8 1.2E-19 2.7E-24 141.9 13.2 117 6-133 2-118 (118)
8 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 2.9E-19 6.2E-24 142.8 14.3 123 6-134 1-133 (133)
9 cd08379 C2D_MCTP_PRT_plant C2 99.8 3.4E-19 7.4E-24 141.3 14.4 114 6-129 1-125 (126)
10 cd08378 C2B_MCTP_PRT_plant C2 99.8 3.8E-19 8.2E-24 140.3 14.0 117 7-134 2-120 (121)
11 cd04044 C2A_Tricalbin-like C2 99.8 3.4E-19 7.4E-24 140.3 13.7 121 5-134 2-123 (124)
12 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 6.6E-19 1.4E-23 138.9 15.2 118 7-133 2-121 (121)
13 cd08382 C2_Smurf-like C2 domai 99.8 3.9E-19 8.4E-24 140.5 13.6 118 6-132 1-123 (123)
14 cd08678 C2_C21orf25-like C2 do 99.8 8.9E-19 1.9E-23 138.9 15.3 118 7-136 1-122 (126)
15 cd08375 C2_Intersectin C2 doma 99.8 1.1E-18 2.3E-23 140.5 15.5 120 5-133 15-135 (136)
16 cd04046 C2_Calpain C2 domain p 99.8 1.5E-18 3.3E-23 137.7 14.7 117 5-135 3-123 (126)
17 cd08677 C2A_Synaptotagmin-13 C 99.8 4E-19 8.8E-24 138.6 10.8 94 4-103 13-109 (118)
18 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 1.6E-18 3.4E-23 136.7 13.9 119 6-133 1-121 (121)
19 cd08400 C2_Ras_p21A1 C2 domain 99.8 3E-18 6.6E-23 136.0 15.6 119 4-135 3-124 (126)
20 cd08395 C2C_Munc13 C2 domain t 99.8 1.5E-18 3.3E-23 136.4 12.8 105 6-118 1-112 (120)
21 cd04015 C2_plant_PLD C2 domain 99.8 3.1E-18 6.7E-23 141.2 15.1 120 5-134 7-158 (158)
22 cd08377 C2C_MCTP_PRT C2 domain 99.8 3.4E-18 7.4E-23 133.8 14.7 115 6-133 2-118 (119)
23 cd04036 C2_cPLA2 C2 domain pre 99.8 2.8E-18 6E-23 134.6 14.0 114 7-133 2-117 (119)
24 cd08376 C2B_MCTP_PRT C2 domain 99.8 4.5E-18 9.8E-23 132.7 14.5 115 6-134 1-115 (116)
25 KOG1030 Predicted Ca2+-depende 99.8 1.3E-18 2.8E-23 141.4 10.6 93 5-104 6-98 (168)
26 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 5.6E-18 1.2E-22 133.6 13.8 117 6-132 1-123 (123)
27 cd08690 C2_Freud-1 C2 domain f 99.8 9.3E-18 2E-22 137.3 15.2 126 6-136 3-139 (155)
28 cd08392 C2A_SLP-3 C2 domain fi 99.8 3.1E-18 6.7E-23 136.4 12.0 109 5-116 15-127 (128)
29 cd04024 C2A_Synaptotagmin-like 99.8 7.8E-18 1.7E-22 133.3 14.1 120 6-132 2-127 (128)
30 cd08381 C2B_PI3K_class_II C2 d 99.8 3E-18 6.4E-23 135.3 11.5 104 5-116 13-121 (122)
31 cd04010 C2B_RasA3 C2 domain se 99.8 3.5E-18 7.6E-23 139.2 12.0 118 6-131 1-147 (148)
32 cd08680 C2_Kibra C2 domain fou 99.8 3.1E-18 6.6E-23 135.6 11.1 106 5-116 14-124 (124)
33 cd04014 C2_PKC_epsilon C2 doma 99.8 1.8E-17 3.8E-22 132.5 15.5 117 6-135 5-130 (132)
34 cd08373 C2A_Ferlin C2 domain f 99.8 2.3E-17 4.9E-22 130.9 15.1 116 11-136 2-118 (127)
35 cd08388 C2A_Synaptotagmin-4-11 99.8 1.4E-17 3E-22 132.6 13.1 108 5-116 16-126 (128)
36 cd04028 C2B_RIM1alpha C2 domai 99.8 1.9E-17 4.2E-22 134.4 13.8 106 5-119 29-139 (146)
37 cd04017 C2D_Ferlin C2 domain f 99.8 4.8E-17 1.1E-21 130.5 15.6 126 5-136 1-134 (135)
38 cd04021 C2_E3_ubiquitin_ligase 99.7 5.3E-17 1.2E-21 128.7 15.2 118 6-131 3-124 (125)
39 cd08691 C2_NEDL1-like C2 domai 99.7 5.5E-17 1.2E-21 130.5 15.1 118 6-131 2-136 (137)
40 cd04043 C2_Munc13_fungal C2 do 99.7 7.5E-17 1.6E-21 127.6 15.6 121 5-136 1-123 (126)
41 cd08688 C2_KIAA0528-like C2 do 99.7 1.4E-17 3.1E-22 129.0 11.1 108 7-118 1-109 (110)
42 cd08391 C2A_C2C_Synaptotagmin_ 99.7 3.5E-17 7.6E-22 128.2 13.5 115 6-133 2-121 (121)
43 cd08387 C2A_Synaptotagmin-8 C2 99.7 2.3E-17 5E-22 130.3 12.4 106 5-117 16-123 (124)
44 cd04040 C2D_Tricalbin-like C2 99.7 3.7E-17 8.1E-22 127.2 13.4 114 7-129 1-114 (115)
45 cd04029 C2A_SLP-4_5 C2 domain 99.7 2E-17 4.4E-22 131.1 12.1 106 5-116 15-124 (125)
46 cd04050 C2B_Synaptotagmin-like 99.7 2.6E-17 5.7E-22 126.4 11.8 102 6-118 1-102 (105)
47 cd04027 C2B_Munc13 C2 domain s 99.7 5.4E-17 1.2E-21 128.9 13.7 114 6-131 2-127 (127)
48 cd08393 C2A_SLP-1_2 C2 domain 99.7 2.6E-17 5.7E-22 130.4 11.8 106 5-116 15-124 (125)
49 cd04030 C2C_KIAA1228 C2 domain 99.7 3.9E-17 8.5E-22 129.3 11.8 107 4-116 15-126 (127)
50 cd08385 C2A_Synaptotagmin-1-5- 99.7 4.9E-17 1.1E-21 128.4 12.1 105 5-116 16-122 (124)
51 cd04039 C2_PSD C2 domain prese 99.7 4.9E-17 1.1E-21 125.7 11.7 95 6-104 2-99 (108)
52 cd08685 C2_RGS-like C2 domain 99.7 2.9E-17 6.2E-22 129.2 10.6 104 5-116 12-119 (119)
53 cd04011 C2B_Ferlin C2 domain s 99.7 5.7E-17 1.2E-21 125.7 12.1 106 4-118 3-110 (111)
54 cd04049 C2_putative_Elicitor-r 99.7 8.6E-17 1.9E-21 127.0 12.8 105 6-117 2-107 (124)
55 cd08389 C2A_Synaptotagmin-14_1 99.7 6.6E-17 1.4E-21 128.0 11.7 104 5-116 16-122 (124)
56 cd08521 C2A_SLP C2 domain firs 99.7 1E-16 2.2E-21 126.1 11.8 106 5-116 14-123 (123)
57 cd08394 C2A_Munc13 C2 domain f 99.7 9.5E-17 2.1E-21 126.5 11.4 98 6-117 3-100 (127)
58 cd04041 C2A_fungal C2 domain f 99.7 1.5E-16 3.3E-21 123.3 11.3 97 5-103 1-100 (111)
59 cd08383 C2A_RasGAP C2 domain ( 99.7 2.9E-16 6.4E-21 122.3 12.9 114 7-133 2-117 (117)
60 cd04045 C2C_Tricalbin-like C2 99.7 2.2E-16 4.7E-21 124.3 12.0 103 6-119 2-104 (120)
61 cd04031 C2A_RIM1alpha C2 domai 99.7 2.3E-16 4.9E-21 124.5 11.5 104 5-116 16-124 (125)
62 cd08386 C2A_Synaptotagmin-7 C2 99.7 3.2E-16 6.9E-21 123.8 12.2 105 5-116 16-123 (125)
63 cd04052 C2B_Tricalbin-like C2 99.7 2.6E-16 5.6E-21 122.1 11.3 102 23-135 9-110 (111)
64 cd08390 C2A_Synaptotagmin-15-1 99.7 5.3E-16 1.1E-20 122.1 12.2 106 5-116 14-121 (123)
65 cd00275 C2_PLC_like C2 domain 99.7 1.7E-15 3.6E-20 119.8 14.9 117 5-133 2-127 (128)
66 cd04013 C2_SynGAP_like C2 doma 99.7 1.7E-15 3.6E-20 122.8 14.8 118 5-136 11-141 (146)
67 cd04009 C2B_Munc13-like C2 dom 99.7 8.5E-16 1.9E-20 123.0 11.6 97 5-104 16-120 (133)
68 cd08406 C2B_Synaptotagmin-12 C 99.7 5.5E-16 1.2E-20 124.7 10.4 92 5-99 15-110 (136)
69 cd08407 C2B_Synaptotagmin-13 C 99.7 6.6E-16 1.4E-20 124.4 10.1 93 5-99 15-112 (138)
70 cd08686 C2_ABR C2 domain in th 99.7 3.3E-15 7.1E-20 116.4 13.6 81 7-98 1-91 (118)
71 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 1.8E-15 3.8E-20 125.3 11.9 96 5-103 27-127 (162)
72 cd04038 C2_ArfGAP C2 domain pr 99.6 7.1E-15 1.5E-19 119.4 14.9 92 5-104 2-93 (145)
73 cd04032 C2_Perforin C2 domain 99.6 2.2E-15 4.7E-20 119.7 11.5 91 5-101 28-118 (127)
74 cd04018 C2C_Ferlin C2 domain t 99.6 1.6E-15 3.4E-20 124.0 10.6 107 6-117 1-124 (151)
75 cd08675 C2B_RasGAP C2 domain s 99.6 2.5E-15 5.4E-20 121.0 11.6 105 7-119 1-121 (137)
76 cd04037 C2E_Ferlin C2 domain f 99.6 2.1E-15 4.6E-20 119.3 10.5 119 6-135 1-120 (124)
77 PLN03008 Phospholipase D delta 99.6 4.1E-15 8.8E-20 146.9 14.8 102 25-136 75-179 (868)
78 cd08384 C2B_Rabphilin_Doc2 C2 99.6 2.7E-15 5.8E-20 119.9 11.0 92 5-99 13-108 (133)
79 cd08676 C2A_Munc13-like C2 dom 99.6 3.7E-15 8.1E-20 122.0 11.9 99 4-116 27-153 (153)
80 cd08409 C2B_Synaptotagmin-15 C 99.6 1.4E-15 2.9E-20 122.5 9.0 93 5-101 15-111 (137)
81 cd08408 C2B_Synaptotagmin-14_1 99.6 2.1E-15 4.4E-20 121.7 9.9 92 5-99 15-111 (138)
82 cd08405 C2B_Synaptotagmin-7 C2 99.6 2.5E-15 5.5E-20 120.6 10.3 93 5-100 15-111 (136)
83 cd08404 C2B_Synaptotagmin-4 C2 99.6 2.9E-15 6.2E-20 120.3 10.4 92 5-99 15-110 (136)
84 cd08402 C2B_Synaptotagmin-1 C2 99.6 3.5E-15 7.5E-20 119.8 10.3 92 5-99 15-110 (136)
85 cd00276 C2B_Synaptotagmin C2 d 99.6 1.4E-15 3E-20 121.2 7.3 106 5-119 14-123 (134)
86 cd08410 C2B_Synaptotagmin-17 C 99.6 5.3E-15 1.2E-19 118.7 10.6 90 5-97 14-107 (135)
87 KOG1028 Ca2+-dependent phospho 99.6 7E-15 1.5E-19 138.7 12.9 125 5-136 167-296 (421)
88 cd04026 C2_PKC_alpha_gamma C2 99.6 9.7E-15 2.1E-19 116.3 11.6 106 5-119 13-122 (131)
89 cd04035 C2A_Rabphilin_Doc2 C2 99.6 1.3E-14 2.7E-19 114.4 12.1 95 5-103 15-114 (123)
90 cd08403 C2B_Synaptotagmin-3-5- 99.6 7.8E-15 1.7E-19 117.4 10.4 91 5-98 14-108 (134)
91 cd08692 C2B_Tac2-N C2 domain s 99.6 2.9E-14 6.2E-19 113.9 10.6 93 4-100 13-110 (135)
92 KOG0696 Serine/threonine prote 99.6 3.4E-15 7.3E-20 136.7 5.8 97 5-105 180-280 (683)
93 cd04048 C2A_Copine C2 domain f 99.6 4.7E-14 1E-18 110.8 11.4 98 11-116 6-112 (120)
94 cd04047 C2B_Copine C2 domain s 99.5 3.6E-13 7.7E-18 104.0 10.9 91 9-103 4-101 (110)
95 KOG1011 Neurotransmitter relea 99.5 9.1E-14 2E-18 132.1 8.7 120 6-137 296-427 (1283)
96 PLN03200 cellulose synthase-in 99.5 2.2E-13 4.7E-18 145.6 11.9 118 5-134 1980-2100(2102)
97 PF00168 C2: C2 domain; Inter 99.5 2.4E-13 5.1E-18 98.8 7.9 83 7-94 1-85 (85)
98 cd08374 C2F_Ferlin C2 domain s 99.4 4E-12 8.6E-17 101.4 9.1 96 6-103 1-124 (133)
99 smart00239 C2 Protein kinase C 99.3 1.5E-11 3.2E-16 91.3 11.5 93 6-103 1-95 (101)
100 cd00030 C2 C2 domain. The C2 d 99.3 2.8E-11 6.1E-16 89.3 11.2 90 7-101 1-90 (102)
101 cd08689 C2_fungal_Pkc1p C2 dom 99.3 5.6E-12 1.2E-16 95.4 7.1 87 7-103 1-89 (109)
102 PLN02270 phospholipase D alpha 99.3 3.6E-11 7.8E-16 119.1 14.4 122 5-136 8-150 (808)
103 PLN02223 phosphoinositide phos 99.3 3.3E-11 7.1E-16 115.0 13.6 117 5-132 409-535 (537)
104 KOG2059 Ras GTPase-activating 99.3 9.7E-12 2.1E-16 119.6 9.8 125 1-136 1-127 (800)
105 PLN02952 phosphoinositide phos 99.2 1.5E-10 3.2E-15 112.5 14.1 118 5-133 470-596 (599)
106 COG5038 Ca2+-dependent lipid-b 99.2 1.5E-10 3.3E-15 116.9 12.1 123 5-136 436-559 (1227)
107 KOG1028 Ca2+-dependent phospho 99.2 1.2E-10 2.5E-15 110.2 9.7 92 5-99 298-393 (421)
108 PLN02230 phosphoinositide phos 99.1 7.1E-10 1.5E-14 107.7 12.7 118 5-133 469-597 (598)
109 PLN02222 phosphoinositide phos 99.1 2.6E-09 5.7E-14 103.6 14.3 118 5-133 452-580 (581)
110 PLN02228 Phosphoinositide phos 99.1 2.6E-09 5.6E-14 103.4 14.2 121 5-136 431-563 (567)
111 KOG1031 Predicted Ca2+-depende 99.1 5.8E-10 1.3E-14 105.5 9.2 125 6-133 4-135 (1169)
112 KOG0169 Phosphoinositide-speci 99.0 2.9E-09 6.3E-14 104.0 11.9 120 6-135 617-745 (746)
113 COG5038 Ca2+-dependent lipid-b 99.0 1.3E-09 2.7E-14 110.4 9.2 123 5-136 1040-1163(1227)
114 KOG1264 Phospholipase C [Lipid 99.0 2.8E-09 6E-14 104.2 10.8 119 5-136 1065-1191(1267)
115 KOG1328 Synaptic vesicle prote 99.0 1.6E-10 3.4E-15 111.5 1.3 122 6-136 115-303 (1103)
116 PLN02352 phospholipase D epsil 98.8 4.1E-08 8.9E-13 97.4 12.6 117 5-136 10-132 (758)
117 KOG3837 Uncharacterized conser 98.7 1.3E-08 2.9E-13 93.1 3.3 125 6-136 368-505 (523)
118 KOG1328 Synaptic vesicle prote 98.6 1.4E-08 3.1E-13 98.3 2.8 94 5-101 947-1048(1103)
119 KOG1013 Synaptic vesicle prote 98.4 3.2E-08 7E-13 88.4 -1.3 128 5-135 93-230 (362)
120 KOG2059 Ras GTPase-activating 98.4 4.9E-07 1.1E-11 87.7 6.1 120 10-136 136-278 (800)
121 cd08683 C2_C2cd3 C2 domain fou 98.3 8.4E-07 1.8E-11 69.6 5.5 105 7-115 1-142 (143)
122 KOG1011 Neurotransmitter relea 98.3 1.5E-06 3.2E-11 83.8 7.5 106 5-118 1125-1237(1283)
123 cd08684 C2A_Tac2-N C2 domain f 98.3 1E-06 2.2E-11 64.6 4.8 93 7-103 1-95 (103)
124 KOG0905 Phosphoinositide 3-kin 98.2 1.4E-06 3.1E-11 88.4 4.4 106 5-117 1524-1634(1639)
125 KOG1013 Synaptic vesicle prote 98.0 9.3E-06 2E-10 72.9 5.3 89 5-96 233-325 (362)
126 KOG1265 Phospholipase C [Lipid 97.6 0.00025 5.5E-09 70.8 9.4 100 5-123 703-810 (1189)
127 KOG1326 Membrane-associated pr 97.6 3.9E-05 8.5E-10 77.3 3.9 90 5-99 613-703 (1105)
128 PF10358 NT-C2: N-terminal C2 97.6 0.0024 5.1E-08 51.2 12.6 123 5-136 7-137 (143)
129 smart00157 PRP Major prion pro 97.5 0.00026 5.7E-09 58.6 5.9 48 221-268 81-128 (217)
130 PLN02964 phosphatidylserine de 97.5 0.00019 4.1E-09 71.1 6.1 85 6-103 55-140 (644)
131 KOG1924 RhoA GTPase effector D 97.4 0.00064 1.4E-08 67.3 8.8 18 48-65 439-456 (1102)
132 KOG1924 RhoA GTPase effector D 97.3 0.0014 3E-08 65.0 10.1 10 93-102 452-461 (1102)
133 cd08687 C2_PKN-like C2 domain 97.3 0.0017 3.6E-08 48.0 7.7 86 25-133 7-92 (98)
134 KOG2060 Rab3 effector RIM1 and 97.2 0.00028 6E-09 64.6 3.7 112 1-119 265-380 (405)
135 cd08398 C2_PI3K_class_I_alpha 97.2 0.0054 1.2E-07 50.5 10.5 91 5-101 8-107 (158)
136 PF12416 DUF3668: Cep120 prote 97.1 0.0077 1.7E-07 55.5 12.2 126 7-138 2-136 (340)
137 cd08693 C2_PI3K_class_I_beta_d 97.1 0.0053 1.1E-07 51.3 10.2 92 5-100 8-120 (173)
138 PF15627 CEP76-C2: CEP76 C2 do 97.1 0.012 2.7E-07 48.0 11.8 129 4-136 8-152 (156)
139 PF11618 DUF3250: Protein of u 97.1 0.0023 5.1E-08 49.1 7.1 100 30-135 2-106 (107)
140 cd08695 C2_Dock-B C2 domains f 97.1 0.0077 1.7E-07 50.9 10.7 58 40-98 54-112 (189)
141 PF14429 DOCK-C2: C2 domain in 97.0 0.012 2.6E-07 49.5 11.7 58 41-99 61-120 (184)
142 cd08380 C2_PI3K_like C2 domain 96.9 0.012 2.6E-07 48.1 10.2 92 6-100 9-107 (156)
143 cd08694 C2_Dock-A C2 domains f 96.9 0.0091 2E-07 50.6 9.4 58 40-98 54-114 (196)
144 cd08397 C2_PI3K_class_III C2 d 96.8 0.012 2.5E-07 48.6 9.4 73 25-99 28-106 (159)
145 cd08399 C2_PI3K_class_I_gamma 96.6 0.033 7.2E-07 46.7 11.0 73 5-80 10-87 (178)
146 KOG1452 Predicted Rho GTPase-a 96.5 0.0062 1.4E-07 54.7 5.9 118 5-136 51-169 (442)
147 cd04012 C2A_PI3K_class_II C2 d 96.3 0.026 5.6E-07 47.0 8.6 93 6-99 9-118 (171)
148 KOG1326 Membrane-associated pr 96.2 0.0013 2.8E-08 66.7 0.2 122 6-137 207-335 (1105)
149 KOG1327 Copine [Signal transdu 95.8 0.036 7.8E-07 53.5 7.8 87 12-102 143-236 (529)
150 cd08679 C2_DOCK180_related C2 95.7 0.13 2.8E-06 43.0 10.3 56 42-99 56-115 (178)
151 PF09849 DUF2076: Uncharacteri 95.4 0.056 1.2E-06 47.6 7.2 24 228-252 136-159 (247)
152 PF00792 PI3K_C2: Phosphoinosi 95.2 0.12 2.5E-06 41.6 7.8 57 42-100 23-85 (142)
153 cd08696 C2_Dock-C C2 domains f 95.0 0.09 2E-06 44.1 7.0 59 40-99 55-118 (179)
154 cd08697 C2_Dock-D C2 domains f 94.9 0.11 2.5E-06 43.7 7.2 59 40-99 57-123 (185)
155 smart00142 PI3K_C2 Phosphoinos 94.2 0.35 7.5E-06 36.5 7.9 73 7-81 13-91 (100)
156 PF15625 CC2D2AN-C2: CC2D2A N- 92.5 0.51 1.1E-05 39.1 7.0 71 26-101 36-107 (168)
157 KOG1327 Copine [Signal transdu 90.0 0.65 1.4E-05 45.1 5.7 60 41-103 43-105 (529)
158 KOG3671 Actin regulatory prote 86.3 6.4 0.00014 37.9 9.7 10 54-63 249-258 (569)
159 PF14924 DUF4497: Protein of u 85.4 3.7 8.1E-05 31.5 6.5 66 70-135 28-105 (112)
160 PTZ00447 apical membrane antig 85.3 8.5 0.00018 35.6 9.6 110 7-133 60-172 (508)
161 KOG3294 WW domain binding prot 84.1 9.6 0.00021 33.3 8.9 18 119-136 102-119 (261)
162 PF07162 B9-C2: Ciliary basal 83.9 18 0.00039 29.8 10.4 84 6-97 3-101 (168)
163 PF09849 DUF2076: Uncharacteri 81.0 5.3 0.00011 35.3 6.4 30 225-255 137-166 (247)
164 PF06219 DUF1005: Protein of u 79.8 30 0.00065 32.8 11.1 64 71-135 95-168 (460)
165 PF12732 YtxH: YtxH-like prote 75.2 4.1 8.9E-05 28.8 3.4 17 231-247 3-19 (74)
166 PF14909 SPATA6: Spermatogenes 74.3 33 0.00071 27.6 8.6 90 6-103 3-102 (140)
167 PF13436 Gly-zipper_OmpA: Glyc 72.9 6 0.00013 30.8 4.1 14 235-248 79-92 (118)
168 smart00157 PRP Major prion pro 72.7 16 0.00034 30.8 6.6 46 218-263 81-131 (217)
169 PF14186 Aida_C2: Cytoskeletal 72.1 12 0.00026 30.4 5.7 94 6-103 14-115 (147)
170 KOG0904 Phosphatidylinositol 3 70.8 19 0.0004 37.3 7.8 71 5-80 343-421 (1076)
171 COG3416 Uncharacterized protei 69.9 4 8.7E-05 34.8 2.6 24 228-252 137-160 (233)
172 KOG1329 Phospholipase D1 [Lipi 69.2 9 0.0002 39.5 5.3 79 27-109 138-216 (887)
173 PF13436 Gly-zipper_OmpA: Glyc 67.2 8.3 0.00018 30.0 3.7 14 233-246 81-94 (118)
174 COG4395 Uncharacterized protei 66.6 4.6 9.9E-05 36.2 2.4 28 224-252 27-54 (281)
175 PF08151 FerI: FerI (NUC094) d 66.1 18 0.00038 25.7 4.9 39 98-137 4-45 (72)
176 KOG3543 Ca2+-dependent activat 65.8 39 0.00085 33.8 8.7 83 5-96 341-425 (1218)
177 COG3416 Uncharacterized protei 65.5 3.6 7.8E-05 35.1 1.5 29 225-253 137-165 (233)
178 PF06897 DUF1269: Protein of u 62.3 9.9 0.00022 28.8 3.2 15 233-247 22-36 (102)
179 KOG0906 Phosphatidylinositol 3 61.9 11 0.00023 37.8 4.1 47 51-98 75-122 (843)
180 COG3105 Uncharacterized protei 58.5 11 0.00024 29.8 2.9 21 232-252 10-30 (138)
181 PF12416 DUF3668: Cep120 prote 57.7 1.6E+02 0.0035 27.3 11.5 123 4-134 191-338 (340)
182 PF11240 DUF3042: Protein of u 57.1 21 0.00047 23.7 3.7 22 226-247 1-24 (54)
183 PF13488 Gly-zipper_Omp: Glyci 56.5 13 0.00029 23.8 2.6 20 232-251 23-42 (46)
184 KOG0694 Serine/threonine prote 56.1 8.9 0.00019 38.5 2.6 51 26-81 27-77 (694)
185 KOG4269 Rac GTPase-activating 56.1 5.8 0.00013 40.8 1.3 65 5-80 759-827 (1112)
186 COG4575 ElaB Uncharacterized c 52.0 9.2 0.0002 29.0 1.5 15 228-242 86-100 (104)
187 PF15084 DUF4550: Domain of un 51.3 16 0.00034 27.5 2.7 51 31-81 30-83 (99)
188 COG4803 Predicted membrane pro 50.9 10 0.00023 30.7 1.7 32 232-266 82-113 (170)
189 PF10349 WWbp: WW-domain ligan 50.7 1.1E+02 0.0025 23.5 9.7 16 121-136 3-18 (116)
190 PRK10510 putative outer membra 50.0 18 0.00038 31.3 3.2 31 232-262 62-92 (219)
191 KOG4028 Uncharacterized conser 49.4 98 0.0021 24.7 6.9 81 10-98 9-102 (175)
192 PRK11677 hypothetical protein; 47.8 26 0.00057 27.9 3.6 19 233-251 6-24 (134)
193 PF06897 DUF1269: Protein of u 47.2 30 0.00066 26.2 3.7 17 235-251 20-36 (102)
194 cd05137 RasGAP_CLA2_BUD2 CLA2/ 47.1 23 0.00051 33.5 3.8 44 89-136 1-46 (395)
195 COG4980 GvpP Gas vesicle prote 45.6 18 0.00038 28.1 2.2 21 228-248 6-26 (115)
196 KOG0819 Annexin [Intracellular 42.4 17 0.00037 33.2 2.0 50 220-270 23-74 (321)
197 PF12734 CYSTM: Cysteine-rich 42.3 58 0.0013 19.8 3.8 15 233-247 19-33 (37)
198 PF10409 PTEN_C2: C2 domain of 41.5 1.5E+02 0.0032 22.9 7.2 92 6-101 5-98 (134)
199 PF06295 DUF1043: Protein of u 40.7 36 0.00078 26.8 3.4 18 234-251 3-20 (128)
200 KOG4849 mRNA cleavage factor I 40.1 1.7E+02 0.0036 27.3 7.9 7 124-130 192-198 (498)
201 COG3944 Capsular polysaccharid 38.9 32 0.0007 29.7 3.0 29 232-260 175-203 (226)
202 PF06682 DUF1183: Protein of u 38.0 95 0.0021 28.5 6.1 17 232-248 253-269 (318)
203 COG4575 ElaB Uncharacterized c 37.7 30 0.00064 26.3 2.3 17 232-248 86-102 (104)
204 COG4980 GvpP Gas vesicle prote 34.5 57 0.0012 25.3 3.5 17 227-243 9-25 (115)
205 TIGR01006 polys_exp_MPA1 polys 33.7 38 0.00083 29.0 2.8 29 232-260 177-205 (226)
206 PRK00523 hypothetical protein; 32.7 50 0.0011 23.3 2.7 12 237-248 15-26 (72)
207 PF05957 DUF883: Bacterial pro 32.3 41 0.00089 24.7 2.4 16 233-248 77-92 (94)
208 COG4395 Uncharacterized protei 31.6 36 0.00077 30.6 2.2 15 222-236 29-43 (281)
209 PF06682 DUF1183: Protein of u 30.9 1.1E+02 0.0023 28.2 5.2 21 227-247 252-272 (318)
210 KOG2391 Vacuolar sorting prote 30.1 4.6E+02 0.0099 24.4 9.2 19 248-266 209-227 (365)
211 KOG3364 Membrane protein invol 29.5 41 0.00089 27.1 2.0 20 227-246 124-144 (149)
212 PF03672 UPF0154: Uncharacteri 29.4 51 0.0011 22.8 2.2 16 233-248 3-18 (64)
213 PF13441 Gly-zipper_YMGG: YMGG 28.9 51 0.0011 21.1 2.0 17 232-248 6-22 (45)
214 COG3763 Uncharacterized protei 28.2 62 0.0013 22.7 2.5 17 232-248 9-25 (71)
215 cd05701 S1_Rrp5_repeat_hs10 S1 27.5 1E+02 0.0022 21.4 3.4 48 28-81 13-60 (69)
216 PRK10404 hypothetical protein; 27.0 55 0.0012 24.7 2.3 10 238-247 89-98 (101)
217 COG3133 SlyB Outer membrane li 26.1 56 0.0012 26.2 2.2 23 231-253 86-108 (154)
218 PF05808 Podoplanin: Podoplani 25.5 23 0.0005 29.1 0.0 18 228-245 125-142 (162)
219 PRK10132 hypothetical protein; 25.4 64 0.0014 24.7 2.4 14 235-248 92-105 (108)
220 PRK01844 hypothetical protein; 25.3 67 0.0015 22.7 2.3 14 235-248 12-25 (72)
221 PF05659 RPW8: Arabidopsis bro 24.8 1.3E+02 0.0028 24.3 4.2 21 233-253 5-25 (147)
222 KOG2419 Phosphatidylserine dec 24.6 16 0.00035 36.6 -1.3 35 26-63 304-338 (975)
223 KOG4027 Uncharacterized conser 24.3 4.1E+02 0.0089 22.0 9.4 45 53-98 64-109 (187)
224 PF02060 ISK_Channel: Slow vol 24.2 90 0.0019 24.6 3.0 29 232-260 48-76 (129)
225 PF14472 DUF4429: Domain of un 23.1 1.2E+02 0.0026 22.3 3.5 34 88-132 22-55 (94)
226 KOG0132 RNA polymerase II C-te 22.4 5.5E+02 0.012 26.7 8.7 15 89-103 508-522 (894)
227 KOG2236 Uncharacterized conser 21.9 3.1E+02 0.0066 26.6 6.6 63 148-213 408-470 (483)
228 PRK10510 putative outer membra 21.0 92 0.002 26.9 2.8 23 244-266 70-92 (219)
229 PF10247 Romo1: Reactive mitoc 20.4 51 0.0011 23.0 0.9 17 228-244 10-26 (67)
230 PF14999 Shadoo: Shadow of pri 20.3 21 0.00044 27.5 -1.2 17 232-248 50-66 (131)
No 1
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.88 E-value=7.4e-22 Score=155.55 Aligned_cols=118 Identities=19% Similarity=0.282 Sum_probs=96.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE 84 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~ 84 (277)
.+|+|+|++|++|++.+ + +++||||++++. +.+++|+++.+++.||+|||+|.|.|... ...|.|+|||++. +
T Consensus 2 g~L~v~v~~Ak~l~~~~-~-g~sDPYv~i~lg-~~~~kT~v~~~~~~nP~WNe~F~f~v~~~---~~~l~~~V~d~d~-~ 74 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-L-TRMDPYCRIRVG-HAVYETPTAYNGAKNPRWNKTIQCTLPEG---VDSIYIEIFDERA-F 74 (121)
T ss_pred cEEEEEEEEccCCCcCC-C-CCCCceEEEEEC-CEEEEeEEccCCCCCCccCeEEEEEecCC---CcEEEEEEEeCCC-C
Confidence 47999999999998877 4 899999999994 67789999656689999999999999752 3579999999997 4
Q ss_pred CCCceeEEEEEecce-eccccCCCceeeEEEEeecCC-CCCceEEEEEEEE
Q 023810 85 DTKKLIGSAKLKLKD-VINDVGLGERASLTLKLKRPS-GRPHGKVDVKVAV 133 (277)
Q Consensus 85 ~~d~~iG~~~v~L~~-l~~~~~~~~~~~~~~~L~~~s-g~~~G~L~l~v~~ 133 (277)
++|++||++.|+|.+ +... +....||.|...+ .+..|.|+|+++|
T Consensus 75 ~~dd~iG~~~i~l~~~~~~g----~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 75 TMDERIAWTHITIPESVFNG----ETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred cCCceEEEEEEECchhccCC----CCccccEeCcCccCCCCceEEEEEEeC
Confidence 788999999999964 4433 3356788886543 3467999999985
No 2
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.86 E-value=1e-20 Score=150.21 Aligned_cols=124 Identities=20% Similarity=0.349 Sum_probs=100.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCC-CCCCceEEEEEEEccCCC
Q 023810 6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGP-VDDDTTLIIDVVHAGNEE 84 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~-~l~~~~L~v~V~d~~~~~ 84 (277)
.|+|+|++|++|...+.. +.+||||++++. ..+.+|++ +.++.||+|||+|.|.+... .+.+..|.|+|||.+.+.
T Consensus 1 ~L~V~vi~A~~L~~~d~~-g~~dpyv~v~~~-~~~~rT~v-~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQ-GSSSAYVELDFD-GQKKRTRT-KPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCCCCC-CCcCcEEEEEEC-CEEeccee-EcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence 489999999999987754 889999999995 56779999 77899999999999999752 233568999999988642
Q ss_pred CCCceeEEEEEecceeccccCCCceeeEEEEeecC--CCCCceEEEEEEEEEe
Q 023810 85 DTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP--SGRPHGKVDVKVAVRE 135 (277)
Q Consensus 85 ~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~--sg~~~G~L~l~v~~~~ 135 (277)
..++|||++.|+|+++... +.....||.|.++ .++.+|+|.|++.|.+
T Consensus 78 ~~d~~lG~v~i~l~~l~~~---~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 127 (127)
T cd04022 78 RRRSFLGRVRISGTSFVPP---SEAVVQRYPLEKRGLFSRVRGEIGLKVYITD 127 (127)
T ss_pred CCCCeeeEEEEcHHHcCCC---CCccceEeEeeeCCCCCCccEEEEEEEEEcC
Confidence 2789999999999998732 3335688888654 4578999999999863
No 3
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.85 E-value=1.9e-20 Score=148.49 Aligned_cols=120 Identities=29% Similarity=0.493 Sum_probs=96.8
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCC---CCCCceEEEEEEEccCC
Q 023810 7 VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGP---VDDDTTLIIDVVHAGNE 83 (277)
Q Consensus 7 L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~---~l~~~~L~v~V~d~~~~ 83 (277)
|+|+|++|++|...+.. +.+||||++++. ..+.+|++ +.++.||+|||+|.|.+... ......|.|+|||++.
T Consensus 1 ~~V~V~~A~~L~~~d~~-g~~dpYv~v~l~-~~~~kT~v-~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~- 76 (126)
T cd08682 1 VQVTVLQARGLLCKGKS-GTNDAYVIIQLG-KEKYSTSV-KEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL- 76 (126)
T ss_pred CEEEEEECcCCcCCCCC-cCCCceEEEEEC-Ceeeeeee-ecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc-
Confidence 58999999999987754 899999999995 67789999 67789999999999998752 2345789999999986
Q ss_pred CCCCceeEEEEEecceeccccCCCceeeEEEEeecC---CCCCceEEEEEEE
Q 023810 84 EDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP---SGRPHGKVDVKVA 132 (277)
Q Consensus 84 ~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~---sg~~~G~L~l~v~ 132 (277)
.++++|||++.|+|+++.... +.....||.|... ..+.+|+|.|+++
T Consensus 77 ~~~d~~iG~~~i~l~~l~~~~--~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 77 LGLDKFLGQVSIPLNDLDEDK--GRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred cCCCceeEEEEEEHHHhhccC--CCcccEEEECcCCCCCCccccceEEEEeC
Confidence 467899999999999987432 2335689999643 2356899999874
No 4
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.84 E-value=3.8e-20 Score=151.25 Aligned_cols=126 Identities=19% Similarity=0.282 Sum_probs=102.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCC
Q 023810 6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEED 85 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~ 85 (277)
.|+|+|++|++|...+.. +.+||||+++++ ..+.+|++..+++.||+|||+|.|.+.. ...+.|.|+||+.+. ..
T Consensus 1 ~L~V~Vi~A~~L~~~d~~-g~sDPYV~v~l~-~~~~kTk~~~~~t~nP~WNE~F~f~v~~--~~~~~l~v~V~d~~~-~~ 75 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKN-RVPEVFVKAQLG-NQVLRTRPSQTRNGNPSWNEELMFVAAE--PFEDHLILSVEDRVG-PN 75 (150)
T ss_pred CEEEEEEEeECCCCCCCC-CCCCeEEEEEEC-CEEeeeEeccCCCCCCcccCcEEEEecC--ccCCeEEEEEEEecC-CC
Confidence 389999999999988865 899999999996 5778999854557999999999999965 234689999999886 35
Q ss_pred CCceeEEEEEecceeccccCCCceeeEEEEeecCCC--------CCceEEEEEEEEEec
Q 023810 86 TKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSG--------RPHGKVDVKVAVRES 136 (277)
Q Consensus 86 ~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg--------~~~G~L~l~v~~~~~ 136 (277)
++++||++.|+|+++......+.....||+|.+..+ +.+|+|+|+++|...
T Consensus 76 ~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 76 KDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG 134 (150)
T ss_pred CCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence 789999999999998764333344578999976543 568999999999754
No 5
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.84 E-value=6.8e-20 Score=144.25 Aligned_cols=118 Identities=20% Similarity=0.373 Sum_probs=99.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCCC
Q 023810 7 VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEEDT 86 (277)
Q Consensus 7 L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~~ 86 (277)
|+|+|++|++|...+.. +.+||||++.++.....+|++ +.++.||.|||+|.|.+.. + ...|.|+|||++. ..+
T Consensus 2 L~v~v~~a~~L~~~d~~-g~~Dpyv~v~~~~~~~~kT~~-~~~t~nP~Wne~f~f~v~~--~-~~~l~~~v~D~d~-~~~ 75 (121)
T cd04042 2 LDIHLKEGRNLAARDRG-GTSDPYVKFKYGGKTVYKSKT-IYKNLNPVWDEKFTLPIED--V-TQPLYIKVFDYDR-GLT 75 (121)
T ss_pred eEEEEEEeeCCCCcCCC-CCCCCeEEEEECCEEEEEeee-ccCCCCCccceeEEEEecC--C-CCeEEEEEEeCCC-CCC
Confidence 79999999999988865 899999999996556789998 7789999999999999864 2 4689999999986 468
Q ss_pred CceeEEEEEecceeccccCCCceeeEEEEeecCC-CCCceEEEEEEEEE
Q 023810 87 KKLIGSAKLKLKDVINDVGLGERASLTLKLKRPS-GRPHGKVDVKVAVR 134 (277)
Q Consensus 87 d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~s-g~~~G~L~l~v~~~ 134 (277)
+++||++.++|.++... .....|++|.... .+..|+|.|.++|.
T Consensus 76 ~~~iG~~~~~l~~l~~~----~~~~~~~~L~~~~~~~~~G~l~l~~~~~ 120 (121)
T cd04042 76 DDFMGSAFVDLSTLELN----KPTEVKLKLEDPNSDEDLGYISLVVTLT 120 (121)
T ss_pred CcceEEEEEEHHHcCCC----CCeEEEEECCCCCCccCceEEEEEEEEC
Confidence 89999999999998864 2356788887554 36799999999985
No 6
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.84 E-value=2.8e-20 Score=147.15 Aligned_cols=122 Identities=42% Similarity=0.682 Sum_probs=101.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCC--CCceEEEEEEEccCC
Q 023810 6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVD--DDTTLIIDVVHAGNE 83 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l--~~~~L~v~V~d~~~~ 83 (277)
+|+|+|++|++|+..+.. +++||||++++....+.+|++..+++.||.|||+|.|.+....+ ....|.|+|||++.
T Consensus 1 ~L~V~V~sA~~L~~~~~~-~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~- 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLF-GKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP- 78 (125)
T ss_pred CEEEEEEEcccCCCCCcc-cCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC-
Confidence 489999999999988754 89999999999654778999855678999999999999976321 25789999999986
Q ss_pred CCCCceeEEEEEecceeccccCCC-ceeeEEEEeecCCCCCceEEEE
Q 023810 84 EDTKKLIGSAKLKLKDVINDVGLG-ERASLTLKLKRPSGRPHGKVDV 129 (277)
Q Consensus 84 ~~~d~~iG~~~v~L~~l~~~~~~~-~~~~~~~~L~~~sg~~~G~L~l 129 (277)
...++|||++.|+|.++....... +....||+|++++++.+|+|+|
T Consensus 79 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 79 SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 367899999999999998765322 2357899999999999999975
No 7
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.83 E-value=1.2e-19 Score=141.94 Aligned_cols=117 Identities=24% Similarity=0.367 Sum_probs=96.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCC
Q 023810 6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEED 85 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~ 85 (277)
.|+|+|++|++|+..+.. +++||||+++++ ..+.+|++..+++.||+|||+|.|.+... ....|.|+|||++.. +
T Consensus 2 ~L~V~v~~A~~L~~~~~~-~~~dpyv~v~~~-~~~~kT~~~~~~~~nP~Wne~f~f~v~~~--~~~~l~i~v~d~~~~-~ 76 (118)
T cd08681 2 TLVVVVLKARNLPNKRKL-DKQDPYCVLRIG-GVTKKTKTDFRGGQHPEWDEELRFEITED--KKPILKVAVFDDDKR-K 76 (118)
T ss_pred EEEEEEEEccCCCCCCcC-CCCCceEEEEEC-CCccccccccCCCCCCccCceEEEEecCC--CCCEEEEEEEeCCCC-C
Confidence 699999999999988865 899999999995 56778887445678999999999999762 346899999998863 3
Q ss_pred CCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEE
Q 023810 86 TKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAV 133 (277)
Q Consensus 86 ~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~ 133 (277)
+++||++.|+|.++..... ...|+.|.+ +++..|+|.|+++|
T Consensus 77 -~~~iG~~~~~l~~~~~~~~----~~~w~~L~~-~~~~~G~i~l~l~f 118 (118)
T cd08681 77 -PDLIGDTEVDLSPALKEGE----FDDWYELTL-KGRYAGEVYLELTF 118 (118)
T ss_pred -CcceEEEEEecHHHhhcCC----CCCcEEecc-CCcEeeEEEEEEEC
Confidence 8999999999999876432 356777754 55789999999986
No 8
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.82 E-value=2.9e-19 Score=142.77 Aligned_cols=123 Identities=15% Similarity=0.257 Sum_probs=99.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC------CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEE
Q 023810 6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN------KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVH 79 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~------~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d 79 (277)
.|+|+|++|++|...+.. +..||||++.+... .+.+|++ ++++.||.|||+|.|.+.. ....|.|+|||
T Consensus 1 ~L~v~Vi~a~~L~~~d~~-~~~Dpyv~v~~~~~~~~~~~~~~kT~v-~~~t~nP~Wne~f~f~~~~---~~~~l~~~v~d 75 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIF-GASDPYVKISLYDPDGNGEIDSVQTKT-IKKTLNPKWNEEFFFRVNP---REHRLLFEVFD 75 (133)
T ss_pred CEEEEEEEeECCCcccCC-CCcCcEEEEEEECCCCCCcccceeeeE-EcCCCCCcEeeEEEEEEcC---CCCEEEEEEEE
Confidence 489999999999988755 88999999999432 2468988 7889999999999999865 24679999999
Q ss_pred ccCCCCCCceeEEEEEecceeccccCCC--ceeeEEEEeecC--CCCCceEEEEEEEEE
Q 023810 80 AGNEEDTKKLIGSAKLKLKDVINDVGLG--ERASLTLKLKRP--SGRPHGKVDVKVAVR 134 (277)
Q Consensus 80 ~~~~~~~d~~iG~~~v~L~~l~~~~~~~--~~~~~~~~L~~~--sg~~~G~L~l~v~~~ 134 (277)
.+. .+.+++||++.|+|.++....... .....||.|.+. .++.+|+|+|+++|.
