Your job contains 1 sequence.
>023811
MPVVSGYNSSDCPIRYFQNPSSRSLLFESRSEEKKKKIRMAASDRTVLQFGPSSAATSNV
TAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALD
IEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNG
EGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLPSDLEGMEV
LMERLLTLINDIYKYVDDTVVSMIIFLFLFYSQIVLI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 023811
(277 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2061206 - symbol:EIF2 "AT2G39990" species:3702... 927 4.3e-93 1
MGI|MGI:1913335 - symbol:Eif3f "eukaryotic translation in... 409 2.2e-40 2
UNIPROTKB|B3KSH1 - symbol:EIF3F "HCG1784554, isoform CRA_... 408 2.8e-40 2
UNIPROTKB|O00303 - symbol:EIF3F "Eukaryotic translation i... 408 2.8e-40 2
UNIPROTKB|A5A6I3 - symbol:EIF3F "Eukaryotic translation i... 408 2.8e-40 2
UNIPROTKB|Q4R5B8 - symbol:EIF3F "Eukaryotic translation i... 408 2.8e-40 2
UNIPROTKB|E1BLZ8 - symbol:EIF3F "Uncharacterized protein"... 408 4.3e-38 1
DICTYBASE|DDB_G0293254 - symbol:eif3F "eukaryotic transla... 396 8.0e-37 1
FB|FBgn0037270 - symbol:CG9769 species:7227 "Drosophila m... 387 7.2e-36 1
UNIPROTKB|E1C050 - symbol:EIF3F "Uncharacterized protein"... 387 7.2e-36 1
ASPGD|ASPL0000055955 - symbol:AN10182 species:162425 "Eme... 325 2.7e-29 1
POMBASE|SPBC4C3.07 - symbol:SPBC4C3.07 "translation initi... 305 3.5e-27 1
UNIPROTKB|B4DEW9 - symbol:EIF3F "Eukaryotic translation i... 265 6.1e-23 1
FB|FBgn0033069 - symbol:CG8335 species:7227 "Drosophila m... 264 7.8e-23 1
TAIR|locus:2074653 - symbol:MEE34 "AT3G11270" species:370... 249 3.0e-21 1
DICTYBASE|DDB_G0279633 - symbol:psmD7 "26S proteasome non... 248 3.9e-21 1
UNIPROTKB|A4R0E5 - symbol:MGG_10653 "Eukaryotic translati... 236 1.1e-19 1
TAIR|locus:2166449 - symbol:RPN8A "AT5G05780" species:370... 232 1.9e-19 1
WB|WBGene00004464 - symbol:rpn-8 species:6239 "Caenorhabd... 228 7.9e-19 1
UNIPROTKB|O61792 - symbol:rpn-8 "Protein RPN-8" species:6... 228 7.9e-19 1
FB|FBgn0002787 - symbol:Rpn8 "Regulatory particle non-ATP... 214 2.2e-17 1
ZFIN|ZDB-GENE-050417-289 - symbol:cops6 "COP9 constitutiv... 203 2.3e-16 1
WB|WBGene00001229 - symbol:eif-3.F species:6239 "Caenorha... 199 6.0e-16 1
MGI|MGI:1351511 - symbol:Psmd7 "proteasome (prosome, macr... 194 3.6e-15 1
UNIPROTKB|P51665 - symbol:PSMD7 "26S proteasome non-ATPas... 194 3.7e-15 1
RGD|1306902 - symbol:Psmd7 "proteasome (prosome, macropai... 193 4.5e-15 1
DICTYBASE|DDB_G0293180 - symbol:csn6 "Mov34/MPN/PAD-1 fam... 192 4.8e-15 1
UNIPROTKB|Q3ZBD0 - symbol:PSMD7 "26S proteasome non-ATPas... 192 6.1e-15 1
UNIPROTKB|A7TX81 - symbol:COPS6 "COP9 signalosome complex... 190 2.1e-14 1
UNIPROTKB|F1MG10 - symbol:COPS6 "COP9 signalosome complex... 190 2.1e-14 1
POMBASE|SPCC1682.10 - symbol:rpn8 "19S proteasome regulat... 190 2.1e-14 1
UNIPROTKB|A6QQ21 - symbol:COPS6 "COP9 signalosome complex... 189 4.2e-14 1
MGI|MGI:1349439 - symbol:Cops6 "COP9 (constitutive photom... 188 9.1e-14 1
UNIPROTKB|Q7L5N1 - symbol:COPS6 "COP9 signalosome complex... 185 3.8e-13 1
RGD|1309919 - symbol:Cops6 "COP9 signalosome subunit 6" s... 185 4.6e-13 1
UNIPROTKB|E7EM64 - symbol:COPS6 "COP9 signalosome complex... 183 7.6e-13 1
ZFIN|ZDB-GENE-030131-5541 - symbol:psmd7 "proteasome (pro... 182 1.2e-12 1
ASPGD|ASPL0000029143 - symbol:AN5121 species:162425 "Emer... 179 4.3e-12 1
CGD|CAL0002371 - symbol:RPN8 species:5476 "Candida albica... 178 4.8e-12 1
UNIPROTKB|Q59YL2 - symbol:RPN8 "Likely 26S proteasome reg... 178 4.8e-12 1
UNIPROTKB|G4NCJ9 - symbol:MGG_01059 "26S proteasome regul... 178 6.3e-12 1
CGD|CAL0000353 - symbol:orf19.4283 species:5476 "Candida ... 177 7.4e-12 1
UNIPROTKB|Q5AG96 - symbol:CaO19.11759 "Potential translat... 177 7.4e-12 1
SGD|S000005787 - symbol:RPN8 "non-ATPase regulatory subun... 162 7.1e-10 1
FB|FBgn0028837 - symbol:CSN6 "COP9 complex homolog subuni... 148 3.8e-08 1
TAIR|locus:2177601 - symbol:CSN6A "AT5G56280" species:370... 99 7.7e-06 2
TAIR|locus:2131493 - symbol:CSN6B "AT4G26430" species:370... 103 1.1e-05 2
ZFIN|ZDB-GENE-040808-19 - symbol:eif3ha "eukaryotic trans... 110 6.6e-05 2
UNIPROTKB|Q6P381 - symbol:eif3h "Eukaryotic translation i... 116 0.00020 1
UNIPROTKB|Q5PPY6 - symbol:eif3h "Eukaryotic translation i... 112 0.00032 2
ZFIN|ZDB-GENE-051030-42 - symbol:eif3hb "eukaryotic trans... 105 0.00032 2
UNIPROTKB|B4DXI8 - symbol:PSMD7 "26S proteasome non-ATPas... 111 0.00040 1
>TAIR|locus:2061206 [details] [associations]
symbol:EIF2 "AT2G39990" species:3702 "Arabidopsis
thaliana" [GO:0003743 "translation initiation factor activity"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISM;IDA] [GO:0005852
"eukaryotic translation initiation factor 3 complex" evidence=ISS]
[GO:0006413 "translational initiation" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0016020 "membrane" evidence=IDA]
[GO:0009790 "embryo development" evidence=IMP] [GO:0009846 "pollen
germination" evidence=IMP] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 GO:GO:0005829
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0016020
GO:GO:0009790 GO:GO:0003743 eggNOG:COG1310 GO:GO:0009846
EMBL:AF002109 InterPro:IPR024969 Pfam:PF13012 KO:K03249 OMA:HPVVLFQ
HAMAP:MF_03005 EMBL:U54561 EMBL:AY045824 EMBL:AY091363
IPI:IPI00527838 PIR:H84823 RefSeq:NP_181528.1 UniGene:At.10968
ProteinModelPortal:O04202 SMR:O04202 STRING:O04202 PaxDb:O04202
PRIDE:O04202 EnsemblPlants:AT2G39990.1 GeneID:818587
KEGG:ath:AT2G39990 GeneFarm:2126 TAIR:At2g39990
HOGENOM:HOG000241154 InParanoid:O04202 PhylomeDB:O04202
ProtClustDB:CLSN2683386 Genevestigator:O04202 GermOnline:AT2G39990
Uniprot:O04202
Length = 293
Score = 927 (331.4 bits), Expect = 4.3e-93, P = 4.3e-93
Identities = 174/228 (76%), Positives = 199/228 (87%)
Query: 41 AASDRTVLQF-GPSSAA---TSNVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLP 96
A S+ T+LQF PSS A TS +TA++HPLVIFN+CDC+VRRPD AERVIGTLLGS+LP
Sbjct: 3 ATSEHTILQFVSPSSTASATTSVLTARIHPLVIFNVCDCFVRRPDSAERVIGTLLGSILP 62
Query: 97 DGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSAL 156
DGTVDIRNSY VPHNE SDQVA+DI+YHH ML SHLKVN +E IVGW+STG GV GGS+L
Sbjct: 63 DGTVDIRNSYAVPHNESSDQVAVDIDYHHNMLASHLKVNSKETIVGWYSTGAGVNGGSSL 122
Query: 157 IHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAE 216
IH+FY REVPNP+HLTVDTGF NGEGT+KA+VS NLSLGDRQL A FQEIP+DLRM++AE
Sbjct: 123 IHDFYAREVPNPIHLTVDTGFTNGEGTIKAFVSSNLSLGDRQLVAHFQEIPVDLRMVDAE 182
Query: 217 RVGFDILKSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVVSMI 264
RVGFD+LK+TSVDKLP+DLEGME+ MERLLTLIND+YKYVD V I
Sbjct: 183 RVGFDVLKATSVDKLPNDLEGMELTMERLLTLINDVYKYVDSVVGGQI 230
>MGI|MGI:1913335 [details] [associations]
symbol:Eif3f "eukaryotic translation initiation factor 3,
subunit F" species:10090 "Mus musculus" [GO:0003743 "translation
initiation factor activity" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005852 "eukaryotic translation initiation factor
3 complex" evidence=ISO;IDA] [GO:0006412 "translation"
evidence=IEA] [GO:0006413 "translational initiation"
evidence=ISO;IDA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0008233 "peptidase activity" evidence=IEA] [GO:0008234
"cysteine-type peptidase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 MGI:MGI:1913335 GO:GO:0006413 GO:GO:0008234
GO:GO:0006508 EMBL:CH466531 GO:GO:0003743 eggNOG:COG1310
GO:GO:0005852 InterPro:IPR024969 Pfam:PF13012
GeneTree:ENSGT00530000063075 KO:K03249 OMA:HPVVLFQ HAMAP:MF_03005
HOGENOM:HOG000241154 MEROPS:M67.974 CTD:8665 HOVERGEN:HBG107843
OrthoDB:EOG44XJHN EMBL:AK002778 EMBL:BC083190 IPI:IPI00120914
RefSeq:NP_079620.2 UniGene:Mm.182962 ProteinModelPortal:Q9DCH4
SMR:Q9DCH4 DIP:DIP-42766N IntAct:Q9DCH4 MINT:MINT-1899046
STRING:Q9DCH4 PhosphoSite:Q9DCH4 PaxDb:Q9DCH4 PRIDE:Q9DCH4
Ensembl:ENSMUST00000033342 GeneID:66085 KEGG:mmu:66085
InParanoid:Q5XJV3 ChiTaRS:EIF3F NextBio:320584 Bgee:Q9DCH4
Genevestigator:Q9DCH4 GermOnline:ENSMUSG00000031029 Uniprot:Q9DCH4
Length = 361
Score = 409 (149.0 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
Identities = 80/203 (39%), Positives = 127/203 (62%)
Query: 63 KVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIE 122
++HP+++ +I D Y RR + A RVIGTLLG+V +V++ N + VPHNE D+VA+D+E
Sbjct: 97 RLHPVILASIVDSYERRNEGAARVIGTLLGTV-DKHSVEVTNCFSVPHNESEDEVAVDME 155
Query: 123 YHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEG 182
+ M + H KV+P E+I+GW++TG +T S LIHE+Y RE PNP+HLTVDTG ++G
Sbjct: 156 FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTGLQHGRM 215
Query: 183 TVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTS-----VDKLPSDLEG 237
++KAYVS + + R + F + + + ER+G D++ T V L SDL+
Sbjct: 216 SIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQ 275
Query: 238 MEVLMERLLTLINDIYKYVDDTV 260
+ R+ ++ + +Y +D +
Sbjct: 276 VGGASARIQDALSTVLQYAEDVL 298
Score = 37 (18.1 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 245 LLTLINDIYKYVDDTVVSMI 264
L++L+N + K V D +M+
Sbjct: 312 LMSLVNQVPKIVPDDFETML 331
>UNIPROTKB|B3KSH1 [details] [associations]
symbol:EIF3F "HCG1784554, isoform CRA_a" species:9606 "Homo
sapiens" [GO:0003743 "translation initiation factor activity"
evidence=IEA] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
EMBL:CH471064 GO:GO:0003743 InterPro:IPR024969 Pfam:PF13012
OMA:HPVVLFQ HOGENOM:HOG000241154 UniGene:Hs.516023 HGNC:HGNC:3275
HOVERGEN:HBG107843 EMBL:AC044810 EMBL:AC116456 EMBL:AK093511
IPI:IPI00654777 SMR:B3KSH1 IntAct:B3KSH1 STRING:B3KSH1
Ensembl:ENST00000537635 Uniprot:B3KSH1
Length = 372
Score = 408 (148.7 bits), Expect = 2.8e-40, Sum P(2) = 2.8e-40
Identities = 80/203 (39%), Positives = 126/203 (62%)
Query: 63 KVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIE 122
++HP+++ +I D Y RR + A RVIGTLLG+V +V++ N + VPHNE D+VA+D+E
Sbjct: 108 RLHPVILASIVDSYERRNEGAARVIGTLLGTV-DKHSVEVTNCFSVPHNESEDEVAVDME 166
Query: 123 YHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEG 182
+ M + H KV+P E+I+GW++TG +T S LIHE+Y RE PNP+HLTVDT +NG
Sbjct: 167 FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRM 226
Query: 183 TVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTS-----VDKLPSDLEG 237
++KAYVS + + R + F + + + ER+G D++ T V L SDL+
Sbjct: 227 SIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQ 286
Query: 238 MEVLMERLLTLINDIYKYVDDTV 260
+ R+ ++ + +Y +D +
Sbjct: 287 VGGASARIQDALSTVLQYAEDVL 309
Score = 37 (18.1 bits), Expect = 2.8e-40, Sum P(2) = 2.8e-40
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 245 LLTLINDIYKYVDDTVVSMI 264
L++L+N + K V D +M+
Sbjct: 323 LMSLVNQVPKIVPDDFETML 342
>UNIPROTKB|O00303 [details] [associations]
symbol:EIF3F "Eukaryotic translation initiation factor 3
subunit F" species:9606 "Homo sapiens" [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008234 "cysteine-type peptidase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005852 "eukaryotic translation initiation factor 3 complex"
evidence=IDA;TAS] [GO:0003743 "translation initiation factor
activity" evidence=IC;IDA;TAS] [GO:0006413 "translational
initiation" evidence=IC;IDA;TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006412 "translation" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0044267 "cellular protein
metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_17015 InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
GO:GO:0005829 GO:GO:0008234 GO:GO:0006508 GO:GO:0003743
eggNOG:COG1310 GO:GO:0005852 InterPro:IPR024969 Pfam:PF13012
KO:K03249 HAMAP:MF_03005 Reactome:REACT_1762 HOGENOM:HOG000241154
EMBL:U94855 EMBL:AK095574 EMBL:AK289637 EMBL:AK291354 EMBL:BT006894
