Query 023811
Match_columns 277
No_of_seqs 135 out of 720
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 13:11:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023811.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023811hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_U RPN8, 26S proteasome re 100.0 6.4E-53 2.2E-57 394.9 24.0 217 58-275 4-230 (338)
2 2o95_A 26S proteasome non-ATPa 100.0 2.8E-41 9.4E-46 291.4 19.9 174 55-229 3-182 (187)
3 4e0q_A COP9 signalosome comple 100.0 1E-40 3.4E-45 276.4 9.1 134 56-190 2-139 (141)
4 4b4t_V 26S proteasome regulato 100.0 5E-33 1.7E-37 256.9 13.0 211 56-268 21-264 (306)
5 2znr_A AMSH-like protease; met 99.4 1.3E-12 4.3E-17 111.6 11.1 127 58-194 7-138 (178)
6 3rzv_A STAM-binding protein; u 99.3 1.8E-11 6.1E-16 107.0 11.7 125 59-194 41-171 (211)
7 2kks_A Uncharacterized protein 99.0 1.6E-08 5.6E-13 83.1 15.8 133 62-212 2-137 (146)
8 2kcq_A MOV34/MPN/PAD-1 family; 98.8 2.6E-08 8.8E-13 82.5 9.8 134 63-213 2-142 (153)
9 1oi0_A AF2198, hypothetical pr 98.0 3.5E-05 1.2E-09 61.3 9.8 108 61-190 3-112 (124)
10 2p8r_A PRP8, PRE-mRNA-splicing 96.3 0.011 3.9E-07 52.9 8.2 110 71-194 46-172 (273)
11 2og4_A PRE-mRNA-splicing facto 95.8 0.019 6.3E-07 51.1 6.8 112 71-194 45-169 (254)
12 3sbg_A PRE-mRNA-splicing facto 94.4 0.052 1.8E-06 52.6 6.0 103 83-194 368-480 (565)
13 2rh2_A Dihydrofolate reductase 72.4 1.3 4.6E-05 29.5 1.2 13 137-149 23-35 (62)
No 1
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-53 Score=394.94 Aligned_cols=217 Identities=23% Similarity=0.392 Sum_probs=181.7
Q ss_pred CCcEEEEehhhHhHHHHHHhhcC-CCCceEEEEeeeeEecCCeEEEEeeeecccCCCCc---ceeccHHHHHHHHHHhhh
Q 023811 58 SNVTAKVHPLVIFNICDCYVRRP-DQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSD---QVALDIEYHHTMLKSHLK 133 (277)
Q Consensus 58 ~~~~V~vhPlVlL~I~dH~~R~~-~~~~~ViG~LLG~~~~~~~VeVtnsF~vp~~e~~~---~~~iD~~y~~~m~~l~kk 133 (277)
...+|.|||||||+|+|||+|.+ .++.+|+|+|||+ ++|+.|||+|||++|++++++ .+++|.+|+++|+++||+
T Consensus 4 ~~~~V~vhPlVll~I~dH~~R~~~~~~~rViG~LLG~-~~~~~veV~nsF~~p~~e~~~~~~~~~~D~~y~~~m~~~~kk 82 (338)
T 4b4t_U 4 QHEKVTIAPLVLLSALDHYERTQTKENKRCVGVILGD-ANSSTIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMCKK 82 (338)
T ss_dssp CCSEEEECHHHHHHHHHHHHHHTTTCCSCCEEEEEEE-ECSSEEEEEEEEECCEEECSSSTTCEEECHHHHHHHHHHHHH
T ss_pred CCCEEEEecHHHHHHHHHHHHhhcCCCCeEEEEEEeE-EcCCEEEEEEEEEeccccCCCCCccccccHHHHHHHHHHHhh
Confidence 45699999999999999999954 4578999999998 899999999999999987653 368999999999999999
Q ss_pred cCCCCcEEEeeecCCCCCCchhHHHHHHhhcCC-CcEEEEEecCCCCCcceeEEEEeeeeccC-CcccccceEEeceEEE
Q 023811 134 VNPQEVIVGWFSTGLGVTGGSALIHEFYCREVP-NPVHLTVDTGFRNGEGTVKAYVSVNLSLG-DRQLAAQFQEIPLDLR 211 (277)
Q Consensus 134 v~p~e~iVGWY~t~~~~~~~~~~ih~~~~~~~~-~PI~L~vD~~~~~~~l~ikay~~~~~~~~-~~~~~~~F~~ip~~I~ 211 (277)
|||++.+||||+||++++.+|+.||++|+++++ +|++|++|+...++++|++||++.....+ +...+..|.++|++|.