T Consensus 76 ~~~-~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 76 ENR-LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCC-CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 986 468899999999999988764322 124678888754 567899999999983
No 9
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.82 E-value=3.4e-19 Score=141.29 Aligned_cols=114 Identities=23% Similarity=0.347 Sum_probs=92.0
Q ss_pred EEEEEEEEeeC---CCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccC
Q 023810 6 EVEVTITSAKD---LKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGN 82 (277)
Q Consensus 6 ~L~V~v~~A~~---L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~ 82 (277)
.|+|+|++|++ |...+.. +++||||+++++ .++.||++ +.++.||+|||+|.|.+.. ....|.|+|||.+.
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~-g~sDPYv~i~~g-~~~~rTk~-~~~~~nP~WnE~f~f~v~~---~~~~l~v~V~d~d~ 74 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGR-GSTDAYCVAKYG-PKWVRTRT-VEDSSNPRWNEQYTWPVYD---PCTVLTVGVFDNSQ 74 (126)
T ss_pred CeEEEEEEeECCccccccccC-CCCCeeEEEEEC-CEEeEcCc-ccCCCCCcceeEEEEEecC---CCCEEEEEEEECCC
Confidence 38999999999 7777755 899999999994 77889999 7889999999999999965 23579999999885
Q ss_pred CC-----CCCceeEEEEEecceeccccCCCceeeEEEEeecC---CCCCceEEEE
Q 023810 83 EE-----DTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP---SGRPHGKVDV 129 (277)
Q Consensus 83 ~~-----~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~---sg~~~G~L~l 129 (277)
.. ..++|||++.|+|+++..+ .....||+|... ..+..|+|.+
T Consensus 75 ~~~~~~~~~dd~lG~~~i~l~~l~~~----~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 75 SHWKEAVQPDVLIGKVRIRLSTLEDD----RVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccccccCCCCceEEEEEEEHHHccCC----CEEeeEEEeEeCCCCCccCCcEEEe
Confidence 31 3789999999999998764 335688998753 2455677764
No 10
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.82 E-value=3.8e-19 Score=140.27 Aligned_cols=117 Identities=23% Similarity=0.282 Sum_probs=96.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCCC
Q 023810 7 VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEEDT 86 (277)
Q Consensus 7 L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~~ 86 (277)
|+|+|++|++|... .+||||++.+. ..+.+|++ ++++.||+|||+|.|.+.. +....|.|+|||++.. +
T Consensus 2 L~V~Vi~a~~L~~~-----~~Dpyv~v~l~-~~~~kT~v-~~~t~nP~Wne~F~f~~~~--~~~~~L~~~v~d~d~~--~ 70 (121)
T cd08378 2 LYVRVVKARGLPAN-----SNDPVVEVKLG-NYKGSTKA-IERTSNPEWNQVFAFSKDR--LQGSTLEVSVWDKDKA--K 70 (121)
T ss_pred EEEEEEEecCCCcc-----cCCCEEEEEEC-Cccccccc-cCCCCCCccceEEEEEcCC--CcCCEEEEEEEeCCCC--c
Confidence 89999999999865 57999999995 57889999 7889999999999999864 3467899999999863 7
Q ss_pred CceeEEEEEecceeccccC-CCceeeEEEEeecC-CCCCceEEEEEEEEE
Q 023810 87 KKLIGSAKLKLKDVINDVG-LGERASLTLKLKRP-SGRPHGKVDVKVAVR 134 (277)
Q Consensus 87 d~~iG~~~v~L~~l~~~~~-~~~~~~~~~~L~~~-sg~~~G~L~l~v~~~ 134 (277)
++|||++.|+|+++..... .+.....||.|.+. ..+.+|+|.|+|+|.
T Consensus 71 ~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 71 DDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFG 120 (121)
T ss_pred CceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEec
Confidence 8999999999999875432 12234688999654 357899999999985
No 11
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.82 E-value=3.4e-19 Score=140.28 Aligned_cols=121 Identities=26% Similarity=0.402 Sum_probs=98.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC-CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCC
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP-NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNE 83 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~-~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~ 83 (277)
..|+|+|++|++|+..+...+.+||||+++++. ..+.+|++ +.++.||.|||+|.|.+.. ....|.|+|||.+.
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~-~~~~~~P~Wne~~~~~v~~---~~~~l~~~v~d~~~- 76 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKV-KKDTSNPVWNETKYILVNS---LTEPLNLTVYDFND- 76 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeee-ecCCCCCcceEEEEEEeCC---CCCEEEEEEEecCC-
Confidence 479999999999986554446789999999965 47789999 7889999999999999873 35789999999986
Q ss_pred CCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEEE
Q 023810 84 EDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVR 134 (277)
Q Consensus 84 ~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~ 134 (277)
..++++||++.++|.++...... ...++.| ..+++.+|+|+|+++|.
T Consensus 77 ~~~d~~iG~~~~~l~~l~~~~~~---~~~~~~~-~~~~k~~G~i~~~l~~~ 123 (124)
T cd04044 77 KRKDKLIGTAEFDLSSLLQNPEQ---ENLTKNL-LRNGKPVGELNYDLRFF 123 (124)
T ss_pred CCCCceeEEEEEEHHHhccCccc---cCcchhh-hcCCccceEEEEEEEeC
Confidence 36889999999999999876432 1233334 35778899999999985
No 12
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.82 E-value=6.6e-19 Score=138.88 Aligned_cols=118 Identities=19% Similarity=0.278 Sum_probs=96.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCCC
Q 023810 7 VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEEDT 86 (277)
Q Consensus 7 L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~~ 86 (277)
|.|+|++|++|+..+..++.+||||++.++.....+|++ +.++.||.|||+|.|.|.. ....|.|.|||++. ..+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v-~~kt~~P~WnE~F~f~v~~---~~~~l~~~v~d~~~-~~~ 76 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKT-VEKSLCPFFGEDFYFEIPR---TFRHLSFYIYDRDV-LRR 76 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeE-EECCCCCccCCeEEEEcCC---CCCEEEEEEEECCC-CCC
Confidence 789999999998764334788999999996455679999 7789999999999999975 24689999999997 468
Q ss_pred CceeEEEEEecceeccccCCCceeeEEEEeec--CCCCCceEEEEEEEE
Q 023810 87 KKLIGSAKLKLKDVINDVGLGERASLTLKLKR--PSGRPHGKVDVKVAV 133 (277)
Q Consensus 87 d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~--~sg~~~G~L~l~v~~ 133 (277)
+++||.+.|+|+++.... ....||.|.. ..++.+|+|.|+++|
T Consensus 77 ~~~iG~~~i~l~~l~~~~----~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 77 DSVIGKVAIKKEDLHKYY----GKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred CceEEEEEEEHHHccCCC----CcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 899999999999987542 2467888864 345679999999875
No 13
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.81 E-value=3.9e-19 Score=140.50 Aligned_cols=118 Identities=20% Similarity=0.327 Sum_probs=95.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCC
Q 023810 6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEED 85 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~ 85 (277)
.|+|+|++|++|...+.. +.+||||++++++..+.+|++ ++++.||.|||+|.|.+.. ...|.|+|||++....
T Consensus 1 ~l~v~v~~A~~L~~~~~~-~~~dpyv~v~~~~~~~~kT~v-~~~t~nP~Wne~f~~~~~~----~~~l~i~V~d~~~~~~ 74 (123)
T cd08382 1 KVRLTVLCADGLAKRDLF-RLPDPFAVITVDGGQTHSTDV-AKKTLDPKWNEHFDLTVGP----SSIITIQVFDQKKFKK 74 (123)
T ss_pred CeEEEEEEecCCCccCCC-CCCCcEEEEEECCccceEccE-EcCCCCCcccceEEEEeCC----CCEEEEEEEECCCCCC
Confidence 489999999999987755 899999999997677789999 7889999999999999964 5689999999886432
Q ss_pred C-CceeEEEEEecceeccccCCCceeeEEEEeecC----CCCCceEEEEEEE
Q 023810 86 T-KKLIGSAKLKLKDVINDVGLGERASLTLKLKRP----SGRPHGKVDVKVA 132 (277)
Q Consensus 86 ~-d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~----sg~~~G~L~l~v~ 132 (277)
. ++|||++.|+|.++...... ...|+.|+.. .++..|+|.++++
T Consensus 75 ~~d~~lG~~~i~l~~l~~~~~~---~~~~~~l~~~~~~~~~~~~G~v~~~~~ 123 (123)
T cd08382 75 KDQGFLGCVRIRANAVLPLKDT---GYQRLDLRKLKKSDNLSVRGKIVVSLS 123 (123)
T ss_pred CCCceEeEEEEEHHHccccCCC---ccceeEeecCCCCCCceEeeEEEEEeC
Confidence 2 58999999999999765322 2347777543 4667899988763
No 14
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.81 E-value=8.9e-19 Score=138.92 Aligned_cols=118 Identities=21% Similarity=0.410 Sum_probs=96.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCcEEEEEECC-CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCC
Q 023810 7 VEVTITSAKDLKNVNWRHGPNRPYAVLWVDP-NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEED 85 (277)
Q Consensus 7 L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~-~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~ 85 (277)
|.|+|++|++|.. .. +.+||||++.++. ..+.+|++ +.++.||+|||+|.|.+.. ....|.|+|||++. .+
T Consensus 1 l~v~v~~A~~L~~--~~-g~~dpyv~v~~~~~~~~~kT~v-~~~t~nP~Wne~f~f~~~~---~~~~l~~~v~d~~~-~~ 72 (126)
T cd08678 1 LLVKNIKANGLSE--AA-GSSNPYCVLEMDEPPQKYQSST-QKNTSNPFWDEHFLFELSP---NSKELLFEVYDNGK-KS 72 (126)
T ss_pred CEEEEEEecCCCC--CC-CCcCCEEEEEECCCCcEEEeEE-EecCCCCccCceEEEEeCC---CCCEEEEEEEECCC-CC
Confidence 6799999999986 33 8999999999953 35679999 7788999999999999964 35679999999986 36
Q ss_pred CCceeEEEEEecceeccccCCCceeeEEEEeecC---CCCCceEEEEEEEEEec
Q 023810 86 TKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP---SGRPHGKVDVKVAVRES 136 (277)
Q Consensus 86 ~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~---sg~~~G~L~l~v~~~~~ 136 (277)
+++|||++.|+|.++..... ...|+.|... ....+|+|.|++.|.+.
T Consensus 73 ~~~~lG~~~i~l~~l~~~~~----~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 73 DSKFLGLAIVPFDELRKNPS----GRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred CCceEEEEEEeHHHhccCCc----eeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 78999999999999886532 2456777543 35679999999999875
No 15
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.81 E-value=1.1e-18 Score=140.48 Aligned_cols=120 Identities=22% Similarity=0.363 Sum_probs=97.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE 84 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~ 84 (277)
..|+|+|++|++|...+.. +.+||||++.+. +.+.+|++ +.++.||.|||+|.|.+.. .....|.|+|||++. .
T Consensus 15 G~L~V~Vi~A~~L~~~d~~-g~~DPYv~v~~~-~~~~kT~v-i~~t~nP~Wne~f~f~v~~--~~~~~l~i~V~D~d~-~ 88 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNSN-GKSDPYCEVSMG-SQEHKTKV-VSDTLNPKWNSSMQFFVKD--LEQDVLCITVFDRDF-F 88 (136)
T ss_pred EEEEEEEEEeeCCCCCCCC-CCcCcEEEEEEC-CEeeeccc-cCCCCCCccCceEEEEecC--ccCCEEEEEEEECCC-C
Confidence 6899999999999988755 899999999994 67789999 7889999999999999965 345689999999986 4
Q ss_pred CCCceeEEEEEecceeccccCCC-ceeeEEEEeecCCCCCceEEEEEEEE
Q 023810 85 DTKKLIGSAKLKLKDVINDVGLG-ERASLTLKLKRPSGRPHGKVDVKVAV 133 (277)
Q Consensus 85 ~~d~~iG~~~v~L~~l~~~~~~~-~~~~~~~~L~~~sg~~~G~L~l~v~~ 133 (277)
..+++||++.|+|.++....... .....++.| ++..+|+|.|+++|
T Consensus 89 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~---~~~~~g~i~l~~~~ 135 (136)
T cd08375 89 SPDDFLGRTEIRVADILKETKESKGPITKRLLL---HEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCeeEEEEEEHHHhccccccCCCcEEEEecc---ccccceeEEEEEEe
Confidence 67899999999999988632211 112344554 46678999999987
No 16
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.80 E-value=1.5e-18 Score=137.66 Aligned_cols=117 Identities=20% Similarity=0.295 Sum_probs=95.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE 84 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~ 84 (277)
.+|+|+|++|++|...+.. +.+||||+++++ ..+.+|++ ++++.||+|||+|.|.+.. ....|.|+|||++..
T Consensus 3 ~~~~V~v~~A~~L~~~d~~-g~~dPyv~v~~~-~~~~kT~v-~~~t~nP~Wne~f~f~~~~---~~~~l~i~V~d~~~~- 75 (126)
T cd04046 3 VVTQVHVHSAEGLSKQDSG-GGADPYVIIKCE-GESVRSPV-QKDTLSPEFDTQAIFYRKK---PRSPIKIQVWNSNLL- 75 (126)
T ss_pred EEEEEEEEeCcCCCCCCCC-CCcCccEEEEEC-CEEEEeCc-cCCCCCCcccceEEEEecC---CCCEEEEEEEECCCC-
Confidence 4899999999999988765 899999999995 56789999 7889999999999998865 356899999998863
Q ss_pred CCCceeEEEEEecceeccccCCCceeeEEEEe----ecCCCCCceEEEEEEEEEe
Q 023810 85 DTKKLIGSAKLKLKDVINDVGLGERASLTLKL----KRPSGRPHGKVDVKVAVRE 135 (277)
Q Consensus 85 ~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L----~~~sg~~~G~L~l~v~~~~ 135 (277)
.++|||.+++++.++... ...++.| .+.+++..|+|.|++++.+
T Consensus 76 -~d~~lG~~~~~l~~~~~~------~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 -CDEFLGQATLSADPNDSQ------TLRTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred -CCCceEEEEEecccCCCc------CceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 589999999999875322 1234444 2367889999999998864
No 17
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.80 E-value=4e-19 Score=138.56 Aligned_cols=94 Identities=26% Similarity=0.331 Sum_probs=81.5
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC---CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810 4 RYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP---NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA 80 (277)
Q Consensus 4 ~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~---~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~ 80 (277)
...|+|+|++|++|+ . . +.+||||++++.+ ..+.+|+| .++++||+|||+|.|.|..+++.+..|.|+|||.
T Consensus 13 ~~~L~V~vikA~~L~-~--~-g~sDPYVKv~L~~~~k~~k~kT~v-~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~ 87 (118)
T cd08677 13 KAELHVNILEAENIS-V--D-AGCECYISGCVSVSEGQKEAQTAL-KKLALHTQWEEELVFPLPEEESLDGTLTLTLRCC 87 (118)
T ss_pred CCEEEEEEEEecCCC-C--C-CCCCeEEEEEEcCCcCccEEEcce-ecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeC
Confidence 358999999999998 2 2 6789999999942 25779999 7889999999999999988778888999999999
Q ss_pred cCCCCCCceeEEEEEecceeccc
Q 023810 81 GNEEDTKKLIGSAKLKLKDVIND 103 (277)
Q Consensus 81 ~~~~~~d~~iG~~~v~L~~l~~~ 103 (277)
++ ++++++||++.+++.++...
T Consensus 88 Dr-fs~~d~IG~v~l~l~~~~~~ 109 (118)
T cd08677 88 DR-FSRHSTLGELRLKLADVSMM 109 (118)
T ss_pred CC-CCCCceEEEEEEccccccCC
Confidence 97 58999999999999987444
No 18
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.80 E-value=1.6e-18 Score=136.66 Aligned_cols=119 Identities=19% Similarity=0.326 Sum_probs=96.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCC
Q 023810 6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEED 85 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~ 85 (277)
.|.|+|++|++|...+.. +.+||||++.++.....+|++ +.++.||.|||+|.|.+.. ....|.|+|||.+. .+
T Consensus 1 ~l~v~vi~a~~L~~~d~~-g~~DPYv~v~~~~~~~~kT~v-~~~t~nP~Wne~f~~~~~~---~~~~l~v~v~d~~~-~~ 74 (121)
T cd04054 1 SLYIRIVEGKNLPAKDIT-GSSDPYCIVKVDNEVIIRTAT-VWKTLNPFWGEEYTVHLPP---GFHTVSFYVLDEDT-LS 74 (121)
T ss_pred CEEEEEEEeeCCcCCCCC-CCCCceEEEEECCEeeeeeee-EcCCCCCcccceEEEeeCC---CCCEEEEEEEECCC-CC
Confidence 389999999999988865 899999999996444569999 7789999999999999865 24689999999986 46
Q ss_pred CCceeEEEEEecceeccccCCCceeeEEEEeec--CCCCCceEEEEEEEE
Q 023810 86 TKKLIGSAKLKLKDVINDVGLGERASLTLKLKR--PSGRPHGKVDVKVAV 133 (277)
Q Consensus 86 ~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~--~sg~~~G~L~l~v~~ 133 (277)
++++||++.+.+.++.... .....|+.|+. +.++..|+|.|.+++
T Consensus 75 ~d~~iG~~~~~~~~~~~~~---~~~~~W~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd04054 75 RDDVIGKVSLTREVISAHP---RGIDGWMNLTEVDPDEEVQGEIHLELSV 121 (121)
T ss_pred CCCEEEEEEEcHHHhccCC---CCCCcEEECeeeCCCCccccEEEEEEEC
Confidence 8899999999998876432 12356788853 456678999998863
No 19
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.80 E-value=3e-18 Score=136.00 Aligned_cols=119 Identities=18% Similarity=0.269 Sum_probs=95.0
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCC
Q 023810 4 RYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNE 83 (277)
Q Consensus 4 ~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~ 83 (277)
.+.|+|+|++|++|+.. +.+||||++.++...+.+|++ . ++.||.|||+|.|.+.... ...|+|.|||.+.
T Consensus 3 ~~~L~V~Vi~A~~L~~~----~~~DPYv~v~l~~~~~~kT~v-~-~~~nP~WnE~f~f~~~~~~--~~~l~v~v~d~~~- 73 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK----HVPHPYCVISLNEVKVARTKV-R-EGPNPVWSEEFVFDDLPPD--VNSFTISLSNKAK- 73 (126)
T ss_pred eeEEEEEEEEeeCCCCC----CCCCeeEEEEECCEeEEEeec-C-CCCCCccCCEEEEecCCCC--cCEEEEEEEECCC-
Confidence 35899999999999863 467999999996445578887 4 4799999999999875422 2468999999886
Q ss_pred CCCCceeEEEEEecceeccccCCCceeeEEEEeecCC---CCCceEEEEEEEEEe
Q 023810 84 EDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPS---GRPHGKVDVKVAVRE 135 (277)
Q Consensus 84 ~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~s---g~~~G~L~l~v~~~~ 135 (277)
..++++||++.|+|.++.... ....||.|...+ .+..|+|+|+++|.+
T Consensus 74 ~~~d~~iG~v~i~l~~l~~~~----~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 74 RSKDSEIAEVTVQLSKLQNGQ----ETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCCCCeEEEEEEEHhHccCCC----cccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 478999999999999887642 346788886543 456799999999976
No 20
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.79 E-value=1.5e-18 Score=136.45 Aligned_cols=105 Identities=26% Similarity=0.324 Sum_probs=85.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCcEEEEEEC----C--CCeEEeeecCCCCCCCccceeEEEecCCC-CCCCceEEEEEE
Q 023810 6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVD----P--NKKCSTKVDDEGDTCPYWDETLAIPLPGP-VDDDTTLIIDVV 78 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld----~--~~~~~T~v~~~~~~nP~WnE~f~f~v~~~-~l~~~~L~v~V~ 78 (277)
.|+|+|++|++|+..+ . +.+||||++++- + .++.+|++ ++++.||+|||+|.|.|... .+....|.|+||
T Consensus 1 kL~V~Vi~A~~L~~~d-~-g~~DPYVkV~l~g~~~~~k~~k~kTkv-~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~ 77 (120)
T cd08395 1 KVTVKVVAANDLKWQT-T-GMFRPFVEVNLIGPHLSDKKRKFATKS-KNNNWSPKYNETFQFILGNEDDPESYELHICVK 77 (120)
T ss_pred CEEEEEEECcCCCccc-C-CCCCCEEEEEEecCCCcccccEeeeEE-ecCCCCCccCcEEEEEeeCcCCCceeEEEEEEE
Confidence 4899999999998766 4 899999999982 1 23568999 78899999999999999753 345577999999
Q ss_pred EccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeec
Q 023810 79 HAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKR 118 (277)
Q Consensus 79 d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~ 118 (277)
|.+. .+.+++||++.|+|+++.... ....|++|.+
T Consensus 78 D~d~-~~~dd~IG~~~l~l~~~~~~~----~~~~w~~L~~ 112 (120)
T cd08395 78 DYCF-ARDDRLVGVTVLQLRDIAQAG----SCACWLPLGR 112 (120)
T ss_pred Eecc-cCCCCEEEEEEEEHHHCcCCC----cEEEEEECcC
Confidence 9884 467899999999999988653 2567888854
No 21
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.79 E-value=3.1e-18 Score=141.21 Aligned_cols=120 Identities=23% Similarity=0.343 Sum_probs=96.4
Q ss_pred eEEEEEEEEeeCCCCCCC-----------------------------CCCCCCcEEEEEECCCCeEEeeecCCCCCCCcc
Q 023810 5 YEVEVTITSAKDLKNVNW-----------------------------RHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYW 55 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~-----------------------------~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~W 55 (277)
.+|+|+|.+|++|.+.+. ..+.+||||+++++.....+|++ ++++.||+|
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v-~~~~~nP~W 85 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRV-IENSENPVW 85 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEE-eCCCCCCcc
Confidence 579999999999988652 23678999999996555579999 778899999
Q ss_pred ceeEEEecCCCCCCCceEEEEEEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCC---CceEEEEEEE
Q 023810 56 DETLAIPLPGPVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGR---PHGKVDVKVA 132 (277)
Q Consensus 56 nE~f~f~v~~~~l~~~~L~v~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~---~~G~L~l~v~ 132 (277)
||+|.|.+.. ....|.|+|||++.+ .+++||++.|+|+++... .....||+|....++ ..++|+|+++
T Consensus 86 nE~F~~~~~~---~~~~l~~~V~d~d~~--~~~~IG~~~i~l~~l~~g----~~~~~w~~L~~~~~~~~~~~~~l~v~~~ 156 (158)
T cd04015 86 NESFHIYCAH---YASHVEFTVKDNDVV--GAQLIGRAYIPVEDLLSG----EPVEGWLPILDSNGKPPKPGAKIRVSLQ 156 (158)
T ss_pred ceEEEEEccC---CCCEEEEEEEeCCCc--CCcEEEEEEEEhHHccCC----CCcceEEECcCCCCCCCCCCCEEEEEEE
Confidence 9999999865 245799999999863 468999999999998753 335688998765433 4689999999
Q ss_pred EE
Q 023810 133 VR 134 (277)
Q Consensus 133 ~~ 134 (277)
|.
T Consensus 157 f~ 158 (158)
T cd04015 157 FT 158 (158)
T ss_pred EC
Confidence 84
No 22
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.79 E-value=3.4e-18 Score=133.79 Aligned_cols=115 Identities=19% Similarity=0.327 Sum_probs=95.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCC
Q 023810 6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEED 85 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~ 85 (277)
.|+|+|++|++|+..+.. +.+||||++.+. ..+.+|++ ++++.||.|||+|.|.+.. + ...|.|+|||++. ..
T Consensus 2 ~l~v~v~~a~~L~~~~~~-~~~dPyv~v~~~-~~~~~T~~-~~~t~nP~W~e~f~~~~~~--~-~~~l~~~v~d~~~-~~ 74 (119)
T cd08377 2 FLQVKVIRASGLAAADIG-GKSDPFCVLELV-NARLQTHT-IYKTLNPEWNKIFTFPIKD--I-HDVLEVTVYDEDK-DK 74 (119)
T ss_pred EEEEEEEeeeCCCCCCCC-CCCCcEEEEEEC-CEeeecce-ecCCcCCccCcEEEEEecC--c-CCEEEEEEEECCC-CC
Confidence 689999999999987754 789999999995 55679998 7789999999999999864 2 4689999999986 46
Q ss_pred CCceeEEEEEecceeccccCCCceeeEEEEeecC--CCCCceEEEEEEEE
Q 023810 86 TKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP--SGRPHGKVDVKVAV 133 (277)
Q Consensus 86 ~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~--sg~~~G~L~l~v~~ 133 (277)
.+++||++.++|.++... ...||.|..+ ..+.+|+|.|++.|
T Consensus 75 ~~~~iG~~~~~l~~~~~~------~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 75 KPEFLGKVAIPLLSIKNG------ERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred CCceeeEEEEEHHHCCCC------CceEEECcccCCCCceeeEEEEEEEe
Confidence 789999999999988643 2357888654 45679999999987
No 23
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.79 E-value=2.8e-18 Score=134.64 Aligned_cols=114 Identities=17% Similarity=0.325 Sum_probs=93.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCcEEEEEECC--CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810 7 VEVTITSAKDLKNVNWRHGPNRPYAVLWVDP--NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE 84 (277)
Q Consensus 7 L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~--~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~ 84 (277)
|+|+|++|++|+..+.. +.+||||++++.. ..+.+|++ ++++.||+|||+|.|.+... ....|.|+|||++..
T Consensus 2 L~V~vi~a~~L~~~~~~-~~~Dpyv~v~~~~~~~~~~kT~v-v~~t~nP~Wne~f~f~i~~~--~~~~l~v~v~d~d~~- 76 (119)
T cd04036 2 LTVRVLRATNITKGDLL-STPDCYVELWLPTASDEKKRTKT-IKNSINPVWNETFEFRIQSQ--VKNVLELTVMDEDYV- 76 (119)
T ss_pred eEEEEEEeeCCCccCCC-CCCCcEEEEEEcCCCCccCccce-ecCCCCCccceEEEEEeCcc--cCCEEEEEEEECCCC-
Confidence 78999999999987754 8999999999942 45679998 77899999999999998753 345799999999863
Q ss_pred CCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEE
Q 023810 85 DTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAV 133 (277)
Q Consensus 85 ~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~ 133 (277)
.+++||++.++|.++..+ .....|++|... .+|+|+|.+.+
T Consensus 77 -~~~~iG~~~~~l~~l~~g----~~~~~~~~L~~~---~~g~l~~~~~~ 117 (119)
T cd04036 77 -MDDHLGTVLFDVSKLKLG----EKVRVTFSLNPQ---GKEELEVEFLL 117 (119)
T ss_pred -CCcccEEEEEEHHHCCCC----CcEEEEEECCCC---CCceEEEEEEe
Confidence 788999999999988653 346788888442 47888888876
No 24
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.79 E-value=4.5e-18 Score=132.65 Aligned_cols=115 Identities=22% Similarity=0.367 Sum_probs=95.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCC
Q 023810 6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEED 85 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~ 85 (277)
+|+|+|++|++|+..+.. +.+||||++++. +.+.+|++ +.++.||.|||+|.|.+... ....|.|+|||++. .+
T Consensus 1 ~~~V~v~~a~~L~~~~~~-~~~dPyv~v~~~-~~~~kT~v-~~~t~nP~Wne~f~f~~~~~--~~~~l~v~v~d~~~-~~ 74 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDN-GLSDPYVKFRLG-NEKYKSKV-CSKTLNPQWLEQFDLHLFDD--QSQILEIEVWDKDT-GK 74 (116)
T ss_pred CEEEEEEEEECCCCCCCC-CCCCcEEEEEEC-CEeEeccc-ccCCCCCceeEEEEEEecCC--CCCEEEEEEEECCC-CC
Confidence 478999999999988754 789999999994 67789998 78899999999999998752 35789999999986 46
Q ss_pred CCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEEE
Q 023810 86 TKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVR 134 (277)
Q Consensus 86 ~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~ 134 (277)
.+++||++.++|.++... .....|++|... +|+|.+.+.+.
T Consensus 75 ~~~~iG~~~~~l~~l~~~----~~~~~w~~L~~~----~G~~~~~~~~~ 115 (116)
T cd08376 75 KDEFIGRCEIDLSALPRE----QTHSLELELEDG----EGSLLLLLTLT 115 (116)
T ss_pred CCCeEEEEEEeHHHCCCC----CceEEEEEccCC----CcEEEEEEEec
Confidence 889999999999988753 335788998543 59998888764
No 25
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.78 E-value=1.3e-18 Score=141.41 Aligned_cols=93 Identities=25% Similarity=0.408 Sum_probs=84.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE 84 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~ 84 (277)
..|+|+|+++.+|..+++. +++||||++.+ ++++++|++ +++++||+|||+|+|.|.. ....|.++|||++. +
T Consensus 6 GLL~v~v~~g~~L~~rD~~-~sSDPyVVl~l-g~q~lkT~~-v~~n~NPeWNe~ltf~v~d---~~~~lkv~VyD~D~-f 78 (168)
T KOG1030|consen 6 GLLRVRVKRGKNLAIRDFL-GSSDPYVVLEL-GNQKLKTRV-VYKNLNPEWNEELTFTVKD---PNTPLKVTVYDKDT-F 78 (168)
T ss_pred eEEEEEEEeecCeeeeccc-cCCCCeEEEEE-CCeeeeeee-ecCCCCCcccceEEEEecC---CCceEEEEEEeCCC-C
Confidence 5799999999999998864 89999999999 589999998 8999999999999999987 25689999999997 5
Q ss_pred CCCceeEEEEEecceecccc
Q 023810 85 DTKKLIGSAKLKLKDVINDV 104 (277)
Q Consensus 85 ~~d~~iG~~~v~L~~l~~~~ 104 (277)
++++|||.+.|+|..+++..
T Consensus 79 s~dD~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 79 SSDDFMGEATIPLKPLLEAQ 98 (168)
T ss_pred CcccccceeeeccHHHHHHh
Confidence 89999999999999988763
No 26
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.78 E-value=5.6e-18 Score=133.60 Aligned_cols=117 Identities=18% Similarity=0.322 Sum_probs=94.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCC
Q 023810 6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEED 85 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~ 85 (277)
.|+|+|++|++|...+.. +.+||||++.+. ..+.+|++ +.++.||+|||+|.|.+... ....|.|+|||++. .+
T Consensus 1 ~L~v~vi~a~~L~~~d~~-~~~DPyv~v~~~-~~~~kT~v-~~~t~nP~Wne~f~f~~~~~--~~~~l~~~v~d~~~-~~ 74 (123)
T cd04025 1 RLRCHVLEARDLAPKDRN-GTSDPFVRVFYN-GQTLETSV-VKKSCYPRWNEVFEFELMEG--ADSPLSVEVWDWDL-VS 74 (123)
T ss_pred CEEEEEEEeeCCCCCCCC-CCcCceEEEEEC-CEEEecee-ecCCCCCccCcEEEEEcCCC--CCCEEEEEEEECCC-CC
Confidence 389999999999887754 789999999994 56778998 77899999999999999762 35679999999986 46
Q ss_pred CCceeEEEEEecceeccccCCCceeeEEEEeec------CCCCCceEEEEEEE
Q 023810 86 TKKLIGSAKLKLKDVINDVGLGERASLTLKLKR------PSGRPHGKVDVKVA 132 (277)
Q Consensus 86 ~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~------~sg~~~G~L~l~v~ 132 (277)
.++|||.+.++|.++..... ...||.|.. .+++..|.|.|.|+
T Consensus 75 ~~~~iG~~~~~l~~l~~~~~----~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 75 KNDFLGKVVFSIQTLQQAKQ----EEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred CCcEeEEEEEEHHHcccCCC----CCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 78999999999999865432 245777753 36677899998873
No 27
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.78 E-value=9.3e-18 Score=137.34 Aligned_cols=126 Identities=21% Similarity=0.323 Sum_probs=100.0
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCCCcEEEEEE----CCCCeEEeeecCCCCCCCccceeEEEecCCC------CCCCceEE
Q 023810 6 EVEVTITSAKDLKNVN-WRHGPNRPYAVLWV----DPNKKCSTKVDDEGDTCPYWDETLAIPLPGP------VDDDTTLI 74 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~-~~~g~~dpYv~v~l----d~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~------~l~~~~L~ 74 (277)
.++|+|..|++++... ..++..||||++++ +...+.+|++ +++++||+|||+|.|.|... .+.+..|.
T Consensus 3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v-~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~ 81 (155)
T cd08690 3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTST-IKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLK 81 (155)
T ss_pred ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCc-ccCCCCCcccceEEEEeccccchhhhhccCCcEE
Confidence 5788889998864322 23468999999997 3356789999 88999999999999999653 24466799
Q ss_pred EEEEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEEEec
Q 023810 75 IDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVRES 136 (277)
Q Consensus 75 v~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~~~ 136 (277)
|+|||.+.++.+|++||++.|+|+.+..+.. ...+++|.+......|+|.|+|+++++
T Consensus 82 ~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~----~~~~~~L~~~~k~~Gg~l~v~ir~r~p 139 (155)
T cd08690 82 FEVYHKGGFLRSDKLLGTAQVKLEPLETKCE----IHESVDLMDGRKATGGKLEVKVRLREP 139 (155)
T ss_pred EEEEeCCCcccCCCeeEEEEEEcccccccCc----ceEEEEhhhCCCCcCCEEEEEEEecCC
Confidence 9999998754679999999999999876532 345788876566678999999999886
No 28
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.77 E-value=3.1e-18 Score=136.39 Aligned_cols=109 Identities=22% Similarity=0.286 Sum_probs=88.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA 80 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~ 80 (277)
..|+|+|++|++|...+...+..||||++.+.+ ..+.+|++ +.++.||+|||+|.|.|....+.+..|.|.||+.
T Consensus 15 ~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v-~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~ 93 (128)
T cd08392 15 SCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAV-KKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHS 93 (128)
T ss_pred CEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeeccc-ccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeC
Confidence 579999999999987764337899999999943 23679999 7889999999999999977566678999999999
Q ss_pred cCCCCCCceeEEEEEecceeccccCCCceeeEEEEe
Q 023810 81 GNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKL 116 (277)
Q Consensus 81 ~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L 116 (277)
+. ..++++||++.|+|.++.... ..+....||.|
T Consensus 94 ~~-~~~~~~lG~~~i~L~~~~~~~-~~~~~~~W~~l 127 (128)
T cd08392 94 RT-LKRRVFLGEVLIPLADWDFED-TDSQRFLWYPL 127 (128)
T ss_pred CC-CcCcceEEEEEEEcCCcccCC-CCccccceEEC
Confidence 86 478899999999999985432 12345678876
No 29
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.77 E-value=7.8e-18 Score=133.32 Aligned_cols=120 Identities=20% Similarity=0.330 Sum_probs=97.2
Q ss_pred EEEEEEEEeeCCCCCCC--CCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCC
Q 023810 6 EVEVTITSAKDLKNVNW--RHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNE 83 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~--~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~ 83 (277)
.|+|+|++|++|...+. . +.+||||++.++ ..+.+|++ +.++.||.|||+|.|.+.. .....|.|+|||++.
T Consensus 2 ~l~v~v~~a~~L~~~~~~~~-~~~dPyv~v~~~-~~~~kT~~-~~~t~~P~Wne~f~~~~~~--~~~~~l~i~v~d~~~- 75 (128)
T cd04024 2 VLRVHVVEAKDLAAKDRSGK-GKSDPYAILSVG-AQRFKTQT-IPNTLNPKWNYWCEFPIFS--AQNQLLKLILWDKDR- 75 (128)
T ss_pred EEEEEEEEeeCCCcccCCCC-CCcCCeEEEEEC-CEEEecce-ecCCcCCccCCcEEEEecC--CCCCEEEEEEEECCC-
Confidence 68999999999988775 4 789999999994 67789998 7789999999999999975 345789999999986
Q ss_pred CCCCceeEEEEEecceeccccCCCceeeEEEEeecC----CCCCceEEEEEEE
Q 023810 84 EDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP----SGRPHGKVDVKVA 132 (277)
Q Consensus 84 ~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~----sg~~~G~L~l~v~ 132 (277)
...++|||++.|+|.++..... ......||.|... .....|+|.|+++
T Consensus 76 ~~~~~~lG~~~i~l~~~~~~~~-~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 76 FAGKDYLGEFDIALEEVFADGK-TGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred CCCCCcceEEEEEHHHhhcccc-cCccceeEEccCcccCccccccceEEEEEE
Confidence 4678999999999999875321 1224678888543 2347999999986
No 30
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.77 E-value=3e-18 Score=135.35 Aligned_cols=104 Identities=20% Similarity=0.200 Sum_probs=85.8
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEec-CCCCCCCceEEEEEEE
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPL-PGPVDDDTTLIIDVVH 79 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v-~~~~l~~~~L~v~V~d 79 (277)
..|+|+|++|++|...+ . +.+||||++++.+ ..+.+|++ ++++.||+|||+|.|.+ ....+.+..|.|+|||
T Consensus 13 ~~L~V~Vi~A~~L~~~~-~-~~~DpyVkv~l~~~~~~~~~~kT~v-~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d 89 (122)
T cd08381 13 GTLFVMVMHAKNLPLLD-G-SDPDPYVKTYLLPDPQKTTKRKTKV-VRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWS 89 (122)
T ss_pred CEEEEEEEEeeCCCCCC-C-CCCCCEEEEEEeeCCccCCceeCCc-cCCCCCCCcccEEEEecCChHHhCCCEEEEEEEe
Confidence 47999999999999887 4 8999999999942 34679999 78899999999999997 4334567889999999
Q ss_pred ccCCCCCCceeEEEEEecceeccccCCCceeeEEEEe
Q 023810 80 AGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKL 116 (277)
Q Consensus 80 ~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L 116 (277)
++. .++++|||++.|+|+++.... ....||.|
T Consensus 90 ~d~-~~~~~~lG~~~i~l~~l~~~~----~~~~W~~L 121 (122)
T cd08381 90 HDS-LVENEFLGGVCIPLKKLDLSQ----ETEKWYPL 121 (122)
T ss_pred CCC-CcCCcEEEEEEEeccccccCC----CccceEEC
Confidence 986 468999999999999987542 23567765
No 31
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.77 E-value=3.5e-18 Score=139.22 Aligned_cols=118 Identities=19% Similarity=0.279 Sum_probs=90.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC----CeEEeeecCCCCCCCccceeEEEecC-------------CCCC
Q 023810 6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN----KKCSTKVDDEGDTCPYWDETLAIPLP-------------GPVD 68 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~----~~~~T~v~~~~~~nP~WnE~f~f~v~-------------~~~l 68 (277)
.|.|+|++|++|.. .++.+||||++.+... .+.+|++ ++++.||+|||+|.|.+. ...+
T Consensus 1 kL~V~Vi~ArnL~~---~~g~sDPYV~V~l~~~~~k~~~~kT~v-~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~ 76 (148)
T cd04010 1 KLSVRVIECSDLAL---KNGTCDPYASVTLIYSNKKQDTKRTKV-KKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDA 76 (148)
T ss_pred CEEEEEEeCcCCCC---CCCCCCceEEEEEeCCcccCcccCCcc-EeCCCCCccceEEEEEEecccccccccccCCcccc
Confidence 38999999999987 2388999999999432 4678998 788999999999999984 1123
Q ss_pred CCceEEEEEEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCC------------CCceEEEEEE
Q 023810 69 DDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSG------------RPHGKVDVKV 131 (277)
Q Consensus 69 ~~~~L~v~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg------------~~~G~L~l~v 131 (277)
....|.|+||+++. ..+++|||++.|+|.++.... .....||.|...+. ...|.|+|+|
T Consensus 77 ~~~~L~i~V~d~~~-~~~ddfLG~v~i~l~~l~~~~---~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 77 EKLELRVDLWHASM-GGGDVFLGEVRIPLRGLDLQA---GSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred cEEEEEEEEEcCCC-CCCCceeEEEEEecccccccC---CcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 34679999999986 468999999999999987651 12357888854321 2357777765
No 32
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.77 E-value=3.1e-18 Score=135.59 Aligned_cols=106 Identities=18% Similarity=0.284 Sum_probs=87.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEEC--C---CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEE
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVD--P---NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVH 79 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld--~---~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d 79 (277)
..|+|+|++|++|...+. .+.+||||++.+. . ..+.+|++ .+++.||+|||+|.|.|..+++.+..|.|+||+
T Consensus 14 ~~L~V~V~~arnL~~~~~-~~~~dpyVKv~Llp~~~~~~~~~kT~v-~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~ 91 (124)
T cd08680 14 SSLVISVEQLRNLSALSI-PENSKVYVRVALLPCSSSTSCLFRTKA-LEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCS 91 (124)
T ss_pred CEEEEEEeEecCCccccc-CCCCCeEEEEEEccCCCCCCceEEcCc-cCCCCCCccccEEEEECCHHHhhcCEEEEEEEe
Confidence 579999999999988764 3789999999993 2 23689999 677999999999999998877888999999999
Q ss_pred ccCCCCCCceeEEEEEecceeccccCCCceeeEEEEe
Q 023810 80 AGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKL 116 (277)
Q Consensus 80 ~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L 116 (277)
.+. .+++++||.+.|+|.++.... +....||.|
T Consensus 92 ~~~-~~~~~~lG~~~i~L~~~~~~~---~~~~~Wy~l 124 (124)
T cd08680 92 VGP-DQQEECLGGAQISLADFESSE---EMSTKWYNL 124 (124)
T ss_pred CCC-CCceeEEEEEEEEhhhccCCC---ccccccccC
Confidence 986 478999999999999985432 223556654
No 33
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.77 E-value=1.8e-17 Score=132.45 Aligned_cols=117 Identities=22% Similarity=0.433 Sum_probs=94.9
Q ss_pred EEEEEEEEeeCCCCCCCC---------CCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEE
Q 023810 6 EVEVTITSAKDLKNVNWR---------HGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIID 76 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~---------~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~ 76 (277)
.|+|+|++|++|...+.. .+.+||||+++++.....+|++ +.++.||.|||+|.|.+.. .+.|.|+
T Consensus 5 ~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~-~~~t~~P~Wne~f~~~v~~----~~~l~~~ 79 (132)
T cd04014 5 TLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTST-KPKTNSPVWNEEFTTEVHN----GRNLELT 79 (132)
T ss_pred EEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeE-cCCCCCCCcceeEEEEcCC----CCEEEEE
Confidence 799999999999877641 2578999999997545568998 7789999999999999963 5789999
Q ss_pred EEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEEEe
Q 023810 77 VVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVRE 135 (277)
Q Consensus 77 V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~~ 135 (277)
||+++. ...+++||++.|+|+++.... +.....|+.|. .+|+|+|++++..