EMBL:CR456959 EMBL:BC000490 IPI:IPI00941255 RefSeq:NP_003745.1
UniGene:Hs.516023 ProteinModelPortal:O00303 SMR:O00303
DIP:DIP-35580N IntAct:O00303 MINT:MINT-5000761 STRING:O00303
MEROPS:M67.974 PhosphoSite:O00303 PaxDb:O00303 PRIDE:O00303
DNASU:8665 Ensembl:ENST00000309828 Ensembl:ENST00000533626
GeneID:8665 KEGG:hsa:8665 UCSC:uc001mfw.3 CTD:8665
GeneCards:GC11P007966 HGNC:HGNC:3275 HPA:HPA049250 MIM:603914
neXtProt:NX_O00303 PharmGKB:PA162384806 HOVERGEN:HBG107843
InParanoid:O00303 OrthoDB:EOG44XJHN PhylomeDB:O00303
GenomeRNAi:8665 NextBio:32503 ArrayExpress:O00303 Bgee:O00303
CleanEx:HS_EIF3F Genevestigator:O00303 GermOnline:ENSG00000175390
Uniprot:O00303
Length = 357
Score = 408 (148.7 bits), Expect = 2.8e-40, Sum P(2) = 2.8e-40
Identities = 80/203 (39%), Positives = 126/203 (62%)
Query: 63 KVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIE 122
++HP+++ +I D Y RR + A RVIGTLLG+V +V++ N + VPHNE D+VA+D+E
Sbjct: 93 RLHPVILASIVDSYERRNEGAARVIGTLLGTV-DKHSVEVTNCFSVPHNESEDEVAVDME 151
Query: 123 YHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEG 182
+ M + H KV+P E+I+GW++TG +T S LIHE+Y RE PNP+HLTVDT +NG
Sbjct: 152 FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRM 211
Query: 183 TVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTS-----VDKLPSDLEG 237
++KAYVS + + R + F + + + ER+G D++ T V L SDL+
Sbjct: 212 SIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQ 271
Query: 238 MEVLMERLLTLINDIYKYVDDTV 260
+ R+ ++ + +Y +D +
Sbjct: 272 VGGASARIQDALSTVLQYAEDVL 294
Score = 37 (18.1 bits), Expect = 2.8e-40, Sum P(2) = 2.8e-40
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 245 LLTLINDIYKYVDDTVVSMI 264
L++L+N + K V D +M+
Sbjct: 308 LMSLVNQVPKIVPDDFETML 327
>UNIPROTKB|A5A6I3 [details] [associations]
symbol:EIF3F "Eukaryotic translation initiation factor 3
subunit F" species:9598 "Pan troglodytes" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000555
Pfam:PF01398 SMART:SM00232 GO:GO:0006413 GO:GO:0008234
GO:GO:0006508 GO:GO:0003743 eggNOG:COG1310 GO:GO:0005852
InterPro:IPR024969 Pfam:PF13012 KO:K03249 HAMAP:MF_03005
HOGENOM:HOG000241154 CTD:8665 HOVERGEN:HBG107843 OrthoDB:EOG44XJHN
EMBL:AB222111 RefSeq:NP_001104282.1 UniGene:Ptr.2608
ProteinModelPortal:A5A6I3 STRING:A5A6I3 GeneID:451007
KEGG:ptr:451007 InParanoid:A5A6I3 NextBio:20833681 Uniprot:A5A6I3
Length = 361
Score = 408 (148.7 bits), Expect = 2.8e-40, Sum P(2) = 2.8e-40
Identities = 80/203 (39%), Positives = 126/203 (62%)
Query: 63 KVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIE 122
++HP+++ +I D Y RR + A RVIGTLLG+V +V++ N + VPHNE D+VA+D+E
Sbjct: 97 RLHPVILASIVDSYERRNEGAARVIGTLLGTV-DKHSVEVTNCFSVPHNESEDEVAVDME 155
Query: 123 YHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEG 182
+ M + H KV+P E+I+GW++TG +T S LIHE+Y RE PNP+HLTVDT +NG
Sbjct: 156 FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRM 215
Query: 183 TVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTS-----VDKLPSDLEG 237
++KAYVS + + R + F + + + ER+G D++ T V L SDL+
Sbjct: 216 SIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQ 275
Query: 238 MEVLMERLLTLINDIYKYVDDTV 260
+ R+ ++ + +Y +D +
Sbjct: 276 VGGASARIQDALSTVLQYAEDVL 298
Score = 37 (18.1 bits), Expect = 2.8e-40, Sum P(2) = 2.8e-40
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 245 LLTLINDIYKYVDDTVVSMI 264
L++L+N + K V D +M+
Sbjct: 312 LMSLVNQVPKIVPDDFETML 331
>UNIPROTKB|Q4R5B8 [details] [associations]
symbol:EIF3F "Eukaryotic translation initiation factor 3
subunit F" species:9541 "Macaca fascicularis" [GO:0005852
"eukaryotic translation initiation factor 3 complex" evidence=ISS]
[GO:0006413 "translational initiation" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 GO:GO:0006413
GO:GO:0008234 GO:GO:0006508 GO:GO:0003743 GO:GO:0005852
InterPro:IPR024969 Pfam:PF13012 HAMAP:MF_03005 MEROPS:M67.974
HOVERGEN:HBG107843 OrthoDB:EOG44XJHN EMBL:AB169626
ProteinModelPortal:Q4R5B8 Uniprot:Q4R5B8
Length = 361
Score = 408 (148.7 bits), Expect = 2.8e-40, Sum P(2) = 2.8e-40
Identities = 80/203 (39%), Positives = 126/203 (62%)
Query: 63 KVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIE 122
++HP+++ +I D Y RR + A RVIGTLLG+V +V++ N + VPHNE D+VA+D+E
Sbjct: 97 RLHPVILASIVDSYERRNEGAARVIGTLLGTV-DKHSVEVTNCFSVPHNESEDEVAVDME 155
Query: 123 YHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEG 182
+ M + H KV+P E+I+GW++TG +T S LIHE+Y RE PNP+HLTVDT +NG
Sbjct: 156 FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRM 215
Query: 183 TVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTS-----VDKLPSDLEG 237
++KAYVS + + R + F + + + ER+G D++ T V L SDL+
Sbjct: 216 SIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQ 275
Query: 238 MEVLMERLLTLINDIYKYVDDTV 260
+ R+ ++ + +Y +D +
Sbjct: 276 VGGASARIQDALSTVLQYAEDVL 298
Score = 37 (18.1 bits), Expect = 2.8e-40, Sum P(2) = 2.8e-40
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 245 LLTLINDIYKYVDDTVVSMI 264
L++L+N + K V D +M+
Sbjct: 312 LMSLVNQVPKIVPDDFETML 331
>UNIPROTKB|E1BLZ8 [details] [associations]
symbol:EIF3F "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005852 "eukaryotic translation initiation factor 3
complex" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 GO:GO:0003743 GO:GO:0005852 InterPro:IPR024969
Pfam:PF13012 GeneTree:ENSGT00530000063075 EMBL:DAAA02040761
IPI:IPI00837929 Ensembl:ENSBTAT00000049219 OMA:HHETMYE
Uniprot:E1BLZ8
Length = 384
Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
Identities = 80/203 (39%), Positives = 126/203 (62%)
Query: 63 KVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIE 122
++HP+++ +I D Y RR + A RVIGTLLG+V +V++ N + VPHNE D+VA+D+E
Sbjct: 120 RLHPVILASIVDSYERRNEGAARVIGTLLGTV-DKHSVEVTNCFSVPHNESEDEVAVDME 178
Query: 123 YHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEG 182
+ M + H KV+P E+I+GW++TG +T S LIHE+Y RE PNP+HLTVDT +NG
Sbjct: 179 FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRM 238
Query: 183 TVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTS-----VDKLPSDLEG 237
++KAYVS + + R + F + + + ER+G D++ T V L SDL+
Sbjct: 239 SIKAYVSTLMGVPGRTMGVMFTPLTVKYTYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQ 298
Query: 238 MEVLMERLLTLINDIYKYVDDTV 260
+ R+ ++ + +Y +D +
Sbjct: 299 VGGASARIQDALSTVLQYAEDVL 321
>DICTYBASE|DDB_G0293254 [details] [associations]
symbol:eif3F "eukaryotic translation initiation
factor 3 (eIF3) subunit 5" species:44689 "Dictyostelium discoideum"
[GO:0005852 "eukaryotic translation initiation factor 3 complex"
evidence=ISS] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
dictyBase:DDB_G0293254 GenomeReviews:CM000155_GR EMBL:AAFI02000200
GO:GO:0003743 eggNOG:COG1310 GO:GO:0005852 InterPro:IPR024969
Pfam:PF13012 KO:K03249 OMA:HPVVLFQ HAMAP:MF_03005
RefSeq:XP_629217.1 ProteinModelPortal:Q54C49 STRING:Q54C49
PRIDE:Q54C49 EnsemblProtists:DDB0233924 GeneID:8629099
KEGG:ddi:DDB_G0293254 ProtClustDB:CLSZ2429292 Uniprot:Q54C49
Length = 284
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 86/207 (41%), Positives = 129/207 (62%)
Query: 58 SNVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQV 117
S VT KVHP+VIFNI D Y+RR +RVIGTLLG DG ++IRN + V H+E ++Q+
Sbjct: 11 SQVTVKVHPVVIFNILDHYIRRNVGQDRVIGTLLG-FNNDGVLEIRNCFPVVHSE-TEQI 68
Query: 118 ALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPN--PVHLTVDT 175
A+++EY ML HLK +P+E I+GW++TG + S I+ FY E+ N P+HLTVDT
Sbjct: 69 AVEMEYQRKMLDLHLKSSPREPIIGWYATGNDINENSVHINNFYRDEMGNSTPIHLTVDT 128
Query: 176 GFRNGEGTVKAYVSVNLSLG-DRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDK---- 230
G N + AY++ NLSL + L + F ++PL++ EAE G + + T D+
Sbjct: 129 GLTNDTMGIHAYMAHNLSLNPESSLGSYFSQLPLEILTFEAENAGLESIAQTKYDQQSTS 188
Query: 231 LPSDLEGMEVLMERLLTLINDIYKYVD 257
L S+LE ++ + +L ++ I Y++
Sbjct: 189 LLSELESLQGSLTKLDEMLESITSYIE 215
>FB|FBgn0037270 [details] [associations]
symbol:CG9769 species:7227 "Drosophila melanogaster"
[GO:0005852 "eukaryotic translation initiation factor 3 complex"
evidence=ISS] [GO:0006413 "translational initiation" evidence=ISS]
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0048102 "autophagic cell death" evidence=IEP] [GO:0035071
"salivary gland cell autophagic cell death" evidence=IEP]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 EMBL:AE014297
GO:GO:0035071 GO:GO:0003743 eggNOG:COG1310 GO:GO:0005852
InterPro:IPR024969 Pfam:PF13012 GeneTree:ENSGT00530000063075
EMBL:AY118972 RefSeq:NP_649489.1 UniGene:Dm.11029
ProteinModelPortal:Q9VN50 SMR:Q9VN50 IntAct:Q9VN50 MINT:MINT-891663
STRING:Q9VN50 MEROPS:M67.975 PaxDb:Q9VN50 PRIDE:Q9VN50
EnsemblMetazoa:FBtr0078892 GeneID:40587 KEGG:dme:Dmel_CG9769
UCSC:CG9769-RA FlyBase:FBgn0037270 InParanoid:Q9VN50 KO:K03249
OMA:HPVVLFQ OrthoDB:EOG43TXBB PhylomeDB:Q9VN50 ChiTaRS:CG9769
GenomeRNAi:40587 NextBio:819523 Bgee:Q9VN50 HAMAP:MF_03005
Uniprot:Q9VN50
Length = 280
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 85/215 (39%), Positives = 121/215 (56%)
Query: 59 NVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVA 118
N+T +VHP+V+F + D + RR + RVIGTLLGSV G V++ N + VPH E DQV
Sbjct: 5 NLTVRVHPVVLFQVVDAFERRNADSHRVIGTLLGSV-DKGVVEVTNCFCVPHKEHDDQVE 63
Query: 119 LDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFR 178
++ Y M + KVN E +VGW++TG VT S++IHE+Y RE NPVHLTVDT +
Sbjct: 64 AELSYALDMYDLNRKVNSNESVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQ 123
Query: 179 NGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKST---SVDKLPS-- 233
G ++AYV + L + + F IP++L E E G +L+ T S P
Sbjct: 124 GGRMGLRAYVCIQLGVPGGKSGCMFTPIPVELTSYEPETFGLKLLQKTVGVSPAHRPKTV 183
Query: 234 ----DLEGMEVLMERLLTLINDIYKYVDDTVVSMI 264
DL + +L +L++ I KYVDD + +
Sbjct: 184 PPMLDLAQISEASTKLQSLLDLILKYVDDVIAHKV 218
>UNIPROTKB|E1C050 [details] [associations]
symbol:EIF3F "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0005852 "eukaryotic translation initiation factor
3 complex" evidence=IEA] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 GO:GO:0003743 GO:GO:0005852 InterPro:IPR024969
Pfam:PF13012 GeneTree:ENSGT00530000063075 KO:K03249 OMA:HPVVLFQ
CTD:8665 EMBL:AC140789 IPI:IPI00578336 RefSeq:XP_421624.1
PRIDE:E1C050 Ensembl:ENSGALT00000008544 GeneID:423748
KEGG:gga:423748 NextBio:20826172 Uniprot:E1C050
Length = 332
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 82/219 (37%), Positives = 128/219 (58%)
Query: 52 PSSAATSNV-----TAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSY 106
P SAA S ++HP+V+ +I D + RR + A RVIGTLLG+V +V++ N +
Sbjct: 52 PLSAALSGPFPGGRVVRLHPVVLASIVDSFERRNEGAARVIGTLLGTV-DKHSVEVTNCF 110
Query: 107 VVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVP 166
VPHNE D+VA+D+E+ M + H KV+P E+I+GW++TG +T S LIHE+Y RE
Sbjct: 111 SVPHNESEDEVAVDMEFAKNMYELHKKVSPSEIILGWYATGHDITEHSVLIHEYYSREAH 170
Query: 167 NPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKST 226
NP+HLTVDT +N ++KAYVS + + + + F + + + ER+G D++ T
Sbjct: 171 NPIHLTVDTSLQNSRMSIKAYVSAPMGVPGKTMGVMFTPLTVKYVYYDTERIGVDLIMKT 230
Query: 227 S-----VDKLPSDLEGMEVLMERLLTLINDIYKYVDDTV 260
V L SDL+ + R+ + + +Y +D +
Sbjct: 231 CFSPNRVIGLSSDLQQVGSASARIQDTLGMVLQYAEDVL 269
>ASPGD|ASPL0000055955 [details] [associations]
symbol:AN10182 species:162425 "Emericella nidulans"
[GO:0006413 "translational initiation" evidence=IEA] [GO:0016282
"eukaryotic 43S preinitiation complex" evidence=IEA] [GO:0071541
"eukaryotic translation initiation factor 3 complex, eIF3m"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0071540
"eukaryotic translation initiation factor 3 complex, eIF3e"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 EMBL:BN001308 GO:GO:0003743 InterPro:IPR024969