T Consensus 83 V~~~e~iVGWY~tg~~~~~~d~~Ih~~~~~~~~~~pi~l~~d~~~~~~~lpi~aY~s~~~~~~~~~~~~~~F~~lp~~i~ 162 (338)
T 4b4t_U 83 INAKEKLIGWYHSGPKLRASDLKINELFKKYTQNNPLLLIVDVKQQGVGLPTDAYVAIEQVKDDGTSTEKTFLHLPCTIE 162 (338)
T ss_dssp HCCSCEEEEEEECCSSCCSTHHHHHHHHGGGCCSCCCEEEECSCCCSSSCSEEEEEEEEECSSCSTTCEEEEEEECEEEC
T ss_pred cCccCCEEEEEecCCCCCccHHHHHHHHHhccCCCcEEEEecCCCCCCCcceEEEEeehhccCCCcccccEEEEeeeEee
Confidence 999999999999999999999999999999974 89999999999899999999999877654 3455678999999999
Q ss_pred cChhhHHHHHHhhccCCC----CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCceeeeeec
Q 023811 212 MIEAERVGFDILKSTSVD----KLPSDLEGMEVLMERLLTLINDIYKYVDDTVVSMIIFLFLFYSQIV 275 (277)
Q Consensus 212 ~~eaErIav~~l~k~~~~----~l~~~l~~l~~sl~~L~~~l~~i~~Yl~~V~~G~~~~d~~~~~~~~ 275 (277)
++|+||||++|+++...+ .+..++.++.+++++|+.+++.|.+||++|.+|++++|+++||++-
T Consensus 163 ~~eaE~Igv~~l~r~~~~~~~~~l~~~l~~~~~al~~L~~~l~~i~~Yl~~V~~g~~~~n~~ilr~l~ 230 (338)
T 4b4t_U 163 AEEAEEIGVEHLLRDVRDQAAGGLSIRLTNQLKSLKGLQSKLKDVVEYLDKVINKELPINHTILGKLQ 230 (338)
T ss_dssp SCHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred cCcHHHHHHHHHHhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHH
Confidence 999999999999986543 4667899999999999999999999999999999999999999974
No 2
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=100.00 E-value=2.8e-41 Score=291.43 Aligned_cols=174 Identities=30% Similarity=0.455 Sum_probs=154.0
Q ss_pred CCCCCcEEEEehhhHhHHHHHHhhcC--CCCceEEEEeeeeEecCCeEEEEeeeecccCCCCc---ceeccHHHHHHHHH
Q 023811 55 AATSNVTAKVHPLVIFNICDCYVRRP--DQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSD---QVALDIEYHHTMLK 129 (277)
Q Consensus 55 ~~~~~~~V~vhPlVlL~I~dH~~R~~--~~~~~ViG~LLG~~~~~~~VeVtnsF~vp~~e~~~---~~~iD~~y~~~m~~ 129 (277)
|+.+..+|+|||+|+++|+||++|.. .++.+|+|+|||. ..++.++|+|||++|+.++++ .+.+|.+|+++|++
T Consensus 3 ~~~~~~~V~i~plvllkI~~H~~r~~~~~~~~~V~G~LLG~-~~~~~v~V~~~f~lp~~~~~~~~~~~~~d~ey~~~m~~ 81 (187)
T 2o95_A 3 PELAVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGS-WQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYG 81 (187)
T ss_dssp CCCSCSEEEECHHHHHHHHHHHHHHHHTTCCSCCEEEEEEE-ESSSEEEEEEEEEECEEECSSCTTSEEECHHHHHHHHH
T ss_pred CCCCCCEEEEchHHHHHHHHHHhhhcccCCCcEEEEEEEEE-EcCCEEEEEEEEEeCCcccCCCcchhhcCHHHHHHHHH
Confidence 35667899999999999999999974 2578999999998 778899999999999987654 35899999999999
Q ss_pred HhhhcCCCCcEEEeeecCCCCCCchhHHHHHHhhcCCCcEEEEEecCCCCCcceeEEEEeeeeccC-CcccccceEEece
Q 023811 130 SHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLG-DRQLAAQFQEIPL 208 (277)
Q Consensus 130 l~kkv~p~e~iVGWY~t~~~~~~~~~~ih~~~~~~~~~PI~L~vD~~~~~~~l~ikay~~~~~~~~-~~~~~~~F~~ip~ 208 (277)
++++++|++.+||||+++++.+..|..||++|++.+++|++|++||....++++++||++.+...+ +.+....|.++|+
T Consensus 82 ~~~~v~~~~~iVGWY~s~~~~s~~d~~i~~~~~~~~~~~v~Livd~~~~~~~l~i~ay~~~~~~~~~~~~~~~~F~~ip~ 161 (187)
T 2o95_A 82 MFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTS 161 (187)
T ss_dssp HHHTTSSSCEEEEEEECCSSCCTTHHHHHHHHTTTCTTCEEEEECCCTTC-CCSEEEEEEEEECC----CCEEEEEEEEE
T ss_pred HHHHhCCCCCEEEEEcCCCcCCcccHHHHHHHHhcCCCCEEEEECCCCCCCCcCeEEEEEechhcCCCCcccCEEEEeeE
Confidence 999999999999999999999999999999999989999999999988655699999999987764 3345789999999
Q ss_pred EEEcChhhHHHHHHhhccCCC
Q 023811 209 DLRMIEAERVGFDILKSTSVD 229 (277)
Q Consensus 209 ~I~~~eaErIav~~l~k~~~~ 229 (277)
+|.++|+|||||+|+++...+