T Consensus 80 v~d~~~-~~~~~~iG~~~i~l~~l~~~~--~~~~~~w~~L~-----~~G~l~l~~~~~~ 130 (132)
T cd04014 80 VFHDAA-IGPDDFVANCTISFEDLIQRG--SGSFDLWVDLE-----PQGKLHVKIELKG 130 (132)
T ss_pred EEeCCC-CCCCceEEEEEEEhHHhcccC--CCcccEEEEcc-----CCcEEEEEEEEec
Confidence 999875 367899999999999988741 22246788884 4799999998864
No 34
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.76 E-value=2.3e-17 Score=130.91 Aligned_cols=116 Identities=28% Similarity=0.426 Sum_probs=95.6
Q ss_pred EEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCCCCcee
Q 023810 11 ITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEEDTKKLI 90 (277)
Q Consensus 11 v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~~d~~i 90 (277)
|++|++|.. .. +++||||++++. ..+.+|++ ++++.||+|||+|.|.+.........|.|+||+++. ...+++|
T Consensus 2 vi~a~~L~~--~~-g~~Dpyv~v~~~-~~~~kT~v-~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~-~~~d~~i 75 (127)
T cd08373 2 VVSLKNLPG--LK-GKGDRIAKVTFR-GVKKKTRV-LENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK-VGRNRLI 75 (127)
T ss_pred eEEeeCCcc--cC-CCCCCEEEEEEC-CEeeecce-eCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCC-CCCCceE
Confidence 689999987 33 899999999994 56789999 778899999999999996532346789999999986 4678999
Q ss_pred EEEEEecceeccccCCCceeeEEEEeecCCCC-CceEEEEEEEEEec
Q 023810 91 GSAKLKLKDVINDVGLGERASLTLKLKRPSGR-PHGKVDVKVAVRES 136 (277)
Q Consensus 91 G~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~-~~G~L~l~v~~~~~ 136 (277)
|++.++|+++... .....|++|.+++++ .+|+|.++++|.+.
T Consensus 76 G~~~~~l~~l~~~----~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~ 118 (127)
T cd08373 76 GSATVSLQDLVSE----GLLEVTEPLLDSNGRPTGATISLEVSYQPP 118 (127)
T ss_pred EEEEEEhhHcccC----CceEEEEeCcCCCCCcccEEEEEEEEEeCC
Confidence 9999999998864 235678888765554 58999999999876
No 35
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.76 E-value=1.4e-17 Score=132.62 Aligned_cols=108 Identities=20% Similarity=0.237 Sum_probs=85.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEEC--CCCeEEeeecCCCCCCCccceeEEE-ecCCCCCCCceEEEEEEEcc
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVD--PNKKCSTKVDDEGDTCPYWDETLAI-PLPGPVDDDTTLIIDVVHAG 81 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld--~~~~~~T~v~~~~~~nP~WnE~f~f-~v~~~~l~~~~L~v~V~d~~ 81 (277)
..|+|+|++|++|+..+...+.+||||++.+. ...+.+|++ ++++.||+|||+|.| .++...+.+..|.|+||+++
T Consensus 16 ~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v-~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d 94 (128)
T cd08388 16 KALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRV-LRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFD 94 (128)
T ss_pred CEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccE-EcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcC
Confidence 58999999999999876433789999999983 345679999 788999999999999 46544455668999999998
Q ss_pred CCCCCCceeEEEEEecceeccccCCCceeeEEEEe
Q 023810 82 NEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKL 116 (277)
Q Consensus 82 ~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L 116 (277)
. .+++++||++.|+|+++.... ++...+|+.|
T Consensus 95 ~-~~~d~~lG~~~i~L~~l~~~~--~~~~~~~~~~ 126 (128)
T cd08388 95 R-YSRDDVIGEVVCPLAGADLLN--EGELLVSREI 126 (128)
T ss_pred C-CCCCceeEEEEEeccccCCCC--CceEEEEEec
Confidence 6 478999999999999986542 2335667765
No 36
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.76 E-value=1.9e-17 Score=134.37 Aligned_cols=106 Identities=22% Similarity=0.219 Sum_probs=85.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC--C--CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEE-
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP--N--KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVH- 79 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~--~--~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d- 79 (277)
..|+|+|++|++|...+...+.+||||++++.+ . .+.+|++ +++++||+|||+|.|.+. +.+..|.|+||+
T Consensus 29 ~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v-~kktlnPvfNE~F~f~v~---l~~~~L~v~V~~d 104 (146)
T cd04028 29 GQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKI-ARKTLDPLYQQQLVFDVS---PTGKTLQVIVWGD 104 (146)
T ss_pred CEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceecee-cCCCCCCccCCeEEEEEc---CCCCEEEEEEEeC
Confidence 479999999999987542337899999999932 2 3779999 789999999999999997 357789999995
Q ss_pred ccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecC
Q 023810 80 AGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP 119 (277)
Q Consensus 80 ~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~ 119 (277)
.+. ..+++|||++.|+|+++... .....||.|...
T Consensus 105 ~~~-~~~~~~iG~~~i~L~~l~~~----~~~~~Wy~L~~~ 139 (146)
T cd04028 105 YGR-MDKKVFMGVAQILLDDLDLS----NLVIGWYKLFPT 139 (146)
T ss_pred CCC-CCCCceEEEEEEEcccccCC----CCceeEEecCCc
Confidence 554 56889999999999997543 224678998654
No 37
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.75 E-value=4.8e-17 Score=130.55 Aligned_cols=126 Identities=16% Similarity=0.209 Sum_probs=96.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCC-----CC--CCceEEEEE
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGP-----VD--DDTTLIIDV 77 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~-----~l--~~~~L~v~V 77 (277)
+.|+|+|++|++|...+.. +.+||||++.+. ..+.+|++ ++++.||.|||+|.|.+... .+ ....|.|+|
T Consensus 1 ~~l~v~V~~a~~L~~~d~~-g~~dpyv~v~~~-~~~~kT~v-~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V 77 (135)
T cd04017 1 FQLRAYIYQARDLLAADKS-GLSDPFARVSFL-NQSQETEV-IKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVEL 77 (135)
T ss_pred CEEEEEEEEeecCcCCCCC-CCCCCEEEEEEC-CeeeEeee-EcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEE
Confidence 3689999999999887754 899999999995 67789999 78899999999999975320 01 124699999
Q ss_pred EEccCCCCCCceeEEEEE-ecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEEEec
Q 023810 78 VHAGNEEDTKKLIGSAKL-KLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVRES 136 (277)
Q Consensus 78 ~d~~~~~~~d~~iG~~~v-~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~~~ 136 (277)
||++. .++++|||++.+ ++..+... ........|+.|. +.+..+|+|.|++++.+.
T Consensus 78 ~d~d~-~~~d~~iG~~~i~~~~~~~~~-~~~~~~~~W~~L~-~~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 78 FDQDS-VGKDEFLGRSVAKPLVKLDLE-EDFPPKLQWFPIY-KGGQSAGELLAAFELIEV 134 (135)
T ss_pred EeCcC-CCCCccceEEEeeeeeecccC-CCCCCCceEEEee-cCCCchhheeEEeEEEEe
Confidence 99986 467899999987 44443332 1233456889985 455679999999999864
No 38
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.75 E-value=5.3e-17 Score=128.67 Aligned_cols=118 Identities=26% Similarity=0.375 Sum_probs=93.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCC
Q 023810 6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEED 85 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~ 85 (277)
.|+|+|++|+ |...+.. +.+||||+++++...+.+|++ ++++.||+|||+|.|.+.. ...|.|+|||.+. ..
T Consensus 3 ~L~V~i~~a~-l~~~~~~-~~~dPyv~v~~~~~~~~kT~v-~~~t~~P~Wne~f~~~~~~----~~~l~~~V~d~~~-~~ 74 (125)
T cd04021 3 QLQITVESAK-LKSNSKS-FKPDPYVEVTVDGQPPKKTEV-SKKTSNPKWNEHFTVLVTP----QSTLEFKVWSHHT-LK 74 (125)
T ss_pred eEEEEEEeeE-CCCCCcC-CCCCeEEEEEECCcccEEeee-eCCCCCCccccEEEEEeCC----CCEEEEEEEeCCC-CC
Confidence 6899999999 4444433 789999999996444789998 7789999999999999864 4689999999986 46
Q ss_pred CCceeEEEEEecceeccccCCC-ceeeEEEEeecCC---CCCceEEEEEE
Q 023810 86 TKKLIGSAKLKLKDVINDVGLG-ERASLTLKLKRPS---GRPHGKVDVKV 131 (277)
Q Consensus 86 ~d~~iG~~~v~L~~l~~~~~~~-~~~~~~~~L~~~s---g~~~G~L~l~v 131 (277)
.+++||++.++|.++....... +....|++|.+++ +...|+|.+.+
T Consensus 75 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 8899999999999988653311 2235688887654 47799999875
No 39
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.75 E-value=5.5e-17 Score=130.51 Aligned_cols=118 Identities=17% Similarity=0.332 Sum_probs=93.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC------------CeEEeeecCCCCCCCcc-ceeEEEecCCCCCCCce
Q 023810 6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN------------KKCSTKVDDEGDTCPYW-DETLAIPLPGPVDDDTT 72 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~------------~~~~T~v~~~~~~nP~W-nE~f~f~v~~~~l~~~~ 72 (277)
+..|++++|++|+ .+++ +++||||++.+.+. .+.+|++ ++++.||+| ||+|.|.+.. ...
T Consensus 2 ~~~~~~~~A~~L~-~~~f-g~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v-~~~tlnP~W~nE~f~f~v~~----~~~ 74 (137)
T cd08691 2 SFSLSGLQARNLK-KGMF-FNPDPYVKISIQPGKRHIFPALPHHGQECRTSI-VENTINPVWHREQFVFVGLP----TDV 74 (137)
T ss_pred EEEEEEEEeCCCC-CccC-CCCCceEEEEEECCCcccccccccccceeeeee-EcCCCCCceEceEEEEEcCC----CCE
Confidence 5789999999998 6666 89999999999432 2679999 788999999 9999999964 357
Q ss_pred EEEEEEEccCCCC--CCceeEEEEEecceeccccCCCceeeEEEEeecC--CCCCceEEEEEE
Q 023810 73 LIIDVVHAGNEED--TKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP--SGRPHGKVDVKV 131 (277)
Q Consensus 73 L~v~V~d~~~~~~--~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~--sg~~~G~L~l~v 131 (277)
|.|+|||+..... .+++||++.|+|.+|+..... .....+++|.+. .++.+|+|.+++
T Consensus 75 L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~-~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 75 LEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAI-GDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEEEEEecCCCCCccCCceEEEEEEEHHHhcccccC-CceEEEEECCcCCCCCcEEEEEEEEe
Confidence 9999999753211 268999999999999876432 235778888653 567889999876
No 40
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.75 E-value=7.5e-17 Score=127.57 Aligned_cols=121 Identities=21% Similarity=0.284 Sum_probs=95.8
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC--CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccC
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN--KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGN 82 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~--~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~ 82 (277)
+.|+|+|++|++|+..+.. +.+||||++.+... ...+|++ +.++.||.|||+|.|.+... ....|.|+||+++.
T Consensus 1 ~~~~V~v~~a~~L~~~~~~-~~~Dpyv~v~~~~~~~~~~kT~~-~~~t~~P~Wne~f~f~i~~~--~~~~L~i~v~d~d~ 76 (126)
T cd04043 1 HLFTIRIVRAENLKADSSN-GLSDPYVTLVDTNGKRRIAKTRT-IYDTLNPRWDEEFELEVPAG--EPLWISATVWDRSF 76 (126)
T ss_pred CEEEEEEEEeECCCCCCCC-CCCCceEEEEECCCCeeeecccE-ecCCCCCcccceEEEEcCCC--CCCEEEEEEEECCC
Confidence 3689999999999988754 89999999998533 3569998 67899999999999999762 35689999999986
Q ss_pred CCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEEEec
Q 023810 83 EEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVRES 136 (277)
Q Consensus 83 ~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~~~ 136 (277)
...+++||++.|+|.++..... +.....|+.|.. +|+|.|.+++...
T Consensus 77 -~~~~~~iG~~~i~l~~~~~~~~-~~~~~~w~~l~~-----~g~i~l~~~~~~~ 123 (126)
T cd04043 77 -VGKHDLCGRASLKLDPKRFGDD-GLPREIWLDLDT-----QGRLLLRVSMEGE 123 (126)
T ss_pred -CCCCceEEEEEEecCHHHcCCC-CCCceEEEEcCC-----CCeEEEEEEEeee
Confidence 3588999999999987644321 233567888843 6899998888643
No 41
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.75 E-value=1.4e-17 Score=128.95 Aligned_cols=108 Identities=16% Similarity=0.210 Sum_probs=87.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCcc-ceeEEEecCCCCCCCceEEEEEEEccCCCC
Q 023810 7 VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYW-DETLAIPLPGPVDDDTTLIIDVVHAGNEED 85 (277)
Q Consensus 7 L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~W-nE~f~f~v~~~~l~~~~L~v~V~d~~~~~~ 85 (277)
|+|+|++|++|+..+...+.+||||++.+. ..+.+|++ +.++.||.| ||+|.|.+....+.+..|.|+|||++. .+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~-~~~~kT~v-~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~-~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFG-STTYKTDV-VKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT-YS 77 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEEC-CeeEecce-ecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC-CC
Confidence 689999999998766434789999999995 57889999 778999999 999999997644455789999999986 46
Q ss_pred CCceeEEEEEecceeccccCCCceeeEEEEeec
Q 023810 86 TKKLIGSAKLKLKDVINDVGLGERASLTLKLKR 118 (277)
Q Consensus 86 ~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~ 118 (277)
++++||++.++|.++..... ......||.|.+
T Consensus 78 ~~~~iG~~~~~l~~l~~~~~-~~~~~~w~~l~~ 109 (110)
T cd08688 78 ANDAIGKVYIDLNPLLLKDS-VSQISGWFPIYD 109 (110)
T ss_pred CCCceEEEEEeHHHhcccCC-ccccCCeEEccc
Confidence 88999999999999987421 223567887743
No 42
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.75 E-value=3.5e-17 Score=128.23 Aligned_cols=115 Identities=18% Similarity=0.307 Sum_probs=93.8
Q ss_pred EEEEEEEEeeCCCCCCCC-----CCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810 6 EVEVTITSAKDLKNVNWR-----HGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA 80 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~-----~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~ 80 (277)
+|+|+|++|++|...+.. .+.+||||++.++ ..+.+|++ ++++.||+|||+|.|.+... ....|.|+|||+
T Consensus 2 ~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~-~~~~kT~~-~~~t~~P~W~e~f~~~v~~~--~~~~l~i~v~d~ 77 (121)
T cd08391 2 VLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVG-AQTFKSKV-IKENLNPKWNEVYEAVVDEV--PGQELEIELFDE 77 (121)
T ss_pred eEEEEEEEccCCcccccccccCCCCCcCCEEEEEEC-CEeEEccc-cCCCCCCcccceEEEEeCCC--CCCEEEEEEEec
Confidence 689999999999876532 2578999999995 57789998 77899999999999999752 457899999999
Q ss_pred cCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEE
Q 023810 81 GNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAV 133 (277)
Q Consensus 81 ~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~ 133 (277)
+. . .+++||.+.|+|.++.... ....||.|... .+|+|.|++++
T Consensus 78 ~~-~-~~~~iG~~~i~l~~l~~~~----~~~~w~~L~~~---~~G~~~~~~~~ 121 (121)
T cd08391 78 DP-D-KDDFLGRLSIDLGSVEKKG----FIDEWLPLEDV---KSGRLHLKLEW 121 (121)
T ss_pred CC-C-CCCcEEEEEEEHHHhcccC----ccceEEECcCC---CCceEEEEEeC
Confidence 86 3 7899999999999987642 24678888542 57999988764
No 43
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.74 E-value=2.3e-17 Score=130.26 Aligned_cols=106 Identities=20% Similarity=0.293 Sum_probs=88.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE--CCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccC
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWV--DPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGN 82 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l--d~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~ 82 (277)
..|.|+|++|++|...+.. +.+||||++.+ +...+.+|++ ++++.||+|||+|.|.+....+....|.|+|||.+.
T Consensus 16 ~~L~V~v~~a~~L~~~d~~-g~~dpyv~v~l~~~~~~~~kT~v-~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~ 93 (124)
T cd08387 16 GILNVKLIQARNLQPRDFS-GTADPYCKVRLLPDRSNTKQSKI-HKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ 93 (124)
T ss_pred CEEEEEEEEeeCCCCCCCC-CCCCCeEEEEEecCCCCcEeCce-EcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC
Confidence 5799999999999987754 88999999999 3355689999 788999999999999997655556789999999986
Q ss_pred CCCCCceeEEEEEecceeccccCCCceeeEEEEee
Q 023810 83 EEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLK 117 (277)
Q Consensus 83 ~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~ 117 (277)
..++++||++.|+|+++.... ....||.|.
T Consensus 94 -~~~~~~iG~~~i~l~~~~~~~----~~~~W~~l~ 123 (124)
T cd08387 94 -FSRDECIGVVELPLAEVDLSE----KLDLWRKIQ 123 (124)
T ss_pred -CCCCceeEEEEEecccccCCC----CcceEEECc
Confidence 468899999999999987553 246788763
No 44
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.74 E-value=3.7e-17 Score=127.19 Aligned_cols=114 Identities=26% Similarity=0.466 Sum_probs=94.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCCC
Q 023810 7 VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEEDT 86 (277)
Q Consensus 7 L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~~ 86 (277)
|+|+|++|++|...+.. +.+||||++.++.....+|++ +.++.||.|||+|.|.+... ....|.|+|||.+. ...
T Consensus 1 l~v~vi~a~~L~~~~~~-~~~dpyv~v~~~~~~~~~T~v-~~~~~~P~Wne~f~~~~~~~--~~~~l~~~v~d~~~-~~~ 75 (115)
T cd04040 1 LTVDVISAENLPSADRN-GKSDPFVKFYLNGEKVFKTKT-IKKTLNPVWNESFEVPVPSR--VRAVLKVEVYDWDR-GGK 75 (115)
T ss_pred CEEEEEeeeCCCCCCCC-CCCCCeEEEEECCCcceeece-ecCCCCCcccccEEEEeccC--CCCEEEEEEEeCCC-CCC
Confidence 68999999999987754 789999999997556679999 78899999999999998752 35789999999986 468
Q ss_pred CceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEE
Q 023810 87 KKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDV 129 (277)
Q Consensus 87 d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l 129 (277)
+++||++.++|.++... .....|+.|....+...|.|.+
T Consensus 76 ~~~iG~~~~~l~~l~~~----~~~~~~~~L~~~g~~~~~~~~~ 114 (115)
T cd04040 76 DDLLGSAYIDLSDLEPE----ETTELTLPLDGQGGGKLGAVFL 114 (115)
T ss_pred CCceEEEEEEHHHcCCC----CcEEEEEECcCCCCccCceEEc
Confidence 89999999999998763 2357788887777777888764
No 45
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.74 E-value=2e-17 Score=131.11 Aligned_cols=106 Identities=20% Similarity=0.284 Sum_probs=86.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA 80 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~ 80 (277)
..|.|+|++|++|...+...+.+||||++.+.+ ..+.+|++ ++++.||+|||+|.|.|....+.+..|.|+|||.
T Consensus 15 ~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v-~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~ 93 (125)
T cd04029 15 QSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSI-KRNTTNPVYNETLKYSISHSQLETRTLQLSVWHY 93 (125)
T ss_pred CeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeee-eeCCCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence 579999999999987654347899999999932 23578998 7889999999999999976556677899999999
Q ss_pred cCCCCCCceeEEEEEecceeccccCCCceeeEEEEe
Q 023810 81 GNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKL 116 (277)
Q Consensus 81 ~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L 116 (277)
+. .+++++||++.|+|.++..... ...||+|
T Consensus 94 ~~-~~~~~~lG~~~i~l~~~~~~~~----~~~w~~l 124 (125)
T cd04029 94 DR-FGRNTFLGEVEIPLDSWNFDSQ----HEECLPL 124 (125)
T ss_pred CC-CCCCcEEEEEEEeCCcccccCC----cccEEEC
Confidence 86 4788999999999999876532 3456665
No 46
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.74 E-value=2.6e-17 Score=126.36 Aligned_cols=102 Identities=24% Similarity=0.330 Sum_probs=85.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCC
Q 023810 6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEED 85 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~ 85 (277)
.|.|+|++|++|+..+.. +.+||||++++. +.+.+|++ +.++.||+|||+|.|.+.. .+...|.|+||+++.
T Consensus 1 ~L~V~v~~A~~L~~~~~~-~~~dpyv~v~~~-~~~~kT~v-~~~t~nP~Wne~f~f~v~~--~~~~~l~v~v~d~~~--- 72 (105)
T cd04050 1 LLFVYLDSAKNLPLAKST-KEPSPYVELTVG-KTTQKSKV-KERTNNPVWEEGFTFLVRN--PENQELEIEVKDDKT--- 72 (105)
T ss_pred CEEEEEeeecCCCCcccC-CCCCcEEEEEEC-CEEEeCcc-ccCCCCCcccceEEEEeCC--CCCCEEEEEEEECCC---
Confidence 389999999999987754 899999999995 57789998 7789999999999999975 235689999999873
Q ss_pred CCceeEEEEEecceeccccCCCceeeEEEEeec
Q 023810 86 TKKLIGSAKLKLKDVINDVGLGERASLTLKLKR 118 (277)
Q Consensus 86 ~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~ 118 (277)
+++||++.|+|.++.... +.....||+|..
T Consensus 73 -~~~iG~~~i~l~~l~~~~--~~~~~~w~~L~~ 102 (105)
T cd04050 73 -GKSLGSLTLPLSELLKEP--DLTLDQPFPLDN 102 (105)
T ss_pred -CCccEEEEEEHHHhhccc--cceeeeeEecCC
Confidence 689999999999998653 344678898843
No 47
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.74 E-value=5.4e-17 Score=128.93 Aligned_cols=114 Identities=15% Similarity=0.364 Sum_probs=91.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCC--
Q 023810 6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNE-- 83 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~-- 83 (277)
.|+|+|++|++|...+.. +.+||||++.+. ..+.+|++ +.++.||.|||+|.|.+.. ....|.|+|||.+..
T Consensus 2 ~L~V~vi~a~~L~~~d~~-g~~DPyv~v~~~-~~~~kT~~-v~~t~~P~Wne~f~f~~~~---~~~~l~i~v~d~d~~~~ 75 (127)
T cd04027 2 KISITVVCAQGLIAKDKT-GTSDPYVTVQVG-KTKKRTKT-IPQNLNPVWNEKFHFECHN---SSDRIKVRVWDEDDDIK 75 (127)
T ss_pred eEEEEEEECcCCcCCCCC-CCcCcEEEEEEC-CEeeecce-ecCCCCCccceEEEEEecC---CCCEEEEEEEECCCCcc
Confidence 689999999999988865 889999999994 56779998 7789999999999999864 245799999998742
Q ss_pred --------CCCCceeEEEEEecceeccccCCCceeeEEEEeecC--CCCCceEEEEEE
Q 023810 84 --------EDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP--SGRPHGKVDVKV 131 (277)
Q Consensus 84 --------~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~--sg~~~G~L~l~v 131 (277)
...+++||.+.|+|.++... ...||.|... ....+|+|.|++
T Consensus 76 ~~~~~~~~~~~~~~iG~~~i~l~~~~~~------~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 76 SRLKQKFTRESDDFLGQTIIEVRTLSGE------MDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred cccceeccccCCCcceEEEEEhHHccCC------CCeEEECccCCCCCcEeEEEEEEC
Confidence 13688999999999886422 3478888654 345799999874
No 48
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.74 E-value=2.6e-17 Score=130.42 Aligned_cols=106 Identities=19% Similarity=0.233 Sum_probs=86.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA 80 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~ 80 (277)
..|+|+|++|++|...+...+.+||||++.+.+ ..+.+|++ ++++.||+|||+|.|.+....+.+..|.|+|||.
T Consensus 15 ~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v-~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~ 93 (125)
T cd08393 15 RELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSV-KKKTLNPVFNETLRYKVEREELPTRVLNLSVWHR 93 (125)
T ss_pred CEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCcc-CcCCCCCccCceEEEECCHHHhCCCEEEEEEEeC
Confidence 479999999999998774236899999999932 24579999 7889999999999999976556678899999999
Q ss_pred cCCCCCCceeEEEEEecceeccccCCCceeeEEEEe
Q 023810 81 GNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKL 116 (277)
Q Consensus 81 ~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L 116 (277)
+. .+++++||++.|+|.++.... ....||.|
T Consensus 94 ~~-~~~~~~iG~~~i~L~~~~~~~----~~~~W~~L 124 (125)
T cd08393 94 DS-LGRNSFLGEVEVDLGSWDWSN----TQPTWYPL 124 (125)
T ss_pred CC-CCCCcEeEEEEEecCccccCC----CCcceEEC
Confidence 86 478899999999999985442 23456665
No 49
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.73 E-value=3.9e-17 Score=129.28 Aligned_cols=107 Identities=23% Similarity=0.304 Sum_probs=87.3
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEE
Q 023810 4 RYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVH 79 (277)
Q Consensus 4 ~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d 79 (277)
...|+|+|++|++|...+.. +..||||++.+.+ ..+.+|++ ++++.||+|||+|.|.+....+....|.|+||+
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~kT~v-~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~ 92 (127)
T cd04030 15 RQKLIVTVHKCRNLPPCDSS-DIPDPYVRLYLLPDKSKSTRRKTSV-KKDNLNPVFDETFEFPVSLEELKRRTLDVAVKN 92 (127)
T ss_pred CCEEEEEEEEEECCCCccCC-CCCCceEEEEEEcCCCCCceEeccc-ccCCCCCEECeEEEEecCHHHhcCCEEEEEEEE
Confidence 35899999999999988754 8999999999832 45689999 788999999999999997654556789999999
Q ss_pred ccCCC-CCCceeEEEEEecceeccccCCCceeeEEEEe
Q 023810 80 AGNEE-DTKKLIGSAKLKLKDVINDVGLGERASLTLKL 116 (277)
Q Consensus 80 ~~~~~-~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L 116 (277)
.+.+. +++++||++.|+|.++.... ....||.|
T Consensus 93 ~~~~~~~~~~~iG~~~i~l~~l~~~~----~~~~W~~L 126 (127)
T cd04030 93 SKSFLSREKKLLGQVLIDLSDLDLSK----GFTQWYDL 126 (127)
T ss_pred CCcccCCCCceEEEEEEecccccccC----CccceEEC
Confidence 88532 57899999999999986542 24567765
No 50
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.73 E-value=4.9e-17 Score=128.35 Aligned_cols=105 Identities=26% Similarity=0.351 Sum_probs=86.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC--CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccC
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP--NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGN 82 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~--~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~ 82 (277)
..|+|+|++|++|...+.. +.+||||++.+.+ ..+.+|++ ++++.||+|||+|.|.+....+....|.|+|||.+.
T Consensus 16 ~~L~V~v~~a~~L~~~d~~-~~~dpyv~v~l~~~~~~~~kT~v-~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~ 93 (124)
T cd08385 16 NQLTVGIIQAADLPAMDMG-GTSDPYVKVYLLPDKKKKFETKV-HRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR 93 (124)
T ss_pred CEEEEEEEEeeCCCCccCC-CCCCCEEEEEEEcCCCCceeccc-CcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC
Confidence 4799999999999987754 7899999999843 35679998 788999999999999987544456789999999986
Q ss_pred CCCCCceeEEEEEecceeccccCCCceeeEEEEe
Q 023810 83 EEDTKKLIGSAKLKLKDVINDVGLGERASLTLKL 116 (277)
Q Consensus 83 ~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L 116 (277)
..++++||++.|+|+++... .....|+.|
T Consensus 94 -~~~~~~lG~~~i~l~~~~~~----~~~~~W~~l 122 (124)
T cd08385 94 -FSKHDLIGEVRVPLLTVDLG----HVTEEWRDL 122 (124)
T ss_pred -CCCCceeEEEEEecCcccCC----CCcceEEEc
Confidence 46889999999999998653 224567766
No 51
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.73 E-value=4.9e-17 Score=125.71 Aligned_cols=95 Identities=15% Similarity=0.203 Sum_probs=79.4
Q ss_pred EEEEEEEEeeCCCCCCCCC---CCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccC
Q 023810 6 EVEVTITSAKDLKNVNWRH---GPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGN 82 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~~---g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~ 82 (277)
+|.|+|++|++|+..+... +.+||||++.+. ..+.+|++ ++++.||+|||+|.|.+.... ....|.|+|||++.
T Consensus 2 ~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~-~~~~kT~v-~~~t~nPvWne~f~f~v~~~~-~~~~L~~~V~D~d~ 78 (108)
T cd04039 2 VVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG-RRVFRTSW-RRHTLNPVFNERLAFEVYPHE-KNFDIQFKVLDKDK 78 (108)
T ss_pred EEEEEEEeeeCCCCccccCCCCCccCceEEEEEC-CEeEeeee-ecCCCCCcccceEEEEEeCcc-CCCEEEEEEEECCC
Confidence 7999999999998765321 258999999994 66789999 788999999999999986532 24579999999986
Q ss_pred CCCCCceeEEEEEecceecccc
Q 023810 83 EEDTKKLIGSAKLKLKDVINDV 104 (277)
Q Consensus 83 ~~~~d~~iG~~~v~L~~l~~~~ 104 (277)
.+++++||++.|+|++|..+.
T Consensus 79 -~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 79 -FSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred -CCCCcceEEEEEEHHHHHhhC
Confidence 478999999999999998764
No 52
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.73 E-value=2.9e-17 Score=129.18 Aligned_cols=104 Identities=18% Similarity=0.279 Sum_probs=82.8
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA 80 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~ 80 (277)
..|+|+|++|++|...+ . +.+||||++.+.+ ..+.+|++ +.++.||+|||+|.|.+....+ ...|.|+||+.
T Consensus 12 ~~L~V~Vi~ar~L~~~~-~-g~~dpYVkv~l~p~~~~~~~~kT~v-~~~t~~P~~nE~F~f~v~~~~~-~~~l~v~V~~~ 87 (119)
T cd08685 12 RKLTLHVLEAKGLRSTN-S-GTCNSYVKISLSPDKEVRFRQKTST-VPDSANPLFHETFSFDVNERDY-QKRLLVTVWNK 87 (119)
T ss_pred CEEEEEEEEEECCCCCC-C-CCCCeeEEEEEEeCCCCcceEeCcc-ccCCCCCccccEEEEEcChHHh-CCEEEEEEECC
Confidence 57999999999998876 4 7899999999943 24568998 7789999999999999976444 34688999998
Q ss_pred cCCCCCCceeEEEEEecceeccccCCCceeeEEEEe
Q 023810 81 GNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKL 116 (277)
Q Consensus 81 ~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L 116 (277)
+....+++|||.+.|+|.++.... ....||.|
T Consensus 88 ~~~~~~~~~lG~~~i~l~~~~~~~----~~~~Wy~l 119 (119)
T cd08685 88 LSKSRDSGLLGCMSFGVKSIVNQK----EISGWYYL 119 (119)
T ss_pred CCCcCCCEEEEEEEecHHHhccCc----cccceEeC
Confidence 864335789999999999997432 23567654
No 53
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.73 E-value=5.7e-17 Score=125.70 Aligned_cols=106 Identities=25% Similarity=0.323 Sum_probs=86.6
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCC--CCCCceEEEEEEEcc
Q 023810 4 RYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGP--VDDDTTLIIDVVHAG 81 (277)
Q Consensus 4 ~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~--~l~~~~L~v~V~d~~ 81 (277)
.+.|+|+|++|++|. .+.+||||+++++ +.+.+|++ ++++.||.|||+|.|.+... .+.+..|.|+|||.+
T Consensus 3 ~~~l~V~v~~a~~L~-----~~~~dpyv~v~~~-~~~~kT~~-~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~ 75 (111)
T cd04011 3 DFQVRVRVIEARQLV-----GGNIDPVVKVEVG-GQKKYTSV-KKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSR 75 (111)
T ss_pred cEEEEEEEEEcccCC-----CCCCCCEEEEEEC-CEeeeeeE-EeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCc
Confidence 367999999999998 2688999999996 66778998 77889999999999997542 234568999999998
Q ss_pred CCCCCCceeEEEEEecceeccccCCCceeeEEEEeec
Q 023810 82 NEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKR 118 (277)
Q Consensus 82 ~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~ 118 (277)
.+ .++++||++.|+|+++..... ......|+.|..
T Consensus 76 ~~-~~~~~iG~~~i~l~~v~~~~~-~~~~~~w~~L~~ 110 (111)
T cd04011 76 SL-RSDTLIGSFKLDVGTVYDQPD-HAFLRKWLLLTD 110 (111)
T ss_pred cc-ccCCccEEEEECCccccCCCC-CcceEEEEEeeC
Confidence 64 678999999999999987643 334578888865
No 54
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.72 E-value=8.6e-17 Score=127.01 Aligned_cols=105 Identities=26% Similarity=0.410 Sum_probs=84.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCC-CCceEEEEEEEccCCC
Q 023810 6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVD-DDTTLIIDVVHAGNEE 84 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l-~~~~L~v~V~d~~~~~ 84 (277)
.|+|+|++|++|+..+.. +++||||++++. ..+.+|++..+++.||.|||+|.|.+..... ....|.|+|||.+. .
T Consensus 2 ~L~V~V~~A~~L~~~~~~-~~~dpyv~v~~~-~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~-~ 78 (124)
T cd04049 2 TLEVLLISAKGLQDTDFL-GKIDPYVIIQCR-TQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN-F 78 (124)
T ss_pred eEEEEEEecCCCCCCCCC-CCcCceEEEEEC-CEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc-C
Confidence 689999999999988765 899999999995 5567888844458999999999999976321 24679999999986 4
Q ss_pred CCCceeEEEEEecceeccccCCCceeeEEEEee
Q 023810 85 DTKKLIGSAKLKLKDVINDVGLGERASLTLKLK 117 (277)
Q Consensus 85 ~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~ 117 (277)
..+++||++.|+|.++...... ..|+.|.
T Consensus 79 ~~d~~iG~~~i~l~~l~~~~~~----~~~~~l~ 107 (124)
T cd04049 79 SDDDFIGEATIHLKGLFEEGVE----PGTAELV 107 (124)
T ss_pred CCCCeEEEEEEEhHHhhhCCCC----cCceEee
Confidence 6789999999999999875432 4455553
No 55
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.72 E-value=6.6e-17 Score=127.97 Aligned_cols=104 Identities=19% Similarity=0.275 Sum_probs=85.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEEC--CCCeEEeeecCCCCCCCccceeEEEe-cCCCCCCCceEEEEEEEcc
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVD--PNKKCSTKVDDEGDTCPYWDETLAIP-LPGPVDDDTTLIIDVVHAG 81 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld--~~~~~~T~v~~~~~~nP~WnE~f~f~-v~~~~l~~~~L~v~V~d~~ 81 (277)
..|+|+|++|++|...+. .+..|+||++.+. ...+.+|++ .++ .||+|||+|.|. ++...+.+..|.|+||+.+
T Consensus 16 ~~L~V~Vi~a~nL~~~~~-~~~~d~yVk~~llp~~~~~~kTkv-~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~ 92 (124)
T cd08389 16 RKLTVTVIRAQDIPTKDR-GGASSWQVHLVLLPSKKQRAKTKV-QRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVE 92 (124)
T ss_pred CEEEEEEEEecCCCchhc-CCCCCcEEEEEEccCCcceeeccc-ccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECC
Confidence 479999999999998774 3788999998773 345678888 555 999999999998 7665667789999999998
Q ss_pred CCCCCCceeEEEEEecceeccccCCCceeeEEEEe
Q 023810 82 NEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKL 116 (277)
Q Consensus 82 ~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L 116 (277)
. .+++++||++.|+|+++... .....||.|
T Consensus 93 ~-~~~~~~lG~~~i~L~~l~~~----~~~~~w~~L 122 (124)
T cd08389 93 R-MRKERLIGEKVVPLSQLNLE----GETTVWLTL 122 (124)
T ss_pred C-cccCceEEEEEEeccccCCC----CCceEEEeC
Confidence 6 47899999999999998543 235677776
No 56
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.71 E-value=1e-16 Score=126.10 Aligned_cols=106 Identities=23% Similarity=0.317 Sum_probs=85.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC----CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN----KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA 80 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~----~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~ 80 (277)
..|+|+|++|++|...+...+.+||||++.+.+. .+.+|++ ++++.||+|||+|.|.+....+....|.|+|||.
T Consensus 14 ~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v-~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~ 92 (123)
T cd08521 14 GSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSV-KKNTTNPVFNETLKYHISKSQLETRTLQLSVWHH 92 (123)
T ss_pred CEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccc-cCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeC
Confidence 5799999999999887622378999999998322 4578998 7889999999999999876555567899999999
Q ss_pred cCCCCCCceeEEEEEecceeccccCCCceeeEEEEe
Q 023810 81 GNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKL 116 (277)
Q Consensus 81 ~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L 116 (277)
+. .+++++||++.|+|.++.... ....||.|
T Consensus 93 ~~-~~~~~~iG~~~i~l~~l~~~~----~~~~w~~l 123 (123)
T cd08521 93 DR-FGRNTFLGEVEIPLDSWDLDS----QQSEWYPL 123 (123)
T ss_pred CC-CcCCceeeEEEEecccccccC----CCccEEEC
Confidence 86 468899999999999986432 24567765
No 57
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.71 E-value=9.5e-17 Score=126.53 Aligned_cols=98 Identities=21% Similarity=0.245 Sum_probs=79.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCC
Q 023810 6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEED 85 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~ 85 (277)
.|.|+|++|++|...+ ..||||++++. +.+.+|++ .++ .||.|||+|.|.+.. . +..|.|+|||++. .
T Consensus 3 ~L~V~Vv~Ar~L~~~~----~~dPYV~Ik~g-~~k~kT~v-~~~-~nP~WnE~F~F~~~~--~-~~~L~v~V~dkd~--~ 70 (127)
T cd08394 3 LLCVLVKKAKLDGAPD----KFNTYVTLKVQ-NVKSTTIA-VRG-SQPCWEQDFMFEINR--L-DLGLVIELWNKGL--I 70 (127)
T ss_pred eEEEEEEEeeCCCCCC----CCCCeEEEEEC-CEEeEeeE-CCC-CCCceeeEEEEEEcC--C-CCEEEEEEEeCCC--c
Confidence 6999999999997644 44899999994 77889998 554 599999999999965 2 3459999999884 4
Q ss_pred CCceeEEEEEecceeccccCCCceeeEEEEee
Q 023810 86 TKKLIGSAKLKLKDVINDVGLGERASLTLKLK 117 (277)
Q Consensus 86 ~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~ 117 (277)
.|+|||++.|+|.++...... -...||+|.
T Consensus 71 ~DD~lG~v~i~L~~v~~~~~~--~~~~Wy~L~ 100 (127)
T cd08394 71 WDTLVGTVWIPLSTIRQSNEE--GPGEWLTLD 100 (127)
T ss_pred CCCceEEEEEEhHHcccCCCC--CCCccEecC
Confidence 899999999999999876322 125677775
No 58
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.70 E-value=1.5e-16 Score=123.33 Aligned_cols=97 Identities=23% Similarity=0.333 Sum_probs=79.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC--CCeEEeeecCCCCCCCccceeEEEecCCCCC-CCceEEEEEEEcc
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP--NKKCSTKVDDEGDTCPYWDETLAIPLPGPVD-DDTTLIIDVVHAG 81 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~--~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l-~~~~L~v~V~d~~ 81 (277)
.+|+|+|++|++|...+...+.+||||++++.. +.+.+|++ ++++.||+|||+|.|.+...++ ....|.|+|||.+
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v-~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d 79 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRI-IRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSD 79 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeee-ECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCC
Confidence 379999999999988774326899999999843 35679999 7889999999999998865322 2468999999999
Q ss_pred CCCCCCceeEEEEEecceeccc
Q 023810 82 NEEDTKKLIGSAKLKLKDVIND 103 (277)
Q Consensus 82 ~~~~~d~~iG~~~v~L~~l~~~ 103 (277)
. .+.++|||++.|+|.+|...
T Consensus 80 ~-~~~dd~lG~~~i~l~~l~~~ 100 (111)
T cd04041 80 R-FTADDRLGRVEIDLKELIED 100 (111)
T ss_pred C-CCCCCcceEEEEEHHHHhcC
Confidence 6 46789999999999999854
No 59
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.70 E-value=2.9e-16 Score=122.33 Aligned_cols=114 Identities=23% Similarity=0.313 Sum_probs=85.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCCC
Q 023810 7 VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEEDT 86 (277)
Q Consensus 7 L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~~ 86 (277)
|+|+|++|++|+.. +.+||||+++++...+.+|++ +++ .||.|||+|.|.+....+....|.|.||+.+.. ..