Pfam:PF13012 OMA:HPVVLFQ HOGENOM:HOG000241154
EnsemblFungi:CADANIAT00001258 Uniprot:C8VRX6
Length = 345
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 82/222 (36%), Positives = 129/222 (58%)
Query: 53 SSAATSNVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHN 111
S+ T+ + + P +F+I D +RR ERVIGTLLG+ DGT V+IR+++ V H
Sbjct: 21 SAPTTAPLNVVIQPQALFSILDHSLRRNADQERVIGTLLGTRSEDGTEVEIRSTFAVGHT 80
Query: 112 EFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREV----PN 167
E +DQV +D+EY ML HLK NP+EV+VGW++T + SALI FY + P+
Sbjct: 81 ETTDQVEVDMEYQKQMLALHLKANPREVLVGWYATSSELNTFSALIQNFYSGQGDGTWPH 140
Query: 168 P-VHLTVDTGFRNGEGT-VKAYVSVNLSLGDRQLA--AQFQEIPLDLRMIEAERVGFDIL 223
P VHLTV T G+ +AY+S + + + A A F +P ++R EAE+ G + +
Sbjct: 141 PAVHLTVST--EPGKDIETRAYISAPVGVTAERAADSAAFIPVPHEIRYGEAEKSGLEAI 198
Query: 224 KST--SVDKLPS---DLEGMEVLMERLLTLINDIYKYVDDTV 260
+ S ++ S D+E +E +E +L +I+ + +YV+ +
Sbjct: 199 AAARDSEERSTSLFTDIEALERAIEEVLGMIDRVSRYVESVI 240
>POMBASE|SPBC4C3.07 [details] [associations]
symbol:SPBC4C3.07 "translation initiation factor eIF3f"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0004843
"ubiquitin-specific protease activity" evidence=ISM] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IDA] [GO:0006413
"translational initiation" evidence=IMP] [GO:0016282 "eukaryotic
43S preinitiation complex" evidence=IDA] [GO:0071540 "eukaryotic
translation initiation factor 3 complex, eIF3e" evidence=IDA]
[GO:0071541 "eukaryotic translation initiation factor 3 complex,
eIF3m" evidence=IDA] [GO:0003743 "translation initiation factor
activity" evidence=IC] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 PomBase:SPBC4C3.07 GO:GO:0005829 GO:GO:0005634
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003743
eggNOG:COG1310 GO:GO:0004843 GO:GO:0002183 InterPro:IPR024969
Pfam:PF13012 KO:K03249 OMA:HPVVLFQ HAMAP:MF_03005 GO:GO:0016282
GO:GO:0071540 GO:GO:0071541 HOGENOM:HOG000241154 OrthoDB:EOG4RZ28G
PIR:T40490 RefSeq:NP_596298.1 ProteinModelPortal:O43060
STRING:O43060 EnsemblFungi:SPBC4C3.07.1 GeneID:2540868
KEGG:spo:SPBC4C3.07 NextBio:20801984 Uniprot:O43060
Length = 302
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 81/239 (33%), Positives = 125/239 (52%)
Query: 40 MAASDRTVLQFGPSSAATSNVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGT 99
MA + VL S+ +S + + P V+F+I D R+ + +RVIGTLLG+ DG
Sbjct: 1 MALGTKHVLHLTKPSSRSSPLNIVIEPAVLFSILDHSTRKSENNQRVIGTLLGTRSEDGR 60
Query: 100 -VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIH 158
++I++ + VPHNE S+QV +++EYH M HLK NP+EV+VGW++T + SALI
Sbjct: 61 EIEIKSCFAVPHNESSEQVEVEMEYHRAMYHLHLKANPREVVVGWYATSPDLDAFSALIQ 120
Query: 159 EFYCREV----------PNP-VHLTVDTGFRNGEGTVKAYVSVNLSLGDRQL-AAQFQEI 206
Y P+P VHLTV+T + +K YVS + + +R + F
Sbjct: 121 NLYASPAEPGTAPLGTYPHPCVHLTVNTDV-SSPLAIKTYVSSPVGITERLADSCAFVPT 179
Query: 207 PLDLRMIEAERVGFDILKSTSVD--KLPS---DLEGMEVLMERLLTLINDIYKYVDDTV 260
P +R EA R G + + D +L S DL+ + LL++I + YV + +
Sbjct: 180 PFTIRDDEAVRSGLKAVAAPKNDPSRLASLFTDLQQLRRSTLELLSMIERVSDYVQNVI 238
>UNIPROTKB|B4DEW9 [details] [associations]
symbol:EIF3F "Eukaryotic translation initiation factor 3
subunit F" species:9606 "Homo sapiens" [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 GO:GO:0003743
GO:GO:0005852 InterPro:IPR024969 Pfam:PF13012 UniGene:Hs.516023
HGNC:HGNC:3275 HOVERGEN:HBG107843 EMBL:AC044810 EMBL:AC116456
EMBL:AK293826 IPI:IPI01013021 ProteinModelPortal:B4DEW9 SMR:B4DEW9
STRING:B4DEW9 PRIDE:B4DEW9 Ensembl:ENST00000449102
ArrayExpress:B4DEW9 Bgee:B4DEW9 Uniprot:B4DEW9
Length = 208
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 52/145 (35%), Positives = 84/145 (57%)
Query: 121 IEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNG 180
+E+ M + H KV+P E+I+GW++TG +T S LIHE+Y RE PNP+HLTVDT +NG
Sbjct: 1 MEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNG 60
Query: 181 EGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTS-----VDKLPSDL 235
++KAYVS + + R + F + + + ER+G D++ T V L SDL
Sbjct: 61 RMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDL 120
Query: 236 EGMEVLMERLLTLINDIYKYVDDTV 260
+ + R+ ++ + +Y +D +
Sbjct: 121 QQVGGASARIQDALSTVLQYAEDVL 145
>FB|FBgn0033069 [details] [associations]
symbol:CG8335 species:7227 "Drosophila melanogaster"
[GO:0006413 "translational initiation" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005852
"eukaryotic translation initiation factor 3 complex" evidence=ISS]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 EMBL:AE013599
GO:GO:0003743 eggNOG:COG1310 GO:GO:0005852 InterPro:IPR024969
Pfam:PF13012 HAMAP:MF_03005 RefSeq:NP_610210.2
ProteinModelPortal:A1Z6K7 SMR:A1Z6K7 IntAct:A1Z6K7 STRING:A1Z6K7
GeneID:35547 KEGG:dme:Dmel_CG8335 UCSC:CG8335-RA
FlyBase:FBgn0033069 InParanoid:A1Z6K7 OMA:ITLSTMI OrthoDB:EOG41G1M1
GenomeRNAi:35547 NextBio:793971 Bgee:A1Z6K7 Uniprot:A1Z6K7
Length = 285
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 61/205 (29%), Positives = 107/205 (52%)
Query: 59 NVTAKVH--PLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSD- 115
++ AKV+ PLV F I D Y RRP +V+GTLLG +G ++I N + VPH E S+
Sbjct: 6 SMRAKVYLKPLVFFQIIDAYDRRPKGDNQVMGTLLGRN-KEGHIEITNCFTVPHKEHSEN 64
Query: 116 -QVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREV--PNPVHLT 172
++ LD+ Y +L+ ++ P E ++GWF TG V+ ++LIH++Y RE P+HL
Sbjct: 65 KRIDLDMAYASEVLELNMFAYPNERVLGWFCTGKSVSRSASLIHDYYVRECCEGQPLHLL 124
Query: 173 VDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLP 232
VD +N + + Y +V + + F +PL++ ++ V ++ S +
Sbjct: 125 VDAALKNQRLSTRLYCAVEMGVPGGTKGLMFSLVPLEISNENSDLVALRCIEKQSQQQAS 184
Query: 233 SDLEGMEVLMERLLTLINDIYKYVD 257
+E + +++ D+ +D
Sbjct: 185 KQMERFVPELAQVVDATRDMQHRLD 209
>TAIR|locus:2074653 [details] [associations]
symbol:MEE34 "AT3G11270" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008541 "proteasome regulatory
particle, lid subcomplex" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0005634 "nucleus" evidence=TAS] [GO:0030163 "protein catabolic
process" evidence=TAS] [GO:0009793 "embryo development ending in
seed dormancy" evidence=IMP] [GO:0000502 "proteasome complex"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0009407 "toxin catabolic process" evidence=RCA] [GO:0010162
"seed dormancy process" evidence=RCA] [GO:0010564 "regulation of
cell cycle process" evidence=RCA] [GO:0042023 "DNA
endoreduplication" evidence=RCA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=RCA]
[GO:0043248 "proteasome assembly" evidence=RCA] [GO:0048366 "leaf
development" evidence=RCA] [GO:0048825 "cotyledon development"
evidence=RCA] [GO:0051510 "regulation of unidimensional cell
growth" evidence=RCA] [GO:0051788 "response to misfolded protein"
evidence=RCA] [GO:0080129 "proteasome core complex assembly"
evidence=RCA] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009793
GO:GO:0030163 GO:GO:0000502 EMBL:AC073395 InterPro:IPR024969
Pfam:PF13012 KO:K03038 HOGENOM:HOG000209236 ProtClustDB:PLN03246
MEROPS:M67.973 EMBL:AY258412 EMBL:AK228032 IPI:IPI00536063
RefSeq:NP_187736.1 UniGene:At.39785 ProteinModelPortal:Q9C774
SMR:Q9C774 IntAct:Q9C774 STRING:Q9C774 PRIDE:Q9C774 DNASU:820298
EnsemblPlants:AT3G11270.1 GeneID:820298 KEGG:ath:AT3G11270
TAIR:At3g11270 InParanoid:Q9C774 OMA:INAKEHI PhylomeDB:Q9C774
Genevestigator:Q9C774 Uniprot:Q9C774
Length = 310
Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 67/204 (32%), Positives = 103/204 (50%)
Query: 64 VHPLVIFNICDCYVR-RPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVA---L 119
VHPLV+ +I D Y R D ++RV+G LLGS GTVD+ NSY VP E + L
Sbjct: 19 VHPLVLLSIVDHYNRVAKDTSKRVVGVLLGSS-SRGTVDVTNSYAVPFEEDDKDTSIWFL 77
Query: 120 DIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRN 179
D YH +M ++N +E IVGW+STG + +H + VPNPV + +D +
Sbjct: 78 DHNYHESMFHMFKRINAKEHIVGWYSTGPKLRENDLDVHALFNGYVPNPVLVIIDVQPKE 137
Query: 180 GEGTVKAYVSVN-LSLGDRQLAAQ-FQEIPLDLRMIEAERVGFDIL----KSTSVDKLPS 233
KAY +V + Q + Q F +P ++ E E +G + L K T++ L +
Sbjct: 138 LGIPTKAYYAVEEVKENATQKSQQVFVHVPTEIAAHEVEEIGVEHLLRDVKDTTISTLAT 197
Query: 234 DLEGMEVLMERLLTLINDIYKYVD 257
++ ++ L + +I Y+D
Sbjct: 198 EVTAKLTALKGLDARLREIRTYLD 221
>DICTYBASE|DDB_G0279633 [details] [associations]
symbol:psmD7 "26S proteasome non-ATPase regulatory
subunit 7" species:44689 "Dictyostelium discoideum" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0005838 "proteasome regulatory particle" evidence=ISS]
[GO:0000502 "proteasome complex" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 dictyBase:DDB_G0279633 GenomeReviews:CM000152_GR
GO:GO:0006511 EMBL:AAFI02000032 eggNOG:COG1310 InterPro:IPR024969
Pfam:PF13012 KO:K03038 GO:GO:0005838 OMA:RSIIALH MEROPS:M67.973
RefSeq:XP_641565.1 ProteinModelPortal:Q54WI8 SMR:Q54WI8
STRING:Q54WI8 EnsemblProtists:DDB0232987 GeneID:8622140
KEGG:ddi:DDB_G0279633 ProtClustDB:CLSZ2434496 Uniprot:Q54WI8
Length = 325
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 65/213 (30%), Positives = 110/213 (51%)
Query: 53 SSAATSNVTAKVHPLVIFNICDCYVR-RPDQAERVIGTLLGSVLPDGTVDIRNSYVVP-- 109
S+ TS + VHP V+ ++ D Y R D +RV+G LLGS G VD+ N Y +P
Sbjct: 2 STFPTSTI---VHPTVLLSVVDHYNRVAKDTNKRVVGALLGSN-NKGVVDVSNCYGLPFE 57
Query: 110 HNEFSDQV-ALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNP 168
+E + + LD +H M K+N +E +VGW+STG + I+E + R PNP
Sbjct: 58 EDEANPNIWFLDHNFHENMFAMFKKINARENVVGWYSTGPKIRPADQDINELFRRYTPNP 117
Query: 169 VHLTVDTGFRNGEGTVKAYVSVN-LSLGDRQLAAQFQEIPLDLRMIEAERVGFDIL---- 223
V + +D + K+YV+V ++ + +FQ IP + +EAE + + L
Sbjct: 118 VMVIIDVAPKELGIPTKSYVTVEEINKDTSESTMRFQHIPSSIDAVEAEEICIEHLLRDV 177
Query: 224 KSTSVDKLPSDLEGMEVLMERLLTLINDIYKYV 256
K +S+ L + + ++ ++ LLT + ++ Y+
Sbjct: 178 KDSSISSLTTQITDKKISLKHLLTNLQEMQHYL 210
>UNIPROTKB|A4R0E5 [details] [associations]
symbol:MGG_10653 "Eukaryotic translation initiation factor
3 subunit F" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
GO:GO:0005737 GO:GO:0003743 EMBL:CM001231 eggNOG:COG1310
InterPro:IPR024969 Pfam:PF13012 KO:K03249 HAMAP:MF_03005
RefSeq:XP_003710082.1 ProteinModelPortal:A4R0E5 STRING:A4R0E5
EnsemblFungi:MGG_10653T0 GeneID:2682266 KEGG:mgr:MGG_10653
OrthoDB:EOG4RZ28G Uniprot:A4R0E5
Length = 370
Score = 236 (88.1 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 68/220 (30%), Positives = 115/220 (52%)
Query: 54 SAATSNVTAKVHPLVIFNICDCYVRRP--D-QAERVIGTLLGSVLPDGT-VDIRNSYVVP 109
+A + +T + P I +I D VRR D QA RVIG L+G DGT V++R+++ +P
Sbjct: 23 NANVAPLTVTIQPQAILSILDHAVRRDIRDTQATRVIGALVGVRSEDGTDVEVRSTFAIP 82
Query: 110 HNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCRE----V 165
H E DQV +D+EY ML LK +P+E ++GW++T + SALI F+
Sbjct: 83 HTENEDQVEVDVEYQKNMLALTLKASPRESLLGWYTTSHELNSFSALIQNFFASPETGTF 142
Query: 166 PNP-VHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQ--FQEIPLDLRMI-EAERVGFD 221
P+P VHLT+ T + + Y+S ++ + A F ++P E++R +
Sbjct: 143 PHPAVHLTMSTD-PGADIEPRCYISAPAAVSPDRAAESCFFIQVPHRTPPTNESDRAALE 201
Query: 222 ILKSTSVDKL---P--SDLEGMEVLMERLLTLINDIYKYV 256
+ + D+ P SD+E + +E+ + +++ +YV
Sbjct: 202 AIAAGKDDEARTAPVLSDVEALARSLEQTIDMLDRTSEYV 241
>TAIR|locus:2166449 [details] [associations]
symbol:RPN8A "AT5G05780" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008541 "proteasome regulatory
particle, lid subcomplex" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0009965 "leaf morphogenesis" evidence=IMP] [GO:0000502
"proteasome complex" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0042023 "DNA endoreduplication" evidence=RCA]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=RCA] [GO:0043248 "proteasome assembly"