T Consensus 162 ~I~~~eaE~i~v~~l~~~~~~ 182 (187)
T 2o95_A 162 EIGAEEAEEVGVEHLLRDIKD 182 (187)
T ss_dssp EECCCHHHHHHHHHHHHHCCS
T ss_pred EEecCcHHHHHHHHHHhcCCC
Confidence 999999999999999987654
No 3
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=100.00 E-value=1e-40 Score=276.41 Aligned_cols=134 Identities=23% Similarity=0.389 Sum_probs=114.3
Q ss_pred CCCCcEEEEehhhHhHHHHHHhhcCC---CCceEEEEeeeeEecCCeEEEEeeeecccCCCCcceeccHHHHHHHHHHhh
Q 023811 56 ATSNVTAKVHPLVIFNICDCYVRRPD---QAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHL 132 (277)
Q Consensus 56 ~~~~~~V~vhPlVlL~I~dH~~R~~~---~~~~ViG~LLG~~~~~~~VeVtnsF~vp~~e~~~~~~iD~~y~~~m~~l~k 132 (277)
++++.+|+|||||||+|+|||+|.+. .+.+|+|+|||+ ++|++|||+|||++|++++++++++|.+|+++|++++|
T Consensus 2 ~~~~~~V~ihplvll~I~dH~~R~~~~~g~~~~V~G~LLG~-~~~~~veV~nsF~~p~~~~~~~~~~d~~y~~~m~~~~k 80 (141)
T 4e0q_A 2 SHMSVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGK-QKGRNIEIMNSFELKTDVIGDETVINKDYYNKKEQQYK 80 (141)
T ss_dssp ---CEEEEECHHHHHHHHHHHHCC------CCEEEEEEEEE-EETTEEEEEEEEECCEEEETTEEEECHHHHHHHHHHHH
T ss_pred CCCcEEEEEecHHHHHHHHHHhhhcccCCCCcEEEEEEEEE-EeCCEEEEEEEEEecccCCCCceeecHHHHHHHHHHHH
Confidence 35678999999999999999999642 367999999998 78999999999999999888889999999999999999
Q ss_pred hcCCCCcEEEeeecCCCCCCchhHHHHHHhhcCCCcEEEEEecCCCC-CcceeEEEEee
Q 023811 133 KVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRN-GEGTVKAYVSV 190 (277)
Q Consensus 133 kv~p~e~iVGWY~t~~~~~~~~~~ih~~~~~~~~~PI~L~vD~~~~~-~~l~ikay~~~ 190 (277)
+|||++.+||||+|+++++.+|+.||++|++++++||+|++||.++. |+||++||++.
T Consensus 81 ~v~~~e~iVGWY~s~~~~~~~d~~i~~~~~~~~~~pV~L~~Dp~~~~~g~Lp~~ay~sv 139 (141)
T 4e0q_A 81 QVFSDLDFIGWYTTGDNPTADDIKIQRQIAAINECPIMLQLNPLSRSVDHLPLKLFESL 139 (141)
T ss_dssp HHSTTCEEEEEEEEEC-------CHHHHHHHTTCCCEEEEESCSCCCCTTHHHHHHCC-
T ss_pred HhCCCccEEEEEeCCCCCCcchHHHHHHHHHHCCCCEEEEECCCccCCCeEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999964 67999999874
No 4
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-33 Score=256.92 Aligned_cols=211 Identities=14% Similarity=0.183 Sum_probs=169.5
Q ss_pred CCCCcEEEEehhhHhHHHHHHhhcCCCCceEEEEeeeeEecCCeEEEEeeeecccCCCCcce-eccHHHHHHHHHHhhhc
Q 023811 56 ATSNVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQV-ALDIEYHHTMLKSHLKV 134 (277)
Q Consensus 56 ~~~~~~V~vhPlVlL~I~dH~~R~~~~~~~ViG~LLG~~~~~~~VeVtnsF~vp~~e~~~~~-~iD~~y~~~m~~l~kkv 134 (277)
..+..+|+|+|+|+|+|++|+.+ ..+.+|+|.|||.+.++++++|+|||++|+.++++++ ++|.+|+.+|+++++++
T Consensus 21 ~~~~~~V~is~lallkm~~Ha~~--~~~~eV~GlLlG~~~~~~~v~Vt~~f~~P~~~~~~~v~~~d~~y~~~m~~~~~~v 98 (306)
T 4b4t_V 21 DDTKETVYISSIALLKMLKHGRA--GVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQT 98 (306)
T ss_dssp CSSCCEEEECHHHHHHHHHHTCS--CSSSCCEEEEEEEEETTTEEEEEEEECCCCEESSSCEECCCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeHHHHHHHHHHhcC--CCCceEEEEEeeEEcCCeEEEEEEEEeCCcCCCCCchhcCCHHHHHHHHHHHHHh
Confidence 35678999999999999999944 3578999999998566779999999999999887776 68999999999999999
Q ss_pred CCCCcEEEeeecCCCC----CCchhHHHHHHhhcCCCcEEEEEecCC-CCCcceeEEEEeeeeccC--------------
Q 023811 135 NPQEVIVGWFSTGLGV----TGGSALIHEFYCREVPNPVHLTVDTGF-RNGEGTVKAYVSVNLSLG-------------- 195 (277)
Q Consensus 135 ~p~e~iVGWY~t~~~~----~~~~~~ih~~~~~~~~~PI~L~vD~~~-~~~~l~ikay~~~~~~~~-------------- 195 (277)
++++.+||||||+++. +..|+..|..|+...+++|+|++||.. ..|+++++||++.+.+..