T Consensus 2 L~v~vi~a~~l~~~----~~~dpyv~v~~~~~~~~kT~~-~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~-~~ 74 (117)
T cd08383 2 LRLRILEAKNLPSK----GTRDPYCTVSLDQVEVARTKT-VEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSK-DR 74 (117)
T ss_pred eEEEEEEecCCCcC----CCCCceEEEEECCEEeEecce-EEC-CCCcccceEEEecCCccccEEEEEEEEEecccC-CC
Confidence 78999999999864 578999999996545578998 566 999999999999977544456788999988753 44
Q ss_pred CceeEEEEEecceeccccCCCceeeEEEEeecC--CCCCceEEEEEEEE
Q 023810 87 KKLIGSAKLKLKDVINDVGLGERASLTLKLKRP--SGRPHGKVDVKVAV 133 (277)
Q Consensus 87 d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~--sg~~~G~L~l~v~~ 133 (277)
+.++|.+. |..+.. +.....||+|... ..+..|+|+|+++|
T Consensus 75 ~~~~g~v~--l~~~~~----~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 75 DIVIGKVA--LSKLDL----GQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred eeEEEEEE--ecCcCC----CCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 55666654 444433 2234678888543 34568999999986
No 60
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.70 E-value=2.2e-16 Score=124.32 Aligned_cols=103 Identities=22% Similarity=0.345 Sum_probs=86.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCC
Q 023810 6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEED 85 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~ 85 (277)
.|+|+|++|++|+..+.. +.+||||+++++...+.+|++ ++++.||.|||+|.|.+.. ....|.|+|||.+. ..
T Consensus 2 ~L~V~Vi~a~~L~~~d~~-g~~DPYv~v~~~~~~~~kT~~-~~~t~~P~Wne~f~~~v~~---~~~~L~v~v~d~~~-~~ 75 (120)
T cd04045 2 VLRLHIRKANDLKNLEGV-GKIDPYVRVLVNGIVKGRTVT-ISNTLNPVWDEVLYVPVTS---PNQKITLEVMDYEK-VG 75 (120)
T ss_pred eEEEEEEeeECCCCccCC-CCcCCEEEEEECCEEeeceeE-ECCCcCCccCceEEEEecC---CCCEEEEEEEECCC-CC
Confidence 689999999999988765 899999999996456678888 7789999999999999865 24689999999986 46
Q ss_pred CCceeEEEEEecceeccccCCCceeeEEEEeecC
Q 023810 86 TKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP 119 (277)
Q Consensus 86 ~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~ 119 (277)
.+++||+++++|.++.... ...||.|.+.
T Consensus 76 ~d~~IG~~~~~l~~l~~~~-----~~~~~~~~~~ 104 (120)
T cd04045 76 KDRSLGSVEINVSDLIKKN-----EDGKYVEYDD 104 (120)
T ss_pred CCCeeeEEEEeHHHhhCCC-----CCceEEecCC
Confidence 8899999999999998762 2456777554
No 61
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.69 E-value=2.3e-16 Score=124.49 Aligned_cols=104 Identities=21% Similarity=0.301 Sum_probs=83.1
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEecCC-CCCCCceEEEEEEE
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPLPG-PVDDDTTLIIDVVH 79 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v~~-~~l~~~~L~v~V~d 79 (277)
..|+|+|++|++|...+.. +..||||++.+.+ ..+.+|++ ++++.||+|||+|.|.+.. ..+....|.|+|||
T Consensus 16 ~~L~V~vi~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d 93 (125)
T cd04031 16 SQLIVTVLQARDLPPRDDG-SLRNPYVKVYLLPDRSEKSKRRTKT-VKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWD 93 (125)
T ss_pred CEEEEEEEEecCCCCcCCC-CCCCCEEEEEEccCCCccccccccc-cCCCCCCccccEEEEcccCHHHhCCCEEEEEEEe
Confidence 4799999999999987754 7899999999943 25678998 7889999999999998533 33456789999999
Q ss_pred ccCCCCCCceeEEEEEecceeccccCCCceeeEEEEe
Q 023810 80 AGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKL 116 (277)
Q Consensus 80 ~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L 116 (277)
.+. ...+++||++.++|++.... + ...||.|
T Consensus 94 ~~~-~~~~~~iG~~~i~l~~~~~~---~--~~~W~~L 124 (125)
T cd04031 94 YDR-DGENDFLGEVVIDLADALLD---D--EPHWYPL 124 (125)
T ss_pred CCC-CCCCcEeeEEEEeccccccc---C--CcceEEC
Confidence 986 46789999999999983322 1 2467776
No 62
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.69 E-value=3.2e-16 Score=123.78 Aligned_cols=105 Identities=21% Similarity=0.304 Sum_probs=85.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE--CCCCeEEeeecCCCCCCCccceeEEEecCC-CCCCCceEEEEEEEcc
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWV--DPNKKCSTKVDDEGDTCPYWDETLAIPLPG-PVDDDTTLIIDVVHAG 81 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l--d~~~~~~T~v~~~~~~nP~WnE~f~f~v~~-~~l~~~~L~v~V~d~~ 81 (277)
..|+|+|++|++|...+.. +..||||++.+ +...+.+|++ ++++.||+|||+|.|.+.. ..+....|.|+|||.+
T Consensus 16 ~~L~v~v~~a~~L~~~d~~-~~~dpyv~v~~~~~~~~~~kT~v-~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d 93 (125)
T cd08386 16 STLTLKILKAVELPAKDFS-GTSDPFVKIYLLPDKKHKLETKV-KRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYD 93 (125)
T ss_pred CEEEEEEEEecCCCCccCC-CCCCceEEEEECCCCCcceeeee-ecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCC
Confidence 5899999999999887754 78999999999 3356689999 7889999999999998532 2345568999999998
Q ss_pred CCCCCCceeEEEEEecceeccccCCCceeeEEEEe
Q 023810 82 NEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKL 116 (277)
Q Consensus 82 ~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L 116 (277)
. ..+++|||++.|+|+++.... ....|+.|
T Consensus 94 ~-~~~~~~iG~~~i~l~~l~~~~----~~~~W~~l 123 (125)
T cd08386 94 R-FSRNDPIGEVSLPLNKVDLTE----EQTFWKDL 123 (125)
T ss_pred C-CcCCcEeeEEEEecccccCCC----CcceEEec
Confidence 6 468899999999999987542 24567766
No 63
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.69 E-value=2.6e-16 Score=122.13 Aligned_cols=102 Identities=17% Similarity=0.359 Sum_probs=82.6
Q ss_pred CCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCCCCceeEEEEEecceecc
Q 023810 23 RHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVIN 102 (277)
Q Consensus 23 ~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~~d~~iG~~~v~L~~l~~ 102 (277)
.+|.+||||+++++.....+|++ +.++.||+|||+|.|.+.+. ..+.|.|+|||.+. . .+++||.+.|+|+++..
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v-~~~t~nP~Wne~f~f~v~~~--~~~~l~i~v~d~~~-~-~d~~iG~~~v~L~~l~~ 83 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRV-KKKTNNPSWNASTEFLVTDR--RKSRVTVVVKDDRD-R-HDPVLGSVSISLNDLID 83 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEee-eccCCCCccCCceEEEecCc--CCCEEEEEEEECCC-C-CCCeEEEEEecHHHHHh
Confidence 45889999999996445678998 67799999999999999752 35679999999986 4 78999999999999876
Q ss_pred ccCCCceeeEEEEeecCCCCCceEEEEEEEEEe
Q 023810 103 DVGLGERASLTLKLKRPSGRPHGKVDVKVAVRE 135 (277)
Q Consensus 103 ~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~~ 135 (277)
.. .....||.|.. +.+|+|+|+++|.+
T Consensus 84 ~~---~~~~~w~~L~~---~~~G~i~~~~~~~p 110 (111)
T cd04052 84 AT---SVGQQWFPLSG---NGQGRIRISALWKP 110 (111)
T ss_pred hh---hccceeEECCC---CCCCEEEEEEEEec
Confidence 42 22457888843 56899999999875
No 64
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.68 E-value=5.3e-16 Score=122.09 Aligned_cols=106 Identities=18% Similarity=0.184 Sum_probs=85.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEEC--CCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccC
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVD--PNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGN 82 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld--~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~ 82 (277)
..|.|+|++|++|...+...+..||||++.+. ...+.+|++ ++++.||+|||+|.|.+....+....|.|+|||.+.
T Consensus 14 ~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v-~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~ 92 (123)
T cd08390 14 EQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKV-KRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDR 92 (123)
T ss_pred CEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeee-EcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCc
Confidence 47999999999999876223789999999983 345578988 788999999999999987644445689999999886
Q ss_pred CCCCCceeEEEEEecceeccccCCCceeeEEEEe
Q 023810 83 EEDTKKLIGSAKLKLKDVINDVGLGERASLTLKL 116 (277)
Q Consensus 83 ~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L 116 (277)
..++++||++.|+|.++.... ....|++|
T Consensus 93 -~~~~~~iG~~~i~L~~l~~~~----~~~~w~~L 121 (123)
T cd08390 93 -FSRHCIIGHVLFPLKDLDLVK----GGVVWRDL 121 (123)
T ss_pred -CCCCcEEEEEEEeccceecCC----CceEEEeC
Confidence 467899999999999987653 23567776
No 65
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.68 E-value=1.7e-15 Score=119.84 Aligned_cols=117 Identities=20% Similarity=0.290 Sum_probs=91.6
Q ss_pred eEEEEEEEEeeCCCCCCC-CCCCCCcEEEEEEC-----CCCeEEeeecCCCC-CCCccceeEEEecCCCCCCCceEEEEE
Q 023810 5 YEVEVTITSAKDLKNVNW-RHGPNRPYAVLWVD-----PNKKCSTKVDDEGD-TCPYWDETLAIPLPGPVDDDTTLIIDV 77 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~-~~g~~dpYv~v~ld-----~~~~~~T~v~~~~~-~nP~WnE~f~f~v~~~~l~~~~L~v~V 77 (277)
..|+|+|++|++|...+. ..+..||||++++. ...+.+|++ +.++ .||.|||+|.|.+... +...|.|+|
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~-~~~~~~~P~w~e~f~f~~~~~--~~~~l~~~V 78 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKV-VKNNGFNPVWNETFEFDVTVP--ELAFLRFVV 78 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeee-ecCCCcCCccCCcEEEEEeCC--CeEEEEEEE
Confidence 379999999999987662 23789999999993 235678988 4444 4999999999998642 235799999
Q ss_pred EEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCC--CceEEEEEEEE
Q 023810 78 VHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGR--PHGKVDVKVAV 133 (277)
Q Consensus 78 ~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~--~~G~L~l~v~~ 133 (277)
||++.. ++++||++.++|++|... ..+++|+++.++ ..|+|.+++++
T Consensus 79 ~d~~~~--~~~~iG~~~~~l~~l~~g-------~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 79 YDEDSG--DDDFLGQACLPLDSLRQG-------YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred EeCCCC--CCcEeEEEEEEhHHhcCc-------eEEEEecCCCCCCCcceeEEEEEEE
Confidence 999863 889999999999998532 246788776663 57899998886
No 66
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.68 E-value=1.7e-15 Score=122.85 Aligned_cols=118 Identities=17% Similarity=0.291 Sum_probs=92.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE 84 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~ 84 (277)
..|.|.|++|++|... .++||.+.|+.....||++ +.++.||.|+|+|.|.+.. ....|+|.||+.+...
T Consensus 11 ~sL~v~V~EAk~Lp~~------~~~Y~~i~Ld~~~vaRT~v-~~~~~nP~W~E~F~f~~~~---~~~~l~v~v~k~~~~~ 80 (146)
T cd04013 11 NSLKLWIIEAKGLPPK------KRYYCELCLDKTLYARTTS-KLKTDTLFWGEHFEFSNLP---PVSVITVNLYRESDKK 80 (146)
T ss_pred EEEEEEEEEccCCCCc------CCceEEEEECCEEEEEEEE-EcCCCCCcceeeEEecCCC---cccEEEEEEEEccCcc
Confidence 4689999999999753 2799999998666679999 7789999999999998654 2357999998754321
Q ss_pred ---CCCceeEEEEEecceeccccCCCceeeEEEEeecCCCC----------CceEEEEEEEEEec
Q 023810 85 ---DTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGR----------PHGKVDVKVAVRES 136 (277)
Q Consensus 85 ---~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~----------~~G~L~l~v~~~~~ 136 (277)
..+++||.+.|++.+|... .....||+|...+++ ..++|+|+++|.+.
T Consensus 81 ~~~~~~~~IG~V~Ip~~~l~~~----~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 81 KKKDKSQLIGTVNIPVTDVSSR----QFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred ccccCCcEEEEEEEEHHHhcCC----CcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 2568999999999998853 346789999765443 24799999999765
No 67
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.66 E-value=8.5e-16 Score=122.98 Aligned_cols=97 Identities=21% Similarity=0.298 Sum_probs=80.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC------CCeEEeeecCCCCCCCccceeEEEecCCC--CCCCceEEEE
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP------NKKCSTKVDDEGDTCPYWDETLAIPLPGP--VDDDTTLIID 76 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~------~~~~~T~v~~~~~~nP~WnE~f~f~v~~~--~l~~~~L~v~ 76 (277)
..|+|+|++|++|...+.. +.+||||++.+.+ ..+.+|++ +.++.||+|||+|.|.+... ......|.|+
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~-g~~dPyv~v~l~~~~~~~~~~~~kT~v-~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~ 93 (133)
T cd04009 16 QSLRVEILNARNLLPLDSN-GSSDPFVKVELLPRHLFPDVPTPKTQV-KKKTLFPLFDESFEFNVPPEQCSVEGALLLFT 93 (133)
T ss_pred CEEEEEEEEeeCCCCcCCC-CCCCCEEEEEEECCCcCcccccccccc-CcCCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence 4799999999999987754 8899999999842 34679999 78899999999999998652 2235689999
Q ss_pred EEEccCCCCCCceeEEEEEecceecccc
Q 023810 77 VVHAGNEEDTKKLIGSAKLKLKDVINDV 104 (277)
Q Consensus 77 V~d~~~~~~~d~~iG~~~v~L~~l~~~~ 104 (277)
|||.+. .++++|||++.|+|++|..-.
T Consensus 94 V~d~d~-~~~d~~iG~~~i~l~~l~~~~ 120 (133)
T cd04009 94 VKDYDL-LGSNDFEGEAFLPLNDIPGVE 120 (133)
T ss_pred EEecCC-CCCCcEeEEEEEeHHHCCccc
Confidence 999986 467899999999999987543
No 68
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.66 E-value=5.5e-16 Score=124.66 Aligned_cols=92 Identities=20% Similarity=0.312 Sum_probs=77.8
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC--C--CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP--N--KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA 80 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~--~--~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~ 80 (277)
..|.|+|++|++|...+.. +.+||||++.+.+ . .+.+|++ ++++.||+|||+|.|.|....+.+..|.|+||+.
T Consensus 15 ~~L~V~Vi~A~nL~~~~~~-g~~DpyVkv~l~~~~~~~~k~kT~v-~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~ 92 (136)
T cd08406 15 ERLTVVVVKARNLVWDNGK-TTADPFVKVYLLQDGRKISKKKTSV-KRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAES 92 (136)
T ss_pred CEEEEEEEEeeCCCCccCC-CCCCeEEEEEEEeCCccccccCCcc-ccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeC
Confidence 4799999999999987643 8899999999932 2 2568888 7789999999999999987667788999999999
Q ss_pred cCCCCCCceeEEEEEecce
Q 023810 81 GNEEDTKKLIGSAKLKLKD 99 (277)
Q Consensus 81 ~~~~~~d~~iG~~~v~L~~ 99 (277)
+. .+++++||++.|....
T Consensus 93 d~-~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 93 TE-DGKTPNVGHVIIGPAA 110 (136)
T ss_pred CC-CCCCCeeEEEEECCCC
Confidence 86 4789999999997653
No 69
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.65 E-value=6.6e-16 Score=124.38 Aligned_cols=93 Identities=18% Similarity=0.252 Sum_probs=78.1
Q ss_pred eEEEEEEEEeeCCCCCCCC-CCCCCcEEEEEECC--C--CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEE
Q 023810 5 YEVEVTITSAKDLKNVNWR-HGPNRPYAVLWVDP--N--KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVH 79 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~-~g~~dpYv~v~ld~--~--~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d 79 (277)
..|.|+|++|++|...+.. .+.+||||++++.. + .+.+|++ ++++.||+|||+|.|.|+...+++..|.|+|||
T Consensus 15 ~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v-~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d 93 (138)
T cd08407 15 NRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKR-AKHKINPVWNEMIMFELPSELLAASSVELEVLN 93 (138)
T ss_pred CeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccce-eeCCCCCccccEEEEECCHHHhCccEEEEEEEe
Confidence 5799999999999887622 14489999999832 1 3568998 788999999999999998777778889999999
Q ss_pred ccCCCCCCceeEEEEEecce
Q 023810 80 AGNEEDTKKLIGSAKLKLKD 99 (277)
Q Consensus 80 ~~~~~~~d~~iG~~~v~L~~ 99 (277)
.+. .+++++||++.+.+..
T Consensus 94 ~d~-~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 94 QDS-PGQSLPLGRCSLGLHT 112 (138)
T ss_pred CCC-CcCcceeceEEecCcC
Confidence 986 5789999999999864
No 70
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.65 E-value=3.3e-15 Score=116.35 Aligned_cols=81 Identities=32% Similarity=0.480 Sum_probs=67.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC----CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEcc-
Q 023810 7 VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN----KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAG- 81 (277)
Q Consensus 7 L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~----~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~- 81 (277)
|+|+|++|++|+ +..||||++.+++. .+.+|++ +.++.||+|||+|.|.+.. ...|.|.|||++
T Consensus 1 L~V~V~~A~~L~------~~sDPYV~l~v~~~~~~~~~~KTk~-i~~TlnPvWnE~F~i~l~~----s~~L~~~v~d~~~ 69 (118)
T cd08686 1 LNVIVHSAQGFK------QSANLYCTLEVDSFGYFVKKAKTRV-CRDTTEPNWNEEFEIELEG----SQTLRILCYEKCY 69 (118)
T ss_pred CEEEEEeCCCCC------CCCCCEEEEEEcCccccceeeeeee-ecCCCCCccceEEEEEeCC----CCEEEEEEEEccc
Confidence 689999999995 45799999999642 4589999 7899999999999999964 468999999973
Q ss_pred -----CCCCCCceeEEEEEecc
Q 023810 82 -----NEEDTKKLIGSAKLKLK 98 (277)
Q Consensus 82 -----~~~~~d~~iG~~~v~L~ 98 (277)
.....+++||++.|.|.
T Consensus 70 ~~~~~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 70 SKVKLDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred ccccccccCcccEEEEEEEEEC
Confidence 12367899999888874
No 71
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.65 E-value=1.8e-15 Score=125.29 Aligned_cols=96 Identities=18% Similarity=0.211 Sum_probs=79.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEEC----CCCeEEeeecCCCCCCCccceeEEEecC-CCCCCCceEEEEEEE
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVD----PNKKCSTKVDDEGDTCPYWDETLAIPLP-GPVDDDTTLIIDVVH 79 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld----~~~~~~T~v~~~~~~nP~WnE~f~f~v~-~~~l~~~~L~v~V~d 79 (277)
..|.|+|++|++|...+.. +.+||||++.+. ...+++|++ +.++.||.|||+|.|.+. ...+.+..|.|+|||
T Consensus 27 g~L~V~Vi~A~nL~~~d~~-g~~DPYVkv~l~~~~~~~~~~kT~v-i~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 27 GELHVWVKEAKNLPALKSG-GTSDSFVKCYLLPDKSKKSKQKTPV-VKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred ceEEEEEEeeeCCCCCCCC-CCCCCEEEEEEEcCCCCCcceeCCc-cCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 5799999999999987754 899999999883 235679999 788999999999999853 323455689999999
Q ss_pred ccCCCCCCceeEEEEEecceeccc
Q 023810 80 AGNEEDTKKLIGSAKLKLKDVIND 103 (277)
Q Consensus 80 ~~~~~~~d~~iG~~~v~L~~l~~~ 103 (277)
++. .++++|||++.|.|.++...
T Consensus 105 ~d~-~~~d~~lG~v~i~l~~~~~~ 127 (162)
T cd04020 105 HDK-LSSNDFLGGVRLGLGTGKSY 127 (162)
T ss_pred CCC-CCCCceEEEEEEeCCccccC
Confidence 986 46799999999999988654
No 72
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.64 E-value=7.1e-15 Score=119.41 Aligned_cols=92 Identities=22% Similarity=0.430 Sum_probs=79.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE 84 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~ 84 (277)
..|+|+|++|++|...+. +.+||||++++. ..+.+|++ ++++.||+|||+|.|.+.. ....|.|+|||++. +
T Consensus 2 G~L~V~Vi~a~nL~~~d~--~~sDPYV~v~~g-~~~~kT~v-vk~t~nP~WnE~f~f~i~~---~~~~l~~~V~D~d~-~ 73 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF--TSSDPYVVLTLG-NQKVKTRV-IKKNLNPVWNEELTLSVPN---PMAPLKLEVFDKDT-F 73 (145)
T ss_pred eEEEEEEEeeECCCCCCC--CCcCcEEEEEEC-CEEEEeee-EcCCCCCeecccEEEEecC---CCCEEEEEEEECCC-C
Confidence 479999999999987774 689999999994 67889999 7789999999999999975 25689999999996 4
Q ss_pred CCCceeEEEEEecceecccc
Q 023810 85 DTKKLIGSAKLKLKDVINDV 104 (277)
Q Consensus 85 ~~d~~iG~~~v~L~~l~~~~ 104 (277)
+.+++||++.++|.++....
T Consensus 74 ~~dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 74 SKDDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCCCEEEEEEEEHHHhhhhh
Confidence 78899999999999887653
No 73
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.64 E-value=2.2e-15 Score=119.66 Aligned_cols=91 Identities=16% Similarity=0.222 Sum_probs=76.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE 84 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~ 84 (277)
..|+|+|++|++|.. +.. +..||||++++. ..+.+|++ ++++.||+|||+|.|.+... .....|.|+|||++. .
T Consensus 28 ~~L~V~V~~A~~L~~-d~~-g~~DPYVkV~~~-~~~~kT~v-i~~t~nPvWNE~F~f~~~~~-~~~~~L~v~V~D~d~-~ 101 (127)
T cd04032 28 ATLTVTVLRATGLWG-DYF-TSTDGYVKVFFG-GQEKRTEV-IWNNNNPRWNATFDFGSVEL-SPGGKLRFEVWDRDN-G 101 (127)
T ss_pred EEEEEEEEECCCCCc-CcC-CCCCeEEEEEEC-CccccCce-ecCCCCCcCCCEEEEecccC-CCCCEEEEEEEeCCC-C
Confidence 589999999999984 444 789999999995 55889999 78899999999999975321 135789999999996 4
Q ss_pred CCCceeEEEEEecceec
Q 023810 85 DTKKLIGSAKLKLKDVI 101 (277)
Q Consensus 85 ~~d~~iG~~~v~L~~l~ 101 (277)
+.++|||++.++|....
T Consensus 102 s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 102 WDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCCeeEEEEEEecCCc
Confidence 68999999999998654
No 74
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.64 E-value=1.6e-15 Score=123.99 Aligned_cols=107 Identities=19% Similarity=0.223 Sum_probs=83.9
Q ss_pred EEEEEEEEeeCCCCCCCC-------------CCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCce
Q 023810 6 EVEVTITSAKDLKNVNWR-------------HGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTT 72 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~-------------~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~ 72 (277)
+|+|+|++|++|...+.. .+.+||||++.+. ..+.+|++ ++++.||+|||+|.|.+..... +..
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~-g~~~kT~v-~~~t~nPvWNE~f~f~v~~p~~-~~~ 77 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA-GQKVKTSV-KKNSYNPEWNEQIVFPEMFPPL-CER 77 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEEC-CEeeecce-EcCCCCCCcceEEEEEeeCCCc-CCE
Confidence 379999999999987632 1368999999995 56679999 7889999999999999753222 468
Q ss_pred EEEEEEEccCCCCCCceeEEEEEecceeccccCCCce----eeEEEEee
Q 023810 73 LIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGER----ASLTLKLK 117 (277)
Q Consensus 73 L~v~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~----~~~~~~L~ 117 (277)
|.|+|||++. .+.+++||++.|+|.+|...... .| ...|+.|-
T Consensus 78 l~~~v~D~d~-~~~dd~iG~~~l~l~~l~~~~~~-~~lp~~~p~W~~ly 124 (151)
T cd04018 78 IKIQIRDWDR-VGNDDVIGTHFIDLSKISNSGDE-GFLPTFGPSFVNLY 124 (151)
T ss_pred EEEEEEECCC-CCCCCEEEEEEEeHHHhccCCcc-ccCCccCceEEEee
Confidence 9999999986 46899999999999998775421 11 25677774
No 75
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.64 E-value=2.5e-15 Score=121.02 Aligned_cols=105 Identities=18% Similarity=0.238 Sum_probs=85.0
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCcEEEEEECC---CCeEEeeecCCCCCCCccceeEEEecCCC-------------CCCC
Q 023810 7 VEVTITSAKDLKNVNWRHGPNRPYAVLWVDP---NKKCSTKVDDEGDTCPYWDETLAIPLPGP-------------VDDD 70 (277)
Q Consensus 7 L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~---~~~~~T~v~~~~~~nP~WnE~f~f~v~~~-------------~l~~ 70 (277)
|+|+|++|++|... .. +.+||||+++++. ..+.+|++ +.++.||.|||+|.|.+... .+..
T Consensus 1 L~V~Vi~A~~L~~~-~~-g~~dPyv~v~~~~~~~~~~~rT~v-v~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~ 77 (137)
T cd08675 1 LSVRVLECRDLALK-SN-GTCDPFARVTLNYSSKTDTKRTKV-KKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEK 77 (137)
T ss_pred CEEEEEEccCCCcc-cC-CCCCcEEEEEEecCCcCCeeccce-eeCCCCCCcceEEEEEccccccccccccccccccccc
Confidence 68999999999877 44 8999999999953 56789998 77899999999999998653 2245
Q ss_pred ceEEEEEEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecC
Q 023810 71 TTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP 119 (277)
Q Consensus 71 ~~L~v~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~ 119 (277)
..|.|+|||.+. ...++|||++.|+|.++.... ....||.|...
T Consensus 78 ~~l~i~V~d~~~-~~~~~~IG~~~i~l~~l~~~~----~~~~W~~L~~~ 121 (137)
T cd08675 78 SELRVELWHASM-VSGDDFLGEVRIPLQGLQQAG----SHQAWYFLQPR 121 (137)
T ss_pred cEEEEEEEcCCc-CcCCcEEEEEEEehhhccCCC----cccceEecCCc
Confidence 679999999986 368899999999999987432 24678888553
No 76
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.63 E-value=2.1e-15 Score=119.33 Aligned_cols=119 Identities=17% Similarity=0.210 Sum_probs=87.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC-CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810 6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN-KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE 84 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~-~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~ 84 (277)
+|+|+|++|++|...+.. +.+||||++++... .+.+|++ +.++.||.|||+|.|.+.. .+...|.|+|||.+. .
T Consensus 1 ~lrV~Vi~a~~L~~~d~~-g~~DPYv~v~~~~~~~~~kT~~-v~~t~nP~Wne~f~f~~~~--~~~~~L~~~V~d~d~-~ 75 (124)
T cd04037 1 LVRVYVVRARNLQPKDPN-GKSDPYLKIKLGKKKINDRDNY-IPNTLNPVFGKMFELEATL--PGNSILKISVMDYDL-L 75 (124)
T ss_pred CEEEEEEECcCCCCCCCC-CCCCcEEEEEECCeeccceeeE-EECCCCCccceEEEEEecC--CCCCEEEEEEEECCC-C
Confidence 489999999999988865 89999999999533 2356776 5679999999999999754 235689999999986 4
Q ss_pred CCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEEEe
Q 023810 85 DTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVRE 135 (277)
Q Consensus 85 ~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~~ 135 (277)
+.+++||++.|+|.+.... ..|... +..++....|.|....++..
T Consensus 76 ~~dd~iG~~~i~l~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~ 120 (124)
T cd04037 76 GSDDLIGETVIDLEDRFFS---KHRATC---GLPPTYEESGPNQWRDSLKP 120 (124)
T ss_pred CCCceeEEEEEeecccccc---hHHHhc---cCCCcccccCceecCcccCc
Confidence 6889999999999886532 111111 22233335666666666544
No 77
>PLN03008 Phospholipase D delta
Probab=99.63 E-value=4.1e-15 Score=146.90 Aligned_cols=102 Identities=22% Similarity=0.308 Sum_probs=84.5
Q ss_pred CCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCCCCceeEEEEEecceecccc
Q 023810 25 GPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDV 104 (277)
Q Consensus 25 g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~~d~~iG~~~v~L~~l~~~~ 104 (277)
+++||||++.++..++.||+| ++++.||+|||+|.|.|.. ....|.|+|||.+.+ .+++||++.|+|++|...
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrV-i~n~~NPvWNE~F~f~vah---~~s~L~f~VkD~D~~--gaD~IG~a~IPL~~L~~G- 147 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRV-LKNSQEPLWDEKFNISIAH---PFAYLEFQVKDDDVF--GAQIIGTAKIPVRDIASG- 147 (868)
T ss_pred CCCCceEEEEECCcceeeEEe-CCCCCCCCcceeEEEEecC---CCceEEEEEEcCCcc--CCceeEEEEEEHHHcCCC-
Confidence 467999999996555679999 7889999999999999976 245899999999974 468999999999998774
Q ss_pred CCCceeeEEEEeecCCCC---CceEEEEEEEEEec
Q 023810 105 GLGERASLTLKLKRPSGR---PHGKVDVKVAVRES 136 (277)
Q Consensus 105 ~~~~~~~~~~~L~~~sg~---~~G~L~l~v~~~~~ 136 (277)
+....|+.|....++ ..++|+|+++|.+.
T Consensus 148 ---e~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv 179 (868)
T PLN03008 148 ---ERISGWFPVLGASGKPPKAETAIFIDMKFTPF 179 (868)
T ss_pred ---CceEEEEEccccCCCCCCCCcEEEEEEEEEEc
Confidence 345788998776543 46899999999886
No 78
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.63 E-value=2.7e-15 Score=119.87 Aligned_cols=92 Identities=21% Similarity=0.294 Sum_probs=78.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA 80 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~ 80 (277)
..|.|+|++|++|...+.. +..||||++.+.+ ..+.+|++ +.++.||+|||+|.|.+....+....|.|+|||.
T Consensus 13 ~~L~V~Vi~a~~L~~~d~~-~~~DpyV~v~l~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~ 90 (133)
T cd08384 13 RGLIVGIIRCVNLAAMDAN-GYSDPFVKLYLKPDAGKKSKHKTQV-KKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDK 90 (133)
T ss_pred CEEEEEEEEEcCCCCcCCC-CCCCcEEEEEEEcCCCccCCceeee-EeccCCCCcccEEEEECCHHHhCCCEEEEEEEeC
Confidence 5899999999999988755 7899999999832 24578999 7889999999999999876445567899999998
Q ss_pred cCCCCCCceeEEEEEecce
Q 023810 81 GNEEDTKKLIGSAKLKLKD 99 (277)
Q Consensus 81 ~~~~~~d~~iG~~~v~L~~ 99 (277)
+. ..++++||++.|+|..
T Consensus 91 d~-~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 91 DI-GKSNDYIGGLQLGINA 108 (133)
T ss_pred CC-CCCccEEEEEEEecCC
Confidence 86 4678999999999974
No 79
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.63 E-value=3.7e-15 Score=121.96 Aligned_cols=99 Identities=25% Similarity=0.402 Sum_probs=80.1
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC----------------------------CeEEeeecCCCCCCCcc
Q 023810 4 RYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN----------------------------KKCSTKVDDEGDTCPYW 55 (277)
Q Consensus 4 ~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~----------------------------~~~~T~v~~~~~~nP~W 55 (277)
...|+|+|++|++|...+.. +.+||||++.+... ...+|++ +.++.||+|
T Consensus 27 ~~~L~V~vi~a~~L~~~d~~-g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v-~~~tlnP~W 104 (153)
T cd08676 27 IFVLKVTVIEAKGLLAKDVN-GFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEV-KPQTLNPVW 104 (153)
T ss_pred eEEEEEEEEeccCCcccCCC-CCCCceEEEEEcccccccccccccccccccccccccccccccccEecce-ecCCCCCcc
Confidence 36899999999999988854 89999999998421 2368888 788999999
Q ss_pred ceeEEEecCCCCCCCceEEEEEEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEe
Q 023810 56 DETLAIPLPGPVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKL 116 (277)
Q Consensus 56 nE~f~f~v~~~~l~~~~L~v~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L 116 (277)
||+|.|.+.. +....|.|+|||.+ ++|||++.|+|+++... + ...||.|
T Consensus 105 nE~F~f~v~~--~~~~~L~i~V~D~d-----d~~IG~v~i~l~~l~~~---~--~d~W~~L 153 (153)
T cd08676 105 NETFRFEVED--VSNDQLHLDIWDHD-----DDFLGCVNIPLKDLPSC---G--LDSWFKL 153 (153)
T ss_pred ccEEEEEecc--CCCCEEEEEEEecC-----CCeEEEEEEEHHHhCCC---C--CCCeEeC
Confidence 9999999965 34578999999986 68999999999998832 1 3556654
No 80
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.63 E-value=1.4e-15 Score=122.53 Aligned_cols=93 Identities=19% Similarity=0.307 Sum_probs=78.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC----CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN----KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA 80 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~----~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~ 80 (277)
..|+|+|++|++|...+ . +.+||||++.+.+. .+.+|++ ++++.||+|||+|.|.|+...+.+..|.|+||+.
T Consensus 15 ~~L~V~V~~a~nL~~~~-~-~~~d~yVkv~l~~~~~~~~~~kT~v-~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~ 91 (137)
T cd08409 15 NRLTVVVLRARGLRQLD-H-AHTSVYVKVSLMIHNKVVKTKKTEV-VDGAASPSFNESFSFKVTSRQLDTASLSLSVMQS 91 (137)
T ss_pred CeEEEEEEEecCCCccc-C-CCCCeEEEEEEEECCEEeeeeeccc-EeCCCCCcccceEEEECCHHHhCccEEEEEEEeC
Confidence 47999999999998777 4 78999999998432 3568888 7889999999999999987667778899999999
Q ss_pred cCCCCCCceeEEEEEecceec
Q 023810 81 GNEEDTKKLIGSAKLKLKDVI 101 (277)
Q Consensus 81 ~~~~~~d~~iG~~~v~L~~l~ 101 (277)
+. ..++++||++.|......
T Consensus 92 ~~-~~~~~~lG~v~ig~~~~~ 111 (137)
T cd08409 92 GG-VRKSKLLGRVVLGPFMYA 111 (137)
T ss_pred CC-CCCcceEEEEEECCcccC
Confidence 86 468899999999865443
No 81
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.62 E-value=2.1e-15 Score=121.65 Aligned_cols=92 Identities=21% Similarity=0.272 Sum_probs=78.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC--C---CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEE
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP--N---KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVH 79 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~--~---~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d 79 (277)
..|.|+|++|++|...+.. +..||||++.+.+ + .+.+|++ ++++.||+|||+|.|.+....+.+..|.|+||+
T Consensus 15 ~~L~V~VikarnL~~~~~~-~~~dpyVkv~llp~~~~~~~~~kT~v-~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~ 92 (138)
T cd08408 15 GRLSVEVIKGSNFKNLAMN-KAPDTYVKLTLLNSDGQEISKSKTSI-RRGQPDPEFKETFVFQVALFQLSEVTLMFSVYN 92 (138)
T ss_pred CeEEEEEEEecCCCccccC-CCCCeeEEEEEEeCCCcceeecccee-ecCCCCCcEeeeEEEECCHHHhCccEEEEEEEE
Confidence 5799999999999987754 7899999999832 2 2468998 678999999999999998766777899999999
Q ss_pred ccCCCCCCceeEEEEEecce
Q 023810 80 AGNEEDTKKLIGSAKLKLKD 99 (277)
Q Consensus 80 ~~~~~~~d~~iG~~~v~L~~ 99 (277)
.+. ..++++||++.|.+..
T Consensus 93 ~~~-~~~~~~iG~v~l~~~~ 111 (138)
T cd08408 93 KRK-MKRKEMIGWFSLGLNS 111 (138)
T ss_pred CCC-CCCCcEEEEEEECCcC
Confidence 986 5789999999998764
No 82
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.62 E-value=2.5e-15 Score=120.58 Aligned_cols=93 Identities=27% Similarity=0.417 Sum_probs=77.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA 80 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~ 80 (277)
.+|+|+|++|++|...+.. +.+||||++.+.. ..+.+|++ ++++.||.|||+|.|.+....+.+..|.|+|||.
T Consensus 15 ~~L~v~vi~a~~L~~~~~~-g~~dpyV~v~l~~~~~~~~~~kT~v-~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~ 92 (136)
T cd08405 15 NRITVNIIKARNLKAMDIN-GTSDPYVKVWLMYKDKRVEKKKTVI-KKRTLNPVFNESFIFNIPLERLRETTLIITVMDK 92 (136)
T ss_pred CeEEEEEEEeeCCCccccC-CCCCceEEEEEEeCCCccccccCcc-eeCCCCCcccceEEEeCCHHHhCCCEEEEEEEEC
Confidence 4799999999999887754 8899999999831 23568988 7889999999999999875444456899999999
Q ss_pred cCCCCCCceeEEEEEeccee
Q 023810 81 GNEEDTKKLIGSAKLKLKDV 100 (277)
Q Consensus 81 ~~~~~~d~~iG~~~v~L~~l 100 (277)
+. .++++|||++.|++.+.
T Consensus 93 ~~-~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 93 DR-LSRNDLIGKIYLGWKSG 111 (136)
T ss_pred CC-CCCCcEeEEEEECCccC
Confidence 86 46889999999999875
No 83
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.62 E-value=2.9e-15 Score=120.31 Aligned_cols=92 Identities=20% Similarity=0.295 Sum_probs=77.8
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC----CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN----KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA 80 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~----~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~ 80 (277)
..|.|+|++|++|...+.. +.+||||++.+... .+.+|++ ++++.||.|||+|.|.+....+....|.|+|||.
T Consensus 15 ~~L~V~vi~a~~L~~~d~~-g~~Dpyv~v~l~~~~~~~~~~kT~v-~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~ 92 (136)
T cd08404 15 NRLTVVVLKARHLPKMDVS-GLADPYVKVNLYYGKKRISKKKTHV-KKCTLNPVFNESFVFDIPSEELEDISVEFLVLDS 92 (136)
T ss_pred CeEEEEEEEeeCCCccccC-CCCCeEEEEEEEcCCceeeeEcCcc-ccCCCCCccCceEEEECCHHHhCCCEEEEEEEEC
Confidence 4799999999999988765 89999999998422 2467888 7889999999999999976445567799999999
Q ss_pred cCCCCCCceeEEEEEecce
Q 023810 81 GNEEDTKKLIGSAKLKLKD 99 (277)
Q Consensus 81 ~~~~~~d~~iG~~~v~L~~ 99 (277)
+. .+++++||++.|++..
T Consensus 93 d~-~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 93 DR-VTKNEVIGRLVLGPKA 110 (136)
T ss_pred CC-CCCCccEEEEEECCcC
Confidence 87 4788999999999987
No 84
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.61 E-value=3.5e-15 Score=119.78 Aligned_cols=92 Identities=24% Similarity=0.366 Sum_probs=77.1
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC--C--CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP--N--KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA 80 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~--~--~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~ 80 (277)
..|+|+|++|++|...+.. +.+||||++.+.. . .+.+|++ ++++.||.|||+|.|.+....+....|.|+|||.
T Consensus 15 ~~l~V~Vi~a~~L~~~d~~-g~~dpyv~v~l~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~ 92 (136)
T cd08402 15 GKLTVVILEAKNLKKMDVG-GLSDPYVKIHLMQNGKRLKKKKTTI-KKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDY 92 (136)
T ss_pred CeEEEEEEEeeCCCcccCC-CCCCCeEEEEEEECCcccceeeccc-eeCCCCCcccceEEEECCHHHhCCCEEEEEEEeC
Confidence 5799999999999987754 8899999999832 1 3567888 7889999999999999876445556899999999
Q ss_pred cCCCCCCceeEEEEEecce
Q 023810 81 GNEEDTKKLIGSAKLKLKD 99 (277)
Q Consensus 81 ~~~~~~d~~iG~~~v~L~~ 99 (277)
+. .++++|||++.|++..
T Consensus 93 ~~-~~~~~~iG~~~i~~~~ 110 (136)
T cd08402 93 DR-IGKNDPIGKVVLGCNA 110 (136)
T ss_pred CC-CCCCceeEEEEECCcc
Confidence 86 4688999999999865
No 85
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.61 E-value=1.4e-15 Score=121.24 Aligned_cols=106 Identities=21% Similarity=0.327 Sum_probs=83.8
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC----CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN----KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA 80 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~----~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~ 80 (277)
..|+|+|++|++|+..+.. +.+||||++.+... .+.+|++ +.++.||.|||+|.|.+....+....|.|+|||.
T Consensus 14 ~~L~V~v~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~~T~~-~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~ 91 (134)
T cd00276 14 ERLTVVVLKARNLPPSDGK-GLSDPYVKVSLLQGGKKLKKKKTSV-KKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDK 91 (134)
T ss_pred CEEEEEEEEeeCCCCccCC-CCCCcEEEEEEEcCCeEeeeecCcc-eecCCCCeeeeeEEEECCHHHhCCcEEEEEEEec
Confidence 4899999999999987744 78999999999432 2568888 7789999999999999976444467899999999
Q ss_pred cCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecC
Q 023810 81 GNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP 119 (277)
Q Consensus 81 ~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~ 119 (277)
+.. ..+++||.+.|+|.+ .. .....|+.|.+.
T Consensus 92 ~~~-~~~~~lG~~~i~l~~--~~----~~~~~W~~l~~~ 123 (134)
T cd00276 92 DSV-GRNEVIGQVVLGPDS--GG----EELEHWNEMLAS 123 (134)
T ss_pred CCC-CCCceeEEEEECCCC--CC----cHHHHHHHHHhC
Confidence 864 688999999999988 22 223455666543
No 86
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.61 E-value=5.3e-15 Score=118.72 Aligned_cols=90 Identities=18% Similarity=0.298 Sum_probs=75.1
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC-C---CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP-N---KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA 80 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~-~---~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~ 80 (277)
..|+|+|++|++|...+.. +.+||||++.+.. . .+.+|++ ++++.||+|||+|.|.+....+.+..|.|+|||.