evidence=RCA] [GO:0051510 "regulation of unidimensional cell
growth" evidence=RCA] [GO:0051788 "response to misfolded protein"
evidence=RCA] [GO:0080129 "proteasome core complex assembly"
evidence=RCA] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
GO:GO:0005829 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000502
GO:GO:0009965 eggNOG:COG1310 EMBL:AB005237 InterPro:IPR024969
Pfam:PF13012 KO:K03038 EMBL:U54560 EMBL:AF378878 EMBL:BT002610
EMBL:AY087393 IPI:IPI00538047 RefSeq:NP_196197.1 UniGene:At.20537
UniGene:At.67787 ProteinModelPortal:O24412 SMR:O24412 IntAct:O24412
STRING:O24412 PaxDb:O24412 PRIDE:O24412 EnsemblPlants:AT5G05780.1
GeneID:830463 KEGG:ath:AT5G05780 TAIR:At5g05780
HOGENOM:HOG000209236 InParanoid:O24412 OMA:RSIIALH PhylomeDB:O24412
ProtClustDB:PLN03246 Genevestigator:O24412 GermOnline:AT5G05780
Uniprot:O24412
Length = 308
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 63/204 (30%), Positives = 100/204 (49%)
Query: 64 VHPLVIFNICDCYVR-RPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVA---L 119
VHPLV+ +I D Y R D ++RV+G LLGS G VD+ NSY VP E + L
Sbjct: 19 VHPLVLLSIVDHYNRVAKDSSKRVVGVLLGSS-SRGVVDVTNSYAVPFEEDDKDPSIWFL 77
Query: 120 DIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRN 179
D YH +M ++N +E +VGW+STG + +H + VPNPV + +D +
Sbjct: 78 DHNYHESMFHMFKRINAKEHVVGWYSTGPKLRENDLDVHALFNGYVPNPVLVIIDVQPKE 137
Query: 180 GEGTVKAYVSVNLSLGDRQLAAQ--FQEIPLDLRMIEAERVGFDIL----KSTSVDKLPS 233
KAY +V + +Q F + ++ E E +G + L K T++ L +
Sbjct: 138 LGIPTKAYYAVEEVKENATQKSQKVFVHVSTEIAAHEVEEIGVEHLLRDVKDTTISTLAT 197
Query: 234 DLEGMEVLMERLLTLINDIYKYVD 257
++ ++ L + +I Y+D
Sbjct: 198 EVTAKLTALKGLDARLREIRSYLD 221
>WB|WBGene00004464 [details] [associations]
symbol:rpn-8 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0000003 eggNOG:COG1310 InterPro:IPR024969
Pfam:PF13012 GeneTree:ENSGT00530000063075 EMBL:FO080613 KO:K03038
HOGENOM:HOG000209236 OMA:RSIIALH MEROPS:M67.973 PIR:T33096
RefSeq:NP_491319.1 ProteinModelPortal:O61792 SMR:O61792
IntAct:O61792 MINT:MINT-210994 STRING:O61792 PaxDb:O61792
EnsemblMetazoa:R12E2.3.1 EnsemblMetazoa:R12E2.3.2 GeneID:172009
KEGG:cel:CELE_R12E2.3 UCSC:R12E2.3.1 CTD:172009 WormBase:R12E2.3
InParanoid:O61792 NextBio:873645 Uniprot:O61792
Length = 362
Score = 228 (85.3 bits), Expect = 7.9e-19, P = 7.9e-19
Identities = 66/207 (31%), Positives = 102/207 (49%)
Query: 64 VHPLVIFNICDCY--VRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVA--- 118
VHPLV+ ++ D + V + +RV+G LLGS+ D T+DI NS+ VP +E +
Sbjct: 43 VHPLVLLSVVDHFNRVSKTQSVKRVVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKSTWF 102
Query: 119 LDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFR 178
LD++Y +M KV +E IVGW+ TG + I+E R PNPV + +D +
Sbjct: 103 LDMDYLESMYGMFYKVAAKEKIVGWYHTGPKLHKNDIAINEQLKRFCPNPVLVIIDAEPK 162
Query: 179 NGEGTVKAYVSVNLSLGDRQLAAQ-FQEIPLDLRMIEAERVGFDIL----KSTSVDKLPS 233
N +AY+ V D + F+ +P D+ EAE VG + L K + L
Sbjct: 163 NIGLPTEAYIEVQEVHDDGTPPIKTFEHVPSDIGAEEAEEVGVEHLLRDIKDQTAGTLSQ 222
Query: 234 DLEGMEVLMERLLTLINDIYKYVDDTV 260
+ + + L + + I KY+ D V
Sbjct: 223 RITDQLMGLRGLQSQLESIEKYLHDIV 249
>UNIPROTKB|O61792 [details] [associations]
symbol:rpn-8 "Protein RPN-8" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 GO:GO:0008340
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0000003
eggNOG:COG1310 InterPro:IPR024969 Pfam:PF13012
GeneTree:ENSGT00530000063075 EMBL:FO080613 KO:K03038
HOGENOM:HOG000209236 OMA:RSIIALH MEROPS:M67.973 PIR:T33096
RefSeq:NP_491319.1 ProteinModelPortal:O61792 SMR:O61792
IntAct:O61792 MINT:MINT-210994 STRING:O61792 PaxDb:O61792
EnsemblMetazoa:R12E2.3.1 EnsemblMetazoa:R12E2.3.2 GeneID:172009
KEGG:cel:CELE_R12E2.3 UCSC:R12E2.3.1 CTD:172009 WormBase:R12E2.3
InParanoid:O61792 NextBio:873645 Uniprot:O61792
Length = 362
Score = 228 (85.3 bits), Expect = 7.9e-19, P = 7.9e-19
Identities = 66/207 (31%), Positives = 102/207 (49%)
Query: 64 VHPLVIFNICDCY--VRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVA--- 118
VHPLV+ ++ D + V + +RV+G LLGS+ D T+DI NS+ VP +E +
Sbjct: 43 VHPLVLLSVVDHFNRVSKTQSVKRVVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKSTWF 102
Query: 119 LDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFR 178
LD++Y +M KV +E IVGW+ TG + I+E R PNPV + +D +
Sbjct: 103 LDMDYLESMYGMFYKVAAKEKIVGWYHTGPKLHKNDIAINEQLKRFCPNPVLVIIDAEPK 162
Query: 179 NGEGTVKAYVSVNLSLGDRQLAAQ-FQEIPLDLRMIEAERVGFDIL----KSTSVDKLPS 233
N +AY+ V D + F+ +P D+ EAE VG + L K + L
Sbjct: 163 NIGLPTEAYIEVQEVHDDGTPPIKTFEHVPSDIGAEEAEEVGVEHLLRDIKDQTAGTLSQ 222
Query: 234 DLEGMEVLMERLLTLINDIYKYVDDTV 260
+ + + L + + I KY+ D V
Sbjct: 223 RITDQLMGLRGLQSQLESIEKYLHDIV 249
>FB|FBgn0002787 [details] [associations]
symbol:Rpn8 "Regulatory particle non-ATPase 8" species:7227
"Drosophila melanogaster" [GO:0004175 "endopeptidase activity"
evidence=NAS;IDA] [GO:0000502 "proteasome complex"
evidence=NAS;IDA] [GO:0008541 "proteasome regulatory particle, lid
subcomplex" evidence=ISS;NAS] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=NAS] [GO:0005838 "proteasome
regulatory particle" evidence=ISS;IDA] [GO:0006508 "proteolysis"
evidence=ISS;IDA] [GO:0009987 "cellular process" evidence=IMP]
[GO:0030425 "dendrite" evidence=IMP] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0000022 "mitotic spindle
elongation" evidence=IMP] [GO:0007052 "mitotic spindle
organization" evidence=IMP] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
EMBL:AE013599 GO:GO:0022008 GO:GO:0008283 GO:GO:0030425
GO:GO:0006508 GO:GO:0004175 GO:GO:0008541 eggNOG:COG1310
GO:GO:0000022 InterPro:IPR024969 Pfam:PF13012
GeneTree:ENSGT00530000063075 KO:K03038 BRENDA:3.4.25.1 OMA:RSIIALH
MEROPS:M67.973 EMBL:M64643 EMBL:AY089283 RefSeq:NP_523845.2
UniGene:Dm.770 ProteinModelPortal:P26270 SMR:P26270 DIP:DIP-22847N
IntAct:P26270 MINT:MINT-819762 STRING:P26270 PaxDb:P26270
EnsemblMetazoa:FBtr0072290 EnsemblMetazoa:FBtr0332921 GeneID:37894
KEGG:dme:Dmel_CG3416 UCSC:CG3416-RA CTD:37894 FlyBase:FBgn0002787
InParanoid:P26270 OrthoDB:EOG4BG7BS PhylomeDB:P26270
GenomeRNAi:37894 NextBio:805917 Bgee:P26270 GermOnline:CG3416
Uniprot:P26270
Length = 338
Score = 214 (80.4 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 64/215 (29%), Positives = 104/215 (48%)
Query: 52 PSSAATSNVTAKVHPLVIFNICDCYVR--RPDQAERVIGTLLGSVLPDGTVDIRNSYVVP 109
PS + N VHPLV+ ++ D + R + +RV+G LLG G +D+ NS+ VP
Sbjct: 2 PSQEVSVNKVI-VHPLVLLSVVDHFNRMGKIGNQKRVVGVLLGCWRSKGVLDVSNSFAVP 60
Query: 110 HNEFSDQVA---LDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVP 166
+E + LD +Y M KVN +E +VGW+ TG + I+E R P
Sbjct: 61 FDEDDKDKSVWFLDHDYLENMYGMFKKVNARERVVGWYHTGPKLHQNDIAINELVRRYCP 120
Query: 167 NPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQ-FQEIPLDLRMIEAERVGFDIL-- 223
N V + +D ++ +AY+SV D ++ F+ +P ++ EAE VG + L
Sbjct: 121 NSVLVIIDAKPKDLGLPTEAYISVEEVHDDGSPTSKTFEHVPSEIGAEEAEEVGVEHLLR 180
Query: 224 --KSTSVDKLPSDLEGMEVLMERLLTLINDIYKYV 256
K T+V L + + ++ L + DI +Y+
Sbjct: 181 DIKDTTVGSLSQKITNQLMGLKGLNAQLRDIKQYL 215
>ZFIN|ZDB-GENE-050417-289 [details] [associations]
symbol:cops6 "COP9 constitutive photomorphogenic
homolog subunit 6 (Arabidopsis)" species:7955 "Danio rerio"
[GO:0005575 "cellular_component" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0060026 "convergent
extension" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0009953 "dorsal/ventral pattern formation"
evidence=IMP] [GO:0021551 "central nervous system morphogenesis"
evidence=IMP] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
ZFIN:ZDB-GENE-050417-289 GO:GO:0007420 GO:GO:0009953 GO:GO:0060026
GO:GO:0021551 KO:K12179 InterPro:IPR024969 Pfam:PF13012 CTD:10980
HOVERGEN:HBG107770 EMBL:BC093188 IPI:IPI00570094
RefSeq:NP_001017768.1 UniGene:Dr.42675 ProteinModelPortal:Q567F8
PRIDE:Q567F8 GeneID:550465 KEGG:dre:550465 NextBio:20879709
Uniprot:Q567F8
Length = 297
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 50/173 (28%), Positives = 91/173 (52%)
Query: 53 SSAATSNVTAKVHPLVIFNICDCYVRRPDQ---AERVIGTLLGSVLPDG-TVDIRNSYVV 108
+S T +V+ +HPLVI NI D ++R Q A +V+G L+G +G +++ NS+ +
Sbjct: 2 ASGVTGSVSVALHPLVILNISDHWIRIRSQEGRAVQVVGALIGK--QEGRNIEVMNSFEL 59
Query: 109 PHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNP 168
+ DQ+ +D EY++T + +V + +GW++TG IH+ C + +P
Sbjct: 60 LFHTVEDQIHIDKEYYYTKEEQFKQVFKEMEFLGWYTTGGSPDQSDIHIHKQVCEIIESP 119
Query: 169 VHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFD 221
+ L ++ ++ + V + SV + + + F E+P L EAER+G D
Sbjct: 120 LFLKLNPMTKHTDLPVSVFESV-IDIISGEATMLFAELPYTLATEEAERIGVD 171
>WB|WBGene00001229 [details] [associations]
symbol:eif-3.F species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
GO:GO:0008340 GO:GO:0009792 GO:GO:0006898 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0010171
GO:GO:0040035 GO:GO:0003743 eggNOG:COG1310 InterPro:IPR024969
Pfam:PF13012 GeneTree:ENSGT00530000063075 KO:K03249 OMA:HPVVLFQ
HAMAP:MF_03005 HOGENOM:HOG000241154 EMBL:Z47808 PIR:T20338
RefSeq:NP_495988.1 ProteinModelPortal:Q18967 SMR:Q18967
DIP:DIP-25689N IntAct:Q18967 MINT:MINT-1039602 STRING:Q18967
PaxDb:Q18967 EnsemblMetazoa:D2013.7.1 EnsemblMetazoa:D2013.7.2
GeneID:174478 KEGG:cel:CELE_D2013.7 UCSC:D2013.7 CTD:174478
WormBase:D2013.7 InParanoid:Q18967 NextBio:884206 Uniprot:Q18967
Length = 294
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 59/207 (28%), Positives = 101/207 (48%)
Query: 58 SNVTAKVHPLVIFNICDCYVRRPDQA------ERVIGTLLGSVLPDGTVDIRNSYVVPHN 111
SN+T VHP V N+ D ++RR + E+ +GTL+G G++ + N + +P N
Sbjct: 3 SNLTVNVHPGVYMNVVDTHMRRTKSSAKNTGQEKCMGTLMG-YYEKGSIQVTNCFAIPFN 61
Query: 112 EFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCR-------- 163
E +D + +D +++ M+ + K +P E VGWF T +T + H++Y R
Sbjct: 62 ESNDDLEIDDQFNQQMISALKKTSPNEQPVGWFLTTSDITSSCLIYHDYYVRVITEASAR 121
Query: 164 -EVPNPVHLTVDTGFRNGEGT----VKAYVSVNLSLGDRQ--LAAQFQEIPLDLRMIEAE 216
E P V LT+DT F +G+ + V+AY+ + A F + ++L E
Sbjct: 122 RESPPIVVLTIDTTF-SGDMSKRMPVRAYLRSKAGIPGAAGPHCAIFNPLRVELAAFPGE 180
Query: 217 RVGFDIL-KSTSVDKLPSDLE-GMEVL 241
V ++ K+ + + LE G+E L
Sbjct: 181 LVAMQLIEKALDSRRREATLESGLEQL 207
>MGI|MGI:1351511 [details] [associations]
symbol:Psmd7 "proteasome (prosome, macropain) 26S subunit,
non-ATPase, 7" species:10090 "Mus musculus" [GO:0000502 "proteasome
complex" evidence=IEA] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 MGI:MGI:1351511 GO:GO:0000502 eggNOG:COG1310
InterPro:IPR024969 Pfam:PF13012 GeneTree:ENSGT00530000063075
KO:K03038 HOGENOM:HOG000209236 OMA:RSIIALH MEROPS:M67.973 CTD:5713
HOVERGEN:HBG035951 OrthoDB:EOG441QC3 EMBL:M64641 EMBL:M64640
EMBL:M64634 EMBL:M64635 EMBL:M64636 EMBL:M64637 EMBL:M64639
EMBL:AK031013 EMBL:AK159825 IPI:IPI00114667 PIR:A40556
RefSeq:NP_034947.1 UniGene:Mm.18347 ProteinModelPortal:P26516
SMR:P26516 IntAct:P26516 STRING:P26516 PhosphoSite:P26516
PaxDb:P26516 PRIDE:P26516 Ensembl:ENSMUST00000044106 GeneID:17463
KEGG:mmu:17463 InParanoid:P26516 NextBio:292104 Bgee:P26516
Genevestigator:P26516 GermOnline:ENSMUSG00000039067 Uniprot:P26516
Length = 321
Score = 194 (73.4 bits), Expect = 3.6e-15, P = 3.6e-15
Identities = 65/208 (31%), Positives = 104/208 (50%)
Query: 64 VHPLVIFNICDCYVR--RPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFS--DQV-A 118
VHPLV+ ++ D + R + +RV+G LLGS +D+ NS+ VP +E D V
Sbjct: 11 VHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGS-WQKKVLDVSNSFAVPFDEDDKDDSVWF 69
Query: 119 LDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFR 178
LD +Y M KVN +E IVGW+ TG + I+E R PN V + +D +
Sbjct: 70 LDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPK 129