T Consensus 99 ~~~~~vVGWYhShP~~~~~~S~~Di~tq~~yQ~~~~~~V~lV~Dp~~t~~G~~~i~Afr~~~~~~~~~~~~~~~~~s~~~ 178 (306)
T 4b4t_V 99 GRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLIDTGALINNLEPRQTTSNTG 178 (306)
T ss_dssp SCCCCCSEEEEECCSSSCCCCHHHHHHHHHHHHHCSSCEEEEECSSSSSSCSSCEEEEECCHHHHHHCCCCCSCC-----
T ss_pred CCCcceeeEEecCCCCCCcCCHHHHHHHHHHHhcCCCcEEEEECCCcCCCCceeeeEEEecCccccccccCccccccccc
Confidence 9999999999999863 355666666677778899999999987 468999999999865420
Q ss_pred ----------CcccccceEEeceEEEcChhhHHHHHHhhccCCCC---CcccHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 023811 196 ----------DRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDK---LPSDLEGMEVLMERLLTLINDIYKYVDDTVVS 262 (277)
Q Consensus 196 ----------~~~~~~~F~~ip~~I~~~eaErIav~~l~k~~~~~---l~~~l~~l~~sl~~L~~~l~~i~~Yl~~V~~G 262 (277)
+......|+++|+++..++.|+..++.+.+..+.. ..+-.+..+.+.+++.++++.+.+|.+.|.+|
T Consensus 179 ~~~~~~~~~~~~~~~~~yy~l~i~~~ks~le~~~L~~L~~~~w~~~l~~~~~~~~~~~~~~~i~~m~~~~~~y~k~v~~e 258 (306)
T 4b4t_V 179 LLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSGLKMYDYEEKEESNLAATKSMVKIAEQYSKRIEEE 258 (306)
T ss_dssp -----------------CEEECSCCCCCSSCTHHHHHHHHC----------CHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred ccCchhhhhhhccccceEEEeeeEEEeCcHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 00123569999999999999999999998876642 33446678888999999999999999999988
Q ss_pred CcccCc
Q 023811 263 MIIFLF 268 (277)
Q Consensus 263 ~~~~d~ 268 (277)
+...+.
T Consensus 259 ~~~~~~ 264 (306)
T 4b4t_V 259 KELTEE 264 (306)
T ss_dssp HHHHHH
T ss_pred ccCCHH
Confidence 754443
No 5
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=99.40 E-value=1.3e-12 Score=111.65 Aligned_cols=127 Identities=12% Similarity=0.144 Sum_probs=95.8
Q ss_pred CCcEEEEehhhHhHHHHHHhhcCCCCceEEEEeeeeEecCCeEEEEeeeecccCCCCccee-ccHHHHHHHHHHhhhcCC
Q 023811 58 SNVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVA-LDIEYHHTMLKSHLKVNP 136 (277)
Q Consensus 58 ~~~~V~vhPlVlL~I~dH~~R~~~~~~~ViG~LLG~~~~~~~VeVtnsF~vp~~e~~~~~~-iD~~y~~~m~~l~kkv~p 136 (277)
+...|.|...++.+|+.|+.++..++..++|.|+|. ..++..+|+++|++|...+++.+. .+.+- .++. ....
T Consensus 7 ~~~~v~i~~~~l~k~l~hA~~~~~~~~EvcGlL~G~-~~~~~~~V~~v~~~pq~~t~~~~~~~~~~e---~~~~--~~~~ 80 (178)
T 2znr_A 7 GLRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGK-LTHNEFTITHVIVPKQSAGPDYCDMENVEE---LFNV--QDQH 80 (178)
T ss_dssp SCCCEEEETTHHHHHHHHHHHHHTTTCCCEEEEEEE-EETTEEEEEEEEECCEEEETTEEEECCHHH---HHHH--HHHH
T ss_pred CcEEEEECHHHHHHHHHHHHhCCCCCceEEEEEeeE-ecCCCeEEEEEEeCCcCCCCCeeccCCHHH---HHHH--HHhC
Confidence 356899999999999999987644456899999998 667789999999999876655543 33221 1111 2346
Q ss_pred CCcEEEeeecCCC----CCCchhHHHHHHhhcCCCcEEEEEecCCCCCcceeEEEEeeeecc
Q 023811 137 QEVIVGWFSTGLG----VTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSL 194 (277)
Q Consensus 137 ~e~iVGWY~t~~~----~~~~~~~ih~~~~~~~~~PI~L~vD~~~~~~~l~ikay~~~~~~~ 194 (277)
++.+||||+|+++ ++..|+..|..|+...+..++|+++|... .++||+..+.++
T Consensus 81 ~l~~vGwyHSHP~~~~~pS~~Dv~tq~~yq~~~~~~v~iIvsp~~~----~~~afrl~~~g~ 138 (178)
T 2znr_A 81 DLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHK----DTGIFRLTNAGM 138 (178)
T ss_dssp TCEEEEEEEECSSSCSCCCHHHHHHHHHHHHHCTTCEEEEEEGGGT----EEEEEEECHHHH
T ss_pred CCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhcCCEEEEEEcCCCC----cceEEEEECCcE
Confidence 8999999999874 55667777766666677889999999763 389999987654
No 6
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=99.29 E-value=1.8e-11 Score=107.02 Aligned_cols=125 Identities=14% Similarity=0.117 Sum_probs=94.3
Q ss_pred CcEEEEehhhHhHHHHHHhhcCCCCceEEEEeeeeEecCCeEEEEeeeecccCCCCccee-ccH-HHHHHHHHHhhhcCC
Q 023811 59 NVTAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVA-LDI-EYHHTMLKSHLKVNP 136 (277)
Q Consensus 59 ~~~V~vhPlVlL~I~dH~~R~~~~~~~ViG~LLG~~~~~~~VeVtnsF~vp~~e~~~~~~-iD~-~y~~~m~~l~kkv~p 136 (277)
-.+|.|..-++-+|+.|...+..++..++|.|+|. ..++.++|+++|..|...+++.+. .+. +.++-+.+ .