T Consensus 14 ~~L~V~vi~a~~L~~~d~~-g~~DPyV~v~l~~~~~~~~~~kT~v-~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~ 91 (135)
T cd08410 14 GRLNVDIIRAKQLLQTDMS-QGSDPFVKIQLVHGLKLIKTKKTSC-MRGTIDPFYNESFSFKVPQEELENVSLVFTVYGH 91 (135)
T ss_pred CeEEEEEEEecCCCcccCC-CCCCeEEEEEEEcCCcccceEcCcc-ccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeC
Confidence 5799999999999988765 8999999999732 2 3468888 7889999999999999976555556799999999
Q ss_pred cCCCCCCceeEEEEEec
Q 023810 81 GNEEDTKKLIGSAKLKL 97 (277)
Q Consensus 81 ~~~~~~d~~iG~~~v~L 97 (277)
+. ..++++||++.|..
T Consensus 92 d~-~~~~~~iG~~~l~~ 107 (135)
T cd08410 92 NV-KSSNDFIGRIVIGQ 107 (135)
T ss_pred CC-CCCCcEEEEEEEcC
Confidence 86 47899999988754
No 87
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=7e-15 Score=138.69 Aligned_cols=125 Identities=21% Similarity=0.269 Sum_probs=102.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE--CCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccC
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWV--DPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGN 82 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l--d~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~ 82 (277)
..|.|+|++|++|...+ ..+.+||||++++ |...+.+|++ .++++||.|||+|.|.|....+....|.|.|||.++
T Consensus 167 ~~L~V~V~qa~~Lp~~d-~~g~sdpyVK~~llPdk~~k~kT~v-~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr 244 (421)
T KOG1028|consen 167 NLLTVRVIQAHDLPAKD-RGGTSDPYVKVYLLPDKKGKFKTRV-HRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR 244 (421)
T ss_pred CEEEEEEEEecCCCccc-CCCCCCCeeEEEEcCCCCCcceeee-eecCcCCccccceEeecCHHHhccCEEEEEEEecCC
Confidence 57999999999999888 4478999999999 4456789999 788999999999999987766778999999999997
Q ss_pred CCCCCceeEEEEEecceeccccCCCceeeEEEEeecC---CCCCceEEEEEEEEEec
Q 023810 83 EEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP---SGRPHGKVDVKVAVRES 136 (277)
Q Consensus 83 ~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~---sg~~~G~L~l~v~~~~~ 136 (277)
++++++||++.++|..+..... ...|..|... +....|+|.+++++...
T Consensus 245 -fsr~~~iGev~~~l~~~~~~~~----~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~ 296 (421)
T KOG1028|consen 245 -FSRHDFIGEVILPLGEVDLLST----TLFWKDLQPSSTDSEELAGELLLSLCYLPT 296 (421)
T ss_pred -cccccEEEEEEecCcccccccc----ceeeeccccccCCcccccceEEEEEEeecC
Confidence 5899999999999888765432 3456666442 22233899999998765
No 88
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.60 E-value=9.7e-15 Score=116.32 Aligned_cols=106 Identities=25% Similarity=0.327 Sum_probs=86.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA 80 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~ 80 (277)
..|+|+|++|++|...+.. +..||||++.+.. ..+.+|++ +.++.||.|||+|.|.+.... ....|.|+|||.
T Consensus 13 ~~l~v~i~~a~nL~~~~~~-~~~dpyv~v~~~~~~~~~~~~rT~v-~~~~~~P~wne~f~~~~~~~~-~~~~l~v~v~d~ 89 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPN-GLSDPYVKLKLIPDPKNETKQKTKT-IKKTLNPVWNETFTFDLKPAD-KDRRLSIEVWDW 89 (131)
T ss_pred CEEEEEEEEeeCCCCcCCC-CCCCCcEEEEEEcCCCCCceeccee-ecCCCCCCccceEEEeCCchh-cCCEEEEEEEEC
Confidence 4799999999999877654 7899999999942 35679998 788999999999999987532 246899999998
Q ss_pred cCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecC
Q 023810 81 GNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP 119 (277)
Q Consensus 81 ~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~ 119 (277)
+. ...+++||++.++|+++... ....||.|.+.
T Consensus 90 ~~-~~~~~~iG~~~~~l~~l~~~-----~~~~w~~L~~~ 122 (131)
T cd04026 90 DR-TTRNDFMGSLSFGVSELIKM-----PVDGWYKLLNQ 122 (131)
T ss_pred CC-CCCcceeEEEEEeHHHhCcC-----ccCceEECcCc
Confidence 86 46889999999999998754 24678888653
No 89
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.60 E-value=1.3e-14 Score=114.40 Aligned_cols=95 Identities=25% Similarity=0.314 Sum_probs=78.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEe-cCCCCCCCceEEEEEEE
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIP-LPGPVDDDTTLIIDVVH 79 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~-v~~~~l~~~~L~v~V~d 79 (277)
..|+|+|++|++|...+.. +..||||++.+.+ ..+.+|++ ++++.||.|||+|.|. +....+.+..|.|+|||
T Consensus 15 ~~L~V~v~~a~~L~~~~~~-~~~dpyv~v~~~~~~~~~~~~rT~v-~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d 92 (123)
T cd04035 15 SALHCTIIRAKGLKAMDAN-GLSDPYVKLNLLPGASKATKLRTKT-VHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLD 92 (123)
T ss_pred CEEEEEEEEeeCCCCCCCC-CCCCceEEEEEecCCCCCCceeeee-ecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEE
Confidence 4799999999999987764 7899999999832 24679998 7889999999999996 44323445689999999
Q ss_pred ccCCCCCCceeEEEEEecceeccc
Q 023810 80 AGNEEDTKKLIGSAKLKLKDVIND 103 (277)
Q Consensus 80 ~~~~~~~d~~iG~~~v~L~~l~~~ 103 (277)
.+.. .+++||++.|+|++|..+
T Consensus 93 ~~~~--~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 93 EDRF--GNDFLGETRIPLKKLKPN 114 (123)
T ss_pred cCCc--CCeeEEEEEEEcccCCCC
Confidence 9863 788999999999998865
No 90
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.59 E-value=7.8e-15 Score=117.42 Aligned_cols=91 Identities=27% Similarity=0.385 Sum_probs=76.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEEC--C--CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVD--P--NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA 80 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld--~--~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~ 80 (277)
..|+|+|++|++|...+.. +.+||||++.+. . ..+.+|++ ++++.||.|||+|.|.+....+.+..|.|+|||.
T Consensus 14 ~~L~V~v~~A~~L~~~d~~-g~~dpyvkv~l~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~ 91 (134)
T cd08403 14 GRLTLTIIKARNLKAMDIT-GFSDPYVKVSLMCEGRRLKKKKTSV-KKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDY 91 (134)
T ss_pred CEEEEEEEEeeCCCccccC-CCCCceEEEEEEeCCcccceecCCc-ccCCCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence 4799999999999988765 899999999983 2 23568888 7889999999999999876445556799999999
Q ss_pred cCCCCCCceeEEEEEecc
Q 023810 81 GNEEDTKKLIGSAKLKLK 98 (277)
Q Consensus 81 ~~~~~~d~~iG~~~v~L~ 98 (277)
+. .++++|||++.|++.
T Consensus 92 ~~-~~~~~~IG~~~l~~~ 108 (134)
T cd08403 92 DR-VGHNELIGVCRVGPN 108 (134)
T ss_pred CC-CCCCceeEEEEECCC
Confidence 86 478999999999876
No 91
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.56 E-value=2.9e-14 Score=113.87 Aligned_cols=93 Identities=13% Similarity=0.205 Sum_probs=74.1
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE--CCC--CeEEeeecCCCC-CCCccceeEEEecCCCCCCCceEEEEEE
Q 023810 4 RYEVEVTITSAKDLKNVNWRHGPNRPYAVLWV--DPN--KKCSTKVDDEGD-TCPYWDETLAIPLPGPVDDDTTLIIDVV 78 (277)
Q Consensus 4 ~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l--d~~--~~~~T~v~~~~~-~nP~WnE~f~f~v~~~~l~~~~L~v~V~ 78 (277)
...|.|+|++|++|+.... ....||||++++ +++ .+.+|++ ++++ .||+|||+|.|+|... ..+..|.|+||
T Consensus 13 ~~rLtV~VikarnL~~~~~-~~~~dpYVKV~L~~~~k~~~KkKT~v-~k~t~~~P~fNEsF~Fdv~~~-~~~v~l~v~v~ 89 (135)
T cd08692 13 NSRIQLQILEAQNLPSSST-PLTLSFFVKVGMFSTGGLLYKKKTRL-VKSSNGQVKWGETMIFPVTQQ-EHGIQFLIKLY 89 (135)
T ss_pred CCeEEEEEEEccCCCcccC-CCCCCcEEEEEEEECCCcceeecCcc-EECCCCCceecceEEEeCCch-hheeEEEEEEE
Confidence 3579999999999987542 356799999998 222 4678888 6666 4699999999999874 34567899999
Q ss_pred EccCCCCCCceeEEEEEeccee
Q 023810 79 HAGNEEDTKKLIGSAKLKLKDV 100 (277)
Q Consensus 79 d~~~~~~~d~~iG~~~v~L~~l 100 (277)
|.+. .+++++||++.+.++..
T Consensus 90 d~~~-~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 90 SRSS-VRRKHFLGQVWISSDSS 110 (135)
T ss_pred eCCC-CcCCceEEEEEECCccC
Confidence 9986 47899999999998763
No 92
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.56 E-value=3.4e-15 Score=136.65 Aligned_cols=97 Identities=27% Similarity=0.380 Sum_probs=84.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE--CC--CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWV--DP--NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA 80 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l--d~--~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~ 80 (277)
..|+|+|.+|++|...+- +|-+||||++.+ |+ ..+++|++ ++.++||+|||+|+|.+.+.+ .++.|.|+|||+
T Consensus 180 ~~l~v~i~ea~NLiPMDp-NGlSDPYvk~kliPD~~~~sKqKTkT-ik~~LNP~wNEtftf~Lkp~D-kdrRlsiEvWDW 256 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIPMDP-NGLSDPYVKLKLIPDPKNESKQKTKT-IKATLNPVWNETFTFKLKPSD-KDRRLSIEVWDW 256 (683)
T ss_pred ceEEEEehhhccccccCC-CCCCCcceeEEeccCCcchhhhhhhh-hhhhcCccccceeEEeccccc-ccceeEEEEecc
Confidence 478999999999999885 499999999999 33 35678998 889999999999999998754 467899999999
Q ss_pred cCCCCCCceeEEEEEecceeccccC
Q 023810 81 GNEEDTKKLIGSAKLKLKDVINDVG 105 (277)
Q Consensus 81 ~~~~~~d~~iG~~~v~L~~l~~~~~ 105 (277)
++ .++++|+|+..+.|++|.....
T Consensus 257 Dr-TsRNDFMGslSFgisEl~K~p~ 280 (683)
T KOG0696|consen 257 DR-TSRNDFMGSLSFGISELQKAPV 280 (683)
T ss_pred cc-cccccccceecccHHHHhhcch
Confidence 97 5899999999999999987653
No 93
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.56 E-value=4.7e-14 Score=110.79 Aligned_cols=98 Identities=18% Similarity=0.279 Sum_probs=78.0
Q ss_pred EEEeeCCCCCCCCCCCCCcEEEEEECCCC------eEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCC-
Q 023810 11 ITSAKDLKNVNWRHGPNRPYAVLWVDPNK------KCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNE- 83 (277)
Q Consensus 11 v~~A~~L~~~~~~~g~~dpYv~v~ld~~~------~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~- 83 (277)
.++|++|...+.. +.+||||++++.... +.+|++ ++++.||+|||+|.|.+... ....|.|+|||++..
T Consensus 6 ~i~a~~L~~~d~~-g~~DPyv~v~~~~~~~~~~~~~~kT~v-i~~t~nP~wne~f~f~~~~~--~~~~l~~~V~d~d~~~ 81 (120)
T cd04048 6 SISCRNLLDKDVL-SKSDPFVVVYVKTGGSGQWVEIGRTEV-IKNNLNPDFVTTFTVDYYFE--EVQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEccCCCCCCCC-CCCCcEEEEEEEcCCCCceEEeccEeE-eCCCCCCCceEEEEEEEEeE--eeeEEEEEEEEecCCc
Confidence 4889999988865 899999999995432 479999 78899999999999986432 245799999999851
Q ss_pred --CCCCceeEEEEEecceeccccCCCceeeEEEEe
Q 023810 84 --EDTKKLIGSAKLKLKDVINDVGLGERASLTLKL 116 (277)
Q Consensus 84 --~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L 116 (277)
.+.++|||++.++|.+|+... ....++.|
T Consensus 82 ~~~~~~d~iG~~~i~l~~l~~~~----~~~~~~~l 112 (120)
T cd04048 82 KDLSDHDFLGEAECTLGEIVSSP----GQKLTLPL 112 (120)
T ss_pred CCCCCCcEEEEEEEEHHHHhcCC----CcEEEEEc
Confidence 468899999999999998653 23456666
No 94
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.48 E-value=3.6e-13 Score=103.97 Aligned_cols=91 Identities=21% Similarity=0.331 Sum_probs=71.9
Q ss_pred EEEEEeeCCCCCCCCCCCCCcEEEEEECCC-----CeEEeeecCCCCCCCccceeEEEecCCC-CC-CCceEEEEEEEcc
Q 023810 9 VTITSAKDLKNVNWRHGPNRPYAVLWVDPN-----KKCSTKVDDEGDTCPYWDETLAIPLPGP-VD-DDTTLIIDVVHAG 81 (277)
Q Consensus 9 V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~-----~~~~T~v~~~~~~nP~WnE~f~f~v~~~-~l-~~~~L~v~V~d~~ 81 (277)
+-.++|++|...+.. +.+||||++++... .+.+|++ ++++.||+|| +|.|.+..- .. ....|.|+|||++
T Consensus 4 ~~~i~a~~L~~~d~~-~~~DPyv~v~~~~~~~~~~~~~kT~v-i~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d 80 (110)
T cd04047 4 ELQFSGKKLDKKDFF-GKSDPFLEISRQSEDGTWVLVYRTEV-IKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYD 80 (110)
T ss_pred EEEEEeCCCCCCCCC-CCCCeeEEEEEECCCCCEEEEEeeeE-eccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeC
Confidence 345799999988865 89999999998432 2479999 7889999999 788875421 01 1468999999998
Q ss_pred CCCCCCceeEEEEEecceeccc
Q 023810 82 NEEDTKKLIGSAKLKLKDVIND 103 (277)
Q Consensus 82 ~~~~~d~~iG~~~v~L~~l~~~ 103 (277)
. .+++++||++.++|++|...
T Consensus 81 ~-~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 81 S-SGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred C-CCCCcEEEEEEEEHHHHhcC
Confidence 6 46889999999999999844
No 95
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=9.1e-14 Score=132.14 Aligned_cols=120 Identities=15% Similarity=0.334 Sum_probs=97.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCC--
Q 023810 6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNE-- 83 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~-- 83 (277)
.+++||+.|.+|...+. +|++||||.+.+ ++.+.||++ +...+||+|||+|+|.+.++ ...|.|.|||++..
T Consensus 296 kitltvlcaqgl~akdk-tg~sdpyvt~qv-~ktkrrtrt-i~~~lnpvw~ekfhfechns---tdrikvrvwded~dlk 369 (1283)
T KOG1011|consen 296 KITLTVLCAQGLIAKDK-TGKSDPYVTAQV-GKTKRRTRT-IHQELNPVWNEKFHFECHNS---TDRIKVRVWDEDNDLK 369 (1283)
T ss_pred eeEEeeeecccceeccc-CCCCCCcEEEee-cccchhhHh-hhhccchhhhhheeeeecCC---CceeEEEEecCcccHH
Confidence 68899999999998885 499999999999 488889998 88899999999999999873 56799999997642
Q ss_pred --------CCCCceeEEEEEecceeccccCCCceeeEEEEeecC--CCCCceEEEEEEEEEecC
Q 023810 84 --------EDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP--SGRPHGKVDVKVAVRESR 137 (277)
Q Consensus 84 --------~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~--sg~~~G~L~l~v~~~~~~ 137 (277)
..+|+|||++.|.+..|.-. ..+||.|.+. .....|-|+|.|++.-++
T Consensus 370 sklrqkl~resddflgqtvievrtlsge------mdvwynlekrtdksavsgairlhisveikg 427 (1283)
T KOG1011|consen 370 SKLRQKLTRESDDFLGQTVIEVRTLSGE------MDVWYNLEKRTDKSAVSGAIRLHISVEIKG 427 (1283)
T ss_pred HHHHHHhhhcccccccceeEEEEecccc------hhhhcchhhccchhhccceEEEEEEEEEcC
Confidence 25789999999988776432 5789999543 344678888888876553
No 96
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.47 E-value=2.2e-13 Score=145.61 Aligned_cols=118 Identities=19% Similarity=0.283 Sum_probs=94.1
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE 84 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~ 84 (277)
..|.|+|+++++|. .+ + +++||||++.++...+.+|++ ++++.||+|||.|+|.++... ....|+|+|||++.+
T Consensus 1980 G~L~V~V~~a~nl~-~~-~-~~sdPyv~l~~g~~~~~kTkv-vk~~~nP~Wne~f~~~~~~p~-~~~~l~iev~d~d~f- 2053 (2102)
T PLN03200 1980 GSLTVTIKRGNNLK-QS-M-GNTNAFCKLTLGNGPPRQTKV-VSHSSSPEWKEGFTWAFDSPP-KGQKLHISCKSKNTF- 2053 (2102)
T ss_pred cceEEEEeeccccc-cc-c-CCCCCeEEEEECCCCcccccc-cCCCCCCCcccceeeeecCCC-CCCceEEEEEecCcc-
Confidence 67999999999998 33 3 899999999996455779999 899999999999998887632 346799999999964
Q ss_pred CCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceE---EEEEEEEE
Q 023810 85 DTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGK---VDVKVAVR 134 (277)
Q Consensus 85 ~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~---L~l~v~~~ 134 (277)
+ ++.||.+.|+|.++..+. ....||.|.. +++..|. |.|.++..
T Consensus 2054 ~-kd~~G~~~i~l~~vv~~~----~~~~~~~L~~-~~~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2054 G-KSSLGKVTIQIDRVVMEG----TYSGEYSLNP-ESNKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred C-CCCCceEEEEHHHHhcCc----eeeeeeecCc-ccccCCCcceEEEEEEec
Confidence 4 457999999999998753 3467888853 3444566 88887664
No 97
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.46 E-value=2.4e-13 Score=98.82 Aligned_cols=83 Identities=31% Similarity=0.505 Sum_probs=68.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCC--eEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810 7 VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNK--KCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE 84 (277)
Q Consensus 7 L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~--~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~ 84 (277)
|+|+|++|++|...+.. +..++|+++.+.... +.+|++ ..++.+|.|||+|.|.+.... ...|.|+||+.+. .
T Consensus 1 L~v~I~~a~~L~~~~~~-~~~~~yv~v~~~~~~~~~~~T~~-~~~~~~P~w~e~~~~~~~~~~--~~~l~~~V~~~~~-~ 75 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSN-GKPDPYVRVSVNGSESTKYKTKV-KKNTSNPVWNEEFEFPLDDPD--LDSLSFEVWDKDS-F 75 (85)
T ss_dssp EEEEEEEEESSSSSSTT-SSBEEEEEEEEETTTCEEEEECC-BSSBSSEEEEEEEEEEESHGC--GTEEEEEEEEETS-S
T ss_pred CEEEEEEEECCCCcccC-Ccccccceeecceeeeeeeeeee-eeccccceeeeeeeeeeeccc--ccceEEEEEECCC-C
Confidence 78999999999986643 789999999995443 489998 778899999999999976633 3459999999986 4
Q ss_pred CCCceeEEEE
Q 023810 85 DTKKLIGSAK 94 (277)
Q Consensus 85 ~~d~~iG~~~ 94 (277)
..+++||++.
T Consensus 76 ~~~~~iG~~~ 85 (85)
T PF00168_consen 76 GKDELIGEVK 85 (85)
T ss_dssp SSEEEEEEEE
T ss_pred CCCCEEEEEC
Confidence 5689999874
No 98
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.35 E-value=4e-12 Score=101.43 Aligned_cols=96 Identities=19% Similarity=0.220 Sum_probs=77.0
Q ss_pred EEEEEEEEeeCCCCCCC-CCC--CCCcEEEEEECC--CCeEEeeecCCCCCC--CccceeEEEecCC-------------
Q 023810 6 EVEVTITSAKDLKNVNW-RHG--PNRPYAVLWVDP--NKKCSTKVDDEGDTC--PYWDETLAIPLPG------------- 65 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~-~~g--~~dpYv~v~ld~--~~~~~T~v~~~~~~n--P~WnE~f~f~v~~------------- 65 (277)
.|+|.|.+|+++...+. .++ .+|+||++++++ ..+++|.| ..+++| |.||+.|.|++..
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDV-HyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~ 79 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDV-HYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKE 79 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccce-EEecCCCCcEEeEEEEEeeecCCccceeEEEeec
Confidence 48999999999654321 125 499999999965 46789999 677889 9999999988765
Q ss_pred --------CCCCCceEEEEEEEccCCCCCCceeEEEEEecceeccc
Q 023810 66 --------PVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVIND 103 (277)
Q Consensus 66 --------~~l~~~~L~v~V~d~~~~~~~d~~iG~~~v~L~~l~~~ 103 (277)
+.+....|.|+|||.+. ++.+++||++.++|..+...
T Consensus 80 ~~~~~~~~e~~~~~~L~lqvwD~D~-~s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 80 HFWSLDETEYKIPPKLTLQVWDNDK-FSPDDFLGSLELDLSILPRP 124 (133)
T ss_pred cccccCcceEecCcEEEEEEEECcc-cCCCCcceEEEEEhhhcccc
Confidence 23445779999999997 57899999999999987655
No 99
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.35 E-value=1.5e-11 Score=91.34 Aligned_cols=93 Identities=28% Similarity=0.480 Sum_probs=76.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC--CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCC
Q 023810 6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN--KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNE 83 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~--~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~ 83 (277)
+|.|+|+++++|...... ...++||++.+... ...+|++ ..++.||.|||+|.|.+... ....|.|+||+....
T Consensus 1 ~l~i~i~~~~~l~~~~~~-~~~~~yv~v~~~~~~~~~~~T~~-~~~~~~P~w~e~~~~~~~~~--~~~~l~i~v~~~~~~ 76 (101)
T smart00239 1 TLTVKIISARNLPKKDKK-GKSDPYVKVSLDGDPKEKKKTKV-VKNTLNPVWNETFEFEVPPP--ELAELEIEVYDKDRF 76 (101)
T ss_pred CeEEEEEEeeCCCCCCCC-CCCCceEEEEEeCCccceEeeeE-ecCCCCCcccceEEEEecCc--ccCEEEEEEEecCCc
Confidence 378999999999876543 57899999999644 4788988 66777999999999999762 267899999998853
Q ss_pred CCCCceeEEEEEecceeccc
Q 023810 84 EDTKKLIGSAKLKLKDVIND 103 (277)
Q Consensus 84 ~~~d~~iG~~~v~L~~l~~~ 103 (277)
..+.+||.+.++|.++...
T Consensus 77 -~~~~~~G~~~~~l~~~~~~ 95 (101)
T smart00239 77 -GRDDFIGQVTIPLSDLLLG 95 (101)
T ss_pred -cCCceeEEEEEEHHHcccC
Confidence 4688999999999888665
No 100
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.32 E-value=2.8e-11 Score=89.28 Aligned_cols=90 Identities=24% Similarity=0.509 Sum_probs=75.0
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCCC
Q 023810 7 VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEEDT 86 (277)
Q Consensus 7 L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~~ 86 (277)
|.|.|++|++|...... ...++||++.++.....+|++ ..++.||.|||.|.|.+... ....|.|+||+.+.. ..
T Consensus 1 l~v~i~~~~~l~~~~~~-~~~~~~v~v~~~~~~~~~T~~-~~~~~~P~w~~~~~~~~~~~--~~~~l~i~v~~~~~~-~~ 75 (102)
T cd00030 1 LRVTVIEARNLPAKDLN-GKSDPYVKVSLGGKQKFKTKV-VKNTLNPVWNETFEFPVLDP--ESDTLTVEVWDKDRF-SK 75 (102)
T ss_pred CEEEEEeeeCCCCcCCC-CCCCcEEEEEeccCceEecce-eCCCCCCcccceEEEEccCC--CCCEEEEEEEecCCC-CC
Confidence 57999999999875533 689999999996447788888 66789999999999999752 356799999998863 56
Q ss_pred CceeEEEEEecceec
Q 023810 87 KKLIGSAKLKLKDVI 101 (277)
Q Consensus 87 d~~iG~~~v~L~~l~ 101 (277)
+++||.+.+++.++.
T Consensus 76 ~~~ig~~~~~l~~l~ 90 (102)
T cd00030 76 DDFLGEVEIPLSELL 90 (102)
T ss_pred CceeEEEEEeHHHhh
Confidence 789999999999987
No 101
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.31 E-value=5.6e-12 Score=95.45 Aligned_cols=87 Identities=24% Similarity=0.386 Sum_probs=72.8
Q ss_pred EEEEEEEeeCCCCCCC--CCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810 7 VEVTITSAKDLKNVNW--RHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE 84 (277)
Q Consensus 7 L~V~v~~A~~L~~~~~--~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~ 84 (277)
|+|+|.+|++|.+... +.++.++||+++++...+.||++ +.|+.|||+|.|+|.. ...|.|.|||+..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~----srnd~WnE~F~i~Vdk----~nEiel~VyDk~~-- 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP----SRNDRWNEDFEIPVEK----NNEEEVIVYDKGG-- 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC----CCCCcccceEEEEecC----CcEEEEEEEeCCC--
Confidence 6899999999988762 33788999999997677889998 4799999999999953 5689999999874
Q ss_pred CCCceeEEEEEecceeccc
Q 023810 85 DTKKLIGSAKLKLKDVIND 103 (277)
Q Consensus 85 ~~d~~iG~~~v~L~~l~~~ 103 (277)
...--||...|.|++|...
T Consensus 71 ~~~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 71 DQPVPVGLLWLRLSDIAEE 89 (109)
T ss_pred CeecceeeehhhHHHHHHH
Confidence 3445699999999998865
No 102
>PLN02270 phospholipase D alpha
Probab=99.30 E-value=3.6e-11 Score=119.11 Aligned_cols=122 Identities=20% Similarity=0.273 Sum_probs=97.8
Q ss_pred eEEEEEEEEeeCCCCC-----------------CCCCCCCCcEEEEEECCCCeEEeeecCCC-CCCCccceeEEEecCCC
Q 023810 5 YEVEVTITSAKDLKNV-----------------NWRHGPNRPYAVLWVDPNKKCSTKVDDEG-DTCPYWDETLAIPLPGP 66 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~-----------------~~~~g~~dpYv~v~ld~~~~~~T~v~~~~-~~nP~WnE~f~f~v~~~ 66 (277)
.+|+|+|.+|++|.+. ....+.+++||.+.++.....||++ +++ ..||+|||+|.+.|...
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~-~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRK-IENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEee-cCCCCCCCccccceEEeeccC
Confidence 5799999999999752 1112467999999998677789999 666 46999999999999762
Q ss_pred CCCCceEEEEEEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCC---ceEEEEEEEEEec
Q 023810 67 VDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRP---HGKVDVKVAVRES 136 (277)
Q Consensus 67 ~l~~~~L~v~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~---~G~L~l~v~~~~~ 136 (277)
-..|.|.|.|.+.+ ...+||.+.||+.+|++. +....||+|...++++ .-+|+|+++|.+.
T Consensus 87 ---~~~v~f~vkd~~~~--g~~~ig~~~~p~~~~~~g----~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 87 ---ASNIIFTVKDDNPI--GATLIGRAYIPVEEILDG----EEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred ---cceEEEEEecCCcc--CceEEEEEEEEHHHhcCC----CccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 46799999999864 456999999999999875 3467889988776654 2489999999885
No 103
>PLN02223 phosphoinositide phospholipase C
Probab=99.30 E-value=3.3e-11 Score=115.01 Aligned_cols=117 Identities=17% Similarity=0.235 Sum_probs=85.9
Q ss_pred eEEEEEEEEeeCCC-C---CCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEE
Q 023810 5 YEVEVTITSAKDLK-N---VNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIID 76 (277)
Q Consensus 5 ~~L~V~v~~A~~L~-~---~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~ 76 (277)
++|.|+|+++.++. + ........||||+|.+-+ ..+.+|+| .+++.||+|||+|.|.|... +-..|+|+
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v-~nNg~nPvWne~F~F~i~~P--ELAlLrf~ 485 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTV-KNNEWKPTWGEEFTFPLTYP--DLALISFE 485 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEe-CCCCcCceecceeEEEEEcc--CceEEEEE
Confidence 47999999999863 1 111124679999999922 34567777 78899999999999998753 34579999
Q ss_pred EEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCC--ceEEEEEEE
Q 023810 77 VVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRP--HGKVDVKVA 132 (277)
Q Consensus 77 V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~--~G~L~l~v~ 132 (277)
|+|.+. ...++|||++.+||+.|..+. ++++|++..++. .-+|.+++.
T Consensus 486 V~D~D~-~~~ddfiGQ~~LPv~~Lr~Gy-------R~VpL~~~~g~~l~~~~Ll~~f~ 535 (537)
T PLN02223 486 VYDYEV-STADAFCGQTCLPVSELIEGI-------RAVPLYDERGKACSSTMLLTRFK 535 (537)
T ss_pred EEecCC-CCCCcEEEEEecchHHhcCCc-------eeEeccCCCcCCCCCceEEEEEE
Confidence 999985 367899999999999987653 456787766654 234444443
No 104
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.30 E-value=9.7e-12 Score=119.57 Aligned_cols=125 Identities=23% Similarity=0.350 Sum_probs=105.9
Q ss_pred CCCceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810 1 MASRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA 80 (277)
Q Consensus 1 m~~~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~ 80 (277)
|+....|.|.|.+||+|...+.. +..|+||.|.+|.....||.+ +.+++.|.|.|+|.|.+.. ....|.|-|||+
T Consensus 1 ~~~~~sl~vki~E~knL~~~~~~-g~~D~yC~v~lD~E~v~RT~t-v~ksL~PF~gEe~~~~iP~---~F~~l~fYv~D~ 75 (800)
T KOG2059|consen 1 VRVEQSLKVKIGEAKNLPSYGPS-GMRDCYCTVNLDQEEVCRTAT-VEKSLCPFFGEEFYFEIPR---TFRYLSFYVWDR 75 (800)
T ss_pred CccccceeEEEeecccCCCCCCC-CCcCcceEEeecchhhhhhhh-hhhhcCCccccceEEecCc---ceeeEEEEEecc
Confidence 56677899999999999988765 899999999999788899999 8899999999999999986 246799999999
Q ss_pred cCCCCCCceeEEEEEecceeccccCCCceeeEEEEe--ecCCCCCceEEEEEEEEEec
Q 023810 81 GNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKL--KRPSGRPHGKVDVKVAVRES 136 (277)
Q Consensus 81 ~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L--~~~sg~~~G~L~l~v~~~~~ 136 (277)
+ .++|+.||++-|.=.+|..-... .-|+.| .++...++|+|+|++.+.+.
T Consensus 76 d--~~~D~~IGKvai~re~l~~~~~~----d~W~~L~~VD~dsEVQG~v~l~l~~~e~ 127 (800)
T KOG2059|consen 76 D--LKRDDIIGKVAIKREDLHMYPGK----DTWFSLQPVDPDSEVQGKVHLELALTEA 127 (800)
T ss_pred c--cccccccceeeeeHHHHhhCCCC----ccceeccccCCChhhceeEEEEEEeccc
Confidence 9 47999999999987777655422 345555 45788899999999999886
No 105
>PLN02952 phosphoinositide phospholipase C
Probab=99.23 E-value=1.5e-10 Score=112.54 Aligned_cols=118 Identities=19% Similarity=0.274 Sum_probs=88.1
Q ss_pred eEEEEEEEEeeCCCCC--CC-C--CCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEE
Q 023810 5 YEVEVTITSAKDLKNV--NW-R--HGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLII 75 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~--~~-~--~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v 75 (277)
++|.|+|+++.+|... +. . ....||||+|.+-+ ..+.+|++ +.++.||+|||+|.|.+... +-..|+|
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkv-i~nN~nPvWnE~F~F~i~~P--ELAllrf 546 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKI-IEDNWYPAWNEEFSFPLTVP--ELALLRI 546 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeee-ccCCCCcccCCeeEEEEEcC--CccEEEE
Confidence 5799999999887421 10 1 12358999999822 35668998 66679999999999998753 3357999
Q ss_pred EEEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEE
Q 023810 76 DVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAV 133 (277)
Q Consensus 76 ~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~ 133 (277)
+|||.+. ...++|||++.|||..|..+. ++++|++..|+..+.+.|-|+|
T Consensus 547 ~V~D~D~-~~~ddfiGq~~lPv~~Lr~Gy-------R~VpL~~~~G~~l~~a~Llv~f 596 (599)
T PLN02952 547 EVREYDM-SEKDDFGGQTCLPVSELRPGI-------RSVPLHDKKGEKLKNVRLLMRF 596 (599)
T ss_pred EEEecCC-CCCCCeEEEEEcchhHhcCCc-------eeEeCcCCCCCCCCCEEEEEEE
Confidence 9999885 467899999999999987753 4778877777766666666655
No 106
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.19 E-value=1.5e-10 Score=116.87 Aligned_cols=123 Identities=21% Similarity=0.251 Sum_probs=98.1
Q ss_pred eEEEEEEEEeeCCCCCC-CCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCC
Q 023810 5 YEVEVTITSAKDLKNVN-WRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNE 83 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~-~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~ 83 (277)
.+|+|+|.+|++|+..+ ..++..|||+++.+......||++ .+++.||+|||+|.+.|.. + ...|.|+|||.+.
T Consensus 436 GVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v-~~nt~nPvwNEt~Yi~lns--~-~d~L~LslyD~n~- 510 (1227)
T COG5038 436 GVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRV-KKNTLNPVWNETFYILLNS--F-TDPLNLSLYDFNS- 510 (1227)
T ss_pred EEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccce-eeccCCccccceEEEEecc--c-CCceeEEEEeccc-
Confidence 68999999999998765 335899999999985566679999 8899999999999999864 3 5689999999775
Q ss_pred CCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEEEec
Q 023810 84 EDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVRES 136 (277)
Q Consensus 84 ~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~~~ 136 (277)
..+|+++|++.++|..|....... ...++++ ...+..|.|..+++|.+.
T Consensus 511 ~~sd~vvG~~~l~L~~L~~~~~~~---ne~~e~~-~~~k~vGrL~yDl~ffp~ 559 (1227)
T COG5038 511 FKSDKVVGSTQLDLALLHQNPVKK---NELYEFL-RNTKNVGRLTYDLRFFPV 559 (1227)
T ss_pred cCCcceeeeEEechHHhhhccccc---cceeeee-ccCccceEEEEeeeeecc
Confidence 478999999999998877664322 2234443 356678999999999764
No 107
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.2e-10 Score=110.15 Aligned_cols=92 Identities=23% Similarity=0.327 Sum_probs=77.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE-C-C--CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWV-D-P--NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA 80 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l-d-~--~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~ 80 (277)
..|+|.|++|++|+..+.. +..|+||++++ + . ..+.+|.+ .+++.||+|||+|.|.|....+++..|.|+||+.
T Consensus 298 g~ltv~v~kar~L~~~~~~-~~~d~~Vk~~l~~~~~~~~kkkT~~-~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~ 375 (421)
T KOG1028|consen 298 GRLTVVVIKARNLKSMDVG-GLSDPYVKVTLLDGDKRLSKKKTSV-KKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDH 375 (421)
T ss_pred CeEEEEEEEecCCCcccCC-CCCCccEEEEEecCCceeeeeeeec-ccCCCCCcccccEEEeCCHHHhheeEEEEEEEEc
Confidence 5799999999999988754 78899999998 2 1 24568888 7899999999999999987777778899999999
Q ss_pred cCCCCCCceeEEEEEecce
Q 023810 81 GNEEDTKKLIGSAKLKLKD 99 (277)
Q Consensus 81 ~~~~~~d~~iG~~~v~L~~ 99 (277)
+. .+++++||.+.+....
T Consensus 376 d~-~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 376 DT-LGSNDLIGRCILGSDS 393 (421)
T ss_pred cc-ccccceeeEEEecCCC
Confidence 97 4788899998887654
No 108
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.12 E-value=7.1e-10 Score=107.74 Aligned_cols=118 Identities=14% Similarity=0.259 Sum_probs=87.1
Q ss_pred eEEEEEEEEeeCCCC----CCC-CCCCCCcEEEEEEC--C--CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEE
Q 023810 5 YEVEVTITSAKDLKN----VNW-RHGPNRPYAVLWVD--P--NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLII 75 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~----~~~-~~g~~dpYv~v~ld--~--~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v 75 (277)
.+|.|+|+++.++.. .+. .....||||+|.+- + ..+.+|++ .+++.||+|||+|.|.+... +-..|+|
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v-~~n~~nP~Wneef~F~l~vP--ELAllRf 545 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKI-EYDTWTPIWNKEFIFPLAVP--ELALLRV 545 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceec-cCCCCCCccCCeeEEEEEcC--ceeEEEE
Confidence 589999999998631 111 11357999999992 1 34568888 77899999999999998653 3467999
Q ss_pred EEEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCC--ceEEEEEEEE
Q 023810 76 DVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRP--HGKVDVKVAV 133 (277)
Q Consensus 76 ~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~--~G~L~l~v~~ 133 (277)
+|+|.+. ...++|||+..|||..|..+. +.++|++..|.. .-+|.++++|
T Consensus 546 ~V~d~d~-~~~ddfiGQ~~lPv~~Lr~Gy-------R~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 546 EVHEHDI-NEKDDFGGQTCLPVSEIRQGI-------HAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EEEECCC-CCCCCEEEEEEcchHHhhCcc-------ceEeccCCCcCCCCCCeeEEEEEe
Confidence 9999885 368899999999999987653 356676765543 3466666665
No 109
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.07 E-value=2.6e-09 Score=103.62 Aligned_cols=118 Identities=21% Similarity=0.280 Sum_probs=85.6
Q ss_pred eEEEEEEEEeeCCC----CCCC-CCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEE
Q 023810 5 YEVEVTITSAKDLK----NVNW-RHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLII 75 (277)
Q Consensus 5 ~~L~V~v~~A~~L~----~~~~-~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v 75 (277)
.+|.|+|+++.++. .... .....||||+|.+.+ ..+.+|++ +.++-||+|||+|.|.+... +-..|+|
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~-v~nn~nP~W~e~f~F~i~~P--eLAllRf 528 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKT-LEDNWIPAWDEVFEFPLTVP--ELALLRL 528 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEe-cCCCCCcccCCeeEEEEEcC--ceeEEEE
Confidence 47999999998742 2111 113578999999932 34678998 56668999999999987653 3367999
Q ss_pred EEEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCC--ceEEEEEEEE
Q 023810 76 DVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRP--HGKVDVKVAV 133 (277)
Q Consensus 76 ~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~--~G~L~l~v~~ 133 (277)
+|+|.+. ...++|||+..|||..|..+. +.++|++..+.. .-+|.+.+.|
T Consensus 529 ~V~d~D~-~~~ddfigq~~lPv~~Lr~Gy-------R~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 529 EVHEYDM-SEKDDFGGQTCLPVWELSQGI-------RAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred EEEECCC-CCCCcEEEEEEcchhhhhCcc-------ceEEccCCCcCCCCCeeEEEEEEe
Confidence 9999875 367899999999999987653 456777665543 4566666665
No 110
>PLN02228 Phosphoinositide phospholipase C
Probab=99.06 E-value=2.6e-09 Score=103.37 Aligned_cols=121 Identities=15% Similarity=0.272 Sum_probs=89.8
Q ss_pred eEEEEEEEEeeCCCC----CCC-CCCCCCcEEEEEECC----CCeEEeeecCCCCCCCcc-ceeEEEecCCCCCCCceEE
Q 023810 5 YEVEVTITSAKDLKN----VNW-RHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYW-DETLAIPLPGPVDDDTTLI 74 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~----~~~-~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~W-nE~f~f~v~~~~l~~~~L~ 74 (277)
.+|+|+|+++..|.. .+. .....|+||+|.+.+ ..+.+|++ .+++.||+| ||+|.|.+... +-..|+
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~-~~n~~nP~W~~e~f~F~~~~p--ELA~lR 507 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTET-AVDQWFPIWGNDEFLFQLRVP--ELALLW 507 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeec-cCCCCCceECCCeEEEEEEcC--ceeEEE
Confidence 369999999998721 111 113478999999832 34578998 566789999 99999998653 336799
Q ss_pred EEEEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCC--ceEEEEEEEEEec
Q 023810 75 IDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRP--HGKVDVKVAVRES 136 (277)
Q Consensus 75 v~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~--~G~L~l~v~~~~~ 136 (277)
|+|+|.+. ...++|||++.|||..|..+ .+.++|.+..|.. ..+|.|++++.+.
T Consensus 508 f~V~D~d~-~~~d~figq~~lPv~~Lr~G-------YR~VpL~~~~G~~l~~atLfv~~~~~~~ 563 (567)
T PLN02228 508 FKVQDYDN-DTQNDFAGQTCLPLPELKSG-------VRAVRLHDRAGKAYKNTRLLVSFALDPP 563 (567)
T ss_pred EEEEeCCC-CCCCCEEEEEEcchhHhhCC-------eeEEEccCCCCCCCCCeEEEEEEEEcCc
Confidence 99999875 36789999999999998664 2456777766653 5778888888654
No 111
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.06 E-value=5.8e-10 Score=105.55 Aligned_cols=125 Identities=16% Similarity=0.209 Sum_probs=104.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccc-eeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810 6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWD-ETLAIPLPGPVDDDTTLIIDVVHAGNEE 84 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~Wn-E~f~f~v~~~~l~~~~L~v~V~d~~~~~ 84 (277)
.|-|+|+.+|.|+..+..+...|.||.+++ .+..++|.| ..+++||.|| +.|+|.|+..+++++.|-|.+.|.+. .