Query: 179 NGEGTVKAYVSVNLSLGDRQLAAQ-FQEIPLDLRMIEAERVGFDIL----KSTSV----D 229
+ +AY+SV D ++ F+ + ++ EAE VG + L K T+V
Sbjct: 130 DLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQ 189
Query: 230 KLPSDLEGMEVLMERLLTLINDIYKYVD 257
++ + + G++ L +LL DI Y++
Sbjct: 190 RITNQVHGLKGLNSKLL----DIRSYLE 213
>UNIPROTKB|P51665 [details] [associations]
symbol:PSMD7 "26S proteasome non-ATPase regulatory subunit
7" species:9606 "Homo sapiens" [GO:0005515 "protein binding"
evidence=IPI] [GO:0000502 "proteasome complex" evidence=TAS]
[GO:0005838 "proteasome regulatory particle" evidence=TAS]
[GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000082 "G1/S
transition of mitotic cell cycle" evidence=TAS] [GO:0000084 "S
phase of mitotic cell cycle" evidence=TAS] [GO:0000209 "protein
polyubiquitination" evidence=TAS] [GO:0000216 "M/G1 transition of
mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
evidence=TAS] [GO:0002474 "antigen processing and presentation of
peptide antigen via MHC class I" evidence=TAS] [GO:0002479 "antigen
processing and presentation of exogenous peptide antigen via MHC
class I, TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
"regulation of cellular amino acid metabolic process" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
"anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] Reactome:REACT_13505 Reactome:REACT_578
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_6850
Reactome:REACT_111217 InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
GO:GO:0005829 Reactome:REACT_111102 Reactome:REACT_116125
Reactome:REACT_6900 GO:GO:0006915 GO:GO:0010467 GO:GO:0016071
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0002479 GO:GO:0016032
Reactome:REACT_21300 GO:GO:0006977 GO:GO:0042981 GO:GO:0044281
GO:GO:0000082 GO:GO:0051436 GO:GO:0000216 GO:GO:0000209
eggNOG:COG1310 GO:GO:0000084 GO:GO:0031145 GO:GO:0051437
EMBL:CH471166 GO:GO:0006521 Reactome:REACT_383 InterPro:IPR024969
Pfam:PF13012 KO:K03038 GO:GO:0005838 HOGENOM:HOG000209236
OMA:RSIIALH MEROPS:M67.973 CTD:5713 HOVERGEN:HBG035951
OrthoDB:EOG441QC3 EMBL:D50063 EMBL:BC000338 EMBL:BC012606
IPI:IPI00019927 PIR:JC4154 PIR:S65491 RefSeq:NP_002802.2
UniGene:Hs.440604 PDB:2O95 PDB:2O96 PDBsum:2O95 PDBsum:2O96
ProteinModelPortal:P51665 SMR:P51665 DIP:DIP-27572N IntAct:P51665
MINT:MINT-5002613 STRING:P51665 PhosphoSite:P51665 DMDM:20532412
PaxDb:P51665 PeptideAtlas:P51665 PRIDE:P51665 DNASU:5713
Ensembl:ENST00000219313 GeneID:5713 KEGG:hsa:5713 UCSC:uc002fcq.3
GeneCards:GC16P074330 HGNC:HGNC:9565 HPA:CAB019379 MIM:157970
neXtProt:NX_P51665 PharmGKB:PA33911 InParanoid:P51665
PhylomeDB:P51665 ChiTaRS:PSMD7 EvolutionaryTrace:P51665
GenomeRNAi:5713 NextBio:22194 ArrayExpress:P51665 Bgee:P51665
CleanEx:HS_PSMD7 Genevestigator:P51665 GermOnline:ENSG00000103035
Uniprot:P51665
Length = 324
Score = 194 (73.4 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 65/208 (31%), Positives = 104/208 (50%)
Query: 64 VHPLVIFNICDCYVR--RPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFS--DQV-A 118
VHPLV+ ++ D + R + +RV+G LLGS +D+ NS+ VP +E D V
Sbjct: 11 VHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGS-WQKKVLDVSNSFAVPFDEDDKDDSVWF 69
Query: 119 LDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFR 178
LD +Y M KVN +E IVGW+ TG + I+E R PN V + +D +
Sbjct: 70 LDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPK 129
Query: 179 NGEGTVKAYVSVNLSLGDRQLAAQ-FQEIPLDLRMIEAERVGFDIL----KSTSV----D 229
+ +AY+SV D ++ F+ + ++ EAE VG + L K T+V
Sbjct: 130 DLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQ 189
Query: 230 KLPSDLEGMEVLMERLLTLINDIYKYVD 257
++ + + G++ L +LL DI Y++
Sbjct: 190 RITNQVHGLKGLNSKLL----DIRSYLE 213
>RGD|1306902 [details] [associations]
symbol:Psmd7 "proteasome (prosome, macropain) 26S subunit,
non-ATPase, 7" species:10116 "Rattus norvegicus" [GO:0000502
"proteasome complex" evidence=IEA] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 RGD:1306902 GO:GO:0000502 EMBL:CH473972
InterPro:IPR024969 Pfam:PF13012 GeneTree:ENSGT00530000063075
KO:K03038 OMA:RSIIALH CTD:5713 OrthoDB:EOG441QC3 IPI:IPI00359611
RefSeq:NP_001100896.1 UniGene:Rn.20659 IntAct:D4AEH3
Ensembl:ENSRNOT00000019104 GeneID:307821 KEGG:rno:307821
UCSC:RGD:1306902 NextBio:657930 Uniprot:D4AEH3
Length = 320
Score = 193 (73.0 bits), Expect = 4.5e-15, P = 4.5e-15
Identities = 65/208 (31%), Positives = 104/208 (50%)
Query: 64 VHPLVIFNICDCYVR--RPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFS--DQV-A 118
VHPLV+ ++ D + R + +RV+G LLGS +D+ NS+ VP +E D V
Sbjct: 11 VHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGS-WQKKVLDVSNSFAVPFDEDDKDDSVWF 69
Query: 119 LDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFR 178
LD +Y M KVN +E IVGW+ TG + I+E R PN V + +D +
Sbjct: 70 LDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPK 129
Query: 179 NGEGTVKAYVSVNLSLGDRQLAAQ-FQEIPLDLRMIEAERVGFDIL----KSTSV----D 229
+ +AY+SV D ++ F+ + ++ EAE VG + L K T+V
Sbjct: 130 DLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQ 189
Query: 230 KLPSDLEGMEVLMERLLTLINDIYKYVD 257
++ + + G++ L +LL DI Y++
Sbjct: 190 RITNQVHGLKGLNSKLL----DIRTYLE 213
>DICTYBASE|DDB_G0293180 [details] [associations]
symbol:csn6 "Mov34/MPN/PAD-1 family protein"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IEA;IDA] [GO:0008180 "signalosome"
evidence=IEA;ISS;IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0031410 "cytoplasmic vesicle" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000555
Pfam:PF01398 SMART:SM00232 dictyBase:DDB_G0293180 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0008180 eggNOG:COG1310
EMBL:AAFI02000199 KO:K12179 OMA:IGKQKGR InterPro:IPR024969
Pfam:PF13012 EMBL:DQ309434 RefSeq:XP_629327.1
ProteinModelPortal:Q54C92 STRING:Q54C92 PRIDE:Q54C92
EnsemblProtists:DDB0233105 GeneID:8629051 KEGG:ddi:DDB_G0293180
ProtClustDB:CLSZ2429325 Uniprot:Q54C92
Length = 309
Score = 192 (72.6 bits), Expect = 4.8e-15, P = 4.8e-15
Identities = 63/212 (29%), Positives = 105/212 (49%)
Query: 54 SAATSNVTAKVHPLVIFNICDCYVRRPDQAE-----RVIGTLLGSVLPDGTVDIRNSYVV 108
SA +S + +HPLV+ NI D + R Q+ RVIG +LG V V+I NS+ +
Sbjct: 20 SANSSGLEVDLHPLVLINISDHFTRTKVQSNYQDNCRVIGVILG-VQNGRNVEICNSFEM 78
Query: 109 PHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNP 168
+ Q+ LDIEY + K + ++ P ++GW+STG V+ L+H+ +P
Sbjct: 79 VYATVDKQLVLDIEY---LRKKYEQLFPLYDLLGWYSTGSQVSKDDILLHKQISEHNESP 135
Query: 169 VHLTVDTGF-RNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFD-ILKST 226
++L +DT ++ + V Y S L + + + F + P ++ EAER+G + I K T
Sbjct: 136 LYLMLDTDSPKSKDLPVIIYES-ELHIVNDEPTTIFVKTPYKIQTGEAERIGVNHIAKVT 194
Query: 227 SVDKLPSDLEGMEVLMERLLTLINDIYKYVDD 258
S L M ++++N K + D
Sbjct: 195 PSGSEGSGLTSHLFTMHNAISMLNIRVKALSD 226
>UNIPROTKB|Q3ZBD0 [details] [associations]
symbol:PSMD7 "26S proteasome non-ATPase regulatory subunit
7" species:9913 "Bos taurus" [GO:0000502 "proteasome complex"
evidence=IEA] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
GO:GO:0000502 eggNOG:COG1310 InterPro:IPR024969 Pfam:PF13012
GeneTree:ENSGT00530000063075 KO:K03038 HOGENOM:HOG000209236
OMA:RSIIALH EMBL:BC103437 IPI:IPI00685826 RefSeq:NP_001029595.1
UniGene:Bt.49378 ProteinModelPortal:Q3ZBD0 SMR:Q3ZBD0 STRING:Q3ZBD0
MEROPS:M67.973 PRIDE:Q3ZBD0 Ensembl:ENSBTAT00000024515
GeneID:512456 KEGG:bta:512456 CTD:5713 HOVERGEN:HBG035951
InParanoid:Q3ZBD0 OrthoDB:EOG441QC3 NextBio:20870397 Uniprot:Q3ZBD0
Length = 322
Score = 192 (72.6 bits), Expect = 6.1e-15, P = 6.1e-15
Identities = 62/199 (31%), Positives = 100/199 (50%)
Query: 64 VHPLVIFNICDCYVR--RPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFS--DQV-A 118
VHPLV+ ++ D + R + +RV+G LLGS +D+ NS+ VP +E D V
Sbjct: 11 VHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGS-WQKKVLDVSNSFAVPFDEDDKDDSVWF 69
Query: 119 LDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFR 178
LD +Y M KVN +E IVGW+ TG + I+E R PN V + +D +
Sbjct: 70 LDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPK 129
Query: 179 NGEGTVKAYVSVNLSLGDRQLAAQ-FQEIPLDLRMIEAERVGFDIL----KSTSV----D 229
+ +AY+SV D ++ F+ + ++ EAE VG + L K T+V
Sbjct: 130 DLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQ 189
Query: 230 KLPSDLEGMEVLMERLLTL 248
++ + + G++ L +LL +
Sbjct: 190 RITNQVHGLKGLNSKLLDI 208
>UNIPROTKB|A7TX81 [details] [associations]
symbol:COPS6 "COP9 signalosome complex subunit 6"
species:9823 "Sus scrofa" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008180 "signalosome" evidence=IEA] InterPro:IPR000555
Pfam:PF01398 SMART:SM00232 GO:GO:0005737 GO:GO:0008180 KO:K12179
InterPro:IPR024969 Pfam:PF13012 CTD:10980 HOVERGEN:HBG107770
EMBL:EF468513 RefSeq:NP_001098769.1 UniGene:Ssc.8359
ProteinModelPortal:A7TX81 GeneID:100125954 KEGG:ssc:100125954
Uniprot:A7TX81
Length = 323
Score = 190 (71.9 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 51/183 (27%), Positives = 96/183 (52%)
Query: 44 DRTVLQFGPSSAATSNVTAKVHPLVIFNICDCYVRRPDQAER---VIGTLLGSVLPDG-T 99
D V+ +S T +V+ +HPLVI NI D ++R Q R VIG L+G +G
Sbjct: 19 DAAVVPSVMASGVTGSVSVALHPLVILNISDHWIRMRSQEGRPMQVIGALIGK--QEGRN 76
Query: 100 VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSAL-IH 158
+++ NS+ + + +++ +D EY++T + +V + +GW++TG G S + +H
Sbjct: 77 IEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTG-GPPDPSDIHVH 135
Query: 159 EFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERV 218
+ C + +P+ L ++ ++ + V + SV + + + + F E+ L EAER+
Sbjct: 136 KQVCEIIESPLFLKLNPMTKHTDLPVSVFESV-IDIINGEATMLFAELTYTLATEEAERI 194
Query: 219 GFD 221
G D
Sbjct: 195 GVD 197
>UNIPROTKB|F1MG10 [details] [associations]
symbol:COPS6 "COP9 signalosome complex subunit 6"
species:9913 "Bos taurus" [GO:0010388 "cullin deneddylation"
evidence=IEA] [GO:0008180 "signalosome" evidence=IEA]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 GO:GO:0008180
GO:GO:0010388 OMA:IGKQKGR InterPro:IPR024969 Pfam:PF13012
IPI:IPI00867272 UniGene:Bt.52796 GeneTree:ENSGT00530000063075
EMBL:DAAA02058286 PRIDE:F1MG10 Ensembl:ENSBTAT00000003725
Uniprot:F1MG10
Length = 324
Score = 190 (71.9 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 51/183 (27%), Positives = 96/183 (52%)
Query: 44 DRTVLQFGPSSAATSNVTAKVHPLVIFNICDCYVRRPDQAER---VIGTLLGSVLPDG-T 99
D V+ +S T +V+ +HPLVI NI D ++R Q R VIG L+G +G
Sbjct: 20 DAAVVPSVMASGVTGSVSVALHPLVILNISDHWIRMRSQEGRPMQVIGALIGK--QEGRN 77
Query: 100 VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSAL-IH 158
+++ NS+ + + +++ +D EY++T + +V + +GW++TG G S + +H
Sbjct: 78 IEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTG-GPPDPSDIHVH 136
Query: 159 EFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERV 218
+ C + +P+ L ++ ++ + V + SV + + + + F E+ L EAER+
Sbjct: 137 KQVCEIIESPLFLKLNPMTKHTDLPVSVFESV-IDIINGEATMLFAELTYTLATEEAERI 195
Query: 219 GFD 221
G D
Sbjct: 196 GVD 198
>POMBASE|SPCC1682.10 [details] [associations]
symbol:rpn8 "19S proteasome regulatory subunit Rpn8
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004843
"ubiquitin-specific protease activity" evidence=ISM] [GO:0005634
"nucleus" evidence=IDA] [GO:0005635 "nuclear envelope"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IC]
[GO:0008541 "proteasome regulatory particle, lid subcomplex"
evidence=ISO] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=NAS] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 PomBase:SPCC1682.10 GO:GO:0005829 GO:GO:0007346
GO:GO:0005635 GO:GO:0043161 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0008541 eggNOG:COG1310 GO:GO:0004843 InterPro:IPR024969
Pfam:PF13012 KO:K03038 HOGENOM:HOG000209236 MEROPS:M67.973