T Consensus 41 lr~v~Ipk~ll~kfL~~A~~~tp~~~EvcGlL~Gk-~~~~~~~I~~v~~ppq~gt~~~v~~~~~~e~~~~~~~------~ 113 (211)
T 3rzv_A 41 LRHVVVPGRLCPQFLQLASANTARGVATCGILCGK-LMRNEFTITHVLIPKQSAGSDYCNTENEEELFLIQDQ------Q 113 (211)
T ss_dssp BCCEEEETTHHHHHHHHHHHHHHTTCCCEEEEEEE-EETTEEEEEEEEECCEEECSSCEEECCHHHHHHHHHH------H
T ss_pred cEEEEECHHHHHHHHHHHHhCCCCCceEEEEEEeE-cCCCCEEEEEEEeCCccCCCCceeccChHHHHHHHhh------C
Confidence 46899999999999999977533356899999998 678889999999988876665442 232 22221111 4
Q ss_pred CCcEEEeeecCCC----CCCchhHHHHHHhhcCCCcEEEEEecCCCCCcceeEEEEeeeecc
Q 023811 137 QEVIVGWFSTGLG----VTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSL 194 (277)
Q Consensus 137 ~e~iVGWY~t~~~----~~~~~~~ih~~~~~~~~~PI~L~vD~~~~~~~l~ikay~~~~~~~ 194 (277)
++.+||||+|++. ++..|+..|..|+...+..|+|++||.. .++.||++.+.++
T Consensus 114 ~l~~vGWyHSHP~~~~~pS~~Dl~tq~~~q~~~~~~I~IVvsP~~----~~lgaFrLtp~G~ 171 (211)
T 3rzv_A 114 GLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKF----QETGFFKLTDHGL 171 (211)
T ss_dssp TCEEEEEEEECTTSCSCCCHHHHHHHHHHHHHCTTCEEEEEETTT----TEEEEEEECHHHH
T ss_pred CCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCC----CeeeEEEeccchh
Confidence 9999999999874 5566777776666667777999999873 2799999998765
No 7
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=99.00 E-value=1.6e-08 Score=83.05 Aligned_cols=133 Identities=13% Similarity=0.068 Sum_probs=93.3
Q ss_pred EEEehhhHhHHHHHHhhcCCCCceEEEEeeeeEecCCeEEEEeeeecccCCCC-cceeccHHHHHHHHHHhhhcCCCCcE
Q 023811 62 AKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFS-DQVALDIEYHHTMLKSHLKVNPQEVI 140 (277)
Q Consensus 62 V~vhPlVlL~I~dH~~R~~~~~~~ViG~LLG~~~~~~~VeVtnsF~vp~~e~~-~~~~iD~~y~~~m~~l~kkv~p~e~i 140 (277)
+.|...++..|+.|..+. .+..++|.|+|. .+++...|+..|++|....+ +...+|.+.+.+..+...+ .++.+
T Consensus 2 l~i~~~~l~~i~~ha~~~--~p~E~cGlL~G~-~~~~~~~v~~~~p~~n~~~~~~~f~~dp~~~~~~~~~~~~--~g~~i 76 (146)
T 2kks_A 2 ITLTKKQMEEMLAHARQA--LPNEACGLLGGR-RDGDDRWVERVYPLNNLDQSPEHFSMDPREQLTAVKDMRK--NGWVM 76 (146)
T ss_dssp EEEEHHHHHHHHHHHHHH--TTSCEEEEEEEE-EETTEEEEEEEECCCCCSCCSSSCCCCHHHHHHHHHHHHH--HTCEE
T ss_pred EEECHHHHHHHHHHHHhc--CCcceEEEEEEE-EcCCCcEEEEEEECCCcCCCCceEEECHHHHHHHHHHHHH--CCCEE
Confidence 568889999999999775 478999999998 66777889999999955433 3456787666555544433 36899
Q ss_pred EEeeecCCCC--CCchhHHHHHHhhcCCCcEEEEEecCCCCCcceeEEEEeeeeccCCcccccceEEeceEEEc
Q 023811 141 VGWFSTGLGV--TGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRM 212 (277)
Q Consensus 141 VGWY~t~~~~--~~~~~~ih~~~~~~~~~PI~L~vD~~~~~~~l~ikay~~~~~~~~~~~~~~~F~~ip~~I~~ 212 (277)
||||+|+++. ..+...++. +. .+..+++++.+.. ++...++||+.. +..|.++|+.+..