T Consensus 4 kl~vki~a~r~lpvmdkasd~tdafveik~-~n~t~ktdv-f~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt-y 80 (1169)
T KOG1031|consen 4 KLGVKIKAARHLPVMDKASDLTDAFVEIKF-ANTTFKTDV-FLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT-Y 80 (1169)
T ss_pred cceeEEEeccCCcccccccccchheeEEEe-cccceehhh-hhhhcCCcccccceEEecChhhhccCCeeEEEecccc-c
Confidence 688999999999988866567899999999 588899999 6679999999 77999999888999999999999996 4
Q ss_pred CCCceeEEEEEecceeccccCC------CceeeEEEEeecCCCCCceEEEEEEEE
Q 023810 85 DTKKLIGSAKLKLKDVINDVGL------GERASLTLKLKRPSGRPHGKVDVKVAV 133 (277)
Q Consensus 85 ~~d~~iG~~~v~L~~l~~~~~~------~~~~~~~~~L~~~sg~~~G~L~l~v~~ 133 (277)
+-++-||++.|.|.-|...... +.....|+++.+.-...+|+|+|-|++
T Consensus 81 sandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkv 135 (1169)
T KOG1031|consen 81 SANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKV 135 (1169)
T ss_pred ccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEE
Confidence 7788999999999876543221 233578999988777789999988876
No 112
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.01 E-value=2.9e-09 Score=104.00 Aligned_cols=120 Identities=18% Similarity=0.224 Sum_probs=90.5
Q ss_pred EEEEEEEEeeCCCC-CCC--CCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEE
Q 023810 6 EVEVTITSAKDLKN-VNW--RHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVV 78 (277)
Q Consensus 6 ~L~V~v~~A~~L~~-~~~--~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~ 78 (277)
+|.|+|+++.++.. .+. +....||||.|++-+ ..+.+|++..+++-||.|+|+|.|.|+..+ -.-|+|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPE--LAliRF~V~ 694 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPE--LALIRFEVH 694 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccc--eeEEEEEEE
Confidence 79999999996543 221 224579999999832 345789865889999999999999987643 357999999
Q ss_pred EccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCC--CceEEEEEEEEEe
Q 023810 79 HAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGR--PHGKVDVKVAVRE 135 (277)
Q Consensus 79 d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~--~~G~L~l~v~~~~ 135 (277)
|.+. .+.|+|+|+..+|+..|..+. +.++|.+..|. ..-+|.|++++.+
T Consensus 695 d~d~-~~~ddF~GQ~tlP~~~L~~Gy-------RhVpL~~~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 695 DYDY-IGKDDFIGQTTLPVSELRQGY-------RHVPLLSREGEALSSASLFVRIAIVE 745 (746)
T ss_pred ecCC-CCcccccceeeccHHHhhCce-------eeeeecCCCCccccceeEEEEEEEec
Confidence 9996 467999999999999987652 34566555554 4677777777754
No 113
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.99 E-value=1.3e-09 Score=110.36 Aligned_cols=123 Identities=18% Similarity=0.273 Sum_probs=95.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE 84 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~ 84 (277)
..|+|.+.++.+|+..+.+ +.+||||++.+..+..++|++ +++++||+|||.|.+.|.+. ....|+|.|+|++. .
T Consensus 1040 G~l~I~~~~~~nl~~~d~n-g~sDpfv~~~ln~k~vyktkv-~KktlNPvwNEe~~i~v~~r--~~D~~~i~v~Dwd~-~ 1114 (1227)
T COG5038 1040 GYLTIMLRSGENLPSSDEN-GYSDPFVKLFLNEKSVYKTKV-VKKTLNPVWNEEFTIEVLNR--VKDVLTINVNDWDS-G 1114 (1227)
T ss_pred CcEEEEEeccCCCcccccC-CCCCceEEEEecceecccccc-hhccCCCCccccceEeeecc--ccceEEEEEeeccc-C
Confidence 5689999999999998864 889999999996566789999 78899999999999999762 13468899999885 5
Q ss_pred CCCceeEEEEEecceeccccCCCceeeEEEEeecC-CCCCceEEEEEEEEEec
Q 023810 85 DTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP-SGRPHGKVDVKVAVRES 136 (277)
Q Consensus 85 ~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~-sg~~~G~L~l~v~~~~~ 136 (277)
.++++||.+.|+|..|..+... .....|..+ .....|.++....|+..
T Consensus 1115 ~knd~lg~~~idL~~l~~~~~~----n~~i~ldgk~~~~~~g~~~~~~~~r~~ 1163 (1227)
T COG5038 1115 EKNDLLGTAEIDLSKLEPGGTT----NSNIPLDGKTFIVLDGTLHPGFNFRSK 1163 (1227)
T ss_pred CCccccccccccHhhcCcCCcc----ceeeeccCcceEecccEeecceecchh
Confidence 7889999999999988765422 222333222 23556777777777654
No 114
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.99 E-value=2.8e-09 Score=104.17 Aligned_cols=119 Identities=19% Similarity=0.273 Sum_probs=88.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE-----CCCCeEEeeecCCCCCCCccc-eeEEEecCCCCCCCceEEEEEE
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWV-----DPNKKCSTKVDDEGDTCPYWD-ETLAIPLPGPVDDDTTLIIDVV 78 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l-----d~~~~~~T~v~~~~~~nP~Wn-E~f~f~v~~~~l~~~~L~v~V~ 78 (277)
-+|.|.|+.||.|...+ + +...|||+|.+ |.+...+|.| ..+++||+|| |+|+|.|.+. +-..|+|.|+
T Consensus 1065 ~~lsv~vigaRHL~k~g-r-~i~cPfVevEiiGa~~Dt~~~~t~~V-~dNGlnPiWn~e~ftFeI~nP--e~A~lRF~V~ 1139 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-R-SIACPFVEVEIIGAEYDTNKFKTTVV-NDNGLNPIWNPEKFTFEIYNP--EFAFLRFVVY 1139 (1267)
T ss_pred eEEEEEEeeccccccCC-C-CccCCcEEEEEeccccCCCceEEEEe-ccCCCCCCCCCcceEEEeeCC--ceEEEEEEEe
Confidence 36889999999998655 2 56779999998 4334445555 8999999999 9999999873 4578999999
Q ss_pred EccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecC-CC-CCceEEEEEEEEEec
Q 023810 79 HAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP-SG-RPHGKVDVKVAVRES 136 (277)
Q Consensus 79 d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~-sg-~~~G~L~l~v~~~~~ 136 (277)
+.+. ++...||+++.+||..|..+ .++++|++. +. -.-.+|.|.+...+.
T Consensus 1140 eeDm-fs~~~FiaqA~yPv~~ik~G-------fRsVpLkN~ySEdlELaSLLv~i~m~~~ 1191 (1267)
T KOG1264|consen 1140 EEDM-FSDPNFLAQATYPVKAIKSG-------FRSVPLKNGYSEDLELASLLVFIEMRPV 1191 (1267)
T ss_pred cccc-cCCcceeeeeecchhhhhcc-------ceeeecccCchhhhhhhhheeeeEeccc
Confidence 9996 57778999999999887654 355666553 11 123455666666543
No 115
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.96 E-value=1.6e-10 Score=111.54 Aligned_cols=122 Identities=21% Similarity=0.381 Sum_probs=92.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC----C--------------------------eEEeeecCCCCCCCcc
Q 023810 6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN----K--------------------------KCSTKVDDEGDTCPYW 55 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~----~--------------------------~~~T~v~~~~~~nP~W 55 (277)
.|.|.+..|++|...+. +|.+|||+.+.+-+. . ...|.| ++.++||.|
T Consensus 115 ~l~is~~~ak~l~akd~-ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsv-k~~TLnPkW 192 (1103)
T KOG1328|consen 115 LLNISLLEAKDLIAKDV-NGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSV-KKKTLNPKW 192 (1103)
T ss_pred HHHHHHHHhcCccccCC-CCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccc-ccccCCcch
Confidence 35577788999988775 489999998766110 0 124666 678999999
Q ss_pred ceeEEEecCCCCCCCceEEEEEEEccCCC--------------------------------C---CCceeEEEEEeccee
Q 023810 56 DETLAIPLPGPVDDDTTLIIDVVHAGNEE--------------------------------D---TKKLIGSAKLKLKDV 100 (277)
Q Consensus 56 nE~f~f~v~~~~l~~~~L~v~V~d~~~~~--------------------------------~---~d~~iG~~~v~L~~l 100 (277)
+|+|.|+|.. .....+++.|||++... + .|+|||.++|||.+|
T Consensus 193 ~EkF~F~IeD--v~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~Ei 270 (1103)
T KOG1328|consen 193 SEKFQFTIED--VQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEI 270 (1103)
T ss_pred hhheeeehhc--cccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcC
Confidence 9999999976 56778999999975320 2 379999999999998
Q ss_pred ccccCCCceeeEEEEe--ecCCCCCceEEEEEEEEEec
Q 023810 101 INDVGLGERASLTLKL--KRPSGRPHGKVDVKVAVRES 136 (277)
Q Consensus 101 ~~~~~~~~~~~~~~~L--~~~sg~~~G~L~l~v~~~~~ 136 (277)
.... ...||.| |+...+++|.++|++++...
T Consensus 271 P~~G-----ld~WFkLepRS~~S~VqG~~~LklwLsT~ 303 (1103)
T KOG1328|consen 271 PPDG-----LDQWFKLEPRSDKSKVQGQVKLKLWLSTK 303 (1103)
T ss_pred Ccch-----HHHHhccCcccccccccceEEEEEEEeee
Confidence 7653 2456666 44467889999999999765
No 116
>PLN02352 phospholipase D epsilon
Probab=98.82 E-value=4.1e-08 Score=97.40 Aligned_cols=117 Identities=17% Similarity=0.221 Sum_probs=87.1
Q ss_pred eEEEEEEEEeeCCCCC----CCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810 5 YEVEVTITSAKDLKNV----NWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA 80 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~----~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~ 80 (277)
.+|++||.+|+-+... .......++||.+.++.....|| ++..||+|||+|.+.|... -+..|.|.|.|.
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt----~~~~~p~w~e~f~i~~ah~--~~~~~~f~vk~~ 83 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT----SHEYDRVWNQTFQILCAHP--LDSTITITLKTK 83 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC----CCCCCCccccceeEEeeee--cCCcEEEEEecC
Confidence 5799999999854321 11101239999999976666788 3456999999999999762 235799999873
Q ss_pred cCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCC-c-eEEEEEEEEEec
Q 023810 81 GNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRP-H-GKVDVKVAVRES 136 (277)
Q Consensus 81 ~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~-~-G~L~l~v~~~~~ 136 (277)
..+||.+.||+.+|++.. +....||+|...++++ + -+|+|+++|.+.
T Consensus 84 ------~~~ig~~~~p~~~~~~g~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 132 (758)
T PLN02352 84 ------CSILGRFHIQAHQIVTEA---SFINGFFPLIMENGKPNPELKLRFMLWFRPA 132 (758)
T ss_pred ------CeEEEEEEEEHHHhhCCC---cccceEEEcccCCCCCCCCCEEEEEEEEEEh
Confidence 368999999999998752 2367889987766654 3 489999999886
No 117
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=98.66 E-value=1.3e-08 Score=93.11 Aligned_cols=125 Identities=22% Similarity=0.242 Sum_probs=94.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCcEEEEEE----CCCCeEEeeecCCCCCCCccceeEEEecCCC---------CCCCce
Q 023810 6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWV----DPNKKCSTKVDDEGDTCPYWDETLAIPLPGP---------VDDDTT 72 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l----d~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~---------~l~~~~ 72 (277)
+|+++|+++.++...+. ....|.|+++.+ |...+.+|.| ++++.+|.|+|.|.+++... .+.+..
T Consensus 368 elel~ivrg~~~pvp~g-p~hld~fvr~efpl~nD~~qk~kt~v-ik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g 445 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVPGG-PMHLDQFVRLEFPLENDSRQKLKTDV-IKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG 445 (523)
T ss_pred HhHHHHhhcccCCCCCC-chhHHhhhcccccccccccccCccce-eeCCCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence 57788888888765442 134577888876 3456678888 88999999999999998761 223456
Q ss_pred EEEEEEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEEEec
Q 023810 73 LIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVRES 136 (277)
Q Consensus 73 L~v~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~~~ 136 (277)
+.|+||++..+..+|+|+|.++|.|.-|.+.. .....|.|++-..-..|+|.++|+++.+
T Consensus 446 ~kfeifhkggf~rSdkl~gt~nikle~Len~c----ei~e~~~l~DGRK~vGGkLevKvRiR~P 505 (523)
T KOG3837|consen 446 KKFEIFHKGGFNRSDKLTGTGNIKLEILENMC----EICEYLPLKDGRKAVGGKLEVKVRIRQP 505 (523)
T ss_pred eeEEEeeccccccccceeceeeeeehhhhccc----chhhceeccccccccCCeeEEEEEEecc
Confidence 89999999988889999999999998776542 2344566765555568999999999875
No 118
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.63 E-value=1.4e-08 Score=98.31 Aligned_cols=94 Identities=26% Similarity=0.319 Sum_probs=78.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCC------eEEeeecCCCCCCCccceeEEEecCCCCCC--CceEEEE
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNK------KCSTKVDDEGDTCPYWDETLAIPLPGPVDD--DTTLIID 76 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~------~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~--~~~L~v~ 76 (277)
-+|.|.|+.|+++...+- ||-+||||++.+.+.. .++|+| ..+++||+|+|+|.|.|+.+... ...|.|+
T Consensus 947 q~L~veVlhA~diipLD~-NGlSDPFVviEl~P~~~fp~v~~q~T~V-~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FT 1024 (1103)
T KOG1328|consen 947 QTLVVEVLHAKDIIPLDS-NGLSDPFVVIELIPKFRFPAVPVQKTKV-VSRTLNPVFDETFEFSVPPEPCSTETAMLHFT 1024 (1103)
T ss_pred cchhhhhhccccccccCC-CCCCCCeEEEEeccccccccchhhhhhh-hhccccchhhhheeeecCccccccccceEEEE
Confidence 468899999999988774 5999999999996542 469999 78899999999999999886332 4569999
Q ss_pred EEEccCCCCCCceeEEEEEecceec
Q 023810 77 VVHAGNEEDTKKLIGSAKLKLKDVI 101 (277)
Q Consensus 77 V~d~~~~~~~d~~iG~~~v~L~~l~ 101 (277)
|+|++- ...++|-|++-+.|.++.
T Consensus 1025 VMDHD~-L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1025 VMDHDY-LRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred eeccce-ecccccchHHHHhhCCCC
Confidence 999996 579999999999888764
No 119
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=3.2e-08 Score=88.36 Aligned_cols=128 Identities=20% Similarity=0.247 Sum_probs=90.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEe-cCCCCCCCceEEEEEEE
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIP-LPGPVDDDTTLIIDVVH 79 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~-v~~~~l~~~~L~v~V~d 79 (277)
..+.++|..|++|+..++ ++..|+|+.+.+.+ ..+.+|++ ..++.||.|||+.... |..+......+++.|++
T Consensus 93 ~~~~~tl~~a~~lk~~~~-~~~~d~~~~~~llpga~kl~slr~~t-~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcd 170 (362)
T KOG1013|consen 93 RMLDTTLDRAKGLKPMDI-NGLADPYVKLHLLPGAGKLNSLRTKT-TRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCD 170 (362)
T ss_pred hhcceeechhcccchhhh-hhhcchHHhhhcccchhhhhhhhHHh-hccCcCcceeccceecccccchhhhhhhheeecc
Confidence 378999999999999885 49999999999843 24578888 7889999999887655 33334456778899999
Q ss_pred ccCCCCCCceeEEEEEecceeccccCCCceeeEEEEee--c---CCCCCceEEEEEEEEEe
Q 023810 80 AGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLK--R---PSGRPHGKVDVKVAVRE 135 (277)
Q Consensus 80 ~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~--~---~sg~~~G~L~l~v~~~~ 135 (277)
+..+ .+++++|+.+|.|..|.......-...+...|. + ..-+.+|+|.+++.|..
T Consensus 171 n~~~-~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s 230 (362)
T KOG1013|consen 171 NDKK-THNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSS 230 (362)
T ss_pred Cccc-ccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCc
Confidence 8874 688999999999888765543211111122221 1 12256788888877744
No 120
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.38 E-value=4.9e-07 Score=87.70 Aligned_cols=120 Identities=18% Similarity=0.232 Sum_probs=82.6
Q ss_pred EEEEeeCCCCCCCCCCCCCcEEEEEECC---CCeEEeeecCCCCCCCccceeEEEecCCC-----------CC--CCceE
Q 023810 10 TITSAKDLKNVNWRHGPNRPYAVLWVDP---NKKCSTKVDDEGDTCPYWDETLAIPLPGP-----------VD--DDTTL 73 (277)
Q Consensus 10 ~v~~A~~L~~~~~~~g~~dpYv~v~ld~---~~~~~T~v~~~~~~nP~WnE~f~f~v~~~-----------~l--~~~~L 73 (277)
.+++++++-... ++.+|||+++..-+ ....+|++ ++.+.||.|||.|.|.+... +. .-..|
T Consensus 136 ~~L~~r~~~P~~--~~~~dp~~~v~~~g~~~~~~~~T~~-~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~i 212 (800)
T KOG2059|consen 136 HVLKTRQGLPII--NGQCDPFARVTLCGPSKLKEKKTKV-KKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEI 212 (800)
T ss_pred hhhhhcccCcee--CCCCCcceEEeecccchhhccccce-eeeccCcchhhheeeeeccccccccchhcCcccCCceeeE
Confidence 334445444332 36799999988732 23358888 77899999999999998763 00 12458
Q ss_pred EEEEEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeec-C------CCCCceEEEEEEEEEec
Q 023810 74 IIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKR-P------SGRPHGKVDVKVAVRES 136 (277)
Q Consensus 74 ~v~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~-~------sg~~~G~L~l~v~~~~~ 136 (277)
.|++|+.......+.|+|+++|++..+..... ...||.|.. + .+..-|.|++.+.+.+-
T Consensus 213 rv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~----p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D 278 (800)
T KOG2059|consen 213 RVDLWNDLNLVINDVFLGEVRVPVDVLRQKSS----PAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTED 278 (800)
T ss_pred EEeeccchhhhhhhhhceeEEeehhhhhhccC----ccceEEEecCCCcccCCCCCCccceeeeEEeeec
Confidence 89999955445568999999999988763322 245666642 1 23457999999999875
No 121
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.35 E-value=8.4e-07 Score=69.58 Aligned_cols=105 Identities=17% Similarity=0.313 Sum_probs=74.0
Q ss_pred EEEEEEEeeCCCCCC---------C---CCCCCCcEEEEEE---CCCCeEEeeecCCCCCCCccceeEEEecC-------
Q 023810 7 VEVTITSAKDLKNVN---------W---RHGPNRPYAVLWV---DPNKKCSTKVDDEGDTCPYWDETLAIPLP------- 64 (277)
Q Consensus 7 L~V~v~~A~~L~~~~---------~---~~g~~dpYv~v~l---d~~~~~~T~v~~~~~~nP~WnE~f~f~v~------- 64 (277)
|.|.|+.|.+|+..- + ..--.|.|+++.+ ...++++|++ +.++-.|.||..+.|.++
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~Trt-VArSFcPeF~Hh~Efpc~lv~~~~~ 79 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRT-VARSFCPEFNHHVEFPCNLVVQRNS 79 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccc-hhhhcCCCccceEEEecccEEEcCC
Confidence 467788888875320 0 0123689999986 3456778988 788999999999999887
Q ss_pred -C-----CCCCCceEEEEEEEccCC---------CCCCceeEEEEEecceeccccCCCceeeEEEE
Q 023810 65 -G-----PVDDDTTLIIDVVHAGNE---------EDTKKLIGSAKLKLKDVINDVGLGERASLTLK 115 (277)
Q Consensus 65 -~-----~~l~~~~L~v~V~d~~~~---------~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~ 115 (277)
+ +.|+...|.|+|||+... ...|=+||.+.||+.+|+.+.. | ...||+
T Consensus 80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rs-G--itGW~p 142 (143)
T cd08683 80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRS-G--ITGWYP 142 (143)
T ss_pred CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhccc-C--cccccc
Confidence 2 135667899999997532 1234489999999999987632 2 345655
No 122
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=1.5e-06 Score=83.83 Aligned_cols=106 Identities=25% Similarity=0.323 Sum_probs=82.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE------CCCCeEEeeecCCCCCCCccceeEEEecCCC-CCCCceEEEEE
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWV------DPNKKCSTKVDDEGDTCPYWDETLAIPLPGP-VDDDTTLIIDV 77 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l------d~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~-~l~~~~L~v~V 77 (277)
+.++|.|+.|.+|+-.. .+.-.||+.+.+ |.++++.|++ ..++-.|.+||+|.|.+.+. ..+.-.|.|+|
T Consensus 1125 hkvtvkvvaandlkwqt--sgmFrPFVEV~ivGP~lsDKKRK~~TKt-KsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~V 1201 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKWQT--SGMFRPFVEVHIVGPHLSDKKRKFSTKT-KSNNWAPKYNETFHFFLGNEGGPEHYELQFCV 1201 (1283)
T ss_pred ceEEEEEEecccccchh--ccccccceEEEEecCcccchhhhccccc-cCCCcCcccCceeEEEeccCCCCceEEEEEee
Confidence 46889999999997432 266789999988 3356678888 77888899999999998764 34456799999
Q ss_pred EEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeec
Q 023810 78 VHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKR 118 (277)
Q Consensus 78 ~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~ 118 (277)
.|.. +...|+.||.+.+.|+++..+.. .-.|++|-+
T Consensus 1202 KDYC-FAReDRvvGl~VlqL~~va~kGS----~a~W~pLgr 1237 (1283)
T KOG1011|consen 1202 KDYC-FAREDRVVGLAVLQLRSVADKGS----CACWVPLGR 1237 (1283)
T ss_pred hhhe-eecccceeeeeeeehhhHhhcCc----eeEeeeccc
Confidence 9977 45678899999999999988743 346777743
No 123
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=98.31 E-value=1e-06 Score=64.57 Aligned_cols=93 Identities=17% Similarity=0.176 Sum_probs=69.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCcEEE--EEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810 7 VEVTITSAKDLKNVNWRHGPNRPYAV--LWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE 84 (277)
Q Consensus 7 L~V~v~~A~~L~~~~~~~g~~dpYv~--v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~ 84 (277)
+-|||+.|+||.-.+.......-|++ +.+......+|.+ ..+..||+|+|+|.|.+..-.+.+..|.|.|+..-
T Consensus 1 iwitv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~-rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~--- 76 (103)
T cd08684 1 IWITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSA-KEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQT--- 76 (103)
T ss_pred CEEEEEEecccccccccCcCCeeEEEEEEecCCCccccchh-hcCCCChhHHHHHHHHHHHhhccceEEEEEeeccC---
Confidence 35899999999644322122334665 4444445678888 78899999999999998876677888999999843
Q ss_pred CCCceeEEEEEecceeccc
Q 023810 85 DTKKLIGSAKLKLKDVIND 103 (277)
Q Consensus 85 ~~d~~iG~~~v~L~~l~~~ 103 (277)
.+++.||.+.+.|+++-.+
T Consensus 77 ~RKe~iG~~sL~l~s~gee 95 (103)
T cd08684 77 PRKRTIGECSLSLRTLSTQ 95 (103)
T ss_pred CccceeeEEEeecccCCHH
Confidence 4778899999999886543
No 124
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.18 E-value=1.4e-06 Score=88.44 Aligned_cols=106 Identities=20% Similarity=0.218 Sum_probs=82.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEe-cCCCCCCCceEEEEEEE
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIP-LPGPVDDDTTLIIDVVH 79 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~-v~~~~l~~~~L~v~V~d 79 (277)
.+|.|-|..+|+|....- ....||||++++.+ ..|++|+| ..++.||.|||.+..+ +..+.+..+.|-+.||.
T Consensus 1524 ~~LtImV~H~K~L~~Lqd-g~~P~pyVK~YLlPdp~k~sKRKTKv-vrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1524 GTLTIMVMHAKGLALLQD-GQDPDPYVKTYLLPDPRKTSKRKTKV-VRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred ceEEEEhhhhcccccccC-CCCCCcceeEEecCCchHhhhhhhcc-ccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 578999999999954321 25789999999933 24679999 7889999999999887 44444566889999999
Q ss_pred ccCCCCCCceeEEEEEecceeccccCCCceeeEEEEee
Q 023810 80 AGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLK 117 (277)
Q Consensus 80 ~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~ 117 (277)
... ...+.|+|.+.|+|.++.... ....||+|.
T Consensus 1602 ~~~-~~en~~lg~v~i~L~~~~l~k----E~~~Wy~lg 1634 (1639)
T KOG0905|consen 1602 NGG-LLENVFLGGVNIPLLKVDLLK----ESVGWYNLG 1634 (1639)
T ss_pred ccc-eeeeeeeeeeecchhhcchhh----hhcceeecc
Confidence 886 468899999999999875542 234788873
No 125
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=9.3e-06 Score=72.88 Aligned_cols=89 Identities=19% Similarity=0.187 Sum_probs=73.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA 80 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~ 80 (277)
.-|.|+++.|..|...+. ++-+||||.+++++ ..+.+|.+ .+++.||.||+.|.|.+....|...++.|.||+.
T Consensus 233 ~~l~vt~iRc~~l~ssDs-ng~sDpyvS~~l~pdv~~~fkkKt~~-~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~ 310 (362)
T KOG1013|consen 233 PGLIVTIIRCSHLASSDS-NGYSDPYVSQRLSPDVGKKFKKKTQQ-KKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDY 310 (362)
T ss_pred CceEEEEEEeeeeecccc-CCCCCccceeecCCCcchhhcccCcc-hhccCCccccccccccCCccchhcceEEEeeccc
Confidence 358899999999988774 48999999999943 34568888 7889999999999999998777777899999998
Q ss_pred cCCCCCCceeEEEEEe
Q 023810 81 GNEEDTKKLIGSAKLK 96 (277)
Q Consensus 81 ~~~~~~d~~iG~~~v~ 96 (277)
+. ....+++|-+..-
T Consensus 311 ~~-G~s~d~~GG~~~g 325 (362)
T KOG1013|consen 311 DI-GKSNDSIGGSMLG 325 (362)
T ss_pred CC-CcCccCCCccccc
Confidence 85 5578888875543
No 126
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=97.64 E-value=0.00025 Score=70.83 Aligned_cols=100 Identities=22% Similarity=0.295 Sum_probs=72.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE-----CC-CCeEEeeecCCCCCCCcccee-EEEe-cCCCCCCCceEEEE
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWV-----DP-NKKCSTKVDDEGDTCPYWDET-LAIP-LPGPVDDDTTLIID 76 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l-----d~-~~~~~T~v~~~~~~nP~WnE~-f~f~-v~~~~l~~~~L~v~ 76 (277)
.+|.|+|+++.-|..+. ...||.|.+ |. .+.+||++...++.||+|||. |.|. |-..+ -..|+|.
T Consensus 703 ~t~sV~VISgqFLSdrk-----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpe--LA~lRia 775 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRK-----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPE--LASLRIA 775 (1189)
T ss_pred eeEEEEEEeeeeccccc-----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccc--hhheeee
Confidence 68999999999987544 358999887 21 245788887889999999955 7776 32212 3579999
Q ss_pred EEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCC
Q 023810 77 VVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRP 123 (277)
Q Consensus 77 V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~ 123 (277)
||+++. +|||.-.+||..|..+. +. +.||+++..+
T Consensus 776 vyeEgg-----K~ig~RIlpvd~l~~GY-----rh--v~LRse~Nqp 810 (1189)
T KOG1265|consen 776 VYEEGG-----KFIGQRILPVDGLNAGY-----RH--VCLRSESNQP 810 (1189)
T ss_pred eeccCC-----ceeeeeccchhcccCcc-----ee--EEecCCCCCc
Confidence 998874 68999999999876653 22 3466665544
No 127
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.64 E-value=3.9e-05 Score=77.27 Aligned_cols=90 Identities=19% Similarity=0.278 Sum_probs=71.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCe-EEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCC
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKK-CSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNE 83 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~-~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~ 83 (277)
..++|.|++|.+|...+.. +..|||+++.+.++.. -++.. +.+++||+|++-|.+.+.-. ....|+|+||+.+.
T Consensus 613 ~LvrVyvv~A~~L~p~D~n-g~adpYv~l~lGk~~~~d~~~y-ip~tlnPVfgkmfel~~~lp--~ek~l~v~vyd~D~- 687 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSDGN-GDADPYVKLLLGKKRTLDRAHY-IPNTLNPVFGKMFELECLLP--FEKDLIVEVYDHDL- 687 (1105)
T ss_pred eeEEEEEEEeeeccccCCC-CCcCceeeeeeccchhhhhhhc-CcCCCCcHHHHHHHhhcccc--hhhcceeEEEEeec-
Confidence 3578999999999988854 9999999999953322 24444 78999999999988876542 24568999999996
Q ss_pred CCCCceeEEEEEecce
Q 023810 84 EDTKKLIGSAKLKLKD 99 (277)
Q Consensus 84 ~~~d~~iG~~~v~L~~ 99 (277)
...++.||+.+|.|++
T Consensus 688 ~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 688 EAQDEKIGETTIDLEN 703 (1105)
T ss_pred ccccchhhceehhhhh
Confidence 5788899999999876
No 128
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=97.56 E-value=0.0024 Score=51.21 Aligned_cols=123 Identities=15% Similarity=0.279 Sum_probs=78.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCC--eEEeeecCCCCCCCccceeEEEecCCC------CCCCceEEEE
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNK--KCSTKVDDEGDTCPYWDETLAIPLPGP------VDDDTTLIID 76 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~--~~~T~v~~~~~~nP~WnE~f~f~v~~~------~l~~~~L~v~ 76 (277)
..+.|+|.+..++... ....++++...... ..+|......+..-.|||.|.+.++-. .++...|.|.
T Consensus 7 f~~~l~i~~l~~~p~~-----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 7 FQFDLTIHELENLPSS-----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred EEEEEEEEEeECcCCC-----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 4678889998888752 22345555443232 345544344556789999998875331 3566678999
Q ss_pred EEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEEEec
Q 023810 77 VVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVRES 136 (277)
Q Consensus 77 V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~~~ 136 (277)
|+..... +.+..||.+.|.|.++.... .+.....+.|.. +.....+|+|+|++..-
T Consensus 82 v~~~~~~-~~k~~lG~~~inLaey~~~~--~~~~~~~~~l~~-~~~~~a~L~isi~~~~~ 137 (143)
T PF10358_consen 82 VFEVDGS-GKKKVLGKVSINLAEYANED--EEPITVRLLLKK-CKKSNATLSISISLSEL 137 (143)
T ss_pred EEEecCC-CccceEEEEEEEHHHhhCcC--CCcEEEEEeCcc-CCCCCcEEEEEEEEEEC
Confidence 9887421 23358999999999998753 123455666644 34557888888888654
No 129
>smart00157 PRP Major prion protein. The prion protein is a major component of scrapie-associated fibrils in Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler syndrome and bovine spongiform encephalopathy.
Probab=97.48 E-value=0.00026 Score=58.56 Aligned_cols=48 Identities=25% Similarity=0.328 Sum_probs=39.1
Q ss_pred cccccCCCchhHHHHHHHHHHHhHhhhhhhhhhhhhhhhHHHHhhhhc
Q 023810 221 KKKSKFGGMGTGLAVGAVGGILGGLALAEGVDALEDHIADEAAEKVED 268 (277)
Q Consensus 221 ~~~~~~~g~g~g~~~g~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~ 268 (277)
+.+..||.|...+++|+++|+++|.+|+.+|....-++.++.||++=+
T Consensus 81 KP~~~~k~~~~aAgagAv~g~~~GY~lG~~m~rp~~~F~np~EeryYn 128 (217)
T smart00157 81 KPKTNMKHVAGAAAAGAVVGGLGGYMLGSAMSRPLIHFGNDYEDRYYR 128 (217)
T ss_pred CCCcchHHHHHhhhcchhhhhccccccccccCCCccccCChHHHHHHH
Confidence 444556678778889999999999999999998888888888887533
No 130
>PLN02964 phosphatidylserine decarboxylase
Probab=97.48 E-value=0.00019 Score=71.06 Aligned_cols=85 Identities=16% Similarity=0.234 Sum_probs=66.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCc-EEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810 6 EVEVTITSAKDLKNVNWRHGPNRP-YAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE 84 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~~g~~dp-Yv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~ 84 (277)
.+.|+|++|+ .. ..|+ ++.+++ +.+.+||.+ .+++.||+||+...|.|..+.. ...+|.|||.++ +
T Consensus 55 ~~~~~~~~~~----~~----~~~~~~~~~~~-g~~~f~t~~-~~~~~~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~ 121 (644)
T PLN02964 55 IALLTLVGAE----MK----FKDKWLACVSF-GEQTFRTET-SDSTDKPVWNSEKKLLLEKNGP--HLARISVFETNR-L 121 (644)
T ss_pred eEEEEeehhh----hc----cCCcEEEEEEe-cceeeeecc-ccccCCcccchhhceEeccCCc--ceEEEEEEecCC-C
Confidence 5678888886 22 2255 455666 588899999 7889999999999999877543 346999999997 4
Q ss_pred CCCceeEEEEEecceeccc
Q 023810 85 DTKKLIGSAKLKLKDVIND 103 (277)
Q Consensus 85 ~~d~~iG~~~v~L~~l~~~ 103 (277)
+.+++++.++++|.++..+
T Consensus 122 s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 122 SKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred CHHHhhhheeecHhhccHH
Confidence 7899999999988776655
No 131
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.42 E-value=0.00064 Score=67.28 Aligned_cols=18 Identities=6% Similarity=0.054 Sum_probs=12.3
Q ss_pred CCCCCCccceeEEEecCC
Q 023810 48 EGDTCPYWDETLAIPLPG 65 (277)
Q Consensus 48 ~~~~nP~WnE~f~f~v~~ 65 (277)
.++.+|.|.-.|+|+|+-
T Consensus 439 r~~~DPdf~yr~~l~id~ 456 (1102)
T KOG1924|consen 439 RTGMDPDFKYRFRLDIDL 456 (1102)
T ss_pred cCCCCCCcchhhcccCcH
Confidence 456788887777776643
No 132
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.35 E-value=0.0014 Score=65.03 Aligned_cols=10 Identities=20% Similarity=0.581 Sum_probs=5.0
Q ss_pred EEEecceecc
Q 023810 93 AKLKLKDVIN 102 (277)
Q Consensus 93 ~~v~L~~l~~ 102 (277)
..|++..|++
T Consensus 452 l~id~~~liD 461 (1102)
T KOG1924|consen 452 LDIDLTELID 461 (1102)
T ss_pred ccCcHHHHHH
Confidence 3455555544
No 133
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=97.30 E-value=0.0017 Score=48.03 Aligned_cols=86 Identities=22% Similarity=0.278 Sum_probs=62.0
Q ss_pred CCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCCCCceeEEEEEecceecccc
Q 023810 25 GPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDV 104 (277)
Q Consensus 25 g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~~d~~iG~~~v~L~~l~~~~ 104 (277)
|+.+..+++.+|.+....|.- +.-.+-.|+++|.|+++. .+.|.|.||-++- ..+.|...+.|++...+
T Consensus 7 ~~~eV~avLklDn~~VgqT~W--k~~s~q~WDQ~Fti~LdR----sRELEI~VywrD~----RslCav~~lrLEd~~~~- 75 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQW--KPKSNQAWDQSFTLELER----SRELEIAVYWRDW----RSLCAVKFLKLEDERHE- 75 (98)
T ss_pred cccceEEEEEEcCeEEeeccc--cccccccccceeEEEeec----ccEEEEEEEEecc----hhhhhheeeEhhhhccc-
Confidence 456788999998556667765 334688999999999975 5789999998873 36788888888883221
Q ss_pred CCCceeeEEEEeecCCCCCceEEEEEEEE
Q 023810 105 GLGERASLTLKLKRPSGRPHGKVDVKVAV 133 (277)
Q Consensus 105 ~~~~~~~~~~~L~~~sg~~~G~L~l~v~~ 133 (277)
..+.| .++|.|...++|
T Consensus 76 -------~~~~l-----epqg~l~~ev~f 92 (98)
T cd08687 76 -------VQLDM-----EPQLCLVAELTF 92 (98)
T ss_pred -------ceecc-----ccccEEEEEEEe
Confidence 12222 357888887777
No 134
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.00028 Score=64.58 Aligned_cols=112 Identities=21% Similarity=0.181 Sum_probs=80.5
Q ss_pred CCCceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC----CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEE
Q 023810 1 MASRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN----KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIID 76 (277)
Q Consensus 1 m~~~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~----~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~ 76 (277)
|.+...|+|.|+.|++|.........+.|||+|++..+ .+.+|+. ..++.+|.+-....|+-.. ....|-+.
T Consensus 265 ~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~-A~kT~~plyqq~l~f~~sp---~~k~Lq~t 340 (405)
T KOG2060|consen 265 MDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKS-ARKTLDPLYQQQLSFDQSP---PGKYLQGT 340 (405)
T ss_pred hcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceeccccccc-ccccCchhhhhhhhhccCC---CccEEEEE
Confidence 67778999999999999765434347789999998332 3457777 4567777666667776654 46779999
Q ss_pred EEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecC
Q 023810 77 VVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP 119 (277)
Q Consensus 77 V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~ 119 (277)
||..-.....+.|+|.+.|-|.||-... .-...||.|.-.
T Consensus 341 v~gdygRmd~k~fmg~aqi~l~eL~ls~---~~~igwyKlfgs 380 (405)
T KOG2060|consen 341 VWGDYGRMDHKSFMGVAQIMLDELNLSS---SPVIGWYKLFGS 380 (405)
T ss_pred EeccccccchHHHhhHHHHHhhhhcccc---ccceeeeeccCC
Confidence 9985544467789999999988875542 124678888543
No 135
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=97.18 E-value=0.0054 Score=50.46 Aligned_cols=91 Identities=13% Similarity=0.155 Sum_probs=61.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE-CCCCe----EEeeecCCCCCCCccceeEEEecCCCCCC-CceEEEEEE
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWV-DPNKK----CSTKVDDEGDTCPYWDETLAIPLPGPVDD-DTTLIIDVV 78 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l-d~~~~----~~T~v~~~~~~nP~WnE~f~f~v~~~~l~-~~~L~v~V~ 78 (277)
..++|+|++++++... ...+.|+.+.+ ++.+. ..|+. +. ..++.|||.++|+|.-.++. ...|.|+||
T Consensus 8 ~~~~v~i~~~~~~~~~----~~~~l~V~v~l~~g~~~L~~pv~T~~-v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~ 81 (158)
T cd08398 8 SNLRIKILCATYVNVN----DIDKIYVRTGIYHGGEPLCDNVNTQR-VP-CSNPRWNEWLDYDIYIPDLPRSARLCLSIC 81 (158)
T ss_pred CCeEEEEEeeccCCCC----CcCeEEEEEEEEECCEEccCeeEecc-cC-CCCCccceeEEcccchhcCChhheEEEEEE
Confidence 4688999999988643 24578888876 32322 23332 22 36899999999988665443 467999999
Q ss_pred EccCCC---CCCceeEEEEEecceec
Q 023810 79 HAGNEE---DTKKLIGSAKLKLKDVI 101 (277)
Q Consensus 79 d~~~~~---~~d~~iG~~~v~L~~l~ 101 (277)
+..... .....||.+.++|-+..
T Consensus 82 ~~~~~~~~k~~~~~iG~~ni~LFd~~ 107 (158)
T cd08398 82 SVKGRKGAKEEHCPLAWGNINLFDYT 107 (158)
T ss_pred EEecccCCCCceEEEEEEEEEEECCC
Confidence 965311 12246999999987643
No 136
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.14 E-value=0.0077 Score=55.48 Aligned_cols=126 Identities=10% Similarity=0.116 Sum_probs=89.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCC-----CCCCceEEEEEEEcc
Q 023810 7 VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGP-----VDDDTTLIIDVVHAG 81 (277)
Q Consensus 7 L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~-----~l~~~~L~v~V~d~~ 81 (277)
+.|.|++++++.... +....+..++| .....|.. +..+..|.||..+...++.. .+++.-|++++|..+
T Consensus 2 ivl~i~egr~F~~~~----~~~~vv~a~~n-g~~l~TDp-v~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~ 75 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP----RHPIVVEAKFN-GESLETDP-VPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD 75 (340)
T ss_pred EEEEEecccCCCCCC----CccEEEEEEeC-CceeeecC-CCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence 578899999887542 33456778886 66677776 67788999999998887664 345566999999977
Q ss_pred CCCCCCceeEEEEEeccee-ccccCCCceeeEEEEeecCC---CCCceEEEEEEEEEecCC
Q 023810 82 NEEDTKKLIGSAKLKLKDV-INDVGLGERASLTLKLKRPS---GRPHGKVDVKVAVRESRY 138 (277)
Q Consensus 82 ~~~~~d~~iG~~~v~L~~l-~~~~~~~~~~~~~~~L~~~s---g~~~G~L~l~v~~~~~~~ 138 (277)
.....++.||.+.++|..+ +...........||.|...+ .+.+=+|.|.+++.+...
T Consensus 76 ~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 76 GSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred CCCCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 3346778899999999887 22221123457899986542 234678899999887643
No 137
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=97.13 E-value=0.0053 Score=51.30 Aligned_cols=92 Identities=13% Similarity=0.126 Sum_probs=61.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE-CCCC----eEEeeecCCCCCCCccceeEEEecCCCCCC-CceEEEEEE
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWV-DPNK----KCSTKVDDEGDTCPYWDETLAIPLPGPVDD-DTTLIIDVV 78 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l-d~~~----~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~-~~~L~v~V~ 78 (277)
..++|+|+++.+|...+ ...+.|+.+.| .+.+ ...|+. .....++.|||.+.|++.-..|- ...|.|.||
T Consensus 8 ~~f~i~i~~~~~~~~~~---~~~~l~V~~~lyhG~~~L~~p~~T~~-~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~ 83 (173)
T cd08693 8 EKFSITLHKISNLNAAE---RTMKVGVQAGLFHGGESLCKTVKTSE-VSGKNDPVWNETLEFDINVCDLPRMARLCFAIY 83 (173)
T ss_pred CCEEEEEEEeccCccCC---CCceEEEEEEEEECCEEccCceEccc-cCCCCccccceeEEcccchhcCChhHeEEEEEE
Confidence 46899999999987522 35677888766 2222 234544 33356799999999987665443 467999999
Q ss_pred EccCCC---------------CCCceeEEEEEeccee
Q 023810 79 HAGNEE---------------DTKKLIGSAKLKLKDV 100 (277)
Q Consensus 79 d~~~~~---------------~~d~~iG~~~v~L~~l 100 (277)
+..... .....||.+.++|-+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 84 EVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred EecccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 854211 1235788888887664
No 138
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=97.11 E-value=0.012 Score=48.04 Aligned_cols=129 Identities=17% Similarity=0.197 Sum_probs=83.5
Q ss_pred ceEEEEEEEEeeCCCCC-CCCCCCCCcEEEEEE-CCCCeEEeeecCCCCCCCccceeEEEecCCCCCC-----------C
Q 023810 4 RYEVEVTITSAKDLKNV-NWRHGPNRPYAVLWV-DPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDD-----------D 70 (277)
Q Consensus 4 ~~~L~V~v~~A~~L~~~-~~~~g~~dpYv~v~l-d~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~-----------~ 70 (277)
++-|+|.|...|-+... +...+..+.-..+.+ -.+++++|+. +..+.+|.|+|.|.|.+...... .