PIR:T41067 RefSeq:NP_587803.1 ProteinModelPortal:O74440 SMR:O74440
IntAct:O74440 STRING:O74440 PRIDE:O74440 EnsemblFungi:SPCC1682.10.1
GeneID:2538912 KEGG:spo:SPCC1682.10 OMA:KKINANE OrthoDB:EOG4QC4FM
NextBio:20800090 Uniprot:O74440
Length = 324
Score = 190 (71.9 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 61/220 (27%), Positives = 107/220 (48%)
Query: 54 SAATSNVTAK---VHPLVIFNICDCYVRRPDQAER-VIGTLLGSVLPDGTVDIRNSYVVP 109
S+ TS + + VHPLV+ + D Y R +R V+G LLG D V++ NSY +P
Sbjct: 6 SSETSTIVPQQVIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGD-VVNVANSYAIP 64
Query: 110 HNEFSDQVA---LDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVP 166
E + LD + +M + K+N E +VGW+ TG + I+ + +P
Sbjct: 65 FEEDEKNASVWFLDHNFMESMNEMFKKINANEKLVGWYHTGPQLRPSDLEINNLLKKYIP 124
Query: 167 NPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQ-FQEIPLDLRMIEAERVGFD-ILK 224
NPV + +D ++ AY +++ D +++ F +P + EAE +G + +L+
Sbjct: 125 NPVLVIIDVKPKSVGLPTNAYFAIDEIEDDGSKSSRTFVHLPSSIEAEEAEEIGVEHLLR 184
Query: 225 ST---SVDKLPSDL----EGMEVLMERLLTLINDIYKYVD 257
T SV L + + + ++ L +RL + + + K VD
Sbjct: 185 DTRDASVGTLATRVTQQAQSLQGLGQRLTEIADYLRKVVD 224
>UNIPROTKB|A6QQ21 [details] [associations]
symbol:COPS6 "COP9 signalosome complex subunit 6"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008180 "signalosome" evidence=IEA] InterPro:IPR000555
Pfam:PF01398 SMART:SM00232 GO:GO:0005737 GO:GO:0008180
eggNOG:COG1310 HOGENOM:HOG000253002 KO:K12179 InterPro:IPR024969
Pfam:PF13012 EMBL:BC149601 IPI:IPI00867272 RefSeq:NP_001095433.1
UniGene:Bt.52796 ProteinModelPortal:A6QQ21 STRING:A6QQ21
PRIDE:A6QQ21 GeneID:512756 KEGG:bta:512756 CTD:10980
HOVERGEN:HBG107770 InParanoid:A6QQ21 OrthoDB:EOG4JDH76
NextBio:20870547 Uniprot:A6QQ21
Length = 324
Score = 189 (71.6 bits), Expect = 4.2e-14, P = 4.2e-14
Identities = 51/183 (27%), Positives = 96/183 (52%)
Query: 44 DRTVLQFGPSSAATSNVTAKVHPLVIFNICDCYVRRPDQAER---VIGTLLGSVLPDG-T 99
D V+ +S T +V+ +HPLVI NI D ++R Q R VIG L+G +G
Sbjct: 20 DAAVVPSVMASGVTGSVSVALHPLVILNISDHWIRMRSQEGRPMQVIGALIGK--QEGRN 77
Query: 100 VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSAL-IH 158
+++ NS+ + + +++ +D EY++T + +V + +GW++TG G S + +H
Sbjct: 78 IEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELDFLGWYTTG-GPPDPSDIHVH 136
Query: 159 EFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERV 218
+ C + +P+ L ++ ++ + V + SV + + + + F E+ L EAER+
Sbjct: 137 KQVCEIIESPLFLKLNPMTKHTDLPVSVFESV-IDIINGEATMLFAELTYTLATEEAERI 195
Query: 219 GFD 221
G D
Sbjct: 196 GVD 198
>MGI|MGI:1349439 [details] [associations]
symbol:Cops6 "COP9 (constitutive photomorphogenic) homolog,
subunit 6 (Arabidopsis thaliana)" species:10090 "Mus musculus"
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008180
"signalosome" evidence=ISO;IDA] [GO:0010388 "cullin deneddylation"
evidence=ISO] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
MGI:MGI:1349439 GO:GO:0005737 GO:GO:0008180 eggNOG:COG1310
GO:GO:0010388 HOGENOM:HOG000253002 KO:K12179 OMA:IGKQKGR
InterPro:IPR024969 Pfam:PF13012 CTD:10980 HOVERGEN:HBG107770
OrthoDB:EOG4JDH76 MEROPS:M67.972 EMBL:AF071315 EMBL:BC004664
EMBL:BC014286 IPI:IPI00131873 RefSeq:NP_036132.1 UniGene:Mm.3981
ProteinModelPortal:O88545 SMR:O88545 STRING:O88545
PhosphoSite:O88545 PaxDb:O88545 PRIDE:O88545
Ensembl:ENSMUST00000019638 GeneID:26893 KEGG:mmu:26893
InParanoid:O88545 NextBio:304723 Bgee:O88545 Genevestigator:O88545
GermOnline:ENSMUSG00000019494 Uniprot:O88545
Length = 324
Score = 188 (71.2 bits), Expect = 9.1e-14, P = 9.1e-14
Identities = 49/174 (28%), Positives = 93/174 (53%)
Query: 53 SSAATSNVTAKVHPLVIFNICDCYVRRPDQAER---VIGTLLGSVLPDG-TVDIRNSYVV 108
+S T +V+ +HPLVI NI D ++R Q R VIG L+G +G +++ NS+ +
Sbjct: 29 ASGVTGSVSVALHPLVILNISDHWIRMRSQEGRPMQVIGALIGK--QEGRNIEVMNSFEL 86
Query: 109 PHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSAL-IHEFYCREVPN 167
+ +++ +D EY++T + +V + +GW++TG G S + +H+ C + +
Sbjct: 87 LSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTG-GPPDPSDIHVHKQVCEIIES 145
Query: 168 PVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFD 221
P+ L ++ ++ + V + SV + + + + F E+ L EAER+G D
Sbjct: 146 PLFLKLNPMTKHTDLPVSVFESV-IDIINGEATMLFAELTYTLATEEAERIGVD 198
>UNIPROTKB|Q7L5N1 [details] [associations]
symbol:COPS6 "COP9 signalosome complex subunit 6"
species:9606 "Homo sapiens" [GO:0019048 "virus-host interaction"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0008180 "signalosome"
evidence=IDA] [GO:0010388 "cullin deneddylation" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
GO:GO:0005737 GO:GO:0019048 EMBL:CH236956 EMBL:CH471091
GO:GO:0008180 eggNOG:COG1310 GO:GO:0010388 HOGENOM:HOG000253002
KO:K12179 OMA:IGKQKGR InterPro:IPR024969 Pfam:PF13012 CTD:10980
HOVERGEN:HBG107770 OrthoDB:EOG4JDH76 MEROPS:M67.972 EMBL:BC002520
EMBL:U70735 IPI:IPI00163230 RefSeq:NP_006824.2 UniGene:Hs.15591
ProteinModelPortal:Q7L5N1 SMR:Q7L5N1 DIP:DIP-32655N IntAct:Q7L5N1
MINT:MINT-5005311 STRING:Q7L5N1 PhosphoSite:Q7L5N1 DMDM:55976470
PaxDb:Q7L5N1 PeptideAtlas:Q7L5N1 PRIDE:Q7L5N1 DNASU:10980
Ensembl:ENST00000303904 GeneID:10980 KEGG:hsa:10980 UCSC:uc003usu.3
GeneCards:GC07P099686 HGNC:HGNC:21749 HPA:HPA044315 MIM:614729
neXtProt:NX_Q7L5N1 PharmGKB:PA134919933 InParanoid:Q7L5N1
PhylomeDB:Q7L5N1 ChiTaRS:COPS6 GenomeRNAi:10980 NextBio:41718
ArrayExpress:Q7L5N1 Bgee:Q7L5N1 CleanEx:HS_COPS6
Genevestigator:Q7L5N1 GermOnline:ENSG00000168090 Uniprot:Q7L5N1
Length = 327
Score = 185 (70.2 bits), Expect = 3.8e-13, P = 3.8e-13
Identities = 50/183 (27%), Positives = 95/183 (51%)
Query: 44 DRTVLQFGPSSAATSNVTAKVHPLVIFNICDCYVRRPDQAER---VIGTLLGSVLPDG-T 99
D V+ + T +V+ +HPLVI NI D ++R Q R VIG L+G +G
Sbjct: 23 DAAVVPSVMACGVTGSVSVALHPLVILNISDHWIRMRSQEGRPVQVIGALIGK--QEGRN 80
Query: 100 VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSAL-IH 158
+++ NS+ + + +++ +D EY++T + +V + +GW++TG G S + +H
Sbjct: 81 IEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTG-GPPDPSDIHVH 139
Query: 159 EFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERV 218
+ C + +P+ L ++ ++ + V + SV + + + + F E+ L EAER+
Sbjct: 140 KQVCEIIESPLFLKLNPMTKHTDLPVSVFESV-IDIINGEATMLFAELTYTLATEEAERI 198
Query: 219 GFD 221
G D
Sbjct: 199 GVD 201
>RGD|1309919 [details] [associations]
symbol:Cops6 "COP9 signalosome subunit 6" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0008180
"signalosome" evidence=IEA;ISO] [GO:0010388 "cullin deneddylation"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 RGD:1309919
GO:GO:0008180 GO:GO:0010388 KO:K12179 InterPro:IPR024969
Pfam:PF13012 CTD:10980 OrthoDB:EOG4JDH76
GeneTree:ENSGT00530000063075 EMBL:CH474107 IPI:IPI00870712
RefSeq:NP_001100599.1 UniGene:Rn.35643 Ensembl:ENSRNOT00000001820
GeneID:304343 KEGG:rno:304343 UCSC:RGD:1309919 NextBio:652918
Uniprot:D3ZI16
Length = 344
Score = 185 (70.2 bits), Expect = 4.6e-13, P = 4.6e-13
Identities = 49/174 (28%), Positives = 92/174 (52%)
Query: 53 SSAATSNVTAKVHPLVIFNICDCYVRRPDQAER---VIGTLLGSVLPDG-TVDIRNSYVV 108
+S T +V+ +HPLVI NI D ++R Q R VIG L+G +G +++ NS+ +
Sbjct: 49 ASGVTGSVSVALHPLVILNISDHWIRMRSQEGRPMQVIGALIGK--QEGRNIEVMNSFEL 106
Query: 109 PHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSAL-IHEFYCREVPN 167
+ ++ +D EY++T + +V + +GW++TG G S + +H+ C + +
Sbjct: 107 LSHTVEKKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTG-GPPDPSDIHVHKQVCEIIES 165
Query: 168 PVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFD 221
P+ L ++ ++ + V + SV + + + + F E+ L EAER+G D
Sbjct: 166 PLFLKLNPMTKHTDLPVSVFESV-IDIINGEATMLFAELTYTLATEEAERIGVD 218
>UNIPROTKB|E7EM64 [details] [associations]
symbol:COPS6 "COP9 signalosome complex subunit 6"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000555
Pfam:PF01398 SMART:SM00232 GO:GO:0005634 InterPro:IPR024969
Pfam:PF13012 HGNC:HGNC:21749 ChiTaRS:COPS6 EMBL:AC073842
IPI:IPI00924791 ProteinModelPortal:E7EM64 SMR:E7EM64
Ensembl:ENST00000418625 ArrayExpress:E7EM64 Bgee:E7EM64
Uniprot:E7EM64
Length = 326
Score = 183 (69.5 bits), Expect = 7.6e-13, P = 7.6e-13
Identities = 48/170 (28%), Positives = 91/170 (53%)
Query: 57 TSNVTAKVHPLVIFNICDCYVRRPDQAER---VIGTLLGSVLPDG-TVDIRNSYVVPHNE 112
T +V+ +HPLVI NI D ++R Q R VIG L+G +G +++ NS+ + +
Sbjct: 35 TGSVSVALHPLVILNISDHWIRMRSQEGRPVQVIGALIGK--QEGRNIEVMNSFELLSHT 92
Query: 113 FSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSAL-IHEFYCREVPNPVHL 171
+++ +D EY++T + +V + +GW++TG G S + +H+ C + +P+ L
Sbjct: 93 VEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTG-GPPDPSDIHVHKQVCEIIESPLFL 151
Query: 172 TVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFD 221
++ ++ + V + SV + + + + F E+ L EAER+G D
Sbjct: 152 KLNPMTKHTDLPVSVFESV-IDIINGEATMLFAELTYTLATEEAERIGVD 200
>ZFIN|ZDB-GENE-030131-5541 [details] [associations]
symbol:psmd7 "proteasome (prosome, macropain) 26S
subunit, non-ATPase, 7 (Mov34 homolog)" species:7955 "Danio rerio"
[GO:0021551 "central nervous system morphogenesis" evidence=IMP]
[GO:0000502 "proteasome complex" evidence=IEA] InterPro:IPR000555
Pfam:PF01398 SMART:SM00232 ZFIN:ZDB-GENE-030131-5541 GO:GO:0000502
eggNOG:COG1310 GO:GO:0021551 InterPro:IPR024969 Pfam:PF13012
GeneTree:ENSGT00530000063075 KO:K03038 HOGENOM:HOG000209236
OMA:RSIIALH MEROPS:M67.973 CTD:5713 HOVERGEN:HBG035951
OrthoDB:EOG441QC3 EMBL:BC044358 EMBL:BC066605 IPI:IPI00481317
RefSeq:NP_956083.1 UniGene:Dr.80368 SMR:Q7ZYX7 STRING:Q7ZYX7
Ensembl:ENSDART00000098229 GeneID:327330 KEGG:dre:327330
InParanoid:Q7ZYX7 NextBio:20809984 Uniprot:Q7ZYX7
Length = 327
Score = 182 (69.1 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 63/208 (30%), Positives = 103/208 (49%)
Query: 64 VHPLVIFNICDCYVR--RPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFS--DQV-A 118
VHPLV+ ++ D + R + +RV+G LLGS +D+ NS+ VP +E D V
Sbjct: 11 VHPLVLLSVVDHFNRIGKVGSQKRVVGVLLGS-WQKKVLDVSNSFAVPFDEDDKDDSVWF 69
Query: 119 LDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFR 178
LD +Y M KVN +E IVGW+ TG + I+E + N V + +D +
Sbjct: 70 LDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKQYCSNSVLVIIDVKPK 129
Query: 179 NGEGTVKAYVSVNLSLGDRQLAAQ-FQEIPLDLRMIEAERVGFDIL----KSTSV----D 229
+ +AY+SV D ++ F+ + ++ EAE VG + L K T+V
Sbjct: 130 DLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQ 189
Query: 230 KLPSDLEGMEVLMERLLTLINDIYKYVD 257
++ + + G++ L +LL DI Y++
Sbjct: 190 RITNQVHGLKGLNSKLL----DIKSYLE 213
>ASPGD|ASPL0000029143 [details] [associations]
symbol:AN5121 species:162425 "Emericella nidulans"
[GO:0005622 "intracellular" evidence=IDA] [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0008541 "proteasome regulatory particle, lid
subcomplex" evidence=IEA] [GO:0005635 "nuclear envelope"
evidence=IEA] [GO:0034515 "proteasome storage granule"
evidence=IEA] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
EMBL:BN001305 InterPro:IPR024969 Pfam:PF13012 HOGENOM:HOG000209236
OMA:RSIIALH EnsemblFungi:CADANIAT00003105 Uniprot:C8VEY3
Length = 349
Score = 179 (68.1 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 60/217 (27%), Positives = 98/217 (45%)
Query: 54 SAATSNVTAKVHPLVIFNICDCYVRRPDQA-ERVIGTLLGSVLPDGTVDIRNSYVVPHNE 112
S T VT V PLV+ ++ D Y R +RV+G LLG + G V + NS+ VP E
Sbjct: 10 SLVTRTVT--VAPLVLLSVADHYGRSAKGTRKRVVGVLLGEHI-GGNVRVSNSFAVPFEE 66
Query: 113 FSDQVA---LDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPV 169
+ LD + +M K+N +E ++GW+ +G + I+E + R PNP+
Sbjct: 67 DEKDPSVWFLDHNFVESMRDMFKKINAREKLIGWYHSGPKLRASDLEINELFKRYTPNPL 126
Query: 170 HLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQ-FQEIPLDLRMIEAERVGF-------- 220
+ VD + AY +V+ D ++ F P + EAE +G