T Consensus 77 vG~~HSHP~~~~~PS~~D~~~--~~-~~~~~~lIvs~~~-~~~~~~~af~~~---------~~~~~e~~i~~~~ 137 (146)
T 2kks_A 77 LGNFHSHPATPARPSAEDKRL--AF-DPSLSYLIISLAE-PQKPVCKSFLIK---------KDGVDEEEIILKE 137 (146)
T ss_dssp EEEEEEESSSCSSCCHHHHTT--CC-SSSCEEEEEECSC-SSSCEEEEEEEC---------SSCEEEECEEEES
T ss_pred EEEEeCCCcCCCCCCHHHHHh--hh-cCCCeEEEEEccC-CCceEEEEEEEe---------CCeEEEEEEEEeh
Confidence 9999999853 333333332 11 2344788887643 235679999984 2358999988753
No 8
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=98.79 E-value=2.6e-08 Score=82.49 Aligned_cols=134 Identities=15% Similarity=0.128 Sum_probs=88.0
Q ss_pred EEehhhHhHHHHHHhhcCCCCceEEEEeeeeEec-CCeEEEEeeeecccC--CC-CcceeccHHHHHHHHHHhhhcCCCC
Q 023811 63 KVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLP-DGTVDIRNSYVVPHN--EF-SDQVALDIEYHHTMLKSHLKVNPQE 138 (277)
Q Consensus 63 ~vhPlVlL~I~dH~~R~~~~~~~ViG~LLG~~~~-~~~VeVtnsF~vp~~--e~-~~~~~iD~~y~~~m~~l~kkv~p~e 138 (277)
.|.+.++.+|+.|..+. .+..++|.|+|. .. ++.+.|+..|++|.. ++ .....+|.+.+.++.+..++ .++
T Consensus 2 ~i~~~~l~~i~~ha~~~--~p~E~cGlL~G~-~~~~~~~~v~~~~p~~n~~~~~~~~~f~~dp~~~~~~~~~~~~--~g~ 76 (153)
T 2kcq_A 2 KTTPDILDQIRVHGADA--YPEEGCGFLLGT-VTDDGDNRVAALHRATNRRSEQRTRRYELTADDYRAADAAAQE--QGL 76 (153)
T ss_dssp BCCHHHHHHHHHHHHHH--TTSCCCEEEEEE-ECTTSCEEEEEEEESSCCCCCCCSCCSSCCCCSHHHHHHHHHH--HTC
T ss_pred EeCHHHHHHHHHHHHhc--CCcceEEEEEEe-eccCCCeEEEEEEECCCCCCCCCCcEEEECHHHHHHHHHHHHH--CCC
Confidence 35678899999999875 478999999998 55 677889999999875 32 23345664433334333333 268
Q ss_pred cEEEeeecCCCC--CCchhHHHHHHhhcCCCcEEEEEecCCCCCc-ceeEEEEeeeeccCCcccccceEEeceEEEcC
Q 023811 139 VIVGWFSTGLGV--TGGSALIHEFYCREVPNPVHLTVDTGFRNGE-GTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMI 213 (277)
Q Consensus 139 ~iVGWY~t~~~~--~~~~~~ih~~~~~~~~~PI~L~vD~~~~~~~-l~ikay~~~~~~~~~~~~~~~F~~ip~~I~~~ 213 (277)
.+||||+|+++. ..+...+.. + ..+..+++++.+. .++ ..+++|+... ....|.+.++.|...
T Consensus 77 ~ivG~yHSHP~~~~~PS~~D~~~--~-~~~~~~~lIvs~~--~~~~~~~~af~~~~-------~~g~~~e~~i~v~~~ 142 (153)
T 2kcq_A 77 DVVGVYHSHPDHPARPSATDLEE--A-TFPGFTYVIVSVR--DGAPEALTAWALAP-------DRSEFHREDIVRPDP 142 (153)
T ss_dssp EEEEEEEECSSSSSSCCHHHHHT--C-CCTTSEEEEEEEE--TTEEEEEEEEEECT-------TCSCEEEECCBCCCS
T ss_pred eEEEEEeCCCCCCCCCCHHHHHh--h-hcCCCeEEEEECC--CCCccEEEEEEEeC-------CCCcEEEEEEEEecC
Confidence 999999999863 233333322 1 1244578888643 233 4689999841 124688888877543
No 9
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=98.01 E-value=3.5e-05 Score=61.25 Aligned_cols=108 Identities=16% Similarity=0.128 Sum_probs=67.0
Q ss_pred EEEEehhhHhHHHHHHhhcCCCCceEEEEeeeeEecCCeEEEEeeeecccCCCCcceeccHHHHHHHHHHhhhcCCCCcE
Q 023811 61 TAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVI 140 (277)
Q Consensus 61 ~V~vhPlVlL~I~dH~~R~~~~~~~ViG~LLG~~~~~~~VeVtnsF~vp~~e~~~~~~iD~~y~~~m~~l~kkv~p~e~i 140 (277)
.+.|...++..|++|..+. .+..++|.|+|. . + .|++.|++| ...+. .+..|...|.. .++.+
T Consensus 3 ~v~i~~~~l~~i~~ha~~~--~P~E~cGlL~g~-~-~---~v~~~~~~p-~~~~~---~~~~f~~~~~~------~~~~i 65 (124)
T 1oi0_A 3 SMKISRGLLKTILEAAKSA--HPDEFIALLSGS-K-D---VMDELIFLP-FVSGS---VSAVIHLDMLP------IGMKV 65 (124)
T ss_dssp SCEECHHHHHHHHHHHHHH--TTSCCEEEEEES-T-T---EECEEEECC-CCC----------------------CCCEE
T ss_pred EEEEcHHHHHHHHHHHHhc--CCCeeEEEEecc-c-C---EEEEEEECC-CCCCC---cCceeeeeecc------CCCEE
Confidence 3678888999999999875 478999999997 4 2 689999999 54322 11123222222 57999
Q ss_pred EEeeecCCCC--CCchhHHHHHHhhcCCCcEEEEEecCCCCCcceeEEEEee
Q 023811 141 VGWFSTGLGV--TGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSV 190 (277)
Q Consensus 141 VGWY~t~~~~--~~~~~~ih~~~~~~~~~PI~L~vD~~~~~~~l~ikay~~~ 190 (277)
||||||+++- ..+...+.. +.. +..+++++.+.. +...+++|...