T Consensus 8 ~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~-Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~ 86 (156)
T PF15627_consen 8 RRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKP-VPCACEPDFNEEFLFELPRDSFGAGSTATTLLSIS 86 (156)
T ss_pred ceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCC-cccccCCCCCCcEEEEecccccccccchhHhhcCC
Confidence 46799999998775431 110023333334444 2578899988 88999999999999998764211 2
Q ss_pred ceEEEEEEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecC---CCCCceEEEEEEEEEec
Q 023810 71 TTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP---SGRPHGKVDVKVAVRES 136 (277)
Q Consensus 71 ~~L~v~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~---sg~~~G~L~l~v~~~~~ 136 (277)
..|++.|...+. .....++|+-.+.=..++..... .......|.-. +.-..|.|+|++.+.++
T Consensus 87 ~pihivli~~d~-~~~~~Lv~s~~ldWR~vL~s~~~--~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 87 DPIHIVLIRTDP-SGETTLVGSHFLDWRKVLCSGNG--STSFTVELCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred CceEEEEEEecC-CCceEeeeeceehHHHHhccCCC--ccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence 347777877665 34568888887776666554321 12445555433 22368999999999764
No 139
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=97.10 E-value=0.0023 Score=49.12 Aligned_cols=100 Identities=16% Similarity=0.204 Sum_probs=56.5
Q ss_pred EEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCC-----CCCCceEEEEEEEccCCCCCCceeEEEEEecceecccc
Q 023810 30 YAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGP-----VDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDV 104 (277)
Q Consensus 30 Yv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~-----~l~~~~L~v~V~d~~~~~~~d~~iG~~~v~L~~l~~~~ 104 (277)
||.+.+-.-+.+.|.+ .. +.||.+|.+..|.|..+ -++...|.|+++..-. .+-+.||.++|++..++...
T Consensus 2 Fct~dFydfEtq~Tpv-v~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g--~d~~tla~~~i~l~~ll~~~ 77 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPV-VR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG--SDFETLAAGQISLRPLLESN 77 (107)
T ss_dssp EEEE-STT---EE----EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S--S-EEEEEEEEE--SHHHH--
T ss_pred EEEEEeeceeeecccc-ee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc--CCeEEEEEEEeechhhhcCC
Confidence 4555552356778888 44 88999999988888764 2345679999988653 34578999999999998654
Q ss_pred CCCceeeEEEEeecCCCCCceEEEEEEEEEe
Q 023810 105 GLGERASLTLKLKRPSGRPHGKVDVKVAVRE 135 (277)
Q Consensus 105 ~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~~ 135 (277)
++....+..|...++..-|.|.+.+++..
T Consensus 78 --~~~i~~~~~l~g~~~~~~g~l~y~~rl~~ 106 (107)
T PF11618_consen 78 --GERIHGSATLVGVSGEDFGTLEYWIRLRV 106 (107)
T ss_dssp --S--EEEEEEE-BSSS-TSEEEEEEEEEEE
T ss_pred --CceEEEEEEEeccCCCeEEEEEEEEEecC
Confidence 33456667777777889999999998864
No 140
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=97.08 E-value=0.0077 Score=50.88 Aligned_cols=58 Identities=24% Similarity=0.400 Sum_probs=45.2
Q ss_pred eEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC-CCCceeEEEEEecc
Q 023810 40 KCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE-DTKKLIGSAKLKLK 98 (277)
Q Consensus 40 ~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~-~~d~~iG~~~v~L~ 98 (277)
..+|.| ...+.+|.|||++++.|+...+....|.|+++|+.... ...+.+|-+.+||-
T Consensus 54 e~~S~V-~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 54 EYRSFV-LYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred eEEEEE-EEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 457777 67788999999999999887667788999999965321 12267999999883
No 141
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=97.05 E-value=0.012 Score=49.54 Aligned_cols=58 Identities=24% Similarity=0.329 Sum_probs=36.4
Q ss_pred EEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCCCC--ceeEEEEEecce
Q 023810 41 CSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEEDTK--KLIGSAKLKLKD 99 (277)
Q Consensus 41 ~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~~d--~~iG~~~v~L~~ 99 (277)
..|.| ...+.+|.|+|+|.+.|......+..|.|+++|.......+ ..+|.+.+||-+
T Consensus 61 ~~S~v-~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 61 YYSSV-YYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp EE-----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEE-EecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 45555 56678999999999999876555678999999965322222 689999999977
No 142
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=96.90 E-value=0.012 Score=48.08 Aligned_cols=92 Identities=14% Similarity=0.157 Sum_probs=60.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCcEEEEEE--CCC---CeEEeeecCCCCCCCccceeEEEecCCCCCC-CceEEEEEEE
Q 023810 6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWV--DPN---KKCSTKVDDEGDTCPYWDETLAIPLPGPVDD-DTTLIIDVVH 79 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l--d~~---~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~-~~~L~v~V~d 79 (277)
.++|+|....++...+ . ...+.|+.+.+ +.+ ....|+. .....++.|||.+.|++.-..+. +..|.|.||+
T Consensus 9 ~~~i~i~~~~~~~~~~-~-~~~~l~V~~~l~~g~~~l~~~~~t~~-~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~ 85 (156)
T cd08380 9 NLRIKIHGITNINLLD-S-EDLKLYVRVQLYHGGEPLCPPQSTKK-VPFSTSVTWNEWLTFDILISDLPREARLCLSIYA 85 (156)
T ss_pred CeEEEEEeeccccccC-C-CceeEEEEEEEEECCEEccCceeccC-CcCCCCCcccceeEccchhhcCChhheEEEEEEE
Confidence 5778888877765422 1 35667887776 221 1224433 33346899999999987554343 4679999999
Q ss_pred ccCCC-CCCceeEEEEEeccee
Q 023810 80 AGNEE-DTKKLIGSAKLKLKDV 100 (277)
Q Consensus 80 ~~~~~-~~d~~iG~~~v~L~~l 100 (277)
..... .....||.+.++|-+.
T Consensus 86 ~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 86 VSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred EecCCCCcceEEEEEeEEeEcc
Confidence 66321 1357899999998764
No 143
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=96.87 E-value=0.0091 Score=50.59 Aligned_cols=58 Identities=19% Similarity=0.222 Sum_probs=44.6
Q ss_pred eEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCC---CCceeEEEEEecc
Q 023810 40 KCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEED---TKKLIGSAKLKLK 98 (277)
Q Consensus 40 ~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~---~d~~iG~~~v~L~ 98 (277)
..+|.| ...+.+|.|+|++++.|+...+....|.|+++|+..... ....+|-+.+||-
T Consensus 54 e~~S~V-~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 54 EYKSVI-YYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eEEEEE-EeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 457777 667889999999999998876677889999999653212 2257899999874
No 144
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=96.80 E-value=0.012 Score=48.56 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=51.2
Q ss_pred CCCCcEEEEEE-CCCC----eEEeeecCCCCCCCccceeEEEecCCCCCC-CceEEEEEEEccCCCCCCceeEEEEEecc
Q 023810 25 GPNRPYAVLWV-DPNK----KCSTKVDDEGDTCPYWDETLAIPLPGPVDD-DTTLIIDVVHAGNEEDTKKLIGSAKLKLK 98 (277)
Q Consensus 25 g~~dpYv~v~l-d~~~----~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~-~~~L~v~V~d~~~~~~~d~~iG~~~v~L~ 98 (277)
...+.||.+.| +... -..|+. ..-+....|||.+.|+|.-.++. +..|.|+||+.... .....||.++++|-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~-~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~-~~~~~vg~~~~~lF 105 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSY-KPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGT-GKAVPFGGTTLSLF 105 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccc-cCCCCCcccceeEEcccchhcCChhheEEEEEEEecCC-CCceEEEEEEEeeE
Confidence 45778888877 2222 224444 34456788999999998765443 56799999997642 35568999999886
Q ss_pred e
Q 023810 99 D 99 (277)
Q Consensus 99 ~ 99 (277)
+
T Consensus 106 d 106 (159)
T cd08397 106 N 106 (159)
T ss_pred C
Confidence 6
No 145
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=96.62 E-value=0.033 Score=46.66 Aligned_cols=73 Identities=8% Similarity=-0.019 Sum_probs=46.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE-CCCC---eEEeeecCCCCCCCccceeEEEecCCCCCC-CceEEEEEEE
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWV-DPNK---KCSTKVDDEGDTCPYWDETLAIPLPGPVDD-DTTLIIDVVH 79 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l-d~~~---~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~-~~~L~v~V~d 79 (277)
..++|+|..+..+ +.+.. .....||.+.| .+.. ..+|+. ..-+.++.|||.+.|+|.-.++. ...|.|+||+
T Consensus 10 ~~friki~~~~~~-~~~~~-~~~~l~V~~~Ly~g~~~l~~~~T~~-~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~ 86 (178)
T cd08399 10 RKFRVKILGIDIP-VLPRN-TDLTVFVEANIQHGQQVLCQRRTSP-KPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYC 86 (178)
T ss_pred CCEEEEEEeeccc-CcCCC-CceEEEEEEEEEECCeecccceeec-cCCCCCccccccEECccccccCChhhEEEEEEEE
Confidence 3578888888633 22211 34456777655 2222 224544 34467799999999998765443 4679999998
Q ss_pred c
Q 023810 80 A 80 (277)
Q Consensus 80 ~ 80 (277)
.
T Consensus 87 ~ 87 (178)
T cd08399 87 G 87 (178)
T ss_pred E
Confidence 5
No 146
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=96.47 E-value=0.0062 Score=54.74 Aligned_cols=118 Identities=16% Similarity=0.091 Sum_probs=77.0
Q ss_pred eEEEEEEEEeeCCCCCCC-CCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCC
Q 023810 5 YEVEVTITSAKDLKNVNW-RHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNE 83 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~-~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~ 83 (277)
..|.|.+...++|+-... ..-+.+-||++.+|...+.||.+ ...+.--.|.|+|.++|-. ...|.+-||.+..-
T Consensus 51 GiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~v-rs~~~~f~w~e~F~~Dvv~----~~vl~~lvySW~pq 125 (442)
T KOG1452|consen 51 GILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRV-RSSGPGFAWAEDFKHDVVN----IEVLHYLVYSWPPQ 125 (442)
T ss_pred ceEEEEEecccccccChhccCceeeeeeeeeecccCcccccc-ccCCCCccchhhceeeccc----ceeeeEEEeecCch
Confidence 467888899999975322 22356789999998778888988 6666777899999999864 35688888887753
Q ss_pred CCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEEEec
Q 023810 84 EDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVRES 136 (277)
Q Consensus 84 ~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~~~ 136 (277)
.+.++.=.-.+.+..+....+. +.+.+.| +++|.+-|++.+.+.
T Consensus 126 -~RHKLC~~g~l~~~~v~rqspd---~~~Al~l-----ePrgq~~~r~~~~Dp 169 (442)
T KOG1452|consen 126 -RRHKLCHLGLLEAFVVDRQSPD---RVVALYL-----EPRGQPPLRLPLADP 169 (442)
T ss_pred -hhccccccchhhhhhhhhcCCc---ceeeeec-----ccCCCCceecccCCh
Confidence 3445433333444434333221 2333433 346777777777654
No 147
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=96.33 E-value=0.026 Score=46.97 Aligned_cols=93 Identities=18% Similarity=0.182 Sum_probs=59.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCcEEEEEE-CCCCe----EEeeec---CCCCCCCccceeEEEecCCCCCC-CceEEEE
Q 023810 6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWV-DPNKK----CSTKVD---DEGDTCPYWDETLAIPLPGPVDD-DTTLIID 76 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l-d~~~~----~~T~v~---~~~~~nP~WnE~f~f~v~~~~l~-~~~L~v~ 76 (277)
.+.|+|.++.++.... .....+-|+.+.| .+.+. ..|+.. ..-.....|||.+.|++.-..+- +..|.|.
T Consensus 9 ~~~i~v~~~h~~~~~~-~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 9 LLSVTVSSLHRIPPTW-VQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred cEEEEEEEeecCChHH-hhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 5788999998887543 2245778888877 22222 234321 11123577999999988654443 4679999
Q ss_pred EEEccCCCC--------CCceeEEEEEecce
Q 023810 77 VVHAGNEED--------TKKLIGSAKLKLKD 99 (277)
Q Consensus 77 V~d~~~~~~--------~d~~iG~~~v~L~~ 99 (277)
||+...... .+..||.+.++|-+
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEc
Confidence 999653210 34688888888766
No 148
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=96.22 E-value=0.0013 Score=66.73 Aligned_cols=122 Identities=16% Similarity=0.151 Sum_probs=84.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCC------CCCC-ceEEEEEE
Q 023810 6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGP------VDDD-TTLIIDVV 78 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~------~l~~-~~L~v~V~ 78 (277)
.+++.|.+|+.|...+.. +.+|||+.+.+ -++.+.|-+ +.+++||.||+++.|.--+. -+++ -.+.|+||
T Consensus 207 ~lR~yiyQar~L~a~dk~-~~sdp~a~v~f-~~qs~~T~~-v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~y 283 (1105)
T KOG1326|consen 207 PLRSYIYQARALGAPDKD-DESDPDAAVEF-CGQSKETEV-VPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVY 283 (1105)
T ss_pred hhHHHHHHHHhhcCCCcc-cCCCchhhhhc-ccccceeEe-ecCcCCCCccceeeccceeecCccchhhcCCCeEEEEee
Confidence 456667788888777654 78899998887 366677888 88999999999998862221 1111 34789999
Q ss_pred EccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEEEecC
Q 023810 79 HAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVRESR 137 (277)
Q Consensus 79 d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~~~~ 137 (277)
|.++ ...++|+|+..+...-... .+ ...|+++.+ ++...|.+.++..+..-+
T Consensus 284 d~dr-~g~~ef~gr~~~~p~V~~~-~p----~lkw~p~~r-g~~l~gd~l~a~eliq~~ 335 (1105)
T KOG1326|consen 284 DLDR-SGINEFKGRKKQRPYVMVQ-CP----ALKWVPTMR-GAFLDGDVLIAAELIQIG 335 (1105)
T ss_pred hhhh-hchHHhhcccccceEEEec-CC----ccceEEeec-ccccccchhHHHHHHhhc
Confidence 9886 4688999998776554433 22 245666644 556678888877665543
No 149
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=95.79 E-value=0.036 Score=53.52 Aligned_cols=87 Identities=21% Similarity=0.336 Sum_probs=61.2
Q ss_pred EEeeCCCCCCCCCCCCCcEEEEEE---CCC--CeEEeeecCCCCCCCccceeEEEecCCC--CCCCceEEEEEEEccCCC
Q 023810 12 TSAKDLKNVNWRHGPNRPYAVLWV---DPN--KKCSTKVDDEGDTCPYWDETLAIPLPGP--VDDDTTLIIDVVHAGNEE 84 (277)
Q Consensus 12 ~~A~~L~~~~~~~g~~dpYv~v~l---d~~--~~~~T~v~~~~~~nP~WnE~f~f~v~~~--~l~~~~L~v~V~d~~~~~ 84 (277)
+.|+.|.+++++ +++|+|..+.- +.. ...+|.+ +++++||.|.+. .+.+..- .-.++.+.|++|+.+. .
T Consensus 143 ~~~~~ld~kd~f-~ksd~~l~~~~~~~d~s~~~~~~tEv-~~n~l~p~w~~~-~i~~~~l~~~~~~~~~~i~~~d~~~-~ 218 (529)
T KOG1327|consen 143 FRAKNLDPKDFF-SKSDPYLEFYKRVDDGSTQMLYRTEV-VKNTLNPQWAPF-SISLQSLCSKDGNRPIQIECYDYDS-N 218 (529)
T ss_pred eeeeecCccccc-ccCCcceEEEEecCCCceeeccccce-eccCCCCccccc-ccchhhhcccCCCCceEEEEeccCC-C
Confidence 457888888876 89999987654 222 2358888 788999999753 3332221 1124678899999886 3
Q ss_pred CCCceeEEEEEecceecc
Q 023810 85 DTKKLIGSAKLKLKDVIN 102 (277)
Q Consensus 85 ~~d~~iG~~~v~L~~l~~ 102 (277)
..+++||++...+.++..
T Consensus 219 ~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 219 GKHDLIGKFQTTLSELQE 236 (529)
T ss_pred CCcCceeEecccHHHhcc
Confidence 566899999998888753
No 150
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=95.73 E-value=0.13 Score=43.00 Aligned_cols=56 Identities=21% Similarity=0.376 Sum_probs=41.3
Q ss_pred EeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCC----CCCCceeEEEEEecce
Q 023810 42 STKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNE----EDTKKLIGSAKLKLKD 99 (277)
Q Consensus 42 ~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~----~~~d~~iG~~~v~L~~ 99 (277)
+|.+ ..+ .+|.|+|+|.+.|+........|.|+++|.... ......+|-+.+||-+
T Consensus 56 ~sv~-~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVV-YYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEE-EcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 4444 444 899999999999976433567899999996531 1345789999999865
No 151
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=95.45 E-value=0.056 Score=47.61 Aligned_cols=24 Identities=38% Similarity=0.718 Sum_probs=12.3
Q ss_pred CchhHHHHHHHHHHHhHhhhhhhhh
Q 023810 228 GMGTGLAVGAVGGILGGLALAEGVD 252 (277)
Q Consensus 228 g~g~g~~~g~~~g~~gg~~~~~~~~ 252 (277)
||. +-|+..+|||+||++|..++.
T Consensus 136 gFL-g~A~~TAAGVAGG~lL~n~i~ 159 (247)
T PF09849_consen 136 GFL-GGAAQTAAGVAGGMLLANGIE 159 (247)
T ss_pred cHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 554 444455555555555554444
No 152
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=95.18 E-value=0.12 Score=41.59 Aligned_cols=57 Identities=25% Similarity=0.304 Sum_probs=38.7
Q ss_pred EeeecCCCC-CCCccceeEEEecCCCCC-CCceEEEEEEEccCCCCCC----ceeEEEEEeccee
Q 023810 42 STKVDDEGD-TCPYWDETLAIPLPGPVD-DDTTLIIDVVHAGNEEDTK----KLIGSAKLKLKDV 100 (277)
Q Consensus 42 ~T~v~~~~~-~nP~WnE~f~f~v~~~~l-~~~~L~v~V~d~~~~~~~d----~~iG~~~v~L~~l 100 (277)
+|+. ...+ .++.|||.+.|++.-..+ .+..|.|.||..... ... ..||.+.++|-+.
T Consensus 23 ~T~~-~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~-~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSY-VPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSK-KKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S--EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECS-TTT--EEEEEEEEEEESB-T
T ss_pred eccc-cccccccceEeeEEEeecChHHCChhHeEEEEEEEecCC-CccccceeEEEEEEEEeECC
Confidence 4544 2333 699999999998654433 357799999997642 222 6899999998774
No 153
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=95.04 E-value=0.09 Score=44.12 Aligned_cols=59 Identities=22% Similarity=0.345 Sum_probs=43.0
Q ss_pred eEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCC-----CCceeEEEEEecce
Q 023810 40 KCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEED-----TKKLIGSAKLKLKD 99 (277)
Q Consensus 40 ~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~-----~d~~iG~~~v~L~~ 99 (277)
...|.| ...+.+|.|+|+|.+.|+....+...|.|+++|.+.... ....+|-+.+||-+
T Consensus 55 ~~~S~V-~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 55 EAYTAV-TYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eEEEEE-EEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 456777 567889999999999998754445679999999542111 23579999998853
No 154
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=94.90 E-value=0.11 Score=43.75 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=42.9
Q ss_pred eEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC--------CCCceeEEEEEecce
Q 023810 40 KCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE--------DTKKLIGSAKLKLKD 99 (277)
Q Consensus 40 ~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~--------~~d~~iG~~~v~L~~ 99 (277)
...|.| ...+.+|.|+|++.+.|.........|.|+++|.+... .....+|-+.+||-.
T Consensus 57 ~~~s~V-~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 57 SAYAAV-LHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEE-EEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 356677 55679999999999999875444567999999965211 123578999998854
No 155
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=94.21 E-value=0.35 Score=36.47 Aligned_cols=73 Identities=18% Similarity=0.139 Sum_probs=45.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCcEEEEEE-CCCC----eEEeeecCCCCCCCccceeEEEecCCCCCC-CceEEEEEEEc
Q 023810 7 VEVTITSAKDLKNVNWRHGPNRPYAVLWV-DPNK----KCSTKVDDEGDTCPYWDETLAIPLPGPVDD-DTTLIIDVVHA 80 (277)
Q Consensus 7 L~V~v~~A~~L~~~~~~~g~~dpYv~v~l-d~~~----~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~-~~~L~v~V~d~ 80 (277)
+.+++...+++...... ...+.|+.+.+ .+.. ...|+. ..-..++.|||.+.|++.-.++. +..|.|.||+.
T Consensus 13 ~~~~~~~~~~~~l~~~~-~~~~l~v~~~l~~g~~~l~~pv~t~~-~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~ 90 (100)
T smart00142 13 LVITIALIHGIPLNWSR-DYSDLYVEIQLYHGGKLLCLPVSTSY-KPFFPSVKWNEWLTFPIQISDLPREARLCITIYEV 90 (100)
T ss_pred eEEEEEEeeCCCccccc-CcceEEEEEEEEECCEEccCcEEecc-cCCCCCcccceeEEccCchhcCChhhEEEEEEEEe
Confidence 55666666666543211 22478888877 2222 224443 34455689999999987665443 46799999985
Q ss_pred c
Q 023810 81 G 81 (277)
Q Consensus 81 ~ 81 (277)
.
T Consensus 91 ~ 91 (100)
T smart00142 91 K 91 (100)
T ss_pred e
Confidence 4
No 156
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=92.54 E-value=0.51 Score=39.11 Aligned_cols=71 Identities=10% Similarity=0.163 Sum_probs=52.0
Q ss_pred CCCcEEEEEECCCCeEEeeec-CCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCCCCceeEEEEEecceec
Q 023810 26 PNRPYAVLWVDPNKKCSTKVD-DEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVI 101 (277)
Q Consensus 26 ~~dpYv~v~ld~~~~~~T~v~-~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~~d~~iG~~~v~L~~l~ 101 (277)
+..-|+++.++.+...+|+.. +...-.-.|||.|.+.|.. + -+.|.|+||.... ..+.+|+++.|||-...
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~--~-Pesi~l~i~E~~~--~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITR--W-PESIKLEIYEKSG--LSDRLLAEVFVPVPGST 107 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEec--C-CCEEEEEEEEccC--ccceEEEEEEeeCCCCc
Confidence 456789999976666677652 2233345678999999865 2 3679999999885 57889999999986543
No 157
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=89.98 E-value=0.65 Score=45.06 Aligned_cols=60 Identities=13% Similarity=0.236 Sum_probs=44.9
Q ss_pred EEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCC---CCCCceeEEEEEecceeccc
Q 023810 41 CSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNE---EDTKKLIGSAKLKLKDVIND 103 (277)
Q Consensus 41 ~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~---~~~d~~iG~~~v~L~~l~~~ 103 (277)
.||.+ +.+.+||.|.++|.+...-+ ....|.|++++.+.. ....+|+|++...|..+...
T Consensus 43 ~rte~-i~~~~~p~f~~~~~l~y~fE--~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~ 105 (529)
T KOG1327|consen 43 GRTEV-IRNVLNPFFTKKFLLQYRFE--KVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSS 105 (529)
T ss_pred cceee-eeccCCccceeeechhheee--eeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhh
Confidence 37777 78899999999988765431 235688999886532 35678999999998887755
No 158
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=86.33 E-value=6.4 Score=37.91 Aligned_cols=10 Identities=30% Similarity=0.634 Sum_probs=7.0
Q ss_pred ccceeEEEec
Q 023810 54 YWDETLAIPL 63 (277)
Q Consensus 54 ~WnE~f~f~v 63 (277)
.|+|..-|++
T Consensus 249 gwd~~~gf~~ 258 (569)
T KOG3671|consen 249 GWDEQVGFDS 258 (569)
T ss_pred CCCcCCCccc
Confidence 4888776665
No 159
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=85.36 E-value=3.7 Score=31.50 Aligned_cols=66 Identities=21% Similarity=0.278 Sum_probs=44.5
Q ss_pred CceEEEEEEEccCC--CCCCceeEEEEEecceecccc----------CCCceeeEEEEeecCCCCCceEEEEEEEEEe
Q 023810 70 DTTLIIDVVHAGNE--EDTKKLIGSAKLKLKDVINDV----------GLGERASLTLKLKRPSGRPHGKVDVKVAVRE 135 (277)
Q Consensus 70 ~~~L~v~V~d~~~~--~~~d~~iG~~~v~L~~l~~~~----------~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~~ 135 (277)
...|.+.+++...- .....+||.+.|++.+....- .........|.|.++.+..-|+|.|.+++.-
T Consensus 28 ~~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~~~~G~I~l~iRLsc 105 (112)
T PF14924_consen 28 SFPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENGNPVGEISLYIRLSC 105 (112)
T ss_pred CCceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCCceeeeEEEEEEEec
Confidence 45577777664321 245578999999997755221 1112346778898888888999999998854
No 160
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=85.29 E-value=8.5 Score=35.57 Aligned_cols=110 Identities=17% Similarity=0.145 Sum_probs=62.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccc--eeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810 7 VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWD--ETLAIPLPGPVDDDTTLIIDVVHAGNEE 84 (277)
Q Consensus 7 L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~Wn--E~f~f~v~~~~l~~~~L~v~V~d~~~~~ 84 (277)
|.|.|.+-.++. -....|+.+..+ +...+|.. +.-+..-+-+ +...+.+.. -+.+|+|.+|-..-
T Consensus 60 LLVeI~EI~~i~------k~khiyIef~~G-r~d~TT~~-IpTsKK~RI~IqqRV~IkIRQ---cDnTLkI~lfKKkL-- 126 (508)
T PTZ00447 60 LLVKINEIFNIN------KYKHIYIIFSTD-KYDFTTDE-IPTNKKNRIHIDQRVDIKIRQ---CDETLRVDLFTTKL-- 126 (508)
T ss_pred EEEEehhhhccc------cceeEEEEEEcC-ceEEEccc-cccCcCceEEEeeeeeeeeee---cCceEEEEEEeccc--
Confidence 445555544332 234568888885 66666643 2212222223 444444432 36789999998873
Q ss_pred CCCceeEEEEEecc-eeccccCCCceeeEEEEeecCCCCCceEEEEEEEE
Q 023810 85 DTKKLIGSAKLKLK-DVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAV 133 (277)
Q Consensus 85 ~~d~~iG~~~v~L~-~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~ 133 (277)
....-||.+.|.+. +++++.- -...||.+ .+.|...+.|.|++.=
T Consensus 127 vkk~hIgdI~InIn~dIIdk~F---PKnkWy~c-~kDGq~~cRIqLSFhK 172 (508)
T PTZ00447 127 TKKVHIGQIKIDINASVISKSF---PKNEWFVC-FKDGQEICKVQMSFYK 172 (508)
T ss_pred cceeEEEEEEecccHHHHhccC---CccceEEE-ecCCceeeeEEEEehh
Confidence 45667999999885 4444321 12456666 5577777777766543
No 161
>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms]
Probab=84.06 E-value=9.6 Score=33.31 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=14.2
Q ss_pred CCCCCceEEEEEEEEEec
Q 023810 119 PSGRPHGKVDVKVAVRES 136 (277)
Q Consensus 119 ~sg~~~G~L~l~v~~~~~ 136 (277)
..|...|+.++++.|.+-
T Consensus 102 pgGg~~g~as~Kl~F~~G 119 (261)
T KOG3294|consen 102 PGGGWEGEASFKLTFNEG 119 (261)
T ss_pred CCCCccceeEEEEEecCC
Confidence 356678999999999774
No 162
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=83.87 E-value=18 Score=29.79 Aligned_cols=84 Identities=13% Similarity=0.184 Sum_probs=53.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCcEEEEEEC---------CCC-eEEeeecCC----CCCCCccceeEEEecCCCCCCC-
Q 023810 6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVD---------PNK-KCSTKVDDE----GDTCPYWDETLAIPLPGPVDDD- 70 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld---------~~~-~~~T~v~~~----~~~nP~WnE~f~f~v~~~~l~~- 70 (277)
.+.-.|.+|++.. ..+.||+..++ +.. ...|.++.. ++..-.||.-|.+.+..+....
T Consensus 3 ~v~G~I~~a~~f~-------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gw 75 (168)
T PF07162_consen 3 HVIGEIESAEGFE-------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGW 75 (168)
T ss_pred EEEEEEEEEECCC-------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCC
Confidence 3555678887653 33678887761 223 345655332 2445779988877765532222
Q ss_pred ceEEEEEEEccCCCCCCceeEEEEEec
Q 023810 71 TTLIIDVVHAGNEEDTKKLIGSAKLKL 97 (277)
Q Consensus 71 ~~L~v~V~d~~~~~~~d~~iG~~~v~L 97 (277)
-+|.|+||..+. .+++.+.|-..+.|
T Consensus 76 P~L~l~V~~~D~-~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 76 PQLVLQVYSLDS-WGRDRVEGYGFCHL 101 (168)
T ss_pred ceEEEEEEEEcc-cCCeEEeEEeEEEe
Confidence 479999999986 57888898765544
No 163
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=81.00 E-value=5.3 Score=35.30 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=23.6
Q ss_pred cCCCchhHHHHHHHHHHHhHhhhhhhhhhhh
Q 023810 225 KFGGMGTGLAVGAVGGILGGLALAEGVDALE 255 (277)
Q Consensus 225 ~~~g~g~g~~~g~~~g~~gg~~~~~~~~~~~ 255 (277)
=++++ +..|+||++|+|.+-+|..+++++.
T Consensus 137 FLg~A-~~TAAGVAGG~lL~n~i~~lF~~~~ 166 (247)
T PF09849_consen 137 FLGGA-AQTAAGVAGGMLLANGIESLFGGHS 166 (247)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 34344 4889999999999999999987654
No 164
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=79.82 E-value=30 Score=32.85 Aligned_cols=64 Identities=16% Similarity=0.187 Sum_probs=38.0
Q ss_pred ceEEEEEEEccC-----CCCCCceeEEEEEecceeccccCCC-ceeeEEEEeecCC----CCCceEEEEEEEEEe
Q 023810 71 TTLIIDVVHAGN-----EEDTKKLIGSAKLKLKDVINDVGLG-ERASLTLKLKRPS----GRPHGKVDVKVAVRE 135 (277)
Q Consensus 71 ~~L~v~V~d~~~-----~~~~d~~iG~~~v~L~~l~~~~~~~-~~~~~~~~L~~~s----g~~~G~L~l~v~~~~ 135 (277)
..|+|.||.-.. +....++||.++|+|. +......- ..+..|+.|-+.. .....+|+|.|+...
T Consensus 95 ~~L~i~VY~Gr~G~tCGv~~~~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~Ep 168 (460)
T PF06219_consen 95 PCLEISVYTGRRGSTCGVGNSGKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEP 168 (460)
T ss_pred ceEEEEEEECCCCCcccccccceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccC
Confidence 468999998321 1146689999999986 33222111 1235677774332 124677887777643
No 165
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=75.24 E-value=4.1 Score=28.76 Aligned_cols=17 Identities=35% Similarity=0.634 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHhHhhh
Q 023810 231 TGLAVGAVGGILGGLAL 247 (277)
Q Consensus 231 ~g~~~g~~~g~~gg~~~ 247 (277)
.|+++|+++|++.|+++
T Consensus 3 ~g~l~Ga~~Ga~~glL~ 19 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLF 19 (74)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 35666666666666653
No 166
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=74.34 E-value=33 Score=27.60 Aligned_cols=90 Identities=10% Similarity=0.072 Sum_probs=59.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCC-C---------CCCCceEEE
Q 023810 6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPG-P---------VDDDTTLII 75 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~-~---------~l~~~~L~v 75 (277)
.|+|.-+.|-+.... .+.|.|..+.+- ....+|+. ...----.++|+|+|.-.- + .|++..+.|
T Consensus 3 eL~i~aVTCPGv~L~----~~~~vyL~v~~l-g~~~~T~~-~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~i 76 (140)
T PF14909_consen 3 ELEIHAVTCPGVWLC----DKGDVYLSVCIL-GQYKRTRC-LPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYI 76 (140)
T ss_pred EEEEEEEecCCeEeC----CCCCEEEEEEEc-ccEeeccc-CCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEE
Confidence 577777777665433 456889999984 55567765 3322223358999986211 0 356778999
Q ss_pred EEEEccCCCCCCceeEEEEEecceeccc
Q 023810 76 DVVHAGNEEDTKKLIGSAKLKLKDVIND 103 (277)
Q Consensus 76 ~V~d~~~~~~~d~~iG~~~v~L~~l~~~ 103 (277)
++++.... -.+.|+...-.++|++--
T Consensus 77 ELiQl~~~--~g~iLA~ye~n~rDfLfP 102 (140)
T PF14909_consen 77 ELIQLVPP--AGEILAYYEENTRDFLFP 102 (140)
T ss_pred EEEEEeCC--CCcEEEEEeccccceEcC
Confidence 99997653 257788888888887643
No 167
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=72.94 E-value=6 Score=30.80 Aligned_cols=14 Identities=36% Similarity=0.503 Sum_probs=5.4
Q ss_pred HHHHHHHHhHhhhh
Q 023810 235 VGAVGGILGGLALA 248 (277)
Q Consensus 235 ~g~~~g~~gg~~~~ 248 (277)
+|+++|++.|.+.+
T Consensus 79 ~GAa~Ga~~G~~~g 92 (118)
T PF13436_consen 79 IGAAAGAAVGAAAG 92 (118)
T ss_pred HHHHHHHHHHHHhh
Confidence 33333333344433
No 168
>smart00157 PRP Major prion protein. The prion protein is a major component of scrapie-associated fibrils in Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler syndrome and bovine spongiform encephalopathy.
Probab=72.75 E-value=16 Score=30.80 Aligned_cols=46 Identities=24% Similarity=0.415 Sum_probs=28.1
Q ss_pred ccccccccCCCch-hHHHHHHHHHHHhHhhhhhhh----hhhhhhhhHHHH
Q 023810 218 VEEKKKSKFGGMG-TGLAVGAVGGILGGLALAEGV----DALEDHIADEAA 263 (277)
Q Consensus 218 ~~~~~~~~~~g~g-~g~~~g~~~g~~gg~~~~~~~----~~~~~~~~~~~~ 263 (277)
++++.+++|++++ .|+++|+++|.+.|-++.... +..||+..++.+
T Consensus 81 KP~~~~k~~~~aAgagAv~g~~~GY~lG~~m~rp~~~F~np~EeryYne~m 131 (217)
T smart00157 81 KPKTNMKHVAGAAAAGAVVGGLGGYMLGSAMSRPLIHFGNDYEDRYYRENM 131 (217)
T ss_pred CCCcchHHHHHhhhcchhhhhccccccccccCCCccccCChHHHHHHHHHH
Confidence 4666666677654 478888888877777654443 344454444443
No 169
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=72.12 E-value=12 Score=30.38 Aligned_cols=94 Identities=18% Similarity=0.192 Sum_probs=49.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCcEEEEEE-CCC-----CeEEeeecCCC-CCCCccceeEEEecCCCCC-CCceEEEEE
Q 023810 6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWV-DPN-----KKCSTKVDDEG-DTCPYWDETLAIPLPGPVD-DDTTLIIDV 77 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l-d~~-----~~~~T~v~~~~-~~nP~WnE~f~f~v~~~~l-~~~~L~v~V 77 (277)
.|.|.|.+.. |++.. ...|||+.|++ |.+ ..+.|.+.... +..-.||....+....+.+ ++..+.||+
T Consensus 14 ~l~v~Iekig-lkda~---~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai~fE~ 89 (147)
T PF14186_consen 14 YLSVFIEKIG-LKDAS---QYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAIFFEF 89 (147)
T ss_dssp EEEEEEEEEE--TTGG---G-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EEEEEE
T ss_pred eEEEEEEEEE-ECChH---HccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEEEEEE
Confidence 4666665554 66533 35689999998 433 23567663222 3334557666665443323 356788999
Q ss_pred EEccCCCCCCceeEEEEEecceeccc
Q 023810 78 VHAGNEEDTKKLIGSAKLKLKDVIND 103 (277)
Q Consensus 78 ~d~~~~~~~d~~iG~~~v~L~~l~~~ 103 (277)
.|........+..+.+-+.+++|...
T Consensus 90 kH~K~kk~k~S~kcw~fme~dei~~g 115 (147)
T PF14186_consen 90 KHYKPKKKKTSTKCWAFMELDEIKPG 115 (147)
T ss_dssp EEEETTTTCEEEEEEEEEEGGG--SE
T ss_pred EeeeccceeeeeeEEEEEEhhhccCC
Confidence 99764333445578888988887654
No 170
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=70.76 E-value=19 Score=37.35 Aligned_cols=71 Identities=11% Similarity=0.067 Sum_probs=41.1
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEE--E-CCCCe----EEeeecCCCCCCCccceeEEEecCCCCCC-CceEEEE
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLW--V-DPNKK----CSTKVDDEGDTCPYWDETLAIPLPGPVDD-DTTLIID 76 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~--l-d~~~~----~~T~v~~~~~~nP~WnE~f~f~v~~~~l~-~~~L~v~ 76 (277)
+.++|+++.+..+... .+.|.+|.|. + .+... .+|.- ..+..++.||+.+.|+|.-.++. ...|.|.
T Consensus 343 ~~frI~l~~is~~n~~----~t~~~kV~V~~~lyhG~e~Lc~~~sTs~-v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~ 417 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNLP----ETVDLKVFVEAGLYHGTEVLCKTRSTSE-VPGCSFPLWNEWLEFDIYIKDLPRMARLCLA 417 (1076)
T ss_pred CceEEEEeeccccCCC----cccceEEEEEEEEEECCeehhcccccCC-CCCccchhccceeEeeeecCCCChhhhheee
Confidence 3577888887665432 2334444443 3 22222 22322 45578999999999987654343 2457777
Q ss_pred EEEc
Q 023810 77 VVHA 80 (277)
Q Consensus 77 V~d~ 80 (277)
||.-
T Consensus 418 i~~v 421 (1076)
T KOG0904|consen 418 IYAV 421 (1076)
T ss_pred eeEe
Confidence 7763
No 171
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.86 E-value=4 Score=34.84 Aligned_cols=24 Identities=33% Similarity=0.638 Sum_probs=13.9
Q ss_pred CchhHHHHHHHHHHHhHhhhhhhhh
Q 023810 228 GMGTGLAVGAVGGILGGLALAEGVD 252 (277)
Q Consensus 228 g~g~g~~~g~~~g~~gg~~~~~~~~ 252 (277)
+|. |-++..+||++|||+|..++.
T Consensus 137 sFL-G~AlqTAAGVAGGMlL~n~L~ 160 (233)
T COG3416 137 SFL-GGALQTAAGVAGGMLLANGLE 160 (233)
T ss_pred hhH-HHHHHHHhhhhhhHHHHHHHH
Confidence 554 455556666666666655543
No 172
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=69.19 E-value=9 Score=39.52 Aligned_cols=79 Identities=16% Similarity=0.107 Sum_probs=55.9
Q ss_pred CCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCCCCceeEEEEEecceeccccCC
Q 023810 27 NRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGL 106 (277)
Q Consensus 27 ~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~ 106 (277)
++.|+.+.+....-.+|....+.-.+|.|.+.|.+.+.. ....+++.|.+.+. .+...++|.+.+++..+.++...
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h---~~g~v~~~~~~~~~-~G~s~~w~~v~~s~~~~~~~~~~ 213 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAH---KAGYVIFRVKGARV-PGWSKRWGRVKISFLQYCSGHRI 213 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccc---cccEEEEeecCCcc-ccceeEEEEeccchhhhhccccc
Confidence 478888888645556776633333789999999887765 23567888877774 34578899999999888876444
Q ss_pred Cce
Q 023810 107 GER 109 (277)
Q Consensus 107 ~~~ 109 (277)
+.+
T Consensus 214 ~~~ 216 (887)
T KOG1329|consen 214 GGW 216 (887)
T ss_pred cce
Confidence 433
No 173
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=67.18 E-value=8.3 Score=30.00 Aligned_cols=14 Identities=43% Similarity=0.477 Sum_probs=5.1
Q ss_pred HHHHHHHHHHhHhh
Q 023810 233 LAVGAVGGILGGLA 246 (277)
Q Consensus 233 ~~~g~~~g~~gg~~ 246 (277)
+++|+++|++.|..
T Consensus 81 Aa~Ga~~G~~~g~~ 94 (118)
T PF13436_consen 81 AAAGAAVGAAAGAA 94 (118)
T ss_pred HHHHHHHHHHhhhh
Confidence 33333333333333
No 174
>COG4395 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.63 E-value=4.6 Score=36.19 Aligned_cols=28 Identities=39% Similarity=0.431 Sum_probs=17.1
Q ss_pred ccCCCchhHHHHHHHHHHHhHhhhhhhhh
Q 023810 224 SKFGGMGTGLAVGAVGGILGGLALAEGVD 252 (277)
Q Consensus 224 ~~~~g~g~g~~~g~~~g~~gg~~~~~~~~ 252 (277)
+.++||+.|+++|++.| |.+++++.++.
T Consensus 27 ~~~~~~~g~l~ggl~~g-l~~~~~~~~f~ 54 (281)
T COG4395 27 SFFSGMLGGLAGGLLMG-LSGMFFGGLFF 54 (281)
T ss_pred chhhhhhhHHHHHHHHh-HHHHHHHHHHH
Confidence 34557766777777777 66555554443
No 175
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=66.07 E-value=18 Score=25.65 Aligned_cols=39 Identities=21% Similarity=0.147 Sum_probs=26.5
Q ss_pred ceeccccCCCceeeEEEEeecC---CCCCceEEEEEEEEEecC
Q 023810 98 KDVINDVGLGERASLTLKLKRP---SGRPHGKVDVKVAVRESR 137 (277)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~L~~~---sg~~~G~L~l~v~~~~~~ 137 (277)
..+.++.. .....+|..|..+ +...+|.|+|+|++...+
T Consensus 4 gtVY~qP~-H~~~~KW~~L~dP~D~~~G~kGYlKv~i~Vlg~G 45 (72)
T PF08151_consen 4 GTVYNQPD-HQFYRKWALLTDPDDTSAGVKGYLKVDISVLGPG 45 (72)
T ss_pred eeeecCCC-CeeEeceEEecCCCCCccCCceEEEEEEEEEcCC
Confidence 33444432 3445678888665 456799999999998874
No 176
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=65.83 E-value=39 Score=33.85 Aligned_cols=83 Identities=18% Similarity=0.249 Sum_probs=54.1
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccC--
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGN-- 82 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~-- 82 (277)
..|+|.|.+..+|+.+. -..-.||.+.+++ .+..|.- .....|.|...=.|..+.. .-.+.|.+|.+..