Sbjct: 127 LVIVDVQPKEVGVPTDAYFAVDEIKDDGTTTSRTFVHTPSTIEAEEAEEIGVEHLLRDIR 186
Query: 221 DILKSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVD 257
D+ T ++ S L+ ++ L RL + + K +D
Sbjct: 187 DVAVGTLSTRITSQLQSLQGLHLRLRDIGQYLQKVLD 223
>CGD|CAL0002371 [details] [associations]
symbol:RPN8 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0035690 "cellular response to
drug" evidence=IMP] [GO:0008541 "proteasome regulatory particle,
lid subcomplex" evidence=IEA] [GO:0005635 "nuclear envelope"
evidence=IEA] [GO:0034515 "proteasome storage granule"
evidence=IEA] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
CGD:CAL0002371 GO:GO:0035690 EMBL:AACQ01000100 eggNOG:COG1310
InterPro:IPR024969 Pfam:PF13012 KO:K03038 HOGENOM:HOG000209236
MEROPS:M67.973 RefSeq:XP_714586.1 ProteinModelPortal:Q59YL2
SMR:Q59YL2 STRING:Q59YL2 GeneID:3643770 KEGG:cal:CaO19.3168
Uniprot:Q59YL2
Length = 330
Score = 178 (67.7 bits), Expect = 4.8e-12, P = 4.8e-12
Identities = 58/203 (28%), Positives = 94/203 (46%)
Query: 64 VHPLVIFNICDCYVR-RPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVA---L 119
V PLV+ ++ D Y R D +RV+G +LG D T+ + NSY +P E L
Sbjct: 20 VSPLVLLSVVDHYNRVAKDSKKRVVGVILGDNSTD-TIKVTNSYAIPFEEDEKNPGVWFL 78
Query: 120 DIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRN 179
D + +M + K+N +E ++GW+ +G + I+E + R NP+ L VD R
Sbjct: 79 DHNFIDSMGEMFKKINAKEKLIGWYHSGPKLKPSDLKINEVFRRYTDNPLLLIVDVQPRE 138
Query: 180 GEGTVKAYVSVNLSLGDRQLAAQ-FQEIPLDLRMIEAERVGFDILKSTSVDKLPSDLE-G 237
AY +V+ D A + F +P + EAE +G + L D+ +L
Sbjct: 139 VGIPTDAYFAVDDIKNDGSAAEKTFIHVPSLIEAEEAEEIGVEHLLRDIRDQAAGNLSLR 198
Query: 238 MEVLMERLLTL---INDIYKYVD 257
+ + LL L + +I Y+D
Sbjct: 199 VSETHQSLLGLHQKLGEIANYLD 221
>UNIPROTKB|Q59YL2 [details] [associations]
symbol:RPN8 "Likely 26S proteasome regulatory particle
subunit Rpn8p" species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] [GO:0035690 "cellular response to
drug" evidence=IMP] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
CGD:CAL0002371 GO:GO:0035690 EMBL:AACQ01000100 eggNOG:COG1310
InterPro:IPR024969 Pfam:PF13012 KO:K03038 HOGENOM:HOG000209236
MEROPS:M67.973 RefSeq:XP_714586.1 ProteinModelPortal:Q59YL2
SMR:Q59YL2 STRING:Q59YL2 GeneID:3643770 KEGG:cal:CaO19.3168
Uniprot:Q59YL2
Length = 330
Score = 178 (67.7 bits), Expect = 4.8e-12, P = 4.8e-12
Identities = 58/203 (28%), Positives = 94/203 (46%)
Query: 64 VHPLVIFNICDCYVR-RPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVA---L 119
V PLV+ ++ D Y R D +RV+G +LG D T+ + NSY +P E L
Sbjct: 20 VSPLVLLSVVDHYNRVAKDSKKRVVGVILGDNSTD-TIKVTNSYAIPFEEDEKNPGVWFL 78
Query: 120 DIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRN 179
D + +M + K+N +E ++GW+ +G + I+E + R NP+ L VD R
Sbjct: 79 DHNFIDSMGEMFKKINAKEKLIGWYHSGPKLKPSDLKINEVFRRYTDNPLLLIVDVQPRE 138
Query: 180 GEGTVKAYVSVNLSLGDRQLAAQ-FQEIPLDLRMIEAERVGFDILKSTSVDKLPSDLE-G 237
AY +V+ D A + F +P + EAE +G + L D+ +L
Sbjct: 139 VGIPTDAYFAVDDIKNDGSAAEKTFIHVPSLIEAEEAEEIGVEHLLRDIRDQAAGNLSLR 198
Query: 238 MEVLMERLLTL---INDIYKYVD 257
+ + LL L + +I Y+D
Sbjct: 199 VSETHQSLLGLHQKLGEIANYLD 221
>UNIPROTKB|G4NCJ9 [details] [associations]
symbol:MGG_01059 "26S proteasome regulatory subunit rpn-8"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
EMBL:CM001235 GO:GO:0000502 InterPro:IPR024969 Pfam:PF13012
KO:K03038 RefSeq:XP_003717880.1 ProteinModelPortal:G4NCJ9
SMR:G4NCJ9 EnsemblFungi:MGG_01059T0 GeneID:2674847
KEGG:mgr:MGG_01059 Uniprot:G4NCJ9
Length = 357
Score = 178 (67.7 bits), Expect = 6.3e-12, P = 6.3e-12
Identities = 62/215 (28%), Positives = 99/215 (46%)
Query: 54 SAATSNVTAKVHPLVIFNICDCYVRRP-DQAE--RVIGTLLGSVLPDG-TVDIRNSYVVP 109
S T NV+ V PLV+ ++ D Y R +Q + RV+G LLG DG V + NS+ VP
Sbjct: 10 SLVTRNVS--VAPLVLLSVVDHYNRESANQTKNKRVVGVLLGQ--NDGKNVRVSNSFAVP 65
Query: 110 HNEFSDQVA---LDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVP 166
E + LD Y +M KVN +E ++GW+ +G + I+E + R P
Sbjct: 66 FEEDEKNPSVWFLDHNYVESMNDMFKKVNAREKLIGWYHSGPKLRASDLEINELFKRYTP 125
Query: 167 NPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQ-FQEIPLDLRMIEAERVGFDIL-- 223
NP+ + +D + AY +V+ D ++ F P + EAE +G + L
Sbjct: 126 NPLLVIIDVQPKEAGVPTDAYFAVDEIKDDGTATSRTFVHTPSIIEAEEAEEIGVEHLLR 185
Query: 224 --KSTSVDKLPSDLEGMEVLMERLLTLINDIYKYV 256
+ +V L + L ++ L + DI Y+
Sbjct: 186 DIRDVAVGTLSTRLTNQLQSLQGLHLRLRDIQAYL 220
>CGD|CAL0000353 [details] [associations]
symbol:orf19.4283 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0016282 "eukaryotic 43S
preinitiation complex" evidence=IEA] [GO:0071541 "eukaryotic
translation initiation factor 3 complex, eIF3m" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0071540 "eukaryotic
translation initiation factor 3 complex, eIF3e" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 CGD:CAL0000353 eggNOG:COG1310 EMBL:AACQ01000021
EMBL:AACQ01000022 KO:K03249 RefSeq:XP_720591.1 RefSeq:XP_720719.1
ProteinModelPortal:Q5AG96 STRING:Q5AG96 GeneID:3637587
GeneID:3637771 KEGG:cal:CaO19.11759 KEGG:cal:CaO19.4283
Uniprot:Q5AG96
Length = 335
Score = 177 (67.4 bits), Expect = 7.4e-12, P = 7.4e-12
Identities = 41/138 (29%), Positives = 79/138 (57%)
Query: 53 SSAATSNVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHN 111
+ +A + K+H + I + + + +R+IGTLLGS DG ++I++ ++VP N
Sbjct: 20 AGSANGPASIKIHAPAMLTILEI-ISQQVLNKRIIGTLLGSRSDDGLEMEIKDGFMVPIN 78
Query: 112 EFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREV----PN 167
E D +A++ + H ++ + + K +P+E ++GWF + + ++LIH+FY + V P
Sbjct: 79 ETGDSIAIEDQVHKSLYQLYKKAHPKETVLGWFGSSNQIDDITSLIHDFYSKGVDRAFPF 138
Query: 168 P-VHLTVDTGFRNGEGTV 184
P ++L V+ F N + V
Sbjct: 139 PAIYLNVE--FLNEKNQV 154
>UNIPROTKB|Q5AG96 [details] [associations]
symbol:CaO19.11759 "Potential translation initiation factor
eIF3-epsilon-p47 subunit" species:237561 "Candida albicans SC5314"
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR000555
Pfam:PF01398 SMART:SM00232 CGD:CAL0000353 eggNOG:COG1310
EMBL:AACQ01000021 EMBL:AACQ01000022 KO:K03249 RefSeq:XP_720591.1
RefSeq:XP_720719.1 ProteinModelPortal:Q5AG96 STRING:Q5AG96
GeneID:3637587 GeneID:3637771 KEGG:cal:CaO19.11759
KEGG:cal:CaO19.4283 Uniprot:Q5AG96
Length = 335
Score = 177 (67.4 bits), Expect = 7.4e-12, P = 7.4e-12
Identities = 41/138 (29%), Positives = 79/138 (57%)
Query: 53 SSAATSNVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHN 111
+ +A + K+H + I + + + +R+IGTLLGS DG ++I++ ++VP N
Sbjct: 20 AGSANGPASIKIHAPAMLTILEI-ISQQVLNKRIIGTLLGSRSDDGLEMEIKDGFMVPIN 78
Query: 112 EFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREV----PN 167
E D +A++ + H ++ + + K +P+E ++GWF + + ++LIH+FY + V P
Sbjct: 79 ETGDSIAIEDQVHKSLYQLYKKAHPKETVLGWFGSSNQIDDITSLIHDFYSKGVDRAFPF 138
Query: 168 P-VHLTVDTGFRNGEGTV 184
P ++L V+ F N + V
Sbjct: 139 PAIYLNVE--FLNEKNQV 154
>SGD|S000005787 [details] [associations]
symbol:RPN8 "non-ATPase regulatory subunit of the 26S
proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0008541
"proteasome regulatory particle, lid subcomplex" evidence=IDA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034515 "proteasome storage granule" evidence=IDA] [GO:0000502
"proteasome complex" evidence=IEA] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 SGD:S000005787 EMBL:BK006948 GO:GO:0008541
GO:GO:0006511 eggNOG:COG1310 InterPro:IPR024969 Pfam:PF13012
GeneTree:ENSGT00530000063075 RefSeq:NP_014907.3 GeneID:854437
KEGG:sce:YOR264W GO:GO:0034515 RefSeq:NP_014904.3 PDB:4B4T
PDBsum:4B4T GeneID:854435 KEGG:sce:YOR261C KO:K03038
HOGENOM:HOG000209236 OMA:RSIIALH MEROPS:M67.973 OrthoDB:EOG4QC4FM
EMBL:Z75169 EMBL:AY558039 PIR:S67158 ProteinModelPortal:Q08723
SMR:Q08723 DIP:DIP-1574N IntAct:Q08723 MINT:MINT-405204
STRING:Q08723 PaxDb:Q08723 PeptideAtlas:Q08723 EnsemblFungi:YOR261C
NextBio:976670 Genevestigator:Q08723 GermOnline:YOR261C
Uniprot:Q08723
Length = 338
Score = 162 (62.1 bits), Expect = 7.1e-10, P = 7.1e-10
Identities = 53/208 (25%), Positives = 95/208 (45%)
Query: 64 VHPLVIFNICDCYVR-RPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEF---SDQVAL 119
+ PLV+ + D Y R + + +R +G +LG T+ + NS+ +P E SD L
Sbjct: 10 IAPLVLLSALDHYERTQTKENKRCVGVILGDA-NSSTIRVTNSFALPFEEDEKNSDVWFL 68
Query: 120 DIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPN-PVHLTVDTGFR 178
D Y M + K+N +E ++GW+ +G + I+E + + N P+ L VD +
Sbjct: 69 DHNYIENMNEMCKKINAKEKLIGWYHSGPKLRASDLKINELFKKYTQNNPLLLIVDVK-Q 127
Query: 179 NGEGT-VKAYVSVNLSLGDRQLAAQ-FQEIPLDLRMIEAERVGFDIL----KSTSVDKLP 232
G G AYV++ D + F +P + EAE +G + L + + L
Sbjct: 128 QGVGLPTDAYVAIEQVKDDGTSTEKTFLHLPCTIEAEEAEEIGVEHLLRDVRDQAAGGLS 187
Query: 233 SDLEGMEVLMERLLTLINDIYKYVDDTV 260
L ++ L + + D+ +Y+D +
Sbjct: 188 IRLTNQLKSLKGLQSKLKDVVEYLDKVI 215
>FB|FBgn0028837 [details] [associations]
symbol:CSN6 "COP9 complex homolog subunit 6" species:7227
"Drosophila melanogaster" [GO:0008180 "signalosome" evidence=ISS]
[GO:0050821 "protein stabilization" evidence=IMP] [GO:0007095
"mitotic G2 DNA damage checkpoint" evidence=IGI] [GO:0046331
"lateral inhibition" evidence=IMP] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 EMBL:AE014297 GO:GO:0007275 GO:GO:0005737
GO:GO:0007095 GO:GO:0050821 GO:GO:0048477 GO:GO:0046331
GO:GO:0008180 eggNOG:COG1310 GO:GO:0000338 GO:GO:0019781 KO:K12179
OMA:IGKQKGR InterPro:IPR024969 Pfam:PF13012
GeneTree:ENSGT00530000063075 EMBL:AY070607 RefSeq:NP_524451.1
UniGene:Dm.2377 PDB:4E0Q PDBsum:4E0Q ProteinModelPortal:Q9VCY3
SMR:Q9VCY3 IntAct:Q9VCY3 MINT:MINT-991251 STRING:Q9VCY3
MEROPS:M67.972 PaxDb:Q9VCY3 PRIDE:Q9VCY3 EnsemblMetazoa:FBtr0084265
GeneID:42661 KEGG:dme:Dmel_CG6932 CTD:42661 FlyBase:FBgn0028837
InParanoid:Q9VCY3 OrthoDB:EOG4KSN1G PhylomeDB:Q9VCY3
GenomeRNAi:42661 NextBio:829940 Bgee:Q9VCY3 GermOnline:CG6932
Uniprot:Q9VCY3
Length = 341
Score = 148 (57.2 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 54/217 (24%), Positives = 101/217 (46%)
Query: 53 SSAATS-NVTAKVHPLVIFNICDCYVR-RPDQAE--RVIGTLLGSVLPDGTVDIRNSYVV 108
++A TS +VT +HPLVI NI + + R R E +V G L+G ++I NS+ +
Sbjct: 44 AAAGTSGSVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQ-KGRNIEIMNSFEL 102
Query: 109 PHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNP 168
+ D+ ++ +Y++ + + +V +GW++TG T I P
Sbjct: 103 KTDVIGDETVINKDYYNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIKIQRQIAAINECP 162
Query: 169 VHLTVDTGFRNGEGT-VKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFD-ILKST 226
+ L ++ R+ + +K + S+ + L D + F + L EAER+G D + + T
Sbjct: 163 IMLQLNPLSRSVDHLPLKLFESL-IDLVDGEATMLFVPLTYTLATEEAERIGVDHVARMT 221
Query: 227 SVDK-----LPSDLEGMEVLMERLLTLINDIYKYVDD 258
S + + L + ++ L T I + +Y+ D
Sbjct: 222 SNESGEKSVVAEHLVAQDSAIKMLNTRIKIVLQYIRD 258
>TAIR|locus:2177601 [details] [associations]
symbol:CSN6A "AT5G56280" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=TAS] [GO:0030163 "protein
catabolic process" evidence=TAS] [GO:0008180 "signalosome"
evidence=TAS;IPI] [GO:0009640 "photomorphogenesis"
evidence=RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IMP] [GO:0007275 "multicellular organismal development"
evidence=IMP] [GO:0010387 "signalosome assembly" evidence=IMP]
[GO:0009165 "nucleotide biosynthetic process" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0043161
"proteasomal ubiquitin-dependent protein catabolic process"
evidence=RCA] [GO:0043248 "proteasome assembly" evidence=RCA]
[GO:0051788 "response to misfolded protein" evidence=RCA]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 GO:GO:0007275
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006511
GO:GO:0009585 GO:GO:0008180 eggNOG:COG1310 GO:GO:0010387