T Consensus 66 vG~~HSHP~~~~~PS~~D~~~--~~~-~~~~~lIvs~~~--~~~~~~~f~~~ 112 (124)
T 1oi0_A 66 FGTVHSHPSPSCRPSEEDLSL--FTR-FGKYHIIVCYPY--DENSWKCYNRK 112 (124)
T ss_dssp EEEEEEESSSCCSCCHHHHHH--HHH-SCSEEEEEETTC--CTTCEEEEETT
T ss_pred EEEEEECcCCCCccCHHHHHh--hhc-CCCEEEEEEccC--CCceEEEEecC
Confidence 9999999852 233333332 222 345788877533 23567888763
No 10
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A
Probab=96.32 E-value=0.011 Score=52.91 Aligned_cols=110 Identities=22% Similarity=0.289 Sum_probs=74.6
Q ss_pred HHHHHHhhcCCCCceEEEEeeeeEec---CCeEEEEeeeecccCCCCcceec-----cHHHHHHHHHHhhhcCCCCcEEE
Q 023811 71 NICDCYVRRPDQAERVIGTLLGSVLP---DGTVDIRNSYVVPHNEFSDQVAL-----DIEYHHTMLKSHLKVNPQEVIVG 142 (277)
Q Consensus 71 ~I~dH~~R~~~~~~~ViG~LLG~~~~---~~~VeVtnsF~vp~~e~~~~~~i-----D~~y~~~m~~l~kkv~p~e~iVG 142 (277)
||++.+.....-...+.|.|.|. .. .+.-||+.---+|+..+.+.+.. ..+|+ -++..+|
T Consensus 46 nllkkFi~IADlrTq~~G~LyG~-s~~d~~~vkeI~~ivipPQ~gt~~sv~~~~~~p~~~~l-----------~dLe~LG 113 (273)
T 2p8r_A 46 NILKKFITISDLRTQIAGFMYGV-SPPDNPQVKEIRCIVLVPQTGSHQQVNLPTQLPDHELL-----------RDFEPLG 113 (273)
T ss_dssp HHHHHHHHTSCSSSCCEEEEEEE-CCTTCTTEEEEEEEECCSBEECSSCEECCSSCCCCTTT-----------TTSEEEE
T ss_pred HHHHHHHHHhhccceEEEEEecc-CCCCCCCeEEEEEEEECCccCCCceEECCCcCcchhhh-----------ccccccc
Confidence 55556666544456899999998 53 24677877666676655443321 11232 7999999
Q ss_pred eeecCCC----CCCchhHHHHHHhhc---C--CCcEEEEEecCCCCCcceeEEEEeeeecc
Q 023811 143 WFSTGLG----VTGGSALIHEFYCRE---V--PNPVHLTVDTGFRNGEGTVKAYVSVNLSL 194 (277)
Q Consensus 143 WY~t~~~----~~~~~~~ih~~~~~~---~--~~PI~L~vD~~~~~~~l~ikay~~~~~~~ 194 (277)
|=+|.+. ++..|+..|..+... . ++.|++++-+ ..|..++.||++.+.++
T Consensus 114 WIHTqp~e~~~LSs~Dl~tH~~~~~~~~~~~~~e~I~Ivcsf--tpgs~sl~af~LT~~G~ 172 (273)
T 2p8r_A 114 WMHTQPNELPQLSPQDVTTHAKLLTDNISWDGEKTVMITCSF--TPGSVSLTAYKLTPSGY 172 (273)
T ss_dssp EEEEESSCCSSCCHHHHHHHHHHHHHCTTCCTTTCEEEEEEE--ETTEEEEEEEEECHHHH
T ss_pred eEeeCCCCCCCcCHHHHHHHHHHHhcccccCCCceEEEEEec--CCCCceeEEEEcChHHh
Confidence 9999763 567888888777654 2 3678887743 45667899999987664
No 11
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}
Probab=95.77 E-value=0.019 Score=51.05 Aligned_cols=112 Identities=13% Similarity=0.232 Sum_probs=74.0
Q ss_pred HHHHHHhhcCCCCceEEEEeeeeEec---CCeEEEEeeeecccCCCCcceecc-----HHHHHHHHHHhhhcCCCCcEEE
Q 023811 71 NICDCYVRRPDQAERVIGTLLGSVLP---DGTVDIRNSYVVPHNEFSDQVALD-----IEYHHTMLKSHLKVNPQEVIVG 142 (277)
Q Consensus 71 ~I~dH~~R~~~~~~~ViG~LLG~~~~---~~~VeVtnsF~vp~~e~~~~~~iD-----~~y~~~m~~l~kkv~p~e~iVG 142 (277)
+|++-+.....-...+.|.|.|. .. .+.-||+.---+|+..+.+.+... .+|++ .-++..+|
T Consensus 45 nLlkkFi~IAD~~Tq~cG~LyG~-~~~d~~~v~eI~~ivippQ~gt~~s~~~~~~~p~~~~~~---------l~dLe~LG 114 (254)
T 2og4_A 45 NLLKKFIEISDVKIQVAAFIYGM-SAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIGDLPD---------TEGLELLG 114 (254)
T ss_dssp HHHHHHHHTSCSSSCCEEEEEEE-ECSSCTTEEEEEEEECCCEEEETTEEEECCCCCCTTSTT---------CTTCEEEE
T ss_pred HHHHHHHHHhhccceEEEEEEcc-CCCCCCCeEEEEEEEECCccCCCceEECCCcCccccchh---------hcCCEecc
Confidence 45555655543456799999998 52 245678766666665554433110 12211 26899999
Q ss_pred eeecCCC----CCCchhHHHHHHhhc-CCCcEEEEEecCCCCCcceeEEEEeeeecc
Q 023811 143 WFSTGLG----VTGGSALIHEFYCRE-VPNPVHLTVDTGFRNGEGTVKAYVSVNLSL 194 (277)
Q Consensus 143 WY~t~~~----~~~~~~~ih~~~~~~-~~~PI~L~vD~~~~~~~l~ikay~~~~~~~ 194 (277)
|=+|.+. ++..|+..|..+... .++.|++++-+ ..|..++.||++.+.++
T Consensus 115 WIHTqptq~~fLSs~Dl~tH~~~~~~~~~eaIaIvcsf--tpgs~sl~af~LT~~G~ 169 (254)
T 2og4_A 115 WIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFS--TPGSVSLSAYNLTDEGY 169 (254)
T ss_dssp EEEEESSCCSSCCHHHHHHHHHHHTTTCTTCEEEEEEE--ETTEEEEEEEEECHHHH
T ss_pred eEeeCCCCCcccCHHHHHHHHHHHHhcCCCeEEEEEec--CCCCceeEEEEcChhhh
Confidence 9999763 567788888777663 47889988754 34567899999988764
No 12
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=94.44 E-value=0.052 Score=52.55 Aligned_cols=103 Identities=14% Similarity=0.207 Sum_probs=68.9
Q ss_pred CceEEEEeeeeEec-C--CeEEEEeeeecccCCCCcceeccHHHHHHHHHHhhh--cCCCCcEEEeeecCCC----CCCc
Q 023811 83 AERVIGTLLGSVLP-D--GTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLK--VNPQEVIVGWFSTGLG----VTGG 153 (277)
Q Consensus 83 ~~~ViG~LLG~~~~-~--~~VeVtnsF~vp~~e~~~~~~iD~~y~~~m~~l~kk--v~p~e~iVGWY~t~~~----~~~~ 153 (277)
..++.|.|.|. .. + +..||+.---+|+..+.+.+.+. + +..+.. .-.+...+||=||.+. ++..
T Consensus 368 rTQicGyLyG~-sp~dn~nVkEI~cIVipPQ~Gt~~sv~lp-~-----lp~he~~~~l~dLe~LGWIHTqp~et~fLSs~ 440 (565)
T 3sbg_A 368 KIQVAAFIYGM-SAKDHPKVKEIKTVVLVPQLGHVGSVQIS-N-----IPDIGDLPDTEGLELLGWIHTQTEELKFMAAS 440 (565)
T ss_dssp SSCCEEEEEEE-EETTEEEEEEEEEEECCCEEECSSCEEEC-C-----CCCCTTSTTCTTCEEEEEEEEESSCCSSCCHH
T ss_pred cceeEEEEecC-CCCCCCCeEEEEEEEECCccCCCceEECC-C-----CCccccccccccCEecceeeecCCcccccCHH
Confidence 45799999998 54 3 35677766666766665544322 0 000000 1268999999998763 6788
Q ss_pred hhHHHHHHhhcCC-CcEEEEEecCCCCCcceeEEEEeeeecc
Q 023811 154 SALIHEFYCREVP-NPVHLTVDTGFRNGEGTVKAYVSVNLSL 194 (277)
Q Consensus 154 ~~~ih~~~~~~~~-~PI~L~vD~~~~~~~l~ikay~~~~~~~ 194 (277)
|+..|..+...++ +.|.+++- ...|..++.||.+.+++.
T Consensus 441 Dl~THakl~~~n~~~~I~itvs--ftPGS~SLsAy~LT~eGy 480 (565)
T 3sbg_A 441 EVATHSKLFADKKRDCIDISIF--STPGSVSLSAYNLTDEGY 480 (565)
T ss_dssp HHHHHHHHHSSSCTTCEEEEEE--EETTEEEEEEEEECHHHH
T ss_pred HHHHHHHHHHhCCCCeEEEEEE--ecCCceEEEEEecCHhHH
Confidence 8889988776653 44655543 556889999999998874
No 13
>2rh2_A Dihydrofolate reductase type 2; folate metabolism, plasmid-encoded R67 DHFR, TMP-resistant DHFR, antibiotic resistance, methotrexate resistance; 0.96A {Escherichia coli} SCOP: b.34.4.1 PDB: 1vif_A* 1vie_A 2gqv_A 2rk1_A* 2rk2_A* 3sfm_A 2p4t_A*
Probab=72.38 E-value=1.3 Score=29.46 Aligned_cols=13 Identities=54% Similarity=1.015 Sum_probs=10.0
Q ss_pred CCcEEEeeecCCC
Q 023811 137 QEVIVGWFSTGLG 149 (277)
Q Consensus 137 ~e~iVGWY~t~~~ 149 (277)
+-+|||||.|.-.
T Consensus 23 qg~ivgwyct~lt 35 (62)
T 2rh2_A 23 QGQIVGWYCTNLT 35 (62)
T ss_dssp EEEEEEEECCSSC
T ss_pred cceEeEEEEcccc
Confidence 4579999998643
Done!