T Consensus 341 ~smevvvmevqglksva---pnrivyctmeveg-eklqtdq--aeaskp~wgtqgdfstthp---lpvvkvklftestgv 411 (1218)
T KOG3543|consen 341 LSMEVVVMEVQGLKSVA---PNRIVYCTMEVEG-EKLQTDQ--AEASKPKWGTQGDFSTTHP---LPVVKVKLFTESTGV 411 (1218)
T ss_pred eeeeEEEeeeccccccC---CCeeEEEEEEecc-cccccch--hhhcCCCCCcCCCcccCCC---CceeEEEEEeeccee
Confidence 35788899999998754 2334799999974 5656643 3456899997766665541 2346677776543
Q ss_pred CCCCCceeEEEEEe
Q 023810 83 EEDTKKLIGSAKLK 96 (277)
Q Consensus 83 ~~~~d~~iG~~~v~ 96 (277)
+.-.|+-||++.+.
T Consensus 412 laledkelgrvil~ 425 (1218)
T KOG3543|consen 412 LALEDKELGRVILQ 425 (1218)
T ss_pred EEeechhhCeEEEe
Confidence 12355668887764
No 177
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.46 E-value=3.6 Score=35.11 Aligned_cols=29 Identities=28% Similarity=0.277 Sum_probs=22.6
Q ss_pred cCCCchhHHHHHHHHHHHhHhhhhhhhhh
Q 023810 225 KFGGMGTGLAVGAVGGILGGLALAEGVDA 253 (277)
Q Consensus 225 ~~~g~g~g~~~g~~~g~~gg~~~~~~~~~ 253 (277)
..-|-....|+||++|++.+-+|..+..+
T Consensus 137 sFLG~AlqTAAGVAGGMlL~n~L~~mF~~ 165 (233)
T COG3416 137 SFLGGALQTAAGVAGGMLLANGLEGMFRH 165 (233)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhcc
Confidence 34355558889999999999999888873
No 178
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=62.25 E-value=9.9 Score=28.80 Aligned_cols=15 Identities=47% Similarity=0.592 Sum_probs=6.1
Q ss_pred HHHHHHHHHHhHhhh
Q 023810 233 LAVGAVGGILGGLAL 247 (277)
Q Consensus 233 ~~~g~~~g~~gg~~~ 247 (277)
+++|+++|+|.|.+.
T Consensus 22 ~~~GA~~Gal~G~l~ 36 (102)
T PF06897_consen 22 AAVGAAAGALAGALS 36 (102)
T ss_pred HHHHHHHHHHHhHHh
Confidence 333444444444433
No 179
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.95 E-value=11 Score=37.80 Aligned_cols=47 Identities=17% Similarity=0.294 Sum_probs=35.0
Q ss_pred CCCccceeEEEecCCCCCC-CceEEEEEEEccCCCCCCceeEEEEEecc
Q 023810 51 TCPYWDETLAIPLPGPVDD-DTTLIIDVVHAGNEEDTKKLIGSAKLKLK 98 (277)
Q Consensus 51 ~nP~WnE~f~f~v~~~~l~-~~~L~v~V~d~~~~~~~d~~iG~~~v~L~ 98 (277)
+.-.|||-+++.+.-.++. +..|.|+||+.+. .....|+|.+++.|.
T Consensus 75 ~~~~wnewLtlpvky~dLt~~a~l~itiW~~n~-~~~~~~vg~~t~~lf 122 (843)
T KOG0906|consen 75 KRINWNEWLTLPVKYSDLTRNAQLAITIWDVNG-PKKAVFVGGTTVSLF 122 (843)
T ss_pred CccchhhhhccccccccccccceEEEEEEecCC-CceeeeccceEEEee
Confidence 3345999999998765443 5679999999764 356778998887653
No 180
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.46 E-value=11 Score=29.77 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhHhhhhhhhh
Q 023810 232 GLAVGAVGGILGGLALAEGVD 252 (277)
Q Consensus 232 g~~~g~~~g~~gg~~~~~~~~ 252 (277)
-+++|+++|++.|++|.....
T Consensus 10 ~a~igLvvGi~IG~li~Rlt~ 30 (138)
T COG3105 10 YALIGLVVGIIIGALIARLTN 30 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHcc
Confidence 567888888888888876543
No 181
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=57.72 E-value=1.6e+02 Score=27.32 Aligned_cols=123 Identities=16% Similarity=0.193 Sum_probs=67.7
Q ss_pred ceEEEEEEEEeeCCCCCC---CC--CCCCCcEEEEEECCCCeEEeeecCCCCCCCccc--eeEEEecCCC------CCC-
Q 023810 4 RYEVEVTITSAKDLKNVN---WR--HGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWD--ETLAIPLPGP------VDD- 69 (277)
Q Consensus 4 ~~~L~V~v~~A~~L~~~~---~~--~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~Wn--E~f~f~v~~~------~l~- 69 (277)
..+|.|+|..|++|...- +. .+....|...++-++ ...|.. .....+|.|. +...|.|..+ .+.
T Consensus 191 ~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn-~Vt~~~-F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~ 268 (340)
T PF12416_consen 191 LFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGN-DVTTEP-FKSLSSPSFPPERASGVRIRSSLRVLRRYFQQ 268 (340)
T ss_pred eEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCc-EeEeee-ccccCCCCcCeeeeeEEeecccHHHHHHHHhh
Confidence 367899999999986531 11 012344555666434 334444 4556677664 3333666543 111
Q ss_pred CceEEEEEEEccCCCCCCceeEEEEEecceeccccCCC--c---eeeEEEEeecC------CCCCceEEEEEEEEE
Q 023810 70 DTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLG--E---RASLTLKLKRP------SGRPHGKVDVKVAVR 134 (277)
Q Consensus 70 ~~~L~v~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~--~---~~~~~~~L~~~------sg~~~G~L~l~v~~~ 134 (277)
...|.|.+|..+ ..||.+.|+|..++...... . .....|.|.++ ....+=.|.|+|++.
T Consensus 269 ~~~L~I~Lc~g~------~~Lg~~~v~l~~Ll~~~~~~~~~~~~~~eg~F~l~~~~~~~~~~~~~~P~v~v~vtLr 338 (340)
T PF12416_consen 269 IPKLQIHLCCGN------QSLGSTSVPLQPLLPKDSLEFNNSPVIIEGAFPLNPPNRIKPKPNELKPTVGVSVTLR 338 (340)
T ss_pred CCCeEEEEeeCC------cEEEEEEEEhhhccCCCcccccCCceeecceEeecCCCccCCcccccCCeEEEEEEEE
Confidence 234556665543 45999999999987553311 1 12455666443 112345566666664
No 182
>PF11240 DUF3042: Protein of unknown function (DUF3042); InterPro: IPR021402 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=57.07 E-value=21 Score=23.74 Aligned_cols=22 Identities=18% Similarity=0.499 Sum_probs=11.3
Q ss_pred CCCchhHHHHHHHH--HHHhHhhh
Q 023810 226 FGGMGTGLAVGAVG--GILGGLAL 247 (277)
Q Consensus 226 ~~g~g~g~~~g~~~--g~~gg~~~ 247 (277)
|+.|+.|+++|+++ ++++|+++
T Consensus 1 mkkF~~G~l~G~~~t~aa~a~av~ 24 (54)
T PF11240_consen 1 MKKFGKGFLTGVAATLAAIAGAVF 24 (54)
T ss_pred CcchhhhHHHhHHHHHHHHHHHHH
Confidence 34555666666654 23444444
No 183
>PF13488 Gly-zipper_Omp: Glycine zipper
Probab=56.45 E-value=13 Score=23.80 Aligned_cols=20 Identities=35% Similarity=0.461 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhHhhhhhhh
Q 023810 232 GLAVGAVGGILGGLALAEGV 251 (277)
Q Consensus 232 g~~~g~~~g~~gg~~~~~~~ 251 (277)
++++|++.|.+.|.+++..+
T Consensus 23 ga~iGa~vGa~~G~~ig~~~ 42 (46)
T PF13488_consen 23 GAAIGAAVGAAVGAAIGNYM 42 (46)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666443
No 184
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=56.14 E-value=8.9 Score=38.47 Aligned_cols=51 Identities=14% Similarity=0.114 Sum_probs=35.7
Q ss_pred CCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEcc
Q 023810 26 PNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAG 81 (277)
Q Consensus 26 ~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~ 81 (277)
..++|+-+.++-.....+.+ ...+.+|.|+|+|.+.|.. ...+.|.|++..
T Consensus 27 al~~y~~v~vk~~~~~~~~~-~~~~~~~~~~~~F~~~v~~----~~~~~i~v~~~~ 77 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMT-KVELRIPELRETFHVEVVA----GGAKNIIVLLKS 77 (694)
T ss_pred hhhhhheeccceeecccccC-CCCCCCchhhhheeeeeec----CCceEEEEEecC
Confidence 46788888774222223333 4568899999999999865 567888888875
No 185
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=56.07 E-value=5.8 Score=40.85 Aligned_cols=65 Identities=23% Similarity=0.281 Sum_probs=46.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810 5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA 80 (277)
Q Consensus 5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~ 80 (277)
+.+++.+.+|..|+. ..+.||...++. ..+.+|++ +.++.-|.||++|++.+-. ...++|+.+++
T Consensus 759 gflh~~vhsat~lkq------s~~lY~Td~v~e~~~~~s~~st~~-iadT~~~~~npe~hv~~~~----sqS~r~~~~ek 827 (1112)
T KOG4269|consen 759 GFLHVIVHSATGLKQ------SRNLYCTDEVDEFGYFVSKASTRV-IADTAEPQWNPEKHVPVIE----SQSSRLEKTEK 827 (1112)
T ss_pred cceeeeecccccccc------ccceeeehhhhhhcccccccccee-eecccCCCCChhcccchhh----ccccchhhhcc
Confidence 568888889988863 335688776632 34668888 7889999999999998854 33455555553
No 186
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=51.98 E-value=9.2 Score=29.02 Aligned_cols=15 Identities=47% Similarity=0.802 Sum_probs=8.2
Q ss_pred CchhHHHHHHHHHHH
Q 023810 228 GMGTGLAVGAVGGIL 242 (277)
Q Consensus 228 g~g~g~~~g~~~g~~ 242 (277)
++|+++++|++.|+|
T Consensus 86 ~VGvaAaVGlllGlL 100 (104)
T COG4575 86 GVGVAAAVGLLLGLL 100 (104)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555544
No 187
>PF15084 DUF4550: Domain of unknown function (DUF4550)
Probab=51.29 E-value=16 Score=27.54 Aligned_cols=51 Identities=10% Similarity=0.151 Sum_probs=31.5
Q ss_pred EEEEECCCCeEEeeecCCCCCCCccceeEEEecCCC---CCCCceEEEEEEEcc
Q 023810 31 AVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGP---VDDDTTLIIDVVHAG 81 (277)
Q Consensus 31 v~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~---~l~~~~L~v~V~d~~ 81 (277)
+++..+...+.-+..+..+..=..|.++|.+.|+.. .+..-.|++.|||..
T Consensus 30 AKvF~e~~~K~~~~w~~gd~~Wv~W~~~~~i~vt~e~l~kl~~h~i~~kiwDtk 83 (99)
T PF15084_consen 30 AKVFLENESKTVKPWHEGDQVWVSWTHTFNINVTKELLKKLYFHKITLKIWDTK 83 (99)
T ss_pred eeEEEcCCceEeeeEecCCEEEEEEEEEEEeccCHHHHHHHHcCeEEEEEEcch
Confidence 455554333433333233333477899999998874 344567999999854
No 188
>COG4803 Predicted membrane protein [Function unknown]
Probab=50.88 E-value=10 Score=30.73 Aligned_cols=32 Identities=38% Similarity=0.653 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhhhhhhHHHHhhh
Q 023810 232 GLAVGAVGGILGGLALAEGVDALEDHIADEAAEKV 266 (277)
Q Consensus 232 g~~~g~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~ 266 (277)
|+++|++.|+|+|.+.+..+ +|++..++.+.+
T Consensus 82 G~avGAa~GAl~g~l~DvGI---dDdFik~l~~ti 113 (170)
T COG4803 82 GMAVGAASGALSGSLTDVGI---DDDFIKELGETI 113 (170)
T ss_pred HHHHHHhhhhhccceeecCc---CHHHHHHHHhhc
Confidence 66677777777777666433 344554544443
No 189
>PF10349 WWbp: WW-domain ligand protein; InterPro: IPR018826 This entry represents a sequence domain found in WW domain-binding protein that is characterised by several short PY and PT-like motifs of the PPPPY form. These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis []. This domain lies just downstream of IPR004182 from INTERPRO in many sequences.
Probab=50.67 E-value=1.1e+02 Score=23.50 Aligned_cols=16 Identities=19% Similarity=0.439 Sum_probs=11.7
Q ss_pred CCCceEEEEEEEEEec
Q 023810 121 GRPHGKVDVKVAVRES 136 (277)
Q Consensus 121 g~~~G~L~l~v~~~~~ 136 (277)
|...|+++|||+|++-
T Consensus 3 GGw~g~~~fKltFk~G 18 (116)
T PF10349_consen 3 GGWEGQAEFKLTFKSG 18 (116)
T ss_pred CCccCceEEEEEeCCC
Confidence 4556778888888774
No 190
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=49.96 E-value=18 Score=31.35 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhhhhhhHHH
Q 023810 232 GLAVGAVGGILGGLALAEGVDALEDHIADEA 262 (277)
Q Consensus 232 g~~~g~~~g~~gg~~~~~~~~~~~~~~~~~~ 262 (277)
++++|+++|.+.|+.++.-++..+.+..+++
T Consensus 62 ~a~~ga~~G~~~G~~~g~~~d~q~~~l~~~l 92 (219)
T PRK10510 62 GALIGAAAGAALGGGVGYYMDVQEAKLRDKM 92 (219)
T ss_pred hhhhHhHHHhhhhhhhhhhhhhHHHHHHHHh
Confidence 3445555555555566655555555444444
No 191
>KOG4028 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.42 E-value=98 Score=24.65 Aligned_cols=81 Identities=15% Similarity=0.174 Sum_probs=45.5
Q ss_pred EEEEeeCCCCCCCCCCCCCcEEEEEE--CC-------CCeEEeeecC-CCCCCCccceeEEEecCCCCCCC-ceEEEEEE
Q 023810 10 TITSAKDLKNVNWRHGPNRPYAVLWV--DP-------NKKCSTKVDD-EGDTCPYWDETLAIPLPGPVDDD-TTLIIDVV 78 (277)
Q Consensus 10 ~v~~A~~L~~~~~~~g~~dpYv~v~l--d~-------~~~~~T~v~~-~~~~nP~WnE~f~f~v~~~~l~~-~~L~v~V~ 78 (277)
.|.+|+++ +.+..+++..+ .. .....|.+|. .-..+-.|...+.+.+..+.++. -.|.|+||
T Consensus 9 qil~a~gf-------~dn~l~~k~~i~~g~~wkllqg~~egqtq~d~pqi~d~a~~ahpidlh~at~~iqgwprl~~qiw 81 (175)
T KOG4028|consen 9 QILGARGF-------GDNRLFCKWGIHFGAAWKLLQGEREGQTQTDCPQIFDMAHFAHPIDLHFATKGIQGWPRLHFQIW 81 (175)
T ss_pred eEeecccc-------CCCceEEEEeeeccceeeeeeccccCccccCCchhhhhhhhcCcceeeeecccccCCceeeeeee
Confidence 45667665 34456776555 11 2223444432 22345667666555554433332 45999999
Q ss_pred EccCCCCCCceeE--EEEEecc
Q 023810 79 HAGNEEDTKKLIG--SAKLKLK 98 (277)
Q Consensus 79 d~~~~~~~d~~iG--~~~v~L~ 98 (277)
+.++ +++.++-| .+.+|.+
T Consensus 82 ~~dn-fgr~eiagyg~~~lpss 102 (175)
T KOG4028|consen 82 HHDN-FGRCEIAGYGFCHLPSS 102 (175)
T ss_pred ecCc-ccceeecccceEeccCC
Confidence 9997 47777665 4555543
No 192
>PRK11677 hypothetical protein; Provisional
Probab=47.81 E-value=26 Score=27.93 Aligned_cols=19 Identities=26% Similarity=0.188 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhHhhhhhhh
Q 023810 233 LAVGAVGGILGGLALAEGV 251 (277)
Q Consensus 233 ~~~g~~~g~~gg~~~~~~~ 251 (277)
+++|+++|++.|+++....
T Consensus 6 a~i~livG~iiG~~~~R~~ 24 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMRFG 24 (134)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 4566666666666666543
No 193
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=47.17 E-value=30 Score=26.15 Aligned_cols=17 Identities=24% Similarity=0.214 Sum_probs=8.5
Q ss_pred HHHHHHHHhHhhhhhhh
Q 023810 235 VGAVGGILGGLALAEGV 251 (277)
Q Consensus 235 ~g~~~g~~gg~~~~~~~ 251 (277)
+|++.|+..|++.+...
T Consensus 20 ~G~~~GA~~Gal~G~l~ 36 (102)
T PF06897_consen 20 LGAAVGAAAGALAGALS 36 (102)
T ss_pred HHHHHHHHHHHHHhHHh
Confidence 44444555555555444
No 194
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=47.11 E-value=23 Score=33.50 Aligned_cols=44 Identities=20% Similarity=0.381 Sum_probs=30.1
Q ss_pred eeEEEEEecceeccccCCCceeeEEEEeecCCCC--CceEEEEEEEEEec
Q 023810 89 LIGSAKLKLKDVINDVGLGERASLTLKLKRPSGR--PHGKVDVKVAVRES 136 (277)
Q Consensus 89 ~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~--~~G~L~l~v~~~~~ 136 (277)
+||.+.|++..+... +.....||++.....+ -.|.| |++++.+.
T Consensus 1 ~~G~v~i~~~~~~~~---~~~~e~w~~i~~~~~~~~~~~~l-lk~~~~~~ 46 (395)
T cd05137 1 LVGRIDITLEMILDR---GLDKETWLPIFDVDNKSVGEGLI-IKVSSEEN 46 (395)
T ss_pred CeeEEEeehhhhccC---CCCceeeeccccCCCCCcCcceE-EEEEeeec
Confidence 489999999986654 3335688888764333 34566 68887765
No 195
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=45.61 E-value=18 Score=28.11 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=12.0
Q ss_pred CchhHHHHHHHHHHHhHhhhh
Q 023810 228 GMGTGLAVGAVGGILGGLALA 248 (277)
Q Consensus 228 g~g~g~~~g~~~g~~gg~~~~ 248 (277)
.|-.|+++|++.|++.+++++
T Consensus 6 ~~l~G~liGgiiGa~aaLL~A 26 (115)
T COG4980 6 DFLFGILIGGIIGAAAALLFA 26 (115)
T ss_pred hHHHHHHHHHHHHHHHHHHhC
Confidence 444466666666666665553
No 196
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.39 E-value=17 Score=33.22 Aligned_cols=50 Identities=12% Similarity=0.151 Sum_probs=40.7
Q ss_pred ccccccCCCchh--HHHHHHHHHHHhHhhhhhhhhhhhhhhhHHHHhhhhccc
Q 023810 220 EKKKSKFGGMGT--GLAVGAVGGILGGLALAEGVDALEDHIADEAAEKVEDDL 270 (277)
Q Consensus 220 ~~~~~~~~g~g~--g~~~g~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (277)
...+++|+|||| .+++-+++. ..-.--..+...++....+|+.++.+.++
T Consensus 23 e~L~kA~kG~Gtde~aII~iL~~-Rsn~QRq~I~~ayk~~ygkDLi~~Lk~EL 74 (321)
T KOG0819|consen 23 EQLRKAMKGFGTDEQAIIDILTH-RSNAQRQLIRAAYKTMYGKDLIKDLKSEL 74 (321)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHc-cCHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 578899999998 677787776 56666777778899999999998887776
No 197
>PF12734 CYSTM: Cysteine-rich TM module stress tolerance
Probab=42.27 E-value=58 Score=19.79 Aligned_cols=15 Identities=13% Similarity=0.133 Sum_probs=6.8
Q ss_pred HHHHHHHHHHhHhhh
Q 023810 233 LAVGAVGGILGGLAL 247 (277)
Q Consensus 233 ~~~g~~~g~~gg~~~ 247 (277)
.+.|.+|.+.=-.++
T Consensus 19 ~l~gClaaLcCCc~l 33 (37)
T PF12734_consen 19 CLAGCLAALCCCCLL 33 (37)
T ss_pred hHHHHHHHHHHHHHH
Confidence 455555544333333
No 198
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=41.54 E-value=1.5e+02 Score=22.92 Aligned_cols=92 Identities=18% Similarity=0.174 Sum_probs=47.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCcc-ceeEEEecCCC-CCCCceEEEEEEEccCC
Q 023810 6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYW-DETLAIPLPGP-VDDDTTLIIDVVHAGNE 83 (277)
Q Consensus 6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~W-nE~f~f~v~~~-~l~~~~L~v~V~d~~~~ 83 (277)
.|.|+-+.-..++..+.. +..+||+++.-.......|..... . .-.- .+.+.|.+... .+ .--+.|++|+.+..
T Consensus 5 ~l~L~~I~l~~iP~f~~~-~gc~p~i~I~~~~~~v~~~~~~~~-~-~~~~~~~~~~~~~~~~~~l-~GDV~i~~~~~~~~ 80 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSG-GGCRPYIEIYNGGKKVFSTSKSYE-D-PKSYEQDSVIIELPKNLPL-RGDVLIKFYHKRSS 80 (134)
T ss_dssp EEEEEEEEEES-TTSTTS-SCCTEEEEEEETTEEEEETCCTCC-C-CCEEETTCEEEEEEEEEEE-ESEEEEEEEECETT
T ss_pred eEEEEEEEEECCCccCCC-CCEEEEEEEECCCccEEEecccee-c-cccccceeEEEEeCCCCeE-eCCEEEEEEeCCCc
Confidence 566666666677655433 577899998874222223332111 1 0110 12233333211 12 23478899997732
Q ss_pred CCCCceeEEEEEecceec
Q 023810 84 EDTKKLIGSAKLKLKDVI 101 (277)
Q Consensus 84 ~~~d~~iG~~~v~L~~l~ 101 (277)
...++.+.++++.-.-+.
T Consensus 81 ~~~~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 81 SMSKEKMFRFWFNTGFIE 98 (134)
T ss_dssp ECCCEEEEEEEEEGGGSB
T ss_pred ccccCeEEEEEEeeeeee
Confidence 346677888888755444
No 199
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=40.71 E-value=36 Score=26.76 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=8.7
Q ss_pred HHHHHHHHHhHhhhhhhh
Q 023810 234 AVGAVGGILGGLALAEGV 251 (277)
Q Consensus 234 ~~g~~~g~~gg~~~~~~~ 251 (277)
++|+++|++.|+++....
T Consensus 3 ~i~lvvG~iiG~~~~r~~ 20 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLT 20 (128)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444555555555554433
No 200
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=40.08 E-value=1.7e+02 Score=27.35 Aligned_cols=7 Identities=14% Similarity=0.486 Sum_probs=3.2
Q ss_pred ceEEEEE
Q 023810 124 HGKVDVK 130 (277)
Q Consensus 124 ~G~L~l~ 130 (277)
.|+++|-
T Consensus 192 ~G~~R~~ 198 (498)
T KOG4849|consen 192 MGTIRIG 198 (498)
T ss_pred ccceeec
Confidence 3444443
No 201
>COG3944 Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]
Probab=38.95 E-value=32 Score=29.66 Aligned_cols=29 Identities=17% Similarity=0.411 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhhhhhhH
Q 023810 232 GLAVGAVGGILGGLALAEGVDALEDHIAD 260 (277)
Q Consensus 232 g~~~g~~~g~~gg~~~~~~~~~~~~~~~~ 260 (277)
-++++.++|++|+..+....+.+++++.+
T Consensus 175 Ni~iaf~~Gl~~~igiafl~e~lD~tIKs 203 (226)
T COG3944 175 NIVIAFLAGLAGAIGIAFLLEYLDKTIKS 203 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 56777788888888888888888877653
No 202
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=37.99 E-value=95 Score=28.54 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhHhhhh
Q 023810 232 GLAVGAVGGILGGLALA 248 (277)
Q Consensus 232 g~~~g~~~g~~gg~~~~ 248 (277)
|+.-|+++|.|+|.|++
T Consensus 253 GFWTGla~Gg~aGYl~G 269 (318)
T PF06682_consen 253 GFWTGLAAGGAAGYLFG 269 (318)
T ss_pred CchHHHHHHHHHHhhhc
Confidence 44445555555556655
No 203
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=37.66 E-value=30 Score=26.31 Aligned_cols=17 Identities=47% Similarity=0.696 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhHhhhh
Q 023810 232 GLAVGAVGGILGGLALA 248 (277)
Q Consensus 232 g~~~g~~~g~~gg~~~~ 248 (277)
+++++++.|+|.|++|+
T Consensus 86 ~VGvaAaVGlllGlLls 102 (104)
T COG4575 86 GVGVAAAVGLLLGLLLS 102 (104)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 67788888888888886
No 204
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=34.55 E-value=57 Score=25.32 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=10.8
Q ss_pred CCchhHHHHHHHHHHHh
Q 023810 227 GGMGTGLAVGAVGGILG 243 (277)
Q Consensus 227 ~g~g~g~~~g~~~g~~g 243 (277)
.|+.+|+++|+++++|.
T Consensus 9 ~G~liGgiiGa~aaLL~ 25 (115)
T COG4980 9 FGILIGGIIGAAAALLF 25 (115)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 35666666666666655
No 205
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family, Gram-positive type. This family contains members from Low GC Gram-positive bacteria; they are proposed to have a function in the export of complex polysaccharides.
Probab=33.69 E-value=38 Score=28.98 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhhhhhhH
Q 023810 232 GLAVGAVGGILGGLALAEGVDALEDHIAD 260 (277)
Q Consensus 232 g~~~g~~~g~~gg~~~~~~~~~~~~~~~~ 260 (277)
-+++|+++|++.|+++..+++.+++.+.+
T Consensus 177 ~~~~g~~~G~~~~~~~~~~~~~~d~~i~~ 205 (226)
T TIGR01006 177 NLLIGFLLGLVVALIIVLLKELLDTRVKR 205 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcCC
Confidence 45667777777777777777777766653
No 206
>PRK00523 hypothetical protein; Provisional
Probab=32.70 E-value=50 Score=23.35 Aligned_cols=12 Identities=17% Similarity=0.174 Sum_probs=7.0
Q ss_pred HHHHHHhHhhhh
Q 023810 237 AVGGILGGLALA 248 (277)
Q Consensus 237 ~~~g~~gg~~~~ 248 (277)
+++|+++|+.++
T Consensus 15 li~G~~~Gffia 26 (72)
T PRK00523 15 LIVGGIIGYFVS 26 (72)
T ss_pred HHHHHHHHHHHH
Confidence 555666666654
No 207
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=32.28 E-value=41 Score=24.68 Aligned_cols=16 Identities=38% Similarity=0.453 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhHhhhh
Q 023810 233 LAVGAVGGILGGLALA 248 (277)
Q Consensus 233 ~~~g~~~g~~gg~~~~ 248 (277)
+++++++|+|.|+++.
T Consensus 77 vgiAagvG~llG~Ll~ 92 (94)
T PF05957_consen 77 VGIAAGVGFLLGLLLR 92 (94)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4444445566666653
No 208
>COG4395 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.65 E-value=36 Score=30.61 Aligned_cols=15 Identities=33% Similarity=0.685 Sum_probs=9.0
Q ss_pred ccccCCCchhHHHHH
Q 023810 222 KKSKFGGMGTGLAVG 236 (277)
Q Consensus 222 ~~~~~~g~g~g~~~g 236 (277)
.++.|+||..|+++|
T Consensus 29 ~~~~~g~l~ggl~~g 43 (281)
T COG4395 29 FSGMLGGLAGGLLMG 43 (281)
T ss_pred hhhhhhHHHHHHHHh
Confidence 345566665566666
No 209
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=30.85 E-value=1.1e+02 Score=28.21 Aligned_cols=21 Identities=43% Similarity=0.512 Sum_probs=16.2
Q ss_pred CCchhHHHHHHHHHHHhHhhh
Q 023810 227 GGMGTGLAVGAVGGILGGLAL 247 (277)
Q Consensus 227 ~g~g~g~~~g~~~g~~gg~~~ 247 (277)
-||=||+++|+++|-|.|---
T Consensus 252 PGFWTGla~Gg~aGYl~G~r~ 272 (318)
T PF06682_consen 252 PGFWTGLAAGGAAGYLFGRRR 272 (318)
T ss_pred CCchHHHHHHHHHHhhhccCC
Confidence 378889999999997776544
No 210
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.06 E-value=4.6e+02 Score=24.41 Aligned_cols=19 Identities=16% Similarity=0.333 Sum_probs=9.8
Q ss_pred hhhhhhhhhhhhHHHHhhh
Q 023810 248 AEGVDALEDHIADEAAEKV 266 (277)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~ 266 (277)
+.+++..+++..++.+|+.
T Consensus 209 asvisa~~eklR~r~eeem 227 (365)
T KOG2391|consen 209 ASVISAVREKLRRRREEEM 227 (365)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555443
No 211
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=29.51 E-value=41 Score=27.12 Aligned_cols=20 Identities=45% Similarity=0.434 Sum_probs=8.7
Q ss_pred CCchh-HHHHHHHHHHHhHhh
Q 023810 227 GGMGT-GLAVGAVGGILGGLA 246 (277)
Q Consensus 227 ~g~g~-g~~~g~~~g~~gg~~ 246 (277)
.||++ |.++.++||++|.+.
T Consensus 124 iGm~v~gGa~~~v~gl~g~~~ 144 (149)
T KOG3364|consen 124 IGMVVVGGAALAVGGLAGIAS 144 (149)
T ss_pred eeeeehhhHHHHHHHHHHHHH
Confidence 45543 333444444444433
No 212
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=29.42 E-value=51 Score=22.79 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhHhhhh
Q 023810 233 LAVGAVGGILGGLALA 248 (277)
Q Consensus 233 ~~~g~~~g~~gg~~~~ 248 (277)
+++++++|+++|+.++
T Consensus 3 iilali~G~~~Gff~a 18 (64)
T PF03672_consen 3 IILALIVGAVIGFFIA 18 (64)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566677777777764
No 213
>PF13441 Gly-zipper_YMGG: YMGG-like Gly-zipper
Probab=28.89 E-value=51 Score=21.09 Aligned_cols=17 Identities=35% Similarity=0.618 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhHhhhh
Q 023810 232 GLAVGAVGGILGGLALA 248 (277)
Q Consensus 232 g~~~g~~~g~~gg~~~~ 248 (277)
++++|+++|++.|.+++
T Consensus 6 GA~iGA~~GA~iG~~~g 22 (45)
T PF13441_consen 6 GAAIGAAAGAVIGAIIG 22 (45)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 55666666666665555
No 214
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.23 E-value=62 Score=22.74 Aligned_cols=17 Identities=24% Similarity=0.632 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhHhhhh
Q 023810 232 GLAVGAVGGILGGLALA 248 (277)
Q Consensus 232 g~~~g~~~g~~gg~~~~ 248 (277)
...+.+++|++||..++
T Consensus 9 ~ivl~ll~G~~~G~fia 25 (71)
T COG3763 9 LIVLALLAGLIGGFFIA 25 (71)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456667777777765
No 215
>cd05701 S1_Rrp5_repeat_hs10 S1_Rrp5_repeat_hs10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 10 (hs10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=27.49 E-value=1e+02 Score=21.39 Aligned_cols=48 Identities=8% Similarity=0.054 Sum_probs=27.9
Q ss_pred CcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEcc
Q 023810 28 RPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAG 81 (277)
Q Consensus 28 dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~ 81 (277)
.-|+++++. +.-.-|-+ ...+..|.+|+|.-..-.. ...|.+++.+-+
T Consensus 13 kdfAvvSL~-~t~~L~a~----p~~sHLNdtfrf~seklkv-G~~l~v~lk~~~ 60 (69)
T cd05701 13 KDFAIVSLA-TTGDLAAF----PTRSHLNDTFRFDSEKLSV-GQCLDVTLKDPN 60 (69)
T ss_pred hceEEEEee-ccccEEEE----Echhhccccccccceeeec-cceEEEEEecCc
Confidence 347888884 33333333 2356678888875433111 467888887654
No 216
>PRK10404 hypothetical protein; Provisional
Probab=27.03 E-value=55 Score=24.70 Aligned_cols=10 Identities=40% Similarity=0.567 Sum_probs=4.5
Q ss_pred HHHHHhHhhh
Q 023810 238 VGGILGGLAL 247 (277)
Q Consensus 238 ~~g~~gg~~~ 247 (277)
+.|+|.|++|
T Consensus 89 gvGlllG~Ll 98 (101)
T PRK10404 89 AVGLVLGLLL 98 (101)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 217
>COG3133 SlyB Outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=26.14 E-value=56 Score=26.18 Aligned_cols=23 Identities=30% Similarity=0.487 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHhHhhhhhhhhh
Q 023810 231 TGLAVGAVGGILGGLALAEGVDA 253 (277)
Q Consensus 231 ~g~~~g~~~g~~gg~~~~~~~~~ 253 (277)
.+.++|++||.+.|..+++.|+.
T Consensus 86 ~At~~GAvAGgvaG~~ie~~~n~ 108 (154)
T COG3133 86 LATAAGAVAGGVAGQGIEEAMNK 108 (154)
T ss_pred HHHHHhHhhhhhhhhhhHhhhcc
Confidence 36677777877778888777753
No 218
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=25.48 E-value=23 Score=29.07 Aligned_cols=18 Identities=33% Similarity=0.521 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHHhHh
Q 023810 228 GMGTGLAVGAVGGILGGL 245 (277)
Q Consensus 228 g~g~g~~~g~~~g~~gg~ 245 (277)
|+.++.++|++.|+|.+.
T Consensus 125 GL~T~tLVGIIVGVLlaI 142 (162)
T PF05808_consen 125 GLSTVTLVGIIVGVLLAI 142 (162)
T ss_dssp ------------------
T ss_pred CcceeeeeeehhhHHHHH
Confidence 788878888777765543
No 219
>PRK10132 hypothetical protein; Provisional
Probab=25.39 E-value=64 Score=24.69 Aligned_cols=14 Identities=36% Similarity=0.408 Sum_probs=6.9
Q ss_pred HHHHHHHHhHhhhh
Q 023810 235 VGAVGGILGGLALA 248 (277)
Q Consensus 235 ~g~~~g~~gg~~~~ 248 (277)
++++.|+|.|++|+
T Consensus 92 iaagvG~llG~Ll~ 105 (108)
T PRK10132 92 TAAAVGIFIGALLS 105 (108)
T ss_pred HHHHHHHHHHHHHh
Confidence 33444555555553
No 220
>PRK01844 hypothetical protein; Provisional
Probab=25.26 E-value=67 Score=22.72 Aligned_cols=14 Identities=36% Similarity=0.529 Sum_probs=8.8
Q ss_pred HHHHHHHHhHhhhh
Q 023810 235 VGAVGGILGGLALA 248 (277)
Q Consensus 235 ~g~~~g~~gg~~~~ 248 (277)
+++++|+++|+.++
T Consensus 12 ~~li~G~~~Gff~a 25 (72)
T PRK01844 12 VALVAGVALGFFIA 25 (72)
T ss_pred HHHHHHHHHHHHHH
Confidence 45566666776664
No 221
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=24.77 E-value=1.3e+02 Score=24.33 Aligned_cols=21 Identities=38% Similarity=0.335 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhHhhhhhhhhh
Q 023810 233 LAVGAVGGILGGLALAEGVDA 253 (277)
Q Consensus 233 ~~~g~~~g~~gg~~~~~~~~~ 253 (277)
+++|++.|++.|.++..+++.
T Consensus 5 L~~gaalG~~~~eLlk~v~~~ 25 (147)
T PF05659_consen 5 LVGGAALGAVFGELLKAVIDA 25 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555543
No 222
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=24.59 E-value=16 Score=36.55 Aligned_cols=35 Identities=11% Similarity=0.183 Sum_probs=27.5
Q ss_pred CCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEec
Q 023810 26 PNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPL 63 (277)
Q Consensus 26 ~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v 63 (277)
++++++.+.++ ....||+. ...+.+|+|||. .+.+
T Consensus 304 ~~~~~~itsf~-~~~frt~~-~~~~e~piyNe~-~~E~ 338 (975)
T KOG2419|consen 304 KDKWLAITSFG-EQTFRTEI-SDDTEKPIYNED-ERED 338 (975)
T ss_pred CCCchheeecc-hhhhhhhh-hccccccccccc-cccc
Confidence 56788888884 77788988 677999999997 4444
No 223
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.33 E-value=4.1e+02 Score=21.97 Aligned_cols=45 Identities=9% Similarity=0.136 Sum_probs=29.5
Q ss_pred CccceeEEEecCCC-CCCCceEEEEEEEccCCCCCCceeEEEEEecc
Q 023810 53 PYWDETLAIPLPGP-VDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLK 98 (277)
Q Consensus 53 P~WnE~f~f~v~~~-~l~~~~L~v~V~d~~~~~~~d~~iG~~~v~L~ 98 (277)
-+||--|.+.+..+ ...=-.|.+.||..+. +++|.+.|-..|+|-
T Consensus 64 iv~n~Pievt~KstsPygWPqivl~vfg~d~-~G~d~v~GYg~~hiP 109 (187)
T KOG4027|consen 64 IVINLPIEVTLKSTSPYGWPQIVLNVFGKDH-SGKDCVTGYGMLHIP 109 (187)
T ss_pred eEEecceEEEeccCCCCCCceEEEEEecCCc-CCcceeeeeeeEecC
Confidence 45676666555442 1112358899999886 578888987766653
No 224
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=24.19 E-value=90 Score=24.61 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhhhhhhH
Q 023810 232 GLAVGAVGGILGGLALAEGVDALEDHIAD 260 (277)
Q Consensus 232 g~~~g~~~g~~gg~~~~~~~~~~~~~~~~ 260 (277)
=+++|+.|-+++|.+++.+++.-.+|.+|
T Consensus 48 L~vmgfFgff~~gImlsyvRSKK~E~s~D 76 (129)
T PF02060_consen 48 LVVMGFFGFFTVGIMLSYVRSKKREHSHD 76 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 46788888899999999999877666554
No 225
>PF14472 DUF4429: Domain of unknown function (DUF4429)
Probab=23.06 E-value=1.2e+02 Score=22.29 Aligned_cols=34 Identities=18% Similarity=0.417 Sum_probs=21.2
Q ss_pred ceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEE
Q 023810 88 KLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVA 132 (277)
Q Consensus 88 ~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~ 132 (277)
.-.|..+|+|++|.. ++++.+.....|.|++.+.
T Consensus 22 ~~~G~~~ipl~~i~g-----------V~~~~pg~~~~G~Lrf~~~ 55 (94)
T PF14472_consen 22 RALGEKTIPLSAISG-----------VEWKPPGGLTNGYLRFVLR 55 (94)
T ss_pred ccCCCEEEEHHHcce-----------EEEEcCCceeEEEEEEEEC
Confidence 448999999998742 2233344444777765544
No 226
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=22.44 E-value=5.5e+02 Score=26.71 Aligned_cols=15 Identities=13% Similarity=0.344 Sum_probs=9.7
Q ss_pred eeEEEEEecceeccc
Q 023810 89 LIGSAKLKLKDVIND 103 (277)
Q Consensus 89 ~iG~~~v~L~~l~~~ 103 (277)
-+|-..||...|...
T Consensus 508 ~lGVt~IP~~kLt~d 522 (894)
T KOG0132|consen 508 ELGVTYIPWEKLTDD 522 (894)
T ss_pred ccCeeEeehHhcCHH
Confidence 367778887665543
No 227
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.89 E-value=3.1e+02 Score=26.58 Aligned_cols=63 Identities=22% Similarity=0.351 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 023810 148 PYGVPPSGSRDYPAPPPYGYPYGRPPQDPYYATAPPPSGYPYGAYNAPPAYGQPSYGAYGAAPPGG 213 (277)
Q Consensus 148 p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~y~~~~y~~~~~~~~~~~~~y~~~p~~~ 213 (277)
.+-.+.++++-|+++.+.-... ++++.+..++.+.++..+.|+.++.+|.....+-.++|+.+
T Consensus 408 ~~s~p~pq~qNyppp~p~f~m~---~~hP~~~~p~~~~g~~~P~~~mpp~~P~~~~pppP~~pp~p 470 (483)
T KOG2236|consen 408 DNSGPSPQQQNYPPPSPSFPMF---QPHPPESNPPANFGQANPFNQMPPAYPHQQSPPPPPPPPPP 470 (483)
T ss_pred CCCCCCcccCCCCCCCCCCCcc---CCCCCCCCCcccccccCccccCCCCCccccCCCCCCCCCCC
No 228
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=21.03 E-value=92 Score=26.87 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=11.5
Q ss_pred HhhhhhhhhhhhhhhhHHHHhhh
Q 023810 244 GLALAEGVDALEDHIADEAAEKV 266 (277)
Q Consensus 244 g~~~~~~~~~~~~~~~~~~~~~~ 266 (277)
|.+++.++..+-|+.+.++.++.
T Consensus 70 G~~~G~~~g~~~d~q~~~l~~~l 92 (219)
T PRK10510 70 GAALGGGVGYYMDVQEAKLRDKM 92 (219)
T ss_pred HhhhhhhhhhhhhhHHHHHHHHh
Confidence 44444455555555555554443
No 229
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=20.40 E-value=51 Score=22.99 Aligned_cols=17 Identities=47% Similarity=0.497 Sum_probs=8.4
Q ss_pred CchhHHHHHHHHHHHhH
Q 023810 228 GMGTGLAVGAVGGILGG 244 (277)
Q Consensus 228 g~g~g~~~g~~~g~~gg 244 (277)
|+.+|.++|.+.|++-|
T Consensus 10 G~~MG~~VG~~~G~l~G 26 (67)
T PF10247_consen 10 GFMMGGAVGGAFGALFG 26 (67)
T ss_pred HHHHhhHHHhhhhhhhh
Confidence 44445555555554443
No 230
>PF14999 Shadoo: Shadow of prion protein, neuroprotective
Probab=20.35 E-value=21 Score=27.51 Aligned_cols=17 Identities=47% Similarity=0.685 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHhHhhhh
Q 023810 232 GLAVGAVGGILGGLALA 248 (277)
Q Consensus 232 g~~~g~~~g~~gg~~~~ 248 (277)
++++|+++|+..|+..+
T Consensus 50 ~AaAGAAAgaAaglaag 66 (131)
T PF14999_consen 50 GAAAGAAAGAAAGLAAG 66 (131)
T ss_pred hhhhhhhhhhhhhcccc
Confidence 34455555555555544
Done!