EMBL:AY048692 EMBL:AF395063 EMBL:AB026656 EMBL:BT004034
IPI:IPI00519357 RefSeq:NP_568839.1 UniGene:At.20191
ProteinModelPortal:Q8W206 SMR:Q8W206 IntAct:Q8W206 STRING:Q8W206
PaxDb:Q8W206 PRIDE:Q8W206 EnsemblPlants:AT5G56280.1 GeneID:835727
KEGG:ath:AT5G56280 TAIR:At5g56280 HOGENOM:HOG000253002
InParanoid:Q8W206 KO:K12179 OMA:IGKQKGR PhylomeDB:Q8W206
ProtClustDB:CLSN2689622 Genevestigator:Q8W206 GermOnline:AT5G56280
InterPro:IPR024969 Pfam:PF13012 Uniprot:Q8W206
Length = 317
Score = 99 (39.9 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 48/183 (26%), Positives = 84/183 (45%)
Query: 82 QAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIV 141
Q RV G ++G V TV+I NS+ + ++ S Q LD + + + KV P I+
Sbjct: 54 QNPRVYGCVIG-VQRGRTVEIFNSFELLYDP-STQT-LDRSFLEKKQELYKKVFPDFYIL 110
Query: 142 GWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGT--VKAYVS-VNLSLGDRQ 198
GW+STG IH+ +PV++ ++ + + V Y S +++ G Q
Sbjct: 111 GWYSTGSDAEESDMHIHKALMDINESPVYVLLNPAINHTQKDLPVTIYESELHVIDGIPQ 170
Query: 199 LAAQFQEIPLDLRMIEAERVGFDI---LK----STSVDKLPSDLEGMEVLMERLLTLIND 251
L F + +EAER+ D LK ++ +L + L G+ ++ L + I
Sbjct: 171 LI--FAHTSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRV 228
Query: 252 IYK 254
+Y+
Sbjct: 229 LYQ 231
Score = 69 (29.3 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 52 PSSAATSNVTAKVHPLVIFNICDCYVR 78
PSS+ S +T K+HPLVI NI D Y R
Sbjct: 3 PSSS--SGLTFKLHPLVIVNISDHYTR 27
>TAIR|locus:2131493 [details] [associations]
symbol:CSN6B "AT4G26430" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
"extracellular region" evidence=ISM] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=ISS]
[GO:0010387 "signalosome assembly" evidence=IMP] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0000338 "protein deneddylation"
evidence=TAS] [GO:0008180 "signalosome" evidence=IPI]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 GO:GO:0007275
GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009585
EMBL:AL161565 EMBL:AL022223 GO:GO:0008180 eggNOG:COG1310
GO:GO:0000338 GO:GO:0010387 HOGENOM:HOG000253002 KO:K12179
ProtClustDB:CLSN2689622 InterPro:IPR024969 Pfam:PF13012
EMBL:AF434762 EMBL:AF395064 EMBL:AY080638 EMBL:BT002345
EMBL:AY087556 IPI:IPI00531332 PIR:T05061 RefSeq:NP_567746.1
UniGene:At.26288 UniGene:At.28451 UniGene:At.75239
ProteinModelPortal:Q8W1P0 SMR:Q8W1P0 IntAct:Q8W1P0 STRING:Q8W1P0
PaxDb:Q8W1P0 PRIDE:Q8W1P0 EnsemblPlants:AT4G26430.1 GeneID:828749
KEGG:ath:AT4G26430 TAIR:At4g26430 InParanoid:Q8W1P0 OMA:AMITNCT
PhylomeDB:Q8W1P0 Genevestigator:Q8W1P0 GermOnline:AT4G26430
Uniprot:Q8W1P0
Length = 317
Score = 103 (41.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 46/185 (24%), Positives = 83/185 (44%)
Query: 82 QAERVIGTLLGSVLPDG-TVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVI 140
Q RV G ++G L G TV+I NS+ + + D LD + + + KV P +
Sbjct: 54 QNPRVYGCVIG--LQRGRTVEIFNSFELIFDPALD--TLDRSFLEKKQELYKKVFPDFYV 109
Query: 141 VGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGT--VKAYVSVNLSLGDRQ 198
+GW+STG T IH+ +PV++ ++ + + V Y S + D
Sbjct: 110 LGWYSTGSDATESDMHIHKALMDINESPVYVLLNPAINHAQKDLPVTIYES-EFHVIDGI 168
Query: 199 LAAQFQEIPLDLRMIEAERVGFDI---LK----STSVDKLPSDLEGMEVLMERLLTLIND 251
+ F + +EAER+ D LK ++ +L + L G+ ++ L + I
Sbjct: 169 PQSIFVHTSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRV 228
Query: 252 IYKYV 256
+Y+++
Sbjct: 229 LYQHI 233
Score = 63 (27.2 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 52 PSSAATSNVTAKVHPLVIFNICDCYVR 78
PSS+ S +T K+HPLV+ NI D + R
Sbjct: 3 PSSS--SGLTFKLHPLVMLNISDHFTR 27
>ZFIN|ZDB-GENE-040808-19 [details] [associations]
symbol:eif3ha "eukaryotic translation initiation
factor 3, subunit H, a" species:7955 "Danio rerio" [GO:0005852
"eukaryotic translation initiation factor 3 complex" evidence=ISS]
[GO:0006413 "translational initiation" evidence=IEA;ISS]
[GO:0003743 "translation initiation factor activity"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0007420 "brain
development" evidence=IMP] [GO:0048882 "lateral line development"
evidence=IMP] [GO:0001944 "vasculature development" evidence=IMP]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
ZFIN:ZDB-GENE-040808-19 GO:GO:0007420 GO:GO:0006413 GO:GO:0003743
GO:GO:0001944 GO:GO:0005852 EMBL:BC079514 IPI:IPI00496845
RefSeq:NP_001003763.1 UniGene:Dr.150579 STRING:Q6AXJ2
MEROPS:M67.971 PRIDE:Q6AXJ2 Ensembl:ENSDART00000044634
Ensembl:ENSDART00000110583 GeneID:445306 KEGG:dre:445306 CTD:445306
eggNOG:NOG314046 GeneTree:ENSGT00550000074674 HOGENOM:HOG000248787
HOVERGEN:HBG000883 KO:K03247 OMA:NCFPFPK OrthoDB:EOG4SJ5FF
NextBio:20832051 ArrayExpress:Q6AXJ2 Bgee:Q6AXJ2 GO:GO:0048882
HAMAP:MF_03007 Uniprot:Q6AXJ2
Length = 335
Score = 110 (43.8 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 43/132 (32%), Positives = 63/132 (47%)
Query: 63 KVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVP-HNEFSDQVALD- 120
+V LV+ I Y +E V G LLG V+ D ++I N + P H E D V D
Sbjct: 23 QVDGLVVLKIIKHYQEEGQGSEVVQGVLLGLVVED-RLEITNCFPFPQHTE--DDVEFDE 79
Query: 121 IEYHHTMLKSHLKVNPQEVIVGWF-STGLGVTGGSALIH-EF-YCREVPNPVHLTVDTGF 177
++Y M++S VN + VGW+ ST G AL+ +F Y + V L D
Sbjct: 80 VQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVSRALLDSQFSYQHAIEESVVLIYDP-L 138
Query: 178 RNGEGTV--KAY 187
+ +G++ KAY
Sbjct: 139 KTAQGSLCLKAY 150
Score = 48 (22.0 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 203 FQEIPLDLRMIEAERV-GFDIL-KSTSVDK-----LPSD--LE-GMEVLMERLLTLINDI 252
F+E+P+ ++ V +D+ KST DK L S LE +++LM+R+ + DI
Sbjct: 181 FEEVPIFIKNSHLINVLMWDLQEKSTLADKHELLNLSSSNHLEKSLQLLMDRVDDMSQDI 240
Query: 253 YKY 255
KY
Sbjct: 241 VKY 243
>UNIPROTKB|Q6P381 [details] [associations]
symbol:eif3h "Eukaryotic translation initiation factor 3
subunit H" species:8364 "Xenopus (Silurana) tropicalis" [GO:0005852
"eukaryotic translation initiation factor 3 complex" evidence=ISS]
[GO:0006413 "translational initiation" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 GO:GO:0006413
GO:GO:0003743 GO:GO:0005852 MEROPS:M67.971 eggNOG:NOG314046
HOGENOM:HOG000248787 HOVERGEN:HBG000883 KO:K03247 HAMAP:MF_03007
CTD:8667 EMBL:BC064151 RefSeq:NP_989359.1 UniGene:Str.1956
ProteinModelPortal:Q6P381 STRING:Q6P381 GeneID:394989
KEGG:xtr:394989 Xenbase:XB-GENE-958115 InParanoid:Q6P381
OrthoDB:EOG4VQ9PV Uniprot:Q6P381
Length = 335
Score = 116 (45.9 bits), Expect = 0.00020, P = 0.00020
Identities = 44/140 (31%), Positives = 67/140 (47%)
Query: 55 AATSNVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVP-HNEF 113
A T+ ++ +V+ I Y +E V G LLG V+ D ++I N + P H E
Sbjct: 15 AETAVKQVQIDGMVVLKIIKHYQEEGHGSEVVQGVLLGLVVDD-RLEITNCFPFPQHTE- 72
Query: 114 SDQVALD-IEYHHTMLKSHLKVNPQEVIVGWF-STGLGVTGGSALIH-EF-YCREVPNPV 169
D V D ++Y M++S VN + VGW+ ST G AL+ +F Y + V
Sbjct: 73 -DDVDFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTFYGTFVSRALLDSQFSYQHAIEESV 131
Query: 170 HLTVDTGFRNGEGTV--KAY 187
L D + G+G++ KAY
Sbjct: 132 VLIYDP-IKTGQGSLSLKAY 150
>UNIPROTKB|Q5PPY6 [details] [associations]
symbol:eif3h "Eukaryotic translation initiation factor 3
subunit H" species:8355 "Xenopus laevis" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000555
Pfam:PF01398 SMART:SM00232 GO:GO:0006413 GO:GO:0003743
GO:GO:0005852 MEROPS:M67.971 HOVERGEN:HBG000883 KO:K03247
HAMAP:MF_03007 CTD:8667 EMBL:BC087438 RefSeq:NP_001088779.1
UniGene:Xl.7704 GeneID:496043 KEGG:xla:496043
Xenbase:XB-GENE-958120 Uniprot:Q5PPY6
Length = 334
Score = 112 (44.5 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 44/140 (31%), Positives = 66/140 (47%)
Query: 55 AATSNVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVP-HNEF 113
A T+ ++ LV+ I Y +E V G LLG V+ D ++I N + P H E
Sbjct: 14 AETAVKQVQIDGLVVLKIIKHYQEEGHGSEVVQGVLLGLVVDD-RLEITNCFPFPQHTE- 71
Query: 114 SDQVALD-IEYHHTMLKSHLKVNPQEVIVGWF-STGLGVTGGSALIH-EF-YCREVPNPV 169
D V D ++Y M++S VN + VGW+ ST G AL+ +F Y + V
Sbjct: 72 -DDVDFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTFYGTFVSRALLDSQFSYQHAIEESV 130
Query: 170 HLTVDTGFRNGEGTV--KAY 187
L D + +G++ KAY
Sbjct: 131 VLIYDP-IKTSQGSLSLKAY 149
Score = 39 (18.8 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 236 EGMEVLMERLLTLINDIYKY 255
+ +++LM+R+ + DI KY
Sbjct: 223 KSLQLLMDRVDEMSQDIVKY 242
>ZFIN|ZDB-GENE-051030-42 [details] [associations]
symbol:eif3hb "eukaryotic translation initiation
factor 3, subunit H, b" species:7955 "Danio rerio" [GO:0006413
"translational initiation" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=IEA;ISS]
[GO:0005852 "eukaryotic translation initiation factor 3 complex"
evidence=ISS] [GO:0006412 "translation" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0007420 "brain development"
evidence=IMP] [GO:0007507 "heart development" evidence=IMP]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
ZFIN:ZDB-GENE-051030-42 GO:GO:0007420 GO:GO:0007507 GO:GO:0006413
GO:GO:0003743 GO:GO:0005852 MEROPS:M67.971 eggNOG:NOG314046
HOVERGEN:HBG000883 KO:K03247 OrthoDB:EOG4SJ5FF HAMAP:MF_03007
EMBL:BC086809 EMBL:BC107824 IPI:IPI00655366 RefSeq:NP_001030341.1
UniGene:Dr.86151 STRING:Q5PR67 PRIDE:Q5PR67 GeneID:567151
KEGG:dre:567151 CTD:567151 NextBio:20888545 Uniprot:Q5PR67
Length = 333
Score = 105 (42.0 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 38/130 (29%), Positives = 61/130 (46%)
Query: 63 KVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIE 122
++ LV+ I Y +E V G LLG V+ D ++I N + P + D +++
Sbjct: 21 QIEGLVVMKIIKHYQEEGQGSEVVQGVLLGLVVED-QLEITNCFPFPQHTEDDADFDEVQ 79
Query: 123 YHHTMLKSHLKVNPQEVIVGWF-STGLGVTGGSALIH-EF-YCREVPNPVHLTVDTGFRN 179
Y M++S VN + VGW+ ST G AL+ +F Y + V L D +
Sbjct: 80 YQMEMMRSLRHVNIDHLHVGWYQSTLYGSFVSRALLDSQFSYQHAIEESVVLIYDP-IKT 138
Query: 180 GEGTV--KAY 187
+G++ KAY
Sbjct: 139 AQGSLCLKAY 148
Score = 47 (21.6 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 203 FQEIPLDLRMIEAERVGFDIL--KSTSVDK-------LPSDLE-GMEVLMERLLTLINDI 252
F+E+P+ ++ V L KST+ DK S LE +++LM+R+ + DI
Sbjct: 179 FEEVPIVIKNSHLINVLLWELEEKSTAADKHELLSLSSSSHLEKSLQMLMDRVDDMSQDI 238
Query: 253 YKY 255
KY
Sbjct: 239 VKY 241
>UNIPROTKB|B4DXI8 [details] [associations]
symbol:PSMD7 "26S proteasome non-ATPase regulatory subunit
7" species:9606 "Homo sapiens" [GO:0000502 "proteasome complex"
evidence=IEA] InterPro:IPR000555 Pfam:PF01398 GO:GO:0000502
InterPro:IPR024969 Pfam:PF13012 HOVERGEN:HBG035951
UniGene:Hs.440604 HGNC:HGNC:9565 ChiTaRS:PSMD7 EMBL:AC009120
EMBL:AK301996 IPI:IPI01009629 SMR:B4DXI8 STRING:B4DXI8
Ensembl:ENST00000540379 Uniprot:B4DXI8
Length = 247
Score = 111 (44.1 bits), Expect = 0.00040, P = 0.00040
Identities = 39/134 (29%), Positives = 66/134 (49%)
Query: 133 KVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNL 192
KVN +E IVGW+ TG + I+E R PN V + +D ++ +AY+SV
Sbjct: 7 KVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEE 66
Query: 193 SLGDRQLAAQ-FQEIPLDLRMIEAERVGFDIL----KSTSV----DKLPSDLEGMEVLME 243
D ++ F+ + ++ EAE VG + L K T+V ++ + + G++ L
Sbjct: 67 VHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQRITNQVHGLKGLNS 126
Query: 244 RLLTLINDIYKYVD 257
+LL DI Y++
Sbjct: 127 KLL----DIRSYLE 136
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.139 0.409 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 277 260 0.00089 114 3 11 22 0.43 33
32 0.49 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 52
No. of states in DFA: 602 (64 KB)
Total size of DFA: 182 KB (2105 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.47u 0.21s 21.68t Elapsed: 00:00:01
Total cpu time: 21.48u 0.21s 21.69t Elapsed: 00:00:01
Start: Fri May 10 22:12:36 2013 End: Fri May 10 22:12:37 